BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (954 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] gi|254040179|gb|ACT56975.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 954 Score = 2001 bits (5185), Expect = 0.0, Method: Compositional matrix adjust. Identities = 954/954 (100%), Positives = 954/954 (100%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK Sbjct: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL Sbjct: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI Sbjct: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP Sbjct: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI Sbjct: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN Sbjct: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK Sbjct: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN Sbjct: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI Sbjct: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC Sbjct: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL Sbjct: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV Sbjct: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ Sbjct: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD Sbjct: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT Sbjct: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ Sbjct: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 >gi|315122311|ref|YP_004062800.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495713|gb|ADR52312.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 934 Score = 1511 bits (3912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 712/937 (75%), Positives = 812/937 (86%), Gaps = 3/937 (0%) Query: 18 LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77 + YPFPEK+KG++VI+RNG T FDPSKIS AIMKAF+AVEGK AS S RV++I+ LTE Sbjct: 1 MTYPFPEKVKGIKVIRRNGKTTPFDPSKISWAIMKAFIAVEGKSASSSSRVRNIVNVLTE 60 Query: 78 QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137 +TV +LL S LI+HIE IQDQVE SLM++ HHK+ REYVLYREERS +R A++HSKS Sbjct: 61 ETVLKLLHEYSSNLIIHIEAIQDQVEASLMRNDHHKVAREYVLYREERSGIRTAKAHSKS 120 Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197 D P LKI MDD T + +SKRL+MI+EE+C+GLQDVS +++LSET KNMYDG+SE + Sbjct: 121 DTP---HLKIRMDDDTFVPLDSKRLKMIIEESCAGLQDVSLELILSETIKNMYDGMSEVE 177 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 LE AL+F+SR LIE+EPNYAKVT R LL+KLRREVLT +YK P+KATH EM LY YF Sbjct: 178 LELALVFASRALIEREPNYAKVTTRLLLDKLRREVLTAIYKTPKKATHQEMSNLYKNYFL 237 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 +YIEEG+KA LL ESM +FDL YLAN LK +RD FEYLGLQ LYDRYFLH++GSR EMP Sbjct: 238 QYIEEGIKAHLLAESMKEFDLSYLANALKPDRDLMFEYLGLQTLYDRYFLHVDGSRFEMP 297 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 QAFFMRVAMG+ALKE EKEKRAVEFYNL+SSFHFMCSTPTLFN+GTRHPQLSSCFLTTVP Sbjct: 298 QAFFMRVAMGIALKEPEKEKRAVEFYNLISSFHFMCSTPTLFNAGTRHPQLSSCFLTTVP 357 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DDL IF A+++NA+LAKYSGGLGNDWT VRGLG+HI GTNGKSQGVIPFLKVANDTAVA Sbjct: 358 DDLGDIFEAIKDNALLAKYSGGLGNDWTSVRGLGSHIQGTNGKSQGVIPFLKVANDTAVA 417 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +N Sbjct: 418 VNQGGKRKGAVCAYLETWHIDIEEFLNLRKNTGDDRRRTHDMNTANWVPDLFMKRVEKNE 477 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTLFSPDEV DLH LYG +FE AY NYE++A+RGEIK+FRKI+AV+LWRKMLTM+FETG Sbjct: 478 QWTLFSPDEVGDLHHLYGHDFEKAYSNYEKKAERGEIKLFRKIAAVSLWRKMLTMVFETG 537 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 HPWITFKDPCNIRSPQQHVG V SNLCTEITLN S +E AVCNLGSINL AH N D Sbjct: 538 HPWITFKDPCNIRSPQQHVGNVLCSNLCTEITLNISKDEVAVCNLGSINLAAHLTENGLD 597 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 YDKLA+TI TAVR+LDNVID+N + I+KA+ SN HR IGLGLMGFQSALH L IPY S Sbjct: 598 YDKLANTIHTAVRMLDNVIDVNRYAIKKAENSNRKHRPIGLGLMGFQSALHALRIPYESV 657 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EAV+ AD+SMEFISFHAISAS LA+ERG YS+FKGSLW +G+ PIDS+ LL EVRD+ Sbjct: 658 EAVDFADQSMEFISFHAISASTNLAEERGPYSTFKGSLWSKGILPIDSLQLLEEVRDKCE 717 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++++SRL WD L++RVK++GMRNSNCMAIAPTATI+NICGVSQSI+PSYQNL+VKSNMSG Sbjct: 718 IDKSSRLGWDVLRERVKSVGMRNSNCMAIAPTATISNICGVSQSIEPSYQNLFVKSNMSG 777 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 DFT+VNS LVN+LK R LWDE MISDLK++DGSIGNIERIP+DLKK+HATAFEIDP+WLI Sbjct: 778 DFTIVNSCLVNDLKARGLWDEVMISDLKHYDGSIGNIERIPEDLKKLHATAFEIDPIWLI 837 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 ++ASRRQKWIDQAQSLNLYL +PSGKKLDFIYRQ+WLMGLKTTYYLRSRSAT VEKSTLK Sbjct: 838 KAASRRQKWIDQAQSLNLYLSDPSGKKLDFIYRQSWLMGLKTTYYLRSRSATHVEKSTLK 897 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 VDGKLN+VP+ D NSS SSC S ECEVCQ Sbjct: 898 EVDGKLNSVPIMDHNSSELLSTPQSSCDSGVECEVCQ 934 >gi|110635037|ref|YP_675245.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium sp. BNC1] gi|110286021|gb|ABG64080.1| ribonucleoside-diphosphate reductase, alpha subunit [Chelativorans sp. BNC1] Length = 954 Score = 1277 bits (3305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 606/925 (65%), Positives = 737/925 (79%), Gaps = 2/925 (0%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG VT FDPSKI+ A+ KAF+AVEG A+ S RV +++++LTEQ V L + N++ Sbjct: 32 RVIRRNGSVTPFDPSKIAIALTKAFLAVEGSVAAGSRRVHEVVEDLTEQVVGALTRRNEA 91 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIE+IQDQVE +LM+ GHHK+ R YVLYREER+ RAA +++ A P L++M+ Sbjct: 92 GRTFHIEEIQDQVELALMRDGHHKVARAYVLYREERARERAATKTAENAA--QPILQVML 149 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 +DG+ + RL +VEEAC GL+ VS++ +LSE +N+YDG++ +L A I ++RTL Sbjct: 150 EDGSKTPLDIARLTAVVEEACQGLEAVSAEAILSEAQRNLYDGITLDELSLAPILAARTL 209 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +E EPNY++V+AR LL+KLRRE LT V +P +AT EM YP YF +I G++A ++ Sbjct: 210 VETEPNYSQVSARLLLDKLRREALTFVEGRPTQATQAEMVERYPAYFEGFIAAGIQAEMI 269 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + FDL L LK ERD F+YLG Q LYDRYFLH +G R E+PQAFFMRVAMGLA Sbjct: 270 DPELGRFDLKRLGAALKPERDLRFQYLGFQTLYDRYFLHEDGVRYELPQAFFMRVAMGLA 329 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L+E ++E RA+EFY+L+S+F FMCSTPTLFN+GT PQLSSCFLTTV DDL GIF A+++ Sbjct: 330 LREIDREARAIEFYDLISTFDFMCSTPTLFNAGTLRPQLSSCFLTTVSDDLDGIFKAVKD 389 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+LAKYSGGLGNDWTPVRGLGA I GTNGKSQG++PFLKVANDTA+AVNQGGKRKGAVC Sbjct: 390 NALLAKYSGGLGNDWTPVRGLGARIKGTNGKSQGIVPFLKVANDTAIAVNQGGKRKGAVC 449 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV + WTLFSPDE D Sbjct: 450 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMERVEADGEWTLFSPDETPD 509 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHDLYG F+ AYE YE +A RGEI+VFR++ AV LWR+MLTMLFETGHPWITFKDPCN+ Sbjct: 510 LHDLYGPAFKAAYEEYEARAARGEIRVFRQVRAVDLWRRMLTMLFETGHPWITFKDPCNL 569 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 RSPQ+H GVVHSSNLCTEITLN+S +E AVCNLGSINL AH + D +KLA T+ TA+ Sbjct: 570 RSPQRHAGVVHSSNLCTEITLNTSKDEVAVCNLGSINLAAHVSEKGLDMEKLARTVATAM 629 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVIDIN +TI +A++SN HR +GLGLMGFQ AL L +PYAS AVE AD SME Sbjct: 630 RMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFQDALQTLRLPYASEGAVEFADRSMEA 689 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I++HAISASVELA+ERGAY+SF+GSLW +GV PIDS+ +AE R M+R + L W+ L Sbjct: 690 IAYHAISASVELAKERGAYASFEGSLWSKGVLPIDSLSFVAESRGVDGMDRGTTLDWESL 749 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + RV GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKSNMSGDFTVVN+ LV++ Sbjct: 750 RARVVEHGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLFVKSNMSGDFTVVNAALVHD 809 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 LK R LWDE M+SDLKY+DG +G I+R+PDDLK ++ATAFEIDP WLIE+ASRRQKWIDQ Sbjct: 810 LKARGLWDEVMVSDLKYYDGLLGQIDRVPDDLKALYATAFEIDPAWLIEAASRRQKWIDQ 869 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 AQSLNLY+ PSGKKLD +YR AW GLKTTYYLRSRSAT VEKSTLK DGKLNAV V Sbjct: 870 AQSLNLYIANPSGKKLDELYRLAWRKGLKTTYYLRSRSATHVEKSTLKRADGKLNAVAVM 929 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 ++ G+ + D +CE CQ Sbjct: 930 PQPAAFELEGVKACAIDDPDCEACQ 954 >gi|209885873|ref|YP_002289729.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha carboxidovorans OM5] gi|209874069|gb|ACI93865.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha carboxidovorans OM5] Length = 969 Score = 1269 bits (3283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 612/951 (64%), Positives = 738/951 (77%), Gaps = 13/951 (1%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 P P P + +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG A+ S RV +I++ L Sbjct: 20 PESLAPSPRE-PAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEIVEGL 78 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 T++ VT L + HIED+QDQVE +LM+S HHK+ R YVLYREER+ RAA + Sbjct: 79 TQEVVTNLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAAGKSA 138 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 ++ P L++ + +GT + KRLE+I+ EA GL V VL+E +N+YDG+S+ Sbjct: 139 EAAVSNEPALQMTLANGTRAPLDIKRLELIIREAGEGLDGVDPAPVLAEARRNLYDGISQ 198 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +L A I ++RTL+E EPNYA V+AR LL+KLR EVLT +YK P A+ +M Y EY Sbjct: 199 DELALAPIMAARTLVEHEPNYAYVSARLLLDKLRSEVLTYLYKTPTSASQADMATRYAEY 258 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F Y++ G++A LL + FDL LA+ LK ERD F++LGLQ LYDRYFLH+ GSR+E Sbjct: 259 FPVYVKAGIEAELLDPELGRFDLDRLASALKPERDLQFQFLGLQTLYDRYFLHVGGSRLE 318 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT PQLSSCFLTT Sbjct: 319 LPQAFFMRVAMGLAVREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTT 378 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V DDL GIF A+++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDTA Sbjct: 379 VADDLDGIFKAVKDNALLAKYSGGLGNDWTNVRGLGAHIKGTNGESQGVVPFLKVANDTA 438 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV + Sbjct: 439 IAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEE 498 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + WTLFSPDE DLHDLYG F+ AYE YE +A RGEI VF+++ A LWR+MLTMLFE Sbjct: 499 DGTWTLFSPDETPDLHDLYGPAFKAAYEGYEAKAARGEIHVFKEMRATDLWRRMLTMLFE 558 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINLL H Sbjct: 559 TGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREG 618 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 ++DKL TI TAVR+LDNVIDIN +TI +A++SN HR +GLGLMGFQ ALH+ IP Sbjct: 619 LNHDKLKRTIATAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHIQRIPIT 678 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S AV ADESME IS+HAISASV+LA ERG Y SF+GSLW QG+ PIDS+ +LA+ R+ Sbjct: 679 SDAAVAFADESMEIISYHAISASVDLAGERGRYPSFEGSLWSQGMLPIDSVSILAKARNG 738 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 ++ ++ L W L++RVKT GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSNM Sbjct: 739 APLDTSATLDWSGLRERVKTDGMRNSNVMAIAPTATISNICGVTQSIEPAYQNLYVKSNM 798 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SGDFTVVN FLV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++AT FEID W Sbjct: 799 SGDFTVVNEFLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATVFEIDTSW 858 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LI++A+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW +GLKTTYYLRSRSAT VEKST Sbjct: 859 LIQAAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKST 918 Query: 916 LKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 LKG DGKLNAV P+ PN + L +C+ D +CE CQ Sbjct: 919 LKGTDGKLNAVSASIPSAQQHAPIVVPNDTAPDLTGVKACSIDNPDCEACQ 969 >gi|90425008|ref|YP_533378.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodopseudomonas palustris BisB18] gi|90107022|gb|ABD89059.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris BisB18] Length = 960 Score = 1260 bits (3260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/956 (62%), Positives = 736/956 (76%), Gaps = 21/956 (2%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D PS+ G ++I+RNG VT FDP+KI+ A+ KAF+AVEG A+ S R+ D++ Sbjct: 12 DRPPSVVEHVTAANPGYRLIRRNGTVTRFDPTKITLALTKAFLAVEGSSAASSRRIHDVV 71 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LT+Q V+ L + IED+QDQVE +LM+ +HK+ R YVLYRE+R+ R Sbjct: 72 GGLTQQIVSSLTRRADLGHTFLIEDVQDQVELALMRGEYHKVARAYVLYREDRAKQRIES 131 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + + P +P L++ DG ++ ++ RL +VEEAC+GL DV + VLSET +N+YDG Sbjct: 132 AQNAQLEPASP-LRVTATDGIVVPLDAVRLAAVVEEACAGLDDVRASQVLSETRRNLYDG 190 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +S +L A I ++RTLIE EPNYAKV+AR LL+KLRRE L+ V +P++ATH EM Y Sbjct: 191 ISLDELALAPILAARTLIETEPNYAKVSARLLLDKLRREALSFVAGRPEQATHAEMAGRY 250 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 +YF YI G+ + LL + FDLV L+ LK ERD F+YLGLQ LYDRYFLH++G+ Sbjct: 251 GDYFKAYIATGIASELLDRELGRFDLVRLSAALKPERDLQFDYLGLQTLYDRYFLHVDGT 310 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQAFFMRVA GLAL+E ++E +A+EFY LLSSF FM STPTLFN+GT PQLSSCF Sbjct: 311 RFELPQAFFMRVACGLALREIDREDKAIEFYELLSSFDFMASTPTLFNAGTLRPQLSSCF 370 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAN Sbjct: 371 LTTVPDDLDGIFKSIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVAN 430 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTA+AVNQGGKRKGAVCAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFM R Sbjct: 431 DTAIAVNQGGKRKGAVCAYLETWHIDIEQFLDLRKNTGDDRRRTHDMNTANWVPDLFMTR 490 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V Q+ GWTLFSPDE DLHDL G+ F YE YE +A+RGE++VF+++ A LWRKMLTM Sbjct: 491 VEQDGGWTLFSPDETPDLHDLTGQAFVERYEQYEAKAERGEMRVFKRLRAADLWRKMLTM 550 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S+ E AVCNLGSINL+ H Sbjct: 551 LFETGHPWITFKDPCNLRSPQSHAGVVHSSNLCTEITLNTSTTEVAVCNLGSINLVNHLV 610 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 N D+ +LA ++ T +R+LDNV+D+N +TI +A+ SN HR +GLG+MGFQ AL++L + Sbjct: 611 NGAIDHARLARSVGTGMRMLDNVLDVNFYTIPEARSSNLKHRPVGLGIMGFQDALNILRL 670 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS +AV ADESME +S+ AISASV+LA ERG Y SF+GSLW +GV P+DSI + Sbjct: 671 PYASEQAVAFADESMESVSYWAISASVDLAAERGRYPSFEGSLWSKGVLPLDSIARVDAA 730 Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R + ++R+ RL WD L+ RVK +GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYV Sbjct: 731 RALPVEVDRSFRLDWDGLRARVKAVGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLYV 790 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSNMSGDFTVVN++LVN+LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI Sbjct: 791 KSNMSGDFTVVNTYLVNDLKARGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEI 850 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 D WLIE+A+RRQKWIDQ+QSLNLYL P+GKKLD +YR AW GLKTTYYLRSRSAT V Sbjct: 851 DSAWLIEAAARRQKWIDQSQSLNLYLANPNGKKLDALYRLAWRRGLKTTYYLRSRSATHV 910 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIP------------SSCT-SDTECEVCQ 954 EKSTLKG DGKLNAV S+ ++ P +C D CEVCQ Sbjct: 911 EKSTLKGTDGKLNAV------SAGLAMDTPRAVAVACGAVAGQACAIDDPTCEVCQ 960 >gi|75677069|ref|YP_319490.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter winogradskyi Nb-255] gi|74421939|gb|ABA06138.1| ribonucleotide reductase large subunit [Nitrobacter winogradskyi Nb-255] Length = 969 Score = 1258 bits (3256), Expect = 0.0, Method: Compositional matrix adjust. Identities = 604/954 (63%), Positives = 738/954 (77%), Gaps = 15/954 (1%) Query: 16 PSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 PSL A P QVI+RNG V+ FD +KI+ A+ KAF+AVEG A+ S RV DI+ Sbjct: 16 PSLSAAATAPSSEPACQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVT 75 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT+Q V L + + + HIEDIQDQVE +LM+S HHK+ R YVLYREER+ RA Sbjct: 76 GLTDQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKAQ 135 Query: 134 HSKSDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189 SKS A L++ DG+LI+ ++ RL +VEEAC+GL DVS+ +L+ET++N+ Sbjct: 136 ESKSKKGGAAAAKAALRMKSADGSLIALDTPRLTAVVEEACAGLGDVSASAILTETHRNL 195 Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 YDG+S +L A I ++RTL+E +P+YAKV+AR LL+K+RRE L+ V + ++AT EM Sbjct: 196 YDGISVDELAQAPILAARTLVETDPDYAKVSARLLLDKMRREALSFVAGRLEQATQAEMA 255 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y +YF Y+ G+ LL + FDL LA LK ERD F+YLGLQ LYDRYFLH+ Sbjct: 256 ERYADYFLSYVRAGIDHELLDPEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHV 315 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT PQLS Sbjct: 316 RSVRFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLS 375 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLK Sbjct: 376 SCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLK 435 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 VANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLF Sbjct: 436 VANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLF 495 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+RV ++ WTLFSPDE DLHDL GK F Y YE +A RGE++V +++ AV LWR+M Sbjct: 496 MQRVEEDGMWTLFSPDETPDLHDLTGKAFAGRYAYYEEKAARGELRVTKQVRAVDLWRRM 555 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 LTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL+ Sbjct: 556 LTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVN 615 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 H + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN HR +GLG+MGFQ AL++ Sbjct: 616 HIKDGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGIMGFQDALNI 675 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +PYAS EAV ADESME I++HAIS SVELA ERG Y S++GSLW +GV P+DS+ L+ Sbjct: 676 LRLPYASDEAVSFADESMEAIAYHAISGSVELAAERGRYPSYQGSLWSKGVLPLDSLELV 735 Query: 730 AEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 E R E+ ++R+SRL WD L++RV TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQN Sbjct: 736 DEARGAEVDIDRSSRLDWDSLRQRVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQN 795 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATA Sbjct: 796 LYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGEIDRVPDDLKALYATA 855 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FEID WLI++A+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW GLKTTYYLRSRSA Sbjct: 856 FEIDSAWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSA 915 Query: 909 TSVEKSTLKGVDGKLNAVPVT--------DPNSSTHSLGIPSSCTSDTECEVCQ 954 T VEKSTLKG DGKLNAV + ++ S G S D CE CQ Sbjct: 916 THVEKSTLKGTDGKLNAVAASVSVAPLNGHAAVASASEGWKSCRVDDPTCEACQ 969 >gi|299134881|ref|ZP_07028073.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp. 1NLS2] gi|298590691|gb|EFI50894.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp. 1NLS2] Length = 967 Score = 1253 bits (3241), Expect = 0.0, Method: Compositional matrix adjust. Identities = 612/948 (64%), Positives = 739/948 (77%), Gaps = 12/948 (1%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 SLA P P + +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG A+ S RV + ++ LT Sbjct: 22 SLA-PSPSE-PAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEAVEQLT 79 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 ++ V L + HIED+QDQVE +LM+S HHK+ R YVLYREER+ RAA S Sbjct: 80 QEVVGTLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAADRAST 139 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 + + P L++ + +G + + KR E+I+ EAC GL V VL+E +N+YDG+S+ Sbjct: 140 TVSSNEPTLQMTLANGARVPLDLKRFELIIREACEGLDAVDPAPVLAEARRNLYDGISQD 199 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L A I ++RTL+E+EPNYA V+AR LL+KLR EVL+ V+ P A+ +M Y EYF Sbjct: 200 ELALASIMAARTLVEQEPNYAYVSARLLLDKLRSEVLSFVHGTPTSASQSDMATRYAEYF 259 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 YI+ G++A LL + DL LA+ LK ERD F++LGLQ LYDRYFLH++G+RIE+ Sbjct: 260 PAYIKTGIEAELLDPELGRHDLARLASALKPERDMLFQFLGLQTLYDRYFLHVHGARIEL 319 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT PQLSSCFLTTV Sbjct: 320 PQAFFMRVAMGLAMREIDREGRAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTV 379 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL GIF A+++NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLKVANDTA+ Sbjct: 380 ADDLDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAI 439 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV Q+ Sbjct: 440 AVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQD 499 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSPDE +LHDLYG F+ AYE YE +A RGE++VF+++ A LWR+MLTMLFET Sbjct: 500 GEWTLFSPDETPELHDLYGPRFKAAYEAYEAKAARGEMRVFKQVRATDLWRRMLTMLFET 559 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGSINLL H Sbjct: 560 GHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREGL 619 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KL TI TAVR+LDNVIDIN +TI +A++SN HR +GLGLMGFQ ALH+ IP AS Sbjct: 620 DQNKLKRTITTAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHVQRIPIAS 679 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 AV AD SME IS+HAISAS +LA ERG Y SF GSLW QG+ PIDS+ +L++ RD Sbjct: 680 EAAVAFADASMEIISYHAISASADLAVERGRYPSFDGSLWSQGILPIDSVAVLSKSRDGT 739 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 A+N + L W L++RV+ GMRNSN MAIAPTATI+NICGV+QSI+PSYQNL+VKSNMS Sbjct: 740 ALNASMTLDWTGLRERVRKDGMRNSNVMAIAPTATISNICGVAQSIEPSYQNLFVKSNMS 799 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDFTVVN LV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE+D WL Sbjct: 800 GDFTVVNEHLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEVDTSWL 859 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IESA+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW +GLKTTYYLRSRSAT VEKSTL Sbjct: 860 IESAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKSTL 919 Query: 917 KGVDGKLNAV---------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 KG DGKLNAV P+ PN++ L +C+ D +CE CQ Sbjct: 920 KGTDGKLNAVSASGMLAHAPIIVPNATAPDLDGVKACSIDNPDCEACQ 967 >gi|85714831|ref|ZP_01045817.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp. Nb-311A] gi|85698317|gb|EAQ36188.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp. Nb-311A] Length = 956 Score = 1249 bits (3233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/954 (62%), Positives = 738/954 (77%), Gaps = 15/954 (1%) Query: 16 PSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 PSL A P QVI+RNG V+ FD +KI+ A+ KAF+AVEG A+ S RV DI+ Sbjct: 3 PSLSAAAAMPPSEPAYQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVA 62 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-- 131 LT Q V L + + + HIEDIQDQVE +LM+S HHK+ R YVLYREER+ RA Sbjct: 63 ELTGQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKSQ 122 Query: 132 QSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189 +S +K A K L++ DG+LI+ ++KRL +V EAC+GL DVS+ +L+ET++N+ Sbjct: 123 ESKAKKGNTTAAKTVLRMKSADGSLIALDTKRLATVVVEACAGLGDVSASAILAETHRNL 182 Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 YDG+S +L A I ++RTL+E +P+YAK +AR LL+KLRRE L+ V + ++AT EM Sbjct: 183 YDGISVDELALAPILAARTLVETDPDYAKASARLLLDKLRREALSFVSGRSEQATQAEMA 242 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y +YF Y+ G+ LL + FDL LA LK ERD F+YLGLQ LYDRYFLH+ Sbjct: 243 ERYADYFRAYVRTGIDNELLDLEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHV 302 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT PQLS Sbjct: 303 RGVRFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLS 362 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLK Sbjct: 363 SCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLK 422 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 VANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLF Sbjct: 423 VANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLF 482 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+RV ++ WTLFSPDE DLHDL GK F Y YE +A RGE++V +++ AV LWR+M Sbjct: 483 MRRVEEDGMWTLFSPDETPDLHDLTGKAFTERYACYEEKAARGELRVTKQVRAVDLWRRM 542 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 LTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL++ Sbjct: 543 LTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVS 602 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 H + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN HR +GLG+MGFQ AL++ Sbjct: 603 HIKDGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGVMGFQDALNI 662 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +PYAS AV ADESME I+++AIS SVELA ERG Y S++GSLW +G+ P+DS+ L+ Sbjct: 663 LRLPYASNGAVSFADESMEAIAYYAISGSVELAAERGRYPSYQGSLWSKGILPLDSLTLV 722 Query: 730 AEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 E R + ++R+SRL WD L++ V TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQN Sbjct: 723 DEARGAAVDIDRSSRLDWDSLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQN 782 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATA Sbjct: 783 LYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATA 842 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FEID WLI++A+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW GLKTTYYLRSRSA Sbjct: 843 FEIDSSWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSA 902 Query: 909 TSVEKSTLKGVDGKLN-------AVPVTD-PNSSTHSLGIPSSCTSDTECEVCQ 954 T VEKSTLKG DGKLN A P+ +++ S G S D CE CQ Sbjct: 903 THVEKSTLKGTDGKLNAVAASVSAAPLNGHATAASASEGWKSCRIEDPTCEACQ 956 >gi|300022336|ref|YP_003754947.1| ribonucleoside-diphosphate reductase, subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299524157|gb|ADJ22626.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 956 Score = 1246 bits (3223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/929 (63%), Positives = 720/929 (77%), Gaps = 6/929 (0%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QVI+RNG VT FD SKIS A+ KAF+AVEG A+ S RV + + LT Q V L + Sbjct: 30 QVIRRNGSVTPFDASKISVALTKAFLAVEGGRAAASRRVHETVDGLTSQIVVALTRRGVQ 89 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIE+IQDQVE +LM+ HHK+ R YVLYREER RAA++ + P P + + Sbjct: 90 ERTFHIEEIQDQVELALMRGEHHKVARAYVLYREERKRERAAETAAP--IPTMPSISVKS 147 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG+L ++ RL ++EE+C+GL DVS++ +LSET +N+YDG++ +L A + ++RTL Sbjct: 148 KDGSLAPLDAARLRKLIEESCAGLADVSAEAILSETQRNLYDGITRDELADAPVLAARTL 207 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE EPNY VTAR L++KLRRE L+ V + +A EM YPEYF +I +G+ A LL Sbjct: 208 IETEPNYTFVTARLLMDKLRREALSFVAGRTDEARQSEMGERYPEYFRAFIAKGIVADLL 267 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + FDL L LK ERD F+YLGLQ LYDRYFL +G R E+PQAFFMRVAMGLA Sbjct: 268 DPELARFDLDRLGGALKPERDGIFQYLGLQTLYDRYFLQTHGIRFELPQAFFMRVAMGLA 327 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L+E ++E +A+EFY+L+S+F FMCSTPTLFN+GT PQLSSCFLTTVPDDL GIF ++++ Sbjct: 328 LREIDREAKAIEFYDLISTFDFMCSTPTLFNAGTPRPQLSSCFLTTVPDDLDGIFKSIKD 387 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDTA+AVNQGGKRKGAVC Sbjct: 388 NALLAKYSGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 447 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWHID+EEFLDLRKN GDDRRRTHDMNTA+WIPDLFM+RV ++ WTLFSPDE D Sbjct: 448 AYLETWHIDIEEFLDLRKNAGDDRRRTHDMNTAHWIPDLFMQRVAEDGQWTLFSPDETPD 507 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHDLYG F YE YE +A+R E+KV R++ AV LWR+MLTMLFETGHPWITFKDPCN+ Sbjct: 508 LHDLYGTAFAERYEAYEEKAERMEMKVARRVRAVDLWRRMLTMLFETGHPWITFKDPCNL 567 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 RSPQQH G+VHSSNLC EITLN+S++E AVCNLGSINL+AH N+ D+DKL T++TA+ Sbjct: 568 RSPQQHCGIVHSSNLCAEITLNTSNDEVAVCNLGSINLVAHVTNDGVDFDKLERTVKTAM 627 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVIDIN +TI +A++SN HR +G+GLMGFQ AL L I Y S EAV AD SME Sbjct: 628 RMLDNVIDINFYTIPEARRSNLRHRPVGMGLMGFQDALQALRINYGSEEAVAFADTSMEA 687 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDE 748 ISFHAISASV+LA ERG Y SF GSLW QG+ PIDSI LL R +L ++ +S L WD Sbjct: 688 ISFHAISASVDLAAERGRYPSFDGSLWSQGILPIDSIELLKSARGTDLRLDTSSTLDWDG 747 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+ RV+T GMRNSN MAIAPTATI+NICGV+QSI+P+++NLYVKSNMSGDFTVVN FLV Sbjct: 748 LRDRVRTTGMRNSNTMAIAPTATISNICGVAQSIEPAFRNLYVKSNMSGDFTVVNPFLVR 807 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +LK R LWDE MISDLKY DGS+G I+RIP+DLK ++ATAFEID WL+++A+RRQKWID Sbjct: 808 DLKARGLWDEVMISDLKYFDGSLGAIDRIPEDLKALYATAFEIDAHWLVDAAARRQKWID 867 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 Q QSLNLY+ P+G+KLD +YR AW GLKTTYYLRS+SAT VEKSTLKG DGKLNAV Sbjct: 868 QGQSLNLYIAAPNGRKLDALYRLAWERGLKTTYYLRSQSATHVEKSTLKGTDGKLNAVSS 927 Query: 929 TDPNSS---THSLGIPSSCTSDTECEVCQ 954 + +S+ ++ + D CE CQ Sbjct: 928 SVHHSAPENIEAMAGKACLIDDPTCEACQ 956 >gi|92119122|ref|YP_578851.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter hamburgensis X14] gi|91802016|gb|ABE64391.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14] Length = 966 Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/954 (62%), Positives = 734/954 (76%), Gaps = 15/954 (1%) Query: 16 PSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 PSL A P QVI+RNG V+ FD SKI+ A+ KAF+AVEG A+ S RV DI+ Sbjct: 13 PSLPAAAAMPSSEPAYQVIRRNGSVSPFDSSKIAVALTKAFLAVEGNSAAASRRVHDIVT 72 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT+Q V L + + + HIEDIQDQ E +LM+S HHK+ R YVLYREER+ RA Sbjct: 73 ELTDQIVASLTRRSDAGRTFHIEDIQDQAELALMRSAHHKVARAYVLYREERARERAKAQ 132 Query: 134 HSKSDAPI----APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189 S + P L++ DG++ +++RL +VEEAC+GL+ VS++ +L+ET++N+ Sbjct: 133 ESNAKKSNAAAATPALRMKSVDGSMAPLDTRRLAAVVEEACAGLEGVSAEAILTETHRNL 192 Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 YDG+S +L A I ++RTL+E +P+YAK +AR LL+KLRRE L+ + +P++AT EM Sbjct: 193 YDGISADELALAPILAARTLVETDPDYAKASARLLLDKLRREALSLIAGRPEQATQAEMT 252 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y EYF Y++ G++ LL + FDL LA LK ERD F+YLG Q LYDRYFLH+ Sbjct: 253 GRYAEYFLGYVQTGIENELLDPEIGRFDLDRLAAALKPERDLQFDYLGFQTLYDRYFLHV 312 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G+R E+PQAFFMRVA GLAL+E ++E +A+ FYNLLSSF FM STPTLFN+GT+ QLS Sbjct: 313 RGTRFELPQAFFMRVACGLALREIDREDKAIAFYNLLSSFDFMASTPTLFNAGTQRAQLS 372 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLK Sbjct: 373 SCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLK 432 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 VANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLF Sbjct: 433 VANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLF 492 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+RV ++ WTLFSP+E DLHDL GK F Y +YE +A RGE++V +++ AV LWR+M Sbjct: 493 MQRVEEDGVWTLFSPNETPDLHDLTGKAFAERYAHYEGKAARGEMRVTKQVRAVDLWRRM 552 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 LTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL+ Sbjct: 553 LTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVN 612 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 H + + D+ LA T++TA+R+LDNV+++N +TI +A+ SN HR +GLGLMGFQ AL++ Sbjct: 613 HLHDGKLDHAHLARTVKTAMRMLDNVLNVNFYTIPEARTSNLRHRPVGLGLMGFQDALNI 672 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +PYA EAV ADESME IS+ AIS SV+LA ERG Y S++GSLW +G+ P+DS+ L+ Sbjct: 673 LRLPYACDEAVSFADESMEAISYWAISGSVDLAAERGRYPSYQGSLWSKGILPLDSLALV 732 Query: 730 AEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 E R + ++R+SRL W+ L++RV T+GMRNSNCMAIAPTATI+NICGVSQSI+P+YQN Sbjct: 733 DEARGAPIDLDRSSRLDWEALRQRVMTVGMRNSNCMAIAPTATISNICGVSQSIEPAYQN 792 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DG + I+R+PDDLK ++ATA Sbjct: 793 LYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGGLSRIDRVPDDLKALYATA 852 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FEID WLI++A+RRQKWIDQAQSLNLY+ +PSGKKLD +YR AW GLKTTYYLRSRSA Sbjct: 853 FEIDSAWLIDAAARRQKWIDQAQSLNLYIADPSGKKLDALYRHAWKRGLKTTYYLRSRSA 912 Query: 909 TSVEKSTLKGVDGKLNAVPV---TDP-----NSSTHSLGIPSSCTSDTECEVCQ 954 T VEKSTLK DGKLNAV T P S S G + D CE CQ Sbjct: 913 THVEKSTLKVTDGKLNAVSASVSTAPLNGHAASVAESDGWKACRIDDPTCEACQ 966 >gi|192291020|ref|YP_001991625.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodopseudomonas palustris TIE-1] gi|192284769|gb|ACF01150.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 974 Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/941 (62%), Positives = 721/941 (76%), Gaps = 17/941 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QVI+R+G V+ FD SKI+ A+ KAF+AVEG A+ S RV D + LT+Q V L + Sbjct: 35 QVIRRSGEVSPFDASKIAVALTKAFLAVEGSNAAASRRVHDTVAELTDQIVANLTRRVGP 94 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQ E +LM+S HHK+ R YV+YREER+ RA + ++ P+AP L+ Sbjct: 95 GRTFHIEDIQDQAELALMRSEHHKVARAYVIYREERTRERAKAAAAQVK-PVAPALRTKS 153 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DGTL + +RL I+ EAC+GL VS VL+ET +N+YDG+S+ +L A I ++R Sbjct: 154 ADGTLHLIDMQRLAAIIAEACAGLDGVSVDAVLAETQRNLYDGISDDELALAPILAARIF 213 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +E EP+YAKV+AR LL+KLRRE L+ V +P +AT +M Y +YF Y++ G+ L+ Sbjct: 214 VETEPDYAKVSARLLLDKLRREALSFVEGRPHQATQAQMAERYADYFSAYVKAGIAHELI 273 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + FD+ LA +K ERD F+YLGLQ LYDRYFLH++G+R E+PQAFFMRVA G+A Sbjct: 274 DPEIGRFDVSKLAAAIKPERDLQFDYLGLQTLYDRYFLHVHGTRFELPQAFFMRVACGIA 333 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L+E ++E +A+EFY+LLSSF FM STPTLFN+GT PQLSSCFLTTVPDDL GIF ++++ Sbjct: 334 LREVDREAKAIEFYDLLSSFDFMASTPTLFNAGTLRPQLSSCFLTTVPDDLDGIFKSIKD 393 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQG++PFLKVANDTA+AVNQGGKRKGAVC Sbjct: 394 NALLSKYAGGLGNDWTHVRGLGAHIKGTNGESQGIVPFLKVANDTAIAVNQGGKRKGAVC 453 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV QN WTLFSPDE D Sbjct: 454 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQNGPWTLFSPDETPD 513 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHDL G+ F Y YE +A RGE++V ++I AV LWR+MLTMLFETGHPWITFKDPCN+ Sbjct: 514 LHDLTGRAFAERYAFYEARAARGELRVTKQIRAVDLWRRMLTMLFETGHPWITFKDPCNL 573 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 RSPQQH GVVHSSNLCTEITLN+S E AVCNLGS+NL+ H + + D +L T+ TA+ Sbjct: 574 RSPQQHCGVVHSSNLCTEITLNTSEREVAVCNLGSVNLVNHVVDGRLDCARLERTVTTAM 633 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N +TI +A+ SN HR +GLGLMGFQ AL++L +PYAS EAV ADESME Sbjct: 634 RMLDNVIDVNFYTIPEARASNLRHRPVGLGLMGFQDALNILRLPYASDEAVAFADESMEA 693 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDE 748 I++ +ISASV+LA ERG Y+S+ GSLW QG+ P+DSI LL E R + ++R SRL W+ Sbjct: 694 IAYWSISASVDLAAERGRYASYDGSLWSQGILPLDSIDLLDEARGAAIEVDRGSRLDWEA 753 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+KRV GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSNMSGDFTVVN+ LV Sbjct: 754 LRKRVTATGMRNSNVMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNTHLVR 813 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEID WLIE+A+RRQKWID Sbjct: 814 DLKGRGLWDEVMISDLKYFDGSLGQIDRVPDDLKALYATAFEIDATWLIEAAARRQKWID 873 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QAQSLNLYL PSGK LD +YR AW GLKTTYYLRSRSAT VEKSTL+G DGKLNAV Sbjct: 874 QAQSLNLYLANPSGKTLDALYRLAWRRGLKTTYYLRSRSATHVEKSTLRGTDGKLNAVSA 933 Query: 929 -------TDP-------NSSTHSLGIPSSCT-SDTECEVCQ 954 +P N + G +C D CE CQ Sbjct: 934 IILPTASAEPSRSNGAGNGHAATEGWGKACAIDDPGCEACQ 974 >gi|220935778|ref|YP_002514677.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219997088|gb|ACL73690.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 971 Score = 1230 bits (3183), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/931 (62%), Positives = 719/931 (77%), Gaps = 9/931 (0%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-NKS 89 VI+RNG VT+FD SKI AI KAF+AVEG A+ S R+ DI+ L EQ L + S Sbjct: 43 VIRRNGKVTAFDASKIKVAITKAFLAVEGGNAAASRRIHDIVAELAEQVCENLFRRAGGS 102 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK--LKI 147 A+ VHIEDIQDQVE +LM+ GHHKI R YVLYRE+++ RAA++ ++ A A + + Sbjct: 103 AVTVHIEDIQDQVELALMRGGHHKIARAYVLYREQQAQKRAAEAATRKPARQAEAAVIHV 162 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 DGT ++ RL +VEEAC+GL+ V +++L+E +N++DG++E D+ TAL+ S+R Sbjct: 163 TRPDGTRAPLDTARLVKVVEEACAGLEAVDGQLILNEAQRNLFDGVAEKDVGTALVMSAR 222 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 LIEKEPNY++VTAR L++ LRRE L+ + PQ AT EM YPEYF Y++ + Sbjct: 223 VLIEKEPNYSQVTARLLMDTLRREALSFIAGLPQAATQAEMTQRYPEYFKAYVKRAAELE 282 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + +DL L LK ERD F YLGLQ LYDRYF+H G R E+PQAFFMRVAMG Sbjct: 283 LLDSELTRYDLDRLGAALKPERDLQFTYLGLQTLYDRYFIHSGGVRFELPQAFFMRVAMG 342 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA+ E ++E RA+EFYNLLSSF FM STPTLFNSGT PQLSSC+LTTVPDDL GIFGA+ Sbjct: 343 LAIHEIDREGRAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFGAI 402 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 403 KDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 462 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+DVEEF++LRKNTGDDRRRTHDMN+ANWIPDLFMKRV + WTLFSP+E Sbjct: 463 VCAYLETWHVDVEEFIELRKNTGDDRRRTHDMNSANWIPDLFMKRVAEEGEWTLFSPNET 522 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G+ FE Y YE +A RGEIKVF+K+ AV LWRKML MLFETGHPW+TFKDPC Sbjct: 523 PDLHDLVGEAFEQRYAEYEAKAARGEIKVFKKLKAVDLWRKMLAMLFETGHPWMTFKDPC 582 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL AH N + +KL T+ T Sbjct: 583 NLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVDENGLNLEKLERTVST 642 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVID N +++ +A++SN HR +GLG+MGFQ AL+ IPYAS +AVE AD SM Sbjct: 643 AMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDALYQQRIPYASEDAVEFADRSM 702 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS-RLPW 746 E +S++AI AS +LA+ERG Y SF GSLW QGV PIDSI LLA+ R + TS W Sbjct: 703 EAVSYYAIKASTDLAEERGRYQSFDGSLWSQGVLPIDSIELLAKSRGQYLQQDTSMTFDW 762 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ RVKT+GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N L Sbjct: 763 DSLRDRVKTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPNL 822 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 VN+LK R LWDE M++DLKY+DGS+ I+R+P DLK+++ATAFE+D WL+E+ASRRQKW Sbjct: 823 VNDLKARKLWDEVMVNDLKYYDGSVQPIDRVPADLKQLYATAFELDARWLVEAASRRQKW 882 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD--GKLN 924 +DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKTTYYLRS AT VEKST+ KLN Sbjct: 883 LDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTVADASRANKLN 942 Query: 925 AVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 A V +++ + P C+ D ECE CQ Sbjct: 943 A--VKGADAAAPATEAPKMCSILDPECEACQ 971 >gi|289208616|ref|YP_003460682.1| ribonucleoside-diphosphate reductase, subunit alpha [Thioalkalivibrio sp. K90mix] gi|288944247|gb|ADC71946.1| ribonucleoside-diphosphate reductase, alpha subunit [Thioalkalivibrio sp. K90mix] Length = 964 Score = 1211 bits (3133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/952 (60%), Positives = 722/952 (75%), Gaps = 15/952 (1%) Query: 15 FPSLAYPFPEKIKGV----QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70 +P A P E + QVI+RNG VT FD SKI A+ KAF+AVEG A+ S R+ + Sbjct: 16 YPPQAEPSAEVLATSPGQHQVIRRNGKVTGFDASKIEVAVTKAFLAVEGGNAAASRRIHE 75 Query: 71 IIKNLTEQTVTRLLQH-NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 + K + Q V L + + VHIEDIQDQVE +LM+ GHHK+ R YV+YRE+++ R Sbjct: 76 VSKEVAGQVVDSLFRRAGTQGMTVHIEDIQDQVELALMRGGHHKVARAYVIYREQQAQKR 135 Query: 130 AAQSHSKS--DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187 AA++ +S + A L + DGT + RL+ +V EAC G++ V + +L+E + Sbjct: 136 AAEAAEQSPEEQEAAAALNVTRADGTQAPLDEARLQAVVAEACDGIEHVDGEKILTEARR 195 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N++DG++E D+ TAL+ ++R +IEKEPNY++VTAR L++ LRRE L+ V+ +P++AT + Sbjct: 196 NLFDGVAEKDVATALVMAARVMIEKEPNYSEVTARLLMDALRREALSFVHGRPEEATQAQ 255 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 + Y EYF YI L+ + +DL L +K ERD F YLGLQ LYDRYF+ Sbjct: 256 LAERYAEYFGAYIRRAADLELVDSELTRYDLDKLGAAIKPERDLQFTYLGLQTLYDRYFI 315 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H +G+R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM STPTLFNSGT PQ Sbjct: 316 HSDGTRFELPQAFFMRVAMGLAINEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQ 375 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LT+VPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGV+PF Sbjct: 376 LSSCYLTSVPDDLDGIYSAIRDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPF 435 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF++LRKNTGDDRRRTHDMN+ANWIPD Sbjct: 436 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFIELRKNTGDDRRRTHDMNSANWIPD 495 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV ++ WTLFSP+E DLHDL G +FE Y YE +A RGE++V + + AV LWR Sbjct: 496 LFMKRVAEDGDWTLFSPNETPDLHDLVGTDFEKRYCEYEEKAARGELRVHKTMKAVDLWR 555 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 KML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL Sbjct: 556 KMLGMLFETGHPWMTFKDPCNLRSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSINL 615 Query: 608 LAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 AH + D DKL T+ TA+R+LDNVID N +++ +A++SN HR +GLG+MGFQ A Sbjct: 616 AAHINEAGELDQDKLEQTVNTAMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDA 675 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L+ L +PYAS AVE AD SME +S++AI AS +LA+ERG Y SF GSLW QG+ PIDS+ Sbjct: 676 LYKLRMPYASEAAVEFADTSMEAVSYYAIKASTDLAEERGRYESFPGSLWSQGILPIDSV 735 Query: 727 GLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 LAE R D L M+ T RL WD+L+KRVK +GMRNSN MAIAPTATI+NICGVSQSI+P+ Sbjct: 736 EKLAETRGDYLQMDTTQRLEWDKLRKRVKKVGMRNSNTMAIAPTATISNICGVSQSIEPT 795 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 YQNL+VKSN+SG+FTV+N +LV +LK R+LWDE M++DLKY+DGS+ ++R+PDDLK ++ Sbjct: 796 YQNLFVKSNLSGEFTVINPYLVRDLKDRELWDEVMVNDLKYYDGSVQPLDRVPDDLKALY 855 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ATAFE+D WL+E+ASRRQKWIDQAQSLNLY+ EPSG KLD +Y+ AW+ GLKTTYYLRS Sbjct: 856 ATAFELDTRWLVEAASRRQKWIDQAQSLNLYMAEPSGPKLDALYKLAWVRGLKTTYYLRS 915 Query: 906 RSATSVEKSTLKGVD--GKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 AT VEKST+ KLNAV S + P +C+ D +CE CQ Sbjct: 916 MGATHVEKSTVADSSRANKLNAVSGGQQASEPEA---PKACSILDPDCEACQ 964 >gi|300784784|ref|YP_003765075.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis mediterranei U32] gi|299794298|gb|ADJ44673.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis mediterranei U32] Length = 972 Score = 1193 bits (3087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/901 (62%), Positives = 695/901 (77%), Gaps = 6/901 (0%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 ++VI+R+G V+ FD KIS A+ KAF+AVEG A+ S RV ++ LT+Q T LL+H Sbjct: 17 AIRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVVAELTQQVETTLLRHA 76 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 +HIE IQD VE +LM+ HHK+ R YVLYR+ER+ R A + ++A L + Sbjct: 77 GPETALHIEQIQDIVELALMRGEHHKVARAYVLYRDERAKAREAVKPATTEA----TLNV 132 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 DG L + R+ +V EA +GL+DV+++ VL+E +N+YDG+S +L A I ++R Sbjct: 133 KGTDGVLRPLDWARVSHVVGEAVAGLEDVTAEPVLAEAKRNLYDGISADELALAQIMAAR 192 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+E+EPNY+ V+AR LL+KLR E L+ + P+ A+ EM YP YF Y+ ++ Sbjct: 193 VLVEQEPNYSYVSARLLLDKLRGEALSYLAGTPRLASQDEMAAEYPAYFRAYLRRAIELE 252 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 L+ + FDL + ++ ERD F +LGLQ LYDRYF H +G+R E+PQAFFMRVAMG Sbjct: 253 LVDAELQRFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHDGTRFELPQAFFMRVAMG 312 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA++E ++E RA+EFY LLSSFHFM STPTLFNSGT PQLSSCFLTTV DDL IF A Sbjct: 313 LAIREGDREARAIEFYELLSSFHFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIFQAY 372 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+ANDTAVAVNQGGKRKGA Sbjct: 373 KNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGA 432 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV +A WTLFSP+E Sbjct: 433 ACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPNET 492 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDLYG EF Y YE ADRGEIKVFR+ AV LWR+MLTMLFETGHPWITFKDPC Sbjct: 493 PDLHDLYGNEFATRYREYEAAADRGEIKVFRRARAVDLWRRMLTMLFETGHPWITFKDPC 552 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++SEE AVCNLGS+NLL H D +L T+RT Sbjct: 553 NLRSPQQHVGVVHSSNLCTEITLNTNSEEVAVCNLGSVNLLKHVTPEGLDTKRLEKTVRT 612 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +TI +A++SN HR +GLG+MGFQ AL + +P+AS EAV+ AD SM Sbjct: 613 AVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFEIGVPFASEEAVKFADVSM 672 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745 E +S++AISAS +LA+ERG Y SF+GSLW +G+ PIDS+ LL + R D L ++ +S L Sbjct: 673 EHLSYYAISASTDLAEERGQYQSFEGSLWSKGILPIDSLQLLIDARQGDGLDVDTSSTLD 732 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNL+VKSNMSGDFTVVN Sbjct: 733 WAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLFVKSNMSGDFTVVNPH 792 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI+ W++++ S RQK Sbjct: 793 LVRSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWIVDAGSVRQK 852 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ PSG+KLD +YR AW GLKTTYYLR++SAT VEKSTL+G DGKLNA Sbjct: 853 WIDQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKTTYYLRAQSATHVEKSTLRGTDGKLNA 912 Query: 926 V 926 V Sbjct: 913 V 913 >gi|88812073|ref|ZP_01127325.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus mobilis Nb-231] gi|88790577|gb|EAR21692.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus mobilis Nb-231] Length = 955 Score = 1190 bits (3079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/943 (59%), Positives = 714/943 (75%), Gaps = 14/943 (1%) Query: 14 AFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 + P+ ++ PE + + + VI+R+G V+ FDP KI+ A+ KA++AVEG AS S R+++ + Sbjct: 25 SLPAESFEHPESRARDLHVIRRDGQVSGFDPGKITVAMTKAYLAVEGANASGSQRIRETV 84 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 + L Q V L + + VHIEDIQDQVE +LM++G H++ R YVLYREER+ RA Q Sbjct: 85 ERLVGQVVEALTRRQPAGGRVHIEDIQDQVELALMRAGEHRVARAYVLYREERA--RARQ 142 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 ++ A A +L++ DG + + RL IVEE+C + V + +++ET++N+YDG Sbjct: 143 DQAEPVAAQAERLRVTRADGGQVPLDEARLRRIVEESCQRIAGVEPEAIVAETHRNLYDG 202 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + E++L TAL+ +RTLIE+EP Y+ V A LL+ LRRE L+ + AT EM Y Sbjct: 203 IPEAELGTALVMCARTLIEREPGYSYVAAGLLLDTLRREALSFLGGVEAGATFEEMAKRY 262 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 P+YF Y+ GV+ LL +++FDL LA L+ RD F YLGLQ LYDRYFLH +G+ Sbjct: 263 PDYFIAYVRRGVELELLDPRLLEFDLERLARVLEPARDRQFGYLGLQTLYDRYFLHYDGT 322 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E+PQAFFMRVAMGLAL E ++E+RA EFY LL+SF FM STPTLFN+GTR PQLSSC+ Sbjct: 323 HFELPQAFFMRVAMGLALNEIDREERAAEFYRLLASFDFMSSTPTLFNAGTRRPQLSSCY 382 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L+T+PDDL GI+ A+++NA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKVAN Sbjct: 383 LSTIPDDLDGIYSAIRDNALLSKFAGGLGNDWTPVRALGAHIKGTNGRSQGVVPFLKVAN 442 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGG+R+GAVCAYLE WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDLFM+R Sbjct: 443 DTAVAVNQGGRRRGAVCAYLEIWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLFMRR 502 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V A WTLFSPDE DLHDLYG FE Y YE QA+RGE++ ++++SAVALWR+ML+M Sbjct: 503 VIDEADWTLFSPDETPDLHDLYGAAFEAHYREYEAQAERGELRNYKRVSAVALWRRMLSM 562 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKD CN RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGS+NL AH Sbjct: 563 LFETGHPWITFKDACNARSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVG 622 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L T+RTA+R+LDNVIDIN +++ +A+++N HR +GLG+MGFQ AL+ L + Sbjct: 623 AEGIDAARLERTVRTAMRMLDNVIDINWYSVPQARRANMRHRPVGLGVMGFQDALYRLGL 682 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS EAV+ AD SME IS++AI AS ELAQERGAY+SF GSLW +G+ PIDSI LLAE Sbjct: 683 PYASREAVDFADRSMETISYYAIQASSELAQERGAYASFAGSLWSRGILPIDSIRLLAEQ 742 Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R E L M+ ++ L WD L++R++ GMRNSNC+AIAPTATIANI GVS SI+P+Y+NLYV Sbjct: 743 RGEPLTMDTSTTLDWDALRERIRRTGMRNSNCLAIAPTATIANIVGVSPSIEPTYRNLYV 802 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+SG+FTVVN LV LK R LWD +++DLKY DGS+ IER+P+ +K ++ TAFEI Sbjct: 803 KSNLSGEFTVVNPHLVEALKARGLWDAVLVNDLKYFDGSVQAIERVPEPIKALYTTAFEI 862 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 DP WL+E+ASRRQKW+DQ+QSLNLY+ E SG KLD +YR AW GLKTTYYLRS AT V Sbjct: 863 DPNWLVEAASRRQKWLDQSQSLNLYMAEASGPKLDALYRNAWRRGLKTTYYLRSLGATHV 922 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 EKST+ DG LN V + P+ D ECE CQ Sbjct: 923 EKSTV--ADGALNRV--------AAAPAAPACAVDDPECEACQ 955 >gi|192361574|ref|YP_001982049.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio japonicus Ueda107] gi|190687739|gb|ACE85417.1| ribonucleoside reductase, large chain [Cellvibrio japonicus Ueda107] Length = 978 Score = 1184 bits (3064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/951 (59%), Positives = 717/951 (75%), Gaps = 28/951 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V FD SKI+ A+ KAF+AVEG A+ S RV++ + NLT+Q + Sbjct: 31 LRVIKRNGTVVPFDASKIAIAMTKAFLAVEGGTAAASTRVRETVDNLTKQITATFKRRMP 90 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH-SKSDA-PIAPKLK 146 S +HIE+IQDQVE LM++G K+ R+YVLYREE + +R AQ +K++A P P + Sbjct: 91 SGGTIHIEEIQDQVELILMRAGEQKVARDYVLYREEHARLRRAQKEVNKTEADPDYPAMS 150 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + DGT + R+ IV EAC+GL V K +L E +N+YDG++E D+ T+L+ ++ Sbjct: 151 VTQADGTRAPLDIARMRTIVSEACAGLAGVEEKAILDEAMRNLYDGVAEKDVNTSLVITA 210 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTL+EKEPNY TAR LL+KLR E L + P AT +M+ Y YI++GV+ Sbjct: 211 RTLVEKEPNYTYATARLLLDKLRAEALGFLGVAPS-ATQSDMELYYARALPVYIQKGVEL 269 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 L+ +++FDL L L +RD F YLGLQ LYDRYF+H + +RIE+PQ FFMRVAM Sbjct: 270 ELISPELLNFDLDKLGKALIADRDLQFTYLGLQTLYDRYFIHSDSTRIELPQIFFMRVAM 329 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL+E ++E+RA+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPDDL+GI+GA Sbjct: 330 GLALQEDKREERAIEFYRLLSSFDYMSSTPTLFNSGTLRPQLSSCYLTTVPDDLHGIYGA 389 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKG Sbjct: 390 IQDNAMLSKFAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKG 449 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV ++ WTLFSP++ Sbjct: 450 AVCAYLETWHMDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEDQEWTLFSPND 509 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V DLHDLYGK FE YE+YE+ A +G++++F+ + A+ LWRKML MLFETGHPWITFKDP Sbjct: 510 VPDLHDLYGKAFEERYEHYEQLAAQGKVRLFKTVRALDLWRKMLGMLFETGHPWITFKDP 569 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 CN+RSPQQH GVVHSSNLCTEITLN+ + +E AVCNLGS+NL H N + D KL T+ Sbjct: 570 CNLRSPQQHAGVVHSSNLCTEITLNTKAGDEIAVCNLGSVNLAQHIVNGKLDLAKLEKTV 629 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TA+R+LDNVIDIN + ++ +K+SN HR IGLG+MGFQ AL+ I Y+S AV+ AD Sbjct: 630 STAIRMLDNVIDINYYAVDTSKQSNLRHRPIGLGIMGFQDALYEQRIAYSSQAAVDFADT 689 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743 SME +S++AI AS +LAQERG YS+F+GSLW +GV PIDSI +LA+ R E + ++R+ Sbjct: 690 SMEAVSYYAIKASCQLAQERGKYSTFEGSLWSKGVLPIDSIDILAQNRGENYIKVDRSKT 749 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 WD L+ VKT GMRNSN MAIAPTATI+NI GV+QSI+P+YQNLYVKSN+SG+FTVVN Sbjct: 750 FDWDSLRTEVKTKGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGEFTVVN 809 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV++LK R LWD M++DLKY++GS+ I+RIP+D+K I+ATAFE++P W++ESASRR Sbjct: 810 PYLVHDLKDRGLWDSVMVNDLKYYEGSVQKIDRIPEDMKAIYATAFEVEPKWIVESASRR 869 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLNLY+ +GKKLD YR AW GLKTTYYLR+ +AT+ EKST+ G L Sbjct: 870 QKWIDQAQSLNLYIAGANGKKLDITYRMAWYSGLKTTYYLRALAATTTEKSTIN--TGAL 927 Query: 924 NAVPVT-------------------DPNSSTHSLGIPSSCTSDT-ECEVCQ 954 NAV T + S + +P +C+ D +CE CQ Sbjct: 928 NAVSATGNSGLSAAPAAAKPVVADIEEASFAEAAPVPKACSIDNPDCEACQ 978 >gi|226227155|ref|YP_002761261.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas aurantiaca T-27] gi|226090346|dbj|BAH38791.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas aurantiaca T-27] Length = 957 Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/929 (60%), Positives = 717/929 (77%), Gaps = 4/929 (0%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QVI+RN ++ FDPSKI+ A+ KAF+AVEG A+ S RV+DI++ V L +H + Sbjct: 29 QVIRRNRTLSPFDPSKIAVAMTKAFVAVEGSSAATSARVRDIVERRCVSVVEALTRHADA 88 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK-LKIM 148 +HIE+IQDQVE +LM+ GHHK+ R YVLYREER+ +R ++ +A ++ Sbjct: 89 QRALHIEEIQDQVELALMRGGHHKVARAYVLYREERARLRRESGAEETTPGVATSTVRFR 148 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L + + L +++++AC GL VS+ VL ET +N+YDG++ +L A I ++RT Sbjct: 149 TATGELRTIDQGHLGLVIDDACDGLDGVSAVSVLDETLRNIYDGITADELSLAPILAART 208 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E EPNYA V+AR LLE+LR EVL+ ++ + +A +M Y +YF ++ G+ L Sbjct: 209 LVETEPNYAYVSARLLLERLRAEVLSGIHGQEVEARPADMTRHYVDYFPLFVARGIDTGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + FDL LA+ L+ ERD AF YLGLQ LYDRY LH +G R+E+PQ FFMRVAMGL Sbjct: 269 LDPELARFDLHRLASALRPERDLAFRYLGLQTLYDRYLLHNDGVRLELPQTFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT QLSSCFLTTVPDDL GIF +++ Sbjct: 329 ALREVDREARAIEFYELLSSFDFMCSTPTLFNSGTPRAQLSSCFLTTVPDDLDGIFKSVK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+LAKYSGGLGNDW+ VRGLG++I GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 389 DNALLAKYSGGLGNDWSRVRGLGSYIRGTNGRSQGVVPFLKVANDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV ++ WTLFSPDEV Sbjct: 449 CAYLETWHIDIEDFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVEEDGDWTLFSPDEVP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDLYG+ F Y +E +A+RGE+ V +++ AV LWR+MLTMLFETGHPWITFKDPCN Sbjct: 509 DLHDLYGRAFAERYVQHEIRAERGEVTVHKRVKAVDLWRRMLTMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S E AVCNLGS+NL H + D +LA+T+RTA Sbjct: 569 LRSPQQHTGVIHSSNLCTEITLNTSDSEVAVCNLGSVNLANHISGGGIDRARLANTVRTA 628 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +TI +A++SN HR +GLG+MGFQ ALH+L +PYAS A+ ADESME Sbjct: 629 VRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALHMLRVPYASEAAIRFADESME 688 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWD 747 F+S+ AI+AS +LA ERG+Y SF GSLW +G+ PIDS+ LL R+ L +R+SRL W Sbjct: 689 FLSYEAIAASSDLAVERGSYGSFNGSLWQRGILPIDSLALLDASREGRLECDRSSRLDWS 748 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L++RV+T G+RNSN +AIAPTATI+NICGVSQSI+PSY+NL+VKSNMSG+FT VN +LV Sbjct: 749 SLRERVQTQGIRNSNLLAIAPTATISNICGVSQSIEPSYRNLFVKSNMSGEFTEVNEYLV 808 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK R LWDE M+ DLKY DGS+G I+R+P+DLK+++ TAFE+D WLIE+A+RRQKWI Sbjct: 809 QDLKSRGLWDEVMVGDLKYFDGSLGPIDRVPEDLKQLYMTAFEVDCAWLIEAAARRQKWI 868 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLNLY+ P+G++LD +YR AW GLKTTYYLRS++AT VEKSTL DGKLNAV Sbjct: 869 DQAQSLNLYVARPNGRQLDTLYRLAWRRGLKTTYYLRSQAATHVEKSTLTRTDGKLNAVA 928 Query: 928 VTDPN--SSTHSLGIPSSCTSDTECEVCQ 954 V S+ ++ P+ + +CE CQ Sbjct: 929 VAAAQTVSAIEAVTAPACSIDNPDCEACQ 957 >gi|254282207|ref|ZP_04957175.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [gamma proteobacterium NOR51-B] gi|219678410|gb|EED34759.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [gamma proteobacterium NOR51-B] Length = 961 Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/941 (59%), Positives = 711/941 (75%), Gaps = 10/941 (1%) Query: 19 AYPFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77 A P G ++VIKRNG V +F+ SK+S AI KAF+AVEG A+ S R+ + + LTE Sbjct: 26 ASPLAATAPGQLRVIKRNGTVVAFEDSKVSVAITKAFLAVEGGTAAASSRIHETVAKLTE 85 Query: 78 QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH-SK 136 Q V + S +HIEDIQDQVE +LM++G HKI R+YV+YRE R+ RAA++ S Sbjct: 86 QVVATFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYREARAQERAAKAALSP 145 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 A ++ ++ DG+ + +R+ IV EAC GL DVS ++ E +N+YDG++ Sbjct: 146 ESQQAAERINVVQADGSRSPLDIERVRTIVAEACEGLADVSEAAIIDEALRNLYDGVAAE 205 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 ++ TAL+ ++RTLIE+EPNY+ AR LL+ LR E L+ + + AT +M YP Sbjct: 206 EVSTALVITARTLIEQEPNYSYAAARLLLDNLRAEGLSFM-GVAELATQQDMTIHYPAAL 264 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 +I+ G++ LL + DFDL L + L ERD F YLGLQ LYDRYF+H + +R E+ Sbjct: 265 KAFIKRGIELELLAPDLQDFDLEELGSALLPERDLQFSYLGLQTLYDRYFIHSDNTRFEL 324 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRVAMGLA +E K RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTV Sbjct: 325 PQIFFMRVAMGLAAREEAKNARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTV 384 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQG++PFLKV NDTAV Sbjct: 385 PDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGIVPFLKVVNDTAV 444 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + Sbjct: 445 AVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDD 504 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSP++V DLHDLYGK FE Y+ YE A GE+K+ + + A +LWRKML M+FET Sbjct: 505 GDWTLFSPNDVPDLHDLYGKAFEERYQQYEAMAASGELKLHKTLKAQSLWRKMLGMIFET 564 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL H N Sbjct: 565 GHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIENGVL 624 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + DKL STIRTA+R+LDNVIDIN +++ +A++SN HR IG+G+MGFQ AL+ L + Y S Sbjct: 625 NLDKLRSTIRTAIRMLDNVIDINYYSVPQAEQSNFRHRPIGMGVMGFQDALYKLDVAYGS 684 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 +AV AD+SME IS++AI AS ELA+ERG+YSS++GSLW QG+FP DS+ LL + R E Sbjct: 685 DQAVSFADQSMEAISYYAIEASSELAEERGSYSSYEGSLWSQGIFPHDSLDLLIQHRGED 744 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + +NR + W LK +V GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN Sbjct: 745 YIQVNRDQSMDWAPLKAKVAANGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSN 804 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTVVN +LV +LK R LWD+ M++DLKY+DGS+ I+RIPDDLK +ATAFE++P Sbjct: 805 LSGEFTVVNPYLVKDLKARGLWDKVMVNDLKYYDGSVQAIDRIPDDLKAKYATAFEVEPR 864 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 WL++SASRRQKWIDQAQSLNLY++ SGKKLD YR AW GLKTTYYLRS +AT EKS Sbjct: 865 WLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWFNGLKTTYYLRSLAATGTEKS 924 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 T++ GKLNA V+ +++ +P +C+ D +CE CQ Sbjct: 925 TVES--GKLNA--VSSGSATPQPAPVPQACSLDDPDCEACQ 961 >gi|110833572|ref|YP_692431.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax borkumensis SK2] gi|110646683|emb|CAL16159.1| ribonucleoside reductase [Alcanivorax borkumensis SK2] Length = 962 Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 569/962 (59%), Positives = 722/962 (75%), Gaps = 24/962 (2%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P+ D N D+ S+A P +++ VIKRNG V +D KI+ AI KAF+AVEG A Sbjct: 15 PASDSNDQDQ----SIASTAPGQLR---VIKRNGKVVGYDDDKITVAISKAFLAVEGGTA 67 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YVLYR Sbjct: 68 AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127 Query: 123 EERSDVRAAQSHSKSDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS 178 E+R+ RAA+ S +D P AP + + M+DG+ + RLE ++ ACSGL+DV++ Sbjct: 128 EQRASKRAAEQKS-TDLP-APTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNA 185 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 +++ET KN+YDG+S D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L + + Sbjct: 186 DKIITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEALQFL-R 244 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++A+H EM LY + YI +G++ LL + ++DL L L RD F YLGL Sbjct: 245 VAERASHDEMNALYSDALKAYISKGIELELLSPQLAEYDLDALGAALDGNRDLQFSYLGL 304 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYF+H N +RIE+PQ FFMRVAMGLA +E +E RA+EFYNLLSSF +M STPTL Sbjct: 305 QTLYDRYFIHHNDTRIELPQCFFMRVAMGLAAEEDNREARAIEFYNLLSSFDYMSSTPTL 364 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FN+GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTN Sbjct: 365 FNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTN 424 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 G+SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 425 GRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHD 484 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MN+ANWIPDLFMKRV WTLFSP++ DLHDLYG+ FE AY YE + GE+K+F+ Sbjct: 485 MNSANWIPDLFMKRVINEEDWTLFSPNDTPDLHDLYGEAFEKAYTEYEAKTRSGELKLFK 544 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 ++ A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE A Sbjct: 545 RLPAINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIA 604 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNLGS+NL H N + +KL STI TAVR+LDNVIDIN +++ +AK+SN HR +GL Sbjct: 605 VCNLGSVNLAQHVDENGLNIEKLQSTINTAVRMLDNVIDINYYSVPQAKRSNMKHRPVGL 664 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+MGFQ AL+ I YAS +AV AD SME +S++AI AS +LA+ERGAY +F GSLW Q Sbjct: 665 GIMGFQDALYKQGISYASSDAVTFADTSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQ 724 Query: 719 GVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G+ PIDSI +L + R E ++R+ L WD ++ K GMRNSN MAIAPTATIANI Sbjct: 725 GILPIDSIDILVKQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANIT 783 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVSQSI+P+YQNLYVKSN+SG+FTVVN +LV LK+R LWD M++DLKY+DGS IER Sbjct: 784 GVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVKALKERGLWDNVMVNDLKYYDGSAQPIER 843 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 IP DLK+ TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD Y+ AWL+G Sbjct: 844 IPADLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLG 903 Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAV---PVTDPNSSTHSLGIPSSCTSD-TECEV 952 LKTTYYLR+ AT EKST+ DGKLN V P T P + +P +C+ D +CE Sbjct: 904 LKTTYYLRAIGATQTEKSTIS--DGKLNQVSSGPET-PAEFNQAADVPKACSIDEPDCEA 960 Query: 953 CQ 954 CQ Sbjct: 961 CQ 962 >gi|53804298|ref|YP_114078.1| ribonucleotide-diphosphate reductase subunit alpha [Methylococcus capsulatus str. Bath] gi|53758059|gb|AAU92350.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylococcus capsulatus str. Bath] Length = 969 Score = 1183 bits (3060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 570/942 (60%), Positives = 708/942 (75%), Gaps = 18/942 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 V+VI+RNG VT FD +KIS AI KAF+AVEG A+ S R+ + ++ LT+ V LL+ Sbjct: 30 VRVIRRNGKVTGFDAAKISVAITKAFLAVEGGNAAASRRIHESVEELTDLVVRALLRRLP 89 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKI 147 +HIEDIQDQVE +LM++GH K+ R YVLYREER+ +RA Q+ K+ +++ Sbjct: 90 GGGTIHIEDIQDQVELALMRAGHQKVARAYVLYREERARLRAEKQNEGKAQGGAEDVVQV 149 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ++DGT ++ RL +VEEAC GL DV ++ ET +N++DG+ E ++ L+ ++R Sbjct: 150 TLEDGTRKPLDTARLRHVVEEACRGLSDVEPAWIIEETRRNLFDGVPEKEVAPTLVMTAR 209 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T IE+E NY+ V AR LL+ LRRE L+ + AT EM Y EYF Y++ GV+ Sbjct: 210 TRIEQESNYSYVAARLLLDALRREALSFLGHGAVSATQDEMSERYGEYFKDYVKRGVELE 269 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + FDL L LK ERD F YLGLQ LYDRYF+H R E+PQAFFMRVAMG Sbjct: 270 LLSPELARFDLQRLGEALKPERDLQFNYLGLQTLYDRYFIHSGDIRFELPQAFFMRVAMG 329 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA++E ++E+RA+EFY+LLSSF FM STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 LAIQEVDREERAIEFYDLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDDLDGIYSAI 389 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 390 KDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 449 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV + WTLFSP++ Sbjct: 450 VCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEEREWTLFSPNDT 509 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G+ FE Y+ YE +ADRGEIK+++++ AV LWRKML+MLFETGHPW+ FKDPC Sbjct: 510 PDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGHPWLAFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIR 626 N+R QH GVVHSSNLCTEITL+++ E AVCNLGS+NL AH + D +KL TI Sbjct: 570 NLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHITPDGALDTEKLQRTIA 629 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 T +R+LDNVIDIN +++ +A++SN HR +GLG+MGFQ AL+ L +PYAS EAV AD S Sbjct: 630 TGMRMLDNVIDINYYSVPQARRSNLRHRPVGLGIMGFQDALYKLRLPYASQEAVAFADLS 689 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745 ME +S++AI AS +LA ERG YSSF GSLW +G+ PIDSI LL E R L M+R+ L Sbjct: 690 MEAVSYYAIQASCDLAAERGRYSSFDGSLWSRGILPIDSIALLEEGRGGYLQMDRSQTLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L++RV+T+GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTVVN + Sbjct: 750 WNALRERVRTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVVNPY 809 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK LWD MI+DLKY+DGS+ IERIP+ LK+++ATAFEID WLIE+ SRRQK Sbjct: 810 LVRDLKTLGLWDAVMINDLKYYDGSVQKIERIPETLKQLYATAFEIDARWLIEAGSRRQK 869 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 W+DQAQSLNLYL EPSGKKLD +Y+ AW+ GLKTTYYLRS AT VEKST DGKLNA Sbjct: 870 WLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKTTYYLRSLGATHVEKST--AFDGKLNA 927 Query: 926 V---PVTDPNSSTHSLGI---------PSSC-TSDTECEVCQ 954 V P+ D L P +C D CE CQ Sbjct: 928 VKTDPIDDAIPGLRPLETVYADTRPAEPKACLIDDPTCEACQ 969 >gi|254428366|ref|ZP_05042073.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Alcanivorax sp. DG881] gi|196194535|gb|EDX89494.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Alcanivorax sp. DG881] Length = 962 Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/959 (59%), Positives = 720/959 (75%), Gaps = 18/959 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P+ D N D+ SLA P +++ VIKRNG V S+D KI+ AI KAF+AVEG A Sbjct: 15 PASDSNDQDQ----SLASTAPGQLR---VIKRNGKVVSYDDDKITVAISKAFLAVEGGTA 67 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YVLYR Sbjct: 68 AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127 Query: 123 EERSDVRAAQSHSKSDAPI-APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 E+++ RAA+ S AP + + M+DG+ + RLE ++ ACSGL+DV++ + Sbjct: 128 EQQASKRAAEHSSDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADKI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET KN+YDG+S D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L + + Sbjct: 188 ITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEALQFL-NVAE 246 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 +A+H EM LY E YI +G++ LL + ++DL L L RD F YLGLQ L Sbjct: 247 RASHDEMNALYGEALKAYIGKGIELELLSPQLAEYDLDKLGAALDGNRDLQFSYLGLQTL 306 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYF+H N +RIE+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+ Sbjct: 307 YDRYFIHHNDTRIELPQCFFMRVAMGLAVEEDNREARAIEFYNLLSSFDYMSSTPTLFNA 366 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+S Sbjct: 367 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGRS 426 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN+ Sbjct: 427 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNS 486 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV WTLFSP++ DLHDLYG+ FE AY YE + GE+K+F+++ Sbjct: 487 ANWIPDLFMKRVINEEDWTLFSPNDAPDLHDLYGEAFEKAYLEYEAKTRSGELKLFKRLP 546 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVCN Sbjct: 547 AINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVCN 606 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NL H N D +KL TI TAVR+LDNVIDIN +++ +A++SN HR +GLG+M Sbjct: 607 LGSVNLAQHVDENGLDIEKLQGTINTAVRMLDNVIDINYYSVPQAERSNMKHRPVGLGIM 666 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ I YAS +AV AD SME +S++AI AS +LA+ERGAY +F GSLW QGV Sbjct: 667 GFQDALYKQGISYASSDAVTFADNSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGVL 726 Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDSI +L R E ++R+ L WD ++ K GMRNSN MAIAPTATIANI GVS Sbjct: 727 PIDSIEILVNQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGVS 785 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 QSI+P+YQNLYVKSN+SG+FTVVN +LV+ LK+R LWD M++DLKY+DGS IERIP Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVSALKERGLWDNVMVNDLKYYDGSAQPIERIPA 845 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK+ TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD Y+ AWL+GLKT Sbjct: 846 DLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLKT 905 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVP--VTDPNSS-THSLGIPSSCT-SDTECEVCQ 954 TYYLR+ AT EKST+ DGKLN V V +P + + +P +C+ D +CE CQ Sbjct: 906 TYYLRAIGATQTEKSTIN--DGKLNRVSSKVEEPAAEFGQAADVPQACSLDDPDCEACQ 962 >gi|256822963|ref|YP_003146926.1| ribonucleoside-diphosphate reductase subunit alpha [Kangiella koreensis DSM 16069] gi|256796502|gb|ACV27158.1| ribonucleoside-diphosphate reductase, alpha subunit [Kangiella koreensis DSM 16069] Length = 957 Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/933 (60%), Positives = 718/933 (76%), Gaps = 15/933 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VI+RNG VT +D SKI A+ KAF+AVEG A+ S RV + ++ LT+Q + Sbjct: 33 IRVIRRNGKVTPYDDSKIEVAMTKAFLAVEGGAAAASSRVHETVRQLTKQITDAFKRRMP 92 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP-KLKI 147 I+HIED+QDQVE +LM++G K+ R YVLYREERS RAA+ +K DA + ++ + Sbjct: 93 GGGIIHIEDVQDQVELALMRNGEQKVARSYVLYREERSRERAARDTAKLDALVGDNQVMV 152 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ++DG+ + +RL +V EAC L DV +L +T +N+YDG++ D AL+ ++R Sbjct: 153 TVEDGSKRPLDVERLHTVVVEACKDLSDVEPDQILKDTMRNLYDGVAIKDAYQALVMTAR 212 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEKEPNY VTAR LL+ +R E L + ++AT EM +YPE F Y+ GV+ Sbjct: 213 TMIEKEPNYTYVTARLLLDSIRSEALREL-GVAKRATQSEMNAIYPEAFKAYLSVGVENE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL ++ FDL +AN +K ERD F YLG+Q L+DRYF+H + RIE+PQ F+MRVAMG Sbjct: 272 LLSPELLSFDLDKIANAIKPERDMLFTYLGIQTLFDRYFIHKDEVRIELPQVFWMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA+ E ++E RA+EFY++LS+FH+M STPTLFNSGT PQLSSC+LT VPDDL GI+GA+ Sbjct: 332 LAVNEDDREARAIEFYDVLSTFHYMSSTPTLFNSGTLRPQLSSCYLTNVPDDLDGIYGAI 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWTPVRGLGA+I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWHID+EEFL+LRKNTGDDRRRTHDMN+ANW+PDLF+KRV+ + WTLFSP+EV Sbjct: 452 VCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNSANWVPDLFLKRVSSDGDWTLFSPNEV 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDLYGKEFE YE YE A G+IK + I A LWRKML+MLFETGHPWITFKDPC Sbjct: 512 PDLHDLYGKEFEERYEYYEEMAKYGKIKTAKTIPANVLWRKMLSMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N+RSPQQHVGVVHSSNLCTEITLN+ + EE AVCNLGS+NL H + + D ++L T+ Sbjct: 572 NLRSPQQHVGVVHSSNLCTEITLNTKAGEEIAVCNLGSVNLPKHMKDGKLDTEQLEKTVS 631 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TAVR+LDNVIDIN + ++ A+KSN HR +GLGLMGFQ AL+L +IPY S AV+ AD + Sbjct: 632 TAVRMLDNVIDINFYPVDTARKSNMRHRPVGLGLMGFQDALYLQNIPYTSEAAVDFADNA 691 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744 ME IS++AI AS +LA+ERG+Y SF GSLW QG+ PIDSI L E R + ++ +S + Sbjct: 692 MEAISYYAIQASTDLAEERGSYESFAGSLWSQGILPIDSIEKLIEERGAEFIEVDTSSTM 751 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD L++RVKTIGMRNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKSN+SG+FTVVN Sbjct: 752 DWDTLRERVKTIGMRNSNVMAIAPTATISNISGVSQSIEPTYQNLYVKSNLSGEFTVVNP 811 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 ++V ELK R LWD M++DLKY++GS+ +I+RIP ++K++ ATAFE++P WL+E+ASRRQ Sbjct: 812 YMVKELKARKLWDSVMVNDLKYYEGSLQHIDRIPSEIKELFATAFEVEPKWLVEAASRRQ 871 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWIDQAQSLNLY+ EPSGKKLD +YR AW GLKTTYYLRS ATS EKST+ DGKLN Sbjct: 872 KWIDQAQSLNLYMSEPSGKKLDMVYRMAWFRGLKTTYYLRSLGATSTEKSTIS--DGKLN 929 Query: 925 AVPVTDPNSSTHSLG--IPSSCTSD-TECEVCQ 954 AV +S ++G P +C D +CE CQ Sbjct: 930 AV-----SSGPAAVGSAAPKACAIDEPDCEACQ 957 >gi|302525966|ref|ZP_07278308.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. AA4] gi|302434861|gb|EFL06677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. AA4] Length = 967 Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/911 (62%), Positives = 692/911 (75%), Gaps = 9/911 (0%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 PS A P V+VI+R+G V+ FD KIS A+ KAF+AVEG A+ S RV ++ L Sbjct: 31 PSAAEGAP---SAVRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVVAEL 87 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 TEQ LL+H +HIE IQDQVE +LM+ GHHK+ R YVLYR D RA + Sbjct: 88 TEQVEAALLRHTGPETALHIEQIQDQVELALMRGGHHKVARAYVLYR----DERAKAREA 143 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + A L + DGTL + R+ +V EA +GL+DVS++ VL+E +N+YDG++ Sbjct: 144 AAPAHAEVALSVKGADGTLRPLDWARVSHVVGEAVAGLEDVSAEPVLAEAKRNLYDGITA 203 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +L A I ++R L+E+EPNY+ V+AR LL+KLR E L+ + P++A+ EM Y Y Sbjct: 204 DELALAQIMAARVLVEQEPNYSFVSARLLLDKLRGEALSYLAGAPRQASQDEMTSEYAPY 263 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F Y+ V+ L+ + FDL + ++ ERD F +LGLQ LYDRYF H NG R E Sbjct: 264 FRAYLRRAVELELVDAELTTFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHNGVRFE 323 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQAFFMRVAMGLA++E +E RA+EFY LLS+FHFM STPTLFNSGT QLSSCFLTT Sbjct: 324 LPQAFFMRVAMGLAIREDNREARAIEFYELLSTFHFMASTPTLFNSGTNRAQLSSCFLTT 383 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V DDL IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+ANDTA Sbjct: 384 VDDDLDSIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTA 443 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV Sbjct: 444 VAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEA 503 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 NA WTLFSP+E DLHDLYG F Y YE A RGEIKVFRK+ AV LWR+MLTMLFE Sbjct: 504 NAEWTLFSPNETPDLHDLYGNAFAQRYREYEAAAARGEIKVFRKVRAVELWRRMLTMLFE 563 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NLL H Sbjct: 564 TGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTPEG 623 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D ++L T+RTAVR+LDNVIDIN +TI +A++SN HR +GLG+MGFQ AL L +P+A Sbjct: 624 LDTERLEKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFELGVPFA 683 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-- 733 S EAV+ AD SME +S++AISAS +LA+ERG Y +F+GSLW +G+ PIDS+ LL + R Sbjct: 684 SEEAVKFADVSMEHLSYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQG 743 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D L ++ ++ L W L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNLYVKS Sbjct: 744 DGLDVDTSTTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLYVKS 803 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NMSGDFTVVN LV LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI+ Sbjct: 804 NMSGDFTVVNPHLVKSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 863 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 W++++ S RQKWIDQAQSLNLY+ PSG+KLD +YR AW GLKTTYYLR++SAT VEK Sbjct: 864 KWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRAQSATHVEK 923 Query: 914 STLKGVDGKLN 924 STL+G DGKLN Sbjct: 924 STLRGTDGKLN 934 >gi|261855610|ref|YP_003262893.1| ribonucleotide-diphosphate reductase subunit alpha [Halothiobacillus neapolitanus c2] gi|261836079|gb|ACX95846.1| ribonucleoside-diphosphate reductase, alpha subunit [Halothiobacillus neapolitanus c2] Length = 957 Score = 1179 bits (3051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/928 (59%), Positives = 700/928 (75%), Gaps = 9/928 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VI+RNG VT+FD SKI A+ KAF+AVEG GA+ S+RV D++ L++Q + L + Sbjct: 37 LRVIRRNGKVTAFDDSKIKVAMTKAFLAVEGSGAAVSMRVHDLVNALSDQISSALKRRAP 96 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 VHIEDIQDQVE +LM+ GHHK+ R YVLYRE ++ RAA++ ++ I L + Sbjct: 97 GGGTVHIEDIQDQVELALMREGHHKVARAYVLYREHQAQKRAAEAPDQATPEIV--LNVT 154 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DGT + RL ++ EACS L DV VL ET +N++DG+ E ++ TAL+ S+RT Sbjct: 155 HADGTRSPLDHVRLNALIGEACSNLTDVDPNAVLQETLRNLFDGVPEKEVNTALVMSART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+PNY+ V AR LL+ +R E L + T E+ L+ +YF YI G++ L Sbjct: 215 LIEKDPNYSFVAARLLLDGIRSEALRFTKQPVTVCTQSELSGLFADYFQSYINTGIEHEL 274 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ +D+ L + + RD F YLGLQ LYDRYFLH G R E+PQAFFMRVAMGL Sbjct: 275 LDPTLRQYDIKRLTDAIDTSRDLQFSYLGLQTLYDRYFLHEGGVRFELPQAFFMRVAMGL 334 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A+ E ++E A+EFY LLSSF FM STPTLFNSGT PQLSSC+LTTVPDDL GIF A++ Sbjct: 335 AINEIDRETHAIEFYKLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFAAIK 394 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+K++GGLGNDW+ VR L +HI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 395 DNALLSKFAGGLGNDWSRVRALSSHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 454 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV + WTLFSP + Sbjct: 455 CAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVMEEGEWTLFSPADCP 514 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G FE AY YE + DRGE+K FR+I A LWRKML+MLFETGHPWITFKDPCN Sbjct: 515 DLHDLTGLAFEKAYTAYEARVDRGEMKNFRRIKATNLWRKMLSMLFETGHPWITFKDPCN 574 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +R QH GVVHSSNLCTEITL+++ +E AVCNLGS+NL H N D +KLA TI+TA Sbjct: 575 LRYTNQHAGVVHSSNLCTEITLHTNDQEIAVCNLGSVNLAQHVTENGLDQEKLARTIKTA 634 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVI+ N +++ +A+ SN HR +GLG+MGFQ ALH+ IPY+S +A+E AD SME Sbjct: 635 MRMLDNVIEYNYYSVPQARNSNLRHRPVGLGIMGFQDALHIQKIPYSSEQAIEFADRSME 694 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 +S++AISAS +LA ERG Y SF+GSLW +G+ PIDSI LLAE R + L MNR + L W+ Sbjct: 695 TVSYYAISASSDLAAERGRYQSFEGSLWSRGILPIDSIDLLAEARGKYLVMNRDTTLDWE 754 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 ++ ++K GMRNSN MAIAPTATI+NICGV+QSI+P+++NL+VKSN+SG+FTV+N +LV Sbjct: 755 AVRAKIKVQGMRNSNTMAIAPTATISNICGVAQSIEPTFENLFVKSNLSGEFTVINPYLV 814 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK DLWDE M++DLKY DGS+ I+RIPD LK ++ATAFE++P WLIE+ SRRQKWI Sbjct: 815 RDLKALDLWDEVMVNDLKYFDGSVQQIDRIPDSLKALYATAFEVEPRWLIEAGSRRQKWI 874 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLNLYL +PSG KLD +Y+ AWL+GLKTTYYLR+ S T VEK+T+ +DGKL V Sbjct: 875 DQAQSLNLYLADPSGPKLDQMYKNAWLVGLKTTYYLRASSKTRVEKTTMTKLDGKLRGVS 934 Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 DP + +P +C D CE CQ Sbjct: 935 A-DPIAE----ALPKACAIDDPGCEACQ 957 >gi|119504229|ref|ZP_01626309.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2080] gi|119459737|gb|EAW40832.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2080] Length = 964 Score = 1179 bits (3049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/930 (60%), Positives = 711/930 (76%), Gaps = 7/930 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG VTSF+ SKIS AI KAF+AVEG A+ S R+ + + LTEQ +T + Sbjct: 38 LRVIKRNGTVTSFEDSKISVAITKAFLAVEGGTAAASSRIHETVAKLTEQVITTFKRRMP 97 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH-SKSDAPIAPKLKI 147 S +HIEDIQDQVE +LM++G HKI R+YV+YREER+ RAA++ S A + + Sbjct: 98 SGGTIHIEDIQDQVELALMRAGEHKIARDYVIYREERARDRAAKAALSPESQAAASGINV 157 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +M DG+ N +R+ IV EAC+ L DVS ++ E +N+YDG++ ++ T+L+ ++R Sbjct: 158 VMPDGSREPLNIERVRTIVSEACADLVDVSESAIIDEALRNLYDGVTADEVSTSLVITAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IE++PNY+ V AR LL+ LR E L + + AT +M LY E +I +GV Sbjct: 218 TMIEQDPNYSYVAARLLLDNLRAESLNYL-GVAKSATQSDMAQLYSEALSAFIHQGVTLE 276 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL +++FD+ L L ERD F YLGLQ LYDRYF+H + RIE+PQ FFMRVAMG Sbjct: 277 LLSPELLEFDIAALGQALLPERDLQFSYLGLQTLYDRYFIHADEVRIELPQVFFMRVAMG 336 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+++E + RA+EFY LLSSF +M STPTLFNSGT QLSSC+LTTVPDDL+GI+GA+ Sbjct: 337 LSIREDDPNTRAIEFYQLLSSFDYMSSTPTLFNSGTLRSQLSSCYLTTVPDDLFGIYGAI 396 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQG++PFLKV NDTAVAVNQGGKRKGA Sbjct: 397 QDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGA 456 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSP++V Sbjct: 457 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGDWTLFSPNDV 516 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDLYG+ FE Y YE A GEI+V + + A A+WRKML M+FETGHPW+TFKDPC Sbjct: 517 PDLHDLYGRAFEDRYAQYEAMAASGEIRVHKTLKAQAVWRKMLGMIFETGHPWVTFKDPC 576 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGS+NL H + + + KL +T+RT Sbjct: 577 NLRSPQQHVGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIEDGKLNLKKLRATVRT 636 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN +++ +A++SN HR IGLG+MGFQ AL+ + + YAS AV AD+SM Sbjct: 637 AIRMLDNVIDINYYSVPQAEQSNMRHRPIGLGIMGFQDALYKIDVSYASKGAVSFADQSM 696 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745 E +S+ AI AS ELA ERGAYSS++GSLW QGVFP+DS+ +L E R + + +NR Sbjct: 697 EAVSYFAIEASSELAAERGAYSSYEGSLWSQGVFPLDSLDILVEQRGANYIEVNRDMTFD 756 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ELK RV GMRNSNCMAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN + Sbjct: 757 WPELKGRVAKHGMRNSNCMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 816 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD+ M++DLKY DGS+ +I+RIPDDLK ++TAFEI+P WL++SASRRQK Sbjct: 817 LVRDLKARDLWDKVMVNDLKYFDGSVQSIDRIPDDLKAKYSTAFEIEPRWLVDSASRRQK 876 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY++ SGKKLD YR AW GLKTTYYLRS +AT EKST++ GKLNA Sbjct: 877 WIDQAQSLNLYINNASGKKLDVTYRMAWYSGLKTTYYLRSLAATGTEKSTVES--GKLNA 934 Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 V S+ +P +C+ D +CE CQ Sbjct: 935 VASGAAESTPQPAPVPQACSLDDPDCEACQ 964 >gi|254492424|ref|ZP_05105596.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Methylophaga thiooxidans DMS010] gi|224462316|gb|EEF78593.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Methylophaga thiooxydans DMS010] Length = 976 Score = 1178 bits (3047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/890 (61%), Positives = 687/890 (77%), Gaps = 2/890 (0%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 G VI+RNG VT FD KI+ AI KAF+AVEG A S R+ D +K LT Q LL+ Sbjct: 18 GYSVIRRNGKVTDFDSGKIAVAITKAFLAVEGDSAQNSRRIHDTVKKLTGQITDNLLRRL 77 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 VHIEDIQDQVE +LM+ G +K+ R YV+YRE++S+ RA + L + Sbjct: 78 DDGGTVHIEDIQDQVELALMREGEYKVARSYVVYREKQSEKRAEEEKKHPQPANETTLHV 137 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + DGT + RL ++ EAC GL +V + +L +T +N++DG+ ESD+E AL+ +R Sbjct: 138 TLADGTRQPLDIDRLHNLITEACEGLAEVDREAILRDTQRNLFDGVKESDVEKALVMGAR 197 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T IEK+P Y+ + AR L++ +RRE L+ V+K P++A +EM +YP+YF YI ++ Sbjct: 198 TFIEKDPAYSTLAARLLMDGIRREALSFVFKMPKQAAQNEMVDIYPDYFKSYIHTAIEKE 257 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 L+ + FDL L LK E DF F YLGLQ LYDRYF+H +G+R E+PQAF+MRVAMG Sbjct: 258 LVDSELGLFDLDRLGKALKPELDFDFTYLGLQTLYDRYFIHYDGTRFELPQAFYMRVAMG 317 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA+ E +E+RA+EFYNLLSSF FM STPTLFNSGT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 318 LAINELNREERAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLSGIYNAM 377 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+KY+GGLGNDWT VRGLGAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 378 RDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 437 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWHID+EEFLD+RKNTGDDRRRTHDMNTANWIPD+FMKRV + WTLFSP+EV Sbjct: 438 VCAYLETWHIDIEEFLDMRKNTGDDRRRTHDMNTANWIPDMFMKRVAEEGQWTLFSPEEV 497 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G FE AY YE +A RGEI+ F+++ A LWRKML MLFETGHPW+TFKDPC Sbjct: 498 DDLHDLTGLAFEKAYTEYEEKAARGEIRNFKQLPATDLWRKMLGMLFETGHPWVTFKDPC 557 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIR 626 N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+N++ H N + D KL T+R Sbjct: 558 NLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNMVKHIDENGKLDTQKLQKTVR 617 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVI+ N +++ +A+ SN HR +GLG+MGFQ AL+ L +PY+S E V+ ADES Sbjct: 618 TAMRMLDNVIEYNYYSVPQARNSNLLHRPVGLGIMGFQDALYKLRLPYSSEETVKFADES 677 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745 ME +S++AI AS +LA ERG Y S++GSLW +G+ PIDSI LL E R E L + + + Sbjct: 678 MEAVSYYAIEASSDLAAERGKYQSYEGSLWSKGILPIDSIKLLQEARGEYLQQDDSQTMD 737 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ ++K GMRNSN MAIAPTATI+NICGVSQSI+P+YQN++VKSN+SG+FTV+N + Sbjct: 738 WDALRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNIFVKSNLSGEFTVINPY 797 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 +V +LK RDLWDE MI+DLKY DGS+ +I+RIPD+LK ++ TAFE+D WLIE+ASRRQK Sbjct: 798 MVEDLKARDLWDEVMINDLKYFDGSLQSIDRIPDELKALYTTAFEMDARWLIEAASRRQK 857 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 WIDQAQSLNLY+ EPSGKK+D +Y+ AW+ GLKTTYYLRS AT EK++ Sbjct: 858 WIDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGATGAEKTS 907 >gi|254516738|ref|ZP_05128797.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma proteobacterium NOR5-3] gi|219675161|gb|EED31528.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma proteobacterium NOR5-3] Length = 967 Score = 1177 bits (3046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/930 (60%), Positives = 700/930 (75%), Gaps = 10/930 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V F+ SKIS AI KAF+AVEG A+ S R+ + + LTE + Sbjct: 44 LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAAASSRIHETVAKLTEMVTATFKRRMP 103 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-QSHSKSDAPIAPKLKI 147 S +HIED+QDQVE SLM++G HKI R+YV+YRE+++ RAA QS S A ++ + Sbjct: 104 SGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREQQAVKRAARQSLSAETQQAADRINV 163 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + DG+ + +RL +IV EAC+GL+DVS +L E +N+YDG+S +L T+L+ ++R Sbjct: 164 VQLDGSKAPLDLERLHIIVSEACAGLEDVSESRILDEALRNLYDGVSMQELSTSLVITAR 223 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TLIE+EPNY +AR L + LR E LT + + AT +M YP+ YI+ GV+ Sbjct: 224 TLIEQEPNYTYASARLLCDNLRTEALTFL-GVAESATQGDMDRYYPQALSAYIKRGVELE 282 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL ++ D+DL L + ERD F YLGLQ LYDRYF+H + RIE+PQ FFMRVAMG Sbjct: 283 LLDPTLADYDLEQLGAAILPERDLQFTYLGLQTLYDRYFIHSDEVRIELPQIFFMRVAMG 342 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA++E +E RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL+GI+GA+ Sbjct: 343 LAVEEEHREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAI 402 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 403 QDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 462 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP++V Sbjct: 463 VCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFSPNDV 522 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDLYGK FE Y YE A GEIK + + A LWRKML MLFETGHPW+TFKDPC Sbjct: 523 PDLHDLYGKAFEERYNTYEAMAANGEIKNHKTVKAQNLWRKMLGMLFETGHPWMTFKDPC 582 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL H N + +KL T+RT Sbjct: 583 NLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHIDENGLNLEKLEQTVRT 642 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN ++++ A+ SN HR +GLGLMGFQ AL+ HI Y S AVE AD SM Sbjct: 643 AVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQHIAYGSDAAVEFADRSM 702 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745 E IS++AI AS LA ERGAYSS++GSLW QG+ PIDS+ L + R D + ++ T+ L Sbjct: 703 EAISYYAIDASSSLAAERGAYSSYEGSLWSQGILPIDSLSKLVDERGSDYIKVDSTTTLD 762 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L+ VK GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN + Sbjct: 763 WESLRTSVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 822 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LVN+LK R LWD M++DLKY+DGS+ +IERIP DL+ I++ AFE++P W++E ASRRQK Sbjct: 823 LVNDLKARGLWDSVMVNDLKYYDGSVQSIERIPADLRAIYSNAFEVEPKWIVECASRRQK 882 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY++ SGKKLD YR AW GLKTTYYLRS +AT EKST+ G+LNA Sbjct: 883 WIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKSTI--ATGQLNA 940 Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 V ++ +P +C+ D +CE CQ Sbjct: 941 V---SSSAEPQPAPVPQACSLDDPDCEACQ 967 >gi|329893651|ref|ZP_08269785.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC3088] gi|328923578|gb|EGG30890.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC3088] Length = 922 Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/928 (60%), Positives = 700/928 (75%), Gaps = 10/928 (1%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKRNG V FD SKIS AI KAF+AVEG A+ S R+ + + LT Q + + S Sbjct: 1 MIKRNGQVVPFDNSKISVAITKAFLAVEGGTAAASSRIHETVAKLTTQVMGTFERRMPSG 60 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149 +HIEDIQDQVE +LM++G HKI R+YV+YREE++ RA + ++A A + ++ Sbjct: 61 GTIHIEDIQDQVELALMRAGEHKIARDYVIYREEQARKRAQKRALSAEAERAAGAISVLQ 120 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG+ + +RL+ +V EAC+ L DVS+ +L E +N+YDG++ ++ T+L+ ++RTL Sbjct: 121 PDGSRAPLDIERLQTVVSEACADLADVSASKILEEALRNLYDGVTLDEVTTSLVITARTL 180 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE+EPNY AR L + LR E L + Q+AT EM YP+ YI +G++ LL Sbjct: 181 IEQEPNYTYAAARLLCDDLRSEALEFL-GVTQRATQQEMALYYPQALQAYIAKGIQLELL 239 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + DFD+ L ++ ERD F YLGLQ LYDRYF+H N +R E+PQ FFMR+AMGLA Sbjct: 240 SPELADFDIARLGAAIQPERDLQFTYLGLQTLYDRYFIHSNETRFELPQVFFMRIAMGLA 299 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 ++E +K RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+GA+++ Sbjct: 300 VREDDKNARAIEFYQLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIRD 359 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC Sbjct: 360 NALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 419 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWH+D+EEFL+LRKNTGDDRRRTHDMN+ANWIPDLFMKRV + WTLFSP++ D Sbjct: 420 AYLETWHLDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVFEGGEWTLFSPNDTPD 479 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHD YG +FE YE YE Q GE+K+F+++ A LWRKML MLFETGHPWITFKDPCN+ Sbjct: 480 LHDSYGADFEAKYEAYEAQTRSGELKLFKRVKAENLWRKMLGMLFETGHPWITFKDPCNL 539 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 RSPQ HVGVVHSSNLCTEITLN+S EE AVCNLGS+NL H N + +KL T+ TAV Sbjct: 540 RSPQSHVGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLPQHIDENGLNLEKLQKTVTTAV 599 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVIDIN +++ +A++SN HR +GLGLMGFQ AL+ HI Y+SPEAVE AD SME Sbjct: 600 RMLDNVIDINYYSVPQAERSNFRHRPVGLGLMGFQDALYKQHIAYSSPEAVEFADRSMEA 659 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWD 747 IS++AI AS LA+ERG YSSF+GSLW QG+ PIDS+ LAE R + L ++RT L WD Sbjct: 660 ISYYAIQASSALAEERGTYSSFEGSLWSQGILPIDSLERLAESRGDQYLQIDRTQTLDWD 719 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L++RV+ GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 720 TLRERVRAKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 779 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+LK R+LWD+ M++DLKY+DGS I+RIP DLK I++TAFE++P W++E+ASRRQKWI Sbjct: 780 NDLKARNLWDKVMVNDLKYYDGSAQAIDRIPADLKAIYSTAFEVEPRWIVEAASRRQKWI 839 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLNLY++ SGKKLD YR AWL GLKTTYYLRS +AT EKST+ G LNAV Sbjct: 840 DQAQSLNLYINNASGKKLDVTYRMAWLSGLKTTYYLRSLAATGTEKSTVD--KGTLNAVA 897 Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 +C+ D +CE CQ Sbjct: 898 AAAAPQPAPVP---KACSLDDPDCEACQ 922 >gi|313497536|gb|ADR58902.1| NrdA [Pseudomonas putida BIRD-1] Length = 959 Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/948 (58%), Positives = 709/948 (74%), Gaps = 13/948 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ P LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSNPDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA + Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +++ + P ++I + DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + ATHHEM LY Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ + A LWRKML+M Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E Sbjct: 675 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954 EKST+ GKLNAV ++ + G +P +C D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|119713587|gb|ABL97638.1| ribonucleotide-diphosphate reductase alpha subunit [uncultured marine bacterium EB0_39H12] Length = 955 Score = 1172 bits (3031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/943 (58%), Positives = 716/943 (75%), Gaps = 18/943 (1%) Query: 21 PFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79 P P G ++VIKRNG V S+D KI+ AI KAF+AVEG A+ S R+ + + L Sbjct: 22 PKPAIAPGQMRVIKRNGSVVSYDAEKIAIAITKAFLAVEGGAAAASTRIHNEVNQLANSV 81 Query: 80 VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139 T + S +HIE+IQDQVE LM+SG K+ R YVLYREER +R + K Sbjct: 82 TTTFTRRMPSGGTLHIEEIQDQVELELMRSGEQKVARTYVLYREERKQLRQKEEPQKE-- 139 Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 +++ +++G + + K LE++V EAC GL+ +++ ++ E KN+YDG++E D Sbjct: 140 -EKEGIRVTLENGDEDTQDIKHLEIMVTEACEGLEGTNAQQIIDEANKNLYDGVTEEDAR 198 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 T+L+ +SRTL+E+EPNY VTAR LL+ +R E LT + + Q AT EM+ LYP+ + Sbjct: 199 TSLVMTSRTLVEQEPNYTYVTARILLDNIRTEALTYLELQKQ-ATQQEMKVLYPQALRSF 257 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 + +GV+ +L+ +++ D+ L + RD F YLGLQ LYDRYF+H R E+PQ Sbjct: 258 LAKGVENEILNPELLEMDIEKLGKAIDSSRDMDFTYLGLQTLYDRYFIHDTEIRYELPQV 317 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FFMRV+MGLAL+E ++E++A+EFYNLLSSF +M STPTLFNSGT+H QLSSC+LTTVPDD Sbjct: 318 FFMRVSMGLALREEKREEKAIEFYNLLSSFDYMSSTPTLFNSGTKHSQLSSCYLTTVPDD 377 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L+GI+GA+Q+NAML+K++GGLGNDWTPVRGLG+ I GTNGKSQGV+PFLKV NDTAVAVN Sbjct: 378 LHGIYGAIQDNAMLSKWAGGLGNDWTPVRGLGSQIKGTNGKSQGVVPFLKVVNDTAVAVN 437 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLF+KRV+++ W Sbjct: 438 QGGKRKGAVCSYLETWHVDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFLKRVSEDKKW 497 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLF+P + DLHDLYG EFE YE YE Q GEI+ F+++ A LW+KML+M+FETGHP Sbjct: 498 TLFTPSDTPDLHDLYGLEFEKRYEEYETQTKTGEIEFFKEVEAKDLWKKMLSMVFETGHP 557 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 WITFKD CN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGS+NL H + + D + Sbjct: 558 WITFKDVCNLRSPQQHTGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLTHHIKDGKMDEE 617 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL TI TA+R+LDNVIDIN + ++ A+ SN HR IGLG+MGF AL++L PYAS EA Sbjct: 618 KLEKTINTAIRMLDNVIDINFYAVKAAETSNMKHRPIGLGIMGFHDALYMLETPYASQEA 677 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LA 737 V+ AD+SME +S++AI AS +LA+ERGAY S++GSLW QG+ PIDSI LL E R E L Sbjct: 678 VDFADKSMEMVSYYAIKASSDLAKERGAYQSYEGSLWSQGILPIDSIKLLKESRGEDYLE 737 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 M+ +S + WD L++ V+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG Sbjct: 738 MDESSSMDWDGLREIVRNQGIRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG 797 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FTV N +V LK+ LWD MI+DLKY+DGS+ I RIP+++K+++ATAF+I+P WLI Sbjct: 798 EFTVTNIPMVENLKRLGLWDSVMINDLKYYDGSVKGISRIPEEVKELYATAFDIEPRWLI 857 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 ++ASRRQKWIDQ+QSLNLY+DEP+GKKLD +YR AWL GLKTTYYLRSRSAT+ EKST+ Sbjct: 858 DAASRRQKWIDQSQSLNLYIDEPNGKKLDIMYRMAWLRGLKTTYYLRSRSATTAEKSTIS 917 Query: 918 GVDGKLNAV-----PVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 G+LNAV P P ++T + PS+C+ D +C+ CQ Sbjct: 918 --TGELNAVSATAQPEVQPQNNTTA---PSACSILDPDCDACQ 955 >gi|26987914|ref|NP_743339.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida KT2440] gi|24982623|gb|AAN66803.1|AE016309_5 ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440] Length = 959 Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/948 (58%), Positives = 708/948 (74%), Gaps = 13/948 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA + Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +++ + P ++I + DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + ATHHEM LY Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ + A LWRKML+M Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E Sbjct: 675 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954 EKST+ GKLNAV ++ + G +P +C D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|148546453|ref|YP_001266555.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida F1] gi|148510511|gb|ABQ77371.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas putida F1] Length = 959 Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/948 (58%), Positives = 708/948 (74%), Gaps = 13/948 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA + Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +++ + P ++I + DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + ATHHEM LY Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A LWRKML+M Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E Sbjct: 675 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954 EKST+ GKLNAV ++ + G +P +C D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|325272775|ref|ZP_08139119.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp. TJI-51] gi|324102082|gb|EGB99584.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp. TJI-51] Length = 959 Score = 1166 bits (3017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/948 (58%), Positives = 707/948 (74%), Gaps = 13/948 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSQQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA + Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 ++S + P ++I + DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 ANSDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + ATHHEM LY Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAESATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+E+GV+ LL ++ +DL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYVEKGVEFELLDPALKGYDLERLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGV 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A LWRKML+M Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIN 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E Sbjct: 675 PYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + + +N L W +++RVK G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGQKYIDVNLEESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954 EKST+ GKLNAV ++ + G +P +C D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|254239526|ref|ZP_04932848.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192] gi|126192904|gb|EAZ56967.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192] Length = 963 Score = 1166 bits (3017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/952 (58%), Positives = 703/952 (73%), Gaps = 17/952 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE R+ R Sbjct: 76 RRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREARAAERKNA 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + A P ++I DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 GAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + ATHHEM LY Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMAELY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + YIE+G + L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGI 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLA++E ++E R +EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQIFFMRVAMGLAIEEKDREARTIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHDLYGK FE YE YE A G++K+ + + A LWRKML+M Sbjct: 495 VFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S A+ AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PIDS L E Sbjct: 675 PYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEE 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++ + L W L++RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DLK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPV-------TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 EKST+ GKLNAV P + +P +C+ D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSAGGNDGLQATPAAEPKPAPVPQACSIDNPDCEACQ 963 >gi|104780528|ref|YP_607026.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas entomophila L48] gi|95109515|emb|CAK14216.1| ribonucleoside diphosphate reductase, alpha subunit [Pseudomonas entomophila L48] Length = 958 Score = 1166 bits (3016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/932 (59%), Positives = 703/932 (75%), Gaps = 10/932 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 31 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 90 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA ++++ + P ++I Sbjct: 91 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATRANTDAVVEPHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+L + RL I+ EAC GL +V +++ ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSLAPLDMARLNTIISEACEGLAEVDGELIQRETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+E+GV+ L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLYAKALPAYVEKGVEFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ +DL + + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LDPALKGYDLERMGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 ALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL GK FE YE YE + +IKVF+ I A LWRKML+MLFETGHPW+TFKDPCN Sbjct: 510 DLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCN 569 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D KL T+ TA Sbjct: 570 LRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTA 629 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HIPY S AVE AD+SME Sbjct: 630 VRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSME 689 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R + + ++ T L W Sbjct: 690 AVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLTESLDW 749 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +++RVK G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +L Sbjct: 750 APVRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYL 808 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK R LWD MI+DLKY+DGS+ IERIP +LK ++ATAFE++ W++++ASRRQKW Sbjct: 809 VRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKW 868 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV Sbjct: 869 IDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNAV 926 Query: 927 PVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954 ++ + G +P +C D +CE CQ Sbjct: 927 SSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 958 >gi|331006662|ref|ZP_08329943.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC1989] gi|330419530|gb|EGG93915.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC1989] Length = 963 Score = 1165 bits (3013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/932 (59%), Positives = 705/932 (75%), Gaps = 9/932 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ A+ KAF+AVEG A+ S RV + +K T+Q + Sbjct: 35 LRVIKRNGTVMPYAEDKIAIAVTKAFLAVEGGTAAASSRVHETVKLFTQQISDTFNRRMP 94 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA--PKLK 146 S VHIEDIQDQVE +LM++G HK+ R+YVLYR ER+ VRA+ + + S ++ PKL Sbjct: 95 SGGTVHIEDIQDQVELTLMRNGEHKVARDYVLYRAERARVRASATPAVSAEALSKYPKLN 154 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + +++G + R+ IV EAC GL DVS +L E +N+YDG++ SD+ T+L+ ++ Sbjct: 155 VTLENGDTAPLDMARIHTIVTEACEGLSDVSVDAILDEAMRNLYDGVALSDINTSLVITA 214 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTL+EKEPNY+ TAR L +KLR E L + ++ATHHEM Y + YIE+G++ Sbjct: 215 RTLVEKEPNYSYATARLLQDKLRAEALGFL-GIAEQATHHEMAHYYAQALPAYIEKGIEL 273 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL S+ +FD+ L L + RD F YLGLQ LYDRYF+H N RIE+PQ FFMRVAM Sbjct: 274 ELLAPSLRNFDIPALGKALDHTRDSQFTYLGLQTLYDRYFIHSNDVRIELPQIFFMRVAM 333 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLA++E + +RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL+GI+GA Sbjct: 334 GLAVEEDKPTERAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGA 393 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKG Sbjct: 394 MQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKG 453 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A+CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV WTLF+P E Sbjct: 454 AMCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDKKEWTLFTPSE 513 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDL G FE YE YER ADRGEIK F++I A +LWRKML MLFETGHPWITFKD Sbjct: 514 APDLHDLCGTAFETRYEEYERMADRGEIKHFKRIPAESLWRKMLGMLFETGHPWITFKDS 573 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTI 625 CN+RSPQQHVGV+HSSNLCTEITLN+S+ +E AVCNLGS+NL H N + + KL +T+ Sbjct: 574 CNLRSPQQHVGVIHSSNLCTEITLNTSAGDEIAVCNLGSVNLAQHIENGELNTTKLEATV 633 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TAVR+LDNVIDIN + +E A+ SN HR IGLGLMGFQ AL+ Y+S +AVE AD Sbjct: 634 NTAVRMLDNVIDINYYAVEAARTSNMRHRPIGLGLMGFQDALYKQGFAYSSDQAVEFADR 693 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743 SME IS+ AI+AS LA ERG Y +F+GSLW +G PIDSI L + R E + M+R+ Sbjct: 694 SMEAISYFAINASSNLAAERGQYPTFEGSLWSKGELPIDSIETLVKQRGEKYIEMDRSQT 753 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L W L+ +V+ GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN Sbjct: 754 LDWSSLRSKVQKQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVN 813 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L+++LK+RDLWD M++DLKY++GS+ +ERIP DLK ++ATAFE++P W++ +ASRR Sbjct: 814 PYLIHDLKKRDLWDAVMVNDLKYYEGSVQKVERIPADLKALYATAFEVEPRWIVSAASRR 873 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKW+DQAQSLNLY+ +GKKLD YR AW GLKTTYYLR+ SAT+ EKST+ G G L Sbjct: 874 QKWLDQAQSLNLYIAGANGKKLDVTYRMAWYSGLKTTYYLRALSATTTEKSTVSG--GTL 931 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 NAV +++ + +P +C+ D +CE CQ Sbjct: 932 NAVSSNAESAAPVAAAVPKACSIDEPDCEACQ 963 >gi|313200885|ref|YP_004039543.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus sp. MP688] gi|312440201|gb|ADQ84307.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus sp. MP688] Length = 937 Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/938 (60%), Positives = 706/938 (75%), Gaps = 24/938 (2%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 + +QVI+R+G F KIS A+ KAF+AV G+ ++ S ++ ++ LT+ V L++ Sbjct: 15 LPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISTHMRTEVQALTDTVVAALVR 74 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 + +HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAAQ P L Sbjct: 75 RKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREKRAAERAAQQAPA------PTL 128 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ D G + + + L +V EAC L D V +++ + +++YDG+ ++ ALI Sbjct: 129 HVLQD-GKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAMRDLYDGMPFDEVRRALIL 187 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S+R+LIE+EP Y VTAR L+ +R EVL + +H M Y EYF +YI+ G+ Sbjct: 188 SARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKAGI 241 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 A LL E + FDL LA+ L +RD F YLGLQ LYDRYFLHI RIE+PQ FFMRV Sbjct: 242 AAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFMRV 301 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL GI+ Sbjct: 302 AMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDGIY 361 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGGKR Sbjct: 362 QAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKR 421 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV NA WTLFSP Sbjct: 422 KGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLFSP 481 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWITFK Sbjct: 482 SDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWITFK 541 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDK 620 DPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D K Sbjct: 542 DPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQTK 601 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 LA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS AV Sbjct: 602 LAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASAAAV 661 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739 E AD +ME + ++A AS LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R ++ ++ Sbjct: 662 EFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVEVD 721 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 R+ L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+F Sbjct: 722 RSRTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEF 781 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 TVVN LV +LK R LWDE MI+D+KY+DGS+ IER+P DLK+++ATAFE+DP+WL+E+ Sbjct: 782 TVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLVEA 841 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+RRQKWIDQAQSLNLY PSGKKL+ +Y AWL GLKTTYYLRS ATS EKST +G Sbjct: 842 AARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKSTGQG- 900 Query: 920 DGKLNAVPVTDP--NSSTHSLGIPSSC-TSDTECEVCQ 954 G+LNAV P ++T++ P C D +CE CQ Sbjct: 901 -GELNAVSSALPAVAAATNAEPEPKQCLIDDPDCEACQ 937 >gi|52842001|ref|YP_095800.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296107365|ref|YP_003619065.1| ribonucleoside-diphosphate reductase alpha chain [Legionella pneumophila 2300/99 Alcoy] gi|52629112|gb|AAU27853.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295649266|gb|ADG25113.1| ribonucleoside-diphosphate reductase alpha chain [Legionella pneumophila 2300/99 Alcoy] gi|307610474|emb|CBX00046.1| hypothetical protein LPW_18011 [Legionella pneumophila 130b] Length = 942 Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/928 (60%), Positives = 698/928 (75%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 27 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K + L I Sbjct: 87 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K + AT EM +YP YF YIE+G+ + Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + ISAV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH N + D KL TI TA Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L +R+ +L W+ Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 805 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 864 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922 Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 + D P +C+ +D +CE CQ Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942 >gi|254483512|ref|ZP_05096739.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [marine gamma proteobacterium HTCC2148] gi|214036233|gb|EEB76913.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [marine gamma proteobacterium HTCC2148] Length = 958 Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/930 (59%), Positives = 697/930 (74%), Gaps = 11/930 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V F+ SKIS AI KAF+AVEG A+ S R+ + + LT+Q + Sbjct: 36 LRVIKRNGTVVPFEESKISVAITKAFLAVEGGTAAASSRIHETVAKLTDQVAATFQRRMP 95 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ-SHSKSDAPIAPKLKI 147 S +HIED+QDQVE SLM++G HKI R+YV+YREE+S RAA+ S S+ A + + Sbjct: 96 SGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREEQSRKRAAKASLSQETQDAANGINV 155 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + DG+ ++ + RL +V EAC L+DV +L E KN+YDG++ +L T+L+ ++R Sbjct: 156 IQPDGSRVALDLDRLHTVVSEACFELEDVVESAILDEALKNLYDGVTAEELATSLVITAR 215 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IE++PNY+ V AR L + LR E L+ + AT +M LY + YI G++ Sbjct: 216 TMIEQDPNYSYVAARLLCDNLRAEALSFL-GVATNATQADMGQLYAKALPAYIARGIELE 274 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL ++ +DL L L ERD F YLGLQ LYDRYF+H + +R E+PQ FFMRVAMG Sbjct: 275 LLSPNLAGYDLQRLGEALLPERDLQFTYLGLQTLYDRYFIHSDETRFELPQVFFMRVAMG 334 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA +E + RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL+GI+GA+ Sbjct: 335 LAAEEANRNDRAIEFYELLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAI 394 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQG++PFLKV NDTAVAVNQGGKRKGA Sbjct: 395 QDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGA 454 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+DVEEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV WTLFSP +V Sbjct: 455 VCAYLETWHMDVEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFNGEDWTLFSPSDV 514 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDLYG FE Y +YE A GEIK+F+ + A LWRKML MLFETGHPW+TFKDPC Sbjct: 515 PDLHDLYGVAFEQRYAHYEAMAAAGEIKLFKTVKAENLWRKMLGMLFETGHPWMTFKDPC 574 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS+NL H N + +KL +T+RT Sbjct: 575 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPQHIDENGLNLEKLRNTVRT 634 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLGLMGFQ AL+ H+ Y S +AV AD SM Sbjct: 635 AVRMLDNVIDINYYSVPQAKNSNLMHRPVGLGLMGFQDALYKQHLAYGSEQAVSFADHSM 694 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745 E IS++AI AS ELA ERGAYSS++GSLW QGVFPIDS+ L + R D + +++T + Sbjct: 695 EAISYYAIEASSELAAERGAYSSYEGSLWSQGVFPIDSLQRLIDERGADYIQVDQTESMD 754 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L+ +V+ GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN + Sbjct: 755 WQALRSQVQQNGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 814 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK+R LWD M++DLKY+DGS+ I+RIP D+K I++TAFE++P WL+++ASRRQK Sbjct: 815 LVRDLKERGLWDGVMVNDLKYYDGSVQAIDRIPADIKGIYSTAFEVEPRWLVDAASRRQK 874 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY++ +GKKLD YR AW GLKTTYYLRS +AT EKST+ G LNA Sbjct: 875 WIDQAQSLNLYINNANGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKSTID--TGTLNA 932 Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 V N + +P +C+ D +CE CQ Sbjct: 933 V----SNEAAGPAPVPQACSLDDPDCEACQ 958 >gi|88705572|ref|ZP_01103282.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter litoralis KT71] gi|88700085|gb|EAQ97194.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter litoralis KT71] Length = 969 Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/930 (60%), Positives = 699/930 (75%), Gaps = 10/930 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V F+ SKIS AI KAF+AVEG A+ S R+ + + LTE + Sbjct: 46 LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAAASSRIHETVAKLTEMVTATFKRRMP 105 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-QSHSKSDAPIAPKLKI 147 S +HIED+QDQVE SLM++G HKI R+YV+YRE+++ RAA QS S A ++ + Sbjct: 106 SGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREQQASKRAARQSLSAETQEAADRINV 165 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + DG+ + +RL +IV EAC+GL DVS +L E +N+YDG+S +L T+L+ ++R Sbjct: 166 VQLDGSKAPLDLERLHIIVSEACAGLDDVSETRILDEALRNLYDGVSMQELSTSLVITAR 225 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TLIE+EPNY +AR L + LR E L+ + AT +M LY + YI GV+ Sbjct: 226 TLIEQEPNYTYASARLLCDNLRTEALSFL-GVADSATQGDMDRLYAKALPAYIARGVELE 284 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL ++ ++DL + + ERD F YLGLQ LYDRYF+H + R E+PQ FFMRVAMG Sbjct: 285 LLDPTLAEYDLERMGKAILPERDLQFTYLGLQTLYDRYFIHSDEVRFELPQIFFMRVAMG 344 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA++ET++E RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL+GI+GA+ Sbjct: 345 LAVEETDREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAI 404 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 405 QDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 464 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP++V Sbjct: 465 VCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFSPNDV 524 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDLYGK FE Y YE A GE+K + + A LWRKML MLFETGHPW+TFKDPC Sbjct: 525 PDLHDLYGKAFEERYCAYEAMAATGELKYSKTVKAQNLWRKMLGMLFETGHPWMTFKDPC 584 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL H N + +KLA T+RT Sbjct: 585 NLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHVDENGLNLEKLAETVRT 644 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN ++++ A+ SN HR +GLGLMGFQ AL+ HI Y S +AV AD SM Sbjct: 645 AVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQHIAYGSEDAVTFADRSM 704 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745 E IS++AI AS +LA+ERGAY S++GSLW QG+ PIDS+G L E R D + ++ + + Sbjct: 705 EAISYYAIDASSKLAEERGAYESYEGSLWSQGILPIDSLGKLVEERGSDYIKVDDSMTMD 764 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L++ VK GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN + Sbjct: 765 WTSLREAVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 824 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LVN+LK R LWD M++DLKY+DGS+ IERIP DL+ I++ AFE++P W++E ASRRQK Sbjct: 825 LVNDLKVRGLWDSVMVNDLKYYDGSVQAIERIPADLRAIYSNAFEVEPRWIVECASRRQK 884 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY++ SGKKLD YR AW GLKTTYYLRS +AT EKST+ G+LNA Sbjct: 885 WIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKSTID--TGQLNA 942 Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 V S+ +P +C+ D +CE CQ Sbjct: 943 V---SSESAPAPAPVPMACSLDDPDCEACQ 969 >gi|224825452|ref|ZP_03698557.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella nitroferrum 2002] gi|224602373|gb|EEG08551.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella nitroferrum 2002] Length = 949 Score = 1162 bits (3005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/934 (59%), Positives = 698/934 (74%), Gaps = 21/934 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 + I+RNG V F+P KIS A+ KAF+A+ G + S ++D + LTE V+ L++ Sbjct: 28 KTIRRNGAVVPFEPVKISIAMTKAFLAIMGHQGATSASIRDKVAQLTEMVVSALMRRKPE 87 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 +HIEDIQDQVE SLM++G H + R YVLYREERS RAA+ + + I ++ Sbjct: 88 GGAIHIEDIQDQVELSLMRAGEHDVARAYVLYREERSRERAARGEALTQITI----NVVR 143 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 +G + + +L +E AC GL + +L+ET KN+YDG+SE ++ + I ++R + Sbjct: 144 KNGAKLPLDIAKLRATIESACVGLAETDVDAILTETLKNIYDGVSEEEVNKSAILAARAM 203 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE++P Y VTAR LL +R E+L + + EM Y YF + I++G+ A LL Sbjct: 204 IEQDPAYDYVTARLLLNNIRLEILG------EAVSQEEMGECYVSYFPQAIKKGIAAELL 257 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 E + ++DL L L RD F YLGLQ LYDRYFLH+NG+RIEMPQAF+MRVAMGLA Sbjct: 258 DERLGEYDLKKLGAALDASRDLQFGYLGLQTLYDRYFLHVNGTRIEMPQAFYMRVAMGLA 317 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L E E+E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTT+ DDL GI+ ++E Sbjct: 318 LNEVEREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTIADDLDGIYEGIKE 377 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC Sbjct: 378 NALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 437 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV A WTL SP E D Sbjct: 438 AYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLSPSECPD 497 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHDL G FE Y+ YE A RGEIKV ++I A++LWRKMLTMLFETGHPWITFKDPCNI Sbjct: 498 LHDLVGAAFEKRYQEYEAMAARGEIKVSKRIPALSLWRKMLTMLFETGHPWITFKDPCNI 557 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTA 628 RSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL H A+ D KL TIR A Sbjct: 558 RSPQGHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLARHMQADGTLDGAKLQRTIRIA 617 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ LH+ IPYAS EAVE ADESME Sbjct: 618 MRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHMKRIPYASQEAVEFADESME 677 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 +++HA AS ELAQERG Y S+KGSLWD+GV P DSI LLA R L ++RT RL W+ Sbjct: 678 LVAYHAYWASSELAQERGRYPSYKGSLWDRGVLPHDSINLLAAERGGYLDVDRTERLDWN 737 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L++R+K GMRNSNC+AIAPTATIANI GVS SI+P+YQNL+VKSN+SG+FTV N LV Sbjct: 738 KLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFTVTNEHLV 797 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK+ LWDE M+SDLKY DGS+G I+RIP +LK I+ATAFE+DP WL+++ASRRQKWI Sbjct: 798 RDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLVDAASRRQKWI 857 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLNLY+ SGKKLD +Y+ AW+ GLKTTYYLR+ +ATS EKST +G G+LNAV Sbjct: 858 DQAQSLNLYMAGASGKKLDELYKYAWVRGLKTTYYLRTLAATSAEKSTGRG--GELNAVS 915 Query: 928 VTDP--NSSTHSLGIPSS----CTSDT-ECEVCQ 954 T P +++ P++ C+ D +CE CQ Sbjct: 916 ATTPAVSAAPEVDNTPATDAKFCSIDNPDCEACQ 949 >gi|167035229|ref|YP_001670460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida GB-1] gi|166861717|gb|ABZ00125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas putida GB-1] Length = 959 Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/948 (58%), Positives = 706/948 (74%), Gaps = 13/948 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA + Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +++ + P ++I + DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + ATHHEM LY Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A LWRKML+M Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E Sbjct: 675 AYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954 EKST+ GKLNAV ++ + G +P +C D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|148359318|ref|YP_001250525.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella pneumophila str. Corby] gi|148281091|gb|ABQ55179.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella pneumophila str. Corby] Length = 917 Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/928 (60%), Positives = 698/928 (75%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 2 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 61 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K + L I Sbjct: 62 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 120 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 121 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 180 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K + AT EM +YP YF YIE+G+ + Sbjct: 181 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 239 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 240 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 299 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 300 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 359 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 360 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 419 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 420 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 479 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + ISAV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 480 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 539 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH N + D KL TI TA Sbjct: 540 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 599 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 600 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 659 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L +R+ +L W+ Sbjct: 660 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 719 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 720 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 779 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 780 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 839 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 840 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 897 Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 + D P +C+ +D +CE CQ Sbjct: 898 LIDTE--------PKACSITDPDCEACQ 917 >gi|90022103|ref|YP_527930.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharophagus degradans 2-40] gi|89951703|gb|ABD81718.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Saccharophagus degradans 2-40] Length = 969 Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/938 (59%), Positives = 713/938 (76%), Gaps = 15/938 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KIS A+ KAF+AVEG A+ S R+ + ++ LT Q + Sbjct: 35 LRVIKRNGTVVPYTDDKISVAMTKAFLAVEGGTAAASRRIHETVEGLTAQISATFKRRMP 94 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKI 147 S +HIE+IQDQVE +LM++G HK+ R+YV+YR +R++ R A + + P++ + Sbjct: 95 SGGTIHIEEIQDQVELTLMRAGEHKVARDYVIYRAKRAEQRTPAVNVEDVNFSDFPEINV 154 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + +G + R++ +V EAC+GL+DV + +L E +++YDG+S +DL TAL+ S+R Sbjct: 155 VDHNGDRHPLDIDRIKTVVAEACAGLKDVDADAILKEAMRSLYDGVSLTDLNTALVISAR 214 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TL+EKEPNY T+R L++KLR E L+ + ++AT EM+ LY + YIE+G++ Sbjct: 215 TLVEKEPNYTYATSRLLMDKLRAEALSFL-GIAEEATQAEMETLYAKTLPAYIEKGIELD 273 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 L+ + +DL L N L ERD F YLGLQ LYDRYFLH N RIE+PQ FFMRVAMG Sbjct: 274 LISPDLASYDLNMLGNALIAERDLQFTYLGLQTLYDRYFLHSNDVRIELPQIFFMRVAMG 333 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA E K +RAVEFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL+GI+GA+ Sbjct: 334 LAANEENKNERAVEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAM 393 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 394 QDNAMLSKWAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 453 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV + WTLFSP++V Sbjct: 454 VCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEEKEWTLFSPNDV 513 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL+G+ FE YE YERQA G+I+V +K+ A+ LWRKML MLFETGHPWITFKD C Sbjct: 514 PDLHDLFGRAFEDRYEEYERQAAAGKIRVHKKVRALDLWRKMLGMLFETGHPWITFKDAC 573 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N+RSPQQH GVVHSSNLCTEITLN+ ++EE AVCNLGSINL H + + D +KLA T++ Sbjct: 574 NLRSPQQHAGVVHSSNLCTEITLNTKANEEIAVCNLGSINLAQHIVDGKLDEEKLAQTVK 633 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TAVR+LDNVIDIN + +E A+ SN HR +GLGLMGFQ AL+ ++I Y+S +AV AD S Sbjct: 634 TAVRMLDNVIDINYYAVESARTSNMRHRPVGLGLMGFQDALYKMNISYSSDDAVTFADRS 693 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744 ME IS+HAI AS ELA+ERG+YS+F GSLW +G+ P+DS+ LL E R E + ++++S Sbjct: 694 MEAISYHAIKASSELAKERGSYSTFDGSLWSKGILPLDSLDLLIENRGEKFIKVDKSSTH 753 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD L++ VKT GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN Sbjct: 754 DWDTLRETVKTQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNP 813 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV++LK+R LWD M++DLKY++GS+ I+RIP+DLK +++TAFE++P W++E+ASRRQ Sbjct: 814 YLVHDLKERGLWDSVMVNDLKYYEGSLQKIDRIPEDLKALYSTAFEVEPRWIVEAASRRQ 873 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWIDQAQSLNLY+ +GKKLD YR AW GLKTTYYLR+ SAT+ EKST+ G LN Sbjct: 874 KWIDQAQSLNLYIAGANGKKLDITYRMAWYSGLKTTYYLRALSATTTEKSTV--TSGTLN 931 Query: 925 AV-------PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 AV + +P +C+ D +CE CQ Sbjct: 932 AVSSGGGASQSAAAAAEPAPAAVPLACSLDDPDCEACQ 969 >gi|34497742|ref|NP_901957.1| ribonucleotide-diphosphate reductase subunit alpha [Chromobacterium violaceum ATCC 12472] gi|34103598|gb|AAQ59959.1| ribonucleoside-diphosphate reductase system [Chromobacterium violaceum ATCC 12472] Length = 972 Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/935 (59%), Positives = 698/935 (74%), Gaps = 24/935 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 + I+RNG V F+P KIS A+ KAF+AV G + S ++D + LTEQ V L++ Sbjct: 52 KTIRRNGAVVPFEPVKISIAMTKAFLAVMGNQGATSASIRDKVAQLTEQVVNALMRRKPE 111 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 +HIEDIQDQVE SLM+ G H + R YVLYRE+RS RAA + +A + ++ ++ Sbjct: 112 GGAIHIEDIQDQVELSLMRFGEHDVARAYVLYREQRSQERAA----RGEALTSVQINVLR 167 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG + + RL +E A L + +L+ET KN+YDG+ E ++ + I ++R++ Sbjct: 168 KDGRKLPLDVPRLRASIEAASKNLAGIDVDAILAETLKNIYDGVPEEEVGKSAILAARSM 227 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE++P Y VTAR L+ +R E+L + + EM Y YF YI++G+ A LL Sbjct: 228 IEQDPAYDYVTARLLMGNIRLEILG------EAVSQDEMGKQYAPYFADYIKKGIAAELL 281 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 E + ++DL L L ERD F YLGLQ LYDRYFLH++G+RIEMPQAF+MRVAMGLA Sbjct: 282 DEKLAEYDLKKLGAALDAERDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFYMRVAMGLA 341 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L E +E RA+EFY +LSSF FM STPTLFNSGTR QLSSC+LTT+ DDL GI+ ++E Sbjct: 342 LNEVNREDRAIEFYKVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTIADDLDGIYEGIKE 401 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC Sbjct: 402 NALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 461 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWH D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + W+LFSP E D Sbjct: 462 AYLETWHADIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWSLFSPSETPD 521 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHDLYG+ FE AY YE + RGE+KV+++I A++LWRKMLTMLFETGHPW+TFKDPCNI Sbjct: 522 LHDLYGQAFEKAYTAYEARGARGELKVYKRIPALSLWRKMLTMLFETGHPWVTFKDPCNI 581 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTA 628 RSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL AH + D DKL TIRTA Sbjct: 582 RSPQQHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLSAHLKEDGSLDADKLQRTIRTA 641 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ LH+ +PY S AVE ADESME Sbjct: 642 LRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHIKRVPYGSNAAVEFADESME 701 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 +++ A AS ELA+ERG Y S+ GSLWD+GV P DSI LLA R L ++RT R+ W+ Sbjct: 702 MVAYFAYLASTELAEERGRYPSYSGSLWDRGVLPHDSINLLAAERGGYLEVDRTERMDWN 761 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L++R+K GMRNSNC+AIAPTATIANI GVS SI+P+YQNL+VKSN+SG+FTV N +LV Sbjct: 762 KLRERIKQHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFTVTNEYLV 821 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK LWDE M++DLKY DGS+G I+R+P +LK I+ATAFE+DP WL+E+ASRRQKWI Sbjct: 822 RDLKAAGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYATAFEVDPKWLVEAASRRQKWI 881 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLNLY+ SGKKLD +Y+ AWL GLKTTYYLR+ +ATS EKST +G G+LNAV Sbjct: 882 DQAQSLNLYMAGASGKKLDELYKHAWLRGLKTTYYLRTLAATSAEKSTGRG--GELNAVS 939 Query: 928 V---TDPNSSTHSLGIPSS----CTSDT-ECEVCQ 954 T P ++ + P++ C+ D +CE CQ Sbjct: 940 SQAQTAPAAAVDN--TPATDAKFCSIDNPDCESCQ 972 >gi|255019899|ref|ZP_05291974.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254970679|gb|EET28166.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 945 Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 570/945 (60%), Positives = 700/945 (74%), Gaps = 42/945 (4%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V FD SKI A+ KAF+AV+G + S RV+D++ LT Q V L + Sbjct: 23 RVIRRNGSVVPFDASKIQVAMTKAFLAVDGGTGAASARVRDLVGRLTAQVVETLERRQPG 82 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 +HIEDIQDQVE +LM++G H++ R YVLYREER+ RA Q S A AP L++ Sbjct: 83 GGTLHIEDIQDQVELALMRAGEHEVARAYVLYREERARERA-QKREASPAS-APILRVRH 140 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + +RL ++ EACSGL + VS +L T +N+YDG+SE +L A I + R Sbjct: 141 ADGSEQPLDLERLRQVIGEACSGLGEAVSVDAILQATQRNLYDGISEEELFQAPILACRV 200 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIE++P YA TAR LL+++RREVL + ATH EM YPEYF Y+ G++ L Sbjct: 201 LIEQDPAYAHATARLLLDRVRREVLG------EPATHAEMAQRYPEYFKDYLRTGIQHEL 254 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + FDL +A L+ ERD F+YLGLQILYDRYFLH+ RIE+PQAF+MRVAMGL Sbjct: 255 LDPRLAQFDLDRIAAALRPERDLDFQYLGLQILYDRYFLHVRERRIELPQAFWMRVAMGL 314 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E ++E++A+ FY +LS F F+ STPTLFN+GT PQLSSCFLTTV DDL GI+ A++ Sbjct: 315 ALEEIDREEQAIAFYEVLSRFEFVSSTPTLFNAGTLRPQLSSCFLTTVADDLDGIYEAIK 374 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KYSGGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 375 DNALLSKYSGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 434 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV N WTLFSP+EV+ Sbjct: 435 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVEANGQWTLFSPNEVA 494 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G+ F+ YE+YER AD GEI +F+++ A+ LWRKMLTMLFETGHPWITFKDPCN Sbjct: 495 DLHDLTGQAFKERYEHYERLADAGEITLFKRLPALQLWRKMLTMLFETGHPWITFKDPCN 554 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-------------- 614 +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+AH Sbjct: 555 LRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVAHLRAGLPGQGLRTEASADE 614 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D DKLA T+R A+R+LDNVID+N + + KA+ SN HR +GLGLMGF AL L Sbjct: 615 LLALVDTDKLARTVRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFSDALLALR 674 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 IPYAS AVE AD S E IS+HAI AS +LA+ERG+Y SF GSLW QG+ P+DSI LLA Sbjct: 675 IPYASQAAVEFADISQELISYHAIDASADLARERGSYRSFPGSLWSQGILPLDSIELLAR 734 Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++R+ RL W+ L+ +VK GMRNSNC+AIAPTATI+NI GVSQ I+P YQNLY Sbjct: 735 SRVAGVDVDRSQRLDWESLRTKVKG-GMRNSNCLAIAPTATISNIVGVSQGIEPIYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTVVN++LV +LK DLWDE M++DLKY DGS+ I+RIP+ LK ++A AFE Sbjct: 794 VKSNLSGEFTVVNAYLVRDLKAADLWDEVMVNDLKYFDGSVVPIDRIPEALKPLYANAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDP WL+E+A+RRQKW+DQ+QSLNLY +PSGKK+D YR AW GLKTTYYLRS AT+ Sbjct: 854 IDPQWLVEAAARRQKWLDQSQSLNLYFGQPSGKKIDETYRLAWRRGLKTTYYLRSLGATA 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 EKST+ G LNAVP G +C D CE CQ Sbjct: 914 AEKSTVS--KGVLNAVP-----------GQVKACAIEDPGCEACQ 945 >gi|295677727|ref|YP_003606251.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1002] gi|295437570|gb|ADG16740.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1002] Length = 1003 Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/904 (61%), Positives = 686/904 (75%), Gaps = 18/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 39 KVIRRNGTVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRSLLRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ RA H+ DA P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRNQARAHDDHA--DAASTPGLNVT- 155 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E AC+ L D VS++ +++ET KN+YDG+ S + + I ++RT Sbjct: 156 DNGITRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 215 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ GV+A L Sbjct: 216 MIEKDPAYSQVTARILLHTIRREILE------EEVTQAEMGERYAEYFPQFIKRGVQAEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH + RIEMPQAFFMRVAMGL Sbjct: 270 LDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDNVRIEMPQAFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 330 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 450 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 509 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 510 DLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 569 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 570 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTVALDHDKLKR 629 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LH+L PYASPEAVE A Sbjct: 630 TISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHVLRTPYASPEAVEFA 689 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R + ++ + Sbjct: 690 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVALLAEARGGYVEVDSSE 749 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W L+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 750 SMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 809 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP+WL+ESASR Sbjct: 810 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPVWLVESASR 869 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 870 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 927 Query: 923 LNAV 926 LNAV Sbjct: 928 LNAV 931 >gi|54297687|ref|YP_124056.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella pneumophila str. Paris] gi|53751472|emb|CAH12890.1| hypothetical protein lpp1738 [Legionella pneumophila str. Paris] Length = 942 Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/928 (60%), Positives = 698/928 (75%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 27 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K + L I Sbjct: 87 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K + AT EM +YP YF YIE+G+ + Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + ISAV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGS+NL AH N + D KL TI TA Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSVNLPAHIKNGKLDEQKLKRTISTA 624 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L +R+ +L W+ Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIP++LK+ +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRRQKWI 864 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922 Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 + D P +C+ +D +CE CQ Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942 >gi|253998798|ref|YP_003050861.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus sp. SIP3-4] gi|253985477|gb|ACT50334.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus sp. SIP3-4] Length = 937 Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/940 (60%), Positives = 705/940 (75%), Gaps = 28/940 (2%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 + +QVI+R+G F KIS A+ KAF+AV G+ ++ S ++ ++ LT+ V L++ Sbjct: 15 LPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISSHMRTEVQALTDTVVAALVR 74 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 + +HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAAQ P L Sbjct: 75 RKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREKRAAERAAQQAPA------PTL 128 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ D G + + + L +V EAC L D V +++ + +++YDG+ ++ ALI Sbjct: 129 HVLQD-GKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAIRDLYDGMPFDEVRRALIL 187 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S+R+LIE+EP Y VTAR L+ +R EVL + +H M Y EYF +YI+ G+ Sbjct: 188 SARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKTGI 241 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 A LL E + FDL LA+ L +RD F YLGLQ LYDRYFLHI RIE+PQ FFMRV Sbjct: 242 AAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFMRV 301 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL GI+ Sbjct: 302 AMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDGIY 361 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGGKR Sbjct: 362 QAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKR 421 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV NA WTLFSP Sbjct: 422 KGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLFSP 481 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWITFK Sbjct: 482 SDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWITFK 541 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDK 620 DPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D K Sbjct: 542 DPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQAK 601 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 LA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS AV Sbjct: 602 LAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASSAAV 661 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739 E AD +ME + ++A AS LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R ++ ++ Sbjct: 662 EFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVEVD 721 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 R+S L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+F Sbjct: 722 RSSTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEF 781 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 TVVN LV +LK R LWDE MI+D+KY+DGS+ IER+P DLK+++ATAFE+DP+WL+E+ Sbjct: 782 TVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLVEA 841 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+RRQKWIDQAQSLNLY PSGKKL+ +Y AWL GLKTTYYLRS ATS EKST +G Sbjct: 842 AARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKSTGQG- 900 Query: 920 DGKLNAV----PVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954 G+LNAV PV+ + S P C D CE CQ Sbjct: 901 -GELNAVSSGLPVSAASPSAEPE--PKQCLIDDPGCEACQ 937 >gi|256377254|ref|YP_003100914.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema mirum DSM 43827] gi|255921557|gb|ACU37068.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema mirum DSM 43827] Length = 950 Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/958 (59%), Positives = 713/958 (74%), Gaps = 26/958 (2%) Query: 15 FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74 P+ P V+V++R+G V++FD +K+S A+ KAF+AVEG GA S R+ +++ Sbjct: 1 MPTTTTPAAVAKAPVRVVRRDGAVSAFDATKVSVAMTKAFLAVEGDGAVASSRLHPLVEE 60 Query: 75 LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 LT Q LL+H + + +H+E IQDQVE LM+ GHH + R YVLYREER+ VRAA + Sbjct: 61 LTGQVEAALLKHVRPDVALHVEQIQDQVELVLMRGGHHAVARAYVLYREERAKVRAATAS 120 Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + + +++ DG + + R+ +V EAC+GL DVS+ VL+ET +N+YDG++ Sbjct: 121 APAP-----TIRVTHPDGQVTPLDWDRVAAVVAEACAGLTDVSADTVLAETRRNLYDGIT 175 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 +L TA I ++RTL+E EP+Y+ +AR LL+KLRRE L+ V +P +AT +M Y + Sbjct: 176 VDELATAQIMAARTLVETEPDYSFASARLLLDKLRREALSHVAGEPVEATGEQMS--YVD 233 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 YF Y+E GV L + FDL LA ++ ERD AF++LG+Q LYDRYFLH +G R Sbjct: 234 YFPAYVELGVSVDRLDPELRTFDLPRLAAAIRPERDLAFDFLGMQTLYDRYFLHDDGVRY 293 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQAFFMRVAMGLAL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT PQLSSCFLT Sbjct: 294 ELPQAFFMRVAMGLALREDDREARAIEFYGLLSSFDFMCSTPTLFNSGTTRPQLSSCFLT 353 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV DDL IF + NA+LAKYSGGLGNDWTPVRG+GAHI GTNG+SQGV+PFLK+ANDT Sbjct: 354 TVDDDLDAIFRGYRNNALLAKYSGGLGNDWTPVRGMGAHIKGTNGQSQGVVPFLKIANDT 413 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AVAVNQGGKRKGA CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV Sbjct: 414 AVAVNQGGKRKGAACAYLETWHVDVEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVE 473 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +A WTLFSPDE DLH+LYG F Y YE ADRGEI+V R++ AV LWR+MLT+LF Sbjct: 474 ADAEWTLFSPDETPDLHELYGTAFAQRYRAYEEAADRGEIRVHRRVRAVDLWRRMLTVLF 533 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL H Sbjct: 534 ETGHPWITFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLANHVTPT 593 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D D+LA T RTAVR+LDNVIDIN +TI +A++SN HR +GLGLMGF +L + IPY Sbjct: 594 GLDRDRLARTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFADSLFVQRIPY 653 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR- 733 AS EAVE AD SME ISFHA+ AS +LA ERG+Y SF+GSLW +GV PIDSI LLA+ R Sbjct: 654 ASSEAVEFADLSMELISFHALDASADLAAERGSYESFEGSLWSRGVLPIDSIALLADARG 713 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 L M+ +S L W ++ + + GMRNSN MAIAPTATI+NICGV QSI+P Y+NL+VK+ Sbjct: 714 GALDMDTSSTLDWSSVRDKARR-GMRNSNVMAIAPTATISNICGVGQSIEPLYRNLFVKA 772 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NMSGDFTV+N LV +LK R LWD AM+SDLKY DG++ ++R+P +LK ++ATAFE+ Sbjct: 773 NMSGDFTVLNRHLVADLKARGLWDAAMVSDLKYFDGALTAVDRVPAELKALYATAFELSS 832 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 WL+E+ASRRQKWIDQAQSLNLYL PSG+ LD +YR AW GLKTTYYLRS SAT VEK Sbjct: 833 DWLVEAASRRQKWIDQAQSLNLYLAAPSGRALDELYRLAWRKGLKTTYYLRSASATHVEK 892 Query: 914 STLKGVDGKLNAVPV-------------TDPNSSTHSLGIP---SSCT-SDTECEVCQ 954 STL+G DGKL V + + + L +P ++C+ +D +CE CQ Sbjct: 893 STLRGTDGKLTGVTLPPAAAPAARPAASSPSPAPVPELVLPAEGAACSITDPDCEACQ 950 >gi|152988045|ref|YP_001349578.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa PA7] gi|150963203|gb|ABR85228.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Pseudomonas aeruginosa PA7] Length = 963 Score = 1159 bits (2997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/952 (58%), Positives = 703/952 (73%), Gaps = 17/952 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE R+ R Sbjct: 76 RRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREARAAERKNA 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + A P ++I DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 GATSDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + ATHHEM LY Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMAELY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + YIE+G + L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGI 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHDLYGK FE YE YE A G++K+ + + A LWRKML+M Sbjct: 495 VFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S A+ AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PIDS L E Sbjct: 675 PYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEE 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++ + L W L++RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DLK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSDT-ECEVCQ 954 EKST+ GKLNAV + +P +C+ D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963 >gi|254784924|ref|YP_003072352.1| ribonucleotide-diphosphate reductase subunit alpha [Teredinibacter turnerae T7901] gi|237686086|gb|ACR13350.1| ribonucleoside-diphosphate reductase alpha subunit, class I [Teredinibacter turnerae T7901] Length = 961 Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/958 (59%), Positives = 720/958 (75%), Gaps = 12/958 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P+ V + + + S+A P +++ VIKRNG + + KI+ A+ KAF+AVEG A Sbjct: 10 PTSPVPQANPHSNSSIANAAPGQLR---VIKRNGTLVPYTDDKIAVAMTKAFLAVEGGTA 66 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + + NLT+Q + S +HIE+IQDQVE +LM++G HK+ R+YVLYR Sbjct: 67 AASSRIHETVANLTQQISATFKRRMPSGGTIHIEEIQDQVELTLMRTGEHKVARDYVLYR 126 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ER+ +RA + P++ ++ DG+L + RL +V EAC+GL+DV + +L Sbjct: 127 AERAKLRAEKEKLSQANVDFPEINVLQPDGSLQPLDVMRLHTVVSEACAGLKDVDGEAIL 186 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 E +N+Y+G+S DL T+L+ S+RTL+EKEPNY TAR L++KLR E L + Q Sbjct: 187 KEAMRNLYEGVSAEDLNTSLVISARTLVEKEPNYTYATARLLMDKLRAEALAFLDVATQ- 245 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 AT EM+ YP YI G++ LL ++ DFDL L L ERD F YLGLQ LY Sbjct: 246 ATSAEMEMFYPNALPAYISRGIELELLDPALADFDLQLLGAALIPERDQQFTYLGLQTLY 305 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 DRYFLH +G+R E+PQ FFMRVAMGLA++E +K RA+EFY LLSSF +M STPTLFN+G Sbjct: 306 DRYFLHSDGTRFELPQIFFMRVAMGLAMREDDKNGRAIEFYRLLSSFDYMSSTPTLFNAG 365 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T PQLSSC+LT+VPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ Sbjct: 366 TLRPQLSSCYLTSVPDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQ 425 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+PFLKVANDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTA Sbjct: 426 GVVPFLKVANDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTA 485 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 NW+PDLFMKRV ++ WTLF+P V DLHDL+G FE YE+YER+A G IK F+K+ A Sbjct: 486 NWVPDLFMKRVFEDKEWTLFTPSTVPDLHDLFGLAFEERYEHYEREAAAGNIKPFKKVRA 545 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCN 601 V LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ ++EE AVCN Sbjct: 546 VDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTKANEEIAVCN 605 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL H + + D +KL ++ TAVR+LDNVIDIN ++++ A+ SN HR +GLG+M Sbjct: 606 LGSINLAQHVVDGKLDQEKLQRSVDTAVRMLDNVIDINYYSVDTARNSNLRHRPVGLGIM 665 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ + IPY+S AVE AD SME +S++AISAS LA ERG+YS+F+GSLW QGV Sbjct: 666 GFQDALYKMRIPYSSAAAVEFADRSMEAVSYYAISASSALASERGSYSTFEGSLWSQGVL 725 Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDSI LLA+ R E + ++T+ L WD L+ VKT GMRNSN MAIAPTATIANI GVS Sbjct: 726 PIDSIQLLAKNRGEQFIEQDQTTTLDWDTLRNTVKTQGMRNSNVMAIAPTATIANITGVS 785 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD M++DLKY++GS+ I+RIPD Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVFKIDRIPD 845 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK ++ATAFE++P W++++ASRRQKWIDQAQSLNLY+ +GKKLD YR AW GLKT Sbjct: 846 DLKLLYATAFEVEPRWIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYRMAWYRGLKT 905 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--NSSTHSLGIPSSCT-SDTECEVCQ 954 TYYLR+ +AT+ EKST+ G LNAV P N S +P +C+ D +CE CQ Sbjct: 906 TYYLRALAATTTEKSTID--TGSLNAVSSGAPAANISAGPADVPKACSLDDPDCEACQ 961 >gi|15596353|ref|NP_249847.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa PAO1] gi|107100606|ref|ZP_01364524.1| hypothetical protein PaerPA_01001631 [Pseudomonas aeruginosa PACS2] gi|116049088|ref|YP_792110.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa UCBPP-PA14] gi|218892880|ref|YP_002441749.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa LESB58] gi|254234290|ref|ZP_04927613.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa C3719] gi|296390474|ref|ZP_06879949.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa PAb1] gi|313106127|ref|ZP_07792382.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 39016] gi|9947078|gb|AAG04545.1|AE004545_8 NrdA, catalytic component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa PAO1] gi|115584309|gb|ABJ10324.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126166221|gb|EAZ51732.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa C3719] gi|218773108|emb|CAW28920.1| NrdA, catalytic component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa LESB58] gi|310878884|gb|EFQ37478.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 39016] Length = 963 Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/952 (58%), Positives = 703/952 (73%), Gaps = 17/952 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE R+ R Sbjct: 76 RRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREARAAERKNA 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + A P ++I DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 GAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + ATHHEM LY Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMAELY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + YIE+G + L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGI 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHDLYGK FE YE YE A G++K+ + + A LWRKML+M Sbjct: 495 VFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S A+ AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PIDS L E Sbjct: 675 PYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEE 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++ + L W L++RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DLK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSDT-ECEVCQ 954 EKST+ GKLNAV + +P +C+ D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963 >gi|170720378|ref|YP_001748066.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida W619] gi|169758381|gb|ACA71697.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas putida W619] Length = 959 Score = 1157 bits (2994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/948 (58%), Positives = 705/948 (74%), Gaps = 13/948 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA + Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +++ + P ++I + DG+L + RL I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 ANTDAAVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + ATHHEM LY Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + YI +GV+ LL+ ++ DFDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYIAKGVEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A LWRKML+M Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E Sbjct: 675 PYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734 Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK ++ATAFE Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913 Query: 911 VEKSTLKGVDGKLNAVPV---TDPNSSTHSLGIPSSCTSD-TECEVCQ 954 EKST+ GKLNAV + P + +P +C D +CE CQ Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPAQAAGPAPVPKACAIDEPDCEACQ 959 >gi|146308171|ref|YP_001188636.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas mendocina ymp] gi|145576372|gb|ABP85904.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas mendocina ymp] Length = 968 Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/917 (60%), Positives = 701/917 (76%), Gaps = 11/917 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE +++ R A Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQANKRKAS 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + S+ P P ++I DG+L + RL+ I+ EAC GL +V ++ ET KN+YDG Sbjct: 136 AGSEIAQP-HPSIRITAADGSLQPLDMGRLQTIIREACEGLAEVDGALIERETLKNLYDG 194 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E LT + Q ATHHEM LY Sbjct: 195 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEALTFL-GITQSATHHEMVDLY 253 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+++GV+ LL + ++DL L L +ERD F YLGLQ LYDRYF+H +G Sbjct: 254 AKALPAYVDKGVEFELLDPKLKEYDLEKLGKALNHERDQQFTYLGLQTLYDRYFIHKDGI 313 Query: 313 RIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 R E+PQ FFMRVAMGLA++E + +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC Sbjct: 314 RFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSC 373 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV Sbjct: 374 YLTTVPDDLSGIYSAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVV 433 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMK Sbjct: 434 NDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMK 493 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV ++ WTLFSP EV DLHDL GK FE YE YE + G+IK+++ I A LWRKML+ Sbjct: 494 RVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLS 553 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS+NL+ H Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI 613 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + + D +KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLGLMGFQ AL+L H Sbjct: 614 VDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQH 673 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 I Y S A+E AD SME IS++AI AS +LA+ERGAYS+F+GSLW +G+ P+DS +L E Sbjct: 674 IAYGSDAAIEFADRSMEAISYYAIQASCDLAEERGAYSTFEGSLWSKGILPLDSQQILIE 733 Query: 732 VRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + + ++ + L W L++RVK G+RNSN MAIAPTATI+NI GVSQSI+P+YQNL Sbjct: 734 ARGQKYIDVDLSESLDWAPLRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNL 792 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 YVKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DLK ++ATAF Sbjct: 793 YVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAF 852 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 E++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +AT Sbjct: 853 EVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAAT 912 Query: 910 SVEKSTLKGVDGKLNAV 926 S EKST+ GKLNAV Sbjct: 913 STEKSTIN--TGKLNAV 927 >gi|54294661|ref|YP_127076.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella pneumophila str. Lens] gi|53754493|emb|CAH15977.1| hypothetical protein lpl1738 [Legionella pneumophila str. Lens] Length = 942 Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/928 (60%), Positives = 696/928 (75%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 27 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K + L I Sbjct: 87 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K + AT EM +YP YF YIE+G+ + Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 265 LDPKMTDFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + I AV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTIPAVKLWRRMLSMLFETGHPWLTFKDPCN 564 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH N + D KL TI TA Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 625 IRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L +R+ +L W+ Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIP++LK +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKSRYATSFEIDPMWLVEAASRRQKWI 864 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922 Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 + D P +C+ +D +CE CQ Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942 >gi|307731038|ref|YP_003908262.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia sp. CCGE1003] gi|307585573|gb|ADN58971.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1003] Length = 1000 Score = 1155 bits (2989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/904 (61%), Positives = 686/904 (75%), Gaps = 19/904 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALLRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ RA H + A P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARA---HDEQAAGSTPGLSVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E AC+ L D VS++ +++ET KN+YDG+ S + + I ++RT Sbjct: 155 DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ GV+A L Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQAEMGERYAEYFPQFIKRGVQAEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL Sbjct: 269 LDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKR 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS EAV+ A Sbjct: 629 TISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R + ++ + Sbjct: 689 DTSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W EL++R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 749 SMDWSELRQRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926 Query: 923 LNAV 926 LNAV Sbjct: 927 LNAV 930 >gi|74317994|ref|YP_315734.1| ribonucleotide-diphosphate reductase subunit alpha [Thiobacillus denitrificans ATCC 25259] gi|74057489|gb|AAZ97929.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus denitrificans ATCC 25259] Length = 974 Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 713/944 (75%), Gaps = 32/944 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F P+KI+ A+ KAF+AV+G A+ S R++++++ +T Q LL+ N + Sbjct: 44 KIIRRNGAVVGFAPNKIAVAVTKAFIAVQGGQAAASARIRELVEAITSQVTAALLRRNPA 103 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIED+QDQVE +LM+SG H++ R YVLYRE+R+ RAAQ A P++++ + Sbjct: 104 GGTFHIEDVQDQVELALMRSGEHEVARAYVLYREKRAQERAAQK-----AAGVPEVQLHV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ++DG ++ RL ++ +ACS L + V ++ ++ +++YDG+ +++E AL+ ++R Sbjct: 159 IEDGVRKPLDTARLAGLLADACSDLGESVKAEPIMHTVLRDLYDGVPMAEVEKALVLAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 ++IE++P Y+ VTAR LL +R EVL + T +M Y EYF +I++G+ A Sbjct: 219 SMIEQDPAYSLVTARLLLNSIRHEVLG------EAVTQAQMSERYAEYFPAFIKKGIAAE 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL E + FDL LA L RD+ F YLGLQ LYDRYFLHI +RIE+PQAFFMRVAMG Sbjct: 273 LLDEKLGQFDLARLARVLDAGRDYQFGYLGLQTLYDRYFLHIEENRIELPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA+ E ++E RA+EFY +LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL GI+ A+ Sbjct: 333 LAINEIDRESRAIEFYQVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVTDDLDGIYQAI 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENAML KY+GGLGNDWTPVR +GA I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENAMLQKYAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP++V Sbjct: 453 VCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVMEGGDWTLFSPNDV 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDLYG++F AY YER+ADRGE+K++++I A+ LWRKML+MLFETGHPWITFKDPC Sbjct: 513 PDLHDLYGRKFAEAYTEYERKADRGELKLYKRIPALQLWRKMLSMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 NIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+ H + + D DKL +TI T Sbjct: 573 NIRSPQQHVGVVHSSNLCTEITLNTNDHEVAVCNLGSVNLVNHLKDGKLDLDKLKNTIHT 632 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNV+D+N + + KA+ SN HR +GLG+MGFQ AL L + YAS +AVE AD SM Sbjct: 633 AMRMLDNVVDVNYYAVGKARNSNLKHRPVGLGIMGFQDALQELRVAYASNDAVEFADRSM 692 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746 E ++++A AS ELAQERG YSS++GSLW +G+ P DS LL E R L ++ ++ L W Sbjct: 693 EAVAYYAYWASTELAQERGRYSSYEGSLWSKGILPHDSNRLLLEERGGYLEVDSSATLDW 752 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L++R+ GMRNSNC+AIAPTATIANI GVS SI+P+YQNLYVKSN+SG+FTV N +L Sbjct: 753 DSLRQRIAQYGMRNSNCLAIAPTATIANIVGVSASIEPTYQNLYVKSNLSGEFTVANKYL 812 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK+ +WDE M++D+KY DGS+ I+RIP +L+ ++ATAFE++P WL+E ASRRQKW Sbjct: 813 VADLKKLGMWDEVMVADIKYFDGSLARIDRIPAELRALYATAFEMEPSWLVECASRRQKW 872 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLN+Y+ SGKKLD IY+ AWL GLKTTYYLR+ ATS EKST KG G+LNAV Sbjct: 873 IDQAQSLNIYMAGASGKKLDDIYKLAWLRGLKTTYYLRTLGATSAEKSTGKG--GELNAV 930 Query: 927 P------VTDPNSSTHSLGIP----SSCTSDT------ECEVCQ 954 ++ +++ +L +P CT ECE CQ Sbjct: 931 SAHVGGGMSAMDAAAANLPVPEIEGKVCTMRPGDPGFEECEACQ 974 >gi|253997286|ref|YP_003049350.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera mobilis JLW8] gi|253983965|gb|ACT48823.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera mobilis JLW8] Length = 938 Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/933 (60%), Positives = 699/933 (74%), Gaps = 22/933 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVI+RNG +F+ KIS AI KAF+AVEG ++ S RV+D + +L++ L++ Sbjct: 21 LQVIRRNGAAVTFNLDKISIAITKAFLAVEGNHSAASQRVRDQVTSLSQIVNHALIRRLP 80 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +HIEDIQDQVE +LM++G+H + R YVLYRE+R+ RAA+ + S+ A + I Sbjct: 81 TGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKATTSEPSHALNVNI- 139 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 DG L+ N K+L +V EAC L +V +V+ + +++YDG+ +++ ALI S+R Sbjct: 140 --DGKLVPLNIKQLNEMVAEACLNLGNEVDVNLVVEQAVRDLYDGIPFTEVYKALILSAR 197 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 +LIE EP Y VTAR L+ +R EVL ++ +H EM Y EYF RYI+ G+ A Sbjct: 198 SLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAEMDAHYAEYFPRYIKIGIDAD 251 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + FDL LAN L ERDF F YLG+Q LYDRYFLHI RIE+PQ FFMRVAMG Sbjct: 252 LLDPRLAQFDLDKLANALVKERDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMRVAMG 311 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA+ E ++E RA+EFYN+LS+F FM STPTLFN+GT H QLSSC+LTTV DDL GI+ + Sbjct: 312 LAINEIDREARAIEFYNVLSTFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGIYQGI 371 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV NDTAVAVNQGGKRKGA Sbjct: 372 KENALLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGA 431 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RVT+ WTLFSP +V Sbjct: 432 VCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEQGEWTLFSPSDV 491 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD YGK FE AY YER+AD GEIK+F+++ A+ +WRKML+MLFETGHPWITFKDPC Sbjct: 492 PDLHDKYGKAFEKAYVEYERRADTGEIKLFKRVPAIQMWRKMLSMLFETGHPWITFKDPC 551 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623 NIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NLL H N + D DKL + Sbjct: 552 NIRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLLQHLKEVNGNLELDNDKLQA 611 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI+ +R+LDNV+DIN + + KA+ SN HR +G+G+MGFQ+ LH + IPYAS +AVE A Sbjct: 612 TIKVGMRMLDNVVDINFYPVGKARNSNTRHRPVGMGIMGFQNCLHAMRIPYASMDAVEFA 671 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTS 742 D +ME + ++A AS LA+ERG YSSFKGSLWDQG+ P+D++ LL AE + ++R+ Sbjct: 672 DRAMEMVCYNAYWASTVLAEERGPYSSFKGSLWDQGILPLDTLNLLEAERGGNVEVDRSK 731 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+FT+V Sbjct: 732 TLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTIV 791 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LVN+LK R LWD M+SDLKY DGS+ IER+P DLK+++ATAF++DP WLIE+A+R Sbjct: 792 NEQLVNDLKARGLWDTVMVSDLKYFDGSLAPIERVPADLKQLYATAFDVDPSWLIEAAAR 851 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLNLY PSGKKL+ Y AW GLKTTYYLRS AT+ EKST G G+ Sbjct: 852 RQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSLGATAAEKST--GSGGE 909 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 LNAV +T P C+ D +CE CQ Sbjct: 910 LNAVSA----HTTAPEPAPKMCSIDNPDCESCQ 938 >gi|119478321|ref|ZP_01618352.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2143] gi|119448661|gb|EAW29906.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2143] Length = 962 Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/931 (59%), Positives = 701/931 (75%), Gaps = 9/931 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 V+VIKRNG V S+D SKI+ AI KAF+AVEG A+ S R+ + ++ L+ Q + Sbjct: 36 VRVIKRNGTVVSYDDSKIAVAITKAFLAVEGGSAAASSRIHETVEKLSLQVSAIFKRRMP 95 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIEDIQDQVE +LM+SG HK+ R+YVLYREER R + S+ P +++ Sbjct: 96 SGGTIHIEDIQDQVELALMRSGEHKVARDYVLYREERRLQREEKKASEP-TKAHPTIRVT 154 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + + R+E++V EAC GL DV +++++ E KN+YDG+ +D+ T+L+ +SRT Sbjct: 155 LSDGSQVPLDLGRMEVVVSEACDGLADVKAQVIIDEALKNLYDGVPIADVNTSLVITSRT 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY+ VTAR LL+ LR E L + AT EM LY + YI +G++ L Sbjct: 215 LVEKEPNYSYVTARLLLDNLRAEALPFL-GIANSATQSEMASLYAKALPAYINKGIELEL 273 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++D+DL L L RD F YLGLQ LYDRYF+H N RIE+PQ FFMRVAMGL Sbjct: 274 LAPNLLDYDLDKLGQALDANRDQLFNYLGLQTLYDRYFIHSNDIRIELPQIFFMRVAMGL 333 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A +E +E RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL+GI+GA+Q Sbjct: 334 AYREENREDRAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQ 393 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 394 DNAMLSKWAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 453 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLFMKRV + WTLFSP++V Sbjct: 454 CAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDGEWTLFSPNDVP 513 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDLYG+ FE Y YE Q G++K+F+ + A LWRKML MLFETGHPWITFKDPCN Sbjct: 514 DLHDLYGEAFETRYTEYEAQCKSGDMKLFKTVRAQELWRKMLGMLFETGHPWITFKDPCN 573 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 IRSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGS+NL H + N D KL TI TA Sbjct: 574 IRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSVNLAQHVSENGLDLSKLEKTITTA 633 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR +GLGLMGFQ AL+ H+ Y S +AVE AD SME Sbjct: 634 VRMLDNVIDINYYSVGQAETSNMRHRPVGLGLMGFQDALYNQHMAYGSDQAVEFADRSME 693 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPW 746 IS+ AI AS LA+ERG+YS+F+GSLW QG+ PIDS+ L R D + ++++ L W Sbjct: 694 AISYFAIQASSALAEERGSYSTFEGSLWSQGILPIDSVKTLIAERGNDYIDVDQSQTLDW 753 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+ RV+ GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN L Sbjct: 754 SSLRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPHL 813 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK R LWD M++DLKY++GS+ NI+R+P ++K+++ATAFE++P W++++ASRRQKW Sbjct: 814 VKDLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEPRWIVDAASRRQKW 873 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +AT EKST+ G LNAV Sbjct: 874 IDQAQSLNLYISGASGKKLDITYRMAWYKGLKTTYYLRALAATGTEKSTID--TGSLNAV 931 Query: 927 P--VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 P ++ +P +C+ D +CE CQ Sbjct: 932 SSKTEAPVAAAGPAPVPEACSLDDPDCEACQ 962 >gi|330811234|ref|YP_004355696.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379342|gb|AEA70692.1| Ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 963 Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/954 (58%), Positives = 710/954 (74%), Gaps = 21/954 (2%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ P L+ P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSNPDLSATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERA-- 133 Query: 133 SHSKSDAPIA--PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190 + S +DAP+ P ++I DG+L + RL IV EAC GL++V ++ ET KN+Y Sbjct: 134 TRSPADAPVQAHPSIRIARADGSLAPLDMGRLNTIVTEACEGLEEVDGDLIQRETLKNLY 193 Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 DG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L+ + + + ATHHEM Sbjct: 194 DGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLSFL-EVAESATHHEMVD 252 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 LY + Y+ +G++ LL+ + +FDL L + +ERD F YLGLQ LYDRYF+H + Sbjct: 253 LYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKD 312 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT PQLSS Sbjct: 313 GVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSS 372 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV Sbjct: 373 CYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKV 432 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFM Sbjct: 433 VNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFM 492 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV + WTLFSP EV DLHDL GK FE YE YE + +IK+F+ + A LWRKML Sbjct: 493 KRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKML 552 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 +MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 553 SMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNH 612 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + + D KL T+ TAVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L Sbjct: 613 IVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQ 672 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 HIPY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS +L Sbjct: 673 HIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILI 732 Query: 731 EVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 R + + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQN Sbjct: 733 AQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQN 791 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK+++ATA Sbjct: 792 LYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATA 851 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +A Sbjct: 852 FEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAA 911 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSL-------GIPSSCTSD-TECEVCQ 954 TS EKST+ GKLNAV + L +P +C D +CE CQ Sbjct: 912 TSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963 >gi|323527396|ref|YP_004229549.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia sp. CCGE1001] gi|323384398|gb|ADX56489.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1001] Length = 1006 Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/904 (61%), Positives = 684/904 (75%), Gaps = 19/904 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALLRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ R H + A P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDEQAAASTPGLSVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E AC+ L D VS++ +++ET KN+YDG+ S + + I ++RT Sbjct: 155 DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ GV+A L Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQAEMGERYAEYFPQFIKRGVQAEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL Sbjct: 269 LDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKR 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS EAV+ A Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELAQERG YSS++GSLWD+G+ P DS+ LLAE R + ++ + Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W EL+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 749 SMDWTELRSRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926 Query: 923 LNAV 926 LNAV Sbjct: 927 LNAV 930 >gi|270156778|ref|ZP_06185435.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella longbeachae D-4968] gi|289164773|ref|YP_003454911.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella longbeachae NSW150] gi|269988803|gb|EEZ95057.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella longbeachae D-4968] gi|288857946|emb|CBJ11806.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Legionella longbeachae NSW150] Length = 941 Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/928 (60%), Positives = 697/928 (75%), Gaps = 15/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V ++D +KI AI KAF+A EG AS S R+ I+ LT Q + Sbjct: 27 LKTIKRNGKVVNYDDTKIKIAITKAFIADEGGTASTSDRIHQQIEELTRQITQVFKRRLP 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S VHIEDIQDQVE +LM+SGH+K+ R YVLYREE R ++ K A L I Sbjct: 87 SGGAVHIEDIQDQVELALMRSGHYKVARAYVLYREEHRKAR--ENELKKQASDQKLLLIT 144 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M DG L +++R++ IV EAC L+ V ++ V+ + +N+Y+ +D+ ALI ++RT Sbjct: 145 MPDGELKPLDTERMDTIVHEACRNLEHVDAEPVIKDALRNLYNEAKFADVHKALIMAART 204 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E L + + AT EM LYP YF Y+ G+K + Sbjct: 205 LVEKEPNYTYVSARLLLDCLRIEALHKLGIEAD-ATFDEMSQLYPAYFKIYVAHGIKQGM 263 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E M DFDL L L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 264 LDEKMADFDLEKLGKALLPERDMKFTYLSLQTLYDRYFIHDQGIRYELPQAFFMRVAMGL 323 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +K ++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 324 AIREKDKNEKAIEFYQLLSSFDYMSSTPTLFNSGTIRPQLSSCYLTTVPDHLDGIYSAIK 383 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +G+HI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 384 DNALLSKYAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 443 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA WIPDLFM RV ++A WTLFSPDEV Sbjct: 444 CAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMMRVREDADWTLFSPDEVP 503 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +LHD +GK FE Y YE +A +G +K + +SAV LWRKML+MLFETGHPW+TFKDPCN Sbjct: 504 ELHDQFGKAFEALYNKYEEKAHQGLMKNVKTVSAVKLWRKMLSMLFETGHPWMTFKDPCN 563 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGSINL AH N + D +KL TI+TA Sbjct: 564 LRSPQQHCGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDIEKLKQTIKTA 623 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR +GLGLMGFQ AL+ L I YAS EAVE AD SME Sbjct: 624 VRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYELKIDYASEEAVEFADSSME 683 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YSS++GSLW +G+ PIDSI LL + R++ L +R+ RL W+ Sbjct: 684 LISYYAIEASCDLAKERGSYSSYEGSLWSKGILPIDSINLLQQARNKYLEQDRSQRLDWE 743 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+SG+FTV+N +LV Sbjct: 744 SLRIKVRTQGMRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINPYLV 803 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIP DLKK +AT+FEIDP+WL+++ASRRQKWI Sbjct: 804 ADLKALELWDEVMVNDLKYFNGSVQPISRIPADLKKRYATSFEIDPIWLVDAASRRQKWI 863 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ EPSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ D LNAV Sbjct: 864 DQAQSLNIYMAEPSGKKLDQLYMHAWIRGLKTTYYLRSMGASNAEKSTV--TDSALNAVK 921 Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 + P +C+ D +CE CQ Sbjct: 922 IMTE--------APKACSILDPDCEACQ 941 >gi|194290771|ref|YP_002006678.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193224606|emb|CAQ70617.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 979 Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/905 (60%), Positives = 686/905 (75%), Gaps = 16/905 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++I++ LT+ V L++ S Sbjct: 39 KIIRRNGAVVAFEPSKIAVAMTKAFLAVNGGQGAASARVREIVEQLTDNVVRALVRSRPS 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 +HIED+QDQVE SLM+SG H++ R YVLYRE+R RA+ S + I + Sbjct: 99 GGAIHIEDVQDQVELSLMRSGEHEVARAYVLYREKRKAERASASAQAVARVQEAGISINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D G + L +++ ACSGL D VS++ +L ET KN+Y+G+ + + + I ++R Sbjct: 159 TDAGVTKPLDIVALHALIDNACSGLGDAVSAEPILKETLKNLYEGVPMTQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TLIEK+P+Y++VTAR LL +R+E+L T + T EM Y EYF ++I G+ A Sbjct: 219 TLIEKDPDYSQVTARILLHTIRKEILGT------EVTQAEMATRYAEYFPKFIARGIAAE 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL E + FDL L L RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAMG Sbjct: 273 LLDEKLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFY LLSSF FM STPTLFNSGT+ QLSSC+LTTV DDL GI+ AL Sbjct: 333 LALNEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVSDDLEGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +NA WTLFSP Sbjct: 453 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENAEWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD GK FE AY YE +A GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKVGKAFEKAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 NIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH A D+ KL Sbjct: 573 NIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLAKQADGSYALDHAKLQ 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TIRTA+R+LDNVIDIN + +EKA+ SN HR +G+G+MGFQ LH+L PY+S AV+ Sbjct: 633 KTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDAAVKF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG Y ++ GSLWD+G+ P DS+ LLAE R L ++ + Sbjct: 693 ADTSMEAVCYYAYQASTELAEERGRYETYTGSLWDRGILPQDSLKLLAEERGGYLDVDMS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S + W L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 SSMDWTSLRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE++P WL+E+AS Sbjct: 813 VNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVS--RG 930 Query: 922 KLNAV 926 LNAV Sbjct: 931 SLNAV 935 >gi|209521090|ref|ZP_03269820.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. H160] gi|209498473|gb|EDZ98598.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. H160] Length = 1003 Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/904 (60%), Positives = 683/904 (75%), Gaps = 18/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ RA H+ +A P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRNQARAHDEHA--EAASTPGLNVT- 155 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E AC+ L D VS++ +++ET KN+YDG+ S + + I ++RT Sbjct: 156 DNGITRPLDMAALRSIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 215 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ G+ A L Sbjct: 216 MIEKDPAYSQVTARILLHTIRREILE------EEVTQAEMGERYAEYFPQFIKRGIGAGL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + + FDL L L RD F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL Sbjct: 270 LDDKLQQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 330 SLNEIDREARAIEFYNILSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVDDDLDGIYEALK 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 450 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 509 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+K+ A LWRKML MLFETGHPWITFKDPCN Sbjct: 510 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKLPAAQLWRKMLGMLFETGHPWITFKDPCN 569 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 570 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKR 629 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LH+L PYAS EAVE A Sbjct: 630 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHMLRTPYASQEAVEFA 689 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R + ++ + Sbjct: 690 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVALLAEARGGYVEVDSSE 749 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W L+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 750 SMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 809 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP+WL+ESASR Sbjct: 810 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPVWLVESASR 869 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 870 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 927 Query: 923 LNAV 926 LNAV Sbjct: 928 LNAV 931 >gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large subunit [Herbaspirillum seropedicae SmR1] gi|300072506|gb|ADJ61905.1| ribonucleoside reductase (large chain) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 994 Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/901 (60%), Positives = 684/901 (75%), Gaps = 11/901 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKIS A+ KAF+AV G + S RV+++++ LT V+ L++ + Sbjct: 41 RIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVRRQPT 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q + +AP+L + Sbjct: 101 GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERAQQGAATKTEVVAPQLHVT- 159 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +DG + + ++ AC GL++ V + +L+ET KN+YDG+ +L + I ++R Sbjct: 160 EDGQSRPLDINEVRSLIAAACVGLEEHVDGEAILAETVKNLYDGVPVEELYKSAILAARA 219 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EK+P Y++VT+R L+ +R+EV ++ + Y EYF +Y+++G++A L Sbjct: 220 LMEKDPAYSQVTSRLLMHTIRKEVFG------KEVAQADAPAEYLEYFPQYVKKGIEAEL 273 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + FDL LA LK ERD F Y+GLQ LYDRYFLHI G+RIEMPQAF+MRVAMGL Sbjct: 274 LDTKLAQFDLAKLAAALKPERDLQFGYIGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGL 333 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY+LLSSF FM STPTLFNSGT+ QLSSC+LTTV DDL GI+ A++ Sbjct: 334 ALNEIDRETRAIEFYDLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIK 393 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+LAK++GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 394 ENALLAKFAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 453 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP + Sbjct: 454 CAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDTP 513 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G+ FE AY YE +A RGE+K+F+K+ A LWRKML+MLFETGHPWITFKDPCN Sbjct: 514 DLHDKFGRAFEEAYTAYEAKAARGELKLFKKVQANDLWRKMLSMLFETGHPWITFKDPCN 573 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL AH N + D+ KL TIRTA Sbjct: 574 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTA 633 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ LH+ +PYAS +AVE AD SME Sbjct: 634 MRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKRVPYASMDAVEFADRSME 693 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 + ++A AS ELA+ERG Y+S++GSLWD+G+ P DS+ LLA+ R L + T L W Sbjct: 694 AVCYYAYMASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQERGGYLETDSTETLDWA 753 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FT +N +LV Sbjct: 754 ALRARIAEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLV 813 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWI Sbjct: 814 RDLKARGLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFEVDPSWLVEAASRRQKWI 873 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ SGK+LD Y+ AWL GLKTTYYLR+ AT EKST + G LNAV Sbjct: 874 DQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRA--GALNAVA 931 Query: 928 V 928 V Sbjct: 932 V 932 >gi|171057073|ref|YP_001789422.1| ribonucleotide-diphosphate reductase subunit alpha [Leptothrix cholodnii SP-6] gi|170774518|gb|ACB32657.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptothrix cholodnii SP-6] Length = 958 Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/939 (58%), Positives = 693/939 (73%), Gaps = 24/939 (2%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 G Q+I+RNG V +F+P KI+ A+MKAF+AV G + S V++ + LTE V L++ Sbjct: 32 GYQIIRRNGAVVAFEPHKITVALMKAFLAVHGTHGAASASVRETVDGLTEAVVRALMRSR 91 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S HIEDIQDQVE LM+ GHH + R YVLYRE R+ RA+Q AP+A + + Sbjct: 92 PSGGSFHIEDIQDQVELGLMRGGHHDVARAYVLYRERRTQERASQGR----APVAAEPAV 147 Query: 148 MMDD-GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 M+ D G + + RL ++E AC+ L + VL+ET +N+YDG+S ++ A I + Sbjct: 148 MVTDRGQRVPLDMARLAGLIEAACADLGPEAIGAPVLAETRRNLYDGVSIDEVYKASILA 207 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +RTLIEK+P+Y++VTAR L+ +RR+VL ++ T EM Y +YF +I++GV Sbjct: 208 ARTLIEKDPSYSRVTARLLMHTIRRDVLG------EEVTQAEMAARYADYFPAFIKKGVD 261 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 A LL E M FDL L LK ERD F+YLGLQ LYDRYFLHI RIEMPQAFFMRVA Sbjct: 262 AELLDERMAQFDLARLGAALKAERDLNFDYLGLQTLYDRYFLHIRKQRIEMPQAFFMRVA 321 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 MGLAL E ++E RA+EFY +LS+F FM STPTLFN+GTR QLSSC+LTTVPDDL GI+ Sbjct: 322 MGLALNEIDREARAIEFYEVLSAFDFMSSTPTLFNAGTRRSQLSSCYLTTVPDDLEGIYD 381 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRK Sbjct: 382 AIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRK 441 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 442 GAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPA 501 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 DLHDL+G FE AY YE +ADRGEI F+++ AV LWRK+L+MLFETGHPWITFKD Sbjct: 502 NCPDLHDLFGTAFEAAYTAYEARADRGEITFFKRVRAVDLWRKILSMLFETGHPWITFKD 561 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 CN+RSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL H + + D KL T+ Sbjct: 562 ACNVRSPQQHVGVVHSSNLCTEITLNTNAGEIAVCNLGSVNLAQHVKDGEVDQAKLCRTV 621 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ AL+ L +PYAS EAVE AD Sbjct: 622 TTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRVPYASNEAVEFADR 681 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRL 744 SME + +HA AS ELA ERG Y++++GSLWD+G+ PIDSI LLAE R L ++ + L Sbjct: 682 SMEAVCYHAYWASTELAAERGRYATYRGSLWDRGILPIDSIALLAEQRGGYLDVDTRTTL 741 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD L+ R+ GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+SG+FTVVN Sbjct: 742 DWDALRARIAQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVNE 801 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK LWD+ M+ DLK+ DGS+ I+R+P++LK+++ATAFE++ WL+E+A+RRQ Sbjct: 802 YLVRDLKALGLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWLVEAAARRQ 861 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT EKST+K G +N Sbjct: 862 KWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMGATHAEKSTVKA--GSMN 919 Query: 925 AVPVTDPNSSTHSLGIPSS---------CTSDTECEVCQ 954 AV S++ + S+ D CE CQ Sbjct: 920 AVSNGAHGSASEPAAVSSNEPATDVKFCAIDDPSCEACQ 958 >gi|70731822|ref|YP_261564.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas fluorescens Pf-5] gi|68346121|gb|AAY93727.1| ribonucleoside-diphosphate reductase, alpha chain [Pseudomonas fluorescens Pf-5] Length = 963 Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/936 (58%), Positives = 698/936 (74%), Gaps = 14/936 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA +S S+ P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERATRSTSEEPVQAHPSIRIT 151 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL++V ++ ET KN+YDG++ D+ TAL+ ++RT Sbjct: 152 RTDGSFAPLDMGRLNTIVSEACEGLEEVDGDLIQRETLKNLYDGVALKDVNTALVMTART 211 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + + + ATHHEM LY + Y+ +G++ L Sbjct: 212 LVEREPNYSFVTARLLMDTLRAEGLGFL-EVAESATHHEMAELYAKALPAYVAKGIEFEL 270 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 271 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 330 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E ++E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+GA+ Sbjct: 331 AIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIH 390 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 391 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 450 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 451 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVP 510 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL GK FE YE YE + +IK+F+ + A LWRKML+MLFETGHPW+TFKDPCN Sbjct: 511 DLHDLTGKAFEERYEYYEALTEYNKIKLFKTVQAKDLWRKMLSMLFETGHPWLTFKDPCN 570 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D KL T+ TA Sbjct: 571 LRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTA 630 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HI Y S AVE AD+SME Sbjct: 631 VRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADKSME 690 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R + + ++ L W Sbjct: 691 AVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNESLDW 750 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +L Sbjct: 751 APVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYL 809 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK R LWD MI+DLKY+DGS+ IERIP +LK+++ATAFE++ W++++ASRRQKW Sbjct: 810 VRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKW 869 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV Sbjct: 870 IDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNAV 927 Query: 927 PVTDPNSSTHSL-------GIPSSCTSD-TECEVCQ 954 + L +P +C D +CE CQ Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963 >gi|170695323|ref|ZP_02886469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia graminis C4D1M] gi|170139723|gb|EDT07905.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia graminis C4D1M] Length = 1001 Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/903 (60%), Positives = 684/903 (75%), Gaps = 19/903 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ R H + A P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDEQVAGSTPGLTVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E AC+ L D VS++ +++ET KN+YDG+ S + + I ++RT Sbjct: 155 DNGVSRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ GV+A L Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQAEMGERYAEYFPQFIKRGVQAEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+K+ A LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKVPAAQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS EAV+ A Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELAQERG YSS++GSLWD+G+ P DS+ LLA+ R + ++ + Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLADARGGYVEVDSSE 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W EL++R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 749 SMDWTELRQRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926 Query: 923 LNA 925 LNA Sbjct: 927 LNA 929 >gi|83719828|ref|YP_441700.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis E264] gi|257137869|ref|ZP_05586131.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis E264] gi|83653653|gb|ABC37716.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia thailandensis E264] Length = 995 Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/908 (60%), Positives = 689/908 (75%), Gaps = 17/908 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIM 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R A + ++P + + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESPTGGSINVT 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 159 -DNGVMRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSAILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+++KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVPVT 929 LNAVP + Sbjct: 930 ALNAVPTS 937 >gi|330504345|ref|YP_004381214.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas mendocina NK-01] gi|328918631|gb|AEB59462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas mendocina NK-01] Length = 968 Score = 1149 bits (2973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/901 (60%), Positives = 692/901 (76%), Gaps = 8/901 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YRE ++ R A + S+ P P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQASKRKASAGSEIAQP-HPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G + + RL+ I+ EAC GL +V ++ ET KN+YDG++E D+ TAL+ ++RT Sbjct: 151 NAAGEVQPLDMGRLQTIIREACEGLAEVDGSLIERETLKNLYDGVAEKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ +R E L+ + ATHHEM LY + Y+E+GV+ L Sbjct: 211 LVEREPNYSYVTARLLMDNIRAEALSFL-SIAASATHHEMADLYAKALPAYVEKGVEFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LDAKLKTFDLEKLGAAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGL 329 Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 A++E + +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+GA+ Sbjct: 330 AIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAI 389 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 390 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 449 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSP EV Sbjct: 450 VCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSEV 509 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK FE YE YE + G+IK+++ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 PDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS+NL+ H + + D +KL T++T Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIVDGKLDIEKLGRTVKT 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++++A+ SN HR +GLGLMGFQ AL+L HI Y S A+E AD+SM Sbjct: 630 AVRMLDNVIDINYYSVDQARNSNLKHRPVGLGLMGFQDALYLQHIAYGSDAAIEFADKSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E IS++AI AS +LA ERG+YS+F+GSLW +G+ P+DS LL E R + + ++ + L Sbjct: 690 EAISYYAIQASCDLADERGSYSTFEGSLWSKGILPLDSQQLLIEARGQKYIDVDLSESLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W +++RVK G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPIRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK R LWD M++DLKY+DGS+ IERIP DLK ++ATAFE++ W++++ASRRQK Sbjct: 809 LVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNA 926 Query: 926 V 926 V Sbjct: 927 V 927 >gi|167618619|ref|ZP_02387250.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis Bt4] Length = 953 Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/906 (60%), Positives = 688/906 (75%), Gaps = 17/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIM 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R A + ++P + + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESPTGGSINVT 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 159 -DNGVMRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSAILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+++KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVP 927 LNAVP Sbjct: 930 ALNAVP 935 >gi|77460467|ref|YP_349974.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas fluorescens Pf0-1] gi|77384470|gb|ABA75983.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas fluorescens Pf0-1] Length = 964 Score = 1149 bits (2971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/953 (58%), Positives = 705/953 (73%), Gaps = 18/953 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 19 DSNSDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ RS RA + Sbjct: 76 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDARSKERATR 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + +++ P ++I DG+L + RL IV EAC GL +V ++ ET KN+YDG Sbjct: 136 TTAEAPVQAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLAEVDGDLIQRETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + ATHHEM LY Sbjct: 196 VALNDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVAESATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+ +G++ LL+ + FDL L + +ERD F YLGLQ LYDRYF+H +G Sbjct: 255 AKALPAYVAKGIEFELLNPVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLT 551 V + WTLFSP EV DLHDL GK FE YE YE + G+IK+F+ I A LWRKML+ Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 554 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 555 MLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI 614 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + + D KL TI AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L H Sbjct: 615 VDGKLDTAKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQH 674 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 IPY S AVE AD+SME +S++AI AS +LA ERG+Y +F+GSLW +GV P+DS +L E Sbjct: 675 IPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGVLPLDSQQILIE 734 Query: 732 VRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + + ++ T L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNL Sbjct: 735 ARGQKYIDVDLTESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNL 793 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 YVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK+++ATAF Sbjct: 794 YVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAF 853 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 E+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +AT Sbjct: 854 EVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAAT 913 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSL-------GIPSSCTSD-TECEVCQ 954 S EKST+ GKLNAV + L +P +C D +CE CQ Sbjct: 914 STEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964 >gi|167895963|ref|ZP_02483365.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 7894] Length = 995 Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/909 (60%), Positives = 690/909 (75%), Gaps = 19/909 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER--SDVRAAQSHSKSDAPIAPKLKI 147 HIEDIQDQVE +LM+ G H + R YVLYRE+R V A ++ + +P A + + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGETEAAEASP-AGGINV 157 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSS 206 D+G + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++ Sbjct: 158 T-DNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAA 216 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RT+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 217 RTMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEA 270 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAM Sbjct: 271 ELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAM 330 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ A Sbjct: 331 GLALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEA 390 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 391 LKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 450 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 451 AVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPST 510 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDP Sbjct: 511 CPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDP 570 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621 CN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 571 CNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKL 630 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 631 KRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVE 690 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ Sbjct: 691 FADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDT 750 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 ++ L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FT Sbjct: 751 SATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 810 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+A Sbjct: 811 VVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAA 870 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ Sbjct: 871 SRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AH 928 Query: 921 GKLNAVPVT 929 G LNAVP + Sbjct: 929 GALNAVPTS 937 >gi|167580511|ref|ZP_02373385.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis TXDOH] Length = 950 Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/906 (60%), Positives = 688/906 (75%), Gaps = 17/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIM 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R A + ++P + + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESPTGGSINVT 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 159 -DNGVMRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSAILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+++KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL P+AS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVP 927 LNAVP Sbjct: 930 ALNAVP 935 >gi|312795098|ref|YP_004028020.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia rhizoxinica HKI 454] gi|312166873|emb|CBW73876.1| Ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1) [Burkholderia rhizoxinica HKI 454] Length = 1046 Score = 1148 bits (2969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/926 (59%), Positives = 694/926 (74%), Gaps = 21/926 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT+ V L++ + Sbjct: 95 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRESVETLTQAVVRALVRSRPN 154 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM++G H + R YVLYRE+R+ RA H + P L + Sbjct: 155 GGTFHIEDIQDQVELALMRAGEHNVARAYVLYREKRAAERA---HEVAQQPAQGGLNVN- 210 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + + L ++ AC GL + VS++ +++ET KN+YDG+ S + + I ++RT Sbjct: 211 DNGIVRPLDLAALRNVITAACDGLGEAVSAEPIVAETVKNLYDGVPLSQVYDSAILAART 270 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEKEP Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV+A L Sbjct: 271 MIEKEPAYSQVTARLLLHTIRREILG------EEVLQSEMGARYAEYFPQFLKRGVEAEL 324 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E ++ FDL L + L RD F YLGLQ LYDRYFLH++G RIEMPQAFFMRVAMGL Sbjct: 325 LDEKLLQFDLKKLGDALDASRDLKFGYLGLQTLYDRYFLHVDGQRIEMPQAFFMRVAMGL 384 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFYN+LS+F FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 385 ALNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLEGIYEALK 444 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 445 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 504 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 505 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEGGDWTLFSPSSCP 564 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE +A RGE+K+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 565 DLHDKFGAEFEQAYVAYEEKAARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCX 624 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 625 VRSPQQHVGVVHSSNLCTEITLNTSDNEIAVCNLGSVNLVAHMKQGADXGYVLDHDKLKR 684 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS +AVE A Sbjct: 685 TISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQQAVEFA 744 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME I ++A AS ELA ERG YSS++GSLWD+G+ P D++ LLA+ R + ++ + Sbjct: 745 DRSMEAICYYAYWASTELASERGRYSSYRGSLWDRGILPQDTLKLLADSRGGYVEVDSSE 804 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W L++R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 805 TMDWAALRERIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 864 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL++ +ATAFE+DP WL+E+A+R Sbjct: 865 NEYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPADLRETYATAFEVDPKWLVEAAAR 924 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 925 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTIAATHVEKSTV--AHGA 982 Query: 923 LNAVPVTDPN-SSTHSL-GIPSSCTS 946 LNAVP +D + H G+ S T+ Sbjct: 983 LNAVPSSDGGVGAMHGAGGVSGSATA 1008 >gi|186477387|ref|YP_001858857.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia phymatum STM815] gi|184193846|gb|ACC71811.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia phymatum STM815] Length = 997 Score = 1148 bits (2969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/936 (58%), Positives = 695/936 (74%), Gaps = 26/936 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P + + +G + P Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 18 RPVEGLAQGADALAPQTGY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 71 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM++G H + R YVLY Sbjct: 72 GAASARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRTGEHNVARAYVLY 131 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 RE+R+ R + DAP+A L + D+G + L ++E AC+ L D V+++ Sbjct: 132 REKRTQERGHEV----DAPVASGLNVT-DNGVTRPLDMAALRGLIESACANLGDAVNAEP 186 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VT+R LL +RRE+L Sbjct: 187 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREILE------ 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ T EM Y EYF +I+ GV A LL + ++ FDL L L RD F YLGLQ Sbjct: 241 EEVTQAEMAGRYAEYFPLFIKRGVNAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQT 300 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLHI+G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN Sbjct: 301 LYDRYFLHIDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 360 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK Sbjct: 361 SGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 420 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 421 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 480 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI Sbjct: 481 TANWIPDLFMKRVLEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 540 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVC Sbjct: 541 PAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 600 Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR Sbjct: 601 NLGSVNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRP 660 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+MGFQ LH+L PYAS EAVE AD SME + ++A AS ELA+ERG YS+++GSL Sbjct: 661 VGMGIMGFQDCLHVLRTPYASQEAVEFADRSMEAVCYYAYWASTELAEERGRYSTYRGSL 720 Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ LLA+ R + ++ + + W L+ R+ T GMRNSNC+AIAPTATI+N Sbjct: 721 WDRGILPQDTLKLLADARGGYVEVDSSESMDWASLRSRIATHGMRNSNCVAIAPTATISN 780 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I Sbjct: 781 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLSRI 840 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +R+P DL+ I+ATAFE+D WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL Sbjct: 841 DRVPADLRAIYATAFEVDATWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 900 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 GLKTTYYLR+ +AT VEKST+ G LNAVP D Sbjct: 901 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSGD 934 >gi|187925408|ref|YP_001897050.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia phytofirmans PsJN] gi|187716602|gb|ACD17826.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia phytofirmans PsJN] Length = 1001 Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/904 (60%), Positives = 682/904 (75%), Gaps = 19/904 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ R H P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDDQIVANTPGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E ACS L D VS+ +++ET KN+YDG+ S + + I ++RT Sbjct: 155 DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAETVKNLYDGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ GV+A L Sbjct: 215 MIEKDPAYSQVTARILLHTIRREILK------EEVTQTEMGERYAEYFPQFIKRGVQAEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL+G +FE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDLFGADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS EAV+ A Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELAQERG YSS++GSLWD+G+ P DS+ LLA+ R + ++ + Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLADARGGYVEVDSSE 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W EL+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 749 SMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926 Query: 923 LNAV 926 LNAV Sbjct: 927 LNAV 930 >gi|167574514|ref|ZP_02367388.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia oklahomensis C6786] Length = 944 Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/912 (59%), Positives = 684/912 (75%), Gaps = 15/912 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALLRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAADVETSAAGGINVT 158 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L ++ AC GL D VS + ++SET KN+YDG+ + + + I ++RT Sbjct: 159 DNGVTRPLDMSALHALIVSACEGLGDAVSPEPIVSETVKNLYDGVPMTQVYDSAILAART 218 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A L Sbjct: 219 MIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSMRYAEYFPQFLKRGVEAEL 272 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL Sbjct: 273 LDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 332 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 333 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 392 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 393 DNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCP 512 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 513 DLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDQEKLKR 632 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS AVE A Sbjct: 633 TVGVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFA 692 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ ++ Sbjct: 693 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSA 752 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 753 TLDWPVLRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+R LWDE M++DLKY DG + I+R+P DL+ I+ATAFE+DP WL+E+ASR Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPKWLVEAASR 872 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930 Query: 923 LNAVPVTDPNSS 934 LNAVP + +S Sbjct: 931 LNAVPTSGGSSG 942 >gi|113869189|ref|YP_727678.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia eutropha H16] gi|113527965|emb|CAJ94310.1| Ribonucleoside-diphosphate reductase alpha subunit [Ralstonia eutropha H16] Length = 977 Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/906 (60%), Positives = 696/906 (76%), Gaps = 18/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++I++ LT+ V L++ + Sbjct: 37 KIIRRNGAVVAFEPSKIAVAMTKAFLAVNGGQGAASARVREIVEQLTDNVVRALVRSRPN 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK-LKIM 148 +HIED+QD VE +LM+SG H++ R YVLYRE+R D RA Q+++++ A + + + Sbjct: 97 GGAIHIEDVQDHVELALMRSGEHEVARAYVLYREKRKDERA-QANAQAVARVQEGGISVN 155 Query: 149 MDDGTLIS-FNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + DG + + L +++ ACSGL + VS++ +L ET KN+YDG+ + + + I ++ Sbjct: 156 VTDGGVTHVLDIAALHDLIDNACSGLGNAVSAEPILKETLKNLYDGVPMTQVYDSAILAA 215 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTLIEK+P+Y++VTAR LL +R+E+L T + T EM Y EYF ++I G++A Sbjct: 216 RTLIEKDPDYSQVTARILLHTIRKEILGT------EVTQAEMSTRYAEYFPKFIARGIEA 269 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL E + FDL L L RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAM Sbjct: 270 ELLDEQLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAM 329 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ A Sbjct: 330 GLALNEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEA 389 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 390 LKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 449 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 450 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPAT 509 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHD GKEFE AY YE +A GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDP Sbjct: 510 CPDLHDKVGKEFEKAYLGYEAKAASGELKLFKKLPALQLWRKMLGMLFETGHPWITFKDP 569 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621 CNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH A D+ KL Sbjct: 570 CNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMAKQADGTYALDHAKL 629 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 T+RTA+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ LH+L PY+S AV+ Sbjct: 630 QKTVRTAMRMLDNVIDINYYAVDKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDAAVK 689 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R L ++ Sbjct: 690 FADTSMEAVCYYAYHASTELAEERGRYSSYEGSLWDRGILPQDSLKLLAEERGGYLDVDM 749 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 ++ + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FT Sbjct: 750 SATMDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 809 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +LV +LK+R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE++P WL+E+A Sbjct: 810 VVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAA 869 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR+ +AT VEKST+ Sbjct: 870 SRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTMAATHVEKSTVS--R 927 Query: 921 GKLNAV 926 G LNAV Sbjct: 928 GSLNAV 933 >gi|329902474|ref|ZP_08273119.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548766|gb|EGF33403.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 969 Score = 1147 bits (2966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/943 (58%), Positives = 694/943 (73%), Gaps = 30/943 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++++RNG V +F+PSKIS A+ KAF+AV G + S RV+++++ LT V L++ + Sbjct: 39 RILRRNGAVVAFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTATVVAALVRRQPA 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q ++ P A +++ + Sbjct: 99 GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERALQQAAR---PAAASVQLHV 155 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +DG + +++ +++ AC GL+ V + + +ET KN+YDG+ +L + I ++R Sbjct: 156 TEDGQRRLLDMQQVHKLIDAACIGLEKHVDANAIFAETVKNLYDGVPVEELHKSAILAAR 215 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+EK+P Y VTAR L+ +R+EV ++ + Q Y EYF ++I G+ A Sbjct: 216 ALMEKDPAYTTVTARILMHVIRKEVFG------KEVAQADAQAHYLEYFPQFIHNGIAAE 269 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + FDL LA L +RD F Y+GLQ LYDRYFLHI RIEMPQAF+MRVAMG Sbjct: 270 LLDAKLAGFDLDRLAKALVPDRDLQFGYIGLQTLYDRYFLHIRDIRIEMPQAFYMRVAMG 329 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E+RA+EFYNLLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ A+ Sbjct: 330 LALNEAKREERAIEFYNLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLEGIYDAI 389 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+LAKY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 390 KDNALLAKYAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 449 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV + W LFSP EV Sbjct: 450 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGSWMLFSPSEV 509 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD G+ FE AY YE A RGE+++F+K+ A+ LWRKML+MLFETGHPWITFKDPC Sbjct: 510 PDLHDKVGRAFEAAYTGYEAAAARGELRMFKKVEALDLWRKMLSMLFETGHPWITFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 NIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL AH + Q D+ KL TIR Sbjct: 570 NIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHMKDGQLDHVKLQKTIRI 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ LH++ +PYAS EAV AD+SM Sbjct: 630 AMRMLDNVIDINYYAVQKARDSNMRHRPVGLGIMGFQDCLHIMRVPYASAEAVSFADKSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746 E + ++A +AS ELA+ERGAYSS+KGSLWD+G+ P DS+ LL E R L + + + W Sbjct: 690 EAVCYYAYTASTELAEERGAYSSYKGSLWDRGILPQDSLKLLMEERGGYLETDLSEAMDW 749 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+ R+K GMRNSNC+AIAPTATI+NI GV+ I+P+YQNLYVKSN+SG+FT +N +L Sbjct: 750 TPLRARIKQFGMRNSNCVAIAPTATISNIIGVAACIEPTYQNLYVKSNLSGEFTEINEYL 809 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK RDLWDE MISDLKY DGS+ I+R+P +L+ I+ATAFEI+P WL+E+ASRRQKW Sbjct: 810 VRDLKARDLWDEVMISDLKYFDGSLARIDRVPQELRAIYATAFEIEPSWLVEAASRRQKW 869 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT EKST K G LNAV Sbjct: 870 IDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSK--TGSLNAV 927 Query: 927 PVTDPNSSTHSLGIPSSCTSDT---------------ECEVCQ 954 D SS +L ++ +D ECE CQ Sbjct: 928 S-ADGVSSGVALSAYTTAGADVDGPSCVLRPGDDGFEECEACQ 969 >gi|167564162|ref|ZP_02357078.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia oklahomensis EO147] Length = 953 Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/905 (60%), Positives = 681/905 (75%), Gaps = 15/905 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALLRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAADVETSAAGGINVT 158 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L ++ AC GL D VS + ++SET KN+YDG+ + + + I ++RT Sbjct: 159 DNGVTRPLDMSALHALIVSACEGLGDAVSPEPIVSETVKNLYDGVPMTQVYDSAILAART 218 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A L Sbjct: 219 MIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSMRYAEYFPQFLKRGVEAEL 272 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL Sbjct: 273 LDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 332 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 333 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 392 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 393 DNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCP 512 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 513 DLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDQEKLKR 632 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS AVE A Sbjct: 633 TVGVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFA 692 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ ++ Sbjct: 693 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSA 752 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 753 TLDWPVLRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+R LWDE M++DLKY DG + I+R+P DL+ I+ATAFE+DP WL+E+ASR Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPKWLVEAASR 872 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930 Query: 923 LNAVP 927 LNAVP Sbjct: 931 LNAVP 935 >gi|309783063|ref|ZP_07677782.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp. 5_7_47FAA] gi|308918171|gb|EFP63849.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp. 5_7_47FAA] Length = 994 Score = 1145 bits (2963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/904 (61%), Positives = 678/904 (75%), Gaps = 17/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V SF+PSKI+ A+ KAF+AV G + S RV++++ T+ V LL+ + Sbjct: 41 KIIRRNGAVVSFEPSKIAVAMTKAFLAVNGGQGAASARVRELVDQQTQNVVRALLRSRPN 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE R+ RA Q+ P L + Sbjct: 101 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQQPAFIGLNVT- 158 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC GL + V + +L ET KN+Y+G+ + + + I +SRT Sbjct: 159 DGGISRPLDMAALRNVIVSACEGLGEAVDPEPILKETVKNLYEGVPMTQVYDSAILASRT 218 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++VTAR LL +RRE+L ++ T EM Y +YF ++IE G+ A L Sbjct: 219 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYVDYFPQFIERGINAEL 272 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + + FDL L L RDF F YLGLQ LYDRYFLHIN +RIEMPQAFFMRVAMGL Sbjct: 273 LDDKLAQFDLARLGAALDASRDFQFNYLGLQTLYDRYFLHINETRIEMPQAFFMRVAMGL 332 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 333 ALNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALK 392 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 393 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 453 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 512 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD GK FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 513 DLHDKVGKAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 572 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D++KL Sbjct: 573 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQPDGSVVLDHEKLKK 632 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTA+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ ALH+L +PYAS AV+ A Sbjct: 633 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASEAAVQFA 692 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLAE R L + +S Sbjct: 693 DTSMEAVCYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGGYLEADMSS 752 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 753 TMDWDSLRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 812 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 813 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 872 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 873 RQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 930 Query: 923 LNAV 926 LNAV Sbjct: 931 LNAV 934 >gi|167920555|ref|ZP_02507646.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei BCC215] Length = 952 Score = 1145 bits (2963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/906 (60%), Positives = 686/906 (75%), Gaps = 17/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A +P I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + +HA AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYHAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVP 927 LNAVP Sbjct: 930 ALNAVP 935 >gi|312962585|ref|ZP_07777075.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6] gi|311283165|gb|EFQ61756.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6] Length = 963 Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/936 (58%), Positives = 695/936 (74%), Gaps = 14/936 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVTATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA + + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVHAPAAEAVQAHPSIRIT 151 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL I+ EAC GL++V ++ ET KN+YDG++ +D+ TAL+ ++RT Sbjct: 152 LADGSFAPLDLGRLNTIITEACEGLEEVDGDLIQRETLKNLYDGVALTDVNTALVMTART 211 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + YI +G++ L Sbjct: 212 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYIAKGIEFEL 270 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 271 LNPVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGL 330 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 331 AIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 390 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 391 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 450 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 451 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSEVP 510 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK FE YE YE A G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 511 DLHDLTGKAFEERYEYYEALAQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 570 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D KL T+ T Sbjct: 571 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNT 630 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HIPY S AVE AD+SM Sbjct: 631 AVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSM 690 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R + + ++ L Sbjct: 691 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLD 750 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 751 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 809 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK R LWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 810 LVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 869 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 870 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNA 927 Query: 926 VPVTDPNSST------HSLGIPSSCTSD-TECEVCQ 954 V + + +P +C D +CE CQ Sbjct: 928 VSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963 >gi|229592128|ref|YP_002874247.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas fluorescens SBW25] gi|229363994|emb|CAY51541.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas fluorescens SBW25] Length = 964 Score = 1145 bits (2961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/937 (59%), Positives = 699/937 (74%), Gaps = 15/937 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA-PKLKI 147 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ ++ A A P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRTPAEEAAVQAHPSIRI 151 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + DGT + RL I+ EAC GL++V ++ ET KN+YDG++ +D+ TAL+ ++R Sbjct: 152 TLADGTFAPLDLGRLNTIITEACEGLEEVDGDLIQRETLKNLYDGVALTDVNTALVMTAR 211 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TL+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + YI +G++ Sbjct: 212 TLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYIAKGIEFE 270 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL+ + FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMG Sbjct: 271 LLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMG 330 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA++E KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 331 LAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAI 390 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 391 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 450 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 451 VCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEV 510 Query: 508 SDLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDL GK FE YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDP Sbjct: 511 PDLHDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDP 570 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D KL T+ Sbjct: 571 CNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVN 630 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HIPY S AVE AD+S Sbjct: 631 TAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKS 690 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744 ME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R + + ++ L Sbjct: 691 MEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESL 750 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N Sbjct: 751 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 809 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQ Sbjct: 810 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 869 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLN Sbjct: 870 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLN 927 Query: 925 AVPVTDPNSST------HSLGIPSSCTSD-TECEVCQ 954 AV + + +P +C D +CE CQ Sbjct: 928 AVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964 >gi|241664220|ref|YP_002982580.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia pickettii 12D] gi|240866247|gb|ACS63908.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12D] Length = 994 Score = 1145 bits (2961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/904 (61%), Positives = 678/904 (75%), Gaps = 17/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V SF+PSKI+ A+ KAF+AV G + S RV++++ T+ V LL+ + Sbjct: 41 KIIRRNGAVVSFEPSKIAVAMTKAFLAVNGGQGAASARVRELVDQQTQNVVRALLRSRPN 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE R+ RA Q+ P L + Sbjct: 101 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQQPAFIGLNVT- 158 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC GL D V + +L ET KN+Y+G+ + + + I +SRT Sbjct: 159 DGGISRPLDMVALRNVIVSACEGLGDAVDPEPILKETVKNLYEGVPMTQVYDSAILASRT 218 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++VTAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 219 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYVDYFPQFIKRGINAEL 272 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + + FDL L L RDF F YLGLQ LYDRYFLHIN +RIEMPQAFFMRVAMGL Sbjct: 273 LDDKLAQFDLARLGAALDASRDFQFNYLGLQTLYDRYFLHINETRIEMPQAFFMRVAMGL 332 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 333 ALNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALK 392 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 393 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 453 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 512 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD GK FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 513 DLHDKVGKAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 572 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D++KL Sbjct: 573 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSVVLDHEKLKK 632 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTA+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ ALH+L +PYAS AV+ A Sbjct: 633 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASEAAVQFA 692 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLAE R L + +S Sbjct: 693 DTSMEAVCYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGGYLEADMSS 752 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 753 TMDWDSLRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 812 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 813 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 872 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 873 RQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 930 Query: 923 LNAV 926 LNAV Sbjct: 931 LNAV 934 >gi|330960619|gb|EGH60879.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. maculicola str. ES4326] Length = 970 Score = 1145 bits (2961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 697/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ ++ P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAGRA-TEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVAESATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + DFDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E ++++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|94312019|ref|YP_585229.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus metallidurans CH34] gi|93355871|gb|ABF09960.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus metallidurans CH34] Length = 979 Score = 1145 bits (2961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/906 (60%), Positives = 692/906 (76%), Gaps = 18/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V SF+P+KI+ A+ KAF+AV G + S RV++I++ LT+ V L++ + Sbjct: 39 KLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI--APKLKI 147 HIED+QD VE +LM+SG H++ R YVLYRE+R+ RA Q+++++ A + A Sbjct: 99 GGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERA-QANAQAVARVQEAGVSFN 157 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + D+G + L +++ ACSGL + VS++ +L ET KN+YDG+ + + + I ++ Sbjct: 158 VTDNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAILAA 217 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTLIEK+P Y++VTAR LL +R+E+L + T EM Y EYF ++I G++A Sbjct: 218 RTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARGIEA 271 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL E + +DL L L RDF F YLGLQ LYDRYFLH++ RIEMPQAFFMRVAM Sbjct: 272 ELLDEKLATYDLARLGAALDASRDFQFNYLGLQTLYDRYFLHVDEVRIEMPQAFFMRVAM 331 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL+E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ A Sbjct: 332 GLALEEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEA 391 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 392 LKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 451 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 452 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPAS 511 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHD GK FE AY YE +A GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDP Sbjct: 512 CPDLHDKVGKAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDP 571 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKL 621 CNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+ KL Sbjct: 572 CNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDHAKL 631 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 TIRTA+R+LDNVIDIN + +EKA+ SN HR +G+G+MGFQ LH+L PYAS AV+ Sbjct: 632 QKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAAVK 691 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740 AD SME + ++A AS ELA+ERG YS+++GSLWD+G+ P DS+ LLAE R L ++ Sbjct: 692 FADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLDVDL 751 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +S + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FT Sbjct: 752 SSTMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 811 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +LV +LK+R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE++P WL+E+A Sbjct: 812 VVNDYLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLVEAA 871 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT VEKST++ Sbjct: 872 SRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVQ--R 929 Query: 921 GKLNAV 926 G LNAV Sbjct: 930 GSLNAV 935 >gi|330880141|gb|EGH14290.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966560|gb|EGH66820.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. actinidiae str. M302091] Length = 970 Score = 1144 bits (2960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL TI Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS +L E R + + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|296160507|ref|ZP_06843323.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. Ch1-1] gi|295889256|gb|EFG69058.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. Ch1-1] Length = 1001 Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/902 (60%), Positives = 679/902 (75%), Gaps = 19/902 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ R H P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDDQIVANTPGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E ACS L D VS+ +++ET KN+YDG+ S + + I ++RT Sbjct: 155 DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAETVKNLYDGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ GV+A L Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQTEMGERYAEYFPQFIKRGVQAEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LS+F FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKFGAEFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS EAV+ A Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELAQERG YSS++GSLWD+G+ P DS+ LLAE R + ++ + Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W EL+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 749 SMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926 Query: 923 LN 924 LN Sbjct: 927 LN 928 >gi|167904348|ref|ZP_02491553.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei NCTC 13177] Length = 956 Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/908 (60%), Positives = 687/908 (75%), Gaps = 17/908 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A +P I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 158 TDNGVTRTLDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVPVT 929 LNAVP + Sbjct: 930 ALNAVPTS 937 >gi|28868877|ref|NP_791496.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato str. DC3000] gi|28852116|gb|AAO55191.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|331016766|gb|EGH96822.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 970 Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAGRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL TI Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS +L E R + + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|53720600|ref|YP_109586.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei K96243] gi|53726101|ref|YP_104056.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei ATCC 23344] gi|67643594|ref|ZP_00442339.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Burkholderia mallei GB8 horse 4] gi|76810342|ref|YP_334882.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 1710b] gi|121601276|ref|YP_991781.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei SAVP1] gi|124384186|ref|YP_001027274.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei NCTC 10229] gi|126439753|ref|YP_001060485.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 668] gi|126448585|ref|YP_001082789.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei NCTC 10247] gi|126454560|ref|YP_001067749.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 1106a] gi|134280283|ref|ZP_01766994.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 305] gi|166998594|ref|ZP_02264452.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei PRL-20] gi|167825889|ref|ZP_02457360.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 9] gi|217420768|ref|ZP_03452273.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 576] gi|226196789|ref|ZP_03792368.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|237813880|ref|YP_002898331.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Burkholderia pseudomallei MSHR346] gi|242315545|ref|ZP_04814561.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1106b] gi|254178878|ref|ZP_04885532.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei ATCC 10399] gi|254180585|ref|ZP_04887183.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1655] gi|254190978|ref|ZP_04897484.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|254199123|ref|ZP_04905538.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei S13] gi|254202775|ref|ZP_04909138.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei FMH] gi|254208117|ref|ZP_04914467.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei JHU] gi|254257988|ref|ZP_04949042.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1710a] gi|254299328|ref|ZP_04966778.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 406e] gi|52211014|emb|CAH37002.1| putative ribonucleoside reductase [Burkholderia pseudomallei K96243] gi|52429524|gb|AAU50117.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei ATCC 23344] gi|76579795|gb|ABA49270.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1710b] gi|121230086|gb|ABM52604.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei SAVP1] gi|124292206|gb|ABN01475.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei NCTC 10229] gi|126219246|gb|ABN82752.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 668] gi|126228202|gb|ABN91742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1106a] gi|126241455|gb|ABO04548.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei NCTC 10247] gi|134248290|gb|EBA48373.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 305] gi|147747022|gb|EDK54099.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei FMH] gi|147752011|gb|EDK59078.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei JHU] gi|157809187|gb|EDO86357.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 406e] gi|157938652|gb|EDO94322.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|160694792|gb|EDP84800.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei ATCC 10399] gi|169656953|gb|EDS88350.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei S13] gi|184211124|gb|EDU08167.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1655] gi|217396180|gb|EEC36197.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 576] gi|225931049|gb|EEH27057.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|237505593|gb|ACQ97911.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Burkholderia pseudomallei MSHR346] gi|238524966|gb|EEP88396.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Burkholderia mallei GB8 horse 4] gi|242138784|gb|EES25186.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1106b] gi|243065277|gb|EES47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei PRL-20] gi|254216677|gb|EET06061.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1710a] Length = 995 Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/908 (60%), Positives = 687/908 (75%), Gaps = 17/908 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A +P I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVPVT 929 LNAVP + Sbjct: 930 ALNAVPTS 937 >gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate reductase subunit alpha [Janthinobacterium sp. Marseille] gi|151279943|gb|ABR88353.1| ribonucleoside-diphosphate reductase alpha chain [Janthinobacterium sp. Marseille] Length = 963 Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/900 (60%), Positives = 681/900 (75%), Gaps = 14/900 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKIS A+ KAF+AV G + S RV+++++ LT V L++ + Sbjct: 39 RIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTSNVVNALVRRQPA 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q +K P+A ++ + Sbjct: 99 GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERAQQQAAK---PVAETHQLHV 155 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +DG + ++ ++ AC GL+ V ++ +L ET KN+YDG+ +L + I ++R Sbjct: 156 TEDGQRRPLDMNQVRDLINAACIGLEKHVDAEAILHETVKNLYDGVPVEELHKSAILAAR 215 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+EK+P Y+ VTAR L+ +R+EV + + Y EYF ++I++G++A Sbjct: 216 ALMEKDPAYSTVTARLLMHTIRKEVFGL------EVAQADAPAQYLEYFPKFIKKGIEAE 269 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + FDL L + L ERD F YLGLQ LYDRYFLHI +RIEMPQAF+MRVAMG Sbjct: 270 LLDAKLGQFDLKKLGDALVPERDLQFGYLGLQTLYDRYFLHIRDTRIEMPQAFYMRVAMG 329 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E +E+RA+EFYNLLSSF FM STPTLFNSGT+ QLSSC+LTTV DDL GI+ A+ Sbjct: 330 LALNEINREERAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAI 389 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 390 KENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGA 449 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP + Sbjct: 450 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDA 509 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD GK FE AY YE +A RGE+K+F+KI A+ LWRKML+MLFETGHPWITFKDPC Sbjct: 510 PDLHDKVGKAFEAAYTGYEAKAARGELKLFKKIQALDLWRKMLSMLFETGHPWITFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 NIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+N+ AH + Q D+ KL T+RT Sbjct: 570 NIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNMPAHMKDGQLDHVKLQKTVRT 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ LH++ IPYAS EAV+ AD SM Sbjct: 630 AMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDCLHMMRIPYASDEAVQFADRSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746 E + ++A AS ELA+ERG YSS++GSLWD+G+ P DS+ LL E R L + T L W Sbjct: 690 EAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSLKLLQEERGGYLEADLTETLDW 749 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L++R+K GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FT +N +L Sbjct: 750 TPLRERIKQFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYL 809 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK R LWDE MISDLKY DGS+ I+RIP DL+ I++TAFE++P WL+E+ASRRQKW Sbjct: 810 VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYSTAFEVEPKWLVEAASRRQKW 869 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT EKST K G LNAV Sbjct: 870 IDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSK--TGALNAV 927 >gi|145588392|ref|YP_001154989.1| ribonucleotide-diphosphate reductase subunit alpha [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046798|gb|ABP33425.1| ribonucleoside-diphosphate reductase, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 993 Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/952 (58%), Positives = 703/952 (73%), Gaps = 36/952 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++ ++ LT V LL+ + Sbjct: 51 KIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALLRSRPN 110 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK----- 144 HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAAQ ++ A + Sbjct: 111 GGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVAQESQSAGQATESG 170 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 +K+ D+G + L ++E AC GL + + + +++ET KN+YDG+ + + + I Sbjct: 171 IKVT-DNGVEKWLDMAALRTVIEAACEGLGNHIDATPIITETIKNLYDGVPMAQVYDSAI 229 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +SRTLIEK+P +++VTAR L+ +R+E+L ++ +MQ Y YF +YI EG Sbjct: 230 LASRTLIEKDPAFSQVTARILMHVIRKEILG------KEVLQGDMQSEYGTYFAKYINEG 283 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + A LL M +FDL LA L RD F YLGLQ LYDRYFLHI RIEMPQAFFMR Sbjct: 284 ISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEMPQAFFMR 343 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T PQLSSC+LTTV DDL GI Sbjct: 344 VAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTVEDDLDGI 403 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGK Sbjct: 404 YEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGK 463 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV +N WTLFS Sbjct: 464 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMENGDWTLFS 523 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P DLHD YGK FE AY YE++ADRGE+K FR+I A LWRKML MLFETGHPWITF Sbjct: 524 PSNTPDLHDKYGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFETGHPWITF 583 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQ--FDY 618 KDPCNIRSPQQH+GVVHSSNLCTEITLN++ E AVCNLGS+NL AH AN + D+ Sbjct: 584 KDPCNIRSPQQHIGVVHSSNLCTEITLNTNETEIAVCNLGSVNLTAHMTTDANGKLVLDH 643 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL T+RTA+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LH+ IPYAS E Sbjct: 644 EKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQRIPYASEE 703 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737 AV+ AD SME + ++A AS ELA+ERG YS++ GSLWD+G+ P DS+ LLA+ R L Sbjct: 704 AVKFADSSMEAVCYYAYQASNELAEERGVYSTYTGSLWDRGILPQDSVALLAQERGGYLE 763 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ +S + W L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNL+VKSN+SG Sbjct: 764 VDNSSTMDWSGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLFVKSNLSG 823 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FTVVN +LV +LK R LWDE MI+DLKY DG++ I+RIP DL+ ++ATAFE++P WL+ Sbjct: 824 EFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFEVEPSWLV 883 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT VEKST+ Sbjct: 884 EAASRRQKWIDQAQSLNIYMGGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTV- 942 Query: 918 GVDGKLNAVPV------TDPNSSTHSLGIPSS---CTSDT------ECEVCQ 954 G+LN+V TD +++ + G+ + CT ECE CQ Sbjct: 943 -ASGQLNSVSSGGGVNGTDATAASAAGGVEADGPVCTMRPGDAGFEECEACQ 993 >gi|167912608|ref|ZP_02499699.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 112] Length = 953 Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/906 (60%), Positives = 686/906 (75%), Gaps = 17/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A +P I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVP 927 LNAVP Sbjct: 930 ALNAVP 935 >gi|167740268|ref|ZP_02413042.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 14] gi|167817488|ref|ZP_02449168.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 91] gi|167847375|ref|ZP_02472883.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei B7210] Length = 954 Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/906 (60%), Positives = 686/906 (75%), Gaps = 17/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A +P I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + L ++ AC GL D VS + +++ET KN+YDG+ + + + I ++R Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVP 927 LNAVP Sbjct: 930 ALNAVP 935 >gi|298487944|ref|ZP_07005983.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157495|gb|EFH98576.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330986741|gb|EGH84844.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 970 Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|167721299|ref|ZP_02404535.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei DM98] Length = 942 Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/913 (59%), Positives = 688/913 (75%), Gaps = 17/913 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A +P I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + + L ++ AC GL + VS + +++ET KN+YDG+ + + + I ++R Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGNAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929 Query: 922 KLNAVPVTDPNSS 934 LNAVP + S Sbjct: 930 ALNAVPTSGGTSG 942 >gi|213969510|ref|ZP_03397646.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. tomato T1] gi|301385966|ref|ZP_07234384.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato Max13] gi|302058709|ref|ZP_07250250.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato K40] gi|302134400|ref|ZP_07260390.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925606|gb|EEB59165.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. tomato T1] Length = 970 Score = 1143 bits (2956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAGRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGRAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL TI Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS +L E R + + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|320323422|gb|EFW79510.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. glycinea str. B076] gi|320327619|gb|EFW83631.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330876274|gb|EGH10423.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] Length = 970 Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|66046946|ref|YP_236787.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. syringae B728a] gi|63257653|gb|AAY38749.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv. syringae B728a] Length = 970 Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 696/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRT-PEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTAGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE+YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEHYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E ++++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|91785258|ref|YP_560464.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia xenovorans LB400] gi|91689212|gb|ABE32412.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans LB400] Length = 1001 Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/902 (60%), Positives = 677/902 (75%), Gaps = 19/902 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R+ R H P L + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDDQIVANTPGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L I+E ACS L D VS+ +++ET KN+YDG+ S + + I ++RT Sbjct: 155 DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAETVKNLYDGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++I+ GV+A L Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQTEMGERYAEYFPQFIKRGVQAEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LS+F FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS EAV A Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVRFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELAQERG YSS++GSLWD+G+ P DS+ LLAE R + ++ + Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W EL+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 749 SMDWTELRSRIAQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DG++ I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926 Query: 923 LN 924 LN Sbjct: 927 LN 928 >gi|330949819|gb|EGH50079.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae Cit 7] Length = 970 Score = 1142 bits (2954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|330974388|gb|EGH74454.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aceris str. M302273PT] Length = 953 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/901 (60%), Positives = 684/901 (75%), Gaps = 8/901 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRT-PEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVAAGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E ++++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 V 926 V Sbjct: 927 V 927 >gi|82703583|ref|YP_413149.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosospira multiformis ATCC 25196] gi|82411648|gb|ABB75757.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC 25196] Length = 956 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/960 (57%), Positives = 705/960 (73%), Gaps = 25/960 (2%) Query: 11 DEDAFPSLA-YPFPEKIKG-------VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 D+ P++A Y F G ++I+RNG V F+P+KIS A+ KAF+AVEG Sbjct: 6 DQTPRPAMAGYEFSSNPSGHDPRYSQYKIIRRNGSVAGFEPNKISIAMTKAFLAVEGSQG 65 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV++++ LTE V L++ S HIEDIQDQVE +LM+SG H + R YVLYR Sbjct: 66 AASARVREVVARLTEDVVNALMRRQPSGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 125 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIV 181 E+R+ RA Q + + L ++ +DG + ++ RL ++ C GL + V ++ Sbjct: 126 EDRARKRAQQKEAGAAEAAGSVLNVL-EDGRRVPLDTARLLALIGSCCEGLGEGVDPALI 184 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L T K++YDG+ ++ ++I S+R L+EKEP Y+ VTAR LL LR EVL + Sbjct: 185 LKATLKDLYDGVPMEEVRKSVILSARALLEKEPAYSYVTARLLLHSLRFEVLG------E 238 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + EM Y EYF +I+ G++A LL E + FDL LA L ERD F YLGLQ L Sbjct: 239 EIVQREMAGRYMEYFPAFIKRGIEAELLDERLAQFDLPRLAQALHAERDLKFGYLGLQTL 298 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI RIE+PQAFFMRVAMGLAL E ++E RA+EFY++LS+F FM STPTLFNS Sbjct: 299 YDRYFLHIQERRIELPQAFFMRVAMGLALNEIDREARAIEFYHVLSNFDFMSSTPTLFNS 358 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GTR QLSSC+LTTVPDDL GI+ ++ENA+LAKY+GGLGNDWT VR +G+HI GTNGKS Sbjct: 359 GTRRSQLSSCYLTTVPDDLDGIYEGIKENALLAKYAGGLGNDWTRVRAMGSHIKGTNGKS 418 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV +DTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 419 QGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNT 478 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A W+PDLFMKRV + WTLFSP +V DLH+ YGK FE AY YE + RGE+ +++ I Sbjct: 479 ATWVPDLFMKRVMEGGEWTLFSPSDVPDLHEKYGKAFEQAYLAYEDKVARGELDLYKTIP 538 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 AV LWRKML+MLFETGHPWITFKD CNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCN Sbjct: 539 AVQLWRKMLSMLFETGHPWITFKDACNIRSPQNHIGVVHSSNLCTEITLNTNDQEIAVCN 598 Query: 602 LGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 LGSINL AH + + D DKL T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+ Sbjct: 599 LGSINLAAHIDDGGKLDADKLKRTVSLAMRMLDNVIDINFYAVAKARNSNLRHRPVGLGI 658 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ LH + IPYAS EAVE AD +ME +++HA AS ELA+ERG Y+S++GSLWD+G+ Sbjct: 659 MGFQDCLHRMRIPYASDEAVEFADRTMEAMAYHAYWASTELAEERGRYASYRGSLWDRGI 718 Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P D++ LL E R + +R+S L W+ L++R++ GMRNSNC+AIAPTATI+NI GVS Sbjct: 719 LPQDTLDLLQEERGGYIEADRSSTLDWEALRERIRNHGMRNSNCLAIAPTATISNIVGVS 778 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI+P+++NLYVKSN+SG+FT+ N +LV++LK+ LWDE MISD+KY DG++G I+R+P Sbjct: 779 ASIEPTFKNLYVKSNLSGEFTIANQYLVSDLKKLGLWDEVMISDIKYFDGALGKIDRVPT 838 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +L+K++ATAFE++P WLIE+A+RRQKWIDQ+QSLN+Y+ SGKKLD Y+ AW+ GLKT Sbjct: 839 ELRKLYATAFEVEPQWLIEAAARRQKWIDQSQSLNIYIASVSGKKLDETYKLAWVRGLKT 898 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-----DTECEVCQ 954 TYYLRS ATS EKST++ G LNAVP + + +P++ S D ECE CQ Sbjct: 899 TYYLRSLGATSAEKSTVQA--GSLNAVPAEGSLPAMGAAAVPATDVSFCSVDDPECESCQ 956 >gi|73542625|ref|YP_297145.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia eutropha JMP134] gi|72120038|gb|AAZ62301.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134] Length = 979 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/905 (60%), Positives = 684/905 (75%), Gaps = 16/905 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++I++ LT+ V L++ S Sbjct: 39 KIIRRNGAVVAFEPSKINVAMTKAFLAVNGGQGAASARVREIVEQLTQNVVRALVRSRPS 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 +HIED+QD VE +LM+SG H++ R YVLYRE+R+ RA+ S ++ + Sbjct: 99 GGAIHIEDVQDHVELALMRSGEHEVARSYVLYREKRAQERASASAQAVARVQESGIQFNV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D G + L +++ AC+GL + VS++ +L ET KN+Y+G+ + + + I ++R Sbjct: 159 TDAGVTKPLDIVALHDLLDTACAGLGKAVSAEPILKETLKNLYEGVPMTQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TLIEK+P+Y++VTAR LL +R+E+L + T EM Y EYF ++I G+ A Sbjct: 219 TLIEKDPDYSQVTARILLHTIRKEILGA------EVTQAEMTTRYAEYFPKFIARGIAAE 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL E + FDL L L RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAMG Sbjct: 273 LLDEKLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL Sbjct: 333 LALNEADREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 453 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD GK FE AY YE +A GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKVGKAFEQAYLGYEAKAASGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLA 622 NIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+ KL Sbjct: 573 NIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLTKQADGSYVLDHAKLQ 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TIRTA+R+LDNVIDIN + +EKA+ SN HR +G+G+MGFQ LH+L PYAS AV+ Sbjct: 633 KTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAAVKF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG Y ++ GSLWD+G+ P DS+ LLAE R L ++ + Sbjct: 693 ADTSMEAVCYYAYQASTELAEERGRYETYAGSLWDRGILPQDSLKLLAEERGGYLEVDHS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 SSMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE++P WL+E+AS Sbjct: 813 VNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVS--RG 930 Query: 922 KLNAV 926 LNAV Sbjct: 931 SLNAV 935 >gi|302184854|ref|ZP_07261527.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. syringae 642] Length = 970 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMAELYAKALPAYVTAGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E ++++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|187930115|ref|YP_001900602.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia pickettii 12J] gi|187727005|gb|ACD28170.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12J] Length = 994 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/904 (60%), Positives = 679/904 (75%), Gaps = 17/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V SF+PSKI+ A+ KAF+AV G + S RV++++ T+ V LL+ + Sbjct: 41 KIIRRNGAVVSFEPSKIAVAMTKAFLAVNGGQGAASARVRELVDQQTQNVVRALLRSRPN 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE R+ RA Q+ P L + Sbjct: 101 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQQPAFIGLNVT- 158 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC GL + V + +L ET KN+Y+G+ + + + I +SRT Sbjct: 159 DGGITRPLDMAALRNVIVSACEGLGEAVDPEPILKETVKNLYEGVPMTQVYDSAILASRT 218 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++VTAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 219 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYVDYFPQFIKRGINAEL 272 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + + FDL L L RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAMGL Sbjct: 273 LDDKLAQFDLARLGAALDASRDFQFNYLGLQTLYDRYFLHISETRIEMPQAFFMRVAMGL 332 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 333 ALNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALK 392 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 393 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 453 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 512 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD GK FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 513 DLHDKVGKAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 572 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D++KL Sbjct: 573 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSVVLDHEKLKK 632 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTA+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ ALH+L +PYAS AV+ A Sbjct: 633 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASDAAVQFA 692 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLAE R L + +S Sbjct: 693 DTSMEAVCYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGGYLEADMSS 752 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 753 TMDWDSLRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 812 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P+WL+E+ASR Sbjct: 813 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPLWLVEAASR 872 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 873 RQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 930 Query: 923 LNAV 926 LNAV Sbjct: 931 LNAV 934 >gi|257485934|ref|ZP_05639975.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010342|gb|EGH90398.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 970 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRT-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|289648391|ref|ZP_06479734.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aesculi str. 2250] Length = 970 Score = 1141 bits (2952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQH GVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ Sbjct: 570 NLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|289628679|ref|ZP_06461633.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866024|gb|EGH00733.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 970 Score = 1141 bits (2952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQH GVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ Sbjct: 570 NLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|146282011|ref|YP_001172164.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas stutzeri A1501] gi|145570216|gb|ABP79322.1| ribonucleoside reductase, large chain [Pseudomonas stutzeri A1501] Length = 961 Score = 1141 bits (2951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/953 (58%), Positives = 705/953 (73%), Gaps = 21/953 (2%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 P LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + L Sbjct: 16 PDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARL 72 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 TEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE ++ R + S S Sbjct: 73 TEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQAVKRKSASGS 132 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 A P +++ DG+ + RL+ I+ EAC GL +V ++ ET KN+YDG++E Sbjct: 133 SDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGALIERETLKNLYDGVAE 192 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L + + ATHHEM LY + Sbjct: 193 KDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALGFL-GVAESATHHEMADLYAKA 251 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 YIE+GV+ LL + +DL L L +ERD F YLGLQ LYDRYF+H + R E Sbjct: 252 LPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFE 311 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTT Sbjct: 312 LPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTT 371 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTA Sbjct: 372 VPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTA 431 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV Sbjct: 432 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFD 491 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + WTLFSP +V DLHDL G+ FE YE YE G+IK+F+ + A LWRKML+MLFE Sbjct: 492 DGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFE 551 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H + + Sbjct: 552 TGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGK 611 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D KL T+RTAVR+LDNVIDIN +++ +A+ +N HR +GLG+MGFQ AL+L HI Y Sbjct: 612 LDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYG 671 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S A++ AD+SME IS+ AI AS +LA ERGAYSSF+GSLW +G+ P+DS +L E R + Sbjct: 672 SDAAIDFADKSMEAISYFAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARGQ 731 Query: 736 --LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++ + L W +++RVK G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKS Sbjct: 732 KYIDVDLSESLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKS 790 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 N+SG+FTV+N +LV++LK R LWD M++DLKY+DGS+ IERIP DLK ++ATAFE++ Sbjct: 791 NLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVET 850 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EK Sbjct: 851 KWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEK 910 Query: 914 STLKGVDGKLNAVP-----------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 ST+ GKLNAV + +P +C+ D +CE CQ Sbjct: 911 STIN--TGKLNAVSSGGSEAANSASAAPAAAEPKPAPVPLACSIDNPDCEACQ 961 >gi|167837967|ref|ZP_02464826.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis MSMB43] Length = 956 Score = 1141 bits (2951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/907 (59%), Positives = 684/907 (75%), Gaps = 15/907 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + + A + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESSAAGGINVT 158 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + + L ++ AC GL D V+ + +++ET KN+YDG+ + + + I ++RT Sbjct: 159 DNGVTRALDLNALRALIVSACEGLGDAVNPEPIVAETVKNLYDGVPMTQVYDSSILAART 218 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ T EM Y EYF ++++ GV+A L Sbjct: 219 MIEKDPAYSQVTARVLLHTIRREILG------EEVTQAEMATRYAEYFPQFLKRGVEAEL 272 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L + L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL Sbjct: 273 LDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 332 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 333 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 392 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 393 DNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 512 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 513 DLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D +KL Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLAKQADGTYALDEEKLKR 632 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL PYAS EAVE A Sbjct: 633 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASGEAVEFA 692 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ ++ Sbjct: 693 DRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSA 752 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W L+ R+ + GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 753 TLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 872 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930 Query: 923 LNAVPVT 929 LNAVP + Sbjct: 931 LNAVPTS 937 >gi|212212092|ref|YP_002303028.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii CbuG_Q212] gi|212010502|gb|ACJ17883.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii CbuG_Q212] Length = 941 Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/929 (60%), Positives = 698/929 (75%), Gaps = 20/929 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V+KR+G V +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+ LT+Q + Sbjct: 30 LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +VHIE IQD+VE +LM +G HK R YVLYREER R Q S+++ I I Sbjct: 90 SGGVVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAENTI----HIT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +DDG I + L +V ACS L+ V + +L ET N++DG++ D+ L+ ++RT Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E EPNY VTAR LL L REVL + PQ H ++ YPE F +I G++ Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 LH ++ FDL YLA LK ERD F YL LQ LYDRY +H RIE+PQ FFMRVAMGL Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324 Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 A E E + +RAVEFYN+LSSF FM STPTLFNSGT PQLSSCFLTTVPD L GI+GAL Sbjct: 325 AQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSPDEV Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G+ FEIAY YE +A RGEI+ + ISA++LWRK+L+MLFETGHPW+TFKD C Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIRS-KTISALSLWRKILSMLFETGHPWVTFKDAC 563 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H + + D +KLA T +T Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN +++ +A+ SN HR IGLGLMGFQ AL+L +IPYAS AV+ AD+SM Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746 E IS++AI AS+ELA+ERG Y +F SLW QG+ PIDSI LL + R + N L W Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 + L+K+V GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V ELK R LWD M+ DLKY++GS+ I+RIP +LKK++ATAFE++P WL+E+ASRRQKW Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS AT EK+T+ D LNA Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA- 920 Query: 927 PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 VT N+ P++C D +CE CQ Sbjct: 921 -VTGQNN-------PNACAIDDPDCEACQ 941 >gi|124268398|ref|YP_001022402.1| ribonucleotide-diphosphate reductase subunit alpha [Methylibium petroleiphilum PM1] gi|124261173|gb|ABM96167.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum PM1] Length = 971 Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/960 (57%), Positives = 701/960 (73%), Gaps = 34/960 (3%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S A P G Q+I+RNG V +F+P+KI+ A+MKAF+AV G + S V++++ LT Sbjct: 24 SRAAPGSSAYAGYQIIRRNGAVVAFEPNKIAVALMKAFLAVHGTQGAASASVREMVDGLT 83 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E V LL+ HIED+QD VE LM+ GHH+I R YVLYRE R+ RA Q Sbjct: 84 ESVVRALLRSRPGGGTFHIEDVQDAVELGLMRGGHHEIARAYVLYRERRAQERAKQGA-- 141 Query: 137 SDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLS 194 AP+ P + + ++D G + ++ RL+ +VE AC+ L +V + +L+ET +N+YDG+ Sbjct: 142 --APVTPAVALHVIDRGQRVPLDTGRLQALVESACANLGSEVQAAPILAETQRNLYDGVP 199 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 ++ A I ++RTLIEK+P Y + TAR LL +RRE+L + H EMQ Y + Sbjct: 200 IDEVYKAAILAARTLIEKDPAYTRATARLLLHTIRREILGG------EVLHEEMQQRYAD 253 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 YF +I++GV+A LL E +M +DL L LK +RD F+YLGLQ LYDRYFLH+ +RI Sbjct: 254 YFPGFIKQGVEAELLDERLMQYDLRRLGEALKADRDLQFDYLGLQTLYDRYFLHVRKARI 313 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSGTR QLSSC+LT Sbjct: 314 ELPQAFFMRVAMGLALNEVDREARAIEFYEVLSSFDFMSSTPTLFNSGTRRSQLSSCYLT 373 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV DDL GI+ A++ENA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDT Sbjct: 374 TVADDLDGIYEAIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDT 433 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV Sbjct: 434 AVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVI 493 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + WTLFSP DLHD +G FE AY YE++ADRGE+K+++++ A LWRKML+MLF Sbjct: 494 EGGDWTLFSPSTCPDLHDKFGIAFEQAYTAYEQKADRGELKLYKRVPAKDLWRKMLSMLF 553 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL H + Sbjct: 554 ETGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNGSEIAVCNLGSVNLAQHLMHG 613 Query: 615 ----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+ KL T+ TA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ +L+ L Sbjct: 614 AEGLEIDHAKLRKTVSTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDSLYQL 673 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 I YAS +AVE AD SME + +HA AS ELA+ERG YSS+KGSLWD+G+ PIDS+ LLA Sbjct: 674 RIAYASQQAVEYADRSMEAVCYHAYWASTELAEERGRYSSYKGSLWDRGILPIDSLDLLA 733 Query: 731 EVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 E R + ++R++ L WD L+ R++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL Sbjct: 734 EQRGGYVDVDRSTSLDWDALRARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNL 793 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P++LK ++ATAF Sbjct: 794 SVKSNLSGEFTVINEYLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAF 853 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 E++P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ AT Sbjct: 854 EVEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTVGAT 913 Query: 910 SVEKSTLKGVDGKLNAVPVTDPN---------------SSTHSLGIPSSCTSDTECEVCQ 954 EKST+K G LNAV SS + + D CE CQ Sbjct: 914 HAEKSTVKA--GHLNAVSSGSGGVDAVAAAAQAQFDAASSVPATDMKFCAIDDPTCEACQ 971 >gi|71734708|ref|YP_275880.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555261|gb|AAZ34472.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 970 Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC L +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACESLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E + ++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N + Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQK Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNA Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926 Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 V ++ P +C D +CE CQ Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970 >gi|29654844|ref|NP_820536.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii RSA 493] gi|161831609|ref|YP_001597388.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii RSA 331] gi|29542112|gb|AAO91050.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii RSA 493] gi|161763476|gb|ABX79118.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii RSA 331] Length = 941 Score = 1139 bits (2946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/929 (60%), Positives = 697/929 (75%), Gaps = 20/929 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V+KR+G V +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+ LT+Q + Sbjct: 30 LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S VHIE IQD+VE +LM +G HK R YVLYREER R Q S+++ I I Sbjct: 90 SGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAENTI----HIT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +DDG I + L +V ACS L+ V + +L ET N++DG++ D+ L+ ++RT Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E EPNY VTAR LL L REVL + PQ H ++ YPE F +I G++ Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 LH ++ FDL YLA LK ERD F YL LQ LYDRY +H RIE+PQ FFMRVAMGL Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324 Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 A E E + +RAVEFYN+LSSF FM STPTLFNSGT PQLSSCFLTTVPD L GI+GAL Sbjct: 325 AQSEGEARNQRAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSPDEV Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G+ FEIAY YE +A RGEI+ + ISA++LWRK+L+MLFETGHPW+TFKD C Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIRS-KTISALSLWRKILSMLFETGHPWVTFKDAC 563 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H + + D +KLA T +T Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN +++ +A+ SN HR IGLGLMGFQ AL+L +IPYAS AV+ AD+SM Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746 E IS++AI AS+ELA+ERG Y +F SLW QG+ PIDSI LL + R + N L W Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 + L+K+V GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V ELK R LWD M+ DLKY++GS+ I+RIP +LKK++ATAFE++P WL+E+ASRRQKW Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS AT EK+T+ D LNA Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA- 920 Query: 927 PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 VT N+ P++C D +CE CQ Sbjct: 921 -VTGQNN-------PNACAIDDPDCEACQ 941 >gi|327480259|gb|AEA83569.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas stutzeri DSM 4166] Length = 960 Score = 1139 bits (2946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/913 (59%), Positives = 694/913 (76%), Gaps = 9/913 (0%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 P LA P +++ VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + L Sbjct: 16 PDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARL 72 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 TEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE ++ R + S S Sbjct: 73 TEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQAVKRKSASGS 132 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 A P +++ DG+ + RL+ I+ EAC GL +V ++ ET KN+YDG++E Sbjct: 133 SDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGALIERETLKNLYDGVAE 192 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L + + ATHHEM LY + Sbjct: 193 KDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALGFL-GVAESATHHEMADLYAKA 251 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 YIE+GV+ LL + +DL L L +ERD F YLGLQ LYDRYF+H + R E Sbjct: 252 LPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFE 311 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTT Sbjct: 312 LPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTT 371 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTA Sbjct: 372 VPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTA 431 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV Sbjct: 432 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFD 491 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + WTLFSP +V DLHDL G+ FE YE YE G+IK+F+ + A LWRKML+MLFE Sbjct: 492 DGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFE 551 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H + + Sbjct: 552 TGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIKDGK 611 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D KL T+RTAVR+LDNVIDIN +++ +A+ +N HR +GLG+MGFQ AL+L HI Y Sbjct: 612 LDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYG 671 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S A++ AD+SME IS++AI AS +LA ERGAYSSF+GSLW +G+ P+DS +L E R + Sbjct: 672 SDAAIDFADKSMEAISYYAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARGQ 731 Query: 736 --LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++ + L W +++RVK G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKS Sbjct: 732 KYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKS 790 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 N+SG+FTV+N +LV++LK R LWD M++DLKY+DGS+ IERIP DLK ++ATAFE++ Sbjct: 791 NLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVET 850 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EK Sbjct: 851 KWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEK 910 Query: 914 STLKGVDGKLNAV 926 ST+ GKLNAV Sbjct: 911 STIN--TGKLNAV 921 >gi|153208311|ref|ZP_01946690.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706203|ref|YP_001423854.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii Dugway 5J108-111] gi|165919213|ref|ZP_02219299.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii RSA 334] gi|212219267|ref|YP_002306054.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii CbuK_Q154] gi|120576095|gb|EAX32719.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154355489|gb|ABS76951.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii Dugway 5J108-111] gi|165917074|gb|EDR35678.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii RSA 334] gi|212013529|gb|ACJ20909.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii CbuK_Q154] Length = 941 Score = 1139 bits (2946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/929 (60%), Positives = 697/929 (75%), Gaps = 20/929 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V+KR+G V +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+ LT+Q + Sbjct: 30 LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S VHIE IQD+VE +LM +G HK R YVLYREER R Q S+++ I I Sbjct: 90 SGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAENTI----HIT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +DDG I + L +V ACS L+ V + +L ET N++DG++ D+ L+ ++RT Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E EPNY VTAR LL L REVL + PQ H ++ YPE F +I G++ Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 LH ++ FDL YLA LK ERD F YL LQ LYDRY +H RIE+PQ FFMRVAMGL Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324 Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 A E E + +RAVEFYN+LSSF FM STPTLFNSGT PQLSSCFLTTVPD L GI+GAL Sbjct: 325 AQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSPDEV Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G+ FEIAY YE +A RGEI+ + ISA++LWRK+L+MLFETGHPW+TFKD C Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIRS-KTISALSLWRKILSMLFETGHPWVTFKDAC 563 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H + + D +KLA T +T Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN +++ +A+ SN HR IGLGLMGFQ AL+L +IPYAS AV+ AD+SM Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746 E IS++AI AS+ELA+ERG Y +F SLW QG+ PIDSI LL + R + N L W Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 + L+K+V GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V ELK R LWD M+ DLKY++GS+ I+RIP +LKK++ATAFE++P WL+E+ASRRQKW Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS AT EK+T+ D LNA Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA- 920 Query: 927 PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 VT N+ P++C D +CE CQ Sbjct: 921 -VTGQNN-------PNACAIDDPDCEACQ 941 >gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate reductase subunit alpha [Herminiimonas arsenicoxydans] gi|133739836|emb|CAL62887.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Herminiimonas arsenicoxydans] Length = 966 Score = 1139 bits (2946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/941 (58%), Positives = 685/941 (72%), Gaps = 29/941 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++++RNG V F+PSKIS A+ KAF+AV G + S RV+++++ LT V L++ + Sbjct: 39 RILRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTTNVVNALMRRQPA 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q +K +L + Sbjct: 99 GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRFKRMEERAQQQAAKPVVETEHQLHVT- 157 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 ++G + ++ ++ AC GL+ V + +L ET KN+YDG+ +L + I ++R Sbjct: 158 ENGQRRPLDMNQVRDLITAACIGLEKHVDADAILRETVKNLYDGVPVEELHKSAILAARA 217 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EK+P Y+ VTAR L+ +R+EV ++ Y YF +I++G+ A L Sbjct: 218 LMEKDPAYSTVTARLLMHTIRKEVFG------REVAQANAPAEYLVYFAEFIKKGIAAEL 271 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + +FDL LA+ LK ERD F YLGLQ LYDRYFLHI RIEMPQAF+MRVAMGL Sbjct: 272 LDAKLGEFDLKKLADALKPERDLQFGYLGLQTLYDRYFLHIADQRIEMPQAFYMRVAMGL 331 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E +E+RA+EFYNLLSSF FM STPTLFNSGT+ QLSSC+LTTV DDL GI+ A++ Sbjct: 332 ALNEANREERAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLGGIYDAIK 391 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 392 ENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAV 451 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP + Sbjct: 452 CAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDAP 511 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD GK FE AY YE +A RGE+K+F+KI A+ LWRKML+MLFETGHPWITFKDPCN Sbjct: 512 DLHDKVGKAFEEAYTGYEAKAARGELKLFKKIQALDLWRKMLSMLFETGHPWITFKDPCN 571 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+N+ AH + + D+ KL TIRTA Sbjct: 572 IRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNMPAHMKDGKLDHVKLQKTIRTA 631 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LH++ IPYAS +AV+ AD SME Sbjct: 632 MRMLDNVIDINYYAVNKARDSNLRHRPVGMGIMGFQDCLHMMRIPYASNDAVQFADNSME 691 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 + ++A AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLA+ R L + + W Sbjct: 692 AVCYYAYYASTELAEERGRYSSYKGSLWDRGILPQDSLKLLADERGAKYLEADYSETFDW 751 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FT +N +L Sbjct: 752 TPLRARIKEFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYL 811 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK R LWDE MISDLKY DGS+ I+RIP DL+ I+ATAFE++P WL+E+ASRRQKW Sbjct: 812 VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 871 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT EKST K G LNAV Sbjct: 872 IDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSK--TGALNAV 929 Query: 927 PVTDPNSSTHSLGIPSSCTSD-------------TECEVCQ 954 + S S+ +D ECE CQ Sbjct: 930 ----DSGGGSSTAAQSAAETDGPACILRPGDAGFEECEACQ 966 >gi|171463020|ref|YP_001797133.1| ribonucleoside-diphosphate reductase, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192558|gb|ACB43519.1| ribonucleoside-diphosphate reductase, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 990 Score = 1138 bits (2943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/949 (58%), Positives = 696/949 (73%), Gaps = 33/949 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++ ++ LT V LL+ + Sbjct: 51 KIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALLRSRPN 110 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK----- 144 HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAAQ + A + Sbjct: 111 GGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVSQEVQTANQAGESG 170 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K+ D+G + L ++E AC GL + + +++ET KN+YDG+ + + + I Sbjct: 171 IKVT-DNGVEKWLDMAALRTVMEAACEGLGTHIDASPIVTETIKNLYDGVPMAQVYDSAI 229 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +SRTLIEK+P Y++VTAR L+ + +E+L ++ +MQ Y YF +YI EG Sbjct: 230 LASRTLIEKDPAYSQVTARILMHVIHKEILG------KEVLQGDMQAEYSTYFAKYINEG 283 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + A LL M +FDL LA L RD F YLGLQ LYDRYFLHI RIEMPQAFFMR Sbjct: 284 ISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEMPQAFFMR 343 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T PQLSSC+LTTV DDL GI Sbjct: 344 VAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTVEDDLDGI 403 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGK Sbjct: 404 YEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGK 463 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+T+NWIPDLFMKRV +N WTLFS Sbjct: 464 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMSTSNWIPDLFMKRVMENGEWTLFS 523 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P DLH +GK FE AY YE++ADRGE+K FR+I A LWRKML MLFETGHPWITF Sbjct: 524 PSNTPDLHGKFGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFETGHPWITF 583 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQ--FDY 618 KDPCNIRSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL AH AN + D+ Sbjct: 584 KDPCNIRSPQQHIGVVHSSNLCTEITLNTNEDEIAVCNLGSVNLTAHMTTDANGKMILDH 643 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL T+RTA+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LH+ IPYAS E Sbjct: 644 EKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQRIPYASDE 703 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737 AV+ AD SME + ++A AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA R L Sbjct: 704 AVKFADSSMEAVCYYAYQASNELAEERGVYSTYKGSLWDRGILPQDSVALLAAERGGYLE 763 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ +S + W+ L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNL+VKSN+SG Sbjct: 764 VDSSSTMDWNGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLFVKSNLSG 823 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FTVVN +LV +LK R LWDE MI+DLKY DG++ I+RIP DL+ ++ATAFE+DP WL+ Sbjct: 824 EFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFEVDPTWLV 883 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT VEKST+ Sbjct: 884 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTV- 942 Query: 918 GVDGKLNAVPV------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 G+LNAV TD ++ CT ECE CQ Sbjct: 943 -ASGQLNAVSSGGGVNGTDAAAAGGVEADGPVCTMRPGDAGFEECEACQ 990 >gi|325983071|ref|YP_004295473.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas sp. AL212] gi|325532590|gb|ADZ27311.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas sp. AL212] Length = 954 Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/931 (58%), Positives = 697/931 (74%), Gaps = 15/931 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V +F+P KIS A+ KAF+AV+G + S+RV++++ NLT+ V LL+ Sbjct: 33 RVIRRNGAVVTFEPGKISVALTKAFIAVDGGQGAASVRVREVVVNLTQDVVNALLRRQPD 92 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + HIEDIQDQVE +LM+SG H + R YVLYREER+ RA KS A A ++ +M Sbjct: 93 SGTFHIEDIQDQVELALMRSGEHDVARAYVLYREERTRERARLKQ-KSTAETAAEVLYVM 151 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + + +L ++E +C+GL + V ++L T K++YDG+ ++ +LI S+R Sbjct: 152 DNGQRVPLDVAKLSALIETSCAGLGNAVDPALILKATLKDLYDGVPIDEVRKSLILSARV 211 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y+ VTAR LL+ +R EVL + + M+ Y EYF +I+ G++A L Sbjct: 212 LIEKDPAYSYVTARLLLDNVRYEVLGA------EVSQQAMKSHYQEYFPAFIKRGIEADL 265 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + + FDL L+ L +RD F+YLGLQ LYDRYFLHI RIE+PQAFFMRVAMGL Sbjct: 266 LDQRLAQFDLARLSEALDADRDLQFDYLGLQTLYDRYFLHIKEQRIELPQAFFMRVAMGL 325 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ Sbjct: 326 ALNEIDREARAIEFYQVLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVPDDLDGIYESIK 385 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+LAKY+GGLGNDWT VR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGGKRKGAV Sbjct: 386 ENALLAKYAGGLGNDWTAVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAV 445 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH+D+EEFL+LRKNTGDDRRRTHDMNTA WIPDLFMKRV + WTLFSP +V Sbjct: 446 CAYLECWHLDIEEFLELRKNTGDDRRRTHDMNTATWIPDLFMKRVMEGGDWTLFSPSDVP 505 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLH+ +G++FE AY YE + +RGE+++++KI AV LWRKML+MLFETGHPWITFKDPCN Sbjct: 506 DLHEKFGQQFEQAYLGYEARIERGELELYKKIPAVQLWRKMLSMLFETGHPWITFKDPCN 565 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL+AH + D DKL TI Sbjct: 566 VRSPQNHIGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLVAHLKDGALDLDKLKRTIHVV 625 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ LH L IPY SP AVE AD SME Sbjct: 626 MRMLDNVIDINFYAVAKARNANLKHRPVGLGIMGFQDCLHQLGIPYGSPAAVEFADRSME 685 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 +++ A AS ELAQERG YS++KGSLWD+G+ P D++ +L + R + + ++ L WD Sbjct: 686 AVAYQAYWASTELAQERGCYSTYKGSLWDRGILPHDTLTVLQQERGGYVEADLSATLDWD 745 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L++R+K GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FT+ N LV Sbjct: 746 ALRQRIKLHGMRNSNCLAIAPTATISNIVGVSASIEPTYQNLYVKSNLSGEFTITNRSLV 805 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+LK+ +LWDE MISDLKY DG+I I+RIPD+++ ++ATAFE+DP+WLIE+ +RRQKWI Sbjct: 806 NDLKKLNLWDEVMISDLKYFDGAISKIDRIPDNIRTLYATAFEMDPLWLIEAGARRQKWI 865 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQ+QSLN+Y+ SGKKLD Y+ AWL GLKTTYYLRS AT+ EKST++ G LNAVP Sbjct: 866 DQSQSLNIYMGGVSGKKLDETYKLAWLRGLKTTYYLRSMGATAAEKSTVRA--GSLNAVP 923 Query: 928 ----VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ++ I D CE CQ Sbjct: 924 ADGGIVKAAVEVSTVEIKYCAIDDESCESCQ 954 >gi|330815477|ref|YP_004359182.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia gladioli BSR3] gi|327367870|gb|AEA59226.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia gladioli BSR3] Length = 993 Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/905 (60%), Positives = 678/905 (74%), Gaps = 16/905 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V +F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 39 KVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALLRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R RA S + + P + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERA-HSDAPVETPDGSSGLTVT 157 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + K L +V AC GL V+ +++ET KN+YDG+ S + + I ++RT Sbjct: 158 DKGVSRPLDMKALHGLVAAACEGLGSAVNPDPIVAETVKNLYDGVPLSQVYDSAILAART 217 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ EMQ Y EYF ++++ GV+A L Sbjct: 218 MIEKDPAYSQVTARILLHTIRREILG------EEVAQGEMQARYAEYFPQFLKRGVEAEL 271 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDLV L L RD F YLGLQ LYDRYFLH+ G+RIEMPQAF+MRVAMGL Sbjct: 272 LDDKLLQFDLVRLGEALDASRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFYMRVAMGL 331 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 332 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 391 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 392 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 451 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 452 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 511 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGE+K+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 512 DLHDKFGAEFEAAYLGYEEKVARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 571 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A D+DKL Sbjct: 572 IRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLAKQADGSYALDHDKLKR 631 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL P++S AVE A Sbjct: 632 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFSSDTAVEFA 691 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS+ GSLWD+G+ P D++ LL E R + ++ + Sbjct: 692 DRSMEAVCYYAYWASTELAEERGRYSSYTGSLWDRGILPQDTLKLLEEARGGYVEVDMSE 751 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNL+VKSN+SG+FTVV Sbjct: 752 SLDWTSLRGRISVHGMRNSNCIAIAPTATISNIIGVSPCIEPTFQNLFVKSNLSGEFTVV 811 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 812 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 871 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+++ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RQKWIDQAQSLNIFMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 929 Query: 923 LNAVP 927 LNAVP Sbjct: 930 LNAVP 934 >gi|167586059|ref|ZP_02378447.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia ubonensis Bu] Length = 990 Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/909 (59%), Positives = 678/909 (74%), Gaps = 20/909 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTHNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R H+ +AP + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLER---QHAGEEAPAVESAGGIN 155 Query: 149 -MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 +D+G + L ++ AC GL V+ +++ET KN+YDG+ S + + I ++ Sbjct: 156 VVDNGVTRPLDLNALRALIVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAA 215 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RT+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 216 RTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDA 269 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH++GSRIEMPQAFFMRVAM Sbjct: 270 GLLDDKLLQFDLKRLGDALDANRDLQFGYLGLQTLYDRYFLHVDGSRIEMPQAFFMRVAM 329 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ A Sbjct: 330 GLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEA 389 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 390 LKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 449 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 450 AVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPST 509 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDP Sbjct: 510 CPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDP 569 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621 CN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 570 CNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKL 629 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 T+ A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 630 KRTVSVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQAAVE 689 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ Sbjct: 690 FADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDT 749 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + L W EL+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FT Sbjct: 750 SESLDWSELRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 809 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +LV +LK+R LWDE M++DLKY DG + I+R+P DL+ I+ATAFE+DP WL+E+A Sbjct: 810 VVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPTWLVEAA 869 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ Sbjct: 870 SRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AH 927 Query: 921 GKLNAVPVT 929 G LNAVP + Sbjct: 928 GALNAVPTS 936 >gi|330980157|gb|EGH78343.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 971 Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/945 (58%), Positives = 695/945 (73%), Gaps = 24/945 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EEGVKAR 267 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTPAGIKFE 269 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMG Sbjct: 270 LLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMG 329 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 LAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAI 389 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 390 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 449 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 VCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEV 509 Query: 508 SDLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDP Sbjct: 510 PDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDP 569 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D DKL T+ Sbjct: 570 CNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVD 629 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD S Sbjct: 630 VAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTS 689 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744 ME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E ++++ L Sbjct: 690 MEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETL 749 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQ Sbjct: 809 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLN Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLN 926 Query: 925 AVPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954 AV ++ P +C D +CE CQ Sbjct: 927 AVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 971 >gi|300690380|ref|YP_003751375.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum PSI07] gi|299077440|emb|CBJ50066.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum PSI07] Length = 987 Score = 1136 bits (2938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/903 (60%), Positives = 676/903 (74%), Gaps = 17/903 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE R+ RA Q+ P L + Sbjct: 97 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQPPAFIGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC+GL + V + +L ET KN+Y+G+ S + + I ++RT Sbjct: 155 DGGITRPLDMAALRNLIVSACAGLGEAVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++VTAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 215 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMAARYADYFPQFIKRGINAGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E + FDL L L RD F YLGLQ L+DRYFLHI+ RIEMPQAFFMRVAMGL Sbjct: 269 LDEKLAQFDLAKLGAALDASRDLQFNYLGLQTLFDRYFLHISEKRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDRESRAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD GK FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKVGKAFETAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+DKL Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVTQADGSVALDHDKLKK 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ ALH+L IPYAS AV+ A Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALHVLRIPYASDAAVQFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R L + +S Sbjct: 689 DNSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLEADLSS 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 749 SMDWDSLRARIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926 Query: 923 LNA 925 LNA Sbjct: 927 LNA 929 >gi|297538243|ref|YP_003674012.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera sp. 301] gi|297257590|gb|ADI29435.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera sp. 301] Length = 938 Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/933 (60%), Positives = 692/933 (74%), Gaps = 18/933 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVI+RNG F KIS AI KAF+AVEG + S RV+D + L++ L++ Sbjct: 17 LQVIRRNGAAVQFTLDKISIAITKAFLAVEGNQSGASQRVRDQVATLSQLVNNALMRRLP 76 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +HIEDIQDQVE +LM++G+H + R YVLYRE+R+ RAA+ S ++ L + Sbjct: 77 AGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKASHPTTELSHTLNVN 136 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D G LI + K+L +V EAC L DV + IV+ + +++YDG+ +++ ALI S+R Sbjct: 137 ID-GKLIPLDIKQLNEMVGEACLNLGDVVNPSIVVEQAVRDLYDGIPFTEVYKALILSAR 195 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 +LIE EP Y VTAR L+ +R EVL ++ +H +M Y EYF RYI+ G+ A Sbjct: 196 SLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAQMDEHYAEYFPRYIKMGINAE 249 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + FDL LA L +RDF F YLG+Q LYDRYFLHI RIE+PQ FFMRVAMG Sbjct: 250 LLDSRLAQFDLTKLAAALNKDRDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMRVAMG 309 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA+ E ++E RA+EFYN+LSSF FM STPTLFN+GT H QLSSC+LTTV DDL GI+ + Sbjct: 310 LAINEIDRESRAIEFYNVLSSFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGIYQGI 369 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENAML KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV NDTAVAVNQGGKRKGA Sbjct: 370 KENAMLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGA 429 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RVT+ WTLFSP +V Sbjct: 430 VCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEAGDWTLFSPSDV 489 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD YGK FE AY YER+A+ GEIK+F+KI A+ +WRKML+MLFETGHPWITFKDPC Sbjct: 490 PDLHDKYGKAFETAYVEYERRAENGEIKLFKKIPALQMWRKMLSMLFETGHPWITFKDPC 549 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLAS 623 NIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NLL H A D DKL + Sbjct: 550 NIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLLQHLAEVNGKLVLDNDKLQA 609 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI+ +R+LDNV+DIN + + KA+ +N HR +G+G+MGFQ+ LH + IPYAS EAVE A Sbjct: 610 TIKIGMRMLDNVVDINFYPVGKARNANTRHRPVGMGIMGFQNCLHAMRIPYASMEAVEFA 669 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTS 742 D +ME + ++A AS LA+ER AYSSFKGSLWDQG+ P+D++ LL R + ++R+ Sbjct: 670 DRAMEMVCYNAYYASTVLAEERAAYSSFKGSLWDQGILPLDTLDLLLNERGGNVEVDRSK 729 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+FT+V Sbjct: 730 TLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTIV 789 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LV +LK R LWD M+SDLKY DGS+ I+R+P DLK+++ATAF++DP WLIE+A+R Sbjct: 790 NEQLVIDLKARGLWDAVMVSDLKYFDGSLQKIDRVPADLKQLYATAFDVDPTWLIEAAAR 849 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLNLY PSGKKL+ Y AW GLKTTYYLRS AT+ EKST G G+ Sbjct: 850 RQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSMGATAAEKST--GSGGE 907 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 LNAV + L P C+ D ECE CQ Sbjct: 908 LNAVSAGLEEAPKEYL--PKVCSIDNPECESCQ 938 >gi|92112800|ref|YP_572728.1| ribonucleotide-diphosphate reductase subunit alpha [Chromohalobacter salexigens DSM 3043] gi|91795890|gb|ABE58029.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens DSM 3043] Length = 976 Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/906 (60%), Positives = 676/906 (74%), Gaps = 10/906 (1%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 P++++ VIKR G V +FD SKIS AI KAF+A EG A+ S R+++ + T+ V Sbjct: 17 PQRLR---VIKRGGEVAAFDGSKISVAITKAFIATEGDNAAASSRIREFVSEATQSIVDT 73 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 L+ +HIEDIQDQVE +LM++G K+ R YVLYREE + RA Q A Sbjct: 74 FLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHA--RARQPQGADIAKPH 131 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P L + DGT+ + R+E +V +AC GL +V + ++ + KN+YDG+ + TAL Sbjct: 132 PSLNVTQADGTVRPLDLGRVETLVADACEGLANVEPQKIVDASLKNLYDGVPIDGVATAL 191 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + ++RTL+EKEPNY TAR L + LRRE L+ + +AT+ EM LY F YI++ Sbjct: 192 MMTARTLVEKEPNYTYATARLLQDNLRREALSFL-GIADEATYQEMATLYAPAFKAYIDK 250 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G++ L E + +FDL L L + RD F YLGLQ LYDRYFLH + R E+PQ FM Sbjct: 251 GIEFEQLDERLREFDLDRLGAALDHTRDNQFTYLGLQTLYDRYFLHHDDVRYELPQVMFM 310 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E + E RA+EFY LLSSF +M STPTLFN+GT+ QLSSC+LTTVPD L G Sbjct: 311 RVAMGLALNEDDPEARAIEFYELLSSFDYMASTPTLFNAGTQRSQLSSCYLTTVPDQLDG 370 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGG Sbjct: 371 IYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG 430 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV + WTLF Sbjct: 431 KRKGAVCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDEEWTLF 490 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP DLHDLYG FE Y YE G++K+F+++ A LWRKML+MLFETGHPWIT Sbjct: 491 SPSTCPDLHDLYGAAFEKRYAEYEEMTRNGQLKLFKRVKAKDLWRKMLSMLFETGHPWIT 550 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDPCN+RSPQ H GVVHSSNLCTEITLN+S++E AVCNLGS+NL H + Q D DKL Sbjct: 551 FKDPCNLRSPQNHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAQHIVDGQLDGDKLK 610 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T++TAVR+LDNVIDIN + + +A+ SN HR +GLGLMGFQ AL+ L I YAS +AV Sbjct: 611 KTVKTAVRMLDNVIDINYYAVPQARNSNFKHRPVGLGLMGFQDALYQLGIAYASDDAVTF 670 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNR 740 AD SME IS+HAI AS +LA ERG Y SF+GSLW +GV PIDSI LAE R D + ++ Sbjct: 671 ADTSMELISYHAIEASSDLATERGRYQSFEGSLWSKGVLPIDSIAKLAEERGADYIEVDT 730 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 ++ W L+ +V GMRNSN MAIAPTATI+NICGV+QSI+P+YQNL+VKSN+SG+FT Sbjct: 731 STTQDWARLRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQNLFVKSNLSGEFT 790 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN+++VN+LK R LWDE MI+DLKY+DGS+ I+RIPDDLK +A+AFE++P WL+E+A Sbjct: 791 VVNAYMVNDLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASAFEVEPKWLVEAA 850 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 +RRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ ATSVEKST+ Sbjct: 851 ARRQKWIDQAQSLNLYIAGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEKSTVD--R 908 Query: 921 GKLNAV 926 GKLNAV Sbjct: 909 GKLNAV 914 >gi|325001022|ref|ZP_08122134.1| ribonucleoside-diphosphate reductase alpha chain [Pseudonocardia sp. P1] Length = 927 Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/911 (60%), Positives = 678/911 (74%), Gaps = 21/911 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VI+R+G TSFD SKIS A+ KAF+AVEG + S R+ +++ LT Q V L +H Sbjct: 19 LRVIRRDGSETSFDASKISVAMTKAFLAVEGGAGASSSRLHPLVQELTGQVVAALHRHPT 78 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA-PKLKI 147 +V +E IQDQVE +LM+ HHK+ R YVLYRE+++ RA S DA A + + Sbjct: 79 P--VVQVEQIQDQVELALMRGEHHKVARSYVLYREQQAQARA----SGPDAGGASATIHV 132 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 DGT + R+E ++ EA G+ DV + VL+E + +YDG++ +L AL+ ++R Sbjct: 133 TGPDGTRAPLDRDRVETVLAEALDGIDDVEAAPVLAELDRTVYDGITADELSQALVMAAR 192 Query: 208 TLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 TL+E+EP+Y+ V +R L+++LR E L+ + P +AT M Y Y Y+ + Sbjct: 193 TLVEREPDYSLVASRLLMDRLRAEAVSHLSGTRETPDQAT---MARDYASYTKDYLRHAI 249 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 L+ + FDL + L ERD +LGLQ LYDRYFLH +G+R E+PQAFF+RV Sbjct: 250 AIGLVDAELATFDLDRVTAALHPERDLQIGFLGLQTLYDRYFLHEHGTRFELPQAFFLRV 309 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLA++E ++E RA+EFY LLSSF FM STPTLFNSGT PQLSSCFLTTV DDL IF Sbjct: 310 AMGLAVREVDREARAIEFYELLSSFDFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIF 369 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 G + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG SQGV+PFLK+A DTAVAVNQGGKR Sbjct: 370 GGYRNNALLAKYSGGLGNDWTPVRGLGAHIRGTNGVSQGVVPFLKIAGDTAVAVNQGGKR 429 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV + WTLFSP Sbjct: 430 KGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADTTWTLFSP 489 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DEV DLHDLYG EF Y YE A+RGE++V R + AV LWR+MLTMLFETGHPW+TFK Sbjct: 490 DEVPDLHDLYGLEFAERYRAYEAAAERGELRVHRTVRAVDLWRRMLTMLFETGHPWVTFK 549 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSS------EETAVCNLGSINLLAHFANNQFDY 618 DPCN+RSPQQH GVVHSSNLCTEITLN+ + E AVCNLGS+NL AH + D Sbjct: 550 DPCNLRSPQQHAGVVHSSNLCTEITLNTRAGHDDDRGEVAVCNLGSVNLAAHVTRDGLDA 609 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 DKL T+ TAVR+LDNV+DIN +TI +A++SN HR +GLG+MGF AL L I S Sbjct: 610 DKLRRTVTTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGMMGFSDALFLQRIAPGSEA 669 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DEL 736 AV AD S E +S+HAI+AS +LA ERG Y+SF+GSLW +GV PIDS+ LLA+ R EL Sbjct: 670 AVGFADVSAEVLSYHAIAASSDLAAERGRYASFEGSLWSRGVLPIDSLDLLADARGEGEL 729 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++R+S L W L++ V+T GMRNSN +AIAPTATI+NICGV QSI+P + NLYVKSNMS Sbjct: 730 EIDRSSTLDWASLRETVRTQGMRNSNVLAIAPTATISNICGVGQSIEPIHLNLYVKSNMS 789 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDFTVVN LV +LK+R LWDE M+SDLKY DGS+ I+R+P DLK+++ATAFEI+P WL Sbjct: 790 GDFTVVNPHLVRDLKERGLWDEVMVSDLKYFDGSLAEIDRVPGDLKELYATAFEIEPRWL 849 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 +E+ASRRQKW+DQAQSLNLYL PSG+KLD +YR AW GLKTTYYLR+R+ATSVEKSTL Sbjct: 850 VEAASRRQKWLDQAQSLNLYLAGPSGRKLDELYRLAWRSGLKTTYYLRTRAATSVEKSTL 909 Query: 917 KGVDGKLNAVP 927 KG DG+L VP Sbjct: 910 KGTDGRLTGVP 920 >gi|302877616|ref|YP_003846180.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella capsiferriformans ES-2] gi|302580405|gb|ADL54416.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella capsiferriformans ES-2] Length = 944 Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/934 (58%), Positives = 689/934 (73%), Gaps = 26/934 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V++RNG V F+P+KIS A+ KAF+AV G A+ S RV++++ LT+ V L++ Sbjct: 28 KVVRRNGSVVVFEPAKISVALTKAFIAVSGGPAAASARVRELVDQLTQGVVIALMRRQPH 87 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 +HIEDIQDQVE LM+SG H + R YVLYREE S RA Q+ + A + + + Sbjct: 88 GGTLHIEDIQDQVELGLMRSGEHDVARAYVLYREEHSRSRA-QTQVQQPAHV---INVTG 143 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG + + RL ++V+ AC GL +V +++VL K+MYDG+ ++ LI S+R+ Sbjct: 144 KDGVVQPLDLARLSVLVQSACEGLGEVVDAELVLQVALKDMYDGVPLHEVHKCLILSARS 203 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEKEP Y VTAR LL + EVL + +M Y +YF ++I+ G+ A L Sbjct: 204 MIEKEPAYNFVTARLLLNNICSEVLG------EDVAPADMATRYADYFPKFIKRGIAAEL 257 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E + FDL LA +L RD F YLGLQ LYDRYFLHI G+RIE PQ FFMRVAMGL Sbjct: 258 LDEKLAGFDLPRLAAELDASRDLQFGYLGLQTLYDRYFLHIGGTRIEAPQVFFMRVAMGL 317 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY LLS F FMCSTPTLFNSG+R QLSSC+L+TV D+L GI+ A++ Sbjct: 318 ALNEIDREARAIEFYRLLSGFDFMCSTPTLFNSGSRRSQLSSCYLSTVEDNLEGIYDAIK 377 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+LAK++GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 378 DNALLAKFAGGLGNDWTPVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 437 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT+NWIPDLFMKRV + WTLFSP +V Sbjct: 438 CAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGNWTLFSPSDVK 497 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL+G +FEIAY YE +A G+IK+++ + A +LWRKMLTMLFETGHPWITFKDPCN Sbjct: 498 DLHDLFGIDFEIAYTAYEEKAAAGQIKLYKTVQAASLWRKMLTMLFETGHPWITFKDPCN 557 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLA 622 IRSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NL AH Q D+ KL Sbjct: 558 IRSPQQHVGVVHSSNLCTEITLNTNADEIAVCNLGSVNLPAHLYPEGHDLAGQIDHAKLR 617 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI TA+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LH L +PY+S EAVE Sbjct: 618 RTINTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHQLRLPYSSMEAVEF 677 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG Y+S+KGSLWD G+ P D++ LL E R + ++ + Sbjct: 678 ADRSMEAVCYYAYWASTELAEERGRYASYKGSLWDCGILPQDTLDLLREERGGYVEVDTS 737 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + WD L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P+YQNL+VKSN+SG+FTV Sbjct: 738 VSMDWDALRARIGQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLFVKSNLSGEFTV 797 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +N LV ELK+ LWDE MISDLKY DGS+ I+RIP +L+ ++ATAFE++P WLIE+AS Sbjct: 798 INDHLVAELKRLGLWDEVMISDLKYFDGSLAKIDRIPAELRSLYATAFEVEPSWLIEAAS 857 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SG+KLD Y+ AW+ GLKTTYYLR+ ATS EKST G G Sbjct: 858 RRQKWIDQAQSLNIYMAGVSGRKLDDTYKLAWVRGLKTTYYLRTLGATSAEKST--GRAG 915 Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 LNAV V D + T C+ D ECE CQ Sbjct: 916 ALNAVSVGDAPAETTQF-----CSIDNPECEACQ 944 >gi|288941564|ref|YP_003443804.1| ribonucleoside-diphosphate reductase subunit alpha [Allochromatium vinosum DSM 180] gi|288896936|gb|ADC62772.1| ribonucleoside-diphosphate reductase, alpha subunit [Allochromatium vinosum DSM 180] Length = 985 Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/945 (59%), Positives = 703/945 (74%), Gaps = 20/945 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 VQVI+RNG +T FDPSKI A+ KAF+AVEG A S R+ D + LTEQ V L + Sbjct: 42 VQVIRRNGQITHFDPSKIMVAMTKAFLAVEGDSAGASSRIHDRVAELTEQVVGALTRRLS 101 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP-KLKI 147 VHIEDIQDQVE +LM++G H+I R+YVLYRE R+ RAA+S +++ A P + + Sbjct: 102 GGGTVHIEDIQDQVELALMRAGEHRIARDYVLYREARARERAARSAAETAAIREPHPINV 161 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + DG+ + + ++EE+C L V +LS+T +N++DG+ E+D+ AL+ S+R Sbjct: 162 TLADGSTRPLDVAHMARLLEESCRDLDAVDPNAILSDTLRNLFDGVREADVRQALVMSAR 221 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TLIE+EP Y++ AR LL+ LRRE L + T +M Y +YF YI+ Sbjct: 222 TLIEREPQYSQAAARLLLDILRREALGFLDLAVGVETQADMAERYGDYFAAYIKRAADLE 281 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326 L + +DL L LK ERD F YLGLQ LYDRYF+H +G R E+PQAFFMRVAM Sbjct: 282 HLDGQLARYDLKRLGAALKPERDLQFTYLGLQTLYDRYFIHTADGIRFELPQAFFMRVAM 341 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLA+ E E+E+RA+EFY LLSSF FMCSTPTLFNSG+ PQLSSCFLTTVPDDL GI+ A Sbjct: 342 GLAINEIEREERAIEFYELLSSFDFMCSTPTLFNSGSPRPQLSSCFLTTVPDDLDGIYSA 401 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGVIPFLKVANDTA+AVNQGG+R+G Sbjct: 402 IKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVIPFLKVANDTAIAVNQGGRRRG 461 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV ++ WTLFSPDE Sbjct: 462 AVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEDGHWTLFSPDE 521 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDL G+ FE AY YE +A RGE+K+ +++ AV LWRKML MLFETGHPWI FKDP Sbjct: 522 TPDLHDLTGQAFEQAYVAYEERAARGELKISKRLKAVDLWRKMLAMLFETGHPWIAFKDP 581 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CN+R QHVGVVHSSNLCTEITL+++ E AVCNLGSINL AH + D +L T+R Sbjct: 582 CNLRYTNQHVGVVHSSNLCTEITLHTNDLEAAVCNLGSINLAAHITDKGLDTQRLRRTVR 641 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVID N + + +A+ SN HR +GLGLMGFQ AL+ L IPYAS EAV AD+S Sbjct: 642 TAMRMLDNVIDYNFYNVPQARASNLRHRPVGLGLMGFQDALYRLRIPYASQEAVAFADQS 701 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745 E++S++AI AS +LA ERG Y SF+GSLW QGV PIDSIGL+ + R L M+ + L Sbjct: 702 TEYLSYYAIEASADLAAERGRYPSFEGSLWSQGVLPIDSIGLMEQGRGGYLQMDTSHTLD 761 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L++R++T+GMRNSNC+AIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN + Sbjct: 762 WDRLRERIQTVGMRNSNCLAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVVNPY 821 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK+R LWD M++DLKY+DGS+ I+RIPD+LK+++ATAFEIDP WL+E+ASRRQK Sbjct: 822 LVADLKERGLWDAVMVNDLKYYDGSLLPIDRIPDELKELYATAFEIDPRWLVEAASRRQK 881 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 W+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKTTYYLRS AT VEKST+ G+ N Sbjct: 882 WLDQAQSLNLYMQEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTMADT-GRANR 940 Query: 926 VPVTDPNSSTHSLGIPS---------------SCTS-DTECEVCQ 954 + N PS +C+ D +CE CQ Sbjct: 941 LSAVGGNYLGRQTAKPSDTTDDTPAAATATPSACSILDPDCEACQ 985 >gi|121606274|ref|YP_983603.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas naphthalenivorans CJ2] gi|120595243|gb|ABM38682.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas naphthalenivorans CJ2] Length = 967 Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/957 (56%), Positives = 698/957 (72%), Gaps = 32/957 (3%) Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78 A P + Q+I+RNG V +F+PSKI+ A+MKAF+AV G + S V++ + LT+ Sbjct: 22 ATPASGALANYQIIRRNGSVVAFEPSKIAVAMMKAFLAVHGTQGAASASVRETVDTLTQA 81 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 V L++ S HIED+QDQVE LM+ GHH+I R YVLYRE+ + RA Q +++ Sbjct: 82 VVRALMRSRPSGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYREKHNQERARQLQAQT- 140 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESD 197 P P+L +M D G ++ + + L+ ++E +C+ L DV ++SET +N+YDG+ + Sbjct: 141 -PALPQLHVM-DGGKRVALDLRNLQALIEASCANLGTDVKPDPIVSETMRNLYDGVPIEE 198 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + A I ++RTLIEK+P+Y TAR LL +R+EVL ++ +H M Y YF Sbjct: 199 VYKASILAARTLIEKDPDYTYATARLLLHTIRKEVLD------EEISHEAMAVRYVTYFP 252 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 +I +G+K LL E + FDL L LK ERD F+YLGLQ L+DRYFLHI RIE+P Sbjct: 253 EFIAKGIKNELLDEKLQQFDLARLGAALKPERDLQFDYLGLQTLFDRYFLHIRKQRIELP 312 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 QAFFMRVAMGL+L ET++E RA+EFY +LSSF FM STPTLFN+GT QLSSC+LTTV Sbjct: 313 QAFFMRVAMGLSLNETDREARAIEFYEILSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVA 372 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DDL GI+ A++ENA+L+K++GGLGNDWTPVR +GAHI GTNG+SQGV+PFLKV NDTAVA Sbjct: 373 DDLGGIYDAIKENALLSKFAGGLGNDWTPVRAMGAHIKGTNGESQGVVPFLKVVNDTAVA 432 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFM+RV + Sbjct: 433 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMRRVMEKG 492 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTLFSP + DLHD +G++FE AY YE +A+RGE+K RK+ A +WRKML+MLFETG Sbjct: 493 SWTLFSPSDTPDLHDKFGQDFEKAYVAYEARAERGELKPSRKLQATDMWRKMLSMLFETG 552 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 HPWITFKD CNIRSPQQH GVVHSSNLCTEITLN+S+ ETAVCNLGSINL+ H + D Sbjct: 553 HPWITFKDACNIRSPQQHAGVVHSSNLCTEITLNTSATETAVCNLGSINLVQHLKDGALD 612 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +DKL TI TA+R+LDNVIDIN + +EKA+ SN HR +GLGLMGFQ L+ L +PYAS Sbjct: 613 HDKLKKTITTAMRMLDNVIDINYYAVEKARHSNMRHRPVGLGLMGFQDCLYELRVPYASQ 672 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-L 736 AVE AD SME I +HA AS ELA+ERG Y S+KGSLWDQG+ P+D++ +LA+ R + Sbjct: 673 AAVEFADTSMEAICYHAYWASTELARERGQYESYKGSLWDQGILPLDTLDMLAKERGGYV 732 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++R++ L WD L++++ T GMRNSNC+AIAPTATI+NI GV I+P + NL VKSN+S Sbjct: 733 EVDRSATLDWDALRQKIATDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLS 792 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P+D+K ++ATAFEI+ WL Sbjct: 793 GEFTVINHYLVRDLKKLGLWDDVMVVDLKHFDGSLRPIDRVPNDIKALYATAFEIETSWL 852 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 +E+ SRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT EKST+ Sbjct: 853 VEAGSRRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHAEKSTV 912 Query: 917 KGVDGKLNAVPVTDPN-------------------SSTHSLGIPSSCTSDTECEVCQ 954 + GK+N+V S+T + I D CE CQ Sbjct: 913 QA--GKMNSVSSAPAAAMLGMSAIDKAAAAAQAQMSATPATDIKFCAIDDPGCEACQ 967 >gi|149927166|ref|ZP_01915423.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp. MED105] gi|149824105|gb|EDM83326.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp. MED105] Length = 969 Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/935 (57%), Positives = 696/935 (74%), Gaps = 23/935 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV G + S R++++++ +T V L++ S Sbjct: 31 KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARIRELVEQMTGSVVNALVRRQPS 90 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 I HIEDIQDQVE +LM+SG ++ R YVLYRE R+ RAA+ +++ +M Sbjct: 91 GGIFHIEDIQDQVELALMRSGEAEVARAYVLYRERRAQERAAKQVEQAEQHALN----VM 146 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 D + + L+ ++E A GL ++ + ET KN+YDG+ ++ + I +SR + Sbjct: 147 DGDIKRPLDVEALKALIESAAVGLNEIDVAHLQKETLKNLYDGVKIDEVFKSAILASRAM 206 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE EP+Y VT+R LL +RRE++ ++ EM +YPEYF ++I++G+ A LL Sbjct: 207 IENEPSYTLVTSRLLLHTIRREIIG------REIAQDEMAQVYPEYFPQFIKKGIAAGLL 260 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + FD+ L LKYERD F+YLGLQ LYDRYFLH+ G+RIEMPQAF+MRVAMGLA Sbjct: 261 DNRLAQFDMKKLGAALKYERDLQFDYLGLQTLYDRYFLHVEGTRIEMPQAFYMRVAMGLA 320 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L E ++E RA+EFY +LS+F FM STPTLFNSGT QLSSC+LTT+ DDL I+ ++E Sbjct: 321 LNEVDREARAIEFYEVLSTFDFMSSTPTLFNSGTIRSQLSSCYLTTIGDDLDDIYEGIKE 380 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC Sbjct: 381 NALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 440 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP + D Sbjct: 441 AYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGNWTLFSPSDCPD 500 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHDLYGK FE AY YE +A RG++K+F+ + A LWRK+L+MLFETGHPWITFKDPCNI Sbjct: 501 LHDLYGKAFEKAYVGYEEKAARGDLKLFKTVEAAKLWRKILSMLFETGHPWITFKDPCNI 560 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ---FDYDKLAST 624 RSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL H A+N D++KL T Sbjct: 561 RSPQQHVGVVHSSNLCTEITLNTNENEIAVCNLGSVNLTRHLKPADNGELVLDHEKLQKT 620 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ ALH++ PYAS +AVE AD Sbjct: 621 VGVAMRMLDNVIDINYYAVAKARNSNLRHRPVGMGMMGFQDALHMMRKPYASRDAVEFAD 680 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743 ESME I ++A AS ELA ERGAYS+FKGSLWD+G+ P+DS+ LL E R + ++ +SR Sbjct: 681 ESMEAICYYAYEASTELAAERGAYSTFKGSLWDKGIMPLDSLKLLEEERGGYVEVDTSSR 740 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 + WD L+ R+K GMRNSNC+AIAPTATI+NI GV+ SI+P++QNLYVKSN+SG+FT+VN Sbjct: 741 MDWDALRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPTFQNLYVKSNLSGEFTIVN 800 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 LV +LK+ +WDE MISDLKY DGS+ I+RIP+DLK+++ATAFE+DP WL+E+A+RR Sbjct: 801 EHLVRDLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLYATAFEMDPRWLVEAAARR 860 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQ QSLN+Y+ SGK+LD Y+ AW+ GLKTTYYLR+ AT EKSTL G G+L Sbjct: 861 QKWIDQGQSLNIYMAGVSGKRLDDTYKLAWIRGLKTTYYLRTIGATHAEKSTLAG--GEL 918 Query: 924 NAVPVTDPNSSTHSLG-----IPSSCTSDTECEVC 953 N+V S+ + +P+ + E +VC Sbjct: 919 NSVNAEGGASAAFTSAPATGLVPNLPEQEIEGKVC 953 >gi|300703001|ref|YP_003744603.1| ribonucleoside-diphosphate reductase subunit alpha [Ralstonia solanacearum CFBP2957] gi|299070664|emb|CBJ41959.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum CFBP2957] Length = 987 Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/903 (60%), Positives = 676/903 (74%), Gaps = 17/903 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE RS RA Q+ P L + Sbjct: 97 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQQPAFIGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC+GL D V + +L ET KN+Y+G+ S + + I ++RT Sbjct: 155 DGGITRPLDMAALRNLIVSACAGLGDTVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++ TAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGINAGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++ FDL L L RD F YLGLQ LYDRYFLHI+ RIEMPQAFFMRVAMGL Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD G+ FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKVGRAFEQAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+DKL Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKK 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ ALH+L IPYA+ AV+ A Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANDAAVQFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R L + +S Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLETDLSS 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 749 TMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926 Query: 923 LNA 925 LNA Sbjct: 927 LNA 929 >gi|221213240|ref|ZP_03586215.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD1] gi|221166692|gb|EED99163.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD1] Length = 995 Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/928 (58%), Positives = 682/928 (73%), Gaps = 19/928 (2%) Query: 10 GDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68 G E P+LA P+ +VI+RNG V +F+PSKI+ A+ KAF+AV G + S RV Sbjct: 21 GAEQGAPALA---PQATFADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARV 77 Query: 69 QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128 ++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 78 RELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLE 137 Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYK 187 R + ++D+G + L ++ AC GL V+ +++ET K Sbjct: 138 RQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACEGLGAAVNPDPIVAETVK 197 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ + Sbjct: 198 NLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAD 251 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M Y EYF ++++ GV+A LL + ++ FDL L L RD F YLGLQ LYDRYFL Sbjct: 252 MSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQTLYDRYFL 311 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT Q Sbjct: 312 HVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQ 371 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PF Sbjct: 372 LSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPF 431 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD Sbjct: 432 LKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 491 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV + WTLFSP DLHD +G +FE AY YE + RGEIK+F+KI A LWR Sbjct: 492 LFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKIPAQQLWR 551 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 KML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL Sbjct: 552 KMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNL 611 Query: 608 LAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR +GLG+MG Sbjct: 612 VAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGLGIMG 671 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P Sbjct: 672 FQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILP 731 Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI+NI GVS Sbjct: 732 QDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISNIIGVSAC 791 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + I+RIP DL Sbjct: 792 IEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADL 851 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 + I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTY Sbjct: 852 RAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTY 911 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVT 929 YLR+ +AT VEKST+ G LNAVP + Sbjct: 912 YLRTMAATHVEKSTV--AHGALNAVPTS 937 >gi|17547524|ref|NP_520926.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia solanacearum GMI1000] gi|17429828|emb|CAD16512.1| putative ribonucleoside reductase 1 (large chain) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 987 Score = 1131 bits (2925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/904 (60%), Positives = 677/904 (74%), Gaps = 17/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE RS RA Q+ P L + Sbjct: 97 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQQPAFIGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC+GL + V + +L ET KN+Y+G+ S + + I ++RT Sbjct: 155 DGGITRPLDMAALRNLIVSACAGLGESVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++ TAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAGRYADYFPQFIKRGINAGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++ FDL L L RD F YLGLQ LYDRYFLHI+ RIEMPQAFFMRVAMGL Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD GK FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKVGKAFEAAYLGYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+DKL Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHVVKQADGSYALDHDKLKK 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ ALH+L IPYA+ AV+ A Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALHVLRIPYATDAAVQFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YS++KGSLWD+GV P DS+ LLA+ R L + +S Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGVLPQDSLKLLAQERGGYLEADLSS 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L++R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 749 TMDWDGLRERIQQHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926 Query: 923 LNAV 926 LNAV Sbjct: 927 LNAV 930 >gi|238026166|ref|YP_002910397.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia glumae BGR1] gi|237875360|gb|ACR27693.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia glumae BGR1] Length = 999 Score = 1131 bits (2925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/905 (59%), Positives = 680/905 (75%), Gaps = 16/905 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V +F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V L++ + Sbjct: 39 KVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R RA A + + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERAHSDAPADAPAGAAGINVT- 157 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC GL V+ +++ET KN+YDG+ S + + I ++RT Sbjct: 158 DAGVTRPLDMGALRGLIASACEGLGSAVNPDPIVAETVKNLYDGVPMSQVYDSAILAART 217 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ + EMQ Y EYF ++++ GV+A L Sbjct: 218 MIEKDPAYSQVTARILLHTIRREILG------EEVSQGEMQARYAEYFPQFLKRGVEAEL 271 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDLV L L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL Sbjct: 272 LDDKLLQFDLVRLGEALDAGRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 331 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY++LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 332 ALNEIDREARAIEFYHVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 391 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 392 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 451 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 452 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCP 511 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGE+K+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 512 DLHDKFGAEFEAAYLGYEEKVARGELKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 571 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 572 VRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKR 631 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LHLL P++S AVE A Sbjct: 632 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFSSDAAVEFA 691 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS EL++ERG YSS++GSLWD+G+ P D++ LL E R + ++ +S Sbjct: 692 DRSMEAVCYYAYWASTELSEERGRYSSYRGSLWDRGILPQDTLKLLEEARGGYVEVDMSS 751 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W L++R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNL+VKSN+SG+FTVV Sbjct: 752 SLDWTSLRERISLHGMRNSNCIAIAPTATISNIIGVSPCIEPTFQNLFVKSNLSGEFTVV 811 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 812 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPSDLRAIYATAFEVDPKWLVEAASR 871 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+++ SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+ G Sbjct: 872 RQKWIDQAQSLNIFMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 929 Query: 923 LNAVP 927 LNAVP Sbjct: 930 LNAVP 934 >gi|161525958|ref|YP_001580970.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia multivorans ATCC 17616] gi|221202416|ref|ZP_03575448.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2M] gi|221208124|ref|ZP_03581129.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2] gi|160343387|gb|ABX16473.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans ATCC 17616] gi|221172027|gb|EEE04469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2] gi|221177693|gb|EEE10108.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2M] Length = 995 Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/928 (58%), Positives = 682/928 (73%), Gaps = 19/928 (2%) Query: 10 GDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68 G E P+LA P+ +VI+RNG V +F+PSKI+ A+ KAF+AV G + S RV Sbjct: 21 GAEQGAPALA---PQATFADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARV 77 Query: 69 QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128 ++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 78 RELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLE 137 Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYK 187 R + ++D+G + L ++ AC GL V+ +++ET K Sbjct: 138 RQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACDGLGAAVNPDPIVAETVK 197 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ + Sbjct: 198 NLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAD 251 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M Y EYF ++++ GV+A LL + ++ FDL L L RD F YLGLQ LYDRYFL Sbjct: 252 MSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQTLYDRYFL 311 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT Q Sbjct: 312 HVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQ 371 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PF Sbjct: 372 LSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPF 431 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD Sbjct: 432 LKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 491 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV + WTLFSP DLHD +G +FE AY YE + RGEIK+F+KI A LWR Sbjct: 492 LFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKIPAQQLWR 551 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 KML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL Sbjct: 552 KMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNL 611 Query: 608 LAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR +GLG+MG Sbjct: 612 VAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGLGIMG 671 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P Sbjct: 672 FQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILP 731 Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI+NI GVS Sbjct: 732 QDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISNIIGVSAC 791 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + I+RIP DL Sbjct: 792 IEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADL 851 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 + I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTY Sbjct: 852 RAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTY 911 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVT 929 YLR+ +AT VEKST+ G LNAVP + Sbjct: 912 YLRTMAATHVEKSTV--AHGALNAVPTS 937 >gi|332526549|ref|ZP_08402661.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax benzoatilyticus JA2] gi|332110817|gb|EGJ10994.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax benzoatilyticus JA2] Length = 950 Score = 1130 bits (2923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/935 (59%), Positives = 694/935 (74%), Gaps = 17/935 (1%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 + G Q+I+RNG V +F+P+KI+ A+MKAF+AV G + S V++ + LTE V L++ Sbjct: 27 VSGYQIIRRNGSVVAFEPNKIAVALMKAFLAVHGAQGAASASVRETVDQLTEGVVRALVR 86 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 HIED+QD VE LM+ GHH++ R YVLYRE R+ R+ Q+ + A AP+L Sbjct: 87 SRPGGGTFHIEDVQDHVELGLMRGGHHEVARAYVLYRERRAQERSRQAAAPQPA--APEL 144 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ D G + + L +VE+AC+GL +DV ++ +L+ET +N+YDG+ ++ A I Sbjct: 145 HVV-DGGQRLPLDLDALRSLVEQACAGLGEDVRAEPILAETRRNLYDGVPLDEVYKAAIL 203 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 +SRTLIEK+P Y + TAR LL +RRE+L + P+ M Y EYF Y+ +GV Sbjct: 204 ASRTLIEKDPAYTRATARLLLHTIRREILGADVR-PEA-----MAARYAEYFPAYVRQGV 257 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 +A LL E + FDL L LK ERD F+YLGLQ LYDRYFLH++G RIE+PQAFFMRV Sbjct: 258 QAELLDEELQRFDLARLGAALKPERDLQFDYLGLQTLYDRYFLHVDGRRIELPQAFFMRV 317 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL E ++E RA+EFY++LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ Sbjct: 318 AMGLALNEIDREARAIEFYDVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 377 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 AL+ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR Sbjct: 378 EALKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 437 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 438 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSP 497 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DLHD +G FE AY YER+ADRGEI+ F+++ A LWRKMLTMLFETGHPWITFK Sbjct: 498 SSCPDLHDKFGAAFEQAYVAYERKADRGEIRPFKRLPARDLWRKMLTMLFETGHPWITFK 557 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 D CN+RSPQQHVGVVHSSNLCTEITLN+S+ E AVCNLGSINL H A D KL T Sbjct: 558 DACNLRSPQQHVGVVHSSNLCTEITLNTSAGEIAVCNLGSINLAQHVAGGGIDQAKLKRT 617 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + TA+R+LDNVIDIN + ++KA+ +N HR +GLGLMGFQ L+ L +PYAS AVE AD Sbjct: 618 VSTAMRMLDNVIDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASDAAVEFAD 677 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSR 743 SME + +HA AS ELA+ERG YSS++GSLWD+GV P D++ LLA R + ++R+ Sbjct: 678 RSMEALCYHAYWASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAERGGHVEVDRSET 737 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L W L+ R+ GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+SG+FTVVN Sbjct: 738 LDWAALRARIAVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVN 797 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV +LK+ LWD+ M+ DLK+ DGS+ ++R+PD+LK+++ATAFE+D WL+E+A+RR Sbjct: 798 EYLVRDLKRLGLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLVEAAARR 857 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLN+Y+ SGKKLD IY+ AW GLKTTYYLR+ SAT EKST+ G + Sbjct: 858 QKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKTTYYLRTMSATHAEKSTV--APGAM 915 Query: 924 NAVPVTDPNSSTHSLGIPSS---CTSDT-ECEVCQ 954 NAVP + + S C+ D +CE CQ Sbjct: 916 NAVPRHGGLEAAAAAEPASDVRFCSIDNPDCEACQ 950 >gi|107021672|ref|YP_619999.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia AU 1054] gi|116688618|ref|YP_834241.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia HI2424] gi|170731917|ref|YP_001763864.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia MC0-3] gi|105891861|gb|ABF75026.1| Ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116646707|gb|ABK07348.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia cenocepacia HI2424] gi|169815159|gb|ACA89742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia cenocepacia MC0-3] Length = 1001 Score = 1130 bits (2923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/906 (59%), Positives = 674/906 (74%), Gaps = 16/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGESATGINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L ++ AC GL V+ +++ET KN+YDG+ S + + I ++R Sbjct: 159 VDNGVTRPLDQNALRALIVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDAG 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G +FE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS EAVE Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQEAVEF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R + ++ + Sbjct: 693 ADRSMEAVCYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W L+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 ESLDWTALRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930 Query: 922 KLNAVP 927 LNAVP Sbjct: 931 ALNAVP 936 >gi|189349323|ref|YP_001944951.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia multivorans ATCC 17616] gi|189333345|dbj|BAG42415.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia multivorans ATCC 17616] Length = 997 Score = 1130 bits (2922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/928 (58%), Positives = 682/928 (73%), Gaps = 19/928 (2%) Query: 10 GDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68 G E P+LA P+ +VI+RNG V +F+PSKI+ A+ KAF+AV G + S RV Sbjct: 23 GAEQGAPALA---PQATFADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARV 79 Query: 69 QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128 ++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 80 RELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLE 139 Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYK 187 R + ++D+G + L ++ AC GL V+ +++ET K Sbjct: 140 RQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACDGLGAAVNPDPIVAETVK 199 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ + Sbjct: 200 NLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAD 253 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M Y EYF ++++ GV+A LL + ++ FDL L L RD F YLGLQ LYDRYFL Sbjct: 254 MSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQTLYDRYFL 313 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT Q Sbjct: 314 HVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQ 373 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PF Sbjct: 374 LSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPF 433 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD Sbjct: 434 LKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 493 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV + WTLFSP DLHD +G +FE AY YE + RGEIK+F+KI A LWR Sbjct: 494 LFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKIPAQQLWR 553 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 KML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL Sbjct: 554 KMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNL 613 Query: 608 LAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR +GLG+MG Sbjct: 614 VAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGLGIMG 673 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P Sbjct: 674 FQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILP 733 Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI+NI GVS Sbjct: 734 QDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISNIIGVSAC 793 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + I+RIP DL Sbjct: 794 IEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADL 853 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 + I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTY Sbjct: 854 RAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTY 913 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVT 929 YLR+ +AT VEKST+ G LNAVP + Sbjct: 914 YLRTMAATHVEKSTV--AHGALNAVPTS 939 >gi|83649536|ref|YP_437971.1| ribonucleotide-diphosphate reductase subunit alpha [Hahella chejuensis KCTC 2396] gi|83637579|gb|ABC33546.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC 2396] Length = 953 Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/929 (58%), Positives = 687/929 (73%), Gaps = 8/929 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G FD KI+ A+ KAF+AVEG+ AS S RV+D ++ L + V RL + + Sbjct: 30 LQVIKRTGQAAPFDDRKIAMAVTKAFLAVEGQSASGSPRVRDSVEKLVKDIVARLRRRSP 89 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 VHIE+IQD VE LM+ G HK+ R YVLYREE + RA + S+ P + + Sbjct: 90 EGGSVHIEEIQDLVELGLMRGGFHKVARAYVLYREEHARQRAP-APSEQSGETHPDINVK 148 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ N RL ++ +AC+ L VS + VL KN+Y+G+ D+ AL+ ++R Sbjct: 149 FADGSEAPLNMGRLRTVISDACADLDGVSEEKVLQGALKNLYNGVKHKDVNAALVMAARP 208 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIE+EPNY+ V AR LL+ LR E L+ + AT EM LYP F +E V+ L Sbjct: 209 LIEEEPNYSYVCARLLLDGLREESLSYL-NIAASATEGEMAELYPTAFRAIVERCVEHEL 267 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ FDL L LK ERD YLGLQ LYDRYF+H +R+E+PQAFFMRVAMGL Sbjct: 268 LSPELLKFDLERLGAALKPERDRQLTYLGLQTLYDRYFIHWRETRLELPQAFFMRVAMGL 327 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +++E + RA+EFY+LLSSF +MCSTPTLFN+GT PQLSSC+LTTVPDDL GI+GA++ Sbjct: 328 SVQEDDPNARAIEFYDLLSSFDYMCSTPTLFNAGTNRPQLSSCYLTTVPDDLEGIYGAIK 387 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 388 DNALLSKWAGGLGNDWTPVRSLGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 447 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMN+ANWIPDLFMKRV ++ WTLFSP + Sbjct: 448 CAYLESWHLDIEEFLELRKNTGDERRRTHDMNSANWIPDLFMKRVFEDKEWTLFSPSDAP 507 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDLYG FE Y +YE + G I +F+K+ A LWRKML+MLFETGHPW+TFKDPCN Sbjct: 508 DLHDLYGSAFEARYTHYESLVESGAITLFKKVPAQNLWRKMLSMLFETGHPWVTFKDPCN 567 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+ H N + D+D+L +T+ TA Sbjct: 568 LRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLVNHIRNGEIDHDRLRNTVYTA 627 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +A+ +N HR +G+GLMGFQ AL+ L +PY+S EAV AD+SME Sbjct: 628 VRMLDNVIDINYYAVPQARNANLRHRPVGMGLMGFQDALYKLGLPYSSVEAVRFADQSME 687 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPW 746 IS+ AI+AS LA+ERG Y +++GSLWDQGV PIDS+ L + R + ++R L W Sbjct: 688 LISYFAITASSNLAKERGRYETYEGSLWDQGVLPIDSLDRLEQERGAEFCTLDRGHSLDW 747 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +++ VK GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTV+N +L Sbjct: 748 APVRELVKKQGMRNSNVMAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVINPWL 807 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V ELK RDLWD M++DLKY DGS+ I+RIP+D+K++ TAFEIDP WL+E+ASRRQKW Sbjct: 808 VQELKARDLWDSVMVNDLKYFDGSVAQIDRIPEDVKQLFLTAFEIDPRWLVEAASRRQKW 867 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQ QSLNLY+ EPSGKKLD +Y+ AW GLKTTYYLRS AT +EK + G NA Sbjct: 868 IDQGQSLNLYMAEPSGKKLDNLYKLAWSRGLKTTYYLRSLGATQMEKIS-SGASQSDNAK 926 Query: 927 PVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 P D + + + P C+ D +CE CQ Sbjct: 927 P--DVDDTENQEPQPKFCSILDPDCEACQ 953 >gi|78065155|ref|YP_367924.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia sp. 383] gi|77965900|gb|ABB07280.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383] Length = 998 Score = 1129 bits (2920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/906 (60%), Positives = 676/906 (74%), Gaps = 16/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASTGINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L +V AC GL V+ +++ET KN+YDG+ S + + I ++R Sbjct: 159 VDNGVTRPLDLNALRALVVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VT+R LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 219 TMIEKDPAYSQVTSRILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDAG 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQF--DYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH A+ F D+DKL Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLVKQADGSFALDHDKLK 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AV Sbjct: 633 RTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVAF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R + ++ + Sbjct: 693 ADRSMEAVCYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W L+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 ESLDWTSLRSRIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930 Query: 922 KLNAVP 927 LNAVP Sbjct: 931 ALNAVP 936 >gi|254253305|ref|ZP_04946623.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158] gi|124895914|gb|EAY69794.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158] Length = 997 Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/908 (60%), Positives = 676/908 (74%), Gaps = 20/908 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V LL+ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTRNVVRALLRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASSGINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L ++ AC GL V+ + +++ET KN+YDG+ S + + I ++R Sbjct: 159 VDNGVTRPLDLNALRALIVSACDGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF +++ GV+A Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQSEMSTRYAEYFPQFLRRGVEAG 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 333 LSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKFGAEFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGSYALDHDKLK 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD---ELAMN 739 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R E+ M+ Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDMS 752 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T L W L+ R+ T GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+F Sbjct: 753 ET--LDWAALRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEF 810 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 TVVN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+ Sbjct: 811 TVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEA 870 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL G KTTYYLR+ +AT VEKST+ Sbjct: 871 ASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGKKTTYYLRTMAATHVEKSTV--A 928 Query: 920 DGKLNAVP 927 G LNAVP Sbjct: 929 HGALNAVP 936 >gi|325528899|gb|EGD05935.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia sp. TJI49] Length = 963 Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/907 (59%), Positives = 673/907 (74%), Gaps = 17/907 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVDQLTHNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A ++ Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAVAGGEAAGGVIN 158 Query: 149 -MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 +D+G + L +V AC GL V+ +++ET KN+YDG+ S + + I ++ Sbjct: 159 VVDNGVTRPLDLNALRALVVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAA 218 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RT+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 219 RTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDA 272 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL + ++ FDL L + L RD F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAM Sbjct: 273 GLLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVGGTRIEMPQAFFMRVAM 332 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ A Sbjct: 333 GLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEA 392 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 393 LKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 452 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 453 AVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPST 512 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDP Sbjct: 513 CPDLHDKFGAEFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDP 572 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621 CNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 573 CNIRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKL 632 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 633 KRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVE 692 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R + ++ Sbjct: 693 FADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDS 752 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FT Sbjct: 753 SESLDWTALRARIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 812 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+A Sbjct: 813 VVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAA 872 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ Sbjct: 873 SRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AH 930 Query: 921 GKLNAVP 927 G LNAVP Sbjct: 931 GALNAVP 937 >gi|207721466|ref|YP_002251906.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia solanacearum MolK2] gi|206586626|emb|CAQ17212.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia solanacearum MolK2] Length = 987 Score = 1128 bits (2918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/904 (60%), Positives = 675/904 (74%), Gaps = 17/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE RS RA Q+ P L + Sbjct: 97 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQPPAFIGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC+GL D V + +L ET KN+Y+G+ S + + I ++RT Sbjct: 155 DGGITRPLDMVALRNLIVSACAGLGDAVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++ TAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGINAGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++ FDL L L RD F YLGLQ LYDRYFLHI+ RIEMPQAFFMRVAMGL Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD G+ FE AY YE + RGEI +F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKVGRAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+DKL Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKK 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+R A+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ ALH+L IPYA+ AV+ A Sbjct: 629 TVRIAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANEAAVQFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R L + +S Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLEADLSS 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 749 TMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926 Query: 923 LNAV 926 LNAV Sbjct: 927 LNAV 930 >gi|83746811|ref|ZP_00943859.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia solanacearum UW551] gi|207744362|ref|YP_002260754.1| ribonucleoside reductase 1 (large chain) (partial sequence n terminus) protein [Ralstonia solanacearum IPO1609] gi|83726580|gb|EAP73710.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia solanacearum UW551] gi|206595767|emb|CAQ62694.1| ribonucleoside reductase 1 (large chain) (partial sequence n terminus) protein [Ralstonia solanacearum IPO1609] Length = 987 Score = 1128 bits (2918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/904 (60%), Positives = 676/904 (74%), Gaps = 17/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE RS RA Q+ P L + Sbjct: 97 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQPPAFIGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC+GL D V + +L ET KN+Y+G+ S + + I ++RT Sbjct: 155 DGGITRPLDMVALRNLIVSACAGLGDAVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++ TAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGINAGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++ FDL L L RD F YLGLQ LYDRYFLHI+ RIEMPQAFFMRVAMGL Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY+LLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAIEFYHLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD G+ FE AY YE + RGEI +F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKVGRAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+DKL Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKK 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+R A+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ ALH+L IPYA+ AV+ A Sbjct: 629 TVRIAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANEAAVQFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R L + +S Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLEADLSS 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 749 TMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926 Query: 923 LNAV 926 LNAV Sbjct: 927 LNAV 930 >gi|134294682|ref|YP_001118417.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia vietnamiensis G4] gi|134137839|gb|ABO53582.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia vietnamiensis G4] Length = 996 Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/906 (59%), Positives = 676/906 (74%), Gaps = 16/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV+++++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTHNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGAESNTGINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L ++ AC GL V++ +++ET KN+YDG+ S + + I ++R Sbjct: 159 VDNGVTRPLDMNALRALIVSACDGLGTAVNADPIVAETVKNLYDGVPMSQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ +M Y EYF ++++ GV A Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQADMSARYAEYFPQFLKRGVDAG 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + + WTLFSP Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGSDWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G +FE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R + ++ + Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 ESLDWSTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930 Query: 922 KLNAVP 927 LNAVP Sbjct: 931 ALNAVP 936 >gi|171318521|ref|ZP_02907673.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria MEX-5] gi|171096307|gb|EDT41213.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria MEX-5] Length = 1001 Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/906 (59%), Positives = 675/906 (74%), Gaps = 16/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASAGINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L ++ AC+GL V+ + +++ET KN+YDG+ S + + I ++R Sbjct: 159 VDNGVTRPLDMNALRELIVSACAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMSTRYTEYFPQFLKRGVDAG 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G +FE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R + ++ + Sbjct: 693 ADRSMEAVCYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 ESLDWTALRARIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930 Query: 922 KLNAVP 927 LNAVP Sbjct: 931 ALNAVP 936 >gi|299065647|emb|CBJ36819.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum CMR15] Length = 987 Score = 1125 bits (2911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/904 (60%), Positives = 674/904 (74%), Gaps = 17/904 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ + Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE +LM+SG H + R YVLYRE RS RA Q+ P L + Sbjct: 97 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQQPAFIGLNVT- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++ AC+ L + V + +L ET KN+Y+G+ S + + I ++RT Sbjct: 155 DGGITRPLDMAALRNLIVSACADLGESVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y++ TAR LL +RRE+L ++ T EM Y +YF ++I+ G+ A L Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAGRYADYFPQFIKRGINAGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + + FDL L L RD F YLGLQ LYDRYFLHI+ RIEMPQAFFMRVAMGL Sbjct: 269 LDDKLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISEKRIEMPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RAVEFY LLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 329 SLNEIDREARAVEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD G+ FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN Sbjct: 509 DLHDKVGRAFEAAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 IRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+DKL Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHVVKQADGSYALDHDKLKK 628 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ +LH+L IPYA+ AV+ A Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDSLHVLRIPYATDAAVQFA 688 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YS++KGSLWD+GV P DS+ LLA+ R L + +S Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGVLPQDSLKLLAQERGGYLEADLSS 748 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+FTVV Sbjct: 749 TMDWDGLRARIQQHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ASR Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT VEKST+ G Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926 Query: 923 LNAV 926 LNAV Sbjct: 927 LNAV 930 >gi|170699975|ref|ZP_02891002.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria IOP40-10] gi|170135123|gb|EDT03424.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria IOP40-10] Length = 999 Score = 1125 bits (2910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/905 (59%), Positives = 672/905 (74%), Gaps = 15/905 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A ++ Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAGGEASAGINVV 158 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + L ++ AC+GL V+ + +++ET KN+YDG+ S + + I ++RT Sbjct: 159 DNGVTRPLDMNALRELIVSACAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAART 218 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A L Sbjct: 219 MIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMSTRYTEYFPQFLKRGVDAGL 272 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + ++ FDL L L RD F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMGL Sbjct: 273 LDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGL 332 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL+ Sbjct: 333 SLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALK 392 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 393 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGTDWTLFSPSTCP 512 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPCN Sbjct: 513 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 +RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKR 632 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE A Sbjct: 633 TISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFA 692 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742 D SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 693 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSE 752 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVV Sbjct: 753 SLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+ASR Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASR 872 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930 Query: 923 LNAVP 927 LNAVP Sbjct: 931 LNAVP 935 >gi|206561766|ref|YP_002232531.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia J2315] gi|198037808|emb|CAR53752.1| putative ribonucleoside reductase [Burkholderia cenocepacia J2315] Length = 1003 Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/906 (59%), Positives = 673/906 (74%), Gaps = 16/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V L++ + Sbjct: 41 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 101 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGESTTGINV 160 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L ++ AC GL V+ +++ET KN+YDG+ S + + I ++R Sbjct: 161 VDNGVTRPLDLNALRALIVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAAR 220 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 221 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDAG 274 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG Sbjct: 275 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 334 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 335 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 394 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 395 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 454 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 455 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 514 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G +FE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 515 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 574 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 575 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 634 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 635 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 694 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 695 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 754 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 755 ESLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 814 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 815 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 874 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 875 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 932 Query: 922 KLNAVP 927 LNAVP Sbjct: 933 ALNAVP 938 >gi|115350551|ref|YP_772390.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia ambifaria AMMD] gi|115280539|gb|ABI86056.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria AMMD] Length = 999 Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/906 (59%), Positives = 674/906 (74%), Gaps = 16/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASAGINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L ++ +C+GL V+ + +++ET KN+YDG+ S + + I ++R Sbjct: 159 VDNGVTRPLDMNALRELIVSSCAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMTTRYTEYFPQFLKRGVDAG 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D+DKL Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 ESLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930 Query: 922 KLNAVP 927 LNAVP Sbjct: 931 ALNAVP 936 >gi|158341283|ref|YP_001522353.1| ribonucleotide-diphosphate reductase subunit alpha [Acaryochloris marina MBIC11017] gi|158311524|gb|ABW33135.1| ribonucleotide-diphosphate reductase, alpha subunit [Acaryochloris marina MBIC11017] Length = 960 Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/931 (58%), Positives = 686/931 (73%), Gaps = 24/931 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V F+ KI+ A+ KAF+AV+G + S RV++++ LT VT L + + Sbjct: 31 KVIRRNGSVVGFEADKIAIAMTKAFLAVKGVQSGVSARVRELVATLTTNVVTALKRRQPT 90 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+SG H + R YVLYRE+RS R Q H API +M Sbjct: 91 GGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRSQKRT-QQHGIEAAPI-----YLM 144 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + + +R +V+ AC L D VS K + E KN+YDG S +L + I ++R+ Sbjct: 145 DGGDRVLLDLERFNDLVDSACINLGDTVSGKAIADEALKNIYDGASVVELHKSAILAARS 204 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IEK+P+Y+KVTAR LL ++R+EVL + T EMQ Y EYF +I++G+ L Sbjct: 205 HIEKDPDYSKVTARLLLHRIRQEVLGA------EVTQAEMQARYAEYFPHFIQQGIATGL 258 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E + F+L L + L ERD F YLGLQ LYDRYFLH RIE+PQAFFMRVAMGL Sbjct: 259 LDEKLAQFNLQKLGSVLVAERDLQFGYLGLQTLYDRYFLHTEDRRIELPQAFFMRVAMGL 318 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E+RA EFY++LS F FM STPTLFNSGT QLSSC+LTTVPD L GI+ A++ Sbjct: 319 ALNEIDREERAAEFYDILSKFDFMSSTPTLFNSGTVRSQLSSCYLTTVPDALDGIYSAIK 378 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 379 DNALLSKYAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 438 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHD+NTANWIPDLFMKRV ++ WTLFSPD V Sbjct: 439 CAYLETWHLDIEEFLELRKNTGDDRRRTHDINTANWIPDLFMKRVMEDGDWTLFSPDIVP 498 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD GKEFE AY YE+QA +GE+K F+ + A LWRKML+MLFETGHPWITFKDPCN Sbjct: 499 DLHDKVGKEFETAYLAYEQQAAKGELKPFKTVPANTLWRKMLSMLFETGHPWITFKDPCN 558 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLAST 624 +RSPQQH+G+VHSSNLCTE+TLN++ E AVCNLGS+NL+ H Q D KL T Sbjct: 559 VRSPQQHIGMVHSSNLCTEVTLNTNENEIAVCNLGSVNLVNHMVEKNGQMQLDQAKLQHT 618 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I A+R+LDNVID+N + + A+ SN HR +GLG+MGFQ LH L +PYAS +AV+ AD Sbjct: 619 ITIAMRMLDNVIDLNYYAVSTARNSNLKHRPVGLGIMGFQDCLHQLRLPYASQDAVDFAD 678 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSR 743 +ME + ++A AS ELAQERG YS++KGSLWD+G+ P D++ LL EVR ++ +S Sbjct: 679 RAMEAVCYYAYWASTELAQERGRYSTYKGSLWDRGILPQDTLALLKEVRGGFVEVDESST 738 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 + WD L+ R+ GMRNSNC+AIAPTATIANI GVS I+P+YQNLYVKSN+SG+FTVVN Sbjct: 739 MDWDLLRDRIAQHGMRNSNCVAIAPTATIANIIGVSACIEPTYQNLYVKSNLSGEFTVVN 798 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV +LK R+LWDE MI+DLKY DGS+ I+RIP +L++++ATAFE++P W++E+A+RR Sbjct: 799 EYLVRDLKVRELWDEVMIADLKYFDGSLAKIDRIPPELRQLYATAFEVEPNWIVEAAARR 858 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 KWIDQAQSLN+Y+ SGKKLD IY+ AW GLKTTYYLRS AT VEKST L Sbjct: 859 SKWIDQAQSLNIYMAGASGKKLDQIYKLAWQRGLKTTYYLRSLGATHVEKSTAPA--SSL 916 Query: 924 NAVPVTDPNSSTHSLG-IPSSCTSDTECEVC 953 NAV N S++ +G I ++ S+ +VC Sbjct: 917 NAV---SNNGSSNGIGNILTTSKSENLGQVC 944 >gi|172059583|ref|YP_001807235.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia ambifaria MC40-6] gi|171992100|gb|ACB63019.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria MC40-6] Length = 999 Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/906 (59%), Positives = 673/906 (74%), Gaps = 16/906 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKI+ A+ KAF+AV G + S RV++ ++ LT V L++ + Sbjct: 39 KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148 HIEDIQDQVE +LM+ G H + R YVLYRE+R R + A I + Sbjct: 99 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASAGINV 158 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +D+G + L ++ AC+GL V+ + +++ET KN+YDG+ S + + I ++R Sbjct: 159 VDNGVTRPLDMNALRELIVSACAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+IEK+P Y++VTAR LL +RRE+L ++ EM Y EYF ++++ GV A Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMATRYTEYFPQFLKRGVDAG 272 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + ++ FDL L L RD F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ AL Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G EFE AY YE + RGEIK+F+KI A LWRKML MLFETGHPWITFKDPC Sbjct: 513 PDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622 N+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D DKL Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDQDKLK 632 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LHLL PYAS AVE Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R + ++ + Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 752 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 753 ESLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+R LWDE M++DLKY DG + I+RIP DL+ I+ATAFE+DP WL+E+AS Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+ G Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930 Query: 922 KLNAVP 927 LNAVP Sbjct: 931 ALNAVP 936 >gi|91787005|ref|YP_547957.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas sp. JS666] gi|91696230|gb|ABE43059.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666] Length = 969 Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/899 (58%), Positives = 682/899 (75%), Gaps = 13/899 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+P+KI+ A+MKAF+AV G + S V++ + LT+ + L++ Sbjct: 35 QIIRRNGSVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRETVDGLTQAVIRALMRSRPG 94 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE LM+ GHH+I R YVLYRE+RS RA Q ++ AP AP L + Sbjct: 95 GGTFHIEDVQDQVELGLMRGGHHEIARAYVLYREKRSQERARQP--QTPAPEAPMLHVT- 151 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G ++ + + L+ ++E +C+ L DV +++ET +N+YDG+ ++ A I ++RT Sbjct: 152 DGGQRVALDVRNLQALIEASCANLGADVKPDPIVAETMRNLYDGVPIDEVYKASILAART 211 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR L+ +RREVL ++ + EM Y EYF ++I +GV+ L Sbjct: 212 LIEKDPDYTYATARLLMHTIRREVLG------EEVSQEEMHSRYAEYFPKFIAKGVQNEL 265 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E + FDL L LK ERD F+YLGLQ L+DRYFLH+ RIE+PQAFFMRVAMGL Sbjct: 266 LDEKLQQFDLARLGAALKPERDLKFDYLGLQTLFDRYFLHVRKQRIELPQAFFMRVAMGL 325 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY +LSSF FM STPTLFN+GT QLSSC+LTTV DDL GI+ A++ Sbjct: 326 SLGEIDREARAIEFYEILSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVADDLGGIYDAIK 385 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 386 ENALLSKFAGGLGNDWTPVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 445 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP + Sbjct: 446 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSDTP 505 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +GKEFE Y YE +A+RGEIK RK+ A +WRKML+MLFETGHPWITFKD CN Sbjct: 506 DLHDKFGKEFEKIYTAYEARAERGEIKPARKLQATDMWRKMLSMLFETGHPWITFKDACN 565 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NL+ H + D+DKL TI TA Sbjct: 566 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHLKDGAIDHDKLKKTITTA 625 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ L+ L +PYAS EAVE AD+SME Sbjct: 626 MRMLDNVIDINYYAVKKARDSNMRHRPVGLGIMGFQDCLYELRVPYASQEAVEFADKSME 685 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 + +HA AS ELA+ERG Y+S+KGSLWD+G+ P+D++ +LAE R + ++R++ L WD Sbjct: 686 AVCYHAYWASTELAKERGKYASYKGSLWDKGILPLDTLDMLAEERGGYVEVDRSATLDWD 745 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L++++ GMRNSNC+AIAPTATI+NI GV I+P + NL VKSN+SG+FTV+N +LV Sbjct: 746 ALRQKIAQDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINHYLV 805 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK+ LWD+ M+ DLK+ DGS+ ++R+P ++K ++ATAFE++ W++E+A+RRQKWI Sbjct: 806 RDLKRLGLWDDVMVVDLKHFDGSLRPVDRVPQEIKALYATAFEVETSWIVEAAARRQKWI 865 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 DQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT EKST+K GK+N+V Sbjct: 866 DQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHAEKSTVKA--GKMNSV 922 >gi|30250347|ref|NP_842417.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas europaea ATCC 19718] gi|30181142|emb|CAD86335.1| Ribonucleotide reductase large subunit [Nitrosomonas europaea ATCC 19718] Length = 955 Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/931 (57%), Positives = 697/931 (74%), Gaps = 17/931 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V +F+P KIS A+ KAF+AV G ++ S +++I+ LT + V L + Sbjct: 36 KIIRRNGAVVAFEPGKISIALTKAFIAVRGGQSAASSSMREIVAQLTGEVVHALTRRRPE 95 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148 HIEDIQDQVE +LM+SG H I R YVLYREER+ RA Q +S P + ++ ++ Sbjct: 96 GGTFHIEDIQDQVELALMRSGDHDIARAYVLYREERARERARQ---QSAQPASGQVAVLH 152 Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSS 206 +++G I + +L +E AC L + V + +++ K++YDG+ ++ + I S+ Sbjct: 153 VVENGQKIPLDPAQLMARIESACQNLGNTVDAALIVKSMLKDLYDGVPAEEVRKSAILSA 212 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 R LIEKEP Y+ VTAR LL+ +R EVL ++ H MQ Y EYF ++ +G++A Sbjct: 213 RALIEKEPAYSFVTARLLLDNIRYEVLG------EEVAHEAMQSRYAEYFPEFVRKGIEA 266 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL E + FDL L+ L +RD F YLGLQ LYDRYFLH++ RIE+PQ FFMRVAM Sbjct: 267 GLLDERLGQFDLARLSEALAADRDLQFGYLGLQTLYDRYFLHVSERRIELPQIFFMRVAM 326 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E ++E RA+EFY+LLS F FM STPTLFNSGTR QLSSC+L+TVPD L GI+ A Sbjct: 327 GLALNEIDREARAIEFYHLLSKFDFMSSTPTLFNSGTRRSQLSSCYLSTVPDSLDGIYEA 386 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 ++ENA+L+K++GGLGNDWTPVR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGGKRKG Sbjct: 387 IKENALLSKFAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKG 446 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKR+ ++ WTLFSP + Sbjct: 447 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDLFMKRMQEDQEWTLFSPSD 506 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHD +G+ FE AY YE QA +G + +F++I A LWRKMLTMLFETGHPWITFKDP Sbjct: 507 TPDLHDKFGRAFEEAYIAYEEQAAQGRLTLFKRIPARQLWRKMLTMLFETGHPWITFKDP 566 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CNIRSPQ HVGVVHSSNLCTEITLN+S +E AVCNLGS+NLLAH + + D +L T+ Sbjct: 567 CNIRSPQNHVGVVHSSNLCTEITLNTSEKEIAVCNLGSVNLLAHIVDGKLDQARLKQTVT 626 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ LH L I YASPEAVE AD S Sbjct: 627 TAMRMLDNVIDINFYAVAKARNANFRHRPVGLGIMGFQDCLHKLGISYASPEAVEFADRS 686 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLP 745 ME +++H AS ELA+ERG Y++++GSLWD+G+ P D++ LL E R + ++ +S Sbjct: 687 MEAVAYHTYWASTELAEERGTYATYRGSLWDRGILPQDTLELLREERGGHVEIDTSSTQD 746 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ R++ GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FTVVN + Sbjct: 747 WDALRDRIRQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTVVNQW 806 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LVN+LK++DLWDE MI+DLK++DG++ I+R+P++L+ ++ATAFE+DP WL+E+ASRRQK Sbjct: 807 LVNDLKKQDLWDEVMIADLKHYDGAVSKIDRVPENLRNLYATAFEVDPRWLVEAASRRQK 866 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ SGKK+D +YR AWL GLKTTYYLR+ AT+ EKST+ G LNA Sbjct: 867 WIDQAQSLNLYMAGASGKKMDELYRLAWLRGLKTTYYLRALGATTAEKSTVH--TGTLNA 924 Query: 926 VPVT-DPNSSTHSLGIPSSCTSDT-ECEVCQ 954 VP + ++ + P C D ECE CQ Sbjct: 925 VPAQHEAHAGNLAHSAPQQCAIDNPECEACQ 955 >gi|114321251|ref|YP_742934.1| ribonucleoside-diphosphate reductase, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227645|gb|ABI57444.1| ribonucleoside-diphosphate reductase, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 928 Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/927 (58%), Positives = 692/927 (74%), Gaps = 18/927 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QVI+RNG +T+FDP KI A+ KAF+AVEG+ ++ + R+Q + LT Q V + L + Sbjct: 18 QVIRRNGALTAFDPDKIQLAMKKAFLAVEGERSADAARIQQVTAELTAQVV-QALTRRPT 76 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 A +HIEDIQDQVE +LM++G HK+ R YVLYREE + R ++ +D P P+L + Sbjct: 77 ATPIHIEDIQDQVELALMRAGEHKVARAYVLYREEHARKRRQEA---TDEP--PRLHMTR 131 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG + + L ++ AC L D + V E ++N+YDG++E ++ ALI S+R+L Sbjct: 132 TDGEQVPLDESLLRRVLHHACHELADTDPERVAREAWRNLYDGVTEQEVHKALILSARSL 191 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE+EP Y V AR L +L E L + A + Y +YF RYI GV+ LL Sbjct: 192 IEQEPAYGHVAARLLQHQLNGEALRFLDFPYDGAPGADPG--YTDYFARYIRRGVELELL 249 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 E ++ FDL LA L ERD F YLGLQ LYDRY H +G+R E+PQAFFMRVAMGL Sbjct: 250 DEQLLTFDLERLAEALMPERDLQFNYLGLQTLYDRYLQHWDGTRFELPQAFFMRVAMGLT 309 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L+E E+E+RA+EFY LLSSF FM STPTLFNSGTR PQLSSC+LT+VPDDL GI+GA+++ Sbjct: 310 LQEVEREERAIEFYRLLSSFDFMSSTPTLFNSGTRRPQLSSCYLTSVPDDLGGIYGAIRD 369 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+L+K++GGLGNDWT VR +GAHI GTNG+SQGV+PFLKVA+DTAVAVNQGGKRKGAVC Sbjct: 370 NALLSKFAGGLGNDWTRVRAMGAHIKGTNGRSQGVVPFLKVASDTAVAVNQGGKRKGAVC 429 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTA+W+PDLFM+R +A WTLFSPD+ + Sbjct: 430 AYLETWHLDVEEFLELRKNTGDDRRRTHDMNTAHWVPDLFMQRAEADADWTLFSPDDAAH 489 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LH+LYG+ F+ AYE+ E +A RGEI+ ++ +SA LWR+ML MLFETGHPWITFKDPCN+ Sbjct: 490 LHELYGQAFKAAYEDLEARAARGEIRNYKVVSAKQLWRRMLGMLFETGHPWITFKDPCNL 549 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGS+NL AH + D+++L +T+RTA+ Sbjct: 550 RSPQQHAGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLAAHTTPDGLDHERLRNTVRTAM 609 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVIDIN +++ +A+++N HR +GLG+MGFQ AL+ +PYAS EAV AD S E Sbjct: 610 RMLDNVIDINYYSVPQARRANLRHRPVGLGVMGFQDALYAQDLPYASDEAVAFADRSQEA 669 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDE 748 IS++AI AS +LA+ERGAY SF+GSLW +G P+DSI + E RD + M+ +S L W Sbjct: 670 ISYYAIEASADLARERGAYPSFEGSLWQRGELPLDSIQRVVEARDGDCTMDTSSSLDWAA 729 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+++V+T GMRNSNC+AIAPTATIANI GVSQ I+P+++NLYVKSN+SG+FTVVN LV Sbjct: 730 LREKVRT-GMRNSNCLAIAPTATIANIVGVSQGIEPAFKNLYVKSNLSGEFTVVNPALVR 788 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 LK LWD M++DLKY+DGS+ I R+P++LK+ ATAFE+D WL+++ SRRQKW+D Sbjct: 789 ALKAYGLWDAVMVNDLKYYDGSVQPIGRVPEELKQRFATAFELDSEWLVQAGSRRQKWLD 848 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG-KLNAVP 927 Q+QSLNLY+ EPSG KLD +YRQAW +GLKTTYYLRS AT VEKST+ +LNAV Sbjct: 849 QSQSLNLYMAEPSGPKLDALYRQAWRLGLKTTYYLRSTGATQVEKSTMDPARANRLNAV- 907 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 S G S D ECE CQ Sbjct: 908 ------SAAPGGGQSCSVDDPECEACQ 928 >gi|239813963|ref|YP_002942873.1| ribonucleotide-diphosphate reductase subunit alpha [Variovorax paradoxus S110] gi|239800540|gb|ACS17607.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax paradoxus S110] Length = 971 Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/954 (56%), Positives = 702/954 (73%), Gaps = 31/954 (3%) Query: 21 PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80 P + + Q+I+RNG V F+P+KI+ A+MKAF+AV G + S V++ + LT+ + Sbjct: 29 PAGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQGAASASVRETVDALTQGVI 88 Query: 81 TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140 +++ HIED+QDQVE LM+ GHH+I R YVLYRE R+ R+ Q + +AP Sbjct: 89 RAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERSKQV--EQEAP 146 Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLE 199 P L ++ D+G ++ + +L+ ++E AC L D +++ +++ET +N+YDG+ ++ Sbjct: 147 ATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPIVAETMRNLYDGVPLDEVY 205 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 A I ++RTLIEK+P+Y TAR LL + +E++ ++AT Y +YF ++ Sbjct: 206 KASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPAERAT------AYADYFPQF 259 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 I++GV+ LL E ++ +DL L LK ERD F+YLGLQ LYDRYFLH+ SRIE+PQA Sbjct: 260 IKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTLYDRYFLHVRKSRIELPQA 319 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+GT QLSSC+LTTVPDD Sbjct: 320 FFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVPDD 379 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVN Sbjct: 380 LDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVN 439 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + W Sbjct: 440 QGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTW 499 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLFSP V DLHDL+G +FE AY YE +A RGEIK R I A LWRKMLTMLFETGHP Sbjct: 500 TLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQASDLWRKMLTMLFETGHP 559 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 WITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NLL H + + D + Sbjct: 560 WITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGKVDQE 619 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL TI TA+R+LDNVIDIN + ++KA+ SN HR +GLGLMGFQ AL+ L IPYAS EA Sbjct: 620 KLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLMGFQDALYELRIPYASQEA 679 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738 V+ ADESME I +HA AS ELA+ERG YSS+KGSLWD+G+ PID++ LL + R + + Sbjct: 680 VQFADESMEAICYHAYWASTELARERGKYSSYKGSLWDKGILPIDTLDLLEKARGGYVEV 739 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +R++ L W+ L++++K GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+SG+ Sbjct: 740 DRSATLDWEALRQKIKADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGE 799 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P D+K ++ATAFE++ WL+E Sbjct: 800 FTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVETTWLVE 859 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR++SAT EKST++ Sbjct: 860 AAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHAEKSTVQS 919 Query: 919 VDGKLNAVPVTDPNSSTHS-------------LGIPSS----C-TSDTECEVCQ 954 G+LNAV SS S +P++ C D CE CQ Sbjct: 920 --GRLNAVSSGSDASSGMSALEAAAAAAKAQMSAMPATDIAFCGVDDPTCEACQ 971 >gi|294339030|emb|CAZ87377.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside diphosphate reductase, alpha subunit) (Ribonucleotide reductase large subunit) [Thiomonas sp. 3As] Length = 974 Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/947 (57%), Positives = 684/947 (72%), Gaps = 31/947 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV+G + S +++ + LTE V LL+ S Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVRALLRSRPS 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE SLM++G H++ R YVLYRE R+ RA Q + AP L ++ Sbjct: 97 GGTFHIEDIQDQVELSLMRTGQHEVARAYVLYRERRTQERAKQKAAAEQQESAPVLHVL- 155 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++E AC L DV + +++ET +N+YDG+ ++ A I +SRT Sbjct: 156 DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYKAAILASRT 215 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIE++P+Y+KVTAR LL +RRE L + +M Y EYF R I+EGV+ L Sbjct: 216 LIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCIKEGVELEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--------HINGSRIEMPQAF 320 L E + FDL L LK ERD F+YLGLQ LYDRYFL + +G RIE+PQAF Sbjct: 270 LDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELPQAF 329 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR QLSSC+LTTV DDL Sbjct: 330 FMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVADDL 389 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQ Sbjct: 390 DGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQ 449 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV + WT Sbjct: 450 GGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGGDWT 509 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP +V DLHD +GK+FE AY YE++A GEIK+F+ + AV LWRKML+MLFETGHPW Sbjct: 510 LFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETGHPW 569 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615 ITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH + Sbjct: 570 ITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADGAKV 629 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D KL TI+TA+R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ L+ L IPY Sbjct: 630 IDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRIPYG 689 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S +AVE AD SME + + A AS ELA+ERG YSS+ GSLWDQGV P+DS+ LLAE R Sbjct: 690 SQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGVLPMDSLKLLAEQRGG 749 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + + +S L W+ L+ ++ GMRNSNC+AIAPTATI+NI GV I+P++QNLYVKSN Sbjct: 750 YVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYVKSN 809 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV +LK R LWD M++DLKY DGS I+RIP DLK +++TAFE D Sbjct: 810 LSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYSTAFETDTQ 869 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W+IE+A+RRQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT EKS Sbjct: 870 WIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHAEKS 929 Query: 915 TLKGVDGKLNAVPVTDPN------SSTHSLGIPSSCTSDT-ECEVCQ 954 T+K G+LNAVP + + G C D ECE CQ Sbjct: 930 TVKA--GQLNAVPQSPSESASASAQAVVQSGDIRYCAIDNPECEACQ 974 >gi|296135013|ref|YP_003642255.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas intermedia K12] gi|295795135|gb|ADG29925.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas intermedia K12] Length = 978 Score = 1120 bits (2897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/951 (57%), Positives = 685/951 (72%), Gaps = 35/951 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V F+PSKI+ A+ KAF+AV+G + S +++ + LTE V LL+ S Sbjct: 37 KIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVRALLRSRPS 96 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE SLM++G H++TR YVLYRE R+ RA Q + AP L ++ Sbjct: 97 GGTFHIEDIQDQVELSLMRTGQHEVTRAYVLYRERRTQERAKQKAAAEQQESAPVLHVL- 155 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + L ++E AC L DV + +++ET +N+YDG+ ++ A I +SRT Sbjct: 156 DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYKASILASRT 215 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIE++P+Y+KVTAR LL +RRE L + +M Y EYF R I+EGV+ L Sbjct: 216 LIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCIKEGVELEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--------HINGSRIEMPQAF 320 L E + FDL L LK ERD F+YLGLQ LYDRYFL + +G RIE+PQAF Sbjct: 270 LDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELPQAF 329 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR QLSSC+LTTV DDL Sbjct: 330 FMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVADDL 389 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQ Sbjct: 390 DGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQ 449 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV + WT Sbjct: 450 GGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGGEWT 509 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP +V DLHD +GK+FE AY YE++A GEIK+F+ + AV LWRKML+MLFETGHPW Sbjct: 510 LFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETGHPW 569 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615 ITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH + Sbjct: 570 ITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADGAKV 629 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D KL TI+TA+R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ L+ L IPY Sbjct: 630 IDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRIPYG 689 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S +AVE AD SME + + A AS ELA+ERG YSS+ GSLWDQG+ P+DS+ LLAE R Sbjct: 690 SQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGILPMDSLKLLAEQRGG 749 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + + +S L W+ L+ ++ GMRNSNC+AIAPTATI+NI GV I+P++QNLYVKSN Sbjct: 750 YVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYVKSN 809 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV +LK R LWD M++DLKY DGS I+RIP DLK ++ATAFE D Sbjct: 810 LSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYATAFETDTQ 869 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W+IE+A+RRQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT EKS Sbjct: 870 WIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHAEKS 929 Query: 915 TLKGVDGKLNAVPVTDPNSS-----------THSLGIPSSCTSDTECEVCQ 954 T+K G+LNAVP + S S I + ECE CQ Sbjct: 930 TVKA--GQLNAVPQSPSESVSALASASAQAVVQSGDIRYCAIDNPECEACQ 978 >gi|307546479|ref|YP_003898958.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] gi|307218503|emb|CBV43773.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] Length = 968 Score = 1120 bits (2897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/913 (58%), Positives = 680/913 (74%), Gaps = 10/913 (1%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 PS++ P+ ++ VIKR G V FD KI+ A+ KAF+AVEG A+ S RV+D ++ Sbjct: 10 PSVSVTAPQTLR---VIKRTGDVVPFDSGKIAVALSKAFIAVEGDNAATSSRVRDFVQRA 66 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 +E L+ +HIEDIQDQVE +LM++G K+ R YVLYREE + RA +S + Sbjct: 67 SENIEQAFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARARA-ESGA 125 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 P P L + DG+ + R+E +V +AC L +V ++ ++ KN+YDG++ Sbjct: 126 DITKP-HPTLNVTAPDGSTRPLDLGRVETLVFDACENLANVEPGKIVEDSLKNLYDGVTV 184 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 + AL+ ++RTL+EK+PNY VTAR L + LRRE L+ + ++AT+ EM Y Sbjct: 185 DGVSQALMMTARTLVEKDPNYTYVTARLLQDNLRREALSFL-GIAEEATYQEMADYYKPA 243 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F YI +G++ L + +FDL L + L + RD F YLGLQ LYDRYF+H + R E Sbjct: 244 FQAYIAKGIEFEQLDPRLAEFDLERLGDALDHTRDAQFTYLGLQTLYDRYFIHRDEVRYE 303 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FMRVAMGLAL E ++E RA+EFY LLSSF +M STPTLFNSGT QLSSC+LTT Sbjct: 304 LPQVMFMRVAMGLALNEDDREARAIEFYELLSSFDYMASTPTLFNSGTVRSQLSSCYLTT 363 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPDDL I+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTA Sbjct: 364 VPDDLDNIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTA 423 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV Sbjct: 424 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFD 483 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + WTLFSP DLHDLYG FE Y+ YE G++K+F+++ A LWR+ML+MLFE Sbjct: 484 DGEWTLFSPATCPDLHDLYGAAFEKRYQEYEEMTRNGQLKLFKRVRAKDLWRRMLSMLFE 543 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL H + Q Sbjct: 544 TGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSINLAQHVTDGQ 603 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD DKL T++TAVR+LDNVIDIN + + +A++SN HR +GLG+MGFQ AL+ I YA Sbjct: 604 FDGDKLKKTVKTAVRMLDNVIDINYYAVPQAERSNFKHRPVGLGIMGFQDALYAQDIAYA 663 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EAV AD SME +S+HAI AS +LA ERG Y S++GSLW QG+ PIDSI L + R E Sbjct: 664 SDEAVAFADTSMELVSYHAIEASSDLAAERGHYESYEGSLWSQGILPIDSIEKLKQERGE 723 Query: 736 --LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++ ++ WD +++++ GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKS Sbjct: 724 KYIEVDTSTTQDWDRIREKIAVQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLFVKS 783 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 N+SG+FTVVN+++VN+LK+R LWDE MI+DLKY+DGS+ I+R+P+DLK +ATAFE +P Sbjct: 784 NLSGEFTVVNAYMVNDLKERGLWDEVMINDLKYYDGSVQAIDRVPEDLKAKYATAFETEP 843 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 WL+E+A+RRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ ATSVEK Sbjct: 844 KWLVEAAARRQKWIDQAQSLNLYIQGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEK 903 Query: 914 STLKGVDGKLNAV 926 ST+ G LNAV Sbjct: 904 STVD--RGNLNAV 914 >gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1306 Score = 1120 bits (2896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/899 (59%), Positives = 677/899 (75%), Gaps = 13/899 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+P+KI+ A+MKAF+AV G + S V++ + LT+Q + L++ Sbjct: 51 QIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRETVDGLTQQVIRALVRSRPG 110 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE LM+ GHH+I R YVLYRE R+ RA Q ++AP AP + ++ Sbjct: 111 GGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERAKQV--ATEAPAAPVIHVI- 167 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + + +L+ +E ACSGL DV + +L+ET +N+YDG+ ++ A I ++RT Sbjct: 168 DNGQRVPLDLAQLQFRIETACSGLGADVKAAPILAETMRNLYDGVPLDEVYKAAILAART 227 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR L + REVL + +MQ Y +YF +I+ G+ A L Sbjct: 228 LIEKDPDYTYATARLLFHTISREVLG------RDVAQADMQEAYADYFPGFIKRGIAAEL 281 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E + FDL L + LK RD F+YLGLQ LYDRYFLH +RIE+PQAFFMRVAMGL Sbjct: 282 LDEKLQQFDLKRLGSALKAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGL 341 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ Sbjct: 342 SLNEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 401 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 402 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 461 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP V Sbjct: 462 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVP 521 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL+G EFE AY YE +A RGEIK R + A LWRKMLTMLFETGHPWITFKD CN Sbjct: 522 DLHDLFGAEFEKAYVAYEEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACN 581 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NLL H + D++KL TI TA Sbjct: 582 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTA 641 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + ++KA+ SN HR +GLGLM FQ +L+ L IPYAS AVE AD+SME Sbjct: 642 MRMLDNVIDINYYAVKKARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSME 701 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 IS++A AS +LA+ERG Y S+KGSLWD+GV P D++ +LA R + ++R+S L W+ Sbjct: 702 AISYYAYWASTDLARERGKYHSYKGSLWDKGVLPPDTLDMLANARGGYVEVDRSSTLDWN 761 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ ++ GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+SG+FTV+NS+LV Sbjct: 762 ALRNKIAADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLV 821 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K+++ATAFE++ WL+E+A+RRQKWI Sbjct: 822 RDLKRLGLWDDVMVMDLKHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWI 881 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 DQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ SAT EKST+ G+LNAV Sbjct: 882 DQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMSATHAEKSTVTA--GRLNAV 938 >gi|319791702|ref|YP_004153342.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax paradoxus EPS] gi|315594165|gb|ADU35231.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax paradoxus EPS] Length = 971 Score = 1119 bits (2894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/908 (58%), Positives = 687/908 (75%), Gaps = 13/908 (1%) Query: 21 PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80 P + + Q+I+RNG V F+P+KI+ A+MKAF+AV G + S V++ + LT+ + Sbjct: 29 PTGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQGAASASVRETVDVLTQGVI 88 Query: 81 TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140 +++ HIED+QDQVE LM+ GHH+I R YVLYRE R+ R+ Q + +AP Sbjct: 89 RAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERSKQV--EQEAP 146 Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLE 199 P L ++ D+G ++ + +L+ ++E AC L D +++ +++ET +N+YDG+ ++ Sbjct: 147 ATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPIVAETMRNLYDGVPLDEVY 205 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 A I ++RTLIEK+P+Y TAR LL + +E++ +AT Y +YF ++ Sbjct: 206 KASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPVDRATA------YADYFPQF 259 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 I++GV+ LL E ++ +DL L LK ERD F+YLGLQ LYDRYFLH+ +RIE+PQA Sbjct: 260 IKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTLYDRYFLHVRKTRIELPQA 319 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+GT QLSSC+LTTVPDD Sbjct: 320 FFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVPDD 379 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVN Sbjct: 380 LDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVN 439 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + W Sbjct: 440 QGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTW 499 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLFSP V DLHDL+G +FE AY YE +A RGEIK R I A LWRKMLTMLFETGHP Sbjct: 500 TLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQASDLWRKMLTMLFETGHP 559 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 WITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NLL H + + D + Sbjct: 560 WITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGKVDQE 619 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL TI TA+R+LDNVIDIN + ++KA+ SN HR +GLGLMGFQ AL+ L IPYAS EA Sbjct: 620 KLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLMGFQDALYELRIPYASQEA 679 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738 V+ ADESME I +HA AS ELA+ERG YSS+KGSLWD+G+ PID++ LL + R + + Sbjct: 680 VQFADESMEAICYHAYWASTELAKERGKYSSYKGSLWDKGILPIDTLDLLEQARGGYVEV 739 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +R++ L WD L+ ++K GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+SG+ Sbjct: 740 DRSATLDWDALRAKIKADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGE 799 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P D+K ++ATAFE++ WL+E Sbjct: 800 FTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVETTWLVE 859 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR++SAT EKST++ Sbjct: 860 AASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHAEKSTVQS 919 Query: 919 VDGKLNAV 926 G+LNAV Sbjct: 920 --GRLNAV 925 >gi|291615086|ref|YP_003525243.1| ribonucleoside-diphosphate reductase, subunit alpha [Sideroxydans lithotrophicus ES-1] gi|291585198|gb|ADE12856.1| ribonucleoside-diphosphate reductase, alpha subunit [Sideroxydans lithotrophicus ES-1] Length = 946 Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/937 (58%), Positives = 687/937 (73%), Gaps = 24/937 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V SF+PSKIS A+ KAF+AV G + S RV+++++ LT V+ L++ Sbjct: 22 KVIRRNGSVVSFEPSKISIAVTKAFIAVNGGQGAASARVRELVEQLTANVVSALIRRQPH 81 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 +HIEDIQDQVE SLM+SG H + R YVLYRE+R+ R S K + AP L I Sbjct: 82 GGTLHIEDIQDQVELSLMRSGEHDVARSYVLYREQRTRER---SKGKKEIDAAPALNIKD 138 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D T + +L ++ AC GL V + +L T K++YDG++ ++ I S+RT Sbjct: 139 GDVTR-PLDVVQLSAQIQSACVGLGGAVDADKILKLTLKDLYDGVAVEEVRKCAILSART 197 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIE++P Y+ VTAR LL + E+L + + +M Y EYF ++I+ G++A L Sbjct: 198 LIEQDPAYSFVTARLLLNNICCEILGG------QVSQADMAERYAEYFPKFIKRGIEAEL 251 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+E + FDL LA L RD F YLGLQ LYDRYFLH++G RIE+PQAFFMRVAMGL Sbjct: 252 LNEELGHFDLDRLAGALDSSRDLQFNYLGLQTLYDRYFLHVDGQRIELPQAFFMRVAMGL 311 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E +E+RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ Sbjct: 312 SLNEINREERAIEFYRLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 371 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 372 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 431 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV + WTLFSP Sbjct: 432 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFSPSTCP 491 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G EFE AY YE + GE+K+F+K+ A +LWRKMLTMLFETGHPWITFKDPCN Sbjct: 492 DLHDKFGAEFEKAYTAYEAKVASGELKLFKKVPAQSLWRKMLTMLFETGHPWITFKDPCN 551 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLA 622 IRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL AH Q D+DKL Sbjct: 552 IRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLAAHLFPKGHAKAGQIDHDKLK 611 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ TA+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LH L IPY+S A+E Sbjct: 612 RTVSTAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHDLRIPYSSDAAIEF 671 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD SME + ++A AS +LA ERG Y+S++GSLWD+G+ P DS+ LL E R + ++ + Sbjct: 672 ADRSMEAVCYYAYWASTDLAAERGRYASYRGSLWDKGILPQDSLNLLLEQRGGYVEVDMS 731 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S L WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQN++VKSN+SG+FTV Sbjct: 732 SNLDWDALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIEPTYQNIFVKSNLSGEFTV 791 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +N LVN+LK LWDE MI+DLKY DGS+ I+RIP +L++++ATAFE++P WLIE+AS Sbjct: 792 INDHLVNDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRELYATAFEVEPKWLIEAAS 851 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SG+KLD Y+ AWL GLKTTYYLR+ ATS EKST + G Sbjct: 852 RRQKWIDQAQSLNIYMSGVSGRKLDETYKLAWLRGLKTTYYLRALGATSAEKSTSRA--G 909 Query: 922 KLNAVPV---TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 LNAV S++ + C+ D ECE CQ Sbjct: 910 SLNAVSSGGGAGEMSASPVVEEAKFCSIDNPECEACQ 946 >gi|160872690|ref|ZP_02062822.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Rickettsiella grylli] gi|159121489|gb|EDP46827.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Rickettsiella grylli] Length = 946 Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/929 (58%), Positives = 685/929 (73%), Gaps = 22/929 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKRNG + +DPSKI AI KAF+AVEG A+ S R+ + + LT+Q T L Q + Sbjct: 37 LQVIKRNGKLVDYDPSKIRVAITKAFLAVEGGQAALSTRIHERVSQLTQQITTILQQRHP 96 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKI 147 + IE IQDQVE +LM+ H++ R YVLYREER +RA + HS+ +L+I Sbjct: 97 QGGTLSIETIQDQVELALMRVEAHQVARAYVLYREERRKMRAETKPHSEI------QLQI 150 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + DG+ + +L +++ E C+ L+DV + +L ET +N+YDG+ +D++ ALI S+R Sbjct: 151 TLTDGSQRPLDLIQLSLLITETCNDLKDVKHERILQETLRNLYDGMPAADIDKALIISAR 210 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 +L+E +P Y TARFLL L E L + + P H +Y YF YI+ G++ Sbjct: 211 SLVEHDPQYTYATARFLLRTLYAEALHFL-ELPLHT--HRHSGIYSHYFQHYIKRGIQLE 267 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + FDL L+ L ERD F YLGLQ LYDRYFLH + R E+PQAFFMRVAMG Sbjct: 268 LLDPQLHTFDLEQLSQALLPERDQQFTYLGLQTLYDRYFLHADHIRFELPQAFFMRVAMG 327 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA E+ K RA+EFY+LLSSF +M STPTLFNSGT PQLSSCFLTTV DDL I+ A+ Sbjct: 328 LAQHESNKNDRAIEFYHLLSSFDYMASTPTLFNSGTLRPQLSSCFLTTVTDDLDHIYSAI 387 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NA+L+K++GGLGNDWTPVR +GA I GTNGKS GV+PFL VAN +AVAVNQGGKRKGA Sbjct: 388 KDNALLSKFAGGLGNDWTPVRAMGARIKGTNGKSLGVVPFLNVANASAVAVNQGGKRKGA 447 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR+ + WTLFSPDE Sbjct: 448 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFSPDET 507 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD +G FE Y+ YE +A RGEIK F+ I A LWRKML++LFETGHPWITFKDPC Sbjct: 508 PDLHDAFGSAFEEKYQAYEAKALRGEIKNFKTIPAATLWRKMLSLLFETGHPWITFKDPC 567 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIR 626 N+RSPQQHVG +HSSNLCTEITLN+S +E AVCNLGSINL H + + + KL TIR Sbjct: 568 NLRSPQQHVGTIHSSNLCTEITLNTSIDEIAVCNLGSINLPQHLTESGEIEKTKLRQTIR 627 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN +T+ +A++SN HR IGLGLMGFQ AL+ L +PYAS A+ AD++ Sbjct: 628 TAIRMLDNVIDINYYTVPQARRSNLKHRPIGLGLMGFQDALYQLRLPYASDAAITFADQT 687 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745 ME IS++AI AS +LA ERGAY SF GSLW QGV P+DSI L + R E L +RT+RL Sbjct: 688 MELISYYAIEASSDLAHERGAYESFPGSLWSQGVLPLDSIARLQKARGEFLDQDRTARLD 747 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+K+V GMR+SNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSNMSG+FT++N + Sbjct: 748 WDTLRKKVMH-GMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFTMINPY 806 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L+N+LK LWD M++DLKY+DGS+ IERIPD LK+++ATAFEI WL+E+ SRRQK Sbjct: 807 LINDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAGSRRQK 866 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQ+QSLNLY+ SGKKLD +Y+Q WL GLKT+YYLR+ AT EK+TL LN+ Sbjct: 867 WIDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTSYYLRTMGATHTEKATL--AKSHLNS 924 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + +++ P+ D +CE CQ Sbjct: 925 VHM-------NTVATPACSIVDPDCESCQ 946 >gi|332286775|ref|YP_004418686.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas sp. T7-7] gi|330430728|gb|AEC22062.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas sp. T7-7] Length = 973 Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/906 (59%), Positives = 683/906 (75%), Gaps = 21/906 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +I+RNG V F+P KI+ A+ KAF+AV G + S RV+++++ LT Q V L+++ S Sbjct: 35 HIIRRNGVVVGFEPGKIAIAMTKAFLAVNGGQGAASARVRELVETLTAQVVNALVRNRPS 94 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148 HIE+IQDQVE +LM+SG H + R YVLYRE+RS RA + AP A I+ Sbjct: 95 GGTFHIEEIQDQVELTLMRSGEHDVARAYVLYREKRSQERA----QSTPAPAATDQTIIH 150 Query: 149 -MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 D+G + RL + EA L ++ ++ +L ET KN+YDG+ ++ + I S+ Sbjct: 151 VTDNGVQCPLDLARLRATITEAGLNLPHNIDAEAILKETVKNIYDGIPVDEVFKSAILSA 210 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 R ++E +P+Y++VTAR LL +R+EVL ++ + +M Y EYF ++++ G++ Sbjct: 211 RAMVENDPSYSQVTARLLLHTIRKEVLG------EEVSQSDMATRYAEYFPQFLKAGIEG 264 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL E + FDL LA LK ERD F YLGLQ LYDRYFLH+ G RIE+PQ FFMRVAM Sbjct: 265 GLLDEKLAQFDLPKLAAALKAERDLQFNYLGLQTLYDRYFLHLRGRRIELPQVFFMRVAM 324 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E +E+RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ A Sbjct: 325 GLALNEINREERAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLAGIYDA 384 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 ++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 385 IKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 444 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N WTLFSP + Sbjct: 445 AVCAYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSD 504 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHD YGK+FE AY YE + RGE+ +F+K+ A LWRKML+MLFETGHPWITFKDP Sbjct: 505 APDLHDKYGKDFEEAYLGYEDKVARGELPLFKKVPANMLWRKMLSMLFETGHPWITFKDP 564 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQF--DYDKL 621 CNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL AH AN Q+ D++KL Sbjct: 565 CNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLAAHLKQDANGQYVLDHEKL 624 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 TI A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LH++ +P+AS +AVE Sbjct: 625 ERTIGIAMRMLDNVIDINYYAVPKARNSNVRHRPVGMGVMGFQDCLHMMRVPFASDDAVE 684 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740 +D SME ++A AS +LA ERG Y+SFKGSLWD+G+ P D++ LL E R + ++ Sbjct: 685 FSDRSMEAACYYAYWASSKLAAERGHYASFKGSLWDRGILPQDTLALLREERGGYVEVDD 744 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +S L WD L+ +K GMRNSNC+AIAPTATI+NI GVS I+P+Y+NLYVKSN+SG+FT Sbjct: 745 SSTLDWDSLRAHIKQHGMRNSNCVAIAPTATISNIIGVSPCIEPNYRNLYVKSNLSGEFT 804 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +LV +LK+R LWDE M+SDLKY DGS+ I+RIP DL+K++ATAFE+DP W++E A Sbjct: 805 VVNDYLVRDLKERKLWDEVMVSDLKYFDGSLARIDRIPADLRKLYATAFEVDPTWVVECA 864 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 +RR KWIDQAQSLN+++ SGKKLD IY+ AW+ GLKTTYYLRS AT+ EKST +G Sbjct: 865 ARRSKWIDQAQSLNIFMAGVSGKKLDDIYKLAWVRGLKTTYYLRSIGATNAEKSTGRG-- 922 Query: 921 GKLNAV 926 G+LNAV Sbjct: 923 GELNAV 928 >gi|114332418|ref|YP_748640.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas eutropha C91] gi|114309432|gb|ABI60675.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas eutropha C91] Length = 957 Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/932 (58%), Positives = 690/932 (74%), Gaps = 17/932 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG V +F+P KIS A+ KAF+AV G ++ S +++I+ LT + V L + Sbjct: 36 KVIRRNGAVVAFEPGKISIAMTKAFIAVRGGQSAASSSMREIVAQLTGEVVHALTRRRPG 95 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIEDIQDQVE +LM+SG H + R YVLYREER+ RA Q + A L I+ Sbjct: 96 GGTFHIEDIQDQVELALMRSGDHDVARAYVLYREERARERARQQKEPPTSTQAAVLHIV- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 ++G I + RL +E AC L +V ++ +++ +++YDG+ ++ + I S+R Sbjct: 155 ENGQRIPLDPSRLTARIESACQHLGNVVNAGLIVKAMLRDLYDGVPAEEVRKSAILSARA 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEKEP Y+ VTAR LL+ +R EVL + +H MQ Y +YF +I +G++A L Sbjct: 215 LIEKEPAYSFVTARLLLDNIRHEVLG------EDVSHEAMQSRYADYFPGFIRQGMEAGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E + FDL L+ L +RD F YLGLQ LYDRYFLHI+ RIE+PQAFFMRVAMGL Sbjct: 269 LDERLGQFDLARLSETLIADRDLQFGYLGLQTLYDRYFLHISERRIELPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY+LLS+F FM STPTLFNSGTR QLSSC+L+TVPD L GI+ A++ Sbjct: 329 ALNEIDREARAIEFYHLLSTFDFMSSTPTLFNSGTRRSQLSSCYLSTVPDSLDGIYEAIK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWTPVR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKR+ ++ WTLFSP + Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDLFMKRMLEDQEWTLFSPSDTP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLH+ YGK FE AY YE QA +G + + ++I A LWRKMLTMLFETGHPWITFKDPCN Sbjct: 509 DLHEKYGKAFEEAYIAYEEQATQGRLALHKRIPARQLWRKMLTMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 IRSPQ HVGVVHSSNLCTEITLN++ +E AVCNLGSINL AH + + D KL T+ TA Sbjct: 569 IRSPQNHVGVVHSSNLCTEITLNTNEKEIAVCNLGSINLPAHIVDGKLDLTKLKQTVATA 628 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ LH L I YAS EAVE AD SME Sbjct: 629 MRMLDNVIDINFYAVAKARNANLRHRPVGLGIMGFQDCLHKLGISYASREAVEFADSSME 688 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747 +++H AS ELA+ERG Y+++ GSLW++G+ P DS+ LL E R + ++ +S L W Sbjct: 689 AVAYHTYWASTELAEERGTYATYHGSLWERGILPQDSLALLQEERGGHVEVDTSSTLDWT 748 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L++R+K GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FTVVN LV Sbjct: 749 PLRERIKQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTVVNQSLV 808 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+LK++DLWDE MI+DLK++DG+ I+RIP++L+ ++ATAFEIDP WL+E+A+RRQKWI Sbjct: 809 NDLKKQDLWDEVMIADLKHYDGAASKIDRIPENLRALYATAFEIDPRWLVEAAARRQKWI 868 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLNLY+ SGKK+D +YR AWL GLKTTYYLR+ AT+ EKST+ G LNAVP Sbjct: 869 DQAQSLNLYMSGASGKKMDDLYRLAWLRGLKTTYYLRAMGATTAEKSTVH--TGTLNAVP 926 Query: 928 V-----TDPNSSTHSLGIPSSCTSDTECEVCQ 954 TD + HS D ECE CQ Sbjct: 927 AQQNGHTDSSGQIHS-ATKQCAIDDPECEACQ 957 >gi|241764093|ref|ZP_04762130.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax delafieldii 2AN] gi|241366557|gb|EER61045.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax delafieldii 2AN] Length = 975 Score = 1116 bits (2886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/919 (58%), Positives = 690/919 (75%), Gaps = 13/919 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++++ LT L++ Sbjct: 33 QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVREVVDTLTHNVTRALMRSRPG 92 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE LM+SGHH+I R YVLYRE R+ + H++ P AP+L ++ Sbjct: 93 GGTFHIEDVQDQVELGLMRSGHHEIARAYVLYRERRT--QERTRHNEEQLPQAPQLHVL- 149 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G + + RL+ ++E AC+GL DVS++ +++ET +N+YDG+ ++ A I ++RT Sbjct: 150 DGGERVVLDQGRLQSLIESACTGLGADVSAQPIVAETMRNLYDGVPMEEVYKASILAART 209 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR LL + REVL ++ +M Y +YF ++I++GV+ L Sbjct: 210 LIEKDPDYTYATARLLLHTIVREVLG------REVAPADMAQSYVDYFPQFIKKGVENDL 263 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E ++ +DL L LK ERD F+YLGLQ LYDRYFLH+ +RIE+PQAFFMRVAMGL Sbjct: 264 LDERLLQYDLQRLGAALKAERDLQFDYLGLQTLYDRYFLHVKKNRIELPQAFFMRVAMGL 323 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ Sbjct: 324 SLNEIDREARAIEFYEILSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 383 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 384 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 443 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP V Sbjct: 444 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVP 503 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL+G +FE AY YE +A RGEIK R + A LWRK+LTMLFETGHPWITFKD CN Sbjct: 504 DLHDLFGTDFEKAYVAYEEKAARGEIKPARTVQATDLWRKILTMLFETGHPWITFKDACN 563 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NLL H N Q D+DKL TI A Sbjct: 564 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKNGQIDHDKLKKTITVA 623 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + ++KA+ SN HR +GLG+M FQ +L+ L IPYAS EAVE AD+SME Sbjct: 624 MRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMAFQDSLYELRIPYASQEAVEFADQSME 683 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 I ++A AS ELA+ERG YSS+KGSLWD+G+ P+D++ +LA+ R + ++R++ L WD Sbjct: 684 AICYYAYWASTELARERGRYSSYKGSLWDRGILPLDTLDMLAQARGGYVEVDRSATLDWD 743 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+K++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N LV Sbjct: 744 ALRKKIAQDGMRNSNCVAIAPTATISNIIGVDASIEPSFGNLSVKSNLSGEFTVINGGLV 803 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK+ LWD+ MI DLK+ GS+ I+R+P D+K +++TAFE++P WL+E+ASRRQKWI Sbjct: 804 RDLKRLGLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVEPRWLVEAASRRQKWI 863 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT VE ST+ +LNAV Sbjct: 864 DQAQSLNIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQLNAVS 921 Query: 928 VTDPNSSTHSLGIPSSCTS 946 N +H+ S+ S Sbjct: 922 SGHDNGGSHASAAQSAPPS 940 >gi|72163400|ref|YP_291057.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] gi|71917132|gb|AAZ57034.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] Length = 821 Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/771 (67%), Positives = 629/771 (81%), Gaps = 2/771 (0%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219 +R+ +V EAC GL S++ V++E + Y G++ ++LE ALI ++RT +E +P+Y+ V Sbjct: 2 ERIRKVVAEACQGLPGASAETVIAEATRGFYPGITPAELELALIMAARTFVETDPDYSYV 61 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 +AR LL+KLRRE LT + P +ATH +M YPEY +I G++ L + DFDL Sbjct: 62 SARLLLDKLRREALTFLSGHPDEATHADMARRYPEYLRAFITRGIELEHLTPELADFDLD 121 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 L L+ ERD F YLGLQ LYDRYFLH G+R E+PQAF MRVAMG+AL E ++ RA Sbjct: 122 RLGAALRPERDLNFTYLGLQTLYDRYFLHHEGTRYELPQAFLMRVAMGVALHEDDRNARA 181 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 +EFY LLSSF FMCSTPTLFN+GTR PQLSSCFLTTV DDL IF A+ NA+L+KYSGG Sbjct: 182 IEFYELLSSFDFMCSTPTLFNAGTRRPQLSSCFLTTVGDDLAEIFRAISNNALLSKYSGG 241 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 LGNDWTPVRGLGAHI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHID+ Sbjct: 242 LGNDWTPVRGLGAHIKGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDI 301 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEFLDLRKNTGD+RRRTHDMNTANW+PDLF++RV +A WTLFSPDEV DLHD YG++F Sbjct: 302 EEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFSPDEVPDLHDRYGEDFA 361 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 AY YER ADRGEI+VFR++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVV Sbjct: 362 RAYVAYERAADRGEIRVFRRVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVV 421 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 HSSNLCTEITLN+S +E AVCNLGS+NL H + D ++L T+RTAVR+LDNVID+N Sbjct: 422 HSSNLCTEITLNTSLDEVAVCNLGSVNLANHVGPDGLDAERLRRTVRTAVRMLDNVIDVN 481 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +TI +A+++N HR IGLGLMG+Q AL L +P ASPEAVE ADESME +S++AI AS Sbjct: 482 LYTIPEAERANMRHRPIGLGLMGYQDALFTLRLPVASPEAVEFADESMELLSYYAIEASA 541 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDELKKRVKTIGM 758 +LA ERG+YSSF+GSLW +G+ PIDS+ LLAE R +L ++RT RL WD L+++V+T GM Sbjct: 542 DLAAERGSYSSFEGSLWSRGILPIDSLELLAEARRGDLDVDRTQRLDWDTLREKVRTTGM 601 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNSN MAIAPTATIANI GV+ SI+P Y+NLYVK+NMSGDFTVVN LV +LK+R LWDE Sbjct: 602 RNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSGDFTVVNPSLVRDLKERGLWDE 661 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 M++ LK HDGS+G I+R+P+DLK ++ATAFEIDP+WL+++ASRRQKWIDQAQSLNLY+ Sbjct: 662 EMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLVDAASRRQKWIDQAQSLNLYMA 721 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PV 928 EPSG+KLD +YR+AW GLKTTYYLRS+ AT VEKSTL+G DG+LNAV PV Sbjct: 722 EPSGRKLDELYRRAWRKGLKTTYYLRSQGATHVEKSTLRGTDGRLNAVTPV 772 >gi|33598410|ref|NP_886053.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella parapertussis 12822] gi|33603350|ref|NP_890910.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella bronchiseptica RB50] gi|33574539|emb|CAE39186.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella parapertussis] gi|33577474|emb|CAE34739.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella bronchiseptica RB50] Length = 975 Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/959 (56%), Positives = 695/959 (72%), Gaps = 53/959 (5%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT Q V+ L+++ + Sbjct: 35 IIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAG 94 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYRE-------------ERSDVRAAQSHSKS 137 HIED+QDQVE +LM+SG H + R YVLYRE E+S AAQ Sbjct: 95 GTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQE---- 150 Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSES 196 P L ++ D+G + L +E A GL Q ++ +L ET KN+YDG+ Sbjct: 151 -----PTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVD 204 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 ++ + I ++R L+EK+P Y++VTAR LL +R+EVL ++ + +M Y EYF Sbjct: 205 EVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQADMATRYAEYF 258 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 +I+ G++ LL + ++DL +A L RD F YLGLQ LYDRYFLH+ G+RIE+ Sbjct: 259 PAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIEL 318 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV Sbjct: 319 PQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTV 378 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAV Sbjct: 379 SDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAV 438 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N Sbjct: 439 AVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEN 498 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSP + DLHD YGK FE AY YE + GE+K+F+K+ AV+LWRKML+MLFET Sbjct: 499 GEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFET 558 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---AN 613 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL+AH AN Sbjct: 559 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSAN 618 Query: 614 N--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+DKL TI A+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ LH++ Sbjct: 619 GGYELDHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMR 678 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PYAS +A++ AD SME + +HA AS ELAQERG Y S++GSLW +G+ P D++ +L E Sbjct: 679 VPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLRE 738 Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++ +S L WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLY Sbjct: 739 ERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLY 798 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTVVN +LV +LK+ LWDE M++DLKY DGS+ I+R+P +L+K++ATAFE Sbjct: 799 VKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFE 858 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ ATS Sbjct: 859 VEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATS 918 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954 EKST +G G+LNAV D + + P + CT ECE CQ Sbjct: 919 AEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975 >gi|121608467|ref|YP_996274.1| ribonucleotide-diphosphate reductase subunit alpha [Verminephrobacter eiseniae EF01-2] gi|121553107|gb|ABM57256.1| ribonucleoside-diphosphate reductase, alpha subunit [Verminephrobacter eiseniae EF01-2] Length = 968 Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/920 (58%), Positives = 685/920 (74%), Gaps = 20/920 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR-LLQHNK 88 Q+++RNG V F P KI+ A+MKAF+AV G + S V++++ LT QTVTR L++ Sbjct: 34 QIMRRNGAVVPFQPQKIALAMMKAFLAVHGTQGAASASVREVVDGLT-QTVTRALMRSRP 92 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 HIED+QDQVE LM+ GHH+I R YVLYRE R+ R+ Q + P A L ++ Sbjct: 93 GGGTFHIEDVQDQVELGLMRGGHHEIARSYVLYRERRTQERSRQGSPQQ--PAAALLHVL 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D G ++ + RL+ ++E AC GL DV + +++ET +N+YDG+ ++ A I ++R Sbjct: 151 -DAGVRVALDPARLQALIESACVGLGPDVKADPIVAETMRNLYDGVPMDEVCKAAILAAR 209 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TLIEK+P+Y+ TAR LL + REVL + PQ +M Y +YF R+I++GV Sbjct: 210 TLIEKDPDYSYATARLLLHTIVREVLGS--DVPQA----QMALAYGDYFPRFIKKGVDNG 263 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL E ++ +DL L ++ ERD F+YLGLQ LYDRYFLH+ +RIE+PQ FFMRVAMG Sbjct: 264 LLDERLLQYDLQRLGAAIRAERDLKFDYLGLQTLYDRYFLHVRKTRIELPQVFFMRVAMG 323 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E E+E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ ++ Sbjct: 324 LALNEVEREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESI 383 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+L+K++GGLGNDWT VR LG++I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 384 KENALLSKFAGGLGNDWTRVRALGSYIAGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGA 443 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM RV + WTLFSP V Sbjct: 444 VCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMHRVMEKGHWTLFSPSSV 503 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLH+L+G +FE AY YE QA RG I R + A LWRKMLTMLFETGHPWITFKD C Sbjct: 504 PDLHELFGADFEKAYVAYEEQAARGAIGPARTVQATDLWRKMLTMLFETGHPWITFKDAC 563 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NLL H + Q D+DKL TI Sbjct: 564 NLRSPQQHAGVVHSSNLCTEITLNTSDSETAVCNLGSVNLLQHLKDGQIDHDKLRQTITV 623 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN + + KA+ SN HR +GLG+M FQ L+ L IPYAS AVE AD+SM Sbjct: 624 AMRMLDNVIDINYYAVRKARDSNLRHRPVGLGVMAFQDCLYELRIPYASQAAVEFADQSM 683 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPW 746 E I ++A AS ELA+ERG Y S++GSLW++G P+D++ LLA+ R D L ++R+SRL W Sbjct: 684 EAICYYAYWASTELAKERGKYLSYEGSLWERGQLPLDTLDLLAQARGDYLQVDRSSRLDW 743 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L++++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N+ L Sbjct: 744 DALRQKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINAGL 803 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK+ LWDE MI DLK+ GS+ I+R+P D+K +++TAFE+DP WL+E+ASRRQKW Sbjct: 804 VRDLKRLGLWDEVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVDPQWLVEAASRRQKW 863 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLN+Y+ SG+KLD Y+ AW+ GLKTTYYLR++SAT VE ST+ G+LNAV Sbjct: 864 IDQAQSLNIYMAGASGRKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TGQLNAV 921 Query: 927 PVTDPNSSTHSLGIPSSCTS 946 +S H ++ TS Sbjct: 922 -----SSGPHGDAFGAAATS 936 >gi|222112112|ref|YP_002554376.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax ebreus TPSY] gi|221731556|gb|ACM34376.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax ebreus TPSY] Length = 974 Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/933 (57%), Positives = 687/933 (73%), Gaps = 18/933 (1%) Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 A P+ A+P + Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++++ Sbjct: 22 ATPTGAHP----LMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT+ V L++ + HIED+QDQVE LM+ HH++ R YVLYRE R+ RA + Sbjct: 78 QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192 P P L + D G + + RL+ +VE AC+GL DV + +++ET +N+YDG Sbjct: 138 EQL--LPQMPALYVQ-DQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + ++ A I ++RTLIEK+P Y TAR LL + REVL + M Y Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPANMALAY 248 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E F ++I +GV LL +M+FDL L + LK ERD F+YLGLQ LYDRYFLH+ + Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQ+FFMRVAMGLAL+E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+ Sbjct: 309 RIELPQSFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHDLYG+ FE AY YE +A+ GE+ +F+++ AV LWRKML+M Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL H Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+DKL T+ TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ AL+ L I Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS AVE AD SME + ++A AS +LAQERG YSS++GSLW QG+ P+DS+ LL + Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728 Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R + ++RT+RL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL V Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+SG+FTV+N +LV +LKQ LWD+ M+ DLK+ GS+ I+R+P +K ++ATAFE+ Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT V Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 E ST+ +LNAV ++ ++ PSS Sbjct: 909 EMSTVN--TRQLNAVASGASDTGEGTMA-PSSA 938 >gi|33593915|ref|NP_881559.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella pertussis Tohama I] gi|33563989|emb|CAE43254.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella pertussis Tohama I] gi|332383334|gb|AEE68181.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella pertussis CS] Length = 975 Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/959 (56%), Positives = 693/959 (72%), Gaps = 53/959 (5%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT Q V+ L+++ + Sbjct: 35 IIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAG 94 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYRE-------------ERSDVRAAQSHSKS 137 HIED+QDQVE +LM+SG H + R YVLYRE E+S AAQ Sbjct: 95 GTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQE---- 150 Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSES 196 P L ++ D+G + L +E A GL Q ++ +L ET KN+YDG+ Sbjct: 151 -----PTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVD 204 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 ++ + I ++R L+EK+P Y++VTAR LL +R+EVL ++ + +M Y EYF Sbjct: 205 EVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQADMATRYAEYF 258 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 +I+ G++ LL + ++DL +A L RD F YLGLQ LYDRYFLH+ G+RIE+ Sbjct: 259 PAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIEL 318 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV Sbjct: 319 PQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTV 378 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAV Sbjct: 379 SDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAV 438 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N Sbjct: 439 AVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEN 498 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSP + DLHD YGK FE AY YE + GE+K+F+K+ AV+LWRKML+MLFET Sbjct: 499 GEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFET 558 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-- 614 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL+AH N Sbjct: 559 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNAN 618 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + ++DKL TI A+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ LH++ Sbjct: 619 GGYELNHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMR 678 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PYAS +A++ AD SME + +HA AS ELAQERG Y S++GSLW +G+ P D++ +L E Sbjct: 679 VPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLRE 738 Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++ +S L WD L+ R+K GMRNSNC+AIAPTATI+NI G S I+P++QNLY Sbjct: 739 ERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLY 798 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTVVN +LV +LK+ LWDE M++DLKY DGS+ I+R+P +L+K++ATAFE Sbjct: 799 VKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFE 858 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ ATS Sbjct: 859 VEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATS 918 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954 EKST +G G+LNAV D + + P + CT ECE CQ Sbjct: 919 AEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975 >gi|121595924|ref|YP_987820.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp. JS42] gi|120608004|gb|ABM43744.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp. JS42] Length = 972 Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/915 (58%), Positives = 680/915 (74%), Gaps = 17/915 (1%) Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 A P+ A+P + Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++++ Sbjct: 22 ATPTGAHP----LMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT+ V L++ + HIED+QDQVE LM+ HH++ R YVLYRE R+ RA + Sbjct: 78 QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192 P P L + D G + + RL+ +VE AC+GL DV + +++ET +N+YDG Sbjct: 138 EQL--LPQMPALYVQ-DQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + ++ A I ++RTLIEK+P Y TAR LL + REVL + +M Y Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPADMALAY 248 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E F ++I +GV LL +M+FDL L + LK ERD F+YLGLQ LYDRYFLH+ + Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQ FFMRVAMGLAL+E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+ Sbjct: 309 RIELPQTFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHDLYG+ FE AY YE +A+ GE+ +F+++ AV LWRKML+M Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL H Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+DKL T+ TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ AL+ L I Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS AVE AD SME + ++A AS +LAQERG YSS++GSLW QG+ P+DS+ LL + Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728 Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R + ++RT+RL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL V Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+SG+FTV+N +LV +LKQ LWD+ M+ DLK+ GS+ I+R+P +K ++ATAFE+ Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT V Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908 Query: 912 EKSTLKGVDGKLNAV 926 E ST+ +LNAV Sbjct: 909 EMSTVN--TRQLNAV 921 >gi|187479452|ref|YP_787477.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella avium 197N] gi|115424039|emb|CAJ50592.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella avium 197N] Length = 970 Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/944 (57%), Positives = 697/944 (73%), Gaps = 29/944 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+RNG V F+P KI+ A+ KAF+AV G + S RV++++ LTEQ V L+++ S Sbjct: 36 LIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGAASARVRELVGQLTEQVVNALVRNRPSG 95 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS--HSKSDAPIAPKLKIM 148 HIED+QDQVE SLM+SG H + R YVLYRE R+ RAA + K+ P P L + Sbjct: 96 GTFHIEDVQDQVELSLMRSGQHDVARAYVLYRERRAQERAAAAEVQDKAAVPAEPTLNVN 155 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 D+G + +L +E A GL + + ++ +L ET KN+YDG+ ++ + I ++R Sbjct: 156 -DNGVRRPLDMAQLRATIEAAGVGLTEFIDTETILKETVKNLYDGVPVDEVFKSAILAAR 214 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+EK+P Y++VTAR LL +R+EVL ++ + M Y YF +I+ G++A Sbjct: 215 ALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQASMAERYATYFPTFIQRGIEAG 268 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL + +FDL +A L RD F YLGLQ LYDRYFLH+ G+RIE+PQ FFMRVAMG Sbjct: 269 LLDAKLAEFDLERIARALNANRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMG 328 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL+E+++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ A+ Sbjct: 329 LALRESDREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAI 388 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 389 KENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGA 448 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N WTLFSP + Sbjct: 449 VCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVVENGDWTLFSPSDC 508 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHD YG+ FE AY YE +A GE+K+F+K+ A++LWRKML+MLFETGHPWITFKDPC Sbjct: 509 PDLHDKYGRAFEQAYLGYEAKAASGELKLFKKMPAISLWRKMLSMLFETGHPWITFKDPC 568 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANN--QFDYDKLA 622 NIRSPQQH+GVVHSSNLCTEITLN++ E AVCNLGS+NL+AH AN + D+DK+ Sbjct: 569 NIRSPQQHIGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPSANGGYELDHDKIK 628 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ A+R+LDNVIDIN + +EKA+ SN HR +GLG+MGFQ LH++ +PYAS A+E Sbjct: 629 HTVGIAMRMLDNVIDINYYAVEKARNSNLRHRPVGLGIMGFQDCLHMMRVPYASQAAIEF 688 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRT 741 AD SME + + A AS LA+ERG Y S++GSLW +G+ P DSI +L + R + ++ + Sbjct: 689 ADRSMEAVCYQAYWASSTLAEERGRYPSYEGSLWSRGILPQDSIAMLRDERGGNVDVDES 748 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S L WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTV Sbjct: 749 SSLDWDTLRARIKAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 808 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN +LV +LK+ LWDE M++DLKY DGS+ I+R+P +L++++ATAFE++P WL+E A+ Sbjct: 809 VNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPTELRELYATAFEVEPSWLVECAA 868 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ ATS EKST +G G Sbjct: 869 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTMGATSAEKSTGRG--G 926 Query: 922 KLNAVPVTDPNSSTHSL-----GIPSSCTSDT------ECEVCQ 954 +LNAV + ++S + + ++CT ECE CQ Sbjct: 927 ELNAVSAGNHSASAAPVLPEPEVVGAACTMRPGDPGFEECEACQ 970 >gi|293603287|ref|ZP_06685716.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter piechaudii ATCC 43553] gi|292818322|gb|EFF77374.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter piechaudii ATCC 43553] Length = 976 Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/950 (56%), Positives = 687/950 (72%), Gaps = 34/950 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++NLT Q V L+++ + Sbjct: 35 IIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVENLTSQAVNALVRNRPNG 94 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA----QSHSKSDAPIAPKLK 146 HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAA + KS A A + Sbjct: 95 GTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRTQERAAAAAAEGQEKSAAAPAEHVL 154 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D G + L + A GL + + S+ +L ET KN+YDG+ ++ + I S Sbjct: 155 NVTDAGVRRPLDLAELRATIVAAGEGLAEFIDSEAILKETVKNLYDGIPVDEVFKSAILS 214 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +R L+EK+P Y++VTAR LL +R+EVL ++ + M Y EYF +I G++ Sbjct: 215 ARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQDGMVARYAEYFPTFIARGIE 268 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 LL + ++DL L L +RD F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVA Sbjct: 269 GGLLSPELANYDLTRLGKALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVA 328 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 MGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ Sbjct: 329 MGLALREADRETRAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYD 388 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRK Sbjct: 389 AIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRK 448 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 GAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPS 508 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 + DLHD YG+ FE AY YE++ GE+K+++K+ A+ LWRKML+MLFETGHPWITFKD Sbjct: 509 DCPDLHDKYGRAFEEAYIGYEKRVASGELKLYKKMPALTLWRKMLSMLFETGHPWITFKD 568 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDK 620 PCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH + D DK Sbjct: 569 PCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDLDK 628 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 + T+ A+R+LDNVIDIN + +EKA+ SN HR +G+G+MGFQ L ++ +PYAS AV Sbjct: 629 IKRTVSIAMRMLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAV 688 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739 E AD SME + +HA AS LA+ERG Y S++GSLW +G+ P D++ +L + R + ++ Sbjct: 689 EFADRSMEAVCYHAYFASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVD 748 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +S L WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+F Sbjct: 749 ESSTLDWDTLRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEF 808 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 TVVN +LV +LK+ LWDE M++DLKY DGS+ I+R+P +L++++ATAFE++P WL+E Sbjct: 809 TVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVEC 868 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ ATS EKST +G Sbjct: 869 ASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTYYLRTLGATSAEKSTGRG- 927 Query: 920 DGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954 G+LNAV +++ P + CT ECE CQ Sbjct: 928 -GELNAVTAGGQSTAAAVGAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976 >gi|311696540|gb|ADP99413.1| ribonucleotide-diphosphate reductase subunit alpha [marine bacterium HP15] Length = 921 Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/947 (57%), Positives = 695/947 (73%), Gaps = 39/947 (4%) Query: 17 SLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 +LA P P + +QVIKRNG + FDPSKIS A+ KAF+AVEG A+ S R+ D + Sbjct: 5 ALAEPRPTSHTDTESLQVIKRNGTLVGFDPSKISIAVTKAFLAVEGDTAAGSARINDAVH 64 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 +T+Q + + + K+ VHIEDIQDQVE +LM++ K+ R YVLYREE + RA Sbjct: 65 RVTDQVIQAIGRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERA--R 122 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193 H+ +A P L + G + + +++ VE+A +GL+ + ++ + N+YDG+ Sbjct: 123 HAPVEA--HPHLTVKKTSGEIAPLDLGLMKLQVEQAATGLEGIDGDSLVDDALTNLYDGI 180 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQC 250 +E D+ +ALI ++R+ IE+EP+Y+ VTAR LLE+LR E L P + Sbjct: 181 AEEDVLSALIMTARSRIEREPDYSAVTARLLLEQLRLENAAALGLPISLP-------LAE 233 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 +YP+ ++E G++ LL E++ FDL L L+ ERD F +LGLQ LYDRYFLH N Sbjct: 234 IYPQALSAFVEAGIRYELLDEALAAFDLERLGAALQPERDLQFGFLGLQTLYDRYFLHWN 293 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 +R+E+PQ FFMRVAMGLAL+E + RA+EFYNLLSSF +M STPTLFNSGTRH QLSS Sbjct: 294 KARLELPQVFFMRVAMGLALREDDPNARAIEFYNLLSSFDYMASTPTLFNSGTRHSQLSS 353 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C+LTTV DDL I+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV Sbjct: 354 CYLTTVGDDLEDIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKV 413 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL + Sbjct: 414 VNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLI 473 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +R+ ++ WTLFSP + DLHDLYG F YE+YE A++G+IK+F+KI A LWRKML Sbjct: 474 ERMREDRDWTLFSPSDAPDLHDLYGNAFRERYEHYEALAEQGKIKLFKKIPAKQLWRKML 533 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 T+LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH Sbjct: 534 TVLFETGHPWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSVNLTAH 593 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 AN + D +L T+ TAVR+LDNVIDIN + + +A+ SN HR +GLG+MGFQ AL+ L Sbjct: 594 IANGELDVQRLEQTVNTAVRMLDNVIDINYYAVPQARNSNLKHRPVGLGIMGFQDALYQL 653 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY+SPEAVE AD +ME +S+ AI AS LA ERGAY S++GSLW QG+ PIDSI LL Sbjct: 654 GLPYSSPEAVEFADVAMEQLSYFAIRASATLAGERGAYESYEGSLWQQGILPIDSINLLK 713 Query: 731 EVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 E R E L++N +RL W +++ + T GMRNSN MAIAPTATI+NI GVSQSI+P+YQN Sbjct: 714 ENRREGDLSVNTNARLDWSPVRELIATNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQN 773 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L+VKSN+SG+FTVVN LV +LK LWD M++DLKY DGS+ I+RIP++LK +ATA Sbjct: 774 LFVKSNLSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATA 833 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FEID WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW GLKTTYYLRS A Sbjct: 834 FEIDARWLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGA 893 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 T EK+ PV P P C+ D +CE CQ Sbjct: 894 TGAEKT-----------APVAAPQ--------PQVCSIDDPDCEACQ 921 >gi|262369329|ref|ZP_06062657.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter johnsonii SH046] gi|262315397|gb|EEY96436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter johnsonii SH046] Length = 943 Score = 1107 bits (2864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/951 (56%), Positives = 690/951 (72%), Gaps = 43/951 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V SFD KIS AI KAF+AVEG+ ++ S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVASFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFSRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR--AAQSHSKSDAPIAPKLK 146 S +HIE+IQDQVE +LM++G K+ R YV+YR++R+D R A ++H P L+ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYRDQRADARKQAGENHH-------PTLQ 123 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I +G L + ++LE V +A GL+ ++ + ++ ET KN+Y+G+ SD+ T ++ ++ Sbjct: 124 ITDANGQLQPLDMRKLEATVTKAAEGLEGINVQAIIDETIKNLYNGVKASDIATTMMMAT 183 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RT IE+EPNY VTAR L ++L LT + A ++ ++++G++ Sbjct: 184 RTRIEQEPNYTYVTARLLRDELVATGLTFLGLSEDTAEGDALET--------FLKKGIEL 235 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL +++FDL LA ++ ER F YLGLQ L+DRYF+H +G R E+PQ FFMRV+M Sbjct: 236 DLLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSM 295 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GL+L E +E+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA Sbjct: 296 GLSLNEANREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGA 355 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKG Sbjct: 356 MRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKG 415 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 416 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSE 475 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDL G EF Y +YE A + + +KI A LWRKML+MLFETGHPWITFKD Sbjct: 476 TPDLHDLMGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDV 534 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H D +KLA T++ Sbjct: 535 CNLRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLVQHVQGGVLDREKLARTVK 594 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S AV+ ADES Sbjct: 595 TAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMQLAYGSDAAVDFADES 654 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744 ME IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E ++RT RL Sbjct: 655 MEVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRL 714 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N Sbjct: 715 DWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINP 774 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV LK R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W++++ASRRQ Sbjct: 775 YLVRALKDRGLWDSVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVEPRWIVDAASRRQ 834 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LN Sbjct: 835 KWIDQAQSLNLYISGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALN 892 Query: 925 AVP--------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 AV V + + +P +C+ D +CE CQ Sbjct: 893 AVKPATVTAAPVAAVAQEVKPEVVAEDEGFGQAAPVPMACSIDNPDCEACQ 943 >gi|120556761|ref|YP_961112.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter aquaeolei VT8] gi|120326610|gb|ABM20925.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinobacter aquaeolei VT8] Length = 949 Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/933 (57%), Positives = 693/933 (74%), Gaps = 34/933 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + +QVIKRNG + SF+P+KIS A+ KAF+AVEG A+ S R+ D + +TEQ V + + Sbjct: 46 QSLQVIKRNGTLVSFNPAKISVAVTKAFLAVEGDQAAGSARINDAVHRVTEQVVQAISRR 105 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA--PK 144 K+ VHIEDIQDQVE +LM++ K+ R YVLYREE + RA D P+ P Sbjct: 106 LKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARQRAV------DEPVEAHPH 159 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG++ + ++ VE+A +GL ++ ++ + +N+YDG+ E+++ +ALI Sbjct: 160 LTVKKADGSIAPLDLGLMKQQVEQASTGLDGINGDSLVEDALRNLYDGIEETEVLSALIM 219 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++R IE+EP+Y+ VTAR LLE+LR E + P+ E +YP+ +I G+ Sbjct: 220 TARGRIEREPDYSAVTARLLLEQLRLETAEAL-DLPRSLPLAE---IYPQALSAFIHAGI 275 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + LL E++ FDL L N LK ERD F +LGLQ LYDRYFLH N +R+E+PQ FFMRV Sbjct: 276 RYELLDEALAAFDLERLGNALKPERDLQFGFLGLQTLYDRYFLHWNKARLELPQVFFMRV 335 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL+E + RA+EFY LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL GI+ Sbjct: 336 AMGLALREDDPNARAIEFYELLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVGDDLEGIY 395 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 GA+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKR Sbjct: 396 GAIRDNALLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKR 455 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ ++ WTLFSP Sbjct: 456 KGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDREWTLFSP 515 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +V DLHDLYG F Y++YE A++G+IK+F+KI A LWRKMLT+LFETGHPWITFK Sbjct: 516 SDVPDLHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGHPWITFK 575 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH + + D +L T Sbjct: 576 DPCNLRSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIKDGELDVTRLERT 635 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + TAVR+LDNVIDIN + + +A+ SN HR +GLGLMGFQ AL+ L +PY+SPEAVE AD Sbjct: 636 VNTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSSPEAVEFAD 695 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTS 742 +ME +S+ A+ AS LA ERGAY +++GSLW QG+ P+DS+GLL + R +L++N S Sbjct: 696 VAMEQLSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDGDLSLNTNS 755 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 RL W +++ + GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVV Sbjct: 756 RLDWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVV 815 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LV +LK LWD M++DLKY DGS+ I+RIP +LK +ATAFEIDP WL+E+A+R Sbjct: 816 NPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEAAAR 875 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW GLKTTYYLRS AT EK+ Sbjct: 876 RQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT-------- 927 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 PV+ P P C+ D +CE CQ Sbjct: 928 ---APVSAPQ--------PQVCSIDNPDCEACQ 949 >gi|94986919|ref|YP_594852.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia intracellularis PHE/MN1-00] gi|94731168|emb|CAJ54530.1| Ribonucleotide reductase large subunit [Lawsonia intracellularis PHE/MN1-00] Length = 916 Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/946 (58%), Positives = 694/946 (73%), Gaps = 40/946 (4%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 P +A+ + +QVI+RNG + SF KI+ A+ KAF+AV+G+ + S ++D++ +L Sbjct: 4 PEVAF----SLAAMQVIRRNGDIVSFKSEKIAAALTKAFIAVKGEQSPLSSSLRDVVTHL 59 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 TE ++ L +HIEDIQDQVE +LMQSG H + R YVLYRE+R+ +R + S Sbjct: 60 TETVISALTHRFPDGGSIHIEDIQDQVERALMQSGEHDVARAYVLYREKRAAMR---NTS 116 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + A + ++D G + L I AC L VSS + + T K++YDG+S Sbjct: 117 EKKAVLH-----LVDKGEKKVLDHTWLMNICHVACKNLTSVSSISIFNNTLKSLYDGMSL 171 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +D+ ++LI S+RT+IE EP Y KVTAR L L EVL + + H+++ Y Sbjct: 172 ADVYSSLILSARTMIEYEPEYNKVTARLLRLSLAYEVLD---QSTELMDLHQLKIATISY 228 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F ++IE G+ A LL + F+ YLA L ERD F Y+G+Q LYDRYFLHI RIE Sbjct: 229 FPKFIELGINAGLLDPRLSTFNYSYLAQALVPERDELFGYIGIQTLYDRYFLHIKKRRIE 288 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FFMRVAMGLAL E +KE +A+EFYNLLS+F FM STPTLFNSGT PQLSSCFLTT Sbjct: 289 LPQLFFMRVAMGLALNEKKKEDKAIEFYNLLSNFDFMSSTPTLFNSGTIRPQLSSCFLTT 348 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + DDL IF +++ENA+L KY+GG+GNDWTPVR LG+ I GTNG+SQGVIPF+KVANDTA Sbjct: 349 INDDLENIFQSIKENALLQKYAGGIGNDWTPVRALGSPIKGTNGQSQGVIPFMKVANDTA 408 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +AVNQGGKRKGAVCAYLETWH+D+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV + Sbjct: 409 LAVNQGGKRKGAVCAYLETWHLDIEDFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVLE 468 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N+ WTLFSP++V +LH+ +G EFE Y +YE + GEI +F+K+SAV LWRKMLTMLFE Sbjct: 469 NSDWTLFSPNDVPELHEKFGLEFEKFYTHYEAKTLTGEITLFKKVSAVQLWRKMLTMLFE 528 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPWITFKD CN+RSPQQH+GV+HSSNLCTEITLN+S EE AVCNLGSINL +H N + Sbjct: 529 TGHPWITFKDACNLRSPQQHIGVIHSSNLCTEITLNTSKEEIAVCNLGSINLSSHLINGE 588 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +KL+ TI TA+R+LDNVIDIN + KA +N HR IG+G+MGF L+ L IPYA Sbjct: 589 VDQNKLSQTIATALRMLDNVIDINYYNSPKASYANLQHRPIGIGIMGFADCLYKLGIPYA 648 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S +AVE AD SME + ++ AS ELA+ERGAYS+F GSLWD+ + P+DS+ LL + R Sbjct: 649 SHQAVEFADRSMEIVCYYTYWASTELAKERGAYSTFPGSLWDRKILPLDSLDLLLKERGG 708 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 L ++R+SRL WD LK R+ GMRNSNC+++APTATI+NI GVSQ I+P+YQNLYVKSN Sbjct: 709 FLEVDRSSRLDWDALKDRIAKYGMRNSNCVSLAPTATISNIIGVSQGIEPAYQNLYVKSN 768 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 MSG+FT+VN +LVN+LK+ +LWDEAM++DLKY DGS+ I+R+PD LKK++ATAFEIDP+ Sbjct: 769 MSGEFTIVNEYLVNDLKKLNLWDEAMVADLKYFDGSVAYIDRVPDSLKKLYATAFEIDPV 828 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK- 913 WLIE+ASRRQKWIDQAQSLNLYLD PSGKK+D IY+ AWL GLKTTYYLRS A+ VEK Sbjct: 829 WLIEAASRRQKWIDQAQSLNLYLDTPSGKKMDEIYKLAWLRGLKTTYYLRSLGASQVEKV 888 Query: 914 -----STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 S LK D L A + DP ECE CQ Sbjct: 889 GTNSQSVLKK-DTVLRACSIDDP-----------------ECEACQ 916 >gi|50083945|ref|YP_045455.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter sp. ADP1] gi|49529921|emb|CAG67633.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter sp. ADP1] Length = 941 Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/947 (57%), Positives = 691/947 (72%), Gaps = 37/947 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKRNG V +FD KIS AI KAF+AVEG+ ++ S R+ D I LTE + + Sbjct: 11 LQVIKRNGEVATFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFNRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G HKI R YV+YRE+RS+ R +S A P L+I Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEHKIARSYVIYREQRSNAR-----QQSGANHHPTLQIT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L + L+ VE+A GL+ + + ++ ET KN+Y+G+ SD+ T ++ ++RT Sbjct: 126 DAQGQLQPLDLDALKATVEKAAEGLEGIEIQAIVEETVKNLYNGVKVSDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE EPNY VTAR L +L + L + A + ++ ++++GV+ L Sbjct: 186 RIEHEPNYTYVTARLLRNELVAKGLEFLGLSEDTAENDALET--------FLKKGVELEL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++FDL LA ++ ER F YLGLQ LYDRYF+H +G R E+PQ FFMRV+MGL Sbjct: 238 LDPELLNFDLATLAAAIQPERSNQFTYLGLQTLYDRYFIHSDGVRYELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A+ E +E+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 AINEDNREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYNIYGAIR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P EV Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWLPDLFMQRVFEDGEWTLFTPSEVP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G+EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGEEFAQRYAYYESIAKEQNL-LHKKVRAQDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H D DKLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSINLVQHVQGGVLDRDKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ +++ Y S EAV ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNMAYGSDEAVNFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERG YS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIQTSSDLAIERGVYSTFKGSLWDQGILPIDSLDIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRNKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 P------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 VT + T + +P +C+ D +CE CQ Sbjct: 895 KPTTVAAPVAAVAQETKPEVTAEDGFTTAAPVPMACSIDNPDCEACQ 941 >gi|311103858|ref|YP_003976711.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter xylosoxidans A8] gi|310758547|gb|ADP13996.1| ribonucleoside-diphosphate reductase, alpha subunit [Achromobacter xylosoxidans A8] Length = 976 Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/951 (56%), Positives = 687/951 (72%), Gaps = 36/951 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+RNG V F+P+KI+ A+ KAF+AV G + S RV+++++NLT Q V L+++ + Sbjct: 35 IIRRNGSVVGFEPNKIAIAMTKAFLAVNGGQGAASARVRELVENLTGQAVNALVRNRPNG 94 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPKL 145 HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAA + K+ AP L Sbjct: 95 GTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRTQERAAAAAAADTQEKAAAPQEHVL 154 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204 + D G + L +E A GL + + ++ +L ET KN+YDG+ ++ + I Sbjct: 155 NVT-DAGVRRPLDLAELRATIEAAGEGLAEFIDTEAILKETVKNLYDGIPVDEVFKSAIL 213 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S+R L+EK+P Y++VTAR LL +R+EVL ++ + M Y EYF +I G+ Sbjct: 214 SARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQDGMAARYAEYFPTFIARGI 267 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + LL + +DL L + L +RD F YLGLQ LYDRYFLHI G+RIE+PQ FFMRV Sbjct: 268 EGGLLSPDLASYDLTKLGHALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRV 327 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ Sbjct: 328 AMGLALREADRETRAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIY 387 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKR Sbjct: 388 DAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKR 447 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 448 KGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSP 507 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + DLHD YG+ FE AY YE + GE+K+F+K+ A+ LWRKML+MLFETGHPWITFK Sbjct: 508 SDCPDLHDKYGRAFEEAYVGYEARVASGELKLFKKMPALNLWRKMLSMLFETGHPWITFK 567 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYD 619 DPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH + D+D Sbjct: 568 DPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHD 627 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 K+ T+ A+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ L ++ +PYAS A Sbjct: 628 KIKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQSA 687 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738 VE AD SME + +HA AS LA+ERG Y S++GSLW +G+ P D++ +L + R + + Sbjct: 688 VEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVEV 747 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + +S L WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+ Sbjct: 748 DESSTLDWDTLRARIKKHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGE 807 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FTVVN +LV +LK+ LWDE M++DLKY DGS+ I+R+P +L+ ++ATAFE++P WL+E Sbjct: 808 FTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRDLYATAFEVEPSWLVE 867 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ ATS EKST +G Sbjct: 868 CASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG 927 Query: 919 VDGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954 G+LNAV ++S P + CT ECE CQ Sbjct: 928 --GELNAVSAGGQSTSAAVAAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976 >gi|198284353|ref|YP_002220674.1| ribonucleoside-diphosphate reductase subunit alpha [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665782|ref|YP_002427015.1| ribonucleotide-diphosphate reductase, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248874|gb|ACH84467.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517995|gb|ACK78581.1| ribonucleotide-diphosphate reductase, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 948 Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/952 (57%), Positives = 696/952 (73%), Gaps = 40/952 (4%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 P + +VI+RN + +FD SKI A+ KAF+AVEG + S RV+D++ LTEQ + Sbjct: 17 PSEASHYKVIRRNNAMVNFDASKIHIAVTKAFLAVEGGSGAASARVRDLVSRLTEQVIEA 76 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 L + HIEDIQDQVE +LM++G H++ R YVLYREER+ R Q+ +++ A + Sbjct: 77 LKRRQPGGGTFHIEDIQDQVELALMRAGEHEVARAYVLYREERARERRQQAAAETPADV- 135 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETA 201 P +++ +G+ + + RL +++EACSGL VS +L T KN+YDG+SE +L A Sbjct: 136 PVIRVSYPNGSQRALDMVRLRAVIDEACSGLGTAVSIDAILGNTVKNLYDGISEDELFQA 195 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I +SR LIE++P YA +AR LL+++R EVL + AT EM YP+YF Y++ Sbjct: 196 PILASRVLIERDPAYAYASARLLLDRVRWEVLG------EAATQAEMTARYPQYFRDYLQ 249 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 G++ L+ + +DL + L+ ERD F+YLG+QILYDRYFLH+ RIE+PQAF+ Sbjct: 250 TGIQNELIDPRLGQYDLERITAALRPERDLDFQYLGMQILYDRYFLHVRERRIELPQAFW 309 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 MRVAMGLA+ E ++E A+ FY +LSSF F+ STPTLFN+GT PQLSSCFLTTV DDL Sbjct: 310 MRVAMGLAMNEVDRETHAIAFYEVLSSFDFVSSTPTLFNAGTLRPQLSSCFLTTVGDDLD 369 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ A++ENAML+K+SGGLGNDWTPVR LG+ I GTNGKSQGV+PFLKV NDTAVAVNQG Sbjct: 370 DIYEAIKENAMLSKFSGGLGNDWTPVRALGSFIKGTNGKSQGVVPFLKVVNDTAVAVNQG 429 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV NA WTL Sbjct: 430 GKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVENNAMWTL 489 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FSP+E DLHDL G F YE+YER AD G I++F++I A+ LWRKMLTMLFETGHPWI Sbjct: 490 FSPNETPDLHDLTGSAFRERYEHYERMADAGGIELFKRIPAIHLWRKMLTMLFETGHPWI 549 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------- 613 TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NL++H Sbjct: 550 TFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNAKEIAVCNLGSVNLVSHLRAVADAGALR 609 Query: 614 ---------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 D +KL TIR A+R+LDNVID+N + + KA+ SN HR +GLGLMGF Sbjct: 610 EDSTPEELLAMMDGEKLHHTIRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFS 669 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL + IPYAS A+ AD S E IS+HAI AS +LA+ERG+Y SF GSLW QG+ PID Sbjct: 670 DALLQMRIPYASAAALAFADISQEVISYHAIDASADLARERGSYQSFPGSLWSQGILPID 729 Query: 725 SIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 SI LLA R+ + ++R+ L W L+ +V+ GMRNSNC+AIAPTATI+NI GVSQ I+ Sbjct: 730 SIDLLAAGREHGVDVDRSQHLDWATLRSKVRG-GMRNSNCLAIAPTATISNIVGVSQGIE 788 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P YQNLYVKSN+SG+FTVVNS+LV++LK+ +LWDE M++DLKY DGS+ ++RIP +K Sbjct: 789 PIYQNLYVKSNLSGEFTVVNSYLVHDLKRLELWDEVMVNDLKYFDGSVMPVDRIPASIKP 848 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++A AFE DP WL+E+A+RRQKW+DQAQSLNLY +PSGKK+D IYR AW GLKTTYYL Sbjct: 849 LYANAFETDPEWLVEAAARRQKWLDQAQSLNLYFGQPSGKKIDEIYRLAWKRGLKTTYYL 908 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 RS AT+ EKST++ G LNAV G P +C D CE CQ Sbjct: 909 RSLGATAAEKSTVQ--TGTLNAV----------VSGQPKACAIDDPTCEACQ 948 >gi|163854888|ref|YP_001629186.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella petrii DSM 12804] gi|163258616|emb|CAP40915.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella petrii] Length = 974 Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/971 (55%), Positives = 698/971 (71%), Gaps = 39/971 (4%) Query: 14 AFPSLAYPFPEKIKGVQ-----VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68 A P P G Q VI+RNG V F+PSKI+ A+ KAF+AV G + S RV Sbjct: 13 AVPPSQTDVPADANGGQWASYNVIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARV 72 Query: 69 QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128 +++++ L Q V L+++ + HIEDIQDQVE +LM+SG H + R YVLYRE+R+ Sbjct: 73 RELVETLASQAVNALVRNRPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRAQE 132 Query: 129 RAAQSH--SKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 RAA + K+ +A + + ++D+G + L +E A GL + + ++ +L E Sbjct: 133 RAAAAEVLEKTAPAVAQESHLNVVDNGVRRPLDLAALRATIEAAGEGLSEFIDTEAILKE 192 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ ++ + I S+R L+EK+P Y++VTAR LL +R+EVL ++ + Sbjct: 193 TVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVS 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 M Y EYF +I+ G++ LL + ++DL + L RD F YLGLQ LYDR Sbjct: 247 QAGMATRYAEYFPTFIQRGIEGGLLDAKLAEYDLARVGAALDARRDLQFGYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLHI G+RIE+PQ FFMRVAMGLAL+E+++E RA+EFY +LSSF FM STPTLFNSGT Sbjct: 307 YFLHIRGTRIELPQVFFMRVAMGLALRESDREARAIEFYEILSSFDFMSSTPTLFNSGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV Sbjct: 367 HSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV +N WTLFSP + DLHD YGK FE AY YE + GE+K+F+K+ A++ Sbjct: 487 IPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYLGYEAKVASGELKLFKKMPAIS 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGS 606 Query: 605 INLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH + D+DKL T+ A+R+LDNVIDIN + ++KAK SN HR +G+G Sbjct: 607 VNLVAHMKPAAAGGFELDHDKLKRTVGIAMRMLDNVIDINYYAVKKAKDSNERHRPVGMG 666 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ L ++ +PYAS AVE AD SME + +HA AS ELAQERG Y S++GSLW +G Sbjct: 667 IMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSELAQERGRYPSYEGSLWSRG 726 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P D++ +L + R + ++ +S L W+ L+ R+K GMRNSNC+AIAPTATI+NI GV Sbjct: 727 ILPQDTLAMLRDERGGHVEVDESSTLDWNALRARIKEHGMRNSNCIAIAPTATISNIIGV 786 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLKY DGS+ I+R+P Sbjct: 787 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVP 846 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLK Sbjct: 847 SELRELYATAFEVEPRWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLK 906 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD---------PNSSTHSLGIPSSCTSDT- 948 TTYYLR+ ATS EKST +G G+LNAV PN + + + CT Sbjct: 907 TTYYLRTLGATSAEKSTGRG--GELNAVSAGQAATAVTAAAPNLPEPEV-LGAVCTMRPG 963 Query: 949 -----ECEVCQ 954 ECE CQ Sbjct: 964 DPGFEECEACQ 974 >gi|169634185|ref|YP_001707921.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii SDF] gi|169152977|emb|CAP02025.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter baumannii] Length = 943 Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/949 (56%), Positives = 689/949 (72%), Gaps = 39/949 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ ++ S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLTEMVLNTFTRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G HK+ R YV+YR++R+ R +++ P L++ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASAR-----KDTNSNHHPTLQVT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L ++L L + A ++ ++ ++++GV+ L Sbjct: 186 RIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA--------FLKKGVELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA T++TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S EAV+ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVKFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N L Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPCL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 --------PVTDP------------NSSTHSLGIPSSCTSDT-ECEVCQ 954 P P + T + +P +C+ D +CE CQ Sbjct: 895 KPATVEAAPAVAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943 >gi|221065169|ref|ZP_03541274.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas testosteroni KF-1] gi|220710192|gb|EED65560.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas testosteroni KF-1] Length = 969 Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/892 (58%), Positives = 674/892 (75%), Gaps = 10/892 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+R+G V +F P KI+ A+ KAF+AV G + S V+D + LT+ V L++ Sbjct: 27 QIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDTVNELTDGVVRALVRSRPD 86 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148 HIED+QDQVE LM++GH + R YVLYRE R+ RA Q A A ++ Sbjct: 87 GGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAEQKKVAEVAAAAATKPVLH 146 Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 D+G + N +RLE ++ +C L D+ S +++ET +N+YDG+ +++ A I ++ Sbjct: 147 VTDNGQRVPLNQERLEALIVASCGNLNADIQSAPIVAETLRNLYDGVPLAEVYKASILAA 206 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTLIEK+P+Y VTAR LL + REV+ + Q A EMQ Y +YF ++++GV Sbjct: 207 RTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---EMQAAYADYFPGFVQKGVDN 260 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL+ ++++DL LA LK ERD F+YLGLQ LYDRYFLH+ +RIE+PQ+FFMRVAM Sbjct: 261 ELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAM 320 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ + Sbjct: 321 GLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYES 380 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 ++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 381 IKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 440 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP + Sbjct: 441 AVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGQWTLFSPAD 500 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDLYG+ FE AY YE + D GE+K+F+++ AV LWRKML+MLFETGHPWITFKDP Sbjct: 501 APDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDP 560 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL+ H + + D+DKL T+ Sbjct: 561 CNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVN 620 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN + ++KAK SN HR +G+GLMGFQ AL+ + YAS AVE ADE+ Sbjct: 621 TAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEA 680 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745 ME I ++A AS EL++ERG YS+FKGSLWDQG+ P D++ LL + R + ++R+++L Sbjct: 681 MEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGGYVEVDRSAKLD 740 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N + Sbjct: 741 WDALRAKIAKDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQY 800 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K ++ATAFE+ P WL+E+ASRRQK Sbjct: 801 LVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQK 860 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 WIDQAQSLN+Y+ SGKKL Y AWL GLKTTYYLR+ SAT++EKST++ Sbjct: 861 WIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912 >gi|226940722|ref|YP_002795796.1| NrdA [Laribacter hongkongensis HLHK9] gi|226715649|gb|ACO74787.1| NrdA [Laribacter hongkongensis HLHK9] Length = 917 Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/926 (58%), Positives = 680/926 (73%), Gaps = 23/926 (2%) Query: 32 IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91 I+R G V F+ KI+ A+ KAF+AV+G+ A +S R++D + LT+ V L Sbjct: 12 IRRTGDVVPFNADKIALAMRKAFIAVQGESAGQSSRLRDEVARLTQDVVNALTGRRPEGS 71 Query: 92 IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151 + IEDIQDQVE +LM+SG H++ R YVLYRE R+ R A+ + + P L + D Sbjct: 72 AIAIEDIQDQVELALMRSGEHEVARAYVLYREARAAERRARHAALGIDQL-PALHVTRPD 130 Query: 152 GTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 G+ + +RL +E AC GL+ D +L++T KN+YDG++E+++E ALI S+R I Sbjct: 131 GSRAPLDIERLGRQLEAACHGLEADTRPAALLADTLKNLYDGVTEAEVERALILSARQWI 190 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 E++P Y KVTAR LL+ +RREV V Y E F + I+ G++A LL Sbjct: 191 ERDPAYDKVTARLLLDTIRREVAGGV------------AATYAEVFQQGIQRGMQADLLD 238 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 + DFDL LA L ERD F YLGLQ LYDRYFLH++G RIEMPQ FFMRVAMGLAL Sbjct: 239 PRLADFDLPRLAAALDGERDRQFGYLGLQTLYDRYFLHVDGRRIEMPQTFFMRVAMGLAL 298 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 E + +A+EFY+LLS F FM STPTLFN+GTRH QLSSC+LTT+ D L GIF A++EN Sbjct: 299 NEADPTTQAMEFYDLLSRFDFMSSTPTLFNAGTRHSQLSSCYLTTIADSLDGIFDAIKEN 358 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAVCA Sbjct: 359 AQLSKFAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 418 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +NA WTLFSP +V DL Sbjct: 419 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMQRVMENAEWTLFSPADVPDL 478 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 HDL G+ F Y YE A ++ + + AV LWRKMLTMLFETGHPW+T+KD CN+R Sbjct: 479 HDLTGRAFARRYAEYEAMARADTLRNAKTLRAVDLWRKMLTMLFETGHPWLTWKDACNLR 538 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 SPQQHVG VHSSNLCTEITLN+S +E AVCNLGS+NL H D +KLA T+R A+R Sbjct: 539 SPQQHVGRVHSSNLCTEITLNTSDDEIAVCNLGSVNLANHLKEGALDQEKLARTVRVAMR 598 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +EKA+ +N HR +GLG+MGFQ LHLL +PY S AV ADESME I Sbjct: 599 MLDNVIDLNFYPVEKARTANLRHRPVGLGVMGFQDCLHLLRLPYGSQAAVGFADESMELI 658 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDEL 749 ++HA AS ELA+ RG Y SF+GSLW QG+ P DS+ LL AE + L ++R+SRL W + Sbjct: 659 AYHAYLASTELAEMRGCYPSFEGSLWSQGILPQDSVELLAAERQGYLEVDRSSRLDWTPV 718 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++R+ GMRNSNC+AIAPTATIANI GVS SI+P+Y+NL+VKSN+SG+FTVVN FLV + Sbjct: 719 RERIARFGMRNSNCLAIAPTATIANIIGVSASIEPTYKNLFVKSNLSGEFTVVNEFLVQD 778 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 LK+ LWD M++DLKY DG + IERIP D+K ++ATAF++DP WL+E+ASRRQKWIDQ Sbjct: 779 LKRLGLWDAVMLADLKYFDGDLAPIERIPQDIKTLYATAFDVDPGWLVEAASRRQKWIDQ 838 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 AQSLNLY+ SGKKLD +Y+ AW+ GLKTTYYLR+ +ATS EKST +G G+LNAVP+ Sbjct: 839 AQSLNLYMAGASGKKLDTLYKLAWVRGLKTTYYLRTLAATSAEKSTGRG--GELNAVPI- 895 Query: 930 DPNSSTHSLGIPSSCTSDT-ECEVCQ 954 + P C+ D +CE CQ Sbjct: 896 ----EGGMVAEPKFCSIDNPDCEACQ 917 >gi|264680214|ref|YP_003280124.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni CNB-2] gi|262210730|gb|ACY34828.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni CNB-2] Length = 969 Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/892 (58%), Positives = 675/892 (75%), Gaps = 10/892 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+R+G V +F P KI+ A+ KAF+AV G + S V+D + LTE V L++ Sbjct: 27 QIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDTVNELTEGVVRALVRSRPD 86 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148 HIED+QDQVE LM++GH + R YVLYRE R+ RA Q + A A ++ Sbjct: 87 GGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAEQKKAAEVAAAAAAKPVLH 146 Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 D+G + + +RLE ++ +C L D+ S +++ET +N+YDG+ +++ A I ++ Sbjct: 147 VTDNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLRNLYDGVPLAEVYKASILAA 206 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTLIEK+P+Y VTAR LL + REV+ + Q A EMQ Y +YF ++++GV Sbjct: 207 RTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---EMQAAYADYFPGFVQKGVDN 260 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL+ ++++DL LA LK ERD F+YLGLQ LYDRYFLH+ +RIE+PQ+FFMRVAM Sbjct: 261 ELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAM 320 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ + Sbjct: 321 GLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYES 380 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 ++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 381 IKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 440 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP + Sbjct: 441 AVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGQWTLFSPAD 500 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDLYG+ FE AY YE + D GE+K+F+++ AV LWRKML+MLFETGHPWITFKDP Sbjct: 501 APDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDP 560 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL+ H + + D+DKL T+ Sbjct: 561 CNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVN 620 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN + ++KAK SN HR +G+GLMGFQ AL+ + YAS AVE ADE+ Sbjct: 621 TAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEA 680 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745 ME I ++A AS EL++ERG YS+FKGSLWDQG+ P D++ LL + R + ++R+++L Sbjct: 681 MEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGGYVEVDRSAKLD 740 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N + Sbjct: 741 WDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQY 800 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K ++ATAFE+ P WL+E+ASRRQK Sbjct: 801 LVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQK 860 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 WIDQAQSLN+Y+ SGKKL Y AWL GLKTTYYLR+ SAT++EKST++ Sbjct: 861 WIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912 >gi|299533978|ref|ZP_07047330.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas testosteroni S44] gi|298717887|gb|EFI58892.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas testosteroni S44] Length = 969 Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/892 (58%), Positives = 675/892 (75%), Gaps = 10/892 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+R+G V +F P KI+ A+ KAF+AV G + S V+D + LTE V L++ Sbjct: 27 QIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDTVNELTEGVVRALVRSRPD 86 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148 HIED+QDQVE LM++GH + R YVLYRE R+ RA Q + A A ++ Sbjct: 87 GGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAEQKKAAEVAAAAAAKPVLH 146 Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 D+G + + +RLE ++ +C L D+ S +++ET +N+YDG+ +++ A I ++ Sbjct: 147 VTDNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLRNLYDGVPLAEVYKASILAA 206 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTLIEK+P+Y VTAR LL + REV+ + Q A EMQ Y +YF ++++GV Sbjct: 207 RTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---EMQTAYADYFPGFVQKGVDN 260 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL+ ++++DL LA LK ERD F+YLGLQ LYDRYFLH+ +RIE+PQ+FFMRVAM Sbjct: 261 ELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAM 320 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ + Sbjct: 321 GLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYES 380 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 ++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 381 IKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 440 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP + Sbjct: 441 AVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGQWTLFSPAD 500 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDLYG+ FE AY YE + D GE+K+F+++ AV LWRKML+MLFETGHPWITFKDP Sbjct: 501 APDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDP 560 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL+ H + + D+DKL T+ Sbjct: 561 CNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVN 620 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN + ++KAK SN HR +G+GLMGFQ AL+ + YAS AVE ADE+ Sbjct: 621 TAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEA 680 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745 ME I ++A AS EL++ERG YS+FKGSLWDQG+ P D++ LL + R + ++R+++L Sbjct: 681 MEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGGYVEVDRSAKLD 740 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N + Sbjct: 741 WDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQY 800 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K ++ATAFE+ P WL+E+ASRRQK Sbjct: 801 LVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQK 860 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 WIDQAQSLN+Y+ SGKKL Y AWL GLKTTYYLR+ SAT++EKST++ Sbjct: 861 WIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912 >gi|169797063|ref|YP_001714856.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AYE] gi|184157024|ref|YP_001845363.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii ACICU] gi|213156531|ref|YP_002318192.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter baumannii AB0057] gi|215484524|ref|YP_002326759.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii AB307-0294] gi|239501300|ref|ZP_04660610.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB900] gi|260555645|ref|ZP_05827865.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|301345631|ref|ZP_07226372.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB056] gi|301512782|ref|ZP_07238019.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB058] gi|301596293|ref|ZP_07241301.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB059] gi|332852153|ref|ZP_08433980.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013150] gi|332867552|ref|ZP_08437705.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013113] gi|332872598|ref|ZP_08440566.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6014059] gi|169149990|emb|CAM87884.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter baumannii AYE] gi|183208618|gb|ACC56016.1| Ribonucleotide reductase, alpha subunit [Acinetobacter baumannii ACICU] gi|193076531|gb|ABO11187.2| ribonucleoside diphosphate reductase alpha subunit [Acinetobacter baumannii ATCC 17978] gi|213055691|gb|ACJ40593.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter baumannii AB0057] gi|213986949|gb|ACJ57248.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii AB307-0294] gi|260410556|gb|EEX03854.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|322506923|gb|ADX02377.1| nrdA [Acinetobacter baumannii 1656-2] gi|323516790|gb|ADX91171.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii TCDC-AB0715] gi|332729525|gb|EGJ60864.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013150] gi|332733969|gb|EGJ65114.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013113] gi|332739127|gb|EGJ69986.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6014059] Length = 944 Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/950 (56%), Positives = 688/950 (72%), Gaps = 40/950 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ ++ S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLTEMVLNTFTRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G HK+ R YV+YR++R+ R +++ P L++ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASAR-----KDTNSNHHPTLQVT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L ++L L + A ++ ++ ++++GV+ L Sbjct: 186 RIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA--------FLKKGVELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA T++TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S EAV ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 P---------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 + + T + +P +C+ D +CE CQ Sbjct: 895 KPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 944 >gi|120609558|ref|YP_969236.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax citrulli AAC00-1] gi|120588022|gb|ABM31462.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax citrulli AAC00-1] Length = 983 Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/903 (58%), Positives = 668/903 (73%), Gaps = 15/903 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++ + LT+ V L++ Sbjct: 36 QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVRETVDTLTQSVVRALMRSRPG 95 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QD VE SLM+ GHH++ R YVLYRE R+ RA Q H + P P L ++ Sbjct: 96 GGTFHIEDVQDNVELSLMRGGHHEVARAYVLYRERRTQERAHQQHDRQPVPSTPVLHVI- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + + RL +++ AC+ L DV + +++ET +N+YDG+ ++ A I ++RT Sbjct: 155 DNGQRVPLDEARLRGLIDSACANLGADVHAAPIVAETLRNLYDGVPMDEVYKASILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR LL + REVL Q +M Y YF ++I++GV L Sbjct: 215 LIEKDPDYTYATARLLLHTIVREVLG------QDVVPADMGPAYAAYFPQFIQKGVDNEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ +DLV L L RD F+YLGLQ LYDRYFLH+ +RIE+PQ FFMRVAMGL Sbjct: 269 LDPRLLQYDLVRLGAALDAGRDQQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ Sbjct: 329 ALNEPDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP V Sbjct: 449 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSSVP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL+G +FE AY YE +A RGEIK R + A LWRK+LTMLFETGHPWITFKD CN Sbjct: 509 DLHDLFGADFEKAYVAYEEKAARGEIKPSRTVQATDLWRKILTMLFETGHPWITFKDACN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLAST 624 +RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NL+ H + + D+ KL T Sbjct: 569 VRSPQQHAGVVHSSNLCTEITLNTSDAETAVCNLGSVNLVRHLKDGPNGKELDHAKLRKT 628 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I TA+R+LDNVIDIN + +EKA+ SN HR +GLGLM FQ +L+ L IPYAS AVE AD Sbjct: 629 ISTAMRMLDNVIDINYYAVEKARNSNMRHRPVGLGLMAFQDSLYELRIPYASQAAVEFAD 688 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743 SME I ++A AS ELAQERG YSS+ GSLWD+G+ PID++ LL + R + ++R + Sbjct: 689 RSMEAICYYAYWASTELAQERGKYSSYPGSLWDRGILPIDTLDLLEKARGGYVEVDRAAT 748 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD L++++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N Sbjct: 749 LDWDALRQKIARDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVIN 808 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV +LK+ LWD+ M+ DLK+ GS+ I+R+P D+K +++TAFE+ P WL+E+ASRR Sbjct: 809 GYLVRDLKRLGLWDDVMVMDLKHFKGSLHPIDRVPQDVKALYSTAFEVAPTWLVEAASRR 868 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT VE ST+ +L Sbjct: 869 QKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQL 926 Query: 924 NAV 926 NAV Sbjct: 927 NAV 929 >gi|326315614|ref|YP_004233286.1| ribonucleoside-diphosphate reductase subunit alpha [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372450|gb|ADX44719.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 983 Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/903 (58%), Positives = 668/903 (73%), Gaps = 15/903 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++ + LT+ V L++ Sbjct: 36 QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVRETVDTLTQSVVRALMRSRPG 95 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QD VE SLM+ GHH++ R YVLYRE R+ RA Q H + P P L ++ Sbjct: 96 GGTFHIEDVQDNVELSLMRGGHHEVARAYVLYRERRTQERAHQQHDRQPVPSTPVLHVI- 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + + RL +++ AC+ L QDV + +++ET +N+YDG+ ++ A I ++RT Sbjct: 155 DNGQRVPLDEARLRGLIDSACANLGQDVHAAPIVAETLRNLYDGVPMDEVYKASILAART 214 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR LL + REVL Q +M Y YF ++I++GV L Sbjct: 215 LIEKDPDYTYATARLLLHTIVREVLG------QDVVPADMGPAYAAYFPQFIQKGVDNEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ +DL L L RD F+YLGLQ LYDRYFLH+ +RIE+PQ FFMRVAMGL Sbjct: 269 LDPRLLQYDLARLGAALDAGRDQQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ Sbjct: 329 ALNEPDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP V Sbjct: 449 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSSVP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL+G +FE AY YE +A RGEIK R + A LWRK+LTMLFETGHPWITFKD CN Sbjct: 509 DLHDLFGADFEKAYVAYEEKAARGEIKPSRTLQATDLWRKILTMLFETGHPWITFKDACN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLAST 624 +RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NL+ H + + D+ KL T Sbjct: 569 VRSPQQHAGVVHSSNLCTEITLNTSDAETAVCNLGSVNLVRHLKDGPNGKELDHAKLRKT 628 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I TA+R+LDNVIDIN + +EKA+ SN HR +GLGLM FQ +L+ L IPYAS AVE AD Sbjct: 629 ISTAMRMLDNVIDINYYAVEKARNSNMRHRPVGLGLMAFQDSLYELRIPYASQAAVEFAD 688 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743 SME I ++A AS ELAQERG YSS+ GSLWD+G+ PID++ LL + R + ++R + Sbjct: 689 RSMEAICYYAYWASTELAQERGKYSSYPGSLWDRGILPIDTLDLLEKARGGYVEVDRATS 748 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD L++++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N Sbjct: 749 LDWDALRQKIARDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVIN 808 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV +LK+ LWD+ M+ DLK+ GS+ I+R+P D+K +++TAFE+ P WL+E+ASRR Sbjct: 809 GYLVRDLKRLGLWDDVMVMDLKHFKGSLHPIDRVPQDVKALYSTAFEVAPTWLVEAASRR 868 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT VE ST+ +L Sbjct: 869 QKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQL 926 Query: 924 NAV 926 NAV Sbjct: 927 NAV 929 >gi|260551038|ref|ZP_05825243.1| ribonucleotide reductase [Acinetobacter sp. RUH2624] gi|260405986|gb|EEW99473.1| ribonucleotide reductase [Acinetobacter sp. RUH2624] Length = 944 Score = 1102 bits (2849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/950 (56%), Positives = 687/950 (72%), Gaps = 40/950 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFKRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R ++++ P L++ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASAR-----QQTNSNHHPTLQVT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DANGQLQPLDLSALKATVNRAAEGLEGIEVEAIIDETVKNLYNGVKESDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L ++L L + A ++ ++ ++++GV+ L Sbjct: 186 RIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA--------FLKKGVELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA T++TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVRGGVLDREKLARTVKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S EAV ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W++++ASRRQKW Sbjct: 777 VRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 P---------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 + + T + +P +C+ D +CE CQ Sbjct: 895 KPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 944 >gi|89902116|ref|YP_524587.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodoferax ferrireducens T118] gi|89346853|gb|ABD71056.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens T118] Length = 981 Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/908 (58%), Positives = 674/908 (74%), Gaps = 22/908 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+P+KI+ A+MKAF+AV G + S V++ + LT+ + L++ + Sbjct: 36 QIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRESVDGLTQGVIHALMRSRPA 95 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE LM+ GHH++ R YVLYRE+R+ RA Q + A AP L ++ Sbjct: 96 GGTFHIEDVQDQVELGLMRGGHHEVARAYVLYREKRTQERAQQLIAT--AATAPLLHVV- 152 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G I + RL+ I+E AC+GL D+ + +L+ET +N+YDG+ ++ A I ++RT Sbjct: 153 DKGGRIVLDLARLKGIIESACAGLGADIKPEPILAETMRNLYDGVPMEEVYKASILAART 212 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR L + EVL + +M Y +YF ++I++G+ L Sbjct: 213 LIEKDPDYTYATARLLFHTIANEVLG------RDVVQADMAQAYVDYFPQFIKKGIDHEL 266 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E + FDL L LK ERD F+YLGLQ LYDRYFLH+ +RIE+PQAFFMRVAMGL Sbjct: 267 LDERLQQFDLQRLGAALKAERDLKFDYLGLQTLYDRYFLHVGKARIELPQAFFMRVAMGL 326 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ Sbjct: 327 SLGEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 386 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 387 ENALLSKFAGGLGNDWTRVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 446 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV + WTLFSP+ V Sbjct: 447 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMRRVMEKGQWTLFSPNNVP 506 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G +FE AY YE +A RGEI+ R + A LWRKMLTMLFETGHPWITFKD CN Sbjct: 507 DLHDKFGADFEKAYVAYEEKAARGEIRPARTVQAADLWRKMLTMLFETGHPWITFKDACN 566 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---------NQFDYD 619 IRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NLL H N D+ Sbjct: 567 IRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKNAPAGSADGAKVLDHA 626 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL TI TA+R+LDNVIDIN + ++KA+ +N HR +GLG+M FQ +L+ L IPYAS A Sbjct: 627 KLQKTITTAMRMLDNVIDINFYAVKKARDANMRHRPVGLGVMAFQDSLYELRIPYASDAA 686 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738 V AD SME I ++A AS ELA+ERG Y+S+KGSLWDQG+ PID++ +LA R + + Sbjct: 687 VAFADTSMEAICYYAYWASTELARERGQYTSYKGSLWDQGILPIDTLDMLARERGGYVEV 746 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +R+S L W+ L+K++ GMRNSNC AIAPTATI+NI GV SI+P + NL VKSN+SG+ Sbjct: 747 DRSSTLDWEALRKKIAKDGMRNSNCTAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGE 806 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FT++NS+LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P D+K ++ATAFEI+ WL+E Sbjct: 807 FTIINSYLVQDLKRLGLWDDVMVMDLKHFDGSLNPIDRVPADVKALYATAFEIETRWLVE 866 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR+ SAT EKST+ Sbjct: 867 AAARRQKWIDQAQSLNIYMGGASGKKLDDTYKLAWIRGLKTTYYLRTMSATHAEKSTVTA 926 Query: 919 VDGKLNAV 926 G++NAV Sbjct: 927 --GRMNAV 932 >gi|319764327|ref|YP_004128264.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus denitrificans BC] gi|330826375|ref|YP_004389678.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus denitrificans K601] gi|317118888|gb|ADV01377.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus denitrificans BC] gi|329311747|gb|AEB86162.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus denitrificans K601] Length = 970 Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/947 (57%), Positives = 680/947 (71%), Gaps = 33/947 (3%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++++ LT+ V L++ S Sbjct: 35 QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVREVVDELTQAVVRALMRSRPS 94 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE LM+ HH++ R YVLYRE R+ RA + P P L ++ Sbjct: 95 GGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKKEQL--LPQMPALYVL- 151 Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D G I + RL+ ++E AC+ L DV + + +ET +N+YDG+ ++ A I ++RT Sbjct: 152 DKGQRIELDILRLQALIESACANLGSDVQAAPIAAETLRNLYDGVPMDEVYKASILAART 211 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P Y TAR LL + REVL Q M Y F ++I +GV L Sbjct: 212 LIEKDPGYTYATARLLLHTIVREVLG------QDVAPAGMAAAYAANFPQFIRKGVDNEL 265 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++DFDL L LK RD F+YLGLQ LYDRYFLH+ +RIE+PQAFFMRVAMGL Sbjct: 266 LDPRLLDFDLQRLGQALKAGRDLQFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGL 325 Query: 329 ALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AL+E T RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTVPD+L GI+ Sbjct: 326 ALREGDPKTTGSARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDELGGIY 385 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV NDTAVAVNQGGKR Sbjct: 386 ESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVNDTAVAVNQGGKR 445 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLE+WH+DVEEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV WTLFSP Sbjct: 446 KGAVCAYLESWHLDVEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFSP 505 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +V DLHDLYG+ FE AY YE + D GE+++F+++ AV LWRKML+MLFETGHPWITFK Sbjct: 506 SDVPDLHDLYGQAFERAYTAYEAKVDSGELQLFKRVPAVDLWRKMLSMLFETGHPWITFK 565 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL H + D+DKL T Sbjct: 566 DPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHLKDGAIDHDKLRKT 625 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + TA+R+LDNVIDIN + ++KA+ SN HR +GLGLMGFQ AL+ L IPY+S AV AD Sbjct: 626 VSTAMRMLDNVIDINYYAVDKARDSNLRHRPVGLGLMGFQDALYELRIPYSSDAAVTFAD 685 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743 ESME I ++A AS ELA+ERG YSS++GSLW +G+ P+DS+ LLA+ R + ++RT+R Sbjct: 686 ESMEAICYYAYWASTELARERGTYSSYEGSLWSKGILPLDSLELLAKERGGYVEVDRTTR 745 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV+N Sbjct: 746 LDWDALRSKITQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVIN 805 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV +LK+ LWD+ M+ DLK+ GS+ I+R+P ++K ++ATAFE+ P WL+E+A+RR Sbjct: 806 QYLVRDLKKLGLWDDVMLMDLKHFKGSLHAIDRVPQNVKALYATAFEVAPAWLVEAAARR 865 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT VE ST+ +L Sbjct: 866 QKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQL 923 Query: 924 NAVPV-TDPNSSTH---------------SLGIPSSCTSDTECEVCQ 954 NAV TD S + + D CE CQ Sbjct: 924 NAVSAGTDSQSGALNAAAAAAQTQAGALPATDVKFCAIDDPSCEACQ 970 >gi|160896948|ref|YP_001562530.1| ribonucleotide-diphosphate reductase subunit alpha [Delftia acidovorans SPH-1] gi|160362532|gb|ABX34145.1| ribonucleoside-diphosphate reductase, alpha subunit [Delftia acidovorans SPH-1] Length = 973 Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/896 (58%), Positives = 674/896 (75%), Gaps = 12/896 (1%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 G Q+I+R+G V F P KI+ A+ KAF+AV G + S V++ + LT+ V LL+ Sbjct: 30 GYQIIRRSGDVVPFTPQKIAVALTKAFLAVRGAQGAASASVRETVDELTQAVVRALLRSR 89 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 HIED+QDQVE LM+ GHH + R YVLYR+ R+ RA Q + A A Sbjct: 90 PGGGTFHIEDVQDQVELGLMRGGHHDVARAYVLYRDRRNQERAEQKKAAEAAAAAAAAPA 149 Query: 148 MM----DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202 + D+G + + RL ++E +C L D+ + +++ET +N+YDG+ ++ A Sbjct: 150 PVLHVTDNGQRVPLDQARLLALIEASCRNLNADIQAAPIVAETLRNLYDGVPIEEVFKAS 209 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++RTLIEK+P+Y VTAR LL + REV+ + Q A ++Q Y EYF +I + Sbjct: 210 ILAARTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---DIQAAYAEYFPGFIRK 263 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 GV LL+ ++++DL LA +K ERD F+YLGLQ LYDRYFLH+ +RIE+PQ+FFM Sbjct: 264 GVDNELLNPELLNYDLPRLAAAIKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFM 323 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL+E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTVPDDL G Sbjct: 324 RVAMGLALQEEDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDG 383 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGG Sbjct: 384 IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 443 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLF Sbjct: 444 KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 503 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP +V DLHDL+G FE AY YE +AD GE+K+F++I A+ LWRKML+MLFETGHPW+T Sbjct: 504 SPSDVGDLHDLFGAAFEHAYTAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 563 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDPCN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NL H + D+ KL Sbjct: 564 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 623 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ AL+ + I YAS AVE Sbjct: 624 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 683 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD+SME I ++A AS ELA+ERG YSS+KGSLWDQG+ P+D++ LL + R + ++R+ Sbjct: 684 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGGYVEVDRS 743 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SRL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL VKSN+SG+FTV Sbjct: 744 SRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTV 803 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P D+K ++ATAFE++P WL+E+A+ Sbjct: 804 INQYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKSLYATAFEVEPTWLVEAAA 863 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ SAT++EKST++ Sbjct: 864 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTTSATNIEKSTVQ 919 >gi|262373380|ref|ZP_06066659.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter junii SH205] gi|262313405|gb|EEY94490.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter junii SH205] Length = 944 Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/950 (56%), Positives = 687/950 (72%), Gaps = 40/950 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G + +F+ KIS AI KAF+AVEG+ + S R+ D I LTE + + Sbjct: 11 LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRISQLTEMVMNTFKRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R ++ A P L+I Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATAR-----QQTGANHHPTLQIT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L +E A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DHNGQLQPLDLDALTATIETASEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L +L V T + E L P ++++G++ L Sbjct: 186 RIEQEPNYTYVTARLLCNEL---VGTGLEFLGLSTDTSENDALEP-----FLKKGIELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++FDL L+ ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLNFDLAKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y +YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYTHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H D +KLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ L+A+ R E ++RT RL W Sbjct: 657 VISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++ W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVETRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 -------PV--------------TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 PV + + T + +P +C+ D +CE CQ Sbjct: 895 KPASVEAPVVAAQAVEEKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944 >gi|317402621|gb|EFV83181.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter xylosoxidans C54] Length = 976 Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/907 (57%), Positives = 671/907 (73%), Gaps = 19/907 (2%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+RNG V F+P KI+ A+ KAF+AV G + S RV+++++ LT Q V L+++ Sbjct: 35 IIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGAASARVRELVEQLTTQAVNALVRNRPGG 94 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA----QSHSKSDAPIAPKLK 146 HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAA + K DA + Sbjct: 95 GTFHIEDIQDQVELALMRSGQHDVARAYVLYREKRTQERAAAAAAEGQQKVDAVPQENVL 154 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D G + L + A GL + + S+ +L ET KN+YDG+ ++ + I S Sbjct: 155 HVTDAGVRRPLDIAELRATIVAAGEGLAEFIDSEAILKETVKNLYDGIPVDEVFKSAILS 214 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +R L+EK+P Y++VTAR LL +R+EVL ++ + M Y EYF +I G++ Sbjct: 215 ARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQDGMAARYAEYFPTFIARGIE 268 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 LL + +DL L L +RD F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVA Sbjct: 269 GGLLSPDLASYDLTKLGKALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVA 328 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 MGLAL+ET++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ Sbjct: 329 MGLALRETDREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYD 388 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRK Sbjct: 389 AIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRK 448 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 449 GAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPS 508 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 + DLHD YGK FE AY YE + G++K+F+K+ A+ LWRKML+MLFETGHPWITFKD Sbjct: 509 DCPDLHDKYGKAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITFKD 568 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDK 620 PCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH + D++K Sbjct: 569 PCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHEK 628 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 + T+ A+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ L ++ +PYAS AV Sbjct: 629 IKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAV 688 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739 E AD SME + +HA AS LA+ERG Y S++GSLW +G+ P D++ +L + R + ++ Sbjct: 689 EFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVD 748 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +S L WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+F Sbjct: 749 ESSTLDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEF 808 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 TVVN +LV +LK+ LWDE M++DLKY DGS+ I+R+P +L++++ATAFE++P WL+E Sbjct: 809 TVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVEC 868 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ ATS EKST +G Sbjct: 869 ASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG- 927 Query: 920 DGKLNAV 926 G+LNAV Sbjct: 928 -GELNAV 933 >gi|332530700|ref|ZP_08406631.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella gracilis ATCC 19624] gi|332039868|gb|EGI76263.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella gracilis ATCC 19624] Length = 988 Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/899 (57%), Positives = 673/899 (74%), Gaps = 13/899 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+I+RNG V F+PSKI+ A+MKAF+AV G + S V++ + LT+ V L + Sbjct: 41 QIIRRNGAVVPFEPSKIAVALMKAFLAVHGAQGAASASVRETVDGLTQAVVRALTRSRPG 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE LM+ GHH++ R YVLYR +R++ RA + + P L + Sbjct: 101 GGTFHIEDVQDQVELGLMRGGHHEVARAYVLYRAKRAEERAQHAAQAAPQ--TPVLHVT- 157 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G ++ + RL+ ++E AC+ L DV + +++ET +N+YDG+ ++ A I ++RT Sbjct: 158 DNGQRVALDLNRLQRLIESACANLSADVKADPIVAETLRNLYDGVPLEEVYKAAILAART 217 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR L + +EVL + EM+ Y +YF +I++GV A L Sbjct: 218 LIEKDPDYTYATARLLFHTIAKEVLG------RDVQPSEMKQAYADYFPGFIKKGVDAEL 271 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ ++ +DL L LK ERD F+YLGLQ LYDRYFLH+ +RIE+PQAFFMRVAMGL Sbjct: 272 LNPELLQYDLKRLGAALKSERDQQFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGL 331 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ Sbjct: 332 ALNEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 391 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 392 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 451 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP + Sbjct: 452 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGEWTLFSPSDAP 511 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL+G FE AY YE +A RGE+K + + A+ LWRKML+MLFETGHPWITFKD CN Sbjct: 512 DLHDLFGSAFEKAYVAYEAKAKRGELKPSKTVPAIDLWRKMLSMLFETGHPWITFKDACN 571 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NL H + + D++KL TI TA Sbjct: 572 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLKQHITDGKLDHEKLKKTISTA 631 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN + ++KA+ SN HR +GLG+M FQ AL+ + IPYAS AV+ ADESME Sbjct: 632 MRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMAFQDALYEMRIPYASDAAVQFADESME 691 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747 I ++A AS ELA+ERG YSS++GSLW +G+ P D++ LLA R + ++R++ L W+ Sbjct: 692 AICYYAYWASTELARERGVYSSYQGSLWSKGILPPDTLELLARERGGYVEVDRSATLDWE 751 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+K++ GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+SG+FT++N +LV Sbjct: 752 LLRKKIAADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTIINGYLV 811 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK+ LWDE M+ DLK+ DGS+ I+R+P D+K ++ATAFE++P WL+E+A+RRQKWI Sbjct: 812 KDLKRLGLWDEVMVMDLKHFDGSLLPIDRVPQDIKALYATAFEVEPSWLVEAAARRQKWI 871 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 DQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ SAT EKST+ G+LNAV Sbjct: 872 DQAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTYYLRTTSATQAEKSTVAA--GRLNAV 928 >gi|226953557|ref|ZP_03824021.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter sp. ATCC 27244] gi|226835694|gb|EEH68077.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter sp. ATCC 27244] Length = 944 Score = 1095 bits (2831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/950 (56%), Positives = 685/950 (72%), Gaps = 40/950 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G + +F+ KIS AI KAF+AVEG+ + S R+ D I LTE + + Sbjct: 11 LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R ++ A P L+I Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATAR-----QQTGANHHPTLQIT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L + L +E A +GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L +L L + L + ++++G++ L Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLEFL--------GLPTDTLEGDALETFLKKGIELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y +YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 -------PV--------------TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 PV + + T + +P +C+ D +CE CQ Sbjct: 895 KPASVEAPVVAAQAVEDKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944 >gi|294649453|ref|ZP_06726878.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter haemolyticus ATCC 19194] gi|292824658|gb|EFF83436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter haemolyticus ATCC 19194] Length = 944 Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/950 (56%), Positives = 684/950 (72%), Gaps = 40/950 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G + +F+ KIS AI KAF+AVEG+ + S R+ D I LTE + + Sbjct: 11 LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R ++ A P L+I Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATAR-----QQTGANHHPTLQIT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L + L +E A +GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L +L L + L + ++++G++ L Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLEFL--------GLPTDTLEGDALETFLKKGIELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L +++FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y +YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERGAYS+F+GSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIQTSSDLALERGAYSTFEGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 -------PVT--------DPNSSTHSLG------IPSSCTSDT-ECEVCQ 954 PV P + G +P +C+ D +CE CQ Sbjct: 895 KPASVEAPVVAAQAVEDKKPEAQVEEEGFTTAAPVPMACSIDNPDCEACQ 944 >gi|284032752|ref|YP_003382683.1| ribonucleoside-diphosphate reductase subunit alpha [Kribbella flavida DSM 17836] gi|283812045|gb|ADB33884.1| ribonucleoside-diphosphate reductase, alpha subunit [Kribbella flavida DSM 17836] Length = 806 Score = 1093 bits (2826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/800 (62%), Positives = 633/800 (79%), Gaps = 9/800 (1%) Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215 + N +RL ++V EA +GL V +++L+ET + YDG+ + ++E AL+ ++RT +E+EP Sbjct: 15 ALNVERLRLMVAEASAGLDAVDPELILTETLGSCYDGIPQHEVELALVMAARTYVEQEPQ 74 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 Y++ AR LL+++RREVL V+ +P++A+ +M+ Y YF RY+ G++A LL + Sbjct: 75 YSQAAARLLLDQIRREVLGRVHGEPRQASQADMRTAYAGYFPRYLAVGIEAGLLDHELAS 134 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 FDL LA ++ ERD F +LGLQ LYDRY LHI+ +R E+PQAFF+RVAMG+ALKE ++ Sbjct: 135 FDLDRLAAAIRPERDLDFTFLGLQTLYDRYLLHIDKTRFELPQAFFLRVAMGMALKEHDR 194 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E RA+EFY LLSSF FM STPTLFN+GT PQLSSCFLTTV DDL GIF ++ NA+LAK Sbjct: 195 EARALEFYELLSSFRFMSSTPTLFNAGTTRPQLSSCFLTTVEDDLAGIFTGIRNNALLAK 254 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 YSGGLGNDWTP+RG+GA I GTNG+SQGV+PFLK+ANDTA+AV+QGGKRKGAVCAYLETW Sbjct: 255 YSGGLGNDWTPIRGIGATIRGTNGESQGVVPFLKIANDTAIAVHQGGKRKGAVCAYLETW 314 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H+DVE+FL+LRKNTGD+RRRTHDMNTANW+PDLF++RV +AGWTLFSPDEV LHDLYG Sbjct: 315 HVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFSPDEVPGLHDLYG 374 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 F AYE YER ADRGEI+VFR++ AV LWR+MLT+LFETGHPWITFKD CN+RSPQQH Sbjct: 375 AAFAAAYEQYERAADRGEIRVFRRVRAVDLWRRMLTVLFETGHPWITFKDACNLRSPQQH 434 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 GVVHSSNLCTEITLN++ +ETAVCNLGS+NL+AH D L T+RTAVR+LDNV Sbjct: 435 DGVVHSSNLCTEITLNTTVDETAVCNLGSVNLVAHLTPAGLDAGLLRDTVRTAVRMLDNV 494 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID+N +T +++++N HR +GLGLMGF AL L +PYAS AV AD SME +S+HAI Sbjct: 495 IDVNFYTTPESERANQRHRPVGLGLMGFADALFALRVPYASDAAVAFADTSMEQLSYHAI 554 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVK 754 AS +LA ERG Y ++ GSLW QG+ PIDS+ LL E R +L ++ ++ L WD L+ +V+ Sbjct: 555 EASSDLAAERGTYRTYDGSLWSQGILPIDSVELLREARGGDLDVDTSTTLDWDALRAKVR 614 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRNSN +AIAPTATI+NICGVSQSI+P+Y NL+VKSNMSG+FTV N +LV +LK R Sbjct: 615 RDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFTVANPYLVADLKARG 674 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LWD+ M+ DLKYHDG + IERIP DL+ ++ATAFEIDP WL+ +ASRRQKWIDQ+QSLN Sbjct: 675 LWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAASRRQKWIDQSQSLN 734 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 LY+ EPSGK LD +YR AW GLKTTYYLRS+SAT VEKSTL+G DG+LNAVPV +P ++ Sbjct: 735 LYVSEPSGKALDELYRSAWRHGLKTTYYLRSQSATHVEKSTLRGTDGRLNAVPV-EPVAA 793 Query: 935 THSLGIPSSCTSDTECEVCQ 954 ++ D +CE CQ Sbjct: 794 VCAI-------DDQDCEACQ 806 >gi|262376781|ref|ZP_06070009.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter lwoffii SH145] gi|262308491|gb|EEY89626.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter lwoffii SH145] Length = 945 Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/954 (56%), Positives = 684/954 (71%), Gaps = 47/954 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ ++ S R+ D I+ LTE + + Sbjct: 11 LQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRIEQLTEMVLNTFKRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR---AAQSHSKSDAPIAPKL 145 S +HIE+IQDQVE +LM++G K+ R YV+YRE+RS+ R A H P L Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARSYVIYREQRSEARKQLGAHHH--------PTL 122 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 +I +G L + L V +A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ + Sbjct: 123 QITDAEGKLKPLDLSALTAHVTKAAEGLEGIDVQAIVDETVKNLYNGVKESDISTTMMMA 182 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +RT IE+EPNY VTAR L + L L K + + + Y+++G++ Sbjct: 183 TRTRIEQEPNYTYVTARLLRDDLVATGL--------KFLGLPVDTVEGDALETYLKKGIE 234 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 LL +++FDL LA ++ ER F YLGLQ L+DRYF+H +G R E+PQ FFMRV+ Sbjct: 235 LELLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVS 294 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 MGL+L E +E RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+G Sbjct: 295 MGLSLNEENREDRAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYG 354 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRK Sbjct: 355 AMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRK 414 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P Sbjct: 415 GAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPS 474 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 E DLHDL G EF Y +YE A + + +KI A LWRKML+MLFETGHPWITFKD Sbjct: 475 ETPDLHDLTGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKD 533 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 CN+RSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGSINL+ H D +KLA T+ Sbjct: 534 VCNLRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSINLVQHVQGGVLDREKLARTV 593 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 +TAVR+LDNVIDIN + + +A+ SN HR +G+G+MGFQ AL+ +++ Y S AVE ADE Sbjct: 594 KTAVRMLDNVIDINYYAVPQARNSNLKHRPVGMGIMGFQDALYEMNVAYGSDAAVEFADE 653 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743 SME IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E ++RT R Sbjct: 654 SMEVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQR 713 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N Sbjct: 714 LDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVIN 773 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++ W++++ASRR Sbjct: 774 PYLVRALKERGLWDAVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVETRWIVDAASRR 833 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G L Sbjct: 834 QKWIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGAL 891 Query: 924 NAVPVT----------------DPNSSTHSLG------IPSSCTSDT-ECEVCQ 954 NAV P + G +P +C+ D +CE CQ Sbjct: 892 NAVKPATVAAPVVAAAPVVEAQKPEAPAEEEGFAQAAPVPMACSIDNPDCEACQ 945 >gi|325121076|gb|ADY80599.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter calcoaceticus PHEA-2] Length = 944 Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/950 (56%), Positives = 686/950 (72%), Gaps = 40/950 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R ++++ P L++ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASAR-----QQTNSNHHPTLQVT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L+ V +A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L +L LT + ++ ++ ++++GV+ L Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPENNALEA--------FLKKGVELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++DFDL L+ ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 ---------------------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 + T + +P +C+ D +CE CQ Sbjct: 895 KPATVEAAAVAAPVVEAKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944 >gi|293609144|ref|ZP_06691447.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829717|gb|EFF88079.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 944 Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/950 (56%), Positives = 686/950 (72%), Gaps = 40/950 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R ++++ P L++ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASAR-----QQTNSNHHPTLQVT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L+ V +A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L +L LT + ++ ++ ++++GV+ L Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPENNALEA--------FLKKGVELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++DFDL L+ ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 ---------------------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 + T + +P +C+ D +CE CQ Sbjct: 895 KPATVEAAAVAAPVVEVKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944 >gi|255318311|ref|ZP_05359546.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter radioresistens SK82] gi|262379055|ref|ZP_06072211.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter radioresistens SH164] gi|255304623|gb|EET83805.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter radioresistens SK82] gi|262298512|gb|EEY86425.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter radioresistens SH164] Length = 942 Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/948 (55%), Positives = 686/948 (72%), Gaps = 38/948 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ ++ S RV D I LTE + + Sbjct: 11 LQVIKRTGEVAAFDAEKISVAIGKAFLAVEGQQSADSSRVHDRITQLTEMVMNTFKRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ Q+ ++ A P L+I Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRN-----QARQQTGAHHHPTLQIT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L + +L+ +E+A GL+ + + ++ ET KN+Y+G+ SD+ T ++ ++RT Sbjct: 126 DSKGQLQPLDMSKLQTTLEKASEGLEGIDVQAIIDETVKNLYNGVKASDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L ++L L + ++ ++++G++ L Sbjct: 186 RIEQEPNYTYVTARLLRDELVATGLAFLGLSEDTPESEALEA--------FLKKGIELEL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LDAELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E ++E RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 AVQEDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTISDDLYNIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G F Y YE A + + +KI A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGSAFAERYAYYESVAKEQNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H + D +KLA T++TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKLDREKLARTVKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ L + Y S AVE ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGSDAAVEFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R + ++RT RL W Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDRMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 + L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 NTLRTKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIPD+LK I ATAFE++P W++++ASRRQKW Sbjct: 777 VRALKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 -------------------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 V + + + +P +C+ D +CE CQ Sbjct: 895 KATAAAPVAAAPVVETKPETVAEEDGFAQAAPVPMACSIDNPDCEACQ 942 >gi|262280151|ref|ZP_06057936.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202] gi|262260502|gb|EEY79235.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202] Length = 943 Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/949 (56%), Positives = 686/949 (72%), Gaps = 39/949 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R Q++S P L++ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQ-QTNSNHH----PTLQVT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L+ + +A GL+ + + ++ ET KN+Y+G+ E+D+ T ++ ++RT Sbjct: 126 DANGQLQPLDLSALQATIAKAAEGLEGIDVQAIVDETVKNLYNGVKETDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L +L L + + ++ ++++GV+ L Sbjct: 186 RIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPENTALEA--------FLKKGVELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++DFDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 L E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 TLNEQNKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ ++I Y S A++ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQKW Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 --------PVTDP------------NSSTHSLGIPSSCTSDT-ECEVCQ 954 PV P + T + +P +C+ D +CE CQ Sbjct: 895 KPATVEAAPVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943 >gi|299771425|ref|YP_003733451.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter sp. DR1] gi|298701513|gb|ADI92078.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter sp. DR1] Length = 943 Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/949 (56%), Positives = 686/949 (72%), Gaps = 39/949 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LTE + + Sbjct: 11 IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R ++++ P L++ Sbjct: 71 SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTAR-----QQTNSNHHPTLQVT 125 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +G L + L+ V +A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++RT Sbjct: 126 DANGQLQPLDLSALQATVAKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EPNY VTAR L +L L + ++ ++ ++++GV+ L Sbjct: 186 RIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPENNALEA--------FLKKGVELDL 237 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++DFDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL Sbjct: 238 LSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA++ Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P E Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD CN Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+TA Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ ++I Y S A++ ADESME Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESME 656 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 IS++AI S LA ERG+YS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL W Sbjct: 657 VISYYAIETSSNLAVERGSYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V LK R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQKW Sbjct: 777 VRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNAV Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894 Query: 927 P--------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 + + T + +P +C+ D +CE CQ Sbjct: 895 KPATVEAAAVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943 >gi|149375673|ref|ZP_01893442.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola DG893] gi|149360075|gb|EDM48530.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola DG893] Length = 921 Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/931 (57%), Positives = 676/931 (72%), Gaps = 34/931 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKRNG + FD SKIS A+ KAF+AVEG A+ S R+ D ++ +T Q + + + K Sbjct: 20 LQVIKRNGALVGFDASKISVAVTKAFLAVEGDEAAGSARIHDSVERVTHQVMQAISRRLK 79 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA--PKLK 146 + VHIEDIQDQVE +LM++ K+ R YVLYRE + RA S AP+ P L Sbjct: 80 AGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREAHAQERA------SLAPVEAHPTLT 133 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + +G + +++ VE A L+ + + ++ +N+YDG++E ++ +ALI ++ Sbjct: 134 VKKANGEAAPLDLGLMKVQVERASQELEGIDGESLVEGALRNLYDGIAEEEVLSALIMTA 193 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 R IE+EP+Y+ VTAR LLE+LR E T + K P E +YP+ +IE+G+ Sbjct: 194 RGRIEQEPDYSAVTARLLLEQLRLETATAL-KLPLSLPLAE---IYPQALSTFIEQGIHY 249 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 LL E+M FDL L LK ERD+ F +LGLQ LYDRYFL+ G R+E+PQ FFMRV+M Sbjct: 250 ELLDEAMAAFDLERLGAALKPERDYQFGFLGLQTLYDRYFLNWKGDRLELPQVFFMRVSM 309 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL+E + RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL GI+GA Sbjct: 310 GLALQEDDPNARAIEFYDLLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVQDDLEGIYGA 369 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +++NAML+K++GGLGNDWTPVR LG+HI GTNG SQGV+PFLKV NDTAVAVNQGGKRKG Sbjct: 370 IRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGSSQGVVPFLKVVNDTAVAVNQGGKRKG 429 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ + WTLFSP++ Sbjct: 430 AVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRSDQDWTLFSPND 489 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 DLHDLYG F Y+ YE A RGEI +F+ +SA LWRKMLT+LFETGHPWITFKDP Sbjct: 490 TPDLHDLYGNAFRERYQEYEAMAARGEITLFKTVSAKQLWRKMLTVLFETGHPWITFKDP 549 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL AH N + D +L T+ Sbjct: 550 CNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSINLAAHVHNGELDVQRLERTVN 609 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TAVR+LDNV+DIN + + +A+ SN HR +GLGLMGFQ AL+ L++PY S EAVE AD + Sbjct: 610 TAVRMLDNVVDINYYAVPQARNSNFKHRPVGLGLMGFQDALYRLNLPYTSAEAVEFADVA 669 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744 ME IS+ AI AS LA ERGAY +++GSLW +G+ PIDSI LL R E L++N + L Sbjct: 670 MEQISYFAIRASAVLAGERGAYETYEGSLWHEGILPIDSINLLKANRREGDLSLNTDTLL 729 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W +++ + GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN Sbjct: 730 DWTPVRELIARNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNP 789 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 LV +LK LWD M++DLKY DGS+ I+RIP LK +ATAFEID WL+E+A+RRQ Sbjct: 790 SLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAALKARYATAFEIDARWLVEAAARRQ 849 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KW+DQAQSLNLY+ EPSGKKLD +Y+ +W GLKTTYYLRS AT EK+ Sbjct: 850 KWLDQAQSLNLYMAEPSGKKLDELYQLSWERGLKTTYYLRSLGATGAEKT---------- 899 Query: 925 AVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 PV P P C+ D +CE CQ Sbjct: 900 -APVAAPQ--------PQVCSIDEPDCEACQ 921 >gi|134097870|ref|YP_001103531.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharopolyspora erythraea NRRL 2338] gi|291007411|ref|ZP_06565384.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharopolyspora erythraea NRRL 2338] gi|133910493|emb|CAM00606.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharopolyspora erythraea NRRL 2338] Length = 782 Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/782 (65%), Positives = 611/782 (78%), Gaps = 3/782 (0%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 +S+ VL E +N +DG+S +L A I ++R ++E EPNY++VTAR LL++LRRE LT Sbjct: 1 MSADAVLDEVRRNSFDGISADELAIAQIMAARIMVEAEPNYSQVTARLLLDRLRREALTY 60 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295 + P A +M+ Y YF Y+ GV+ L + FDL L L ERD +F + Sbjct: 61 LAGLPDDADQEQMRERYAPYFRDYVARGVELGQLDPELASFDLDRLGAALLPERDMSFGF 120 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 LGLQ LYDRYFLH +G+R E+PQAFFMRVAMGLAL+E ++E RAVEFY LLSSF FMCST Sbjct: 121 LGLQTLYDRYFLHHDGTRYELPQAFFMRVAMGLALREDDREARAVEFYRLLSSFDFMCST 180 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTLFNSGT PQLSSCFLTTV DDL+GIF ++ NAML+KY+GGLGNDWTPVRG+GAHI Sbjct: 181 PTLFNSGTTRPQLSSCFLTTVDDDLHGIFHSISNNAMLSKYAGGLGNDWTPVRGIGAHIR 240 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 GTNG+SQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR Sbjct: 241 GTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 300 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 THDMNTANW+PD FM+RV + WTLFSPDE DLHDLYG F Y YER A+RGEIK Sbjct: 301 THDMNTANWVPDEFMRRVEADGTWTLFSPDETPDLHDLYGTAFAERYRAYERAAERGEIK 360 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V+R++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S + Sbjct: 361 VYRQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSRD 420 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E AVCNLGS+NL H + D+++L T RTAVR+LDNVIDIN +TI +A++SN HR Sbjct: 421 EVAVCNLGSVNLARHVTADGIDHERLERTTRTAVRMLDNVIDINFYTIPEARRSNLRHRP 480 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLGLMGF AL IP +S AVE AD SME IS+HAISAS +LA ERG Y SF+GSL Sbjct: 481 IGLGLMGFSDALFAQRIPVSSQAAVEFADRSMEEISYHAISASADLAAERGRYESFEGSL 540 Query: 716 WDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W QGV PIDS+ LL + RD + ++RT W L++RV+ +GMRNSN MAIAPTATIAN Sbjct: 541 WSQGVLPIDSLALLEQARDGHVDLDRTMTRDWGALRERVRAVGMRNSNVMAIAPTATIAN 600 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 ICGV QSI+P Y+NLYVKSNMSGDFTVVN LV +LK LWDE M++DLK+HDGS+ I Sbjct: 601 ICGVGQSIEPIYRNLYVKSNMSGDFTVVNPHLVADLKAAGLWDEDMLADLKFHDGSLDPI 660 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 RIP +LK+++ATAFE++P WL+E+A+RRQKWIDQAQSLNLY+ PSG+KLD +YR AW Sbjct: 661 SRIPGELKELYATAFEVEPRWLVEAAARRQKWIDQAQSLNLYVAAPSGRKLDELYRLAWR 720 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD--PNSSTHSLGIPSSCTSDTECEV 952 GLKTTYYLRS SAT VEKSTL+G DGKLNAVP T P T ++ + D +CE Sbjct: 721 QGLKTTYYLRSTSATHVEKSTLRGTDGKLNAVPTTPVAPVVPTAAVDGAACSVDDPDCEA 780 Query: 953 CQ 954 CQ Sbjct: 781 CQ 782 >gi|297563528|ref|YP_003682502.1| ribonucleoside-diphosphate reductase, subunit alpha [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847976|gb|ADH69996.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 882 Score = 1066 bits (2758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/765 (66%), Positives = 606/765 (79%), Gaps = 1/765 (0%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220 R+E +V EAC+ L VS++ VL+E + Y G+S++++E AL+ ++R+ +E +P+Y+ V Sbjct: 55 RIEHVVAEACARLTGVSAEKVLTEARRGFYPGISDAEVELALVMAARSFVEVDPDYSYVA 114 Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 AR LL+KLRRE LT + P A EM Y Y Y+ G+ L ++ FDL Sbjct: 115 ARLLLDKLRREALTFISGAPDAAGQSEMGERYAAYLAAYVGRGIDLGQLDPALAKFDLAR 174 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L L+ ERD F +LG+Q LYDRYFLH + R E+PQAFFMRVAMGLAL E ++E RA+ Sbjct: 175 LGAALRPERDEQFTFLGIQTLYDRYFLHSDEVRYELPQAFFMRVAMGLALNEDDREARAI 234 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 EFY LLSSF FM STPTLFNSGT QLSSCFLTTV DDL IF + NAML+KYSGGL Sbjct: 235 EFYELLSSFDFMASTPTLFNSGTVRAQLSSCFLTTVGDDLQAIFHGISNNAMLSKYSGGL 294 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 GNDWTPVRGLG+HI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHID+E Sbjct: 295 GNDWTPVRGLGSHIRGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDIE 354 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLDLRKNTGD+RRRTHDMNTANW+PDLFM+RV Q WTLFSPDEV DLHD YG EF Sbjct: 355 EFLDLRKNTGDERRRTHDMNTANWVPDLFMQRVEQGGSWTLFSPDEVPDLHDKYGAEFAE 414 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 AY +YE +A G IKV + + AV LWR+MLTMLFETGHPWITFKDP N+RSPQQHVGVVH Sbjct: 415 AYAHYEAEAAAGRIKVSKTLPAVDLWRRMLTMLFETGHPWITFKDPSNLRSPQQHVGVVH 474 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SSNLCTEITLN+S++E AVCNLGS+NL H + D ++L T+RTAVR+LDNVID+N Sbjct: 475 SSNLCTEITLNTSADEVAVCNLGSVNLAQHVGPDGLDAERLRRTVRTAVRMLDNVIDVNF 534 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +TI +A+++N HR +GLGLMGFQ AL L P+AS AV ADESME IS++AI AS+E Sbjct: 535 YTIPEARRANMRHRPVGLGLMGFQDALFKLRTPFASDGAVSFADESMELISYYAIEASME 594 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMR 759 LA ERG+Y SF+GSLW +GV PIDS+ LLAE RD +L M+R L WD L++RVKT GMR Sbjct: 595 LAAERGSYESFEGSLWSRGVLPIDSLRLLAESRDGDLDMDRGETLDWDSLRERVKTTGMR 654 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NSN MAIAPTATIANI GVSQSI+P Y+NLYVKSNMSGDFTVVN +LV +LK R LWD+ Sbjct: 655 NSNVMAIAPTATIANITGVSQSIEPVYRNLYVKSNMSGDFTVVNPYLVRDLKARGLWDDD 714 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 M+S LK HDGS+G I+R+P DLK ++ATAFE+DP WL+++ SRRQKWIDQAQSLNLY+ Sbjct: 715 MVSALKMHDGSLGAIDRVPADLKALYATAFEVDPEWLVDAGSRRQKWIDQAQSLNLYMAA 774 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 PSG+KLD +YR+AW GLKTTYYLRS+SAT VEKSTLKG DG+LN Sbjct: 775 PSGRKLDSLYRRAWRSGLKTTYYLRSQSATHVEKSTLKGTDGRLN 819 >gi|126664353|ref|ZP_01735337.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17] gi|126630679|gb|EBA01293.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17] Length = 929 Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 524/929 (56%), Positives = 673/929 (72%), Gaps = 29/929 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKRNG + +F PSKI A+ KAF+AVEG A+ S R+ D + +T+Q V + + K Sbjct: 27 LQVIKRNGNLVNFTPSKIGVAVTKAFLAVEGDQAAGSARINDAVHRVTDQVVQAISRRLK 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + VHIEDIQDQVE +LM++ K+ R YVLYREE + RA H +A P L + Sbjct: 87 AGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERAL--HEPVEA--HPTLTVK 142 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G + + ++ V+ A GL + ++ ++ E+ +N+Y+G+ E+++ +ALI ++R Sbjct: 143 QAGGRTVPLDLGLMKQQVDNAAFGLDGIDAESLVEESIRNLYNGIDEAEVLSALIMTARG 202 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EP+Y+ VTAR LLE+LR E +T + + T + +YP+ +I G++ L Sbjct: 203 RIEREPDYSAVTARLLLEQLRLESVTAL----KLDTSLSLADVYPQALSTFINAGIRYEL 258 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E+M FD+ L LK ERD F +LGLQ LYDRYFLH R+E+PQ FFMRVAMGL Sbjct: 259 LDEAMAAFDMERLGAALKPERDLQFGFLGLQTLYDRYFLHWKEDRLELPQVFFMRVAMGL 318 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L+E + RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL I+G+++ Sbjct: 319 SLREDDPNSRAIEFYDLLSSFDYMSSTPTLFNSGTRHSQLSSCYLTTVDDDLEAIYGSIR 378 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR +GA I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 379 DNAMLSKWAGGLGNDWTPVRAMGARIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAV 438 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ Q+ WTLFSP++ Sbjct: 439 CAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRQDRDWTLFSPNDAP 498 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDLYG F Y++YE A G+I++F+ I A LWRKMLT+LFETGHPWITFKDPCN Sbjct: 499 DLHDLYGNAFRERYQHYEALAAEGKIELFKTIPAKQLWRKMLTVLFETGHPWITFKDPCN 558 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH N + D +L T+ TA Sbjct: 559 LRSPQQHKGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHINNGELDVKRLERTVDTA 618 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +A+ SN HR +GLGLMGFQ AL+ L + Y SP+AVE AD +ME Sbjct: 619 VRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYALRLSYTSPQAVEFADVAME 678 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--AEVRDELAMNRTSRLPW 746 +S+ AI AS LA ERGAY S++GSLW Q + PIDSI L A + +L++N SRL W Sbjct: 679 QLSYFAIRASARLAAERGAYESYEGSLWSQKILPIDSIERLKAARLEGDLSVNTDSRLDW 738 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 ++ + GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN L Sbjct: 739 APVRDLIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSL 798 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK LWD M++DLKY+DGS+ IERIP +LK +ATAFEID WL+E+ASRRQKW Sbjct: 799 VRDLKAEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDARWLVEAASRRQKW 858 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 +DQ QSLNLY+ +PSGKKLD +Y+ AW GLKTTYYLRS AT + A Sbjct: 859 LDQGQSLNLYMAQPSGKKLDELYQLAWERGLKTTYYLRSLGATGANE----------QAA 908 Query: 927 PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 V P P C+ D +CE CQ Sbjct: 909 TVAAPQ--------PQVCSIDEPDCEACQ 929 >gi|254449375|ref|ZP_05062817.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma proteobacterium HTCC5015] gi|198261021|gb|EDY85324.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma proteobacterium HTCC5015] Length = 839 Score = 1061 bits (2744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/746 (66%), Positives = 608/746 (81%), Gaps = 3/746 (0%) Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231 GL+DV + +L++T +N++DG+++ ++ TALI S+RT+IEK+PNY++V+AR LL+ +R E Sbjct: 2 GLEDVDADKILNDTLRNVFDGVAKKEVATALIMSARTMIEKDPNYSQVSARLLLDSMREE 61 Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291 LT + AT EMQ YPEYF YI V+ LL M +FDL L L ERD Sbjct: 62 ALTFLGDGAPAATQAEMQERYPEYFKHYIARAVELELLDGEMHNFDLERLGQALLPERDQ 121 Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 F YLGLQ LYDRYF+H + G R E+PQAFFMRVAMGLA+ E ++E+RA+EFY LLSSF Sbjct: 122 GFTYLGLQTLYDRYFIHDDSGVRFELPQAFFMRVAMGLAINEVDREERAIEFYTLLSSFD 181 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 FM STPTLFNS T PQLSSC+LTTVPDDL GIF A++++AML+K++GGLGNDWT VR L Sbjct: 182 FMSSTPTLFNSATLRPQLSSCYLTTVPDDLDGIFSAVKDDAMLSKFAGGLGNDWTRVRAL 241 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLE+WH+D+EEFL+LRKNTG Sbjct: 242 GAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLESWHLDIEEFLELRKNTG 301 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 DDRRRTHDMNTANWIPDLFMKRV ++ WTLFSP++V DLHDL GK+FE AY YE +AD Sbjct: 302 DDRRRTHDMNTANWIPDLFMKRVAEDGEWTLFSPNDVDDLHDLVGKKFEKAYTAYEAKAD 361 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 GEIK+F+++ AV LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITL Sbjct: 362 SGEIKLFKRVKAVDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITL 421 Query: 591 NSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 N+S E AVCNLGS+N+ H + D KL TI+TA+R+LDNVID N +++ +A++S Sbjct: 422 NTSDMEIAVCNLGSVNMAQHVTEEGELDVAKLERTIKTAMRMLDNVIDYNYYSVPQARRS 481 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR +GLG+MGFQ AL+ + Y S EAVE AD +ME +S++AIS+SV+LA+ERGAYS Sbjct: 482 NIRHRPVGLGIMGFQDALYKKGVAYQSDEAVEFADRAMEAVSYYAISSSVDLAEERGAYS 541 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 SF GSLW +G+ PIDSI +LAE R D L ++R+ + WD L++RV+ GMRNSNCMAIAP Sbjct: 542 SFPGSLWSRGILPIDSIDILAEHRGDFLQVDRSQTMDWDSLRQRVRESGMRNSNCMAIAP 601 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV ELK R+LWD+ M++DLKY+D Sbjct: 602 TATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVKELKARNLWDDVMVNDLKYYD 661 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 GS+ IERIPDDL++I++TAFEID WL+E+ SRRQKWIDQ QSLNLY+ EPSGKKLD + Sbjct: 662 GSVHPIERIPDDLRQIYSTAFEIDARWLVEAGSRRQKWIDQGQSLNLYMSEPSGKKLDNL 721 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKS 914 Y+ AW GLKTTYYLRS AT VEK+ Sbjct: 722 YKLAWARGLKTTYYLRSMGATHVEKT 747 >gi|257055669|ref|YP_003133501.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharomonospora viridis DSM 43017] gi|256585541|gb|ACU96674.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharomonospora viridis DSM 43017] Length = 815 Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/800 (64%), Positives = 621/800 (77%), Gaps = 5/800 (0%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219 +R+ +V EA +GL D S++ VL+E +N+YDG+ +L A I ++RTL+E+EPNY+ V Sbjct: 16 ERVHRVVREAVAGLPDTSAEAVLAELKRNVYDGIRADELALAQIMAARTLVEREPNYSFV 75 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR LL+ LR E + + +P++ + EM Y +YF Y+ G+ +LL E + FDL Sbjct: 76 AARLLLDLLRGEATSYLADEPRQPDYAEMAAGYADYFRDYLRRGIDLQLLDEELAAFDLD 135 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEK 337 LA L+ ERD LGLQ LYDRY L G R E+PQAFFMRVAMGLA++E E++ Sbjct: 136 ILAAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMGLAIREPERDT 195 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 RAVEFY LLS+ FM STPTLFN+GTR PQLSSCFLTTV DDL IF + NA+LAKYS Sbjct: 196 RAVEFYELLSTLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLESIFTGYRNNALLAKYS 255 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GGLGNDWTPVRGLGAHI GT GKSQGV+PFLK+ANDT VAVNQGGKRKGA CAYLETWHI Sbjct: 256 GGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGAACAYLETWHI 315 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV +A WTLFSPDEV DLHDLYG Sbjct: 316 DIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPDEVPDLHDLYGTA 375 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 F Y YE+ AD G+I+VFR++SA LWR+MLTMLFETGHPWITFKDPCN+RSPQQH G Sbjct: 376 FAERYRAYEKAADAGQIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAG 435 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 VVHSSNLCTEITLN+S +E AVCNLGS+NL H + D + L T+RTAVR+LDNVID Sbjct: 436 VVHSSNLCTEITLNTSPDEIAVCNLGSVNLARHIGKDGLDVEALRKTVRTAVRMLDNVID 495 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN +T+ +A++SN HR +GLGLMGF AL L IP AS EAVE AD SME +S+HAISA Sbjct: 496 INFYTVPEARRSNLRHRPVGLGLMGFTDALFELGIPQASDEAVEFADRSMEVLSYHAISA 555 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKT 755 SVELA ERGAY SF GSLW +G+ P+DS+ LLAE R DEL ++ +S L WD L++RV+T Sbjct: 556 SVELAGERGAYPSFDGSLWSRGILPLDSLRLLAEARGEDELDIDTSSTLDWDALRERVRT 615 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 +GMRNSN +AIAPTATI+NICGV QSI+P + NL+VKSNMSG+FTVVN +LV +LK+R L Sbjct: 616 VGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPYLVRDLKRRGL 675 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 WDE M+ +LK HDG +G IER+P++LKK++ATAFE D WL+++A+RRQKWIDQAQSLNL Sbjct: 676 WDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDAAARRQKWIDQAQSLNL 735 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 YL EPSG+ LD +YR AW GLKTTYYLRSR+AT VEKSTL+G DG+LNAV P Sbjct: 736 YLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLRGTDGRLNAVAPAVPAVPA 795 Query: 936 HSLGIPSSC-TSDTECEVCQ 954 + G ++C D +CE CQ Sbjct: 796 DASGAAAACRIDDPDCEACQ 815 >gi|126640805|ref|YP_001083789.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii ATCC 17978] Length = 885 Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/900 (56%), Positives = 655/900 (72%), Gaps = 43/900 (4%) Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 T TR L S +HIE+IQDQVE +LM++G HK+ R YV+YR++R+ R ++ Sbjct: 5 TFTRRL---PSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASAR-----KDTN 56 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 + P L++ +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ESD+ Sbjct: 57 SNHHPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDI 116 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 T ++ ++RT IE+EPNY VTAR L ++L L + A ++ ++ Sbjct: 117 ATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA-------- 168 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 ++++GV+ LL ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ Sbjct: 169 FLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQ 228 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ D Sbjct: 229 LFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGD 288 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAV Sbjct: 289 DLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAV 348 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 349 NQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGE 408 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGH Sbjct: 409 WTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGH 467 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D Sbjct: 468 PWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDR 527 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KLA T++TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S E Sbjct: 528 EKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDE 587 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AV ADESME IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 588 AVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMF 647 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+S Sbjct: 648 EVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLS 707 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FTV+N +LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W+ Sbjct: 708 GEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWI 767 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 +++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ Sbjct: 768 VDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTI 827 Query: 917 KGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954 G LNAV + + T + +P +C+ D +CE CQ Sbjct: 828 N--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 885 >gi|221124254|ref|XP_002159508.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit [Hydra magnipapillata] Length = 846 Score = 1044 bits (2700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/840 (59%), Positives = 630/840 (75%), Gaps = 14/840 (1%) Query: 107 MQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166 M+ GHH+I R YVLYRE R+ RA Q ++AP AP + ++ D+G + + +L+ + Sbjct: 1 MRGGHHEIARAYVLYRERRTQERAKQV--ATEAPAAPVIHVI-DNGQRVPLDLAQLQFRI 57 Query: 167 EEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225 E ACSGL DV + +L+ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR L Sbjct: 58 ETACSGLGADVKAAPILAETMRNLYDGVPLDEVYKAAILAARTLIEKDPDYTYATARLLF 117 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + REVL + +MQ Y +YF +I+ G+ A LL E + FDL L + L Sbjct: 118 HTISREVLG------RDVAQADMQEAYADYFPGFIKRGIAAELLDEKLQQFDLKRLGSAL 171 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 K RD F+YLGLQ LYDRYFLH +RIE+PQAFFMRVAMGL+L E ++E RA+EFY + Sbjct: 172 KAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGLSLNEIDREARAIEFYEV 231 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT Sbjct: 232 LSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWT 291 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+L Sbjct: 292 RVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLEL 351 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP V DLHDL+G EFE AY Y Sbjct: 352 RKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGAEFEKAYVAY 411 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E +A RGEIK R + A LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLC Sbjct: 412 EEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLC 471 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 TEITLN+S ETAVCNLGS+NLL H + D++KL TI TA+R+LDNVIDIN + ++K Sbjct: 472 TEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTAMRMLDNVIDINYYAVKK 531 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+ SN HR +GLGLM FQ +L+ L IPYAS AVE AD+SME IS++A AS +LA+ER Sbjct: 532 ARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSMEAISYYAYWASTDLARER 591 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y S+KGSLWD+GV P D++ +LA R + ++R+S L W+ L+ ++ GMRNSNC+ Sbjct: 592 GKYHSYKGSLWDKGVLPPDTLDMLANARGGYVEVDRSSTLDWNALRNKIAADGMRNSNCV 651 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPTATI+NI GV SI+P + NL VKSN+SG+FTV+NS+LV +LK+ LWD+ M+ DL Sbjct: 652 AIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLVRDLKRLGLWDDVMVMDL 711 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 K+ DGS+ I+R+P ++K+++ATAFE++ WL+E+A+RRQKWIDQAQSLN+Y+ SGKK Sbjct: 712 KHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWIDQAQSLNIYMAGASGKK 771 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 LD Y+ AWL GLKTTYYLR+ SAT EKST V L+A+ + G PSS Sbjct: 772 LDETYKLAWLRGLKTTYYLRTMSATHAEKST---VTAGLDALQFRHRPDQSVEAGKPSSV 828 >gi|241589541|ref|YP_002979566.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12D] gi|240868253|gb|ACS65912.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12D] Length = 949 Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/948 (55%), Positives = 670/948 (70%), Gaps = 40/948 (4%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG-------ASRSIRVQDIIKNLTEQ 78 + VI+RNG FD SKI+ A+ KAF+ + G S S ++ ++ LT+ Sbjct: 6 VGAYMVIRRNGETVPFDASKIASALAKAFL-YDAHGNLYRPGVVSLSAAQRERVEQLTQA 64 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 L + +S+ HIE +QDQVE +LM++G H++ R YVLYRE S RA Sbjct: 65 VCDALGRRGESSAF-HIEALQDQVELALMRAGEHEVARGYVLYREMASQKRAP------- 116 Query: 139 APIAPKL----KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 AP+A + M +G + F+ IVE +GL+ VS+ + E +N+Y+ Sbjct: 117 APVAGRYDHIKSYRMRNGGVAPFDPSFWIAIVESVVAGLESVSAADLFEEAVRNLYNNAK 176 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLE-KLRREVLTTVYKKPQKATHHEMQCLYP 253 E ++E ALI ++RT IE EP Y K AR +L +L +V + T E+ Y Sbjct: 177 EEEIENALILAARTKIEMEPAYTKAAARLVLALQLGHDVFG------KAITFDELASSYG 230 Query: 254 EYFCRYIEEGVKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E F R I+E V A LL + M FDL LAN ++ ERD ++YLG+Q LYDRY LHI+G Sbjct: 231 EAFARGIKEAVSAELLADDMTRGFDLQRLANAIRPERDCLWDYLGMQTLYDRYLLHIDGK 290 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQAF MRVAMGLA E E+E RA+EFY +LS+F +M STPTLFN+G+ QLSSC+ Sbjct: 291 RIELPQAFLMRVAMGLARNEVEREVRAIEFYEVLSTFDYMASTPTLFNTGSLRSQLSSCY 350 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTT+ DDL GI+ L+ENA+L+K++GGLGNDWT VR LG++I GTNGKSQG++PFLKV N Sbjct: 351 LTTISDDLEGIYDGLKENALLSKFAGGLGNDWTRVRALGSYIKGTNGKSQGIVPFLKVVN 410 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 411 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 470 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + A WTLFSP++V DLHDLYG +FE Y++YE AD G +K F++ AV LWRKML + Sbjct: 471 VHEGADWTLFSPNDVPDLHDLYGSKFEERYKHYEALADAGTLKHFKRAPAVDLWRKMLGL 530 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH Sbjct: 531 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLV 590 Query: 613 NN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D+ KL TIR A+R+LDNVID+N + + KA+ SN HR +GLG+MG+Q AL Sbjct: 591 KQADGSVALDHVKLRRTIRIAMRMLDNVIDMNFYAVSKARTSNMRHRPVGLGMMGYQDAL 650 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 ++L IP+ S AVE +D SME I ++A AS +LA ERG Y S+ GSLW +G+ P DSI Sbjct: 651 YVLGIPFGSEAAVEFSDRSMEAICYYAYEASSDLAVERGVYPSYNGSLWSKGILPFDSID 710 Query: 728 LLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 LL + R E L ++R+S + WD L++++ GMRNSNC+AIAPTATI+NI GVS S +P Sbjct: 711 LLVQERGEGYLDVDRSSSMDWDALREKIGRQGMRNSNCVAIAPTATISNIVGVSASNEPQ 770 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 +QNLYVKSN+SG+FT+VN +LV +LK+ +WDE M+SDLK++DGS+ I+R+P D+K + Sbjct: 771 FQNLYVKSNLSGEFTLVNEYLVADLKKLGIWDEVMLSDLKFYDGSVQKIDRVPADIKARY 830 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ATAFEI+P W +E+ +RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ Sbjct: 831 ATAFEIEPSWSVEAGARRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRT 890 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +ATSVEKST+ G LNAV P+S + S D E VC Sbjct: 891 IAATSVEKSTVP--LGTLNAVA---PSSQMATQQTTQSSEPDVEGRVC 933 >gi|189219088|ref|YP_001939729.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to ATP-cone domains [Methylacidiphilum infernorum V4] gi|189185946|gb|ACD83131.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to ATP-cone domains [Methylacidiphilum infernorum V4] Length = 942 Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/947 (54%), Positives = 663/947 (70%), Gaps = 29/947 (3%) Query: 22 FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQT 79 F + + ++KR+G V FDP +I A+ KAF A GK ++ +D I+ +T Sbjct: 11 FDAHLSALSIVKRDGRVVPFDPHRIRAAVEKAFRADRGKNVGEALSSEDRAAIEEITSAV 70 Query: 80 VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139 V++ + +E IQD VE +LM+ G+H + + Y+LYR +R R ++ Sbjct: 71 VSKSAALAGRGERLEVERIQDLVELTLMELGYHTVAKRYILYRADRGRARTIKNRE---- 126 Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDL 198 + ++ G + + + + EAC GL++ S + + ET + +YD + E D+ Sbjct: 127 --GVSIHMIDKQGRKVPLDLAWIHRTLMEACRGLEESCSWRELAEETVRGLYDEIKEEDV 184 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 A+I ++R+ +EKEP Y V AR +L K+ E L+ V + A +H+ YF Sbjct: 185 VQAMILTARSWVEKEPAYTYVAARLMLGKIYEEALSLVPSIHETAEYHKA------YFPS 238 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI+ GVK L +++F+L LA L+ ERD F YLGLQILYDRY LH RIE PQ Sbjct: 239 YIDFGVKIGRLSPRLLEFNLEKLAQALRLERDRQFSYLGLQILYDRYLLHHEERRIETPQ 298 Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+MRVAMGLAL E E +E A+ FY+ LS F FM STPTLFNS T HPQLSSC+L TV Sbjct: 299 YFWMRVAMGLALNEKEDRELWAIRFYDTLSRFLFMASTPTLFNSATIHPQLSSCYLLTVE 358 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DDL GIF + +NA L+K++GGLGNDWT VR G+ I GTNGKSQGVIPFLKVANDTAVA Sbjct: 359 DDLDGIFKVISDNARLSKWAGGLGNDWTNVRATGSLIRGTNGKSQGVIPFLKVANDTAVA 418 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGA+CAYLETWH+D+E+FL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV QN Sbjct: 419 VNQGGKRKGALCAYLETWHLDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLQNG 478 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTLFSP +V DLH LYGK+FE Y YE+ ADRGEIK+F+++SAV LWRKMLT+LFETG Sbjct: 479 SWTLFSPSDVPDLHHLYGKDFEKRYVEYEQMADRGEIKLFKRVSAVDLWRKMLTLLFETG 538 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616 HPWITFKDP NIRSPQ HVGV++SSNLCTEI LN+S EE AVCNLGSINL AH + + Sbjct: 539 HPWITFKDPSNIRSPQDHVGVINSSNLCTEILLNTSPEEVAVCNLGSINLAAHLDESGEI 598 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D KL TIR AVR+LDNVIDIN + I +A+ +N HR +GLG+MGFQ L++ IPY S Sbjct: 599 DEKKLQETIRIAVRMLDNVIDINFYPIPEARNANLRHRPVGLGIMGFQDVLYIKKIPYGS 658 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +AVE+AD ME +S+HAI +S ELA+ERG+YS+FKGS WD+G+ PID+I LL E R+ Sbjct: 659 EKAVEVADRLMEMVSYHAILSSCELAKERGSYSTFKGSKWDRGLLPIDTIDLLEEQREGF 718 Query: 737 A-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 ++R+ WD ++K++K G+RNS +AIAPTATI+NI GV QSI+PSY+NLYVKSN+ Sbjct: 719 VEVDRSQTKDWDYVRKKIKEQGLRNSCLLAIAPTATISNITGVCQSIEPSYKNLYVKSNL 778 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SGDF +N +LV +LK+ +LWD+ MI DLKY+DGS+ IERIP +LK+++ATAFEIDP + Sbjct: 779 SGDFISINPYLVADLKKLNLWDQEMIDDLKYYDGSVKPIERIPQELKELYATAFEIDPYF 838 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 +IE ASRRQKWID QSLNLY+DEPSG K+ +Y W GLKTTYYLRSR+AT+VEKST Sbjct: 839 IIECASRRQKWIDMGQSLNLYVDEPSGWKISQMYILCWKKGLKTTYYLRSRAATTVEKST 898 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGI--------PSSCTSDTECEVCQ 954 L D + S + S I ++C+ D ECE CQ Sbjct: 899 L---DVNARGIQPRWMKSKSPSANIRVERNEKEKNACSLDPECESCQ 942 >gi|282890381|ref|ZP_06298909.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499763|gb|EFB42054.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 921 Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/927 (55%), Positives = 661/927 (71%), Gaps = 19/927 (2%) Query: 40 SFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQHNKSALIVHIED 97 SFD +I AI KAF A GA +++ +Q + +T ++ +L + V IE Sbjct: 2 SFDGERIRLAITKAFRAELLLGADQALPEEIQKVTNGITSAVISSILSLTRDE-PVPIEK 60 Query: 98 IQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLIS 156 IQD VE LMQ G+H++ R Y+LYREER RA ++ ++ + L + DGT Sbjct: 61 IQDLVEKELMQEGYHQVARGYILYREERKRARAFKETAIPANEQVKSTLYVTYPDGTKSP 120 Query: 157 FNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215 N+++++ +E AC+ +++ + + ++ E K++YDG+ +L + IFS+R+ IEKEP Sbjct: 121 LNTQKMQSKMEHACADFKELCNPQELIEEMLKHLYDGVLFKELNESAIFSARSKIEKEPA 180 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 Y V AR LL+ + EV Q+ E+ L+ +F +YI +GV A+ L + Sbjct: 181 YNYVAARLLLQDIYNEVFE------QECHPSEVANLHVSHFEQYIRKGVMAKRLTPELFG 234 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE- 334 +DL LA +L RD F Y+G+Q LYDRY +H+ RIE PQ F+MRVAMGLAL E E Sbjct: 235 YDLEKLAQNLDSSRDKLFTYIGVQTLYDRYLIHVKNDRIETPQYFWMRVAMGLALNEKEN 294 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 +E+RA+EFYN+LS FHF+ STPTLFNSG+ HPQLSSC+L+TV DDL IF + +NA L+ Sbjct: 295 REERAIEFYNVLSQFHFISSTPTLFNSGSLHPQLSSCYLSTVQDDLVNIFKVIADNASLS 354 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K+SGG+GNDWT +R GA IHGTNG +QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLET Sbjct: 355 KWSGGIGNDWTNIRATGATIHGTNGLTQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLET 414 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH+D+E+F++LRKNTGD+RRRTHDMNTANWIPDLFMKRV + + WTLF+P + DLHDLY Sbjct: 415 WHLDIEDFVELRKNTGDERRRTHDMNTANWIPDLFMKRVREQSVWTLFNPSDTPDLHDLY 474 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE Y YER A G+IK+F+ I A+ LWRKM+TMLFETGHPW+TFKDP NIRSPQ Sbjct: 475 GIEFEKRYCEYERLAQEGKIKLFKVIPAMDLWRKMITMLFETGHPWMTFKDPSNIRSPQS 534 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 H GVVHSSNLCTEI LN+S ETAVCNLGSINL AH + D LA TIRTA+R+LDN Sbjct: 535 HAGVVHSSNLCTEILLNTSENETAVCNLGSINLAAHIKGDFLDEQFLAKTIRTAMRMLDN 594 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VIDIN + ++A++SN HR +GLGLMGFQ AL+ I Y S EAVE AD SME IS+HA Sbjct: 595 VIDINYYPTKEARESNLRHRPVGLGLMGFQDALYHFRIAYDSQEAVEFADASMEMISYHA 654 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELKKRV 753 I AS ELA+ERG YSS++GS W QG+ PIDSI LL E + L M+RTS+ W ++K + Sbjct: 655 ILASTELAKERGVYSSYRGSKWSQGILPIDSIALLDNERKGYLHMDRTSKKDWSVVRKEI 714 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 + GMRN N MAIAPTATIA+I G+SQSI+P++ LYVKSN+SG+F V+N +LV +LK+R Sbjct: 715 QKHGMRNCNTMAIAPTATIAHISGLSQSIEPTFSLLYVKSNLSGEFAVLNEWLVKDLKER 774 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 DLW++ M+ +LKY+DGS+ IE+ P+DLK ++ TAFEI+P WLIE ASRRQKWID QSL Sbjct: 775 DLWNQDMLDELKYYDGSVQEIEQFPEDLKGLYKTAFEIEPKWLIECASRRQKWIDMGQSL 834 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL----KGVDGK-LNAVPV 928 NLY++ P G+KL +Y AW GLKTTYYLRS++AT VEKSTL KG+ + + + Sbjct: 835 NLYVNAPDGRKLSDMYLLAWEKGLKTTYYLRSKAATQVEKSTLDINKKGIQPRWMKSRSA 894 Query: 929 TDPNSSTHSLGIPSSCT-SDTECEVCQ 954 + IP SC+ S ECE CQ Sbjct: 895 SGSIRVERDSSIPKSCSLSGDECESCQ 921 >gi|268316002|ref|YP_003289721.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus marinus DSM 4252] gi|262333536|gb|ACY47333.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus marinus DSM 4252] Length = 926 Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/935 (56%), Positives = 669/935 (71%), Gaps = 34/935 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 V+KR+G SFD +I RA+ KAF A A S + + I+ LT V + + Sbjct: 15 VVKRDGRRVSFDAERIRRALEKAFRATLELPADAPLSAELSEEIEALTGAVV----RWCR 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 V +E+IQD+VE +LM++G + + R Y+LYRE R++ R Q +L Sbjct: 71 DRAEVSVEEIQDEVERTLMRAGRYAVARRYILYREARAEARRRQ-----------QLTYR 119 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DGT F + L +E AC GL DV ++V E + +Y G+ E +L+ ALI ++RT Sbjct: 120 RADGTEAPFPHEALRARIEAACDGLDDVDPELVREELLRTVYPGIPEDELDRALILAART 179 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EP+Y V AR LL+ L REV + +P + C F Y+E GV+ Sbjct: 180 HIEREPDYTYVAARLLLDALYREV----FGRPIPPSEQAEACR--AGFRAYLEHGVRLGR 233 Query: 269 LHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 L E ++ FD+ LA L ERD F +LGLQ LYDRY LH G R E+PQ +MRVAM Sbjct: 234 LDERLLRTFDIDRLAAALHPERDRRFTFLGLQTLYDRYLLHEPEGRRFELPQYLWMRVAM 293 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E + RA++FY LLSSF FM STPTLFN+GT HPQLSSC+LTTV DDL IF A Sbjct: 294 GLALAEDDPTARAIQFYELLSSFRFMNSTPTLFNAGTPHPQLSSCYLTTVQDDLGAIFKA 353 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +++NA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGVIPFLK+ NDTAVAVNQGGKRKG Sbjct: 354 IRDNALLSKWAGGLGNDWTPVRALGAHIRGTNGRSQGVIPFLKIVNDTAVAVNQGGKRKG 413 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLE WH+D+EEFL+LR+NTGD+RRRTHDMNTA WIPDLFM+RV + WTLFSPDE Sbjct: 414 AVCAYLEVWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFSPDE 473 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V DLHDLYG+ F YE+YER+A+ G I+ +R+I AVALWRKML+MLFETGHPW+TFKDP Sbjct: 474 VPDLHDLYGRAFRERYEHYEREAEAGRIRNWRRIEAVALWRKMLSMLFETGHPWLTFKDP 533 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTI 625 CNIRSPQ HVGVVHSSNLCTEITLN+S EE AVCNLGSINL+AH + D +KL TI Sbjct: 534 CNIRSPQDHVGVVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGELDREKLRDTI 593 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 RTAVR+LDNVID+N + I +A+ SN HR IGLGLMGFQ L+ + YAS AVE+ADE Sbjct: 594 RTAVRMLDNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVELADE 653 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRL 744 MEFI++ A AS +LA ERGAY +FKGS WD+G+ P+D++ LL AE + + + RT+RL Sbjct: 654 FMEFIAYCAYEASSDLAAERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEPVPVPRTARL 713 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD L+++++ GMRNSN +AIAPTATIANICGVS SI+P+Y+NLYVKSN+SG+FT +N Sbjct: 714 DWDALREKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFTQLNP 773 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK R LWD+ M+ DLKY+DGS+ I+RIP +LK + TAFEI+P WLIE A+RRQ Sbjct: 774 YLVRDLKARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLIECAARRQ 833 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL----KGVD 920 KWIDQ+QSLNLYL EPSG+KL +Y+ AW +GLKTTYYLR+ +AT +EKSTL +G+ Sbjct: 834 KWIDQSQSLNLYLAEPSGRKLSEMYQLAWQLGLKTTYYLRALAATQIEKSTLDINRRGIQ 893 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTE-CEVCQ 954 + + P+S +C+ D E CE CQ Sbjct: 894 PRW--MKSRSPSSDIVVRRDGPACSPDDESCEACQ 926 >gi|87311396|ref|ZP_01093516.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula marina DSM 3645] gi|87285808|gb|EAQ77722.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula marina DSM 3645] Length = 973 Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/948 (53%), Positives = 661/948 (69%), Gaps = 29/948 (3%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR--VQDIIKNLTEQTVTRLLQ 85 ++V KR+G + SFD +I AI KAF A G + + ++D +K+++E + ++ Sbjct: 34 ALEVRKRDGRIISFDVGRIHYAIGKAFRAEIGVADGQELENSLEDQVKSISEAVIDQIES 93 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 S V +E IQD VE LM+ GH + R Y+LYREE + +RA ++ I P++ Sbjct: 94 RPFSRDGVDVESIQDAVEIQLMRHGHFSVARRYILYREEHAKLRALRAADSDGNLIPPRI 153 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + +DG F++ RL V A GL Q+ S++ ++ ETY+++YDG++ ++ A+I Sbjct: 154 NVKQEDGAKEPFDATRLRRRVYSAVRGLEQNCSAEELVEETYRSLYDGITPQEIYRAMIL 213 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA--THHEMQCLYPEYFCRYIEE 262 +SR+ IE++P+Y KV AR +L + E + ++ K A T E F YI Sbjct: 214 ASRSRIERDPDYDKVAARLMLMVIYNEAIGRLHPKEDIAEVTRRE--------FSTYIST 265 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G++A L E + DFDL ++ L+ ERD AF YLGLQ +YDRY LHI+G RIE PQ F+M Sbjct: 266 GIEAGRLAERLRDFDLEKISAALRPERDAAFPYLGLQTIYDRYLLHIDGRRIETPQYFWM 325 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLA E KE+RA+EFYN+LS+F F +TPTLFNSGT HPQLSSC+L+TV DDL Sbjct: 326 RVAMGLAWNEENKEERAIEFYNILSTFRFTSATPTLFNSGTLHPQLSSCYLSTVDDDLEH 385 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +NAML+K++GGLGNDWT +R AHI GTNG+SQGVIPFLKV NDTA+AVNQGG Sbjct: 386 IFKVVSDNAMLSKWAGGLGNDWTNIRATNAHIKGTNGQSQGVIPFLKVVNDTAIAVNQGG 445 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC+YLE+WH+DVEEFLDLRKNTGDDRRRTHDM+TANWIPDLFMKRV +NA WTLF Sbjct: 446 KRKGAVCSYLESWHLDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVRENADWTLF 505 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPDE DLHDL G +F+ YE YE+ AD G++++FR++ A LWRKMLT LFETGHPWIT Sbjct: 506 SPDETPDLHDLCGSKFQARYEEYEKLADEGKMRLFRRLPANELWRKMLTRLFETGHPWIT 565 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KDP N+RSPQ HVGVVHSSNLCTEI LN+S +E AVCNLGSINL+AH N + D +KL Sbjct: 566 WKDPSNVRSPQDHVGVVHSSNLCTEILLNTSKDEIAVCNLGSINLVAHIRNGELDLEKLQ 625 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+ TA R+LDNVIDIN + +AK SN HR +G+GLMGFQ AL L + YAS EAVE Sbjct: 626 ETVTTAARMLDNVIDINYYPTGEAKTSNARHRPVGMGLMGFQDALSSLGVSYASQEAVEF 685 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741 AD SME IS+ AI AS +LA ERG Y ++ GS WD+G+ PIDS+ +L + R + ++R+ Sbjct: 686 ADRSMEAISYFAILASSQLAAERGTYETYAGSKWDRGILPIDSLDILEQERGLPIEVDRS 745 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S L W ++ V+ GMRNSN MAIAPTATI+ I GVSQSI+P+Y+NL+VKSN+SG+F Sbjct: 746 STLDWQVVRDSVREHGMRNSNVMAIAPTATISTIVGVSQSIEPTYKNLFVKSNLSGEFPQ 805 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +N +V +LK LWD M+ +KY+DG + I+R+PD LK + TAFE+D WLIE + Sbjct: 806 LNIRMVQDLKAEGLWDSDMVEAIKYYDGELTEIDRVPDHLKLRYLTAFEVDSKWLIECGA 865 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK---- 917 RRQKWID QSLNLY+ +PSG+KL +Y AW +GLKTTYYLR+ SAT VEKST+ Sbjct: 866 RRQKWIDMGQSLNLYMAQPSGRKLHDMYMLAWNVGLKTTYYLRTLSATQVEKSTIDVNRF 925 Query: 918 GV------DGKLNAVPVTDPNSSTHSLG-----IPSSCTSDTECEVCQ 954 G+ + +A D + L P +C D +CE CQ Sbjct: 926 GIQPRWMKNASASADIRVDRGDAAEILDELPPEQPKACNLDGDCESCQ 973 >gi|325110862|ref|YP_004271930.1| ribonucleoside-diphosphate reductase, subunit alpha [Planctomyces brasiliensis DSM 5305] gi|324971130|gb|ADY61908.1| ribonucleoside-diphosphate reductase, alpha subunit [Planctomyces brasiliensis DSM 5305] Length = 953 Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/893 (55%), Positives = 648/893 (72%), Gaps = 13/893 (1%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR--VQDIIKNLTEQTVTRLLQHNK 88 V KR+G + SFD ++I RA+ AF A S+ + V +I+ ++++ ++ Sbjct: 10 VRKRDGRIASFDMNRIGRAMENAFRAELNLADSQPLDEDVISVIRQISDEVGNQIAPSAS 69 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS--KSDAPIAPKLK 146 S V +E++QD VE LM+ GH+++ R Y++YR E + +RA + + P + Sbjct: 70 SRQGVDVEELQDAVEMLLMKHGHYRVARRYIVYRAEHAKLRALRGEEGFADEGPERVQTN 129 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205 + +DDGTL+ F+ R+ ++ AC GL+D+ S++ + E K++YDG++ ++ A+I + Sbjct: 130 VTLDDGTLVPFDPNRIMTKLQLACRGLEDICSAEDLHEEVLKSIYDGITTKEIYRAMILA 189 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 SR+ IE++P Y KV R +L+ + + L + P+K + +Y F YI +G+ Sbjct: 190 SRSRIERDPAYDKVAGRLMLDVIYHDALGSA-PSPKK-----LASVYRHQFEHYIIDGIA 243 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 A L + DF+L +A+ L+ RD F+YLGLQ +YDRY +HI+G RIE PQ F+MRVA Sbjct: 244 AERLSPGLRDFNLTQIADALEPSRDALFQYLGLQTIYDRYLIHIDGRRIEAPQFFWMRVA 303 Query: 326 MGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 MGLA+ E E KE+RA++FYN+LSSF F +TPTLFNS T HPQLSSC+L+TV DDL IF Sbjct: 304 MGLAVNEGEQKEERAIQFYNMLSSFRFTSATPTLFNSATLHPQLSSCYLSTVSDDLEHIF 363 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + +NA L+K++GGLGNDWT +R AHIHGTNG+SQGVIPFLKV NDTAVAVNQGGKR Sbjct: 364 KVISDNAKLSKWAGGLGNDWTNIRATNAHIHGTNGQSQGVIPFLKVVNDTAVAVNQGGKR 423 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+TANWIPDLFMKRV N WTLFSP Sbjct: 424 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMHTANWIPDLFMKRVEANDEWTLFSP 483 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DEV DLHDL GKEFE Y YE+ A+ GE+ + RK++AV LWRKMLT LFETGHPWIT+K Sbjct: 484 DEVPDLHDLTGKEFENRYLEYEKMAEDGEMGLTRKVNAVELWRKMLTRLFETGHPWITWK 543 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DP N+RSPQ H GVVHSSNLCTEI LN+S ETAVCNLGSINL H + + L T Sbjct: 544 DPSNVRSPQDHCGVVHSSNLCTEILLNTSPTETAVCNLGSINLKTHIVDGALNLQMLEET 603 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + TA+R+LDNVIDIN + E+A +N HR +G+GLMGFQ AL + + Y PEAVE AD Sbjct: 604 VFTAMRMLDNVIDINYYPTEEAANANKRHRPVGMGLMGFQDALLAMDLSYTCPEAVEFAD 663 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743 SME IS+ AI AS +LA ERG YSS++GS WD+G+ PID++ LL E R + + ++R+S Sbjct: 664 RSMEAISYFAILASSQLAAERGRYSSYEGSKWDRGLLPIDTLDLLEEARGQAIEVDRSSS 723 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD ++K V GMRNSNCMAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+FT VN Sbjct: 724 LDWDVVRKSVAENGMRNSNCMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEFTQVN 783 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 S LV ELK R LWD M+ LKY+DG++ +I+R+P D+K+ + TAFE+DP WL+E A+RR Sbjct: 784 SVLVTELKSRGLWDSDMLDALKYYDGTLADIDRVPADIKERYQTAFEVDPYWLVECAARR 843 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QKW+D QSLNLY+ P+GK+L +Y AW GLKTTYYLR+ +AT VEKST+ Sbjct: 844 QKWLDMGQSLNLYMQAPNGKRLHDMYFDAWKKGLKTTYYLRTLAATQVEKSTV 896 >gi|149173740|ref|ZP_01852369.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces maris DSM 8797] gi|148847270|gb|EDL61604.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces maris DSM 8797] Length = 949 Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/949 (53%), Positives = 656/949 (69%), Gaps = 34/949 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMA----VEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 V KR G FD S I RAI AF A + + IR++ I + E + Sbjct: 10 VTKRGGRTAPFDASLIGRAISNAFRAELNLADNQPLDDEIRME--IPEMVESVANEIASA 67 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS------HSKSDAP 140 + V +E IQD VE LM+ GH++I R Y++YR ER+ +RA + S+S Sbjct: 68 ASTDAGVEVEKIQDVVEMMLMRRGHYRIARRYIVYRAERAKLRALRGSSDLVEESESIKS 127 Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLE 199 P+ +++ DGT + F+ R+ + +AC GL+ D S++ +L E ++++DG+S +L Sbjct: 128 TTPRFHVVLTDGTKVPFDEARILARLSDACRGLEGDCSAEALLEEVMRSIFDGISVEELY 187 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 A+I ++RT IE++P Y V +R +L+ + + L P +E+ LY + F ++ Sbjct: 188 RAMILAARTRIERDPAYDTVASRLMLKIIYNDALGNA---PSDV--NELNQLYVDRFPKF 242 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 +E+G+ A+ L + FDL +A L+ +RD F+YLGLQ ++DRY LHI G RIE PQ Sbjct: 243 LEDGIAAKRLTPDLHKFDLNRIALALEPKRDHLFQYLGLQAIFDRYLLHIGGRRIETPQY 302 Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRV+MGLA++E + RA+EFYN+LSSF F +TPTLFNS T HPQLSSC+L+TV D Sbjct: 303 FWMRVSMGLAIQEEGDATGRAIEFYNILSSFRFTSATPTLFNSATLHPQLSSCYLSTVND 362 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL IF + +NA L+K++GGLGNDWT +R +HI GTNG+SQGVIPFLKV NDTAVAV Sbjct: 363 DLDHIFKCVADNAKLSKWAGGLGNDWTQIRATNSHISGTNGQSQGVIPFLKVVNDTAVAV 422 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC+YLETWH+DVEEFLDLRKNTGDDRRRTHDM+TANWIPDLFM+RV ++A Sbjct: 423 NQGGKRKGAVCSYLETWHMDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMRRVREDAE 482 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSP++V DLHDLYG +FE Y YER + GEIK+FR+ISAV LWRKMLT LFETGH Sbjct: 483 WTLFSPNDVPDLHDLYGHDFEKRYAEYERMTETGEIKLFRRISAVELWRKMLTRLFETGH 542 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PWIT+KD N+RSPQ HVGVVHSSNLCTEI LN+S +ETAVCNLGS+NL H + Q D Sbjct: 543 PWITWKDASNLRSPQDHVGVVHSSNLCTEILLNTSRDETAVCNLGSVNLKLHIVDGQLDL 602 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 L T+RTA+R+LDNVIDIN + +A+ SN HR +GLG+MGFQ AL I YAS + Sbjct: 603 GMLEETVRTAMRMLDNVIDINYYPTPEARNSNTKHRPVGLGIMGFQDALLAQGISYASMQ 662 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELA 737 AVE AD SME IS+ AI AS ELA ERG Y S+ GS WD+G+ PID++ L + R + Sbjct: 663 AVEFADASMEAISYFAILASSELAGERGRYGSYTGSKWDRGLLPIDTLDLYEKERGIPVE 722 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++R +RL W ++ + GMRNSN MAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG Sbjct: 723 VDRQARLDWQVVRNSIAANGMRNSNVMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSG 782 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FT VN LV++LK DLWD M+ LKY+DGS+ IERIPD+LK + TAFE++P W I Sbjct: 783 EFTQVNRQLVDDLKAVDLWDADMLESLKYYDGSVQEIERIPDELKARYLTAFEVEPKWTI 842 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E A+ RQKWID QSLNLYL EPSGKKL +Y AW GLKTTYYLR+ +AT VEKST+ Sbjct: 843 ECAAHRQKWIDMGQSLNLYLAEPSGKKLHEMYMLAWERGLKTTYYLRTLAATQVEKSTVD 902 Query: 918 ----GVDGKL--NAVPVTD------PNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + NA D P ++ + G SC D +CE CQ Sbjct: 903 VNKFGIQPRWMKNASASGDIQVDREPAATMVTPG--ESCNLDGDCEACQ 949 >gi|15834834|ref|NP_296593.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum Nigg] gi|270285000|ref|ZP_06194394.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum Nigg] gi|270289023|ref|ZP_06195325.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum Weiss] gi|301336398|ref|ZP_07224600.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum MopnTet14] gi|14195148|sp|Q9PL93|RIR1_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|7190252|gb|AAF39086.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia muridarum Nigg] Length = 1047 Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/941 (52%), Positives = 641/941 (68%), Gaps = 22/941 (2%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + VI+R G F+P KIS A+ KAF A + V++ + LT++ V + + Sbjct: 116 QSLSVIRRCGTTVHFNPMKISAALEKAFRATDRIEGMTPDFVREEVNALTQKIVAEIEER 175 Query: 87 -NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK--SDAPIAP 143 ++ + IE IQD VE LM GH+ + Y+LYRE R+ VR + + +AP Sbjct: 176 CSQQDSRIDIEQIQDIVEQQLMVVGHYATAKNYILYREARARVRDNRVEDQIVEEAPSEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETAL 202 +++ DG+ +L + ACS + + +L++ + N Y G+ ES++ A Sbjct: 236 TFEVLSKDGSTYMITHSQLLARLARACSRFPETTDAALLTDMAFSNFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L + +++ +Y ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLLDVVYKEALD------RSRGDEDLEQVYRDHFKRYIME 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LAN + RD F Y+G+Q LYDRYF H +G R+E PQ F+M Sbjct: 350 GDSYRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLALKE +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 410 RVAMGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNGKSQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGDDRRR HD+NTA+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++++K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGS+NL+ H ++ D +KL+ Sbjct: 650 FKDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R D L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W+ ++ ++ GMRN MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IER+PD +K I TAFEI+P W++E A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS VD Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF---VD 1006 Query: 921 GKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 + + + S GI C+ + CEVCQ Sbjct: 1007 INKRGIQPRWMKNKSASAGIVVERASKTPVCSLEEGCEVCQ 1047 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + +++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLENSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+YV+YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYINGLQDVARDYVVYRDDRKAHREKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT + FN ++ +E+A Sbjct: 118 LSVIRRCGTTVHFNPMKISAALEKA 142 >gi|166154171|ref|YP_001654289.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 434/Bu] gi|166155046|ref|YP_001653301.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335415|ref|ZP_07223659.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis L2tet1] gi|165930159|emb|CAP03643.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis 434/Bu] gi|165931034|emb|CAP06597.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1047 Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/942 (52%), Positives = 640/942 (67%), Gaps = 24/942 (2%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 -NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPIAPK 144 ++ + IE IQD VE LM GH+ I + Y+LYRE R+ VR + S + IA + Sbjct: 176 CSQQDRRIDIEKIQDIVEQQLMVVGHYAIAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 145 -LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETAL 202 +++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ A Sbjct: 236 AFEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++R IEKEP+YA V A LL+ + +E L + Y + + H + +F RYI Sbjct: 296 IMAARANIEKEPDYALVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKRYIA 348 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ F+ Sbjct: 349 EGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFW 408 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 409 MRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLV 468 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAVNQG Sbjct: 469 NIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQG 528 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+NTA+WIPDLF KR+ Q WTL Sbjct: 529 GKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNTASWIPDLFFKRLQQKGTWTL 588 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+M+FETGHPW+ Sbjct: 589 FSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMVFETGHPWM 648 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL Sbjct: 649 TFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKL 708 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 709 SETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVE 768 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMN 739 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 769 FADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMD 828 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+F Sbjct: 829 TSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEF 888 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 T+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE Sbjct: 889 TIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIEC 948 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS V Sbjct: 949 ASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF---V 1005 Query: 920 DGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 D + + + S GI C+ + CE CQ Sbjct: 1006 DINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142 >gi|237798940|ref|ZP_04587401.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806193|ref|ZP_04592897.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021794|gb|EGI01851.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027306|gb|EGI07361.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] Length = 748 Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/752 (62%), Positives = 571/752 (75%), Gaps = 22/752 (2%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 AR L++ LR E L + ATHHEM LY + Y+ G+K LL+ + +FDL Sbjct: 1 ARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEK 59 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E +E RA+ Sbjct: 60 LGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAI 119 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGL Sbjct: 120 EFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGL 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 GNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+E Sbjct: 180 GNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIE 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ Sbjct: 240 EFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQE 299 Query: 521 AYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 YE YE + G++K+F+ I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVV Sbjct: 300 RYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVV 359 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 HSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ AVR+LDNVIDIN Sbjct: 360 HSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDIN 419 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SME +S++AI AS Sbjct: 420 YYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASC 479 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIG 757 +LA ERGAY +F+GSLW +G+ P+DS +L E R E ++++ L W ++ RV+ G Sbjct: 480 DLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-G 538 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD Sbjct: 539 IRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWD 598 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ Sbjct: 599 SVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYI 658 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV + Sbjct: 659 AGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSA 716 Query: 938 LGIP--------------SSCTSD-TECEVCQ 954 + P +C D +CE CQ Sbjct: 717 ITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 748 >gi|297748956|gb|ADI51502.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis D-EC] gi|297749836|gb|ADI52514.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis D-LC] Length = 1053 Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + Sbjct: 122 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 181 Query: 84 -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141 Q ++ + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S + I Sbjct: 182 CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 238 Query: 142 APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199 A + ++++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ Sbjct: 239 AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 298 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A LL+ + +E L + Y + + H + +F R Sbjct: 299 LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 351 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ Sbjct: 352 YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 411 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D Sbjct: 412 IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 471 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAV Sbjct: 472 NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 531 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q Sbjct: 532 NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 591 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGH Sbjct: 592 WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 651 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PW+TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D Sbjct: 652 PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 711 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL+ TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS E Sbjct: 712 EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 771 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AVE AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L Sbjct: 772 AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 831 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S Sbjct: 832 QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 891 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FT+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+ Sbjct: 892 GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 951 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IE ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS Sbjct: 952 IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1010 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 VD + + + S GI C+ + CE CQ Sbjct: 1011 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1053 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 13 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 72 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 73 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 123 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 124 LSVVRRCGTVVHFNPMKISAALEKA 148 >gi|296436382|gb|ADH18556.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/9768] gi|296438241|gb|ADH20402.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/11074] gi|297140742|gb|ADH97500.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/9301] Length = 1047 Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 84 -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141 Q ++ + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S + I Sbjct: 176 CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232 Query: 142 APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199 A + ++++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ Sbjct: 233 AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A LL+ + +E L + Y + + H + +F R Sbjct: 293 LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ Sbjct: 346 YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D Sbjct: 406 IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAV Sbjct: 466 NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q Sbjct: 526 NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGH Sbjct: 586 WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PW+TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D Sbjct: 646 PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL+ TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS E Sbjct: 706 EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AVE AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L Sbjct: 766 AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S Sbjct: 826 QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FT+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+ Sbjct: 886 GEFTIPNVYLIEKLKKLGVWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IE ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS Sbjct: 946 IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 VD + + + S GI C+ + CE CQ Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142 >gi|15605562|ref|NP_220348.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis D/UW-3/CX] gi|237803259|ref|YP_002888453.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis B/Jali20/OT] gi|255311667|ref|ZP_05354237.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 6276] gi|255317968|ref|ZP_05359214.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 6276s] gi|7388066|sp|O84834|RIR1_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|6578115|gb|AAC68424.2| Ribonucleoside Reductase, Large Chain [Chlamydia trachomatis D/UW-3/CX] gi|231274493|emb|CAX11289.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis B/Jali20/OT] gi|296437313|gb|ADH19483.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/11222] Length = 1047 Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 84 -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141 Q ++ + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S + I Sbjct: 176 CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232 Query: 142 APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199 A + ++++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ Sbjct: 233 AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A LL+ + +E L + Y + + H + +F R Sbjct: 293 LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ Sbjct: 346 YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D Sbjct: 406 IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAV Sbjct: 466 NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q Sbjct: 526 NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGH Sbjct: 586 WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PW+TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D Sbjct: 646 PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL+ TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS E Sbjct: 706 EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AVE AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L Sbjct: 766 AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S Sbjct: 826 QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FT+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+ Sbjct: 886 GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IE ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS Sbjct: 946 IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 VD + + + S GI C+ + CE CQ Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142 >gi|237805180|ref|YP_002889334.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis B/TZ1A828/OT] gi|231273480|emb|CAX10396.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis B/TZ1A828/OT] Length = 1047 Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 84 -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141 Q ++ + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S + I Sbjct: 176 CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232 Query: 142 APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199 A + ++++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ Sbjct: 233 AEEAIEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A L++ + +E L + Y + + H + +F R Sbjct: 293 LACIMAARANIEKEPDYAFVAAELLIDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ Sbjct: 346 YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D Sbjct: 406 IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAV Sbjct: 466 NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q Sbjct: 526 NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGH Sbjct: 586 WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PW+TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D Sbjct: 646 PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL+ TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS E Sbjct: 706 EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AVE AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L Sbjct: 766 AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S Sbjct: 826 QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FT+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+ Sbjct: 886 GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IE ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS Sbjct: 946 IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 VD + + + S GI C+ + CE CQ Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142 >gi|76789572|ref|YP_328658.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis A/HAR-13] gi|76168102|gb|AAX51110.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis A/HAR-13] Length = 1047 Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 84 -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141 Q ++ + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S + I Sbjct: 176 CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232 Query: 142 APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199 A + ++++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ Sbjct: 233 AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A L++ + +E L + Y + + H + +F R Sbjct: 293 LACIMAARANIEKEPDYAFVAAELLIDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ Sbjct: 346 YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D Sbjct: 406 IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAV Sbjct: 466 NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q Sbjct: 526 NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGH Sbjct: 586 WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PW+TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D Sbjct: 646 PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL+ TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS E Sbjct: 706 EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AVE AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L Sbjct: 766 AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S Sbjct: 826 QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FT+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+ Sbjct: 886 GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IE ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS Sbjct: 946 IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 VD + + + S GI C+ + CE CQ Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142 >gi|89898044|ref|YP_515154.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila felis Fe/C-56] gi|89331416|dbj|BAE81009.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydophila felis Fe/C-56] Length = 1045 Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/944 (52%), Positives = 641/944 (67%), Gaps = 34/944 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI--------IKNLTEQTV 80 V V++R+G + F+P KIS A+ KAF A ++++ D+ I NLT + V Sbjct: 118 VSVMRRDGNLVRFNPMKISAALEKAFRA--------TLKITDVLLQEILSEINNLTNKIV 169 Query: 81 TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140 L + IE IQD VE LM +GH+ + + Y+LYRE RS +R + Sbjct: 170 EETLAKCSREQTIDIEAIQDIVETQLMIAGHYDVAKNYILYREARSRIREHKQEIAVQEE 229 Query: 141 IAPKL-KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDL 198 I ++ ++ DGT N +L AC ++ L++ + N Y G+ ES++ Sbjct: 230 IVEEVYDVVKSDGTTYQINKAQLTEKFVWACRRFPKTTNPHTLADMAFANFYSGIKESEI 289 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A LL+ + +E + H+ +YF + Sbjct: 290 VLACIMAARANIEKEPDYAYVAAELLLDVVCQEAIGKSIMDADLVEAHK------QYFKQ 343 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI +G + RL + + ++DL LA L RD F Y+G+Q LYDRY G R+E Q Sbjct: 344 YILDGDQYRL-NPRLKEYDLDALAEALDISRDHQFSYMGVQTLYDRYLNQYEGRRLETTQ 402 Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+MRV+MGLAL E E K A+ FYNLLSSF + +TPTLFNSG RH QLSSC+L+TV Sbjct: 403 IFWMRVSMGLALNEGEDKTSWAITFYNLLSSFRYTPATPTLFNSGMRHSQLSSCYLSTVQ 462 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DDL I+ + +NAML+K++GG+GNDWT VR G+ I GTNGKS GVIPF+KVANDTAVA Sbjct: 463 DDLAHIYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSHGVIPFIKVANDTAVA 522 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGA C YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q Sbjct: 523 VNQGGKRKGATCVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKG 582 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTLFSPD+V LH+ YG EF+ YE YER+ D GEIK+++KI A LWRKML+ML+ETG Sbjct: 583 TWTLFSPDDVPGLHEAYGFEFDKLYEEYERKVDTGEIKLYKKIPAEDLWRKMLSMLYETG 642 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 HPWITFKDP NIRS Q H GVV SNLCTEI LNSS ETAVCNLGS+NL+ H N D Sbjct: 643 HPWITFKDPSNIRSAQDHAGVVRCSNLCTEILLNSSESETAVCNLGSVNLVEHIKNGDID 702 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + L TI A+R+LDNVIDIN + ++A +N THRA+GLG+MGFQ AL+ L+I YASP Sbjct: 703 EEMLGETISIAIRILDNVIDINFYPTQEAANANLTHRAVGLGMMGFQDALYKLNISYASP 762 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DE 735 EAVE AD+S E I+++A+ +S LA+ERG YSS+KGS WD+G PID+I LL E R D+ Sbjct: 763 EAVEFADKSSELIAYYALLSSSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEDK 822 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 L M+ + R W +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+ Sbjct: 823 LLMDTSCRKDWAPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNL 882 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+FT+ N +L+ +LKQ LWD M+ DLKY DGS+ IERIPDDLKKI TAFEI+P W Sbjct: 883 SGEFTIPNVYLIEKLKQLGLWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEW 942 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LIE ASRRQKW+D QS+NLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS Sbjct: 943 LIECASRRQKWLDMGQSVNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSF 1002 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSS-----CTSDTECEVCQ 954 + + + + ++ST S+ + + C+ + CE CQ Sbjct: 1003 IDINKRGIQPRWMKNKSAST-SIVVERTRETPVCSLEEGCESCQ 1045 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG F+ +I +A+ AF + + ++ I ++T Q V ++Q + Sbjct: 11 IVKRNGMFVPFNQDRIFQALEAAFRDTRSLEDTSPLPKDLEKSISSITRQVVNEVVQKIR 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L SG + R Y++YR++ + R HS S +M Sbjct: 71 EGQVVTVERIQDMVENQLYVSGMQDVARNYIIYRDQHKERRKGSWHSVS---------VM 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSG---LQDVSSKIVLSETYKNMYDGLSESDL 198 DG L+ FN ++ +E+A + DV + +LSE N+ + + E L Sbjct: 122 RRDGNLVRFNPMKISAALEKAFRATLKITDVLLQEILSEI-NNLTNKIVEETL 173 >gi|297621806|ref|YP_003709943.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia chondrophila WSU 86-1044] gi|297377107|gb|ADI38937.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia chondrophila WSU 86-1044] Length = 918 Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/935 (51%), Positives = 638/935 (68%), Gaps = 31/935 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 + + V KR+ +T F+P +I AI AF V + ++ Q II + E + ++ Sbjct: 8 QKISVRKRDKQITPFNPERIKNAISSAFRDVWNLQSYHTLDKAQQVIIGQVFEAVIEKIR 67 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 + +E IQD VE LM+ H+K+ + Y+LYRE R+ R + AP Sbjct: 68 CEKPFDTPIDVERIQDYVELILMRQEHYKVAKSYILYRENRAKARQQKEEE------APA 121 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203 +++ + +G ++++ ++L++ ++ +C + + SS+ ++ ++D +S + A I Sbjct: 122 IRVKLINGDSVAYSQEKLKLSLKRSCQDFEPLCSSEELMKAIEPQLFDRISSEQIRQAAI 181 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++++LIEKEP Y KV A LL+K+ RE+ + + F YI++G Sbjct: 182 LAAKSLIEKEPAYDKVAANILLQKIYREIESLPFSN----------------FSSYIQKG 225 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 V+A+ LH ++ FD L +++ERD F Y GLQ LYDRY + I+ E+PQ F+MR Sbjct: 226 VEAKRLHSDLLGFDHRLLEEAMEHERDRQFSYQGLQTLYDRYLIRISEQVAELPQFFWMR 285 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 V+MGLAL ET+K +AVEFY++LSSF ++ STPTLFNSGT HPQLSSC+L+TV DDL I Sbjct: 286 VSMGLALNETDKNSKAVEFYHVLSSFDYISSTPTLFNSGTCHPQLSSCYLSTVQDDLNDI 345 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 F + ++A L+K++GG+GNDWT VR AHI+GTNGKSQGVIPFLKV NDTAVAVNQGGK Sbjct: 346 FRVISDDAKLSKWAGGIGNDWTNVRATQAHINGTNGKSQGVIPFLKVVNDTAVAVNQGGK 405 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGA+C YLETWH+D+ EFLDLRKNTGDDRRRTHDM+TANWIPDLFMKRV ++ WTLFS Sbjct: 406 RKGAICCYLETWHLDLPEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVEEDGEWTLFS 465 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 PDEV DLHDLYG+ F+ YE+YER+A G+IK +R A+ LWRKML+ LFETGHPWIT+ Sbjct: 466 PDEVPDLHDLYGRAFDKRYEHYEREAKAGKIKQYRTFKAIDLWRKMLSRLFETGHPWITW 525 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623 KDP NIR Q+H GV+HSSNLCTEI L +S EETAVCNLGS+NL H + D L Sbjct: 526 KDPSNIRGNQKHAGVIHSSNLCTEILLPTSKEETAVCNLGSVNLRNHIKEGKLDVSHLEK 585 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI TA+R+LDNVIDIN + +A++SN HR IGLG+MGFQ AL+L+ IPY S EA+ A Sbjct: 586 TIATAIRMLDNVIDINFYPTPEARESNLRHRPIGLGMMGFQDALYLMEIPYCSQEAIAFA 645 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTS 742 D SME IS+ AI AS LA+ERG+Y SFKGS WD G+FP ++ LL E R ++ +++ S Sbjct: 646 DSSMETISYFAIKASSLLAKERGSYPSFKGSNWDLGLFPHQTMALLEEERGIKIPIDQCS 705 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L + ++ GMRNS+ +AIAPTATI+ I GVSQSI+P Y NL+ KSN+SG+FT V Sbjct: 706 SRDWKTLLEIIRQNGMRNSHVLAIAPTATISQIVGVSQSIEPQYTNLFTKSNLSGEFTSV 765 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV LK +LWD+ M+ +LKYHDGS+ I RIP ++++ TAFE+ WLI A+ Sbjct: 766 NHYLVETLKSLNLWDQEMLDELKYHDGSVQAIPRIPQEVRERFRTAFEVGAEWLIRCAAA 825 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWID QSLNLYL EPSG+KLD +YR AW +GLKTTYYLR+R+AT VEKSTL K Sbjct: 826 RQKWIDMGQSLNLYLTEPSGRKLDEMYRLAWKLGLKTTYYLRTRAATQVEKSTLDI--NK 883 Query: 923 LNAVPVTDPNSSTHSLGIP--SSCT-SDTECEVCQ 954 + P N S S P C+ D CE CQ Sbjct: 884 FDIQPKWMKNKSASSSIAPRQGQCSIDDPTCEACQ 918 >gi|255507449|ref|ZP_05383088.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis D(s)2923] gi|289525873|emb|CBJ15355.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis Sweden2] gi|296435458|gb|ADH17636.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis E/150] gi|296439175|gb|ADH21328.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis E/11023] Length = 1047 Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/945 (52%), Positives = 639/945 (67%), Gaps = 30/945 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 84 -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141 Q ++ + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S + I Sbjct: 176 CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232 Query: 142 APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199 A + ++++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ Sbjct: 233 AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A LL+ + +E L + Y + + H + +F R Sbjct: 293 LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H R+E PQ Sbjct: 346 YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQ 405 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D Sbjct: 406 IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + +NAML+K++GG+GNDWT VR GA I GTNG+SQGVIPF+KV NDTAVAV Sbjct: 466 NLVNIYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q Sbjct: 526 NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGH Sbjct: 586 WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PW+TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D Sbjct: 646 PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL+ TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS E Sbjct: 706 EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AVE AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L Sbjct: 766 AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S Sbjct: 826 QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FT+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+ Sbjct: 886 GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IE ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS Sbjct: 946 IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 VD + + + S GI C+ + CE CQ Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142 >gi|255349231|ref|ZP_05381238.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 70] gi|255503768|ref|ZP_05382158.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 70s] Length = 1047 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/945 (52%), Positives = 639/945 (67%), Gaps = 30/945 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 84 -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141 Q ++ + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S + I Sbjct: 176 CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232 Query: 142 APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199 A + ++++ DG+ + +L + ACS + + +L++ + N Y G+ ES++ Sbjct: 233 AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258 A I ++R IEKEP+YA V A LL+ + +E L + Y + + H + +F R Sbjct: 293 LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YI EG RL E FDL LA+ + RD F Y+G+Q LYDRYF H R+E PQ Sbjct: 346 YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQ 405 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+MRVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D Sbjct: 406 IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + +NAML+K++GG+GNDWT VR GA I GTNG+SQGVIPF+KV NDTAVAV Sbjct: 466 NLVNIYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q Sbjct: 526 NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGH Sbjct: 586 WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PW+TFKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D Sbjct: 646 PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL+ TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS E Sbjct: 706 EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 A+E AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L Sbjct: 766 AIEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S Sbjct: 826 QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FT+ N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+ Sbjct: 886 GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IE ASRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS Sbjct: 946 IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954 VD + + + S GI C+ + CE CQ Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG FD ++I +A+ AF + ++ I+++T Q V ++ Sbjct: 7 KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 Q +V +E IQD VE L +G + R+Y++YR++R R S Sbjct: 67 QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 L ++ GT++ FN ++ +E+A Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142 >gi|283779061|ref|YP_003369816.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula staleyi DSM 6068] gi|283437514|gb|ADB15956.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula staleyi DSM 6068] Length = 945 Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/937 (52%), Positives = 637/937 (67%), Gaps = 27/937 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQHN 87 QV KR+G + FD ++I AI KA A G A+ + V I + TE+ V R Sbjct: 24 QVRKRDGRLARFDLARIGTAITKAVTAELGAAAAHELPAHVAQSITDYTER-VARWCDLQ 82 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 + + +E IQD+VE LM +G H++ R YVLYRE +Q+H + A ++ Sbjct: 83 EQ---LAVESIQDEVERVLMTAGEHRVARRYVLYRE-------SQAHKRK----ASATQV 128 Query: 148 MMDDGTLISFNSKRLEMIVEEACS-GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + G L + LE + +AC Q + + ++ +++ ++ + L A I + Sbjct: 129 RLASGELTALPINALEHWIAQACELHGQAPQAAAITADIVRSLPTEVTPTQLFDATILAL 188 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP--QKATHHEMQCLYPEYFCRYIEEGV 264 R+ +E EP + V A+ LL++ ++L + + E + Y YF Y+ V Sbjct: 189 RSRVELEPVFTYVAAKLLLDRSDSQLLQNHHGAAILTPLSPSERRAGYQRYFPEYVRAAV 248 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 LHESM+D++L +A + ERD YLG+Q LYDRYFL G R+E+PQ F+MR+ Sbjct: 249 ARGQLHESMLDYNLEAIAAFIVPERDSLLAYLGVQTLYDRYFLAHEGLRVELPQIFWMRI 308 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL E K +R EFY+LLS HF +TPTLFN+GT HPQLSSC+L+TV DDL GIF Sbjct: 309 AMGLALGEQNKLERVKEFYDLLSQLHFTSATPTLFNAGTCHPQLSSCYLSTVEDDLVGIF 368 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+Q+NA+L+K++GGLGNDWT +R LGA I GT GKSQG++PFLKV +D AVAVNQGGKR Sbjct: 369 KAIQDNAILSKWAGGLGNDWTNIRALGATIRGTGGKSQGIVPFLKVVSDAAVAVNQGGKR 428 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+EEFL+LR+ TGD+RRRTHD++TANWIPDLFMKRV WTLFSP Sbjct: 429 KGAVCAYLETWHLDIEEFLELRRTTGDERRRTHDLHTANWIPDLFMKRVLARDTWTLFSP 488 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +EV DLH YG+ FE Y +YE+ AD G IK+FR++SAV LWRKMLT+LFETGHPW+T+K Sbjct: 489 NEVPDLHHTYGRAFEQKYLDYEQAADEGRIKLFRRVSAVDLWRKMLTLLFETGHPWVTWK 548 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DP NIRSPQ HVGVVH+SNLCTEI LN+S+EETAVCNLGS+NL AH + D L T Sbjct: 549 DPSNIRSPQDHVGVVHNSNLCTEILLNNSAEETAVCNLGSVNLGAHITDGVLDLAMLERT 608 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 IRTAVR+LDNVID+N + +A +N HR IGLGLMGFQ AL+ + I YAS AV+ AD Sbjct: 609 IRTAVRMLDNVIDLNFYPTPEAANANLRHRPIGLGLMGFQDALYAMQISYASDRAVQFAD 668 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSR 743 ESME IS+ A+ AS ELA+ERG Y+SF GS WD+G PID+I L+ + R ++ + RT++ Sbjct: 669 ESMEAISYFALLASSELARERGKYASFAGSKWDRGYLPIDTIDLVEQERGIKIDVPRTAQ 728 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L W+ +++ ++ G+RNSN +AIAPTATI+NI GVSQSI+P+Y+NLYVKSN+SG+FT VN Sbjct: 729 LNWEVVRRAIREQGLRNSNVLAIAPTATISNIAGVSQSIEPTYRNLYVKSNLSGEFTQVN 788 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV ELK LW E M+ LKY+DG + I IP ++K+ + TAFEI+P WLIE A+RR Sbjct: 789 EWLVEELKGLGLWSEEMLDQLKYYDGELAPIAEIPAEVKERYRTAFEIEPRWLIECAARR 848 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GV 919 QKWID QSLNLYL PSG+KLD +Y AW +GLKTTYYLR+ +AT VEKST+ G+ Sbjct: 849 QKWIDMGQSLNLYLAAPSGRKLDEMYFLAWKLGLKTTYYLRTLAATQVEKSTIDVNRFGI 908 Query: 920 DGKL--NAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + N D P C +CE CQ Sbjct: 909 QPRWMKNKSASGDIQIDRTLASAPEVCNLGGDCEACQ 945 >gi|330443802|ref|YP_004376788.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila pecorum E58] gi|328806912|gb|AEB41085.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila pecorum E58] Length = 1047 Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/940 (52%), Positives = 647/940 (68%), Gaps = 20/940 (2%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMA-VEGKGASRSIRVQDIIKNLTEQTVTRLL- 84 +GV +I+R+G F+P KIS A+ KAF A ++ G + S V +I LT + V ++ Sbjct: 116 RGVLIIRRDGTSVKFNPMKISAALEKAFRATLQINGITPSPTVLEI-NELTLKIVEEIMA 174 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ-SHSKSDAPIAP 143 QH A +HIE IQD VE LM +G + + + Y+LYRE R R + S S+ + Sbjct: 175 QHVGKAHGIHIEAIQDIVEKQLMIAGFYDVAKSYILYREARMRARENKVSEVNSECFVED 234 Query: 144 KL-KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETA 201 ++ +++ +D T N LE AC+ + SSK + + N++ G+ ES++ +A Sbjct: 235 EVYRVVREDQTEYLLNKAELEKRFTWACARFPETTSSKTLADMAFANLFSGVKESEVVSA 294 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++R IEKEP+YA V A L E + +E + A ++ + YF +YI Sbjct: 295 CIMAARANIEKEPDYAFVAADLLHEVVYQETVGL------SAVSSKLTDAHRRYFKQYIL 348 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 EG RL + + ++DL LA L RD F Y+G+Q L+DRYF G R+E Q F+ Sbjct: 349 EGENYRL-NPQLKEYDLDALAEVLDLTRDRKFSYMGVQNLFDRYFNQHEGKRLETAQIFW 407 Query: 322 MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 MRV+MGLAL E EK A+ FY+LLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 408 MRVSMGLALNEGKEKTSWAITFYHLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDL 467 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I+ + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTAVAVNQ Sbjct: 468 QHIYKVISDNALLSKWAGGIGNDWTDVRARGAKIKGTNGKSQGVIPFIKVANDTAVAVNQ 527 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKRKGA C YLE+WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WT Sbjct: 528 GGKRKGAACVYLESWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLKQKGIWT 587 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSPD+V LH+ YG EFE YE YE++ + GEI+++RK+ A LWRKML+ML+ETGHPW Sbjct: 588 LFSPDDVPGLHEAYGLEFEKLYEEYEQKIETGEIQLYRKVEAEVLWRKMLSMLYETGHPW 647 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 +TFKDP NIR+ Q HVGVV SNLCTEI LNSS ETAVCNLGS+NL+ H N + + K Sbjct: 648 LTFKDPSNIRAAQDHVGVVRCSNLCTEILLNSSESETAVCNLGSLNLVEHLENGEINEAK 707 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 LA TIR AVR+LDNVID+N + I +A ++N THRA+GLG MGFQ AL+ +I YAS EAV Sbjct: 708 LAETIRIAVRILDNVIDLNFYPIPEAAQANLTHRAVGLGCMGFQDALYEKNISYASQEAV 767 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAM 738 E ADE E I++HAI +S ELA+ERG Y+S+KGS WD+G+ PID+I LL + R E + M Sbjct: 768 EFADEVAEIIAYHAILSSTELAKERGVYASYKGSKWDRGLLPIDTIDLLKQARGEQYVLM 827 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + R W+ +++ V+ GMRNS+ M IAPTATI+NI G++QSI+P+Y+NL+VKSN+SG+ Sbjct: 828 DTSCRKDWEPVREAVRKYGMRNSHLMTIAPTATISNIIGITQSIEPTYKNLFVKSNLSGE 887 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FT+ N +L+ +LK LWDE M+ DLKY DGS+ IERIP++LKK+ TAFEI+P WLIE Sbjct: 888 FTIPNVYLIRKLKSLGLWDEDMLDDLKYFDGSLSEIERIPENLKKVFVTAFEIEPEWLIE 947 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS---- 914 ASRRQKWID QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS Sbjct: 948 CASRRQKWIDMGQSLNLYLAEPNGKKLSTMYLTAWEKGLKTTYYLRSLAATSVEKSFTDI 1007 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +G+ + + + C+ + CE CQ Sbjct: 1008 NKRGIQPRWMKNMSASTSIIVERTAKNAVCSMEEGCESCQ 1047 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 11/147 (7%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82 K K ++KRNG F+ +I +A+ AF + A ++ I ++T + V Sbjct: 5 KEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEEDAPLPKDLEKSISDITSKVVGE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 +++ +V +E IQD VE L +G + R+Y++YR++ + R ++P Sbjct: 65 VIEKISQGQVVTVERIQDIVESQLYVNGLQDVARDYIVYRDQHKEQR--------ESPWR 116 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169 L I+ DGT + FN ++ +E+A Sbjct: 117 GVL-IIRRDGTSVKFNPMKISAALEKA 142 >gi|329943119|ref|ZP_08291893.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila psittaci Cal10] gi|332287702|ref|YP_004422603.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila psittaci 6BC] gi|313848276|emb|CBY17277.1| putative ribonucleotide reductase large subunit [Chlamydophila psittaci RD1] gi|325507258|gb|ADZ18896.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila psittaci 6BC] gi|328814666|gb|EGF84656.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila psittaci Cal10] gi|328914954|gb|AEB55787.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila psittaci 6BC] Length = 1045 Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/939 (51%), Positives = 641/939 (68%), Gaps = 24/939 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI---IKNLTEQTVTRLLQ 85 V VI+R+G F+P KIS A+ KAF A + + +Q+I I LT + V +L Sbjct: 118 VSVIRRDGSTVKFNPMKISAALEKAFRATQ---KITDVSIQEILSEINGLTNKIVEEILG 174 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPK 144 + IE IQD VE LM GH+ + + Y+LYRE RS +R Q P+ Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDPVEEV 234 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETALI 203 ++ DGT S N +L AC + + VL++ + N Y G+ ES++ A I Sbjct: 235 YDVVKSDGTTYSINKSQLIDKFIWACQRFPETTDPHVLADMAFANFYSGIKESEIALACI 294 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++R IEKEP+YA V A L++ + +E + + AT ++ + F YI G Sbjct: 295 MAARANIEKEPDYAYVAAELLMDVVYQETMG------KTATDSDLAEAQKQCFKNYILNG 348 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 RL + + ++DL LA L RD F Y+G+Q LYDRYF G R+E Q F+MR Sbjct: 349 ETYRL-NPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMR 407 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 V+MGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 408 VSMGLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAH 467 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT VR G+ I GTNGKSQGVIPF+KVANDTA+AVNQGG Sbjct: 468 IYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGA YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WTLF Sbjct: 528 KRKGATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLF 587 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LH+ YG EF+ YE YE + D GEIK+++KI A LWRKML+ML+ETGHPW+T Sbjct: 588 SPDDVPGLHEAYGIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMT 647 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIR+ Q HVGVV SNLCTEI LN S ETAVCNLGS+NL+ H N + KL Sbjct: 648 FKDPSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLG 707 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVID+N + ++A +N +HRA+GLG+MGFQ AL+ L+I YASPEAVE Sbjct: 708 ETISIAIRILDNVIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEF 767 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD+S E ++++AI +S LA+ERG YSS+KGS WD+G P+D+I LL E R E + M+ Sbjct: 768 ADKSSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDT 827 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W+ +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 828 SCRKDWNPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 887 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+N+LK+ +WD+ M+ DLKY DGS+ IERIPDDLKKI TAFEI+P WLIE A Sbjct: 888 IPNVYLINKLKELGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECA 947 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKW+D QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS + Sbjct: 948 SRRQKWVDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINK 1007 Query: 921 GKLNAVPVTDPNSSTHSLGIPSS-----CTSDTECEVCQ 954 + + + ++ST S+ + + C+ + CE CQ Sbjct: 1008 RGIQPRWMKNKSAST-SIVVDRAKKTPVCSFEEGCESCQ 1045 Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 19/183 (10%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82 K K ++KRNG F+ +I +A+ AF + +++ I ++T + V Sbjct: 5 KEKHYTIVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 +Q + +V +E IQD VE L +G + R+Y++YR++ + R H S Sbjct: 65 AVQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDQHKEQREGSWHCVS----- 119 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG+ + FN ++ +E+A Q DVS + +LSE +GL+ +E Sbjct: 120 ----VIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-----NGLTNKIVE 170 Query: 200 TAL 202 L Sbjct: 171 EIL 173 >gi|29840534|ref|NP_829640.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila caviae GPIC] gi|29834883|gb|AAP05518.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila caviae GPIC] Length = 1044 Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/934 (51%), Positives = 626/934 (67%), Gaps = 15/934 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 V V +R+G F+P KIS A+ KAF A + + I +LT + V +L Sbjct: 118 VLVRRRDGNAVKFNPMKISAALEKAFRATQKNTDTPFQETLAEINDLTNKIVEEILVVCS 177 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 V IE IQD VE LM GH+ + + Y+LYRE RS +R ++ + + I ++ Sbjct: 178 QEKTVDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRESKENVATQESIEEVYDVV 237 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL-SETYKNMYDGLSESDLETALIFSSR 207 +DG+ N +L AC + ++ L S + N Y G+ E+++ A I ++R Sbjct: 238 REDGSTYQINKAQLTDKFIWACQRFPETTNPQTLASMAFANFYSGIKEAEIVKACIMAAR 297 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 IEKEP+YA V A L + + +E + + AT ++ + F YI G + R Sbjct: 298 ANIEKEPDYAYVAAELLTDVVYQETMG------KSATDSDLAEAQKQCFKNYILNGEEYR 351 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 L + + ++DL LA L RD F Y+G+Q LYDRYF G R+E Q F+MR++MG Sbjct: 352 L-NPRLKEYDLDALAEALDISRDRQFSYMGVQNLYDRYFNQHEGRRLETAQIFWMRISMG 410 Query: 328 LALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LAL E E K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL I+ Sbjct: 411 LALNEGEDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKV 470 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + +NAML+K++GG+GNDWT VR +G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG Sbjct: 471 ISDNAMLSKWAGGIGNDWTGVRAIGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 530 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WTLFSPD+ Sbjct: 531 AMCVYLEIWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLDQKGTWTLFSPDD 590 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V LH+ YG EF+ YE YER+ D GEIK+++KI A LWRKML+ML+ETGHPW+TFKDP Sbjct: 591 VPGLHEAYGFEFDKLYEEYERKIDNGEIKLYKKIPAEDLWRKMLSMLYETGHPWLTFKDP 650 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 NIR Q H GVV SNLCTEI LN S ETAVCNLGS+NL+ H N + KLA TI Sbjct: 651 SNIRGAQDHAGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLAETIS 710 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R+LDN+ID+N + +A +N +HRA+GLG MGFQ AL+ L+I YAS EAVE AD+S Sbjct: 711 IAIRILDNIIDLNFYPTPEAANANLSHRAVGLGQMGFQDALYKLNISYASQEAVEFADKS 770 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744 E I+++AI +S LA+ERG YSS+KGS WD+G P+D++ LL E R E + M+ + R Sbjct: 771 AELIAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTVELLKEYRGEENVLMDTSCRK 830 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W +++ +K GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N Sbjct: 831 DWTPVREAIKAYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNV 890 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +LK+ +WD M+ DLKY DGS+ IERIPDDLKKI TAFEI+P WLIE ASRRQ Sbjct: 891 YLIEQLKKLGIWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQ 950 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS----TLKGVD 920 KWID QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS +G+ Sbjct: 951 KWIDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFTDVNKRGIQ 1010 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + C+ + CE CQ Sbjct: 1011 PRWMKNKSASTSIVVERTKSTPVCSLEEGCESCQ 1044 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 11/152 (7%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82 K K ++KRNG F+ +IS+A+ AF + + +++ I ++T + V Sbjct: 5 KEKNYTIVKRNGMFVPFNQDRISQALEAAFRDTRSLENNSPLPEDLENSISDITHRVVNE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 ++Q + +V +E IQD VE L +G + R+Y++YR++ + R H Sbjct: 65 VMQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIVYRDQHKEQREGSWHC------- 117 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174 + + DG + FN ++ +E+A Q Sbjct: 118 --VLVRRRDGNAVKFNPMKISAALEKAFRATQ 147 >gi|298243908|ref|ZP_06967715.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297556962|gb|EFH90826.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 846 Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/819 (56%), Positives = 590/819 (72%), Gaps = 24/819 (2%) Query: 158 NSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY 216 +S+ + I+EE C G +V+ + Y G+S+++L ALI ++RT IE EP Y Sbjct: 30 DSQAVLRILEEVCQGFGPEVNVDQLFQSVNATTYAGISDAELWQALIMATRTNIEFEPAY 89 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 V AR LL L E L+T + + ++ +Y Y Y+E GV L ++ Sbjct: 90 TFVAARLLLISLYNEALSTT--QATRVGLNDAASIYKNYLSDYVEFGVSKGYLDPRFQEY 147 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 DL+ LA+ + ERD F Y GLQILYDRYFL N R E+PQ +MRVAMGLA E KE Sbjct: 148 DLIELASAIHPERDQLFAYQGLQILYDRYFLQDNNRRFELPQLLWMRVAMGLAFNEEHKE 207 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 RA+EFY LLS F+F +TPTLFN+GT HPQLSSC+LTTV DDL+ IF +Q+NA+L+K+ Sbjct: 208 ARAIEFYELLSQFYFTSATPTLFNAGTTHPQLSSCYLTTVDDDLFHIFKCIQDNALLSKW 267 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 +GGLGNDWT VR LGAHI GTNG SQG+IPFLKV NDTAVAVNQGGKRKGAVCAY+E WH Sbjct: 268 AGGLGNDWTRVRALGAHIKGTNGISQGIIPFLKVVNDTAVAVNQGGKRKGAVCAYIENWH 327 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+EEFLDLRKNTGDDRRRTHDM+TA WI DLFMKRV +N WTLFSPD VSDLHDLYGK Sbjct: 328 LDIEEFLDLRKNTGDDRRRTHDMHTACWISDLFMKRVERNEQWTLFSPDVVSDLHDLYGK 387 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 FE YE YER + G+I +R++SA+ LWRKMLT LFETGHPWITFKDP N+RSPQ H Sbjct: 388 AFEQRYEEYERMVEAGQITHYRRVSALDLWRKMLTRLFETGHPWITFKDPSNVRSPQDHA 447 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 GVVHSSNLCTEI LN+S++ETAVCNLGSINL AH + + ++++L T+RTAVR+LDNVI Sbjct: 448 GVVHSSNLCTEILLNTSNDETAVCNLGSINLAAHIIDGKLNHERLQKTVRTAVRMLDNVI 507 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + ++A+ +N HR +GLGLM FQ AL+ L + YAS A+E AD SME IS++AI Sbjct: 508 DINYYPTDEARNANLRHRPVGLGLMAFQDALYKLGVSYASEAAIEFADRSMEAISYYAIL 567 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKT 755 AS ELA E G Y S++GS WD+G+ PIDSI +L E R + + M+R+ L WD+++ VK Sbjct: 568 ASSELATEHGTYGSYQGSKWDRGILPIDSIAILEEERGQKIDMDRSMTLDWDKVRTAVKQ 627 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 GMRNSN MAIAPTATI++I GVSQSI+PSY+NLYVKSN+SG+FT++NSFLV++LK+ ++ Sbjct: 628 NGMRNSNVMAIAPTATISSIVGVSQSIEPSYKNLYVKSNLSGEFTIINSFLVDDLKRLEI 687 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 WD + LKY+DGS+ + +P+++++ + TAF+I+P WLI ASRRQKWID QS++L Sbjct: 688 WDRNTLEALKYYDGSLQEMTFLPEEIRQRYLTAFDIEPRWLIACASRRQKWIDMGQSIDL 747 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GVDGKL--NAVPVT 929 YL PSGKKL +Y+ AW GLKTTYYLR+ +AT VEKST+ G+ + N+ P + Sbjct: 748 YLYNPSGKKLSDVYQLAWNSGLKTTYYLRTLAATQVEKSTVDINRFGIQPRWMKNSSPSS 807 Query: 930 D-----------PNSSTHSL---GIPSSCTSDTECEVCQ 954 + P + L G + C +CE CQ Sbjct: 808 NIQVERENQAQQPKPTPIPLELSGEGAVCNLGDDCEACQ 846 >gi|62185357|ref|YP_220142.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila abortus S26/3] gi|62148424|emb|CAH64192.1| putative ribonucleotide reductase large subunit [Chlamydophila abortus S26/3] Length = 1045 Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/938 (51%), Positives = 636/938 (67%), Gaps = 22/938 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI---IKNLTEQTVTRLLQ 85 V VI+R+G F+P KIS A+ KAF A + + +Q+I I LT + V +L Sbjct: 118 VSVIRRDGSTVKFNPMKISAALEKAFRATQ---KITDVSIQEILSEINGLTNKIVEEILG 174 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 + IE IQD VE LM GH+ + + Y+LYRE RS +R + + + ++ Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDLVEEV 234 Query: 146 -KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETALI 203 ++ DGT S N +L AC + + VL++ + N Y G+ ES++ A I Sbjct: 235 YDVVKSDGTTYSINKSQLIDKFIWACQRFPETTDPQVLADMAFANFYSGIKESEIALACI 294 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++R IEKEP+YA V A L++ + +E + + AT ++ + F YI G Sbjct: 295 MAARANIEKEPDYAYVAAELLMDVVYQEAMG------KTATDSDLAEAQKQCFKNYILNG 348 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 RL + + ++DL LA L RD F Y+G+Q LYDRYF G R+E Q F+MR Sbjct: 349 ETYRL-NPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMR 407 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 V+MGLAL E +K A+ FYNLLS+F + +TPTLFNSGTRH QLSSC+L+T+ DDL Sbjct: 408 VSMGLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGTRHSQLSSCYLSTIQDDLAH 467 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT VR G+ I GTNGKSQGVIPF+KVANDTA+AVNQGG Sbjct: 468 IYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGA YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WTLF Sbjct: 528 KRKGATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLF 587 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LH+ YG EF+ YE YE + D GEIK+++KI A LWRKML+ML+ETGHPW+T Sbjct: 588 SPDDVPGLHEAYGTEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMT 647 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIR+ Q HVGVV SNLCTEI LN S ETAVCNLGS+NL+ H N + KL Sbjct: 648 FKDPSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLE 707 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVID+N + ++A +N +HRAIGLG+MGFQ AL+ L+I YASPEAVE Sbjct: 708 ETISIAIRILDNVIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEF 767 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD+S E ++++AI +S LA+ERG YSS+KGS WD+G P+D+I LL E R E + M+ Sbjct: 768 ADKSSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDT 827 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 828 SCRKDWTPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 887 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+++LK+ LWD+ M+ DLKY DGS+ IERIPDDLKKI TAFEI+P WLIE A Sbjct: 888 IPNVYLISKLKELGLWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECA 947 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS----TL 916 SRRQKWID QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS Sbjct: 948 SRRQKWIDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINK 1007 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +G+ + + C+ + CE CQ Sbjct: 1008 RGIQPRWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 19/183 (10%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82 K K V+KRNG F+ +I +A+ AF + +++ I ++T + V Sbjct: 5 KEKHYTVVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 ++Q + +V +E IQD VE L +G + R+Y++YR+ + R H S Sbjct: 65 VIQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDHHKEQREGSWHCVS----- 119 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG+ + FN ++ +E+A Q DVS + +LSE +GL+ +E Sbjct: 120 ----VIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-----NGLTNKIVE 170 Query: 200 TAL 202 L Sbjct: 171 EIL 173 >gi|269839639|ref|YP_003324331.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermobaculum terrenum ATCC BAA-798] gi|269791369|gb|ACZ43509.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermobaculum terrenum ATCC BAA-798] Length = 819 Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/816 (55%), Positives = 587/816 (71%), Gaps = 13/816 (1%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ +G L+ + R+ ++ AC GL + + +E +++YD ++ + +A+I Sbjct: 12 RVRVVSPEGGLVPLDPDRVRRHLQHACRGLPECDPDELANEVVRSLYDRVTPEQIRSAMI 71 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++R IE++P Y KV +R +LE++ +E V P +A E+ Y E F RY+ Sbjct: 72 LAARARIERDPAYDKVASRLMLEQIYQESWGWV---PSEA---ELAATYREMFPRYVHAC 125 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + A L E + FDL LA+ L+ ERD Y+GLQ LYDRY L + G R+E PQ F+MR Sbjct: 126 ISAGRLSEELARFDLARLASALRPERDEKLRYIGLQTLYDRYLLDVEGRRLEAPQYFWMR 185 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VAMGLAL+E + RA +FY+LLSS F+ +TPTLFNSGT HPQLSSC+L+TV DDL I Sbjct: 186 VAMGLALREDDPNARAAQFYDLLSSLRFVSATPTLFNSGTPHPQLSSCYLSTVEDDLEHI 245 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 F + +NA L+K++GGLGNDWT VR GA I GT+GKSQGVIPFLK+ NDTAVAVNQGGK Sbjct: 246 FKVIGDNAKLSKWAGGLGNDWTRVRATGALIRGTHGKSQGVIPFLKIVNDTAVAVNQGGK 305 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGAVC YLE WH+D EEFL+LRKNTGD+RRRTHDM+TA+W+PDLFM+RV + WTLFS Sbjct: 306 RKGAVCCYLEPWHLDFEEFLELRKNTGDERRRTHDMHTASWVPDLFMRRVQEGGTWTLFS 365 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+EV DLH+LYG+ FE Y YER A+ G+++ +++ A LWRKML+ML+ETGHPWI F Sbjct: 366 PNEVPDLHELYGRAFERRYVEYERMAEEGKLRQHKRVDAKMLWRKMLSMLWETGHPWIAF 425 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623 KDP NIRS Q HVGV+HSSNLCTEI L +S EETAVCNLGSINL+ H + + D KLA Sbjct: 426 KDPSNIRSAQDHVGVIHSSNLCTEILLPTSREETAVCNLGSINLVEHLSGDGLDEAKLAE 485 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTAVR+LDNVIDIN + +A++SN HR IGLG+MGF AL L IPYASP+AVE + Sbjct: 486 TVRTAVRMLDNVIDINFYPTPEARRSNLRHRPIGLGIMGFHDALLALRIPYASPQAVEFS 545 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTS 742 D++ME IS+HAI AS ELA ERG Y S++GS W +G+ PID+I LL R +L M+RT+ Sbjct: 546 DQTMELISWHAIMASSELAAERGRYPSYQGSKWSRGLLPIDTIELLERERGGDLEMDRTA 605 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 RL W +++ V G+RNS MAIAPTATI+NI GVSQSI+P Y+NL+VKSN+SGDFT+V Sbjct: 606 RLDWGPVREAVARWGVRNSQIMAIAPTATISNIAGVSQSIEPHYRNLFVKSNLSGDFTIV 665 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+ LW + M+ +KY+DGSI IE IPD++K ++ TA EIDP+WLIE ASR Sbjct: 666 NPYLVEDLKRLGLWSQEMLDRIKYYDGSILPIEEIPDEVKHLYLTAHEIDPLWLIECASR 725 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----G 918 RQKW+D QSLN+Y+ EPSGKKL IY AW GLKTTYYLR+ AT+VEK+++ G Sbjct: 726 RQKWVDMGQSLNIYVAEPSGKKLHEIYFAAWRKGLKTTYYLRAVGATNVEKASMDINRFG 785 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + G S+C +CE CQ Sbjct: 786 VQPRWMRSRSASSRVRIVREG--STCQLGEDCEACQ 819 >gi|15618892|ref|NP_225178.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae CWL029] gi|15836515|ref|NP_301039.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae J138] gi|16752044|ref|NP_445410.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae AR39] gi|33242352|ref|NP_877293.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae TW-183] gi|7388068|sp|Q9Z6S5|RIR1_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|4377312|gb|AAD19121.1| Ribonucleoside Reductase, Large Chain [Chlamydophila pneumoniae CWL029] gi|7189784|gb|AAF38661.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila pneumoniae AR39] gi|8979357|dbj|BAA99191.1| ribonucleoside reductase, large chain [Chlamydophila pneumoniae J138] gi|33236863|gb|AAP98950.1| ribonucleoside reductase large chain [Chlamydophila pneumoniae TW-183] Length = 1044 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/937 (50%), Positives = 638/937 (68%), Gaps = 21/937 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMA-VEGKGASRSIRVQDIIKNLTEQTVTRLLQ-H 86 + +I+R+GG F+P KIS A+ KAF A ++ G + + +I +LT + V +L H Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEI-NDLTLRIVEDVLSLH 176 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPK 144 + A +++E+IQD VE LM +G++ + + Y+LYRE R+ RA + + P Sbjct: 177 GEEA--INLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEET 234 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 + +DGT LE AC + S+++ + N+Y G+ E ++ TA I Sbjct: 235 YVVQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEDEVTTACI 294 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++R IE+EP+YA + A L L E L + P + H+ ++F YI G Sbjct: 295 MAARANIEREPDYAFIAAELLTSSLYEETLGCSSQDPNLSEIHK------KHFKEYILNG 348 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + RL + + D+DL L+ L RD F Y+G+Q LYDRYF G R+E Q F+MR Sbjct: 349 EEYRL-NPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMR 407 Query: 324 VAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 V+MGLAL E E++ A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 408 VSMGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSH 467 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTA+AVNQGG Sbjct: 468 IYKVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ + WTLF Sbjct: 528 KRKGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLF 587 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LH+ YG EFE YE YER+ + GEI++++K+ A LWRKML+ML+ETGHPWIT Sbjct: 588 SPDDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWIT 647 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q HVGVV SNLCTEI LN S ETAVCNLGSINL+ H N++ D +KL Sbjct: 648 FKDPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDKLDEEKLK 707 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVID+N + +AK++N THRA+GLG+MGFQ L+ L+I YAS EAVE Sbjct: 708 ETISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEF 767 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 +DE E I+++AI AS LA+ERG Y+S+ GS WD+G P+D+I LL E R E + ++ Sbjct: 768 SDECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDT 827 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +S+ W ++ ++ GMRNS MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT Sbjct: 828 SSKKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFT 887 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N++L+ +LK+ LWD M+ DLKY DGS+ IERIP+ LKK+ TAFEI+P W+IE Sbjct: 888 IPNTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECT 947 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWID SLNLYL EP GKKL +Y AW GLKTTYYLRS++ATSVEKS + Sbjct: 948 SRRQKWIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKSFIDINK 1007 Query: 921 GKLNAVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954 + + + ++ST + C+ + CE CQ Sbjct: 1008 RGIQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG F+ +I +A+ AF S + +++ I +T + V +L Sbjct: 7 KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +V +E IQD VE L SG + R+Y++YR++R +A + +S S Sbjct: 67 AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQR---KAERGNSSS------I 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 + I+ DG FN ++ +E+A Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKA 142 >gi|269302785|gb|ACZ32885.1| ribonucleoside-diphosphate reductase alpha subunit [Chlamydophila pneumoniae LPCoLN] Length = 1044 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/937 (50%), Positives = 637/937 (67%), Gaps = 21/937 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMA-VEGKGASRSIRVQDIIKNLTEQTVTRLLQ-H 86 + +I+R+GG F+P KIS A+ KAF A ++ G + + +I +LT + V +L H Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEI-NDLTLRIVEDVLSLH 176 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPK 144 + A +++E+IQD VE LM +G++ + + Y+LYRE R+ RA + + P Sbjct: 177 GEGA--INLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEET 234 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 + +DGT LE AC + S+++ + N+Y G+ E ++ TA I Sbjct: 235 YVVQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACI 294 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++R IE+EP+YA + A L L E L + P + H+ ++F YI G Sbjct: 295 MAARANIEREPDYAFIAAELLTSSLYEETLGCNSQDPNLSEIHK------KHFKEYILNG 348 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + RL + + D+DL L+ L RD F Y+G+Q LYDRYF G R+E Q F+MR Sbjct: 349 EEYRL-NPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMR 407 Query: 324 VAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 V+MGLAL E E++ A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 408 VSMGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSH 467 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTA+AVNQGG Sbjct: 468 IYKVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ + WTLF Sbjct: 528 KRKGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLF 587 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LH+ YG EFE YE YER+ + GEI++++K+ A LWRKML+ML+ETGHPWIT Sbjct: 588 SPDDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWIT 647 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q HVGVV SNLCTEI LN S ETAVCNLGSINL+ H N + D +KL Sbjct: 648 FKDPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLK 707 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI A+R+LDNVID+N + +AK++N THRA+GLG+MGFQ L+ L+I YAS EAVE Sbjct: 708 ETISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEF 767 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 +DE E I+++AI AS LA+ERG Y+S+ GS WD+G P+D+I LL E R E + ++ Sbjct: 768 SDECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDT 827 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +S+ W ++ ++ GMRNS MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT Sbjct: 828 SSKKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFT 887 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N++L+ +LK+ LWD M+ DLKY DGS+ IERIP+ LKK+ TAFEI+P W+IE Sbjct: 888 IPNTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECT 947 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SRRQKWID SLNLYL EP GKKL +Y AW GLKTTYYLRS++ATSVEKS + Sbjct: 948 SRRQKWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINK 1007 Query: 921 GKLNAVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954 + + + ++ST + C+ + CE CQ Sbjct: 1008 RGIQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84 K ++KRNG F+ +I +A+ AF S + +++ I +T + V +L Sbjct: 7 KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +V +E IQD VE L SG + R+Y++YR++R +A + +S S Sbjct: 67 AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQR---KAERGNSSS------I 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169 + I+ DG FN ++ +E+A Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKA 142 >gi|159899094|ref|YP_001545341.1| ribonucleoside-diphosphate reductase subunit alpha [Herpetosiphon aurantiacus ATCC 23779] gi|159892133|gb|ABX05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 806 Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/793 (55%), Positives = 558/793 (70%), Gaps = 7/793 (0%) Query: 163 EMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222 ++IVE + Q + + Y ++ ++ A ++R+ IE+EP+Y+ V A Sbjct: 20 QLIVEACAAYPQTTDANTLWQAASLGFYPNMAVAEQLQACCLTARSWIEQEPDYSFVAAA 79 Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282 L +L EVL P Y F YI+ G+ LL + FDL LA Sbjct: 80 LLASQLHFEVLGEYLATPAVVPR------YASAFVDYIQAGIAQGLLDPKLASFDLARLA 133 Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 + ERD Y GLQ LYDRYF+ G R E+PQ F+MRVAMGLAL E ++E + + F Sbjct: 134 AAIVPERDALLAYPGLQTLYDRYFIQWQGLRRELPQIFWMRVAMGLALNEADREAQTLRF 193 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y +LS FHF +TPTLFN+ T HPQLSSC+L+TV DDL IFGA+ +NAML+K++GGLGN Sbjct: 194 YEVLSQFHFTSATPTLFNAATTHPQLSSCYLSTVGDDLEAIFGAISDNAMLSKWAGGLGN 253 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 DWTPVR LGA IHGTNG SQGVIPFLK+ NDTA+AVNQGGKRKGAVCAYLE WH D+E+F Sbjct: 254 DWTPVRALGAPIHGTNGVSQGVIPFLKIVNDTAIAVNQGGKRKGAVCAYLEAWHADLEDF 313 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDLRK TGD+RRRTHDM+TA W+PDL M+RV N W+LFSPDEV DLHDLYG++F + Y Sbjct: 314 LDLRKPTGDERRRTHDMHTALWVPDLLMERVLSNGSWSLFSPDEVPDLHDLYGQDFAVRY 373 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE A +G ++ R++ AVALWRK+LT LFETGHPWIT+KD N+RSPQ HVGV+HSS Sbjct: 374 AEYEALAAQGLMRSARQVEAVALWRKVLTRLFETGHPWITWKDAANVRSPQDHVGVIHSS 433 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLCTEI LN+S++E AVCNLGSINL AH + D +KL +T+ TAVR+LDNVIDIN + Sbjct: 434 NLCTEILLNTSADEIAVCNLGSINLAAHIRDGSLDLEKLRTTVTTAVRMLDNVIDINFYP 493 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +A ++N HR IGLGLMGFQ AL+ L I YAS AVE +D SME I++ A++AS+ELA Sbjct: 494 RPQAAQANARHRPIGLGLMGFQDALYALKIGYASQAAVEFSDRSMEAIAYFAVAASIELA 553 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761 +ERGAY SF+GS WD+G+ PIDS+ +LAE RD + ++ +S W L++ + G+RNS Sbjct: 554 RERGAYPSFRGSKWDRGMLPIDSLAILAEQRDSKPELDHSSHYDWQPLREALAQYGIRNS 613 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 N +AIAPTATIANI G SQSI+P+Y++LYVKSN+SGDFT VN LV+ LK R LWD ++ Sbjct: 614 NLLAIAPTATIANIVGTSQSIEPTYRHLYVKSNLSGDFTTVNRALVDALKARGLWDVDLL 673 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 ++LKY+DG+I IERIP +LK TAFEI P WLI A+RRQKWID QSLNLY+ E S Sbjct: 674 AELKYYDGAISQIERIPAELKTQFLTAFEIAPEWLIACAARRQKWIDMGQSLNLYVAETS 733 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 GK+L+ IY AW MGLKTTYYLR+ +AT +EKSTL + + + + S L Sbjct: 734 GKRLNEIYLTAWRMGLKTTYYLRTLAATQIEKSTLDINRFGVQPRWMRNRSESASVLSDN 793 Query: 942 SSCTSDTECEVCQ 954 D CE C+ Sbjct: 794 VCPIDDPSCEACE 806 >gi|289677033|ref|ZP_06497923.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. syringae FF5] Length = 762 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/734 (58%), Positives = 543/734 (73%), Gaps = 6/734 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTAGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H + + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E R E ++++ L Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749 Query: 746 WDELKKRVKTIGMR 759 W ++ RV+ G+R Sbjct: 750 WAPVRARVQK-GIR 762 >gi|269302770|gb|ACZ32870.1| ribonucleoside-diphosphate reductase, alpha subunit, truncated [Chlamydophila pneumoniae LPCoLN] Length = 815 Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/815 (53%), Positives = 569/815 (69%), Gaps = 14/815 (1%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + +DGT LE AC + S+++ + N+Y G+ E ++ TA I + Sbjct: 8 VQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMA 67 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +R IE+EP+YA + A L L E L + P + H+ ++F YI G + Sbjct: 68 ARANIEREPDYAFIAAELLTSSLYEETLGCNSQDPNLSEIHK------KHFKEYILNGEE 121 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 RL + + D+DL L+ L RD F Y+G+Q LYDRYF G R+E Q F+MRV+ Sbjct: 122 YRL-NPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVS 180 Query: 326 MGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 MGLAL E E++ A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL I+ Sbjct: 181 MGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIY 240 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKR Sbjct: 241 KVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKR 300 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ + WTLFSP Sbjct: 301 KGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSP 360 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 D+V LH+ YG EFE YE YER+ + GEI++++K+ A LWRKML+ML+ETGHPWITFK Sbjct: 361 DDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFK 420 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DP NIRS Q HVGVV SNLCTEI LN S ETAVCNLGSINL+ H N + D +KL T Sbjct: 421 DPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKET 480 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I A+R+LDNVID+N + +AK++N THRA+GLG+MGFQ L+ L+I YAS EAVE +D Sbjct: 481 ISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSD 540 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTS 742 E E I+++AI AS LA+ERG Y+S+ GS WD+G P+D+I LL E R E + ++ +S Sbjct: 541 ECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSS 600 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W ++ ++ GMRNS MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ Sbjct: 601 KKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIP 660 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N++L+ +LK+ LWD M+ DLKY DGS+ IERIP+ LKK+ TAFEI+P W+IE SR Sbjct: 661 NTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSR 720 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWID SLNLYL EP GKKL +Y AW GLKTTYYLRS++ATSVEKS + Sbjct: 721 RQKWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRG 780 Query: 923 LNAVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954 + + + ++ST + C+ + CE CQ Sbjct: 781 IQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 815 >gi|330889422|gb|EGH22083.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. mori str. 301020] Length = 706 Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/675 (59%), Positives = 506/675 (74%), Gaps = 3/675 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509 Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK F+ YE YE + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPC Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SM Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689 Query: 688 EFISFHAISASVELA 702 E +S++AI AS +LA Sbjct: 690 EAVSYYAIQASCDLA 704 >gi|294055009|ref|YP_003548667.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita akajimensis DSM 45221] gi|293614342|gb|ADE54497.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita akajimensis DSM 45221] Length = 1080 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/944 (46%), Positives = 609/944 (64%), Gaps = 35/944 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++I+RNG V + SKI A+ K+F+++ D+ + +T++ +N Sbjct: 154 IRLIRRNGQVVPWSESKIEIAVRKSFLSLHLDSGP----AMDVARAVTDRL------NNS 203 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 ++IED+QD V+ LM+ GH K+ Y+LYR R+ +R ++ D + ++ Sbjct: 204 GQAFINIEDVQDTVQEELMRQGHFKVAESYILYRAHRTRLRDESGETEVDETQQESMIVV 263 Query: 149 MDDGTLISF-NSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ +F + L+ +E A GL+ +S+ + +E +++Y + DL+ +I ++ Sbjct: 264 TEENGENTFWDGVDLKRRIEFATIGLELTLSNDEIETELRRSLYPEMKREDLQKTIILNA 323 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 + LIE++ ++A+ R LL + EVL + +++ + Y++ V+ Sbjct: 324 KALIERDADFARFAGRVLLSYIYEEVLDWDIVRDGV---EQLKEAHRRGLKTYLKRAVEI 380 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS----RIEMPQAFFM 322 +H ++++DL L+ L D F+YLG+Q LYDRY + + R+E+PQ F++ Sbjct: 381 ERVHPKLLEYDLKRLSEALDPSADLDFDYLGVQTLYDRYLIVDKTAKKHRRLEVPQFFWI 440 Query: 323 RVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 RVAMGL E E +E + YNL S F STPTLFNSGT H QLSSC+L V D + Sbjct: 441 RVAMGLFHAEKEDREGYVISLYNLYKSRRFCSSTPTLFNSGTLHSQLSSCYLYKVDDSIE 500 Query: 382 GIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + +NA L+K++GGLG WT VRG G I GTNG+SQGVIPFLK+ ND VAVNQ Sbjct: 501 SIMHRGIADNAFLSKWAGGLGGSWTAVRGTGGFIKGTNGESQGVIPFLKLHNDQLVAVNQ 560 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRRTHDMNTANWIPDLFMKR+ WT Sbjct: 561 GGKRRGSGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDWT 620 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF +E DLHDLYGK FE Y YE A+RGE+ +K+ A+ LW+ ML M+FETGHPW Sbjct: 621 LFRSNETPDLHDLYGKAFEDRYCEYEAMAERGEL-FGKKVPAIELWKSMLRMIFETGHPW 679 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYD 619 ITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S EETAVCNLGS+ L +H + D++ Sbjct: 680 ITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSDEETAVCNLGSVVLDSHLDKDGNLDHE 739 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL T+ AVR LDNVIDIN + E AK +N HR IGLG+MG Q+AL + I +AS A Sbjct: 740 KLRETVSIAVRALDNVIDINFYPTEAAKTANSRHRPIGLGVMGLQNALFVKDIAFASQAA 799 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738 VE DE ME I+++A AS +LA E G YS++KGS WD+G+ P D++ +L R +E+ + Sbjct: 800 VEFNDEFMEAIAYYAYEASSDLAAEHGTYSTYKGSKWDRGLMPQDTLDMLQSERGEEVVV 859 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 R ++ W+ L+ ++ GMRNSN +AIAPTATI+NI G S I+P+Y+NL+VKSN+SGD Sbjct: 860 PRAGKMDWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSGD 919 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F V+N LV +LK R LWD+ M+ LKY DG + I+ IP DL++ + TAF I+ + I+ Sbjct: 920 FIVLNGHLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFID 979 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL-- 916 +A+RRQKWIDQ+QS+NL+L EP K L +YR AW GLKTTYYLR+ A+++EK+T+ Sbjct: 980 AAARRQKWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKTTYYLRTLGASNIEKATVSV 1039 Query: 917 -KGVDGKL-NAVPV----TDPNSSTHSLGIPSSCTSDTECEVCQ 954 K V G+ +A P TD SL + + ECE CQ Sbjct: 1040 KKEVRGRAGDATPAKKEYTDAEVKACSL---EAMMNGGECEACQ 1080 >gi|254444373|ref|ZP_05057849.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Verrucomicrobiae bacterium DG1235] gi|198258681|gb|EDY82989.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Verrucomicrobiae bacterium DG1235] Length = 1062 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/917 (47%), Positives = 598/917 (65%), Gaps = 29/917 (3%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 +K V++I+R+ V + KI A+ +AF+++E + + ++ V I VT +Q Sbjct: 151 LKNVRLIRRDRKVVPWKQEKIEIAVRRAFLSLE-QNSDPAVEVAAI--------VTERIQ 201 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS-HSKSDAPIAPK 144 A V IE++QD V+ LM+ GH K+ YVLYRE+R R ++ +D Sbjct: 202 ATGQAF-VEIEEVQDIVQEELMKQGHFKVAAHYVLYREQRRAHREQEALQLATDTEQDSM 260 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALI 203 + + DG+ ++ L+ +E A GL ++ + E ++++D +SE+DLE + Sbjct: 261 VVVKKTDGSTYFWDGIDLKKRIEFASIGLDLCLNHDEIEIELRRSIFDEISEADLEKTIT 320 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++RTLIE++ ++AK AR L + +E L + ++ + + F Y+ G Sbjct: 321 LNARTLIEQDADFAKFAARIKLSYMYQETLGWDIVRDGIGA---IKTFHQKKFKEYVRHG 377 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL----HINGSRIEMPQA 319 + L+ + ++D+ LA L D F+YLG+Q LYDRY + RIE PQ Sbjct: 378 IMIGRLNPKLKEYDINKLAKQLDPSADLEFDYLGIQTLYDRYLIIDKTQKQQRRIETPQF 437 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+MRVAMGL E E+E +A Y L S F STPTLFN+GT H QLSSC+L V D Sbjct: 438 FWMRVAMGLFHAEEERELKAKTLYKLYKSRRFCSSTPTLFNAGTCHSQLSSCYLYYVDDS 497 Query: 380 LYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI + +NA L+K++GGLG WT VRG G++I GTNG+SQG++PFLK+ ND +AV Sbjct: 498 IEGIMQRGIADNAYLSKWAGGLGGSWTSVRGTGSYIKGTNGESQGIVPFLKLHNDLLIAV 557 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRR HDMNTANW+PDLFMKR+ Sbjct: 558 NQGGKRRGSGCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQM 617 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+ F EV DLHD YG +FE Y YE +A +GEI +++ A+ +W++ML+M+FETGH Sbjct: 618 WSFFRTSEVPDLHDSYGADFEKKYTEYEAKAAKGEI-WSKEVPAIEVWKRMLSMIFETGH 676 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFD 617 PWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S EETAVCNLGSI L H + D Sbjct: 677 PWITFKDPCNVRSPQDHCGVVHSSNLCTEITLNTSKEETAVCNLGSIVLDQHLDKDGNID 736 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +DKL T++TA+R LDNVIDIN + E AK +N HR IGLG+MG Q+ L+L P+AS Sbjct: 737 HDKLRETVQTAIRALDNVIDINFYPTEAAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQ 796 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-EL 736 EAVE DE ME ++++AI AS +LA ERG Y S+KGS WD+G+ P D++ LL + R E+ Sbjct: 797 EAVEFNDEIMEAVAYYAIEASSDLAAERGTYKSYKGSKWDRGLLPQDTVDLLEKERGVEV 856 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + R +L W ++++V GMRNSN MAIAPTATI+NI G S I+P Y+NL+VKSN+S Sbjct: 857 DVPRGGKLDWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLS 916 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F ++N LV +LK R LW+ M +LKY DG + I+ IP DLK + TAF +D WL Sbjct: 917 GEFIILNQHLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWL 976 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST- 915 + +A+RRQKWIDQ+QS+NL+L P K L +YR AW GLKTTYYLR+ A+++EK+T Sbjct: 977 VLAAARRQKWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKTTYYLRTLGASNIEKATV 1036 Query: 916 -----LKGVDGKLNAVP 927 L+G+ G A P Sbjct: 1037 GAKKELRGIVGGKAAPP 1053 >gi|284043178|ref|YP_003393518.1| ribonucleoside-diphosphate reductase, subunit alpha [Conexibacter woesei DSM 14684] gi|283947399|gb|ADB50143.1| ribonucleoside-diphosphate reductase, alpha subunit [Conexibacter woesei DSM 14684] Length = 1091 Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/951 (44%), Positives = 592/951 (62%), Gaps = 47/951 (4%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++I+R+G VT+++P+KI AI KAF++++ S + ++E+ H Sbjct: 163 LRLIRRSGHVTAWEPAKIEVAIRKAFLSLQAD----SEPAVALAARVSERA------HAL 212 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA------ 142 V IE +QD V+ L+ +GH + Y++YR ERS +RA DAP+ Sbjct: 213 GMAYVPIETVQDIVQEELVLAGHMRAAERYIVYRAERSLLRA------QDAPVPGAPGSG 266 Query: 143 --PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLE 199 P + ++ DGT + + L + A GL ++ + + E + + G+ +DL Sbjct: 267 AQPPVPVIELDGTESLWGGEDLRARIAFAAIGLDLPLAPEELERELRRAIRPGIKRADLR 326 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 + +++ L+E++ ++++ R LL + E L + ++ + Sbjct: 327 RLTVLNAKALVERDSDFSRFAGRILLSHVYEEALAWDIVRDGVGA---LKAAHERGLRAL 383 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL----HINGSRIE 315 +E GV + ++ D+D+ LA L D F++LGLQ LYDRY + RIE Sbjct: 384 LEHGVAIGRIDPALHDYDVARLAAALDPTADLDFDFLGLQTLYDRYLIVDKKAAEPRRIE 443 Query: 316 MPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 PQ F+MRVAMG+ L + +E+RA++ Y + F STPTLFN+GT H QLSS Sbjct: 444 TPQLFWMRVAMGVCLTARDGDPAAREERAIDLYTMYKQRRFCSSTPTLFNAGTPHSQLSS 503 Query: 371 CFLTTVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 C+L + D L I G + ENAM +K++GGLG WT VRG G+HI TNG+SQGV+PFLK Sbjct: 504 CYLYKIEDTLSSIVGRGIAENAMCSKWAGGLGGSWTAVRGTGSHIESTNGESQGVVPFLK 563 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + ND VAVNQGGKR G+ CAYLE WH D+ EFL+LR+NTGD+RRRTHDMNTANWIPDLF Sbjct: 564 MHNDQLVAVNQGGKRAGSGCAYLEVWHNDIREFLELRRNTGDERRRTHDMNTANWIPDLF 623 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 MKRV WTLF ++V DLH+ YG++FE YE YE + D GE+ R I A+ LW++M Sbjct: 624 MKRVEAREQWTLFRSNDVPDLHETYGRDFEARYEAYEARVDAGELHGER-IPAIELWKQM 682 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 L +LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+ +ETAVCNLGS+ + Sbjct: 683 LKLLFETGHPWITFKDPCNVRSPQDHAGVVHSSNLCTEITLNTGPDETAVCNLGSVVIDQ 742 Query: 610 HF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H A + D+ KL +TIR AVR LD+VID+N + E A+ +N HR +GLG+MG Q AL+ Sbjct: 743 HLDAAGEIDHAKLRATIRVAVRALDDVIDVNFYPTEPARTANGRHRPVGLGVMGLQYALY 802 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + + SPEA+ DE ME I+F+A AS +LA ERG Y S+ GS WD+G+ P D++ L Sbjct: 803 RKGLAFGSPEALAFGDEMMEAIAFYAYEASSDLAAERGTYQSYAGSKWDRGLLPQDTLDL 862 Query: 729 LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L E R + + + R R+ W L+ ++ GMRNSN +AIAPTATIANI G S I+P Y+ Sbjct: 863 LEEERGQPIEVERGGRMDWTPLRAKIAAQGMRNSNVLAIAPTATIANIMGTSPCIEPMYK 922 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NL+ KSN+SGDFT++N FLV +LK +W A+ LK +G + + +P L+ ++ T Sbjct: 923 NLFAKSNLSGDFTILNPFLVRDLKAAGVWSGALAERLKVVEGDLEQVPEVPAALRALYRT 982 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 AF+I+P LI++A+RRQKWIDQ+QSLNL+L P K + +YR+AW GLKTTYYLR+ Sbjct: 983 AFQIEPERLIDAAARRQKWIDQSQSLNLFLAAPDLKAMSHMYRRAWHAGLKTTYYLRTLG 1042 Query: 908 ATSVEK----STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 A+++EK + +P T P++ + I + + ECE CQ Sbjct: 1043 ASAIEKATVAAPAAATVPAAAGMP-TAPDAEALACSI-EAMRNGEECEACQ 1091 >gi|171913277|ref|ZP_02928747.1| ribonucleotide-diphosphate reductase subunit alpha [Verrucomicrobium spinosum DSM 4136] Length = 1109 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/904 (45%), Positives = 585/904 (64%), Gaps = 31/904 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++I+RNG V S++P+KI A+ KAF++VE + + + + LT Q + Q Sbjct: 170 TKIIRRNGQVVSWNPNKIELAVSKAFVSVEMG----TTHAKAVAEALTHQMIEEAKQ--- 222 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAP--- 143 +HIE +QD VE LM+ GH K + Y+LYR R+D R + S +D AP P Sbjct: 223 ---FIHIEQVQDLVEEQLMRQGHFKAAKAYMLYRALRADSRERDAKSAADISAPELPVDD 279 Query: 144 ----KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDL 198 + + + D I ++ L+ ++ A GL +S + S +++ +S L Sbjct: 280 GQQEMIMVRISDKETILWDGLDLQRRIDFAMMGLDLCISRAEIESSLRRSLATDISLDHL 339 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + +I +++ L+ ++ ++A+ AR LL + EVL + + +Q + F R Sbjct: 340 KQTIILNAKALMARDADFARFAARILLSYIYEEVLGWDIVRDGIGS---LQTFHRRAFRR 396 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL----HINGSRI 314 ++ GV+ ++ ++DFDL LA+ L D F+YLG+ LYDRY + R+ Sbjct: 397 NLQRGVEIDRINAKLLDFDLDKLADALDPAADMDFDYLGIHTLYDRYLIIDKKTKPAKRL 456 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ F+MRVAMGL ++E + ++ + Y + S F STPTLFNSGT H QLSSC+L Sbjct: 457 ETPQLFWMRVAMGLFVREEDPTEKVIALYRMYKSRRFCSSTPTLFNSGTLHSQLSSCYLY 516 Query: 375 TVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D++ I + ENA L+K++GGLG WT VRG G++I GTNG+SQGVIPFLK+ ND Sbjct: 517 KVDDNIESIMIRGIAENAFLSKWAGGLGGSWTAVRGTGSYIKGTNGESQGVIPFLKLHND 576 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 VAVNQGGKR+G+ CAYLETWH D+ +FLDLRKN GD+RRRTHDMNTANW+PDLFMKR+ Sbjct: 577 QLVAVNQGGKRRGSGCAYLETWHNDIVDFLDLRKNVGDERRRTHDMNTANWVPDLFMKRM 636 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + WTLF +E DLH+LYG+ FE Y YE A G++ + ++I A+ LW+ ML + Sbjct: 637 EARSHWTLFRANETPDLHELYGQAFEKRYLEYEAMAAEGKV-LGKQIPAIDLWKSMLKAI 695 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 FETGHPWITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S +ETAVCNLGS+ L H Sbjct: 696 FETGHPWITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSKDETAVCNLGSVILENHLDE 755 Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+ KL T+R AVR LDNVIDIN + + AK +N HR IGLG+MG Q +L+ + Sbjct: 756 AGNIDHTKLRETVRMAVRALDNVIDINFYPTDAAKTANTRHRPIGLGVMGLQYSLYRKGL 815 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+AS EAV+ DE ME ++++A AS +LA E G YS++ GS W +G+ P D++ LL + Sbjct: 816 PFASKEAVDFNDEVMEAVAYYAYEASSDLAAELGKYSTYPGSKWSRGLLPQDTVDLLEKE 875 Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R E + + R ++ W +++++ GMRNSN +AIAPTATI+NI G S I+P + N + Sbjct: 876 RGEPVDVVRGGKMDWSPVREKIAKQGMRNSNVLAIAPTATISNIMGSSPCIEPLFTNNFT 935 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+ G++ V+N +LV +LK+RDLW + LKY DG + ++ IP DLK+ +ATAF + Sbjct: 936 KSNLGGNYVVLNPYLVKDLKKRDLWTNEVAERLKYFDGELAAMDEIPADLKRKYATAFSV 995 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 D +++++A+RRQKWIDQ+QS+NL+ + + L +YR AW GLKTTYYLR++ A+S+ Sbjct: 996 DWAYVLDAAARRQKWIDQSQSVNLWCPDTDMRTLSHMYRAAWRKGLKTTYYLRTKGASSI 1055 Query: 912 EKST 915 E ST Sbjct: 1056 EGST 1059 >gi|289582311|ref|YP_003480777.1| ribonucleoside-diphosphate reductase, subunit alpha [Natrialba magadii ATCC 43099] gi|289531864|gb|ADD06215.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrialba magadii ATCC 43099] Length = 836 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/763 (51%), Positives = 530/763 (69%), Gaps = 14/763 (1%) Query: 162 LEMIVEEACSGLQDVSSKI----VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217 +E +++ A +G ++V S + +E +N+YDG S + A++ + IE+EP Y Sbjct: 15 IESVLDRAQTGTEEVLSPAERDQLATEIERNLYDGASPDECYQAILQALTARIEREPTYK 74 Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-F 276 ++ A ++ R VL + T ++ Y + F +E V+ LL E +++ F Sbjct: 75 QLAAAVFRQRYYRTVLG------EDLTGAALETAYRDTFVTNLERAVELDLLDERLLERF 128 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETE 334 DL LA L+ ERD FEY+ ++ L RYFL NG +E+PQAF+MRVAMGLAL+E + Sbjct: 129 DLEKLAAALELERDEQFEYMAMETLTQRYFLKTEENGEHLELPQAFWMRVAMGLALEEDD 188 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 ++RA+EFY++LS+ F STPTLF+SG+ HPQLSSC+LTTV D L IF + + +A L+ Sbjct: 189 PQQRALEFYDVLSALEFTPSTPTLFHSGSTHPQLSSCYLTTVQDSLENIFDSYKHHAQLS 248 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K+SGGLGNDWT +R GA I T +S GV+PFL+++ND A+N+ GKR+GA CAYL Sbjct: 249 KWSGGLGNDWTNLRSAGALIESTGVESTGVVPFLRISNDVTSAINRSGKRRGAACAYLAC 308 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH+D F DL++NTGD+RRRT DMNTA WIPDLFMKRV + WTLFSPDEV +LHDL Sbjct: 309 WHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEADEEWTLFSPDEVPELHDLS 368 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+ FE Y YERQAD GE++ + ++ A LWR MLT LFETGHPW+TFKDPCN+RSPQ Sbjct: 369 GEAFEERYCEYERQADNGELRQYERVDAAELWRTMLTRLFETGHPWLTFKDPCNVRSPQD 428 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 HVG VHSSNLCTEITLN+S++E AVCNLGS+NL H ++ + D + LA TI TA+R+LDN Sbjct: 429 HVGTVHSSNLCTEITLNTSADEHAVCNLGSVNLATHVSDGELDREHLADTIETAMRMLDN 488 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+D+ + E+AK+SN HR +GLG MGF AL L IP S +AVE A+ EF+S+HA Sbjct: 489 VVDLCFYPTEEAKRSNMRHRPVGLGTMGFHDALMELGIPMDSEDAVEAANRWQEFVSYHA 548 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753 I S +LA ERGAY S++GS WD+G+ P D++ LL + RD E+ +R L W +++ V Sbjct: 549 ILNSSKLAGERGAYPSYEGSKWDRGLLPQDTVDLLEDERDREIPTDREETLEWATVREHV 608 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFTV+N LV +LK R Sbjct: 609 AEHGMRNSNTMAIAPTATVSTINGTTPSIEPIYSNLYVKSNMSGDFTVINDKLVADLKAR 668 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 D WD+ M+ LK+HDGS+ I+ +PDDL++++ AFEIDP + + RQ WIDQ+ S Sbjct: 669 DRWDDEMVDRLKFHDGSVQEIDTVPDDLQELYRGAFEIDPRHQLRLTAHRQTWIDQSVSH 728 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 N++ G LD +YR AW +GLKTTYYLR+ A+ +EKSTL Sbjct: 729 NVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTL 771 >gi|257053404|ref|YP_003131237.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus utahensis DSM 12940] gi|256692167|gb|ACV12504.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus utahensis DSM 12940] Length = 815 Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/764 (51%), Positives = 511/764 (66%), Gaps = 12/764 (1%) Query: 159 SKRLEMIVEEACSGLQDV--SSKIVLSETY-KNMYDGLSESDLETALIFSSRTLIEKEPN 215 + R+ I++ A G V S + L +N Y G +++ A++ + IE +P Sbjct: 9 TDRIASILDRATDGEPTVTESDRTALRRAIDENCYAGADRAEVYEAILGTLSARIEAKPA 68 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 Y +V AR ++ EV+ + T E+ Y F IE GV LL ++D Sbjct: 69 YKRVAARVFRQRYYHEVIG------EDLTGTELDRAYRTIFRENIERGVATDLLDTRLVD 122 Query: 276 -FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET 333 FDL LA L ERD FEYL ++ LY RYFL N G +E+PQAF+MRVAMGLA++E Sbjct: 123 RFDLDALAEYLAPERDEHFEYLAMETLYQRYFLRTNDGEHLELPQAFWMRVAMGLAVEED 182 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + RA EFY++LS F STPTLF+SGT HPQLSSC+LTTVPDDL GIF A + +A L Sbjct: 183 DPNARAKEFYDVLSKLEFTPSTPTLFHSGTTHPQLSSCYLTTVPDDLEGIFDAYKHHAQL 242 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+SGGLGNDWTP+R GA I T +S GV+PFL+++ND A+N+ GKR+GA CAYL Sbjct: 243 SKWSGGLGNDWTPLRAEGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYLA 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH+D F+DL++ TGD+RRRT DMNTA WIPDLFM+RV WTLFSPDEV DLH+ Sbjct: 303 IWHLDFPAFVDLKRATGDERRRTPDMNTAAWIPDLFMERVQAGESWTLFSPDEVGDLHEA 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G+ F Y YE+ A+ G+I+ F + A LWR +LT LFETGHPW+TFKDPCNI SPQ Sbjct: 363 TGEAFAEKYREYEQAAENGDIENFETVEAAELWRTLLTRLFETGHPWVTFKDPCNIGSPQ 422 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 H G + SSNLCTEITLN+S++E AVCNLGS+N H + + D D L T+ TA+R+LD Sbjct: 423 DHEGTIRSSNLCTEITLNTSTDEHAVCNLGSVNFATHMRDGELDRDYLEDTVETAMRMLD 482 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NV+D+ + E+A+ SN HR +GLG MGF AL + +P S EAVE A+ EF+++H Sbjct: 483 NVVDLCFYPTEEAEDSNMRHRPVGLGTMGFHEALMEIGVPMNSNEAVEKANRWQEFVAYH 542 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKR 752 AI S ELA ERGAY SF+GS WD+ + P D++ LL E R E+ RT L WD ++K Sbjct: 543 AIRTSSELAGERGAYPSFEGSKWDRDILPQDTVDLLEEERGREIPTERTETLEWDAVRKS 602 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFT+VN LV +L++ Sbjct: 603 IAEHGMRNSNTMAIAPTATVSTINGTTASIEPQYSNLYVKSNMSGDFTIVNDHLVADLRE 662 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 RDLWD+ M +KYHDGSI IE IP+DL++++ AFEIDP + + RQ WIDQ+ S Sbjct: 663 RDLWDDEMRDRIKYHDGSIQEIEAIPEDLRELYRGAFEIDPRHQLRLTAHRQTWIDQSVS 722 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 N++ G LD IY AW +GLKTTYYLR+ A+ VEKSTL Sbjct: 723 HNVFFPSTDGTLLDDIYTTAWELGLKTTYYLRTLGASQVEKSTL 766 >gi|313117006|ref|YP_004038130.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogeometricum borinquense DSM 11551] gi|312294958|gb|ADQ68994.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogeometricum borinquense DSM 11551] Length = 845 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/801 (48%), Positives = 534/801 (66%), Gaps = 16/801 (1%) Query: 162 LEMIVEEACSGLQDVSSKIVL----SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217 + I+ +A +G +DV + V+ +ET +N+YDG S ++ AL + IE++P Y Sbjct: 12 VRTILNQARTGYEDVLTDEVMDRLVTETERNLYDGASIDEVYEALEGVTTARIERDPAYK 71 Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-- 275 V A + R V ++ + + Y E F +E GV LL E ++D Sbjct: 72 YVAADIHRRRYFRRV---TGEQLSETADDDTATTYRETFAANLERGVDEDLLDERLLDGR 128 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGLALKET 333 FD+ LA+ L ERD F+Y+ + L RYF+ ++G +E+PQAF+MRVAMGLA++E Sbjct: 129 FDIDELADALVLERDDKFDYIAMSTLTQRYFIKTEVDGDPLELPQAFWMRVAMGLAIEED 188 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + + RA+EFY++LS F STPTLF+SGT HPQLSSC+LTTV DDL IF + + +A L Sbjct: 189 DPQARALEFYDVLSRLLFTPSTPTLFHSGTTHPQLSSCYLTTVEDDLEHIFDSYKHHAQL 248 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+SGGLGNDWT +R GA I T +S G +PFLK++ND A+N+ GKR+GA C YLE Sbjct: 249 SKWSGGLGNDWTNLRAEGALIESTGVESTGTVPFLKISNDVTAAINRSGKRRGAACGYLE 308 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH+D FLDLR+NTGD+RRRTHDMNTA W+PDLFM+RV + WTLFSPDEV +LH+ Sbjct: 309 AWHMDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMERVENDETWTLFSPDEVPELHET 368 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG+EF Y YE +A+ GE++ + + A LWR MLT LFETGHPWITFKDPCN+RSPQ Sbjct: 369 YGEEFAELYREYEEKAEAGELRQYETVDAADLWRTMLTRLFETGHPWITFKDPCNVRSPQ 428 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 HVG VHSSNLCTEITLN+S+EE AVCNLGS+NL H A+++ D + LA TI TA R+LD Sbjct: 429 DHVGTVHSSNLCTEITLNTSAEEHAVCNLGSVNLSNHVADSELDREALADTIETATRMLD 488 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NV+D+ + ++A+ SN HR +GLG+MGF AL + AS EAVE A+ EF+S+H Sbjct: 489 NVVDLCFYPTDEAEYSNMRHRPVGLGVMGFHDALMQVGTSMASEEAVEAANRWQEFVSYH 548 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELKKR 752 I S LA+ERGAY +F+GS WD+G+ P D++ L AE E+ +R+ + WD ++ Sbjct: 549 TILNSSRLAKERGAYETFEGSKWDRGILPHDTVDRLEAERGREIPTDRSETMDWDRVRDH 608 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + GMRNSN MAIAPTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N LV++LK Sbjct: 609 IAEHGMRNSNTMAIAPTATISTINGTTPSIEPIYSNLYVKSNMSGDFTVINEQLVDDLKA 668 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LWD+ M+ +K+ DGSI + IP+++++++ +AFEIDP + + R +WIDQ+ S Sbjct: 669 EGLWDDEMVDQIKFFDGSIQEVSAIPEEMRELYRSAFEIDPRHQLRLTAHRGQWIDQSIS 728 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GVDGKLNAVPV 928 N++ G LD +Y+ AW +G+KTTYYLR+ A+ +EKSTL G + N Sbjct: 729 HNVFFPSTDGSLLDDVYKTAWRLGVKTTYYLRTLGASQIEKSTLDMAEYGRTQRRNESEA 788 Query: 929 TDPNSSTHSLGIPSSCTSDTE 949 T S + G ++ DT+ Sbjct: 789 TADRDSNDNGGNVTAADGDTD 809 >gi|300709534|ref|YP_003735348.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus jeotgali B3] gi|299123217|gb|ADJ13556.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus jeotgali B3] Length = 797 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/799 (50%), Positives = 530/799 (66%), Gaps = 18/799 (2%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 +E I+E+A + S + ++ Y+G S ++ A+I + I++ P Y V A Sbjct: 11 IEAILEQAWDDRAEGSPDDIARAARRDCYEGASREEVYEAIIGALTARIDRVPEYRTVAA 70 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R RR V P + + Y + F IE GV+A LL E M ++DL L Sbjct: 71 RVFR---RRYFEERVGVAPD-----DHEAAYRDSFVASIERGVEADLLDERMGEYDLSRL 122 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--EKEKRA 339 A L+ RD +Y+ ++ L RYFL IE+PQ F+MRVAMG+AL+E E+EK A Sbjct: 123 AEALEPTRDDRLDYMAMETLSQRYFLREGDEPIELPQTFWMRVAMGIALREAPEEREKYA 182 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 EFY+LLS+ F+ STPTLF++GT HPQLSSC+LTTVPDDL GIF A +E+A L+K+SGG Sbjct: 183 KEFYDLLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEHAKLSKWSGG 242 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 LGNDWTP+R GA I T +S G +PFLK+AND A+N+ GKR+GA CAYLE WH+D Sbjct: 243 LGNDWTPLRASGARISSTGVESTGTVPFLKIANDVTGAINRSGKRRGAACAYLEAWHMDF 302 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLDLR+NTGD+RRRTHDMNTA W+PDLFMKRV + W LFSP+EV DLH YG+EFE Sbjct: 303 PAFLDLRRNTGDERRRTHDMNTAAWVPDLFMKRVQNDEKWMLFSPEEVPDLHGTYGREFE 362 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 YE YER+A+ GE+ + + A LWR+ LT LFETGHPWITFKDPCN+RSPQ H GV+ Sbjct: 363 ERYEEYERRAEAGELDQYERCEAAELWRRTLTRLFETGHPWITFKDPCNVRSPQDHAGVI 422 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +SSNLCTEITLN+S EETAVCNLGS+NL H + D + LA T+ TA+R+LDNV+D+N Sbjct: 423 NSSNLCTEITLNTSEEETAVCNLGSVNLSRHVIEDGLDREALAETVNTAMRMLDNVVDLN 482 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + EKA++SN HR +GLG MGF AL IP S +AVE AD + E +S+HAI S Sbjct: 483 FYPTEKAERSNMRHRPVGLGTMGFHDALLEQDIPMNSEKAVEFADRTQELVSYHAILGSS 542 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGM 758 ELA ERGAY S++GS WD+ +FP D++ +L E R E+ ++ RL W +++ V GM Sbjct: 543 ELAAERGAYGSYEGSKWDRDLFPQDTVSILEEERGREIPIDVEERLDWGRVREHVSEHGM 602 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNSN MA+APTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N LV++L++R LW + Sbjct: 603 RNSNTMAVAPTATISTIAGTTPSIEPIYSNLYVKSNMSGDFTVINDHLVSDLRERGLWTD 662 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + YHDGSI I+ IP+D+ ++H AFEIDP + ++ R WIDQ QS N++ Sbjct: 663 EIRDRITYHDGSIQEIDAIPEDVTELHRGAFEIDPRHQLRLSAERATWIDQGQSHNVFFP 722 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---KGVDGKLNAVPVTDPNSST 935 G L +Y AW +GLKTTYYLR+ A+ VEK+TL + D + D Sbjct: 723 STDGSLLAGVYETAWELGLKTTYYLRTLGASQVEKTTLDMREYDDTQFRDSDDDDDEDEG 782 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + G+PS D CE CQ Sbjct: 783 N--GLPS--VEDPTCEACQ 797 >gi|15791174|ref|NP_280998.1| ribonucleotide-diphosphate reductase alpha subunit [Halobacterium sp. NRC-1] gi|169236930|ref|YP_001690130.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium salinarum R1] gi|10581792|gb|AAG20478.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1] gi|167727996|emb|CAP14784.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium salinarum R1] Length = 804 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/781 (49%), Positives = 524/781 (67%), Gaps = 18/781 (2%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L+E +N YD + + AL+ + I++ P Y V R L E+L R ++ Sbjct: 35 ILTEATRNAYDDATTDERYDALLGALTGRIDRHPAYKTVAGRVLRERLERRLVDDYDPAT 94 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + A + F I+ G+ A LL E M D+DL LA+ + RD +Y+ + Sbjct: 95 RDAATRQA-------FRDGIQRGLDADLLDERMGDYDLNRLADAITPARDDRLDYMAMDT 147 Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPT 357 L RYFL + E+PQ F+MRVAMG+AL+E ++E+ A+EFY+ LS+ F+ STPT Sbjct: 148 LRQRYFLREPDADPFELPQPFWMRVAMGVALREDPADREEYAIEFYDALSTLRFVHSTPT 207 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 LF++GT H QLSSC+LTTVPDDL GIF A +E+A L+K+SGGLGNDWTP+R G+ I T Sbjct: 208 LFHAGTTHAQLSSCYLTTVPDDLDGIFDAYKEHAKLSKWSGGLGNDWTPLRAAGSLIEST 267 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 +S G +PFLK++ND A+N+ GKR+GA AYL WH+D F DLR+NTGD+RRRTH Sbjct: 268 GVESTGTVPFLKISNDVTAAINRSGKRRGAAAAYLACWHLDFPAFCDLRRNTGDERRRTH 327 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 DMNTA WIPDLFM+RV + WTLFSP E DL++LYG +F Y YE AD G+I+ F Sbjct: 328 DMNTAAWIPDLFMERVRADKQWTLFSPKETGDLYELYGSDFAERYREYEAMADDGDIQRF 387 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 ++ A LWR MLT LFETGHPW+TFKDPCN+RSPQ H G V SSNLCTEITLN+S EET Sbjct: 388 ERVDATDLWRTMLTRLFETGHPWLTFKDPCNVRSPQDHAGTVRSSNLCTEITLNTSEEET 447 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 AVCNLGS+NL H + D ++L+ T+ TA+R+LDNV+D+N + E A++SN HR +G Sbjct: 448 AVCNLGSVNLARHLDDGDIDREQLSETVETAMRMLDNVVDLNFYPTENAERSNMRHRPVG 507 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MGF AL + +P AS +A++ AD E++++HAI AS +LA ERG Y S++GS WD Sbjct: 508 LGVMGFHDALQQMRVPMASDDALDRADALQEYVAYHAIGASADLAAERGTYESYEGSKWD 567 Query: 718 QGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + VFP D++ L R E+ + R RL W ++++RV T GMRNSN MA+APTATI+ I Sbjct: 568 RDVFPQDTVDRLESERGREIPVPREERLDWSDVRQRVATHGMRNSNTMAVAPTATISTIA 627 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G + SI+P Y NLYVKSNMSGDFTVVN LV +L++RDLW E + L YHDGS+ ++ Sbjct: 628 GTTPSIEPVYSNLYVKSNMSGDFTVVNDRLVADLEERDLWTEELRDKLTYHDGSVQELDA 687 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 +P+D+++++ TAFEIDP + A+RR WIDQ+QS+N++ E G KL +Y+ AW +G Sbjct: 688 VPEDVQELYRTAFEIDPRHQLRLAARRGVWIDQSQSVNVFFPETDGSKLSEVYQTAWELG 747 Query: 897 LKTTYYLRSRSATSVEKSTL---KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 LKTTYYLR+ A+ +EK+TL + D + + L PS D CEVC Sbjct: 748 LKTTYYLRTLGASQIEKTTLDMDEYDDTQFRGDDDGEDADGDGDL--PS--VEDPTCEVC 803 Query: 954 Q 954 Q Sbjct: 804 Q 804 >gi|322368526|ref|ZP_08043094.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus paucihalophilus DX253] gi|320551810|gb|EFW93456.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus paucihalophilus DX253] Length = 815 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/742 (50%), Positives = 506/742 (68%), Gaps = 10/742 (1%) Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + + SE + +YDG S ++ A+ + +E+EP + ++ A + EV+ Sbjct: 33 ETLASEIERTLYDGASTDEVYQAVTQAFSARVEREPAFKRIAAAAFRQGYYHEVIG---- 88 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLG 297 + +E+ Y F +E V+ L E + + FDL LA+ L+ +RD FEY+ Sbjct: 89 --ENLRGYELDREYRATFIENLERAVEIGRLDERLPERFDLDDLASYLEPDRDERFEYMA 146 Query: 298 LQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 ++ L RYFL NG R+E+PQAF+MRVAMGLA++E + ++RA EFY++LS F ST Sbjct: 147 METLAQRYFLKTEENGERLELPQAFWMRVAMGLAVEEDDPQRRAKEFYDVLSKLEFTPST 206 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTLF+SG+ HPQLSSC+LTTV DDL IF + +A L+K+SGGLGNDWT +R GA I Sbjct: 207 PTLFHSGSTHPQLSSCYLTTVSDDLEHIFDSYNHHAHLSKWSGGLGNDWTNLRASGALIE 266 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T +S GV+PFL+++ND A+N+ GKR+GA CAYL WH+D F+DL++NTGD+RRR Sbjct: 267 STGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYLACWHLDFPAFIDLKRNTGDERRR 326 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 T DMNTA WIPDLFMKRV WTLFSPDEV DLHDL G+ F Y YE+QA+ GE + Sbjct: 327 TPDMNTAAWIPDLFMKRVEAGEEWTLFSPDEVPDLHDLSGEAFAEKYREYEKQAEAGEFR 386 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 + ++ A LWRK LT LFETGHPW+TFKDPCN+RSPQ H G VHSSNLCTEITLN+S + Sbjct: 387 QYERVDAEELWRKTLTRLFETGHPWLTFKDPCNVRSPQDHAGTVHSSNLCTEITLNTSED 446 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E AVCNLGS+N H + + ++D LA TI TA+R+LDNV+D+ + ++A+ SN HR Sbjct: 447 EHAVCNLGSVNFATHVSGGELNHDHLAETIETAMRMLDNVVDLCFYPTDEAEHSNMQHRP 506 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG MGF AL L IP S +A+E A+ EF+S+HAI S +LA ERG Y S++GS Sbjct: 507 VGLGTMGFHDALMELGIPMDSEDAIEKANRWQEFVSYHAIHNSSKLAAERGTYPSYEGSK 566 Query: 716 WDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ L AE E+ R L W +++ V+ GMRNSN MAIAPTAT++ Sbjct: 567 WDRGMLPQDTVDTLEAERGREIPTEREETLDWYVVREHVEEHGMRNSNTMAIAPTATVST 626 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + SI+P Y NLYVKSNMSG+FTVVN LV++LK +LWDE M+ +KYHDG+I I Sbjct: 627 INGTTPSIEPMYSNLYVKSNMSGEFTVVNDHLVDDLKALELWDEEMVDRIKYHDGTIQEI 686 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 + +PDDLK+++ AFEIDP + + RQ WIDQ+ S N++ G LD +Y+ AW Sbjct: 687 DAVPDDLKELYRGAFEIDPRHQLRLTAHRQTWIDQSVSHNVFFPSTDGTLLDDVYKTAWR 746 Query: 895 MGLKTTYYLRSRSATSVEKSTL 916 +GLKTTYYLR+ A+ +EKSTL Sbjct: 747 LGLKTTYYLRTLGASGIEKSTL 768 >gi|300113308|ref|YP_003759883.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosococcus watsonii C-113] gi|299539245|gb|ADJ27562.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosococcus watsonii C-113] Length = 1336 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/541 (65%), Positives = 422/541 (78%), Gaps = 15/541 (2%) Query: 425 IPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 +PF LKV D T V+ GGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRT Sbjct: 800 LPFVYDLKVEGDPSYMTTTALVHNGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 859 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANW+PDLFMKRV +N GWTLFSPDE DLHDL G+ FE AY YE +A RGEIK Sbjct: 860 HDMNTANWVPDLFMKRVAENGGWTLFSPDETPDLHDLVGQAFEAAYLGYEGKASRGEIKN 919 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 F+K AV LWRKML+MLFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E Sbjct: 920 FKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDE 979 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 AVCNLGSINL H + + KL TI TA+R+LDNVID N +++ A++SN HR + Sbjct: 980 IAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPV 1039 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLGLMGFQ AL+ IPYAS AVE AD SME IS++AI AS +LA ERG+Y +FK SLW Sbjct: 1040 GLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKASSDLAAERGSYPTFKDSLW 1099 Query: 717 DQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 QG+ PIDSI LL E R +R+ L WD L+++VKT+GMRNSNCMAIAPTATI+NI Sbjct: 1100 SQGILPIDSISLLEENRGGYFQQDRSRTLDWDSLREQVKTVGMRNSNCMAIAPTATISNI 1159 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 CGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS I+ Sbjct: 1160 CGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVRDLKAQNLWDEVMVNDLKYFDGSAQPID 1219 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIPD+LK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ Sbjct: 1220 RIPDELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVR 1279 Query: 896 GLKTTYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVC 953 GLKTTYYLRS AT VEKST+ G KLNAV +S + P +C+ D +CE C Sbjct: 1280 GLKTTYYLRSLGATHVEKSTMTSGQANKLNAV----QSSYIQTSEAPQACSILDPDCEAC 1335 Query: 954 Q 954 Q Sbjct: 1336 Q 1336 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/411 (56%), Positives = 298/411 (72%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG VT FDPSKI+ A+ KAF+A+EG GA+ S R+ +++L EQ V + ++ Sbjct: 34 RVIRRNGKVTGFDPSKIAVAMTKAFLALEGNGAAMSKRIHQTVEDLAEQVVEACTRRLET 93 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 VHIE IQDQVE +LM+ GHHKI R YVLYREER+ RA + P +++ + Sbjct: 94 GGTVHIEGIQDQVELALMRGGHHKIARAYVLYREERARERAQGAAKNKKKATEPPIQVTL 153 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG + RL I+EEAC L + + +L+ET +N++DG++E D+E ALI S+RT Sbjct: 154 ADGHTAPLDKARLTHIIEEACQNLPETQPQAILNETLRNLFDGVAEQDVERALIMSARTF 213 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IEKEPNY+ TAR LL+ LRRE L+ ++ AT EM YPEYF YI +G + +L+ Sbjct: 214 IEKEPNYSYATARLLLDSLRREALSFIHGMETHATQQEMIERYPEYFAAYIRQGAEIQLI 273 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + +DL L L+ ERDF F YLGLQ LYDRYF+H G+R E+PQAFFMRVAMGLA Sbjct: 274 DSRLTQYDLTRLGQALRPERDFQFTYLGLQTLYDRYFIHSGGTRFELPQAFFMRVAMGLA 333 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 + E E+E+RA+EFY LLSSF FM STPTLFNSG+ PQLSSC+LTTVPDDL GI+ A+++ Sbjct: 334 INEIEREERAIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVPDDLDGIYSAIKD 393 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKV NDTAVAVNQ Sbjct: 394 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVTNDTAVAVNQ 444 >gi|77165985|ref|YP_344510.1| ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|254436379|ref|ZP_05049885.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Nitrosococcus oceani AFC27] gi|76884299|gb|ABA58980.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|207088069|gb|EDZ65342.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Nitrosococcus oceani AFC27] Length = 1336 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/541 (65%), Positives = 419/541 (77%), Gaps = 15/541 (2%) Query: 425 IPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 +PF LKV D T V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRT Sbjct: 800 LPFVYDLKVEGDPSYMTTTALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRT 859 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANW+PDLFMKRV ++ GWTLFSPDE DLHDL G+ FE AY YE +A RGEIK Sbjct: 860 HDMNTANWVPDLFMKRVAEDGGWTLFSPDETPDLHDLVGQAFEAAYLGYEDKASRGEIKN 919 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 F+K AV LWRKML+MLFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E Sbjct: 920 FKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDE 979 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 AVCNLGSINL H + + KL TI TA+R+LDNVID N +++ A++SN HR + Sbjct: 980 IAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPV 1039 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLGLMGFQ AL+ IPYAS AVE AD SME IS++AI AS LA ERG+Y +F+GSLW Sbjct: 1040 GLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKASSNLAAERGSYHTFEGSLW 1099 Query: 717 DQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 QG+ PIDSI LL E R +R+ L WD L+++VKT+GMRNSNCMAIAPTATI+NI Sbjct: 1100 SQGLLPIDSISLLEESRGSYFQQDRSHTLDWDSLREQVKTVGMRNSNCMAIAPTATISNI 1159 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 CGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS I+ Sbjct: 1160 CGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKAQNLWDEVMVNDLKYFDGSAQPID 1219 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP++LK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EP+GKKLD +Y+ AW+ Sbjct: 1220 RIPEELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPNGKKLDNLYKLAWVR 1279 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG-KLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVC 953 GLKTTYYLRS AT VEKST+ KLNAV S P +C+ D +CE C Sbjct: 1280 GLKTTYYLRSLGATHVEKSTMTSDQANKLNAVQSGYIQKSE----APQACSVQDPDCEAC 1335 Query: 954 Q 954 Q Sbjct: 1336 Q 1336 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 235/411 (57%), Positives = 299/411 (72%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG VT FDPSKI+ A+ KAF+A+EG GA+ S R+ ++ LTEQ V + ++ Sbjct: 35 RVIRRNGKVTGFDPSKIAVAMTKAFLALEGNGAAMSKRIHQTVEVLTEQVVEACTRRLET 94 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 VHIE IQDQVE +LM+ GHHKI R YVLYREER+ RA + I P +++ + Sbjct: 95 GGTVHIEGIQDQVELALMRGGHHKIARAYVLYREERARERAQTAAKNKKKTIEPPIQVTL 154 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG + RL IVEEAC L + + +++ET +N++DG++E D+E ALI S+RT Sbjct: 155 ADGRTAPLDKARLTRIVEEACQNLPETQPQAIINETLRNLFDGVAEQDVERALIMSARTF 214 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IEKEPNY+ TAR LL+ LRRE L+ ++ AT EM YPEYF YI +G + +L+ Sbjct: 215 IEKEPNYSYTTARLLLDSLRREALSFIHGMETHATQQEMIERYPEYFAAYIRQGAEIQLI 274 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + +DL L L+ ERDF F YLGLQ LYDRYF+H G+R E+PQAFFMRVAMGLA Sbjct: 275 DSRLTQYDLTRLGQALRPERDFQFTYLGLQTLYDRYFIHSGGTRFELPQAFFMRVAMGLA 334 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 + E E+E+RA+EFY LLSSF FM STPTLFNSG+ PQLSSC+LTTVPDDL GI+ A+++ Sbjct: 335 INEIEREERAIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVPDDLDGIYSAIKD 394 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKV NDTAVAVNQ Sbjct: 395 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVTNDTAVAVNQ 445 >gi|226945385|ref|YP_002800458.1| ribonucleoside-diphosphate reductase subunit alpha [Azotobacter vinelandii DJ] gi|226720312|gb|ACO79483.1| ribonucleoside-diphosphate reductase, alpha subunit precursor [Azotobacter vinelandii DJ] Length = 1338 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/547 (63%), Positives = 426/547 (77%), Gaps = 18/547 (3%) Query: 423 GVIPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 V PF LKV D T+ + GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRR Sbjct: 795 AVKPFVFDLKVEGDESYMTTSGLAHNGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRR 854 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 RTHDMNTANWIPDLFMKRV ++ WTLFSP +V DLHDL G+ FE YE YE G+I Sbjct: 855 RTHDMNTANWIPDLFMKRVFEDGQWTLFSPSDVRDLHDLTGRAFEERYEYYEALTQYGKI 914 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K+F+ I+A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S Sbjct: 915 KLFKTIAAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSD 974 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E AVCNLGSINL+ H + + D +KL+ T++TAVR+LDNVIDIN ++++ A+ +N HR Sbjct: 975 SEIAVCNLGSINLVNHINDGRLDTEKLSRTVKTAVRMLDNVIDINYYSVDTARNANFRHR 1034 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ AL+L HI Y S A+ AD SME IS++AI AS +LA+ERGAYSSF+GS Sbjct: 1035 PVGLGIMGFQDALYLQHIAYGSEAAIAFADRSMEAISYYAIQASCDLAEERGAYSSFEGS 1094 Query: 715 LWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 LW +G+ P+DS+ +LAE R + ++R+S L W L++RVK GMRNSN MAIAPTATI Sbjct: 1095 LWSRGILPLDSLDILAEQRGTKYIEVDRSSTLDWAPLRERVKK-GMRNSNIMAIAPTATI 1153 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV++LK R+LWD M++DLKY+DGS+ Sbjct: 1154 SNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVHDLKARELWDGVMVNDLKYYDGSVQ 1213 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 IERIP DLK ++ATAFE++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR A Sbjct: 1214 QIERIPTDLKALYATAFEVETKWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMA 1273 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PVTDPNSST---HSLGIPSSCTSDT 948 W GLKTTYYLR+ +ATS EKST+ GKLNAV V D + S +P +C+ D Sbjct: 1274 WFRGLKTTYYLRALAATSAEKSTIN--TGKLNAVSSVIDESLSAAEPKPAPVPQACSIDN 1331 Query: 949 -ECEVCQ 954 +CE CQ Sbjct: 1332 PDCEACQ 1338 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/428 (53%), Positives = 306/428 (71%), Gaps = 4/428 (0%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 D+ P LA P +++ VIKRNG V ++ KI+ AI KAF+AVEG A+ S R+ + + Sbjct: 19 DSTPDLAATAPGQLR---VIKRNGTVVAYTDDKITVAITKAFLAVEGGTAAASSRIHETV 75 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ T + S +HIE+IQDQVE +LM++G HK+ R+YV+YRE R+ R Sbjct: 76 ARLTEQVTTTFRRRMPSGGTIHIEEIQDQVELALMRAGEHKVARDYVIYREARAQERKRA 135 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + + A P +++ DG L+ + RL+ I+ EAC GL +V + ++ ET KN+YDG Sbjct: 136 AAVQEVAQPHPSIRVARADGVLVPLDMGRLDTIIGEACEGLAEVDAALIQKETLKNLYDG 195 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + ATHHEM LY Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMADLY 254 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 Y+E+G++ LL + +FDLV L L +ERD F YLGLQ LYDRYFLH +G Sbjct: 255 ARALPVYVEKGIEFELLDPKLREFDLVRLGAALDHERDQQFTYLGLQTLYDRYFLHKDGI 314 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLA++E +KE+RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 315 RFELPQVFFMRVAMGLAIEEPQKEERAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 375 LTTVPDDLSGIYNAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434 Query: 433 DTAVAVNQ 440 DTAVAVNQ Sbjct: 435 DTAVAVNQ 442 >gi|301629347|ref|XP_002943804.1| PREDICTED: ribonucleoside-diphosphate reductase subunit alpha-like [Xenopus (Silurana) tropicalis] Length = 1234 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/587 (59%), Positives = 429/587 (73%), Gaps = 14/587 (2%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 Q+++RNG V +F+P KI+ A+MKAF+AV G + S V++++ LT V L + Sbjct: 34 QILRRNGSVAAFEPQKIAVALMKAFLAVHGTQGAASASVREVVDELTHTVVRALARSRPG 93 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 HIED+QDQVE LM+ GHH++ R YVLYRE R+ RA Q A + + Sbjct: 94 GGTFHIEDVQDQVELGLMRGGHHEVARAYVLYRERRAQERAQQQAQLLPQAPAIHV---V 150 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D+G + + RL +V ACSGL +V + +++ET +N+YDG+ ++ A I ++RT Sbjct: 151 DNGQRVLLDPLRLRALVASACSGLSSEVQPEPIVAETLRNLYDGIPMDEVYKASILAART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LIEK+P+Y TAR LL + REVL Q M Y F + I++GV L Sbjct: 211 LIEKDPDYTYATARLLLHTIVREVLG------QDVAPAAMGEAYANSFPQCIQKGVDNEL 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L ++ FDL LA L+ +RD F+YLGLQ LYDRYFLH+ +RIE+PQ+FFMRVAMGL Sbjct: 265 LDPQLLQFDLPRLAKALQAQRDLQFDYLGLQTLYDRYFLHVRKARIELPQSFFMRVAMGL 324 Query: 329 ALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AL+E T +RA+EFY +LSSF FM STPTLFNSGT QLSSC+LTTVPD+L GI+ Sbjct: 325 ALREGDLQTTGTERAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDNLEGIY 384 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKR Sbjct: 385 EAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKR 444 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV WTLFSP Sbjct: 445 KGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFSP 504 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 E DLHDLYG+ FE AY YE ADRGE+ +F++++AV LWRKML+MLFETGHPWITFK Sbjct: 505 SETPDLHDLYGQAFERAYCAYEAMADRGELTLFKRVAAVDLWRKMLSMLFETGHPWITFK 564 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 DPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NLL H Sbjct: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNTSETETAVCNLGSVNLLRHI 611 Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 160/304 (52%), Positives = 218/304 (71%), Gaps = 17/304 (5%) Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 +L+ L IPYAS AV ADESME I ++A AS ELA+ERG Y+S++GSLW++G+ P+D+ Sbjct: 933 SLYELRIPYASDAAVAFADESMEAICYYAYWASTELAKERGQYASYRGSLWERGILPLDT 992 Query: 726 IGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + LL + RD + ++R++RL WD L+K++ GMRN+NC+AIAPTATI+NI GV SI+P Sbjct: 993 LNLLQQARDGHVQVDRSTRLDWDALRKKIAQDGMRNANCVAIAPTATISNIVGVDASIEP 1052 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 S+ NL VKSN+SG+FTVVN++LV +LK+ LWD+ M+ DLK+ GS+ I+R P DLK + Sbjct: 1053 SFGNLSVKSNLSGEFTVVNAYLVRDLKRLGLWDDVMVMDLKHFKGSLQPIDRAPQDLKAL 1112 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 +ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR Sbjct: 1113 YATAFEVEPRWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDETYKLAWVRGLKTTYYLR 1172 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPN--------------SSTHSLGIPSSCTSDTEC 950 ++SAT VE ST+ +LNAV P+ ++T + + D C Sbjct: 1173 TQSATHVEMSTVN--KRQLNAVASHGPDDALEAAAAAAQAQMNATPATDVKFCALDDPGC 1230 Query: 951 EVCQ 954 E CQ Sbjct: 1231 EACQ 1234 >gi|330984036|gb|EGH82139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 610 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/627 (55%), Positives = 434/627 (69%), Gaps = 23/627 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 V+KRNG +F+ + I+ A+ KAF A G+ AS+S ++++I ++ E VT + S Sbjct: 4 VVKRNGQPVAFNGALIAAALSKAFNATLGESASQSSHLREVIASIVE-GVTNAVAGKPS- 61 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 V +E IQD VE LM R Y+LYREER+ VR P AP D Sbjct: 62 --VDVETIQDLVERGLMAKDEAATARAYILYREERNKVRRP--------PEAPAQLYYTD 111 Query: 151 DGTLI-SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 + + + L + +AC L +VS+ + ++T KN + G+ D+ A++ ++R + Sbjct: 112 EADQTHPLSVELLTDYLAQACQDLPNVSASKLAADTLKNAFPGIKWGDVLKAMLITTRAM 171 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE+EP+Y+ V AR L +L+ E V AT Y + +E GVK L Sbjct: 172 IEQEPDYSFVNARLLWLELKNES-RAVLGLGSDAT-------YADDLKAALEFGVKNDHL 223 Query: 270 HESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 + ++D FD+ L L+ + D F YLG Q LYDRYFLH NG + E PQ FFMRVAMG Sbjct: 224 NPVLIDGTFDVDQLGRALREKGDMQFTYLGAQTLYDRYFLHSNGQKFERPQVFFMRVAMG 283 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L+E + +RA+EFYNL SSF +M STPTLFN+GT QLSSC+LTTVPDDL GI+ A+ Sbjct: 284 LSLEEKKPTERAIEFYNLFSSFDYMASTPTLFNAGTLRSQLSSCYLTTVPDDLSGIYHAI 343 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA Sbjct: 344 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 403 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV WTLFSP + Sbjct: 404 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDKGQWTLFSPSDA 463 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL GK FE Y YE AD GEIKV+++I+A LWRKML+MLFETGHPW+TFKDPC Sbjct: 464 PDLHDLVGKAFEERYTQYEAMADAGEIKVYKRIAAGDLWRKMLSMLFETGHPWLTFKDPC 523 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL H + + D KL TI T Sbjct: 524 NLRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLPNHIVDGKLDLAKLQKTINT 583 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHR 654 AVR+LDNVIDIN +++ +A+ SN HR Sbjct: 584 AVRILDNVIDINYYSVPQAENSNLKHR 610 >gi|196229991|ref|ZP_03128855.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter flavus Ellin428] gi|196226317|gb|EDY20823.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter flavus Ellin428] Length = 791 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/798 (44%), Positives = 494/798 (61%), Gaps = 64/798 (8%) Query: 15 FPSLAYP-FPEKIKGVQVIKRN-GGVTSFDPS-------KISRAIMKAFMAVEGKGASRS 65 P+++ P FP QVI+R+ G TS P KI++A+ A VEG+ Sbjct: 14 LPAVSTPEFP------QVIRRDLPGDTSGKPRVVPWLGHKIAKAVSAACF-VEGQDDQIG 66 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 ++VQ I+ RL + S VHIE +QD VE +L+ GH K+ Y YR R Sbjct: 67 VQVQAEIE-------YRLRRERPS--FVHIEQLQDMVEETLIDLGHAKVALVYGKYRARR 117 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKR----LEMIVEEACSGLQ-DVSSKI 180 + A + H I P ++ DDG + ++ + + A GL+ ++ Sbjct: 118 A---AEREHG-----IGP---VIEDDGQQLELATREQLGDIRARISFAKIGLKVTLNDDD 166 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT-TVYKK 239 +L+ ++ L+ + ++ ++++L++ + + AR LL + E L V Sbjct: 167 LLARLLRSTSISLTPVERRDTIVLNAKSLLDVDADARFFAARILLSYIYEETLPWKVADG 226 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 PQ ++ + + F YI G+ L + +FDL LA L D F++LG+Q Sbjct: 227 PQA-----LKEAHRKAFLEYIPRGIALGRLEPRLAEFDLKKLATALDPFADLQFDFLGIQ 281 Query: 300 ILYDRYFLHINGS------RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 LYDRY +H + S R+E PQ F+MRVAMGL+++E E+E+RA +FY + S Sbjct: 282 TLYDRYLIHTHDSVTGRKQRMEAPQVFWMRVAMGLSVQEPEREERAGQFYGIYKSRRACS 341 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 STPTLFN+GT HPQLSSC+L D + I + + L+K++GGLG WT +RG GAH Sbjct: 342 STPTLFNAGTMHPQLSSCYLLYCGDSIEEITETWRRFSHLSKWAGGLGCSWTAIRGAGAH 401 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 IHGTNG+S GVIPFLKV+ND A+AVNQGGKR GA+C+YLE WH D+E+FLDLRK TGDDR Sbjct: 402 IHGTNGESSGVIPFLKVSNDIAIAVNQGGKRPGALCSYLELWHADIEDFLDLRKETGDDR 461 Query: 474 RRTHDMNTANWIPDLFMKR--------VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RRTH+MNTA+WIPDLFMKR +T+ A W+LF E DL +L G+ FE Y Y Sbjct: 462 RRTHNMNTAHWIPDLFMKRLKAISDGTLTKEATWSLFRTSETPDLPELSGRAFEERYLQY 521 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E A G++ RK+ +ALW++ML MLFETGHPW+TFKDPCN+RSPQ H GV+H+SNLC Sbjct: 522 EALAAEGKLWS-RKVRVLALWKRMLEMLFETGHPWMTFKDPCNLRSPQDHTGVIHNSNLC 580 Query: 586 TEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 TEITLN+SS+E AVCNL SINL AH + D+D+L +TI +R+LDNVIDIN + ++ Sbjct: 581 TEITLNTSSDEVAVCNLASINLAAHLREDGALDHDRLRATITVLMRMLDNVIDINFYPVD 640 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 A +N HR +GLGLMG Q AL+ I + +PEAV DE++E I+++A AS +LA E Sbjct: 641 AAANANLRHRPVGLGLMGLQDALYDKGIAFDTPEAVAFNDEALEAIAYYAYEASSDLAAE 700 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 RG Y ++ GS WD+G+ P+D++ L + R L ++RTSRL W L++++ GMRNSNC Sbjct: 701 RGRYQTYAGSKWDRGLMPLDTLAHLEQQRGVPLMVDRTSRLDWTALRQKIAQQGMRNSNC 760 Query: 764 MAIAPTATIANICGVSQS 781 +AIAPTATI+NI G ++ Sbjct: 761 LAIAPTATISNILGARRA 778 >gi|330897025|gb|EGH28546.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] Length = 502 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 307/505 (60%), Positives = 376/505 (74%), Gaps = 21/505 (4%) Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 NTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE Sbjct: 1 NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 60 Query: 528 QADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCT Sbjct: 61 LTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 120 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 EITLN++ +E AVCNLGSINL H + + D DKL T+ AVR+LDNVIDIN +++ +A Sbjct: 121 EITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQA 180 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERG Sbjct: 181 KNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERG 240 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 AY +F+GSLW +G+ P+DS +L E R E ++++ L W ++ RV+ G+RNSN M Sbjct: 241 AYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIM 299 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DL Sbjct: 300 AIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 359 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 KY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKK Sbjct: 360 KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 419 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--- 941 LD YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 420 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 477 Query: 942 -----------SSCTSD-TECEVCQ 954 +C D +CE CQ Sbjct: 478 EAAPAGPAPVPKACAIDEPDCEACQ 502 >gi|239502692|ref|ZP_04662002.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB900] Length = 790 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 355/838 (42%), Positives = 498/838 (59%), Gaps = 76/838 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + +G F+ ++E V A G V S+ V+ + +YDG+ SD++ ALI Sbjct: 1 MNVTKRNGATEPFSPSKIEKAVNWAVDG-TSVESQEVIDKAILLIYDGIKTSDIQQALIK 59 Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + L+ + + + V+AR LL L + TV K + Q YP + Y+E+G Sbjct: 60 GAAKLVSATKADASLVSARLLLLDLYK----TVCGVNGKVSGGGFQ--YP-HIKDYLEKG 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN------------- 310 V +LL ++++DL + +K ERD +F YLGL L DRYF+ N Sbjct: 113 VSLKLLDPELLNYDLERINAAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMS 172 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQL 368 G+ IE+PQ F+MRVAMG+ALKE + + +V +Y L S ++ STPTLFN+GT HPQL Sbjct: 173 GNIIELPQHFWMRVAMGVALKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQL 232 Query: 369 SSCFLTTVPDDLYG---------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 SSC+L V D + IFGA++E A+L+K++GG+G DWTPVRG I GTNG Sbjct: 233 SSCYLNQVSDTIAADEGDNRFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNG 292 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S GV+P++KV N+TAVAVNQGGKRKG+V YLE WH D F +L++ +GDDRRR HD+ Sbjct: 293 ISSGVVPYIKVQNNTAVAVNQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDV 352 Query: 480 NTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 A W+PDL ++R NA W+ FSP +LH+LYG++F YE E GE Sbjct: 353 FPAAWVPDLLIERKEDPNAMWSFFSPKRFPELHELYGEDFVKRYEELEAA---GEYDF-- 407 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 ++ A+ +WR +LT LFETGHPWIT+KD CN R+PQQH GV+H SNLCTEITLN+S +ETA Sbjct: 408 QLPAIQVWRHLLTNLFETGHPWITYKDECNRRNPQQHAGVIHHSNLCTEITLNTSKDETA 467 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNLGSIN L+ + ++L IR A+R LD+VID+N + ++A SN HR IGL Sbjct: 468 VCNLGSIN-LSQVMSAPNPLERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGL 526 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+MG+ L + + S E ++ AD E IS+ AI AS +LAQERG+Y SF+GS W + Sbjct: 527 GVMGYYEWLVKQGVDFESEEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSK 586 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ PID+ L+ + + R R W+ L+++VK GMRNSN MAIAPTATI+NI G Sbjct: 587 GILPIDNAKLMEDGKPFFDQPR--RFDWEALREKVKK-GMRNSNVMAIAPTATISNIAGT 643 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 +Q +P + Y KSN+ G + VV+ + A + D KYH Sbjct: 644 TQCTEPPFLLEYFKSNLGGTYQVVDPAI------------AHVGD-KYH----------- 679 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897 + ++ +D +++I++A+ RQKWIDQ+QS NL+ + +G+ LD Y A +GL Sbjct: 680 -----LLKESYYVDQLYIIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGL 734 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 KTTYYLR++S S V +L + + T S P C+ D +CE CQ Sbjct: 735 KTTYYLRNQSDAEKSASMRTKVIAELANAALGKLSEPTES--APKMCSILDPDCESCQ 790 >gi|225873705|ref|YP_002755164.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225791715|gb|ACO31805.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 792 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 348/821 (42%), Positives = 490/821 (59%), Gaps = 59/821 (7%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P + + +G L + ++ V+ +GL V + V S+T +YDG + +L+ Sbjct: 22 PVMHVRKRNGELEPVDVNKIVRAVQRCSAGLSQVDAIRVASKTIGGLYDGATTRELDAIS 81 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++ +LI +EP Y+K+ AR LL + +EV Q L+ F + IE Sbjct: 82 IDTAASLIAEEPQYSKLAARLLLGTILKEVAG--------------QNLHS--FSQSIEY 125 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA----FEYLGLQILYDRYFLHINGSR--IEM 316 + +++ + +F + A L Y D FE+ GL+ +YDRY L SR IE Sbjct: 126 AHQEGVVNAATAEFVRTH-ARKLNYAIDEQLSDRFEFFGLRTVYDRYLLRDPLSRKVIET 184 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FF+RVA GLA E A+EFY L++S +M S+PTLFNSGT+HPQ+SSC+L Sbjct: 185 PQYFFLRVACGLAGTPHE----AIEFYRLIASHDYMPSSPTLFNSGTKHPQMSSCYLHDS 240 Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 P D L I+ ++ A+L+K+SGG+G + VR G+ I TNG S G++P+L+ + + Sbjct: 241 PSDSLESIYDTYKDVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSSV 300 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AVNQGGKRKGA C YLE WH DVE+FL+LR+NTGD RRT+++N ANWIPDLFM+RV + Sbjct: 301 AAVNQGGKRKGACCVYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFMRRVEE 360 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W+LF P V L DLYG EF+ AYE E E R+I A L+ +M+ L E Sbjct: 361 DGMWSLFDPKVVPQLPDLYGVEFDAAYEKAE-----AEQLYARQIKARDLYARMMRSLAE 415 Query: 556 TGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG+ W+TFKD CN++ Q + VVH SNLCTEIT +S +ETAVCNLGSINL H AN Sbjct: 416 TGNGWMTFKDACNLKCNQTGKPGNVVHLSNLCTEITEVTSRDETAVCNLGSINLARHVAN 475 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 FD++KLA T+R AV +LD VIDIN + + +A +N R +GLGLMG Q L +P Sbjct: 476 GAFDFEKLAETVRVAVPMLDRVIDINYYPVHQAASANSRWRPVGLGLMGLQDVFFQLRMP 535 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + SPEA +++ E I +HA++AS ELA+++GA+ +F + G D G+ + Sbjct: 536 FDSPEAQQLSTHIQEEIYYHALAASCELAEKQGAHPAFAETRLAAGQLQFDLWGV--KPA 593 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 DE W+ L+ R++ G+RNS +AIAPTATIA+I G + +P NL+ + Sbjct: 594 DEAR--------WNTLRARIQQHGVRNSLLIAIAPTATIASIVGCYECTEPQVSNLFKRE 645 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F VN +LV +LK+R LW+E + LK +GS+ I+ IPDDLK+I+ T +E+ Sbjct: 646 TLSGEFLQVNRYLVTDLKERGLWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTVWELPM 705 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 +I+ A R +IDQ+QSLNL+ + P+ +L +Y AW GLKTTYYLRSR AT + K Sbjct: 706 RAIIDLARERSPFIDQSQSLNLFAESPNIGRLSSMYMYAWKSGLKTTYYLRSRPATRIAK 765 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +T+ AV SL P S CE CQ Sbjct: 766 TTVASAKNATAAVAC--------SLENPGS------CEACQ 792 >gi|221633389|ref|YP_002522614.1| ribonucleoside-diphosphate reductase subunit alpha [Thermomicrobium roseum DSM 5159] gi|221155945|gb|ACM05072.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermomicrobium roseum DSM 5159] Length = 770 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 323/760 (42%), Positives = 444/760 (58%), Gaps = 23/760 (3%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I S + P + A LLEK+ RE YPE+F R++E Sbjct: 26 ILSCLQQLPDRPEAEREAAALLLEKIARE------------ADDGTPLPYPEHFRRFVER 73 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320 G+ L + F L LA L RD Y L L DRY + +R +E PQA Sbjct: 74 GIARGALDPRLRTFQLDVLARALDPARDALLGYAALATLADRYLVRDPETRQLLERPQAL 133 Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FMRVAMGLAL E + + A+ +Y+L+SS ++ STPTLFN+GT H QL+SC+L V D Sbjct: 134 FMRVAMGLALVEPPETRTSWALRWYDLMSSLRYLPSTPTLFNAGTPHHQLASCYLAEVED 193 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+ E MLAKY+GG+G T +R GA + G NG S G+IPFL + + ++ Sbjct: 194 SLESILGSAYEFGMLAKYAGGIGTAVTRIRATGAPVRGINGTSGGLIPFLHLYDALIASI 253 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG+R+G +C YLE WH++VE FLDLR+N GD RRTH +NTA WIPD F++RV + Sbjct: 254 SQGGRRRGTMCVYLEPWHLEVEAFLDLRRNAGDPYRRTHQLNTALWIPDEFLRRVETDDL 313 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFET 556 W LF P +L DL G F Y RQA+ G + + +R++ A LW +L L ET Sbjct: 314 WYLFDPIVAPELPDLVGAAFSERYRELCRQAEAGMLPRRAWRRLPARELWLAILASLMET 373 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQ 615 GHPW+TFKD N+RS + +GV+HSSNLCTEI L +S +E AVCNLGS+NL H + Sbjct: 374 GHPWLTFKDAGNLRSQLRGIGVIHSSNLCTEIFLPTSRDEVAVCNLGSVNLARHCTPTGE 433 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+++LA+T+R A+R LDNVID N + E+A ++N +R +GLGLMGF L + YA Sbjct: 434 LDWEQLAATVRLAMRALDNVIDANLYPSERAARANQLNRPVGLGLMGFAELLARRAVSYA 493 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734 P A ++AD+ EF+S+HAISAS LA+ERGA+ +F S W GV PID++ LA R Sbjct: 494 EPAAADLADQIAEFLSYHAISASCALAEERGAFPNFAFSRWAAGVLPIDTLDELAADRGL 553 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + ++RT RL W+ L++RV+ GMRN MA+APTATIA + G + S+DP Y N++ + Sbjct: 554 PVEVDRTRRLDWEPLRQRVRR-GMRNGAVMAVAPTATIALLAGTTPSLDPYYANVFSRQT 612 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG F VN LV EL++R LW++ ++ L G + + P DL TA+++ Sbjct: 613 LSGKFLEVNPILVEELRRRGLWEQ-LLPGLVAARGDLRAVPGCPPDLVARFPTAYQVPAE 671 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 IE A+R QKW+D S NLY ++ +Y AW GLK+TYY R +E+S Sbjct: 672 SYIEVAARVQKWVDMGVSRNLYHAADRPGQMSAVYLAAWRKGLKSTYYCFVRPRMEIEQS 731 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 T+ + V + +SC D CE CQ Sbjct: 732 TVAVNKARRRPQWVQLAEREVLA-SDAASCRLDGSCESCQ 770 >gi|42523461|ref|NP_968841.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio bacteriovorus HD100] gi|39575667|emb|CAE79834.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio bacteriovorus HD100] Length = 801 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 334/829 (40%), Positives = 494/829 (59%), Gaps = 55/829 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ DGTL + ++ V + C GL V V ++ +YDG S +L+ I Sbjct: 9 MRVKKRDGTLEPVDVTKIVERVTKNCQGLTQVDPLRVATKAISGLYDGASTKELDNLCIQ 68 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI ++P Y+++ AR L + EV + QK + F + G Sbjct: 69 TASLLIGEDPEYSRLAARLLSTYIDEEV------RSQKI----------QSFADSVSFGY 112 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319 +A LL E F + L ++ R FEY GL+ +YDRY L +R E PQ Sbjct: 113 QAGLLAEHTYKFVETNKAALCAAIEPYRTDRFEYFGLRTVYDRYLLKNPTTRQVFETPQY 172 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 FFMRVA GLA + + A+EFY L+SS +M STPTLFNSGT PQ+SSC+L P D Sbjct: 173 FFMRVACGLA----QSVEEAIEFYRLISSHDYMPSTPTLFNSGTMRPQMSSCYLLDSPSD 228 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL I+ + A+L+K++GG+G ++ VR G+ I GTNG S G+IP+LK + + AV Sbjct: 229 DLSAIYQKYTDIALLSKFAGGIGVAYSRVRSRGSLIKGTNGHSNGIIPWLKTMDSSVAAV 288 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGA C YLETWH D+EEFL+LR NTGD+ +R H++N ANW+PDLFMKRV +A Sbjct: 289 NQGGKRKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAM 348 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETG 557 W+LF P V D YG+EFE AY E E K++ +++ A L+ +M+ L +TG Sbjct: 349 WSLFDPKVVPHFVDTYGEEFEKAYVEAE------EKKLYIKQLKARDLYSRMMKTLAQTG 402 Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 + W+TFKD N+++ Q + V+H SNLCTEI +S +ETAVCNLGS+NL H N Q Sbjct: 403 NGWMTFKDHANLKANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLARHVENGQ 462 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F+++KLA ++RTAV+ LD V+DIN + I A+ SNH R +GLG+MG Q AL L+ +P+ Sbjct: 463 FNFEKLARSVRTAVKYLDRVVDINFYPIPTAQDSNHKWRPVGLGVMGLQDALFLMKLPFD 522 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S A +++ + E I ++A+ S EL+++ G + +F+ + +G+ D G+ + Sbjct: 523 SAAARDLSAKVQEEIYYNALVTSCELSEKHGPHGAFEQTKAAKGLLQYDLWGVTPSQPER 582 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 +++LK+++K G+RNS +AIAPTATIA+I G ++I+P NL+ + + Sbjct: 583 ----------FEKLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLFKRETL 632 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F +N +LV++LK +W E + +++K DGSI ++ IP +K+++ T +EI Sbjct: 633 SGEFMQINKYLVSDLKAMGIWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWEIPMKS 692 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 L++ A+ R +IDQAQSLNL+ + P+ KL +Y AW G+KTTYYLRSR AT + K+T Sbjct: 693 LVDMAADRGAYIDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKTTYYLRSRPATKIAKTT 752 Query: 916 LKGVDGKLN---------AVPVTDPNSS-THSLGIPSSCTSDTECEVCQ 954 +K N A P + S + + I S + CE CQ Sbjct: 753 VKASSNSANPTASESMMDAAPAQEAKKSYSDAEVIACSLENPEACEACQ 801 >gi|320107275|ref|YP_004182865.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus saanensis SP1PR4] gi|319925796|gb|ADV82871.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus saanensis SP1PR4] Length = 815 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 334/782 (42%), Positives = 479/782 (61%), Gaps = 42/782 (5%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P + + +G L + ++ V+ GL V + + S+T +YDG + +L++ Sbjct: 29 PTMGVRKRNGALEPVDVNKIVRAVQRNAHGLGQVDAIRIASKTIGGLYDGATTRELDSIS 88 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++ +LI +EP Y+K+ AR LL + +EV+ + H Q + Y +E Sbjct: 89 IDTAASLIAEEPQYSKLAARLLLGTIMKEVVG-------QNLHSFSQSISYGY-----QE 136 Query: 263 GVKARLLHESMMDF--DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 GV ++ E + L + ND +R FEY GL+ +YDRY L SR IE PQ Sbjct: 137 GVVSKATAEFVQTHMRKLNHAINDELSDR---FEYFGLRTVYDRYLLRDPISRKVIETPQ 193 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 FF+RVA GLA E A+EFYNL++S +M S+PTLFNSGT+H Q+SSC+L P Sbjct: 194 HFFLRVACGLAGTPHE----AIEFYNLIASHDYMPSSPTLFNSGTKHAQMSSCYLHDSPL 249 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I+ + A+L+K+SGG+G + VR G+ I TNG S G++P+L+ + + A Sbjct: 250 DSLDSIYDTYKNVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSSVAA 309 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGA C YLE WH D+E FL+LR+NTGD RRT+++N ANWIPDLFM+RV ++ Sbjct: 310 VNQGGKRKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMQRVDEDG 369 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P EV DLYGKEFE AY + + D+ K R+I A L+ +M+ L ETG Sbjct: 370 IWSLFDPKEVPTFPDLYGKEFEEAY--IQAETDK---KYHRQIKARDLYMRMMRSLAETG 424 Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NN 614 + W+TFKD CNI++ Q + VVH SNLCTEIT +S +ETAVCNLGS+NL H Sbjct: 425 NGWMTFKDACNIKNNQTGKPGNVVHLSNLCTEITEVTSKDETAVCNLGSVNLARHVTPEG 484 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +FD++KLA+T+R AV +LD VIDIN + + +A +N R +GLG+MG Q + IP+ Sbjct: 485 KFDFEKLANTVRIAVPMLDRVIDINYYPVPQAASANARWRPVGLGVMGLQDVFFQMRIPF 544 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPEA+ I+ + E I ++A+ ASVELA+ G + SF + +G F D + + Sbjct: 545 DSPEALAISTKIQEEIYYYAVLASVELAEREGKHPSFDETRLAKGEFQFDLWNVKPADPE 604 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 WD L++R+ G+RNS +AIAPTATIA+I G + I+P NL+ + Sbjct: 605 R----------WDALRQRILKSGIRNSLLIAIAPTATIASIVGCYECIEPQISNLFKRET 654 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VN +L+ ELKQR +W E M +K +GS+ +E +P+DL+ ++ T +E+ Sbjct: 655 LSGEFLQVNRYLIEELKQRGMWTEEMRVRMKMSEGSVQAMEDLPEDLRAVYRTVWEVPMR 714 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 LI+ A R +IDQ+QSLNL+ + P+ +L +Y AW GLKTTYYLRSR AT + K+ Sbjct: 715 SLIDMARDRNAFIDQSQSLNLFAESPNIGRLSSMYMHAWKSGLKTTYYLRSRPATKISKT 774 Query: 915 TL 916 T+ Sbjct: 775 TV 776 >gi|194363984|ref|YP_002026594.1| ribonucleoside-diphosphate reductase subunit alpha [Stenotrophomonas maltophilia R551-3] gi|194346788|gb|ACF49911.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas maltophilia R551-3] Length = 803 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 339/826 (41%), Positives = 475/826 (57%), Gaps = 54/826 (6%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 P A + + +GT + ++ V+ + GL V V + T +Y+G + +L+ Sbjct: 21 PTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELD 80 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 I ++ LI +EP Y ++ AR L + +EV Q +Y F + Sbjct: 81 ELSIRTAALLIGEEPEYGRLAARLLANYIAKEV--------------SGQEIYA--FSQS 124 Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314 + G + L+++ +++F + L + + D F+Y GL+ LYDRY L +R I Sbjct: 125 VGRGHEVGLINDRLLNFVQTNARKLNDAIDMSLDLNFDYFGLRTLYDRYLLRHPHTRKVI 184 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FF+R+A L +E A+ Y + + ++ S+PTLFNSGT H QLSSCFL Sbjct: 185 ETPQQFFLRIASAL----SEDVPEALALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLL 240 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 P D L I+ + A L+K+SGG+G +T VR G+ I TNG S G++P+LK + Sbjct: 241 DSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDS 300 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR H++N ANWIPDLFMKRV Sbjct: 301 SVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDESRRAHNLNLANWIPDLFMKRV 360 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W+LF P V + DL+G+ FE AY E Q K R ISA L+ +M+ L Sbjct: 361 EADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQG-----KANRTISARKLYSRMMRTL 415 Query: 554 FETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG+ W+TFKD CN S Q + V+H SNLCTEI +S+EETAVCNLGSINL HF Sbjct: 416 AETGNGWMTFKDKCNRASNQTLRAGNVIHLSNLCTEILEVTSAEETAVCNLGSINLGNHF 475 Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +FD+DKLA T+R AVR LD VID+N + IE A++ N R +GLG MG Q Sbjct: 476 DGNGEFDFDKLADTVRLAVRQLDRVIDLNFYPIESARRGNLRWRPVGLGCMGLQDVFFRK 535 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +P+ EA ++ + E I FHA+ SVELAQERG + SF + G D+ ++ Sbjct: 536 RLPFDGAEARALSKKIAETIYFHALETSVELAQERGKHPSFADTRAASGELQFDAWNVVP 595 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E + WD L++R+K G+RNS +AIAPTATIA+I G + ++P NL+ Sbjct: 596 EDAER----------WDSLRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SGDF VN +LVNELK+ W M +K +GSI I +IP+ L+ ++ TA+E Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGHWTPEMRDAIKLAEGSIQGITQIPETLRHVYRTAWE 705 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + LI+ A+ R +IDQ+ SLNL+++ P+ + +Y AW G+KTTYYLRSR AT Sbjct: 706 LPMRSLIDMAADRGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATK 765 Query: 911 VEKSTLKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + K+T+ G A P V P + I S + CE CQ Sbjct: 766 IAKTTVSHAAG---AAPEKVFSPEEA-----IACSLENPEACEACQ 803 >gi|254521985|ref|ZP_05134040.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] gi|219719576|gb|EED38101.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] Length = 800 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 336/826 (40%), Positives = 480/826 (58%), Gaps = 57/826 (6%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 P A + + +GT + ++ V+ + GL V V + T +Y+G + +L+ Sbjct: 21 PTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELD 80 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 I ++ LI +EP Y ++ AR L + +EV Q +Y F + Sbjct: 81 ELSIRTAALLIGEEPEYGRLAARLLANYIAKEV--------------SGQEIYA--FSQS 124 Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314 + G + L+++ +++F + L + + D F+Y GL+ LYDRY L +R I Sbjct: 125 VSRGHEVGLINDRLLNFVQTNARKLNDAIDGALDLNFDYFGLRTLYDRYLLRHPHTRKVI 184 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FF+R+A L +E + Y + + ++ S+PTLFNSGT H QLSSCFL Sbjct: 185 ETPQQFFLRIASAL----SEDVSETLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLL 240 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 P D L I+ + A L+K+SGG+G +T VR G+ I TNG S G++P+LK + Sbjct: 241 DSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDS 300 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR H++N ANW+PDLFMKRV Sbjct: 301 SVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRV 360 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W+LF P V + DL+G+ FE AY E Q K R ISA L+ +M+ L Sbjct: 361 EADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQG-----KANRTISARKLYARMMRTL 415 Query: 554 FETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG+ W+TFKD CN S Q + V+H SNLCTEI +S++ETAVCNLGSINL HF Sbjct: 416 AETGNGWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHF 475 Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +N+FD++KLA T+R AVR LD VID+N + IE A+++N R +GLG MG Q Sbjct: 476 DEHNEFDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRK 535 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +P+ S EA ++ + E I FHA+ S ELAQERG + SF + G D+ ++ Sbjct: 536 RLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVP 595 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E T+R WD L++R+K G+RNS +AIAPTATIA+I G + ++P NL+ Sbjct: 596 E--------DTAR--WDALRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SGDF VN +LVNELK+ LW M +K +GSI + +IP+ L++++ TA+E Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + LI+ A+ R +IDQ+ SLNL+++ P+ + +Y AW G+KTTYYLRSR AT Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATK 765 Query: 911 VEKSTLKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + K+T+ A P V P+ + I S + CE CQ Sbjct: 766 IAKTTVS------TAAPAKVFSPDEA-----IACSLENPEACEACQ 800 >gi|313903042|ref|ZP_07836437.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermaerobacter subterraneus DSM 13965] gi|313466766|gb|EFR62285.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermaerobacter subterraneus DSM 13965] Length = 930 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/728 (42%), Positives = 449/728 (61%), Gaps = 22/728 (3%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 LE L+ ++ + ++P + +V R L +L R+VL P++ Y F Sbjct: 83 LEELLVQAATQNLHRDPEFERVAVRARLRQLYRQVLGEPVPGPER---------YRAAFP 133 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 YI GV L E ++ FDL LA L+ ERD + ++GL L DRY + SR +E Sbjct: 134 AYIRRGVACGALDERLLAFDLDELAGALRPERDESLPFIGLVTLADRYLVREPESRRLLE 193 Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 PQ FMRVAMGLAL E E +R A+ FY +S+F ++ STPTLFN+GT H QLSSC+ Sbjct: 194 TPQYLFMRVAMGLALAE-EPARRVHWALRFYEFMSTFRYLPSTPTLFNAGTPHHQLSSCY 252 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L V D + I A + LAKY+GG+G T +R G+ + G NG+S GVIPF+ + Sbjct: 253 LADVHDSMDHILEAAGDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFIHYYD 312 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 AVNQGG+R+G + YLE WH+++E FLDL++N+GD R H +NTA WIPD F++R Sbjct: 313 ALIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRR 372 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKML 550 V W LF P V +L + +G F AY RQA+ GE+ + ++++ A L+R++L Sbjct: 373 VEAGEPWYLFDPAYVPELPERFGAAFRDAYAARIRQAEAGELPARAWKRVDARQLFREIL 432 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 L ET HPW+ FKD N+RS GV+HSSNLCTEI L ++++E AVCNL S+NL H Sbjct: 433 ATLQETSHPWLVFKDAGNVRS--LLPGVIHSSNLCTEIFLPTTADEVAVCNLASVNLARH 490 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D++ LA+T+ A+R LDNVID+N + IEKA++SN HR +GLG+MGF A++ L Sbjct: 491 LGPAGIDWEALAATVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRL 550 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + YA PEA ++AD +EFIS+HAI AS LA ERG++ SF S W +G P+D++ L Sbjct: 551 GLGYADPEAADLADRVLEFISYHAILASHRLAGERGSFPSFAESGWARGKVPLDTLADLE 610 Query: 731 EVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 E R + ++R++RL W+ ++ RV+ GMRN +A+APTATI+ I G + S+DP Y N+ Sbjct: 611 EERGRPVTVDRSARLDWEGVRARVRQ-GMRNGAVLAVAPTATISLIAGTTPSLDPPYSNV 669 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + + +SG F VN LV EL+QR LW E + + G + I +P D++ + TA+ Sbjct: 670 FSRQTLSGKFLEVNRVLVEELRQRGLW-EQVRDRIVEERGDLQPIAELPADIRHRYPTAY 728 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 ++ P +E A+R QKW+D S NL+L + ++ +YR+AW GLK+TYYL Sbjct: 729 QVPPEAYLEIAARAQKWVDMGISRNLFLADRDLGAMERVYREAWRRGLKSTYYLFMAPRM 788 Query: 910 SVEKSTLK 917 E ST++ Sbjct: 789 YAEPSTVR 796 >gi|222834322|gb|EEE72799.1| predicted protein [Populus trichocarpa] Length = 403 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 273/403 (67%), Positives = 332/403 (82%), Gaps = 1/403 (0%) Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGG Sbjct: 1 IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 60 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLF Sbjct: 61 KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 120 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP +V DLHDL+G FE AY+ YE +AD GE+K+F++I A+ LWRKML+MLFETGHPW+T Sbjct: 121 SPSDVGDLHDLFGAAFEQAYKAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 180 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDPCN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NL H + D+ KL Sbjct: 181 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 240 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ AL+ + I YAS AVE Sbjct: 241 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 300 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741 AD+SME I ++A AS ELA+ERG YSS+KGSLWDQG+ P+D++ LL + R + ++R+ Sbjct: 301 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGGYVEVDRS 360 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 SRL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+P Sbjct: 361 SRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 403 >gi|190572322|ref|YP_001970167.1| putative ribonucleoside-diphosphate reductase large subunit [Stenotrophomonas maltophilia K279a] gi|190010244|emb|CAQ43852.1| putative ribonucleoside-diphosphate reductase large subunit [Stenotrophomonas maltophilia K279a] Length = 775 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 333/821 (40%), Positives = 477/821 (58%), Gaps = 57/821 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + +GT + ++ V+ + GL V V + T +Y+G + +L+ I Sbjct: 1 MSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELDELSIR 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y ++ AR L + +EV Q +Y F + + G Sbjct: 61 TAALLIGEEPEYGRLAARLLANYIAKEV--------------SGQEIYA--FSQSVSRGH 104 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319 + L+++ +++F + L + + D F+Y GL+ LYDRY L +R IE PQ Sbjct: 105 EVGLINDRLLNFVQTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQ 164 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FF+R+A L +E + Y + + ++ S+PTLFNSGT H QLSSCFL P D Sbjct: 165 FFLRIASAL----SEDVSETLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQD 220 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I+ + A L+K+SGG+G +T VR G+ I TNG S G++P+LK + + AV Sbjct: 221 SLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAV 280 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RR H++N ANW+PDLFMKRV + Sbjct: 281 NQGGKRKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQE 340 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LF P V + DL+G+ FE AY E Q K R ISA L+ +M+ L ETG+ Sbjct: 341 WSLFDPRVVPEFTDLFGEAFEAAYLQAEAQG-----KANRTISARKLYARMMRTLAETGN 395 Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQ 615 W+TFKD CN S Q + V+H SNLCTEI +S++ETAVCNLGSINL HF +N+ Sbjct: 396 GWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE 455 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD++KLA T+R AVR LD VID+N + IE A+++N R +GLG MG Q +P+ Sbjct: 456 FDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFD 515 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA ++ + E I FHA+ S ELAQERG + SF + G D+ ++ E Sbjct: 516 SAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE---- 571 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 T+R WD L+ R+K G+RNS +AIAPTATIA+I G + ++P NL+ + + Sbjct: 572 ----DTAR--WDALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETL 625 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SGDF VN +LVNELK+ LW M +K +GSI + +IP+ L++++ TA+E+ Sbjct: 626 SGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRS 685 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LI+ A+ R +IDQ+ SLNL+++ P+ + +Y AW G+KTTYYLRSR AT + K+T Sbjct: 686 LIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 745 Query: 916 LKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + A P V P+ + I S + CE CQ Sbjct: 746 VSA------AAPAKVFSPDEA-----IACSLENPEACEACQ 775 >gi|168702495|ref|ZP_02734772.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemmata obscuriglobus UQM 2246] Length = 797 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 331/827 (40%), Positives = 468/827 (56%), Gaps = 62/827 (7%) Query: 140 PIAPKL-KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 P +P L ++ G L N ++ V+ GL V V +T +YDG + ++L Sbjct: 21 PDSPSLMQVRKRSGALEDVNVNKIVRAVQRCSGGLPGVDPMRVAVKTIGGLYDGATTAEL 80 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + I ++ LI +EP Y+++ AR L + +EV + H F + Sbjct: 81 DRLSIQTAAGLISEEPEYSRLAARLLATYVDKEVA-------NQDVHS---------FSQ 124 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA------FEYLGLQILYDRYFLHINGS 312 I G + L+ M F AN K A FEY GL+ +YDRY L + Sbjct: 125 SIAAGYRHGLVAGGTMAF---VAANARKLNAAAAEPAPDLFEYFGLRTVYDRYLLRHPDT 181 Query: 313 R--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 R IE P FF+RVA GLA E A+E Y L+S+ ++ STPTLFNSGT PQ+SS Sbjct: 182 RHVIETPAFFFLRVACGLA----ESAADAIELYRLMSAHRYLPSTPTLFNSGTARPQMSS 237 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 C+L P D L I+ + A L+K++GG+G + +R G+ I GTNG S G++P+LK Sbjct: 238 CYLLDSPADALEAIYDRYADVAKLSKFAGGIGLAYHRIRSRGSLIRGTNGHSNGIVPWLK 297 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + AVNQGGKRKGA C YLETWH DVEEFL+LR NTGD RRT+++N ANW+PDLF Sbjct: 298 TLDSSVAAVNQGGKRKGACCVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLF 357 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+RV W+LF P V L DL+G F+ AY + E + + + A L+ +M Sbjct: 358 MRRVEAGEPWSLFDPKAVPHLTDLFGAAFDAAYTDAEAKG-----LAVKSVPARDLYARM 412 Query: 550 LTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 + L ETG+ W+TFKD CN Q + VVHSSNLCTEI +S+ ETAVCNLGS+NL Sbjct: 413 MKTLAETGNGWMTFKDACNRACNQTAEPGAVVHSSNLCTEIVEVTSAGETAVCNLGSVNL 472 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 H + FD+ LA T+RTAVR LD V+D+N + +A SN R +GLG+MG Q Sbjct: 473 ARHVTRDGFDFAALAETVRTAVRFLDRVVDVNFYPTPEAAASNARWRPVGLGVMGLQDVF 532 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L +P+ +P A E++ E I +HA++ S ELA RG + SF + GV D G Sbjct: 533 FKLKLPFDAPAARELSRRIQEEIYYHALATSCELAAARGPHPSFASTRAAAGVLQFDLWG 592 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + T W L++RV+T G+RNS +AIAPTATIA+I G + ++P Sbjct: 593 V----------EPTDPARWAALRERVRTTGLRNSLLVAIAPTATIASIVGAYECVEPQVS 642 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NL+ + +SG+F VN +LV++LK LW +A+ + +K DGS+ ++ +P L+ ++ T Sbjct: 643 NLFKRETLSGEFLQVNRYLVDDLKALGLWTDAVRTKIKLADGSVQSLSELPAGLRAVYRT 702 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 A+E+ LI+ A+ R +IDQ+QSLNL+L+ P+ K+ +Y AW GLKTTYYLRSR Sbjct: 703 AWEVPQRGLIDMAAERGPFIDQSQSLNLFLESPTIGKMSSMYMHAWKKGLKTTYYLRSRP 762 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 AT++ K+T+ P P ++ + S + CE CQ Sbjct: 763 ATAIAKTTV---------TPTAAPADTS---AVSCSLENPGACEACQ 797 >gi|317122810|ref|YP_004102813.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermaerobacter marianensis DSM 12885] gi|315592790|gb|ADU52086.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermaerobacter marianensis DSM 12885] Length = 855 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 311/727 (42%), Positives = 443/727 (60%), Gaps = 20/727 (2%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 LE L+ ++ + +EP +V R L +L R VL P Y F Sbjct: 74 LEELLVQAATQHLHREPRMERVAVRARLRQLYRCVLNDEAPSP---------AAYRAAFP 124 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 YI +GV L E ++ FDL LA L+ ERD ++GL L DRY + SR +E Sbjct: 125 AYIRKGVACGALDERLLAFDLDELAASLRPERDETLPFIGLVTLMDRYLVREPESRQWLE 184 Query: 316 MPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ FMRVAMGLAL E + A FY+ +S+F ++ STPTLFN+GT H QLSSC+L Sbjct: 185 TPQFLFMRVAMGLALAEEPGHRGAWARRFYHAMSTFRYLPSTPTLFNAGTPHHQLSSCYL 244 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + I A ++ LAKY+GG+G T +R G+ + G NG+S GVIPF+ + Sbjct: 245 ADVHDSMDHILDAARDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFVHFYDA 304 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 AVNQGG+R+G + YLE WH+++E FLDL++N+GD R H +NTA WIPD F++RV Sbjct: 305 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 364 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLT 551 W LF P V +L + G++F AY RQA+ G + + ++++ A L+R++L Sbjct: 365 EAGEPWYLFDPAYVPELPEKVGRDFAAAYAERIRQAEAGALPARAWKRVDARQLFREILA 424 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 L ET HPW+ FKD N+RS GV+HSSNLCTE+ L ++++E AVCNL S+NL H Sbjct: 425 TLQETSHPWLVFKDAGNLRS--LLPGVIHSSNLCTEVFLPTTADEVAVCNLASVNLARHL 482 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+D LA T+ A+R LDNVID+N + IEKA++SN HR +GLG+MGF A++ L Sbjct: 483 GPQGIDWDALAETVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 542 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG-LLA 730 YA PEA ++ D +EFIS+HAI AS LA+ERG++ +F S W QG PID++ L A Sbjct: 543 WGYADPEAADLVDRVLEFISYHAILASHRLAEERGSFPAFAESGWAQGRVPIDTLADLEA 602 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E + + ++RT+RL W+ ++ +V+ GMRN MAIAPTATI+ I G + S+DP Y N++ Sbjct: 603 ERGEPVTVDRTARLDWESVRAQVRR-GMRNGTVMAIAPTATISLIAGTTPSLDPPYANVF 661 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG F +N LV EL++R LW EA+ + G + I +P D++ + TA++ Sbjct: 662 SRQTLSGKFLEINRVLVEELERRGLW-EAVRDRIVEERGDLQPIAELPSDIRHRYPTAYQ 720 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + P +E A+R QKW+D S NL+L + ++ +Y +AW GLK+TYYL Sbjct: 721 VPPEAYLEVAARAQKWVDMGISRNLFLADRDLGTMERVYVEAWRRGLKSTYYLFMAPRMY 780 Query: 911 VEKSTLK 917 E ST++ Sbjct: 781 AEPSTVR 787 >gi|328950374|ref|YP_004367709.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus hydrothermalis DSM 14884] gi|328450698|gb|AEB11599.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus hydrothermalis DSM 14884] Length = 789 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 311/713 (43%), Positives = 427/713 (59%), Gaps = 16/713 (2%) Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 I EP +++ R LL RE L T P Y + F RY++ ++ L Sbjct: 51 IHLEPAASQIAVRVLLRHNYREALGTPTPSP---------AAYRQGFIRYVQNAIREGYL 101 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327 + D DL LA L+ ERD Y GL L DRY + ++G +E PQ FMRVAMG Sbjct: 102 DPRLGDLDLEALATTLRPERDAELPYAGLVALLDRYVVRDLVSGRVLETPQFLFMRVAMG 161 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E E FY +S + STPTLFN+GT HPQLSSC+L + D L I L Sbjct: 162 LALAEAEPLAWIPRFYEAISRRRVLPSTPTLFNAGTPHPQLSSCYLWVIEDSLDAILDGL 221 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 Q LAKY+GG+G T +R GA + G +G S GVIPFL V + AVNQGG+R+G Sbjct: 222 QTFGKLAKYAGGIGASLTKLRAKGAPVRGISGHSSGVIPFLNVYDALIQAVNQGGRRRGT 281 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 + AYLE WH++VE FLDLRKNTGD R +NTA ++PD FM+RV + W LF P Sbjct: 282 MAAYLEPWHLEVEAFLDLRKNTGDPYLRVRRLNTALFVPDEFMRRVERGEAWYLFDPQVA 341 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKD 565 DL + +G+ F+ AY Y + A+ G++ + ++K+ A L+R++L +L ET HPW+ FKD Sbjct: 342 PDLAETWGRAFDEAYARYIQAAEAGQLPPRSWKKLPARKLYREILAVLQETSHPWLVFKD 401 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 N RS VG+VHSSNLCTEI L +S EE AVCNL S+NL A+ + + LA + Sbjct: 402 AGNARSALAAVGMVHSSNLCTEIFLPTSQEEIAVCNLASLNLAAYLQRGRIQWRALAKSA 461 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A+R+LDNVID N + +A++SN +R +GLG+MGF L + Y PEA + D Sbjct: 462 HLAMRMLDNVIDQNLYPDPRAEQSNWNNRPVGLGIMGFSEVFSRLGLAYPDPEAYALTDR 521 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744 E++S+HAI AS LA+ERGA+ F + W QG P+D++ L +R + ++R +RL Sbjct: 522 ITEYVSYHAIQASALLARERGAFPRFPRTTWAQGRLPLDTLEDLERLRGAPVEVSREARL 581 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD L+ V+ GMRNS MAIAPTA+I+ I G + S+DP Y N++ ++N+SG F VN Sbjct: 582 DWDALRPLVQK-GMRNSTVMAIAPTASISLIAGTTPSLDPYYANVFSRNNLSGKFLEVNP 640 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 LV LK+ LW+E ++ G + IE IP+ L++ TA++I P IE A+R Q Sbjct: 641 VLVEALKRAGLWEEVRERIVE-ERGDLSEIEAIPEPLRRRFPTAYQIPPTAYIEHAARAQ 699 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 KW+D S NLYL E S + ++ +Y +AW GLK+TYYL E+ST++ Sbjct: 700 KWVDMGVSRNLYLQERSLEAMEAVYLEAWRKGLKSTYYLYVAPRMYAEQSTVR 752 >gi|117928931|ref|YP_873482.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus cellulolyticus 11B] gi|117649394|gb|ABK53496.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus cellulolyticus 11B] Length = 781 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 327/823 (39%), Positives = 476/823 (57%), Gaps = 55/823 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G + ++ VE L DV V ++T +YDG + ++L+ I Sbjct: 1 MRVRKRNGDTEPVDVNKIVRAVERWADDLTDVDPLRVATKTISGLYDGATTAELDRLSIQ 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y+K+ AR L + +EV H++ + + EG+ Sbjct: 61 TAAELIAEEPQYSKLAARLLAAYIEKEV------------HNQGIASFSQSIALGHAEGL 108 Query: 265 ----KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 AR + ++ FD + + D FEY GL+ +YDRY L SR IE PQ Sbjct: 109 IGDETARFVKDNARKFDFA-----IDPKGDQRFEYFGLRTVYDRYLLRHPTSRLVIETPQ 163 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 F +RVA GLA E A+EFY L+S ++ S+ TLFNSGTRHPQ+SSC+L P Sbjct: 164 YFLLRVACGLARTPAE----AIEFYRLMSELAYLPSSATLFNSGTRHPQMSSCYLVDSPR 219 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I+ + A L+K++GG+G ++ VR GA I GTNG S G++PFLK + + A Sbjct: 220 DELDSIYARYHQVARLSKFAGGIGIGFSRVRSRGALIRGTNGHSNGIVPFLKTLDASVAA 279 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRT+++N ANWIPD FM+RV + Sbjct: 280 VNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADE 339 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L PD+ +L DL+G +F+ AY E E + R++ A L+ KM+ L ETG Sbjct: 340 LWSLIDPDQAPELVDLWGADFDAAYRRAE-----AEGRYVRQVRARDLYAKMMRTLAETG 394 Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 + W+TFKD CN + Q + VVH SNLCTEI + +E AVCNLGSINL H + Sbjct: 395 NGWMTFKDACNAKCNQTGRPGNVVHLSNLCTEIVEVNRDDEIAVCNLGSINLARHVRDGA 454 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+D+L T++ AV +LD V+DIN + +A +SN R IGLG+MG Q L +P+ Sbjct: 455 VDWDRLRRTVQIAVPLLDRVVDINFYPTPEAARSNEKWRPIGLGVMGLQDVFFALRLPFD 514 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA+E++ E I A+ S ELA E G + +F + G D G+ ++ Sbjct: 515 SGEALELSTRIAEEIYLTALEVSAELAAEYGPHPAFPETRAAAGYLQPDLWGVTPTQQER 574 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A +K+R+ +G+RNS +AIAPTATIA+I G +SI+P NL+ + + Sbjct: 575 YAA----------IKERIAAVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRETL 624 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VN+ LVNELK R LW + + +K DGS+ + +P++++++ TA+E+ Sbjct: 625 SGEFLQVNTALVNELKTRGLWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQKA 684 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LI+ A+ R +IDQ+QSLNL++ P+ KL +YR AW GLKTTYYLRSR AT ++++T Sbjct: 685 LIDLAAARGPYIDQSQSLNLFMAAPTISKLSSMYRYAWASGLKTTYYLRSRPATRIQQAT 744 Query: 916 LKGVDG----KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + A P T +++ SL P + CEVCQ Sbjct: 745 VTVTSSDDVRDVMANPSTSKPATSCSLENPET------CEVCQ 781 >gi|148273613|ref|YP_001223174.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831543|emb|CAN02510.1| putative ribonucleoside-diphosphate reductase alpha subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 834 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 311/778 (39%), Positives = 468/778 (60%), Gaps = 13/778 (1%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202 + ++ DGT +++ R+ + +E+A GL + + + SE ++DG++ L+ A+ Sbjct: 3 ITVVKRDGTREPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEAV 62 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I + ++ +P + V AR LL+ + + VL Y P+ E++ L+ E+F R I+ Sbjct: 63 IQVALQNVKDDPAFDTVAARLLLKTIYKRVLGD-YSSPE-----ELKRLHAEHFARNIQR 116 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 GV LL ++ FDL LA L+ D +Y+G+ L +RY + NG +E+PQ F Sbjct: 117 GVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYF 176 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +MR+AMGL L E + A+ FY +S ++ + TL N+GT +PQL++CF+ + DD+ Sbjct: 177 WMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDI 236 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I ++ L K +GG+G + +R G+ I N S G IPF+ + AV++ Sbjct: 237 EHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSR 296 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGK+ GA+C Y+E WH+D EFLDLR+N+GD RRT NTA WI D FMKRV + W Sbjct: 297 GGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDDDWF 356 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P EVSDL++LYGK F Y Y +A+ G I++F++I A ++ +L L T HPW Sbjct: 357 LFDPLEVSDLNELYGKAFSERYAFYVAEAEAGRIRMFKRIKAREQFKSILISLQTTSHPW 416 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 +T+KD N R+ + G +H SNLCTEITL + +VCNL SINL HFA+ + D+ K Sbjct: 417 LTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFAK 476 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 + + R AVR LDN+IDI ++++A SN +RA+GLG+MGF + L Y S E+ Sbjct: 477 IEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGYSYESEESY 536 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739 ++ DE ME +S+ AI S +LA+ERGAY +F+GS W +G+ P+DSI L+ R + +N Sbjct: 537 DLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKVN 596 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 RT+RL WD L+ +VK GMRN+ MAIAPTA+I + G + +DP + ++ +S SG F Sbjct: 597 RTTRLDWDALRAKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKF 655 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VN LV +L++ +W E + ++ G I NI IPD +K + T+F++ P +E Sbjct: 656 LEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLEV 714 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 A+R QKWIDQA S N+YL+ + IY W G+KTTYYL + + E+ST+K Sbjct: 715 AARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVK 772 >gi|170782701|ref|YP_001711035.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter michiganensis subsp. sepedonicus] gi|169157271|emb|CAQ02456.1| ribonucleoside-diphosphate reductase alpha subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 834 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 310/778 (39%), Positives = 469/778 (60%), Gaps = 13/778 (1%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202 + ++ DG+ +++ R+ + +E+A GL + + + SE ++DG++ L+ A+ Sbjct: 3 ITVVKRDGSKEPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEAV 62 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I + ++ +P + V AR LL+ + + VL Y P+ E++ L+ E+F R I+ Sbjct: 63 IQVALQNVKDDPAFDTVAARLLLKTIYKRVLGD-YSSPE-----ELKRLHAEHFARNIQR 116 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 GV LL ++ FDL LA L+ D +Y+G+ L +RY + NG +E+PQ F Sbjct: 117 GVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYF 176 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +MR+AMGL L E + A+ FY +S ++ + TL N+GT +PQL++CF+ + DD+ Sbjct: 177 WMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDI 236 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I ++ L K +GG+G + +R G+ I N S G IPF+ + AV++ Sbjct: 237 EHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSR 296 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGK+ GA+C Y+E WH+D EFLDLR+N+GD RRT NTA WI D FMKRV + W Sbjct: 297 GGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWY 356 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P EVSDL++LYGK F Y Y +A+ G I++F++I+A ++ +L L T HPW Sbjct: 357 LFDPLEVSDLNELYGKAFSERYAFYVGEAEAGRIRMFKRINAREQFKSILISLQTTSHPW 416 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 +T+KD N R+ + G +H SNLCTEITL + +VCNL SINL HFA+ + D+ K Sbjct: 417 LTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFAK 476 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 + + R AVR LDN+IDI ++++A SN +RA+GLG+MGF + L Y S E+ Sbjct: 477 IEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGFSYESEESY 536 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739 ++ DE ME +S+ AI S +LA+ERGAY +F+GS W +G+ P+DSI L+ R + +N Sbjct: 537 DLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKVN 596 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 RT+RL WD L+ +VK GMRN+ MAIAPTA+I + G + +DP + ++ +S SG F Sbjct: 597 RTTRLDWDALRAKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKF 655 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VN LV +L++ +W E + ++ G I NI IPD +K + T+F++ P +E Sbjct: 656 LEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLEV 714 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 A+R QKWIDQA S N+YL+ + IY W G+KTTYYL + + E+ST+K Sbjct: 715 AARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVK 772 >gi|162452148|ref|YP_001614515.1| ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce 56'] gi|161162730|emb|CAN94035.1| Ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce 56'] Length = 838 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 324/799 (40%), Positives = 472/799 (59%), Gaps = 48/799 (6%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 S + P +++ +G+ + ++ V +C+ L DV + V ++T +YDG Sbjct: 31 SAGAEETPPHTTMRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDALRVATKTISGLYDG 90 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + +L+ I ++ +LI EP YAK+ AR L + +EV + E+ Sbjct: 91 ATTRELDQLSIQTAASLIADEPQYAKLAARLLATYIDKEV-----------RNQEIHA-- 137 Query: 253 PEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 F + + G + L+++ + F + L + ++ RD EY GL+ LYDRY L Sbjct: 138 ---FSQSVAVGRRLGLINDRLHGFVAQNARKLNDAIEPARDHELEYFGLRTLYDRYLLKH 194 Query: 310 NGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 +R IE PQ FF+R+A L +E +AVE Y L SS ++ S+PT+FNSGT H Q Sbjct: 195 PETRLVIETPQQFFLRIACAL----SETAAQAVELYRLFSSLDYLPSSPTMFNSGTSHEQ 250 Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCFL PDD L I+ + AML+K+SGG+G + VR G+ I TNG S G++P Sbjct: 251 LSSCFLLDSPDDHLETIYQRYTDVAMLSKFSGGIGLAYHRVRSRGSLIRATNGHSSGIVP 310 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +LK + + AVNQGGKRKGA C YLE WH DVEEFL LR NTGD+ RTH++N A+W+P Sbjct: 311 WLKTLDASVAAVNQGGKRKGACCVYLEPWHADVEEFLSLRDNTGDEAARTHNLNLASWVP 370 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV + W+LF P + DL DLYG+EFE Y ER G K + + A L+ Sbjct: 371 DLFMKRVEADGDWSLFDPKDARDLPDLYGEEFERRYVEAERA---GLAK--KTMKARELY 425 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGS 604 +M+ L +TG+ W+TFKD N Q + +VH SNLCTEI +S+EE+AVCNLGS Sbjct: 426 ARMMRTLAQTGNGWMTFKDKSNRACNQTALPGRIVHLSNLCTEILEVTSNEESAVCNLGS 485 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 INL H A FD++KLA T+RTAVR LD VID+N + I ++SN R +GLG Sbjct: 486 INLARHTATLADGAVAFDFEKLARTVRTAVRQLDRVIDLNYYPIPSTRRSNLRWRPVGLG 545 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 LMG Q + +P+ +P A E++ E + +HA+S S +LA E+G + +F + +G Sbjct: 546 LMGLQDVFFQMRLPFDAPAARELSRRISEEVYYHALSTSADLAAEKGRHPAFDETRAARG 605 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D+ G + E W+ L+ RV+ G+RNS +AIAPTATIA+I G Sbjct: 606 ELQFDAWGAVPE----------DAARWEALRARVQAEGLRNSLLVAIAPTATIASIAGCY 655 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + I+P NL+ + +SGDF +N +LV ELK+ W++A+ + LK +GS+ ++ +P+ Sbjct: 656 ECIEPQVSNLFKRETLSGDFLQMNRYLVAELKRLGAWNDAVRARLKLAEGSVQGMDELPE 715 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 ++ + TA+EI LI+ A+ R +IDQ+QSLNL+++ P+ +L +Y AW GLKT Sbjct: 716 QIRAVFRTAWEIPMRSLIDMAADRGAFIDQSQSLNLFIENPTIGQLSSMYFHAWKKGLKT 775 Query: 900 TYYLRSRSATSVEKSTLKG 918 TYYLRSR AT + K+T++ Sbjct: 776 TYYLRSRPATRIAKATVEA 794 >gi|50955340|ref|YP_062628.1| ribonucleotide-diphosphate reductase subunit alpha [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951822|gb|AAT89523.1| ribonucleoside-diphosphate reductase, alpha chain [Leifsonia xyli subsp. xyli str. CTCB07] Length = 896 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 318/784 (40%), Positives = 462/784 (58%), Gaps = 14/784 (1%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202 + ++ +G +++ ++ + +E A +GL + + + + SE ++DG++ L+ A+ Sbjct: 62 ITVVKRNGEREPYDANKINLAIEHAAAGLDENITWVTQIASELELTLFDGITTQQLDEAV 121 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I + ++ +P + V AR LL+ + + VL Y + E+ L+ +F YIE Sbjct: 122 IQVALQNVKDDPAFDIVAARLLLKIIYKRVLGD-YASGTDGDNAELVELHARHFRGYIER 180 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 GV LL FDL LA L RD +Y+G+ L +RY + NG +E+PQ F Sbjct: 181 GVSETLLDSRFTGLFDLDRLAGHLDPSRDELLKYIGVVTLNNRYGIKARNGDSLEVPQYF 240 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +MR+AMGL+L ET+ A+ FY+ +S ++ + TL N+GT +PQLS+CF+ + DD+ Sbjct: 241 WMRIAMGLSLNETDPTSHAIAFYHKMSKLEYLAAGSTLVNAGTAYPQLSNCFVMEMQDDI 300 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I ++++ L K +GG+G T +R G+ I N S G IPF+ + AV++ Sbjct: 301 EHIAKSVRDVMWLTKGTGGIGLSVTKLRSQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSR 360 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGK+ GA+C Y+E WH+D EFLDLR+N+GD RRT NTA W D FMKRV + W Sbjct: 361 GGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWTSDEFMKRVQNDQDWY 420 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P EV+DL++LYGK F Y Y A+ GE+++F+KISA A ++ +L L T HPW Sbjct: 421 LFDPLEVADLNELYGKAFSERYAEYAVMAEAGELRMFKKISARAQFKDILMSLQTTSHPW 480 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------ 614 +T+KD N R+ + G +H SNLCTEITL + +VCNL SINL H + Sbjct: 481 LTWKDTINNRALNNNTGAIHLSNLCTEITLPQDRDNVSVCNLASINLSRHLVDGERANGL 540 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 + D+ +L + R AVR LDN+IDI ++ +A SN +RAIGLG+MGF + L Y Sbjct: 541 EMDWARLEESARQAVRQLDNLIDITVSSVPEADFSNQQNRAIGLGVMGFTDVVERLGFSY 600 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + DE ME +S+ AI S +LAQERGAY +F+GS W QG+ P DSI L R Sbjct: 601 ESEEAYALIDEIMEHVSYAAIDESADLAQERGAYPNFEGSRWSQGLVPYDSIALAEADRG 660 Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++RT RL WD L+++VK GMRN+ MAIAPTA+I + G + DP + ++ +S Sbjct: 661 IPITVDRTIRLDWDRLREKVKG-GMRNATLMAIAPTASIGLVAGTTPGFDPQFSQIFSRS 719 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 SG F VN LV L++R LW+E S L+ G I I IPD++K T+F++ P Sbjct: 720 TSSGKFLEVNRNLVEALQERGLWEETRESILRSQ-GDIQGIAAIPDEIKAAFKTSFQLSP 778 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 IE A+R QKWIDQA S N+YL+ + IY AW G+KTTYYL + E+ Sbjct: 779 HAFIEVAARAQKWIDQAISRNMYLETRDIGDMMDIYAAAWEKGVKTTYYLHMKPRHQAEQ 838 Query: 914 STLK 917 ST+K Sbjct: 839 STVK 842 >gi|28493650|ref|NP_787811.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma whipplei str. Twist] gi|28572843|ref|NP_789623.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma whipplei TW08/27] gi|28410976|emb|CAD67361.1| ribonucleotide-diphosphate reductase large chain [Tropheryma whipplei TW08/27] gi|28476692|gb|AAO44780.1| ribonucleotide reductase alpha chain [Tropheryma whipplei str. Twist] Length = 792 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 309/776 (39%), Positives = 470/776 (60%), Gaps = 11/776 (1%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L ++ DG ++S+++ +EEA SG D ++ + SE ++DG++ S L+ +LI Sbjct: 3 LTVVKRDGRKQQYDSRKVCAAIEEALSGSSDAITEQLSSELELTLFDGITTSQLDESLIQ 62 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + ++ +P Y +V R LL+ + R VL YK +++ L+ ++F +IE+GV Sbjct: 63 VALQNVKDDPVYDRVATRLLLKSIYRSVLGE-YKNC-----CQLRDLHVKHFRGFIEKGV 116 Query: 265 KARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + +L + FD L+ L +RD F+Y+GL L +RY + +G +E+PQ +M Sbjct: 117 EEGILDRRLDGRFDYDRLSRALDPQRDTLFKYIGLVTLNNRYGIRARSGKNLEVPQYLWM 176 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 R++MGL++ E + A++FY +S ++ + TL N+GT PQLS+CF+ + DD+ Sbjct: 177 RISMGLSVLEKDPTGSALKFYEKMSKLEYLAAGSTLVNAGTCTPQLSNCFVMEMQDDIEH 236 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I ++ +L K +GG+G T +R G+ I N +S G IPF+ + AV++GG Sbjct: 237 IAKTTRDVMLLTKGTGGIGLSVTKLRAQGSPIRSNNTRSTGPIPFMHTIDSVLRAVSRGG 296 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 K+ GA+C Y+E WH+D EF+DLR+N+GD RRT NTA WI D FMKRV + W LF Sbjct: 297 KKFGALCFYMENWHMDFPEFIDLRQNSGDPYRRTRTANTAVWISDEFMKRVINDREWYLF 356 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL++LYG EF YE Y QA+ G + +F+K+ A +R +L L T HPWIT Sbjct: 357 DPLETPDLNELYGAEFSKRYEYYVNQAEAGRLSMFKKLGAREQFRAILMSLQTTSHPWIT 416 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKD N+R+ + G +H SNLCTEI L E +VCNL SINL H + + D+ L Sbjct: 417 FKDTINLRALNNNTGTIHLSNLCTEICLPQDRENVSVCNLASINLSRHLIDGEIDWQLLE 476 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + R AVR LDN+IDI C +++++ SN+ +RAIGLG+MGF + + L Y S +A ++ Sbjct: 477 ESTRLAVRQLDNLIDITCSSVKESDNSNNLNRAIGLGIMGFTNLIERLGYSYESEQAFDL 536 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741 D ME ISF AI S LA+ERG Y +F GS W +G+ PIDSI ++++ R +++N + Sbjct: 537 IDRLMEQISFVAIDESCNLAEERGPYKNFHGSRWSKGMLPIDSIKIVSQNRGVPVSVNTS 596 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 RL WD L+KRV+ G+RN+ +AIAPTA+I + G + +DP + ++ +S G F Sbjct: 597 YRLDWDSLRKRVRN-GIRNATLLAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSFGKFLE 655 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN LV +LK+R LW E + D+ G+I I+ IP ++K + T+F++ P ++ A+ Sbjct: 656 VNENLVLDLKRRGLW-ERVREDILRSQGNIQQIDAIPGEIKANYKTSFQLSPYAFVQVAA 714 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 R QKW+DQA S N+YL+ + +Y AW MGLKTTYYL + E+ST+K Sbjct: 715 RAQKWVDQAISRNMYLESRDISDMVSVYTTAWEMGLKTTYYLHMKPRHQAEQSTVK 770 >gi|315094825|gb|EFT66801.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL060PA1] Length = 856 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 309/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ ++I DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRIRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|289427883|ref|ZP_06429587.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J165] gi|289158766|gb|EFD06966.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J165] gi|313808409|gb|EFS46876.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL087PA2] gi|313818170|gb|EFS55884.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL046PA2] gi|313821028|gb|EFS58742.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL036PA1] gi|313823900|gb|EFS61614.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL036PA2] gi|313827160|gb|EFS64874.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL063PA1] gi|314927053|gb|EFS90884.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL036PA3] gi|314961873|gb|EFT05974.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL002PA2] gi|314979602|gb|EFT23696.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL072PA2] gi|314988337|gb|EFT32428.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA2] gi|314990427|gb|EFT34518.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA3] gi|315082360|gb|EFT54336.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL078PA1] gi|315083810|gb|EFT55786.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL027PA2] gi|315089725|gb|EFT61701.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL072PA1] gi|327326612|gb|EGE68400.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL096PA3] gi|327449569|gb|EGE96223.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL013PA2] gi|332676501|gb|AEE73317.1| ribonucleoside-diphosphate reductase subunit alpha [Propionibacterium acnes 266] Length = 856 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 308/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|295131637|ref|YP_003582300.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK137] gi|291377353|gb|ADE01208.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK137] gi|313771781|gb|EFS37747.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL074PA1] gi|313810604|gb|EFS48318.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL083PA1] gi|313831645|gb|EFS69359.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL007PA1] gi|313834799|gb|EFS72513.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL056PA1] gi|314974995|gb|EFT19090.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL053PA1] gi|314977909|gb|EFT22003.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL045PA1] gi|314984683|gb|EFT28775.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA1] gi|315095600|gb|EFT67576.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL038PA1] gi|327332876|gb|EGE74608.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL096PA2] gi|327447703|gb|EGE94357.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL043PA2] gi|327448578|gb|EGE95232.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL043PA1] gi|328762001|gb|EGF75507.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL099PA1] Length = 856 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 308/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|50843559|ref|YP_056786.1| ribonucleotide-diphosphate reductase subunit alpha [Propionibacterium acnes KPA171202] gi|282854886|ref|ZP_06264220.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J139] gi|50841161|gb|AAT83828.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium acnes KPA171202] gi|282582032|gb|EFB87415.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J139] gi|314965891|gb|EFT09990.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL082PA2] gi|314981612|gb|EFT25705.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA3] gi|315092252|gb|EFT64228.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA4] gi|315104691|gb|EFT76667.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL050PA2] gi|315107753|gb|EFT79729.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL030PA1] gi|327328670|gb|EGE70430.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL103PA1] Length = 856 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 308/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|310823069|ref|YP_003955427.1| ribonucleoside-diphosphate reductase [Stigmatella aurantiaca DW4/3-1] gi|309396141|gb|ADO73600.1| Ribonucleoside-diphosphate reductase [Stigmatella aurantiaca DW4/3-1] Length = 841 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 319/786 (40%), Positives = 475/786 (60%), Gaps = 43/786 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G+ + ++ V C+GL V + V ++T +YDG + +L++ I Sbjct: 43 MRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSIQ 102 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP YA+++AR L +++EV ++ E+ F + + G Sbjct: 103 TAAALIVEEPEYARLSARLLDTFIQKEV-----------SNQEIHS-----FSQSVAAGH 146 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319 K L+ + ++ F + L + R+ FEY GL+ +YDRY L +R IE PQ Sbjct: 147 KHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQD 206 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 FF+RVA L T+ K A+E Y L SS ++ S+PTLFN+GTRH QLSSCFL P D Sbjct: 207 FFLRVACAL----TDTAKDAIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPSD 262 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + AML+K+SGG+G + VR G+ I TNG S G++P+LK + + AV Sbjct: 263 ELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAV 322 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV + Sbjct: 323 NQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQE 382 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LF P V L DLYG+ FE AY E Q RK+ A L+ +M+ L +TG+ Sbjct: 383 WSLFDPKTVPHLTDLYGEAFERAYAAAEAQG-----LAARKVKARDLYARMMKTLAQTGN 437 Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 W+TFKD N +S Q + V+H SNLCTEI +++ ETAVCNLGS+NL ++ +F Sbjct: 438 GWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGKF 497 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+++L ++ A+R LD VID+N + I A SN R +GLGLMG Q L +P+ + Sbjct: 498 DFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDA 557 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA ++ + E I F A++ S +LA++ G + +F + G D+ G++ E Sbjct: 558 PEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPE----- 612 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T+R W L++R++ G+RNS +AIAPTATIA+I G + I+P NL+ + +S Sbjct: 613 ---DTAR--WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLS 667 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDF VN +LV EL+ LW++AM S LK +GS+ ++ +P +LK I+ TA+E+ L Sbjct: 668 GDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSL 727 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 I+ A+ R +IDQ+QSLNL+++ P+ K+ +Y AW GLKTTYY+RSR AT + K+T+ Sbjct: 728 IDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTTV 787 Query: 917 KGVDGK 922 G+ Sbjct: 788 DTSHGQ 793 >gi|314924365|gb|EFS88196.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL001PA1] Length = 856 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 308/786 (39%), Positives = 463/786 (58%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNARDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|289426031|ref|ZP_06427778.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK187] gi|289153574|gb|EFD02288.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK187] gi|313763765|gb|EFS35129.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL013PA1] gi|313793688|gb|EFS41719.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA1] gi|313802999|gb|EFS44207.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA2] gi|313816917|gb|EFS54631.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL059PA1] gi|313829719|gb|EFS67433.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL063PA2] gi|313839373|gb|EFS77087.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL086PA1] gi|314916475|gb|EFS80306.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA4] gi|314918861|gb|EFS82692.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL050PA1] gi|314921070|gb|EFS84901.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL050PA3] gi|314932315|gb|EFS96146.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL067PA1] gi|314956589|gb|EFT00841.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL027PA1] gi|314959471|gb|EFT03573.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL002PA1] gi|314964863|gb|EFT08963.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL082PA1] gi|314968631|gb|EFT12729.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL037PA1] gi|315079175|gb|EFT51178.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL053PA2] gi|315100240|gb|EFT72216.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL059PA2] gi|315102564|gb|EFT74540.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL046PA1] gi|315109518|gb|EFT81494.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL030PA2] gi|327455889|gb|EGF02544.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL087PA3] gi|327456019|gb|EGF02674.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL092PA1] gi|327458041|gb|EGF04696.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL083PA2] gi|328757203|gb|EGF70819.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL087PA1] gi|328757584|gb|EGF71200.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL025PA2] Length = 856 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 307/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL ++ G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTEITGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|328757394|gb|EGF71010.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL020PA1] Length = 856 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 307/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S++L AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVDLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|115378662|ref|ZP_01465812.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|115364328|gb|EAU63413.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella aurantiaca DW4/3-1] Length = 800 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 319/786 (40%), Positives = 475/786 (60%), Gaps = 43/786 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G+ + ++ V C+GL V + V ++T +YDG + +L++ I Sbjct: 2 MRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSIQ 61 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP YA+++AR L +++EV ++ E+ F + + G Sbjct: 62 TAAALIVEEPEYARLSARLLDTFIQKEV-----------SNQEIHS-----FSQSVAAGH 105 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319 K L+ + ++ F + L + R+ FEY GL+ +YDRY L +R IE PQ Sbjct: 106 KHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQD 165 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 FF+RVA L T+ K A+E Y L SS ++ S+PTLFN+GTRH QLSSCFL P D Sbjct: 166 FFLRVACAL----TDTAKDAIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPSD 221 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + AML+K+SGG+G + VR G+ I TNG S G++P+LK + + AV Sbjct: 222 ELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAV 281 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV + Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQE 341 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LF P V L DLYG+ FE AY E Q RK+ A L+ +M+ L +TG+ Sbjct: 342 WSLFDPKTVPHLTDLYGEAFERAYAAAEAQG-----LAARKVKARDLYARMMKTLAQTGN 396 Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 W+TFKD N +S Q + V+H SNLCTEI +++ ETAVCNLGS+NL ++ +F Sbjct: 397 GWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGKF 456 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+++L ++ A+R LD VID+N + I A SN R +GLGLMG Q L +P+ + Sbjct: 457 DFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDA 516 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA ++ + E I F A++ S +LA++ G + +F + G D+ G++ E Sbjct: 517 PEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPE----- 571 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T+R W L++R++ G+RNS +AIAPTATIA+I G + I+P NL+ + +S Sbjct: 572 ---DTAR--WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLS 626 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDF VN +LV EL+ LW++AM S LK +GS+ ++ +P +LK I+ TA+E+ L Sbjct: 627 GDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSL 686 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 I+ A+ R +IDQ+QSLNL+++ P+ K+ +Y AW GLKTTYY+RSR AT + K+T+ Sbjct: 687 IDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTTV 746 Query: 917 KGVDGK 922 G+ Sbjct: 747 DTSHGQ 752 >gi|315087307|gb|EFT59283.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL002PA3] Length = 856 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 307/786 (39%), Positives = 463/786 (58%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RR +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRPRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|313813766|gb|EFS51480.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL025PA1] Length = 856 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 307/786 (39%), Positives = 463/786 (58%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL H A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLATHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|327335277|gb|EGE76987.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL097PA1] Length = 856 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 307/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123 Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 R I + V L E + DFDL LA L RD ++G++ + +RY L + +E Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH A Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++PM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LNPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|88856485|ref|ZP_01131143.1| ribonucleotide-diphosphate reductase alpha subunit [marine actinobacterium PHSC20C1] gi|88814352|gb|EAR24216.1| ribonucleotide-diphosphate reductase alpha subunit [marine actinobacterium PHSC20C1] Length = 813 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 310/779 (39%), Positives = 468/779 (60%), Gaps = 14/779 (1%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202 + ++ +GT +++ ++ + +E+A +GL D + + + SE ++DG++ L+ A+ Sbjct: 3 ITVVKRNGTREPYDANKINLAIEDAATGLDDNITWVTQIASELELTLFDGITTQQLDEAV 62 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I + ++ +P + V AR LL+ + + VL +++ L+ E+F + Sbjct: 63 IQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYTDAA------DLKKLHKEHFGPNVIR 116 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 GV+ LL + + FDL LA L+ D +Y+G+ L +RY + NG +E+PQ F Sbjct: 117 GVEEGLLDPRLTEMFDLDALAEHLEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYF 176 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +MR+AMGL+L E + A++FY +SS ++ + TL N+GT +PQL++CF+ + DD+ Sbjct: 177 WMRIAMGLSLNEANPNEAALKFYEKMSSLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDM 236 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I ++ L K +GG+G T +R G+ I N S G IPF+ + AV++ Sbjct: 237 EHIAKTTRDVMWLTKGTGGIGLSVTKLRAQGSPIRSNNTTSTGPIPFMHTIDSILRAVSR 296 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGK+ GA+C Y+E WH+D EFL+LR N+GD RRT NTA WI D FMKRV + W Sbjct: 297 GGKKFGALCFYMENWHMDFPEFLELRSNSGDPYRRTRTANTAVWISDEFMKRVQNDDSWY 356 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P EV+DL++LYGK F Y Y AD GE+ +F+KI A ++ +L L + HPW Sbjct: 357 LFDPLEVTDLNELYGKAFSKRYNEYVAMADAGEMHMFKKIGAREQFKSILISLQTSSHPW 416 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 +T+KD N R+ + G +H SNLCTEITL + +VCNL SINL H D+ Sbjct: 417 LTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSRHLLPEGGVDFA 476 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 K+ + R AVR LDN+IDI ++++A SN +RA+GLG+MGF + L Y S EA Sbjct: 477 KIEESARLAVRQLDNLIDITRSSVKEADFSNEQNRAVGLGVMGFTDIIEKLGFSYESEEA 536 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 ++ DE ME +S+ AI AS ELA+ERGAY++F+GS W +G+ P+DSI L E R E+ + Sbjct: 537 YDLIDEIMEHVSYAAIDASTELAKERGAYTNFEGSRWSEGLVPLDSIALTEEDRGMEIKV 596 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 NR +RL WD ++++VK GMRN+ MAIAPTA+I + G + +DP + ++ +S +G Sbjct: 597 NRKTRLDWDAMREKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSNGK 655 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VN LV L+Q LW++ + L+ G I N+E IPDD+K + T+F++ P +E Sbjct: 656 FLEVNRNLVETLQQHGLWEKNREAILRSQ-GDIQNVEGIPDDIKAVFKTSFQLSPYAFLE 714 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 A+R QKWIDQA S N+YL+ + IY AW G+KTTYYL + E+ST+K Sbjct: 715 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFDAWSRGVKTTYYLHMKPRHQAEQSTVK 773 >gi|108757444|ref|YP_633212.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus xanthus DK 1622] gi|108461324|gb|ABF86509.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus xanthus DK 1622] Length = 785 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 321/819 (39%), Positives = 479/819 (58%), Gaps = 43/819 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G + + ++ V +C GL V + V ++T +YDG + +L++ I Sbjct: 1 MRVRKRNGGTETVDLNKIVRAVGRSCVGLPRVDAMRVATKTISGLYDGATTRELDSLSIQ 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y +++AR L +++EV ++ ++ F + + G Sbjct: 61 TAAALIVEEPEYGRLSARLLATFIQKEV-----------SNQDIHS-----FSQSVAAGH 104 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319 K L+ + ++ F + L + R+ FEY GL+ +YDRY L +R +E PQ Sbjct: 105 KHGLIADRLLQFVQANARKLNAAIDPSRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQE 164 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 FF+RVA L+ + A+E Y L SS ++ S+PTLFNSGTRH QLSSCFL P D Sbjct: 165 FFLRVASALS---GDNVNEAIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPAD 221 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + AML+K+SGG+G + VR G+ I TNG S G++P+LK + + AV Sbjct: 222 ELDAIYKKYSDIAMLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAV 281 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGA C YLETWH D+E+FL+LR+NTGDD RRTH++N ANW+PDLFMKRV + Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGD 341 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LF P V DLYG FE AY E + RK+ A L+ +M+ L +TG+ Sbjct: 342 WSLFDPKSVPHFTDLYGDAFEQAYAKAE-----ADGLAMRKVKARDLYARMMKSLAQTGN 396 Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 W+TFKD N +S Q + V+H SNLCTEI +S ETAVCNLGS+NL + +F Sbjct: 397 GWMTFKDISNRKSNQTGKAGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRMLVDGKF 456 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+++L + + A+R LD VID+N + I A SN R +GLGLMG Q L + + S Sbjct: 457 DFERLRANAQLAMRQLDRVIDLNYYPIPTAASSNKRWRPVGLGLMGLQDVFFQLKLAFDS 516 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ + E I F A++ S ELA++ GA+ SF + +G D G++ E Sbjct: 517 AEARALSKKISEEIYFAALTTSCELAEQYGAHESFAETRAAKGELQFDHWGVVPE----- 571 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T+R WD L++R+ G+RNS +AIAPTATIA+I G + I+P NL+ + +S Sbjct: 572 ---DTAR--WDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLS 626 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDF VN +LV +L+ LW+E + + +K +GS+ +I +P++L+ ++ TA+E+ L Sbjct: 627 GDFLQVNRYLVRDLQALGLWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSL 686 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 ++ + R +IDQ+QSLNL+++ P+ KL +Y AW GLKTTYYLRSR AT + K+T+ Sbjct: 687 LDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATV 746 Query: 917 -KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G + +T + + S + CE CQ Sbjct: 747 GAGGGASVAQAAPAPVAKATEAEAVACSLENPEACEACQ 785 >gi|330467633|ref|YP_004405376.1| ribonucleoside-diphosphate reductase subunit alpha [Verrucosispora maris AB-18-032] gi|328810604|gb|AEB44776.1| ribonucleoside-diphosphate reductase, alpha subunit [Verrucosispora maris AB-18-032] Length = 791 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 322/815 (39%), Positives = 465/815 (57%), Gaps = 45/815 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G + ++ VE + L ++ V ++T +YDG + ++L+ I Sbjct: 17 MQVRKRNGDTEPVDVNKIVKAVERWVTDLDEIDPLRVATKTISGLYDGATTAELDKLSIQ 76 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y+++ AR L + +EV + Q+ Y + I + Sbjct: 77 TAAELIGEEPQYSRLAARLLAAFVDKEV------RGQQVASFSQSIRY-AHGLGLIGDAT 129 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322 A + + D V A DL+ FEY GL+ + DRY L +R +E PQ + + Sbjct: 130 AAFVARNARKLDDAVDPAGDLR------FEYFGLRTVADRYLLRHPQTRQVVETPQYWLL 183 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA GL+ E A+ FY L+SS ++ S+PTLFNSGTRH Q+SSCFL P D+L Sbjct: 184 RVACGLSQTPGE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELD 239 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ + A L+K+SGG+G WT VRG GA I GTNG+S G++PFLK + AVNQG Sbjct: 240 SIYERYHQVAKLSKFSGGIGISWTRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQG 299 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANWIPD FM+RV + W+L Sbjct: 300 GRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSL 359 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + +L DLYG+ F+ AY E+ K R + A L+ +M+ L +TG+ W+ Sbjct: 360 IDPSDAPELPDLYGEAFDEAYRAAEK-------KAVRTVKARDLYGRMMRTLAQTGNGWM 412 Query: 562 TFKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 TFKD N S Q +H SNLCTEI ++ ETAVCNLGSINL AH + D++ Sbjct: 413 TFKDAANRLSNQTGAPGNTIHLSNLCTEILEVNNDTETAVCNLGSINLAAHLTADGIDWE 472 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL +T+RTAV LD VIDIN + ++A SN R +GLGLMG Q A L +P+ S A Sbjct: 473 KLRATVRTAVLFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAFFTLRMPFDSTPA 532 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 E++ E I A+ S +LAQ+ G + ++ + +G D G + Sbjct: 533 RELSSRVQEEILLTALETSAQLAQQFGPHPAYDDTRAARGELHPDLWG----------AD 582 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W L++ + G+RNS +AIAPTATIA+I G + I+P NL+ + MSG+F Sbjct: 583 LTQAQRWAALRETIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEF 642 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +N++LV ELK R LW ++ +K +GS+ I +P+D++++ TA+E+ LI+ Sbjct: 643 LQINTYLVRELKARGLWTASIREQIKRAEGSVQGIAELPEDVRQLFRTAWELPQRALIDL 702 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+ R +IDQ+QSLNL++ P+ KL +Y AW GLKTTYYLRSR AT ++++T+ Sbjct: 703 AAARAPFIDQSQSLNLFISAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAVT 762 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V V D + SL P S CE CQ Sbjct: 763 PAAPAIVAVGDDEALACSLENPES------CEACQ 791 >gi|302867101|ref|YP_003835738.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora aurantiaca ATCC 27029] gi|302569960|gb|ADL46162.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora aurantiaca ATCC 27029] Length = 798 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 329/819 (40%), Positives = 466/819 (56%), Gaps = 47/819 (5%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P +++ DG + ++ VE + L +V V ++T +YDG + ++L+ Sbjct: 20 PAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRLS 79 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++ LI +EP Y+K+ AR L + +EV + Q Y +E Sbjct: 80 IQTAAELIGEEPQYSKLAARLLAAYVDKEV------RGQGVASFSQSIAYAHGLGLIGDE 133 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320 H +D D V DL+ FEY GL+ + DRY L SR +E PQ + Sbjct: 134 TAGFVARHARKLD-DAVDPDGDLR------FEYFGLRTVADRYLLRHPQSRLVVETPQYW 186 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379 +RVA GL+ E AV FY L+SS ++ S+PTLFNSGTRH Q+SSCFL P D+ Sbjct: 187 LLRVACGLSRTPGE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDE 242 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I+ + A L+K+SGG+G W+ VRG GA I GTNG+S G++PFLK + AVN Sbjct: 243 LDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVN 302 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV + W Sbjct: 303 QGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGEW 362 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + +L DLYG+ F+ AY E+ A R + A L+ +M+ L +TG+ Sbjct: 363 SLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGNG 415 Query: 560 WITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 W+TFKD N S Q + V+H SNLCTEI + ETAVCNLGS+NL AH + D Sbjct: 416 WMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGVD 475 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +++L +T+RTAV LD VIDIN + E+A SN R +GLGLMG Q A L +P+ S Sbjct: 476 WERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSA 535 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A E++ E I A+ S LA+ G + ++ + +G D G + Sbjct: 536 QAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGA-----EPAQ 590 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R W L++R+ G+RNS +AIAPTATIA+I G + ++P NL+ + MSG Sbjct: 591 AGR-----WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSG 645 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VN++LV ELK R LW + +K +GS+ +I +P ++++ TA+E+ LI Sbjct: 646 EFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALI 705 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + A+ R +IDQ+QSLNL+L P+ KL +Y AW GLKTTYYLRSR AT ++++T+ Sbjct: 706 DLAAARAPFIDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVA 765 Query: 918 GVDGKLNAV--PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V ++ V V+D + SL P S CE CQ Sbjct: 766 PVLAPVSGVVSAVSDDEALACSLENPES------CEACQ 798 >gi|315506489|ref|YP_004085376.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. L5] gi|315413108|gb|ADU11225.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. L5] Length = 798 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 327/819 (39%), Positives = 466/819 (56%), Gaps = 47/819 (5%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P +++ DG + ++ VE + L +V V ++T +YDG + ++L+ Sbjct: 20 PAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRLS 79 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++ LI +EP Y+K+ AR L + +EV + Q Y +E Sbjct: 80 IQTAAELIGEEPQYSKLAARLLAAYVDKEV------RGQGVASFSQSIAYAHGLGLIGDE 133 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320 H +D D V DL+ FEY GL+ + DRY L SR +E PQ + Sbjct: 134 TAAFVARHARKLD-DAVDPDGDLR------FEYFGLRTVADRYLLRHPQSRLVVETPQYW 186 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379 +RVA GL+ E AV FY L+SS ++ S+PTLFNSGTRH Q+SSCFL P D+ Sbjct: 187 LLRVACGLSRTPGE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDE 242 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I+ + A L+K+SGG+G W+ VRG GA I GTNG+S G++PFLK + AVN Sbjct: 243 LDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVN 302 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANW+PD FM+RV + W Sbjct: 303 QGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRRVEADGEW 362 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + +L DLYG+ F+ AY E+ A R + A L+ +M+ L +TG+ Sbjct: 363 SLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGNG 415 Query: 560 WITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 W+TFKD N S Q + V+H SNLCTEI + ETAVCNLGS+NL AH + D Sbjct: 416 WMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGVD 475 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +++L +T+RTAV LD VIDIN + E+A SN R +GLGLMG Q A L +P+ S Sbjct: 476 WERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSA 535 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A E++ E I A+ S LA+ G + ++ + +G D G + Sbjct: 536 QAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGA-----EPAQ 590 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R W L++R+ G+RNS +AIAPTATIA+I G + ++P NL+ + MSG Sbjct: 591 AGR-----WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSG 645 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VN++LV ELK R LW + +K +GS+ +I +P ++++ TA+E+ LI Sbjct: 646 EFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALI 705 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + A+ R ++DQ+QSLNL+L P+ KL +Y AW GLKTTYYLRSR AT ++++T+ Sbjct: 706 DLAAARAPFVDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVA 765 Query: 918 GVDGKLNAV--PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V ++ V V+D + SL P S CE CQ Sbjct: 766 PVLAPVSGVVSAVSDDEALACSLENPES------CEACQ 798 >gi|256825984|ref|YP_003149944.1| ribonucleoside-diphosphate reductase subunit alpha [Kytococcus sedentarius DSM 20547] gi|256689377|gb|ACV07179.1| ribonucleoside-diphosphate reductase, alpha subunit [Kytococcus sedentarius DSM 20547] Length = 875 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 332/848 (39%), Positives = 473/848 (55%), Gaps = 71/848 (8%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 P ++++ G + ++ VE C GL +V V ++T +YDG + ++L+ Sbjct: 31 PARTTMRVVKRSGEHEQVDVTKIVAAVERCCDGLPEVDPLRVATKTISGLYDGATTAELD 90 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA--THHEMQCLYPEYFC 257 I ++ + EP Y+++ R L + +EV A T HE Q L + Sbjct: 91 KLAIATAAEMTATEPQYSRLAGRLLAGVIDKEVRGQGIGSFSAAVRTGHE-QGLIGDETA 149 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ E H S +D D VY A D+ F+Y GL+ +YDRY L +R +E Sbjct: 150 AFVAE-------HASRLD-DAVYRAQ--AAHADWRFDYFGLRTVYDRYLLRHPLTRAVVE 199 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 PQ + MRV+ GL+ E AVEF+ LLSS ++ S+PTLFNSGTRH Q+SSC+L Sbjct: 200 SPQYWLMRVSAGLSHTGEE----AVEFFELLSSLAYLPSSPTLFNSGTRHTQMSSCYLID 255 Query: 376 VP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 P DDL I+ + A L+K++GG+G ++ +R GA I GTNG S G++P+L+ + + Sbjct: 256 SPQDDLDSIYERYHQVAKLSKFAGGIGLAFSRIRSRGALIRGTNGHSNGIVPWLRTLDAS 315 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AVNQGG+RKGA C YLE WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV Sbjct: 316 VAAVNQGGRRKGAACIYLEPWHPDVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVE 375 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + W+L PD V +L DL+G F+ AY E + D V R +SA L+ +M+ L Sbjct: 376 ADGQWSLIDPDAVPELPDLWGPAFDAAYRAAEERGD-----VVRTVSARYLYGRMMRTLA 430 Query: 555 ETGHPWITFKDPCNIRSPQ---------------QHVGVVHSSNLCTEITLNSSSEETAV 599 +TG W+TFKD N Q Q VVH SNLCTEI +S++ETAV Sbjct: 431 QTGQGWMTFKDASNRACNQTSDDQTPRVAADGTVQPAPVVHLSNLCTEIIEVTSNDETAV 490 Query: 600 CNLGSINLLAHFA----------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 CNLGS+NL AH D D+L ST+R AV LD VIDIN + Sbjct: 491 CNLGSVNLAAHLQWSDGTTGVRPTDPAARATGIDTDRLRSTVRLAVTYLDRVIDINYYPS 550 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E+A SN R IGLG MG Q L +P+ +PEA E++ E I A+ S ELA+ Sbjct: 551 EQAAASNPRWRPIGLGSMGLQDVFFALRMPFDAPEAKELSTRIAEEIQLSALERSAELAE 610 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 + GA+ +F + +G D G + +T R W +++R+ G+RNS Sbjct: 611 QFGAHPAFAETRAARGQLQHDLQG--------VEPTQTER--WAAVRQRIADHGLRNSLM 660 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +AIAPTATIA+I G + I+P NL+ + +SG+F VN+ LV ELK LW EA+ Sbjct: 661 IAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFMQVNTALVGELKSLGLWTEAVREK 720 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 LK +GS+ I +P++ +++ TA+E+ LIE A+ RQ ++DQ+QSLNL+++ P+ Sbjct: 721 LKADNGSVAGIADLPEETRRLFRTAWELPQKALIEMAAARQAYVDQSQSLNLFMESPNIG 780 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-----GKLNAVPVTDPNSSTHSL 938 KL +Y AW GLKTTYYLRSR AT ++++T+ GV G P ++ S Sbjct: 781 KLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVAGVRAGASWGAATGAPGASQPTAPGSP 840 Query: 939 GIPSSCTS 946 G+ T+ Sbjct: 841 GVVGGLTA 848 >gi|311743884|ref|ZP_07717690.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium marinum DSM 15272] gi|311313014|gb|EFQ82925.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium marinum DSM 15272] Length = 828 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 302/816 (37%), Positives = 474/816 (58%), Gaps = 23/816 (2%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202 + ++ DGT ++ + +EEA +GL D +++ + SE ++DG++ L+ A+ Sbjct: 3 ITVIKRDGTRAPYDGYEIARSIEEAATGLPDQVARVTQLQSELEITLFDGITSEQLDEAV 62 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + ++ +P + + +R L++ L ++V + T E+ + F + Sbjct: 63 VGVALQNVKDDPAFDTIASRLLVKTLYKKVFG------EGVTRDEVDAFHGPAFVASVVR 116 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAF 320 GV+ LL + + +DL L L RD Y+G+Q + RY L +G+ +E+PQ F Sbjct: 117 GVELGLLDHRLAERYDLEVLGAALDPARDDLLRYIGVQTMRTRYMLVEPDGTPLEVPQFF 176 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +MRV+MGLAL E + A+ FY+ +S ++ + TL N+GT + QLS+CF+ + DD+ Sbjct: 177 WMRVSMGLALDEADPTAAALAFYDKMSRLEYLAAGSTLVNAGTGYAQLSNCFVMQMEDDI 236 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I ++++ L K +GG+G + +R G+ I + S G IPF+ + T A+++ Sbjct: 237 EHIAKSVRDVMWLTKGTGGIGLSVSKLRSEGSPIRSNHTTSTGPIPFMHTIDSTLRAISR 296 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGK+ GA+C Y+E WH+D +FLDLR N+GD RRT NTA WI D FMKRV + W Sbjct: 297 GGKKFGALCFYMENWHLDFAQFLDLRANSGDPYRRTRTANTAVWISDEFMKRVADDLDWY 356 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P +V DL +L+G F Y Y +AD G ++ +K+ A +R +L L + HPW Sbjct: 357 LFDPLDVPDLTELFGAAFSARYAEYVAEADAGRLR-HKKLRAREQFRAILVSLQASSHPW 415 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQF 616 +T+KD N R+ + G +H SNLCTEITL + AVCNL SINL H ++ Sbjct: 416 LTWKDTINTRALNHNTGTIHLSNLCTEITLPQDRDNVAVCNLASINLSRHLVGRRSDAHI 475 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+D+LA + R AVR LDN+IDI ++ ++++SN +RA+GLG+MGF + Y S Sbjct: 476 DWDRLAGSTRLAVRQLDNLIDITISSVPESERSNEQNRALGLGVMGFTDVVERFGWSYES 535 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-E 735 +A ++ DE MEF+S+HAI AS +LA+ERGAY +F+GS W QG+ PIDS+ LLA R Sbjct: 536 EQAYDLIDEVMEFVSWHAIDASADLARERGAYPNFEGSRWSQGLVPIDSLDLLAADRGVP 595 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + ++RT+RL WD L+ +V G+RNS MA+APTA+I + G + +DP + ++ ++ Sbjct: 596 VEVDRTTRLDWDALRAKVAG-GVRNSTLMAVAPTASIGLVAGTTPGLDPQFSQIFSRATS 654 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG F VN LV +L+ LW E + DL H G + ++ +P +L++I+ T+F++ P Sbjct: 655 SGKFLEVNRNLVEDLQALGLW-ETVREDLLRHQGDLSKVDGVPAELQEIYRTSFQLSPYA 713 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + A+R QKWIDQA S N+YL ++ +Y AW MG+KTTYYL + E+ST Sbjct: 714 FLHVAARAQKWIDQAISRNIYLQSRDVGEMAELYAAAWRMGVKTTYYLHMMPRHTAEQST 773 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951 + K+N + P G + T+ E + Sbjct: 774 V-----KVNKAASSTPAGGAARRGFGAVATAPVEVQ 804 >gi|238061573|ref|ZP_04606282.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. ATCC 39149] gi|237883384|gb|EEP72212.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. ATCC 39149] Length = 792 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 327/794 (41%), Positives = 457/794 (57%), Gaps = 49/794 (6%) Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225 VE + L +V V ++T +YDG + ++L+ I ++ LI +EP Y+K+ AR L Sbjct: 43 VERWVADLDEVDPLRVATKTISGLYDGATTAELDKLSIQTAAELISEEPQYSKLAARLLA 102 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + +EV + Q+ Y + I + A + + D V A DL Sbjct: 103 AYVDKEV------RGQQVASFSQSVRY-AHGLGLIGDDTAAFVARNARKLDDAVDPAGDL 155 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + FEY GL+ + DRY L SR +E PQ + +RVA GL +E A+ FY Sbjct: 156 R------FEYFGLRTVADRYLLRQPESRLVVETPQYWLLRVACGL----SETPAEAIGFY 205 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGN 402 L+SS ++ S+PTLFNSGTRH Q+SSCFL P D+L I+ + A L+K+SGG+G Sbjct: 206 RLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYERYHQVAKLSKFSGGIGI 265 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 W+ VRG GA I GTNG+S G++PFLK + AVNQGG+RKGA C YLE WH D+EEF Sbjct: 266 AWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEF 325 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 L+LR NTG++ RRTH++N ANWIPD FM+RV + W+L P + +L DLYG+EF+ AY Sbjct: 326 LELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLIDPSDAPELPDLYGEEFDAAY 385 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVH 580 E++A R + A L+ +M+ L +TG+ W+TFKDP N S Q V +H Sbjct: 386 RIAEKKA-------IRTVKARDLYGRMMRTLAQTGNGWMTFKDPSNRLSNQTGVPGNTIH 438 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEI +S ETAVCNLGSINL AH + D+ KL ST+RTAV LD VIDIN Sbjct: 439 LSNLCTEILEVNSDTETAVCNLGSINLGAHVTVDGVDWVKLRSTVRTAVVFLDRVIDINY 498 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + +A SN R +GLGLMG Q A L +P+ S A E++ E I A+ S Sbjct: 499 YPATQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAAARELSTRVQEEIFLTALETSAG 558 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 L++ G + ++ + +G D G + +T R W L+ + G+RN Sbjct: 559 LSERFGPHPAYAETRAARGELHPDLWG--------VEPTQTER--WAALRATIAAHGLRN 608 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +AIAPTATIA+I G + I+P NL+ + MSG+F +N++LV ELK LW + Sbjct: 609 SLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTYLVRELKAHGLWTPQI 668 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 +K +GS+ I+ +P D++++ TA+E+ LI+ A+ R +IDQ+QSLNL+L P Sbjct: 669 RDQIKRAEGSVQGIDDLPADVRELFRTAWELPQRTLIDLAAARAPYIDQSQSLNLFLSAP 728 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + KL +Y AW GLKTTYYLRSR AT ++++T+ V V+D + SL Sbjct: 729 TIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATV----AVKPVVAVSDTEALACSLEN 784 Query: 941 PSSCTSDTECEVCQ 954 P S CE CQ Sbjct: 785 PES------CEACQ 792 >gi|145596897|ref|YP_001161194.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora tropica CNB-440] gi|145306234|gb|ABP56816.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora tropica CNB-440] Length = 909 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 326/806 (40%), Positives = 458/806 (56%), Gaps = 51/806 (6%) Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225 VE + L +V V ++T +YDG + ++L+ I ++ LI +EP Y+K+ AR L Sbjct: 138 VERWVADLDEVDPLRVATKTISGLYDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLA 197 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + +EV + Q+ Y +E + +D D V A DL Sbjct: 198 AYVDKEV------RGQQVASFSQSIRYAHGLGLISDETAAFVSRNARKLD-DAVDPAGDL 250 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + FEY GL+ + DRY L SR +E PQ + +RVA GL+ E A+ FY Sbjct: 251 R------FEYFGLRTVADRYLLRHPQSRLVVETPQYWLLRVACGLSGTPAE----AIGFY 300 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGN 402 L+SS ++ S+PTLFNSGTRH Q+SSCFL P D+L I+ + A L+K+SGG+G Sbjct: 301 RLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGI 360 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 W+ VRG GA I GTNG+S G++PFLK + AVNQGG+RKGA C YLE WH D+EEF Sbjct: 361 AWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEF 420 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 L+LR NTG+D RRTH++N ANW+PD FM+RV + W+L P E +L DLYG+EF+ AY Sbjct: 421 LELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLIDPSEAPELPDLYGEEFDAAY 480 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVH 580 E+ K R + A L+ +M+ L +TG+ W+TFKD N S Q + +H Sbjct: 481 RVAEK-------KAVRTVKARDLYGRMMRTLAQTGNGWMTFKDRSNTLSNQTGEPGNTIH 533 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEI ++ ETAVCNLGS+NL AH + D++KL T+RTAV LD VIDIN Sbjct: 534 LSNLCTEILEVNNDAETAVCNLGSVNLGAHVTADGVDWEKLRDTVRTAVVFLDRVIDINY 593 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + E+A SN R +GLGLMG Q A L +P+ S EA E++ E I A+ S Sbjct: 594 YPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAG 653 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ G + ++ + +G + G + W LK RV G+RN Sbjct: 654 LAERFGPHPAYAQTRAARGDLHPELWGAVPSQPQR----------WAGLKARVGEHGLRN 703 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +AIAPTATIA+I G + I+P NL+ + MSG+F VN++LV ELK R LW ++ Sbjct: 704 SLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARGLWTASI 763 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 +K +GS+ + +P +++++ TA+E+ LI+ A+ R +IDQ+QSLNL+L P Sbjct: 764 RDQIKRAEGSVQGLAELPAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAP 823 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK-------GVDGKLNAVPVTDPNS 933 + KL +Y AW GLKTTYYLRSR AT ++++T+ GV +A P +S Sbjct: 824 TIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAVTSTAQPGVAVASSAQPGGAASS 883 Query: 934 -----STHSLGIPSSCTSDTECEVCQ 954 T + + S + CE CQ Sbjct: 884 ISGFAGTDAEALACSLENPESCEACQ 909 >gi|159040365|ref|YP_001539618.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora arenicola CNS-205] gi|157919200|gb|ABW00628.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora arenicola CNS-205] Length = 821 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 327/834 (39%), Positives = 468/834 (56%), Gaps = 58/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G + ++ VE + L +V V ++T +YDG + ++L+ I Sbjct: 22 MEVRKRNGDTEPVDVNKIVKAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRLSIQ 81 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y+K+ AR L + +EV + Q+ Y + I + Sbjct: 82 TAAELIGEEPQYSKLAARLLAAYVDKEV------RGQQVASFSQSIRY-AHGLGLISDDT 134 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322 A + + D V A DL+ FEY GL+ + DRY L SR +E PQ + + Sbjct: 135 AAFVSRNARKLDDAVDPAGDLR------FEYFGLRTVADRYLLRHPQSRLVVETPQYWLL 188 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA G++ E A+ FY L+SS ++ S+PTLFNSGTRH Q+SSCFL P D+L Sbjct: 189 RVACGMSRTPAE----AIGFYQLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELD 244 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ + A L+K+SGG+G W+ VRG GA I GTNG+S G++PFLK + AVNQG Sbjct: 245 SIYQRYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQG 304 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++N ANW+PD FM+RV + W+L Sbjct: 305 GRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSL 364 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + +L DLYG EF+ AY E+ K R + A L+ +M+ L +TG+ W+ Sbjct: 365 IDPSDAPELPDLYGDEFDAAYRVAEK-------KAVRTVKARDLYGRMMRTLAQTGNGWM 417 Query: 562 TFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 TFKD N S Q Q +H SNLCTEI ++ ETAVCNLGS+NL AH + D++ Sbjct: 418 TFKDRSNTLSNQTGQPANTIHLSNLCTEILEVNNDTETAVCNLGSVNLGAHVTVDGVDWE 477 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL +T+RTAV LD VIDIN + E+A SN R +GLGLMG Q A L +P+ S EA Sbjct: 478 KLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEA 537 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 E++ E I A+ S LA+ G + ++ + +G D G Sbjct: 538 SELSTRVQEEIFLTALETSAGLAERFGPHPAYAETRAARGDLHPDLWGATP--------T 589 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +T R W LK R+ G+RNS +AIAPTATIA+I G + I+P NL+ + MSG+F Sbjct: 590 QTRR--WAGLKARIAEHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEF 647 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VN++LV ELK R LW + ++ +GS+ + +P +++++ TA+E+ LI+ Sbjct: 648 LQVNTYLVGELKARGLWTAQIRDQIRRAEGSVQGLGELPAEVRELFRTAWELPQRALIDL 707 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL--- 916 A+ R +IDQ+QSLNL+L P+ KL +Y AW GLKTTYYLRSR AT ++++T+ Sbjct: 708 AAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAVT 767 Query: 917 ----KGVDGKLNAVPVTDP------------NSSTHSLGIPSSCTSDTECEVCQ 954 GV +A P P + T + + S + CE CQ Sbjct: 768 PTVPPGVADASSAQPGVAPGLSGAAASSASGVAGTDAEALACSLENPESCEACQ 821 >gi|314928744|gb|EFS92575.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL044PA1] Length = 854 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 300/786 (38%), Positives = 457/786 (58%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + ++ L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYFP 123 Query: 258 RYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IE 315 R I + V L E + F+L LA L RD + G++ + +RY L + +E Sbjct: 124 RTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL++ E + A+ YN +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 DDL I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G F Y Y QA G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---- 611 T HPW+T+KD N R+ + G +HSSNLCTEI L + T+VCNL S+NL AH Sbjct: 424 TSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGPR 483 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + ++D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SPEA EI D +EFIS+HAI S +LA ERG+Y F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T G+RN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LWD +L G I+ IP L+ ++ T+F Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLWDSTR-EELLRRQGDPSEIDAIPASLRHLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DP+ + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|313836279|gb|EFS73993.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL037PA2] gi|314971219|gb|EFT15317.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL037PA3] gi|328906507|gb|EGG26282.1| ribonucleotide-diphosphate reductase subunit alpha [Propionibacterium sp. P08] Length = 854 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 300/786 (38%), Positives = 457/786 (58%), Gaps = 12/786 (1%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197 PI+ +++ DG+L ++ + + ++ GL D ++ L +E ++DG++ Sbjct: 5 PIS-TIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTDA 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A+I + + +P + + +R ++KL +EV + ++ L+ YF Sbjct: 64 LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYFP 123 Query: 258 RYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IE 315 R I + V L E + F+L LA L RD + G++ + +RY L + +E Sbjct: 124 RTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKALE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ F+MRVAMGL++ E + A+ YN +S+ + + TL N+GT QLS+CF+ Sbjct: 184 VPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 DDL I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 244 TEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDSTL 303 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV + Sbjct: 304 RAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W LF P E DL +L G F Y Y QA G+IK FR+ +A +R +L L Sbjct: 364 DEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQT 423 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---- 611 T HPW+T+KD N R+ + G +HSSNLCTEI L + T+VCNL S+NL AH Sbjct: 424 TSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGPR 483 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + ++D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 484 GKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY SPEA EI D +EFIS+HAI S +LA ERG+Y F+GS W +G+ P+D++ +L Sbjct: 544 VPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLER 603 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+R+ WD L+ +V+T G+RN+ MAIAPTA+I I G + +DP + ++ Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQMF 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ +G F VN LV +LK LWD +L G I+ IP L+ ++ T+F Sbjct: 663 SRATSAGKFLEVNRNLVADLKDLGLWDSTR-EELLRRQGDPSEIDAIPASLRHLYRTSFT 721 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DP+ + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL + Sbjct: 722 LDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781 Query: 911 VEKSTL 916 E+ST+ Sbjct: 782 AEQSTV 787 >gi|302542645|ref|ZP_07294987.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces hygroscopicus ATCC 53653] gi|302460263|gb|EFL23356.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces himastatinicus ATCC 53653] Length = 804 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 311/791 (39%), Positives = 452/791 (57%), Gaps = 48/791 (6%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 V + + + G E++L + ++ LI +EP Y+K+ AR L Sbjct: 45 VAAAALRGRHPGSDEAELRSLATEAAAGLIGEEPEYSKLAARLL---------------- 88 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN-DLKYERDFA------F 293 +A E + F + G + L+ +S +F + A D +R A F Sbjct: 89 TRAIADEAAGQGADSFSASVAVGHREGLIADSTAEFVTAHTARLDALVDRALADGADDRF 148 Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFH 350 Y GL+ L+ RY L I IE PQ F +RVA GLA +E+ V E Y + S+ Sbjct: 149 GYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALDDVAELYRMTSTLS 208 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ +R Sbjct: 209 YLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHAGGIGLSYSRIRA 268 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G+ I GTNG S G++PFL+ + + AVNQGG+RKGA C YLETWH D+EEFL+LR NT Sbjct: 269 RGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHADIEEFLELRDNT 328 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G++ RRTH++N A+WIPD FM+RV + W+LFSP + +L DL+G+EF+ AY E Sbjct: 329 GEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFSPVDAPELVDLWGEEFDAAYRKAE--- 385 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTE 587 E + +++ A L+ +M+ L +TG+ W+TFKD N + Q VVHSSNLCTE Sbjct: 386 --AEGRALKQVPARQLYSRMMRTLAQTGNGWMTFKDAANRTANQTAEAGRVVHSSNLCTE 443 Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 I + ETAVCNLGS+NL AH + + D+++L T+RTAV LD V+DIN + E+A Sbjct: 444 ILEVTDDGETAVCNLGSVNLSAHLGEDGEMDWERLDRTVRTAVTFLDRVVDINFYPTEEA 503 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 SN R +GLGLMG Q L +P+ SPEA ++ E I A AS +LA+ G Sbjct: 504 GASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQALSTRISERIMLAAYEASCDLAERHG 563 Query: 707 AYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 + ++ + +GV P G A + W+ L+ R+ T GMRNS +A Sbjct: 564 PHPAWAETRTARGVLHPDHYTGAQAAWPER----------WEALRTRMATTGMRNSLLLA 613 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPTATIA+I GV + I+P NL+ + +SG+F VN++LVN+LK+ +WD L+ Sbjct: 614 IAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNNYLVNDLKKLGVWDTQTRDALR 673 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 +GS+ ++ +P D++ ++ TA+EI LI+ A+ R ++DQ+QSLNL++ P+ KL Sbjct: 674 EANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAAARTPYLDQSQSLNLFMAAPTIGKL 733 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 +Y AW G+KTTYYLRSR AT + +S G VP P T +C+ Sbjct: 734 SSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGAATATTPVPAPVPAQQTPDEADAVACS 793 Query: 946 SDT--ECEVCQ 954 + CE CQ Sbjct: 794 LENPESCEACQ 804 >gi|256391239|ref|YP_003112803.1| ribonucleoside-diphosphate reductase, subunit alpha [Catenulispora acidiphila DSM 44928] gi|256357465|gb|ACU70962.1| ribonucleoside-diphosphate reductase, alpha subunit [Catenulispora acidiphila DSM 44928] Length = 841 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 324/798 (40%), Positives = 451/798 (56%), Gaps = 62/798 (7%) Query: 169 ACSG-LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 ACS L D+ V+ +T+ + G + + S+ LI +EP Y+K+ AR L Sbjct: 94 ACSADLPDIDVNRVVRKTFAGLPPGAGADQVADLAVQSAAELIGEEPQYSKLAARLLSGV 153 Query: 228 LRREVL---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD-LVYLAN 283 + RE T + H E + V L+ + FD + A Sbjct: 154 IAREAAGQGATSFSASVAVGHREG-----------LIGDVTEALITGAAARFDAAIDPAG 202 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE 341 DL+ FEY GL+ +YDRY L +R IE PQ F +RVA GL ++ + AV Sbjct: 203 DLR------FEYFGLRTVYDRYLLRHPVTRRVIETPQHFLLRVAAGL----SQDPQEAVG 252 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400 FY L+SS ++ S+PTLFNSGTRH Q+SSC+L P D+L I+ + A L+K++GG+ Sbjct: 253 FYRLMSSLAYLPSSPTLFNSGTRHTQMSSCYLVDSPLDELDSIYDRYHQVARLSKFAGGI 312 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ VR GA I TNG+S G++PFL+ + + AVNQGG+RKGA C YLE WH D+E Sbjct: 313 GIGFSRVRSRGALIRSTNGRSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLEPWHPDIE 372 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL LR NTG+D RRTH++N ANWIPD FM+RV + W+L PD+V +L DL+G EF+ Sbjct: 373 EFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMDPDQVPELPDLWGAEFDA 432 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GV 578 AY E E + R++SA L+ KM+ L +TG+ W+TFKD N Q V Sbjct: 433 AYRKAE-----AEGRYSRQVSARELYGKMMRTLAQTGNGWMTFKDASNQLCNQTGVPGNT 487 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636 VH SNLCTEI SS ETAVCNLGSINL AH A + D+D+L +T+RTAV LD VI Sbjct: 488 VHLSNLCTEIIEVSSDTETAVCNLGSINLAAHLTPARDAVDWDRLRATVRTAVVFLDRVI 547 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + E+ SN R +GLGLMG Q L +P+ A E++ E I A+ Sbjct: 548 DINYYPSEQTAASNPRWRPVGLGLMGLQDVFFALRLPFDDERARELSTRISEEIYLTALE 607 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S LA+E GA+ +F + +G D + ELA W+ ++ RV Sbjct: 608 TSAGLAEEFGAHPAFADTRAAKGDLQPDLWNV--ATSPELATR------WNAVRGRVAAT 659 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +AIAPTATIA+I G + I+P NL+ + +SG+F +NS LV ELK LW Sbjct: 660 GLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFLQINSALVGELKALGLW 719 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 A+ +K +GS+ +E +P +++ ++ TA+E+ LI+ A+ R +IDQ+QSLNL+ Sbjct: 720 TPAVREAIKRAEGSVQGVEALPAEVRALYRTAWELPQRALIDLAAARGPFIDQSQSLNLF 779 Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 L P+ KL +Y AW GLK+TYYLRSR AT ++++T+ + A + +P S Sbjct: 780 LAAPTIGKLSSMYMYAWKAGLKSTYYLRSRPATRIQQATVAVAAEEAVACSLENPES--- 836 Query: 937 SLGIPSSCTSDTECEVCQ 954 CE CQ Sbjct: 837 -------------CEACQ 841 >gi|311898298|dbj|BAJ30706.1| putative ribonucleoside-diphosphate reductase subunit alpha [Kitasatospora setae KM-6054] Length = 804 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 317/808 (39%), Positives = 456/808 (56%), Gaps = 49/808 (6%) Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 ++ + + L V V + + + G ++L + ++ ++I ++P Y+K+ AR L Sbjct: 28 LLTDRSTDLPQVDPGHVAAAALRGRHAGSDFAELRGLAVEAAASMIAEDPQYSKLAARLL 87 Query: 225 LEKLRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 ++R E T T + H E I + A + + + LV Sbjct: 88 ALEIRDEAATQQVTSFSSSVAVGHAEG----------LIGDATAAFVAAHADLFDSLVDE 137 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 A D + FEY GL+ + RY L I +E PQ F +RVA GLA+ +E+ R Sbjct: 138 AGDDR------FEYFGLRTVQSRYLLRHPITRKVVETPQHFLLRVAAGLAVGTSEESVRE 191 Query: 340 V-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 V E Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++ Sbjct: 192 VAELYTLMSRLEYLTSSPTLFNSGTRHPQMSSCYLLDSPLDNLDSIYNRYAQIARLSKHA 251 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ +R G+ I GTNG+S G++PFL+ + + AVNQGG+RKGA C YLETWH Sbjct: 252 GGIGLSYSRIRSRGSLIRGTNGQSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLETWHA 311 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV NA W+LFSP +V +L DL+G + Sbjct: 312 DIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFSPADVPELVDLWGAD 371 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 F+ AY E K R I A L+ +M+ L +TG+ W+TFKD N + Q + Sbjct: 372 FDEAYVKAELAG-----KAVRTIPAQTLYARMMRTLAQTGNGWMTFKDASNRAANQTALP 426 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--------NQFDYDKLASTIRT 627 VHSSNLCTEI + ETAVCNLGS+NL AH A N D+D+L +T+RT Sbjct: 427 GRTVHSSNLCTEILEVTDDSETAVCNLGSVNLGAHVAPGATAADLLNAMDWDRLDATVRT 486 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AV LD VIDIN + +A SN R +GLG+MG Q L I + S EAV ++ Sbjct: 487 AVTFLDRVIDINFYPTTEAGTSNSRWRPVGLGVMGLQDVFFQLRIDFDSAEAVALSTLIA 546 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I A S +LA+ G + ++ + +G +D G A N WD Sbjct: 547 ERIMLTAYERSADLAERFGRHEAYGETRAARGQLHVDHFG---------AANPQWTERWD 597 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ R+ +G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN +LV Sbjct: 598 ALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNPYLV 657 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 ELK+ +WD+ L+ +GSI +P +++ ++ TA+E+ LI+ A+ RQ +I Sbjct: 658 RELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRSLYRTAWELPQRALIDLAAARQPYI 717 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQ+QSLNL++ P+ KL +Y AW +GLKTTYYLRSR AT + ++ VP Sbjct: 718 DQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKTTYYLRSRPATRIAQAAPG-AARTAAPVP 776 Query: 928 VTDPN-SSTHSLGIPSSCTSDTECEVCQ 954 V P S I S + CE CQ Sbjct: 777 VQTPTLSQAEQDAIACSLENPESCEACQ 804 >gi|291303012|ref|YP_003514290.1| ribonucleoside-diphosphate reductase subunit alpha [Stackebrandtia nassauensis DSM 44728] gi|290572232|gb|ADD45197.1| ribonucleoside-diphosphate reductase, alpha subunit [Stackebrandtia nassauensis DSM 44728] Length = 771 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 319/801 (39%), Positives = 459/801 (57%), Gaps = 59/801 (7%) Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 +V SGL DV ++ V + G +E++L + + +L+ EP Y+++ AR L Sbjct: 19 VVRRLASGLADVEAETVSGPVVAGNWPGATEAELRLRAVEVAASLVATEPGYSRLAARLL 78 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF------DL 278 E + EV + ++ C F + G +A L+ + + +F L Sbjct: 79 SEHIGDEVRLS-----------DVGC-----FSEAMSAGYRAGLISDGLWEFVSSNAPKL 122 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKE 336 L +D +R FEY G++ +YDRY L +R+ E PQ FFMRVA GL +E Sbjct: 123 DALVDDGADDR---FEYFGIRTVYDRYLLRHPETRLVLETPQHFFMRVACGL----SETV 175 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAK 395 E Y LLS+ ++ S+PTLFN+GTR QLSSCFL P D+L I+ + A L+K Sbjct: 176 SDVTELYGLLSTLSYLPSSPTLFNAGTRRSQLSSCFLLDSPRDELESIYDRYSQAARLSK 235 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 Y+GG+G W+ +R G+ I GTNG S G++P+L+ + + AVNQGG+RKGA C YL TW Sbjct: 236 YAGGIGMAWSRIRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYLATW 295 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EEFL+LR NTG + RRTH++N ANWIPD FM+RV + W+LF P +V +L DL+G Sbjct: 296 HADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFDPKDVPELVDLWG 355 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EFE AY + E K R +SA L+ +M+ L +TG+ W+TF D N Q Sbjct: 356 EEFEKAYRDAEAAG-----KAARVVSARDLYGRMMRTLAQTGNGWMTFADISNRTCNQTA 410 Query: 576 V--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 V VVH SNLCTEI +S ETAVCNLGS+NL AH + FD+++LA ++RTAV LD Sbjct: 411 VPGNVVHLSNLCTEILEVTSDAETAVCNLGSVNLAAHCVDGGFDFERLARSVRTAVTFLD 470 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 ID+ + +A+K+N R IGLGLMG L +P+ S EA E+++ E I+ Sbjct: 471 RSIDLTYYPTAEAEKANRRWRPIGLGLMGMADVFFKLRMPFDSAEARELSNRISETIALA 530 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A S +LA GA+ S+ + +GV +D A V D A W +++ V Sbjct: 531 AYETSADLAARLGAHPSYDDTRAARGVLHVDHFA-DAAVTDPDA--------WQRVRELV 581 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +AIAPTATIA I G S+ +P N++ + +SG+F VN +L+ +LKQR Sbjct: 582 AANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFIQVNKYLIADLKQR 641 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW+E + + +GSI +I IP +L++++ TA+E+ LI+ A+ R +IDQ+QSL Sbjct: 642 GLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLAAGRTPFIDQSQSL 701 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 NL++ P+ KL +Y AW GLKTTYYLRSR AT + ++T+ + P Sbjct: 702 NLFMAAPTIGKLSSMYAYAWRSGLKTTYYLRSRPATRINQTTV-----------ASAPEV 750 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 + I S + CE CQ Sbjct: 751 DAEAEAIACSLENPETCEACQ 771 >gi|302554046|ref|ZP_07306388.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces viridochromogenes DSM 40736] gi|302471664|gb|EFL34757.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces viridochromogenes DSM 40736] Length = 793 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 319/798 (39%), Positives = 458/798 (57%), Gaps = 52/798 (6%) Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 E + L D V + + E++L ++ LI ++P Y+++ AR L Sbjct: 37 ELTADLPDTDPGRVAAAALRGRSARADEAELRDLATEAAAGLISEDPAYSRLAARLLTIG 96 Query: 228 LRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +R E + T + + H E L + ++ LH + +D + A+D Sbjct: 97 IRAEAASQGVTSFTESVVVGHRE--GLIADRTAEFVR-------LHAARLDALIDPAADD 147 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE- 341 F Y GL+ L+ RY L +R +E PQ F +RVA GLA T + V Sbjct: 148 R-------FGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVAAGLAEDHTARSVDEVAA 200 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+ Sbjct: 201 LYELMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHAGGI 260 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH DVE Sbjct: 261 GLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDVE 320 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL+LR NTG+D RRTH++N A+W+PD FM+RV +A W+LFSP +V +L DL+G+EF+ Sbjct: 321 EFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFSPSDVPELVDLWGEEFDT 380 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578 AY E +G K R + A L+ +M+ L +TG+ W+TFKD N + Q + V Sbjct: 381 AYRAAEA---KGLAK--RTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHV 435 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636 VHSSNLCTEI +S ETAVCNLGS+NL A + D+D+L +T+RTAV LD V+ Sbjct: 436 VHSSNLCTEILEVTSDGETAVCNLGSVNLGAFVDTSTGDLDWDRLDATVRTAVTFLDRVV 495 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I A Sbjct: 496 DINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRLPFDSPEAKALSTRIAERIMLAAYE 555 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ G +++ + +GV D ++ + R W L++R+ Sbjct: 556 ASADLAERSGPLPAWEKTRTARGVLHPDHY--------DVELTWPER--WAALRERIAAT 605 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV+ELK+ +W Sbjct: 606 GMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKRLGVW 665 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 D L+ GS+ + IP+D++ ++ TA+EI LI+ A+ R ++DQ+QSLNL+ Sbjct: 666 DARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLF 725 Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 L+ P+ KL +Y AW GLKTTYYLRSR AT + ++ V + A P DP + Sbjct: 726 LETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAQATVPAQ--ATP--DPEAVAC 781 Query: 937 SLGIPSSCTSDTECEVCQ 954 SL P S CE CQ Sbjct: 782 SLENPES------CEACQ 793 >gi|239944173|ref|ZP_04696110.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces roseosporus NRRL 15998] gi|239990629|ref|ZP_04711293.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces roseosporus NRRL 11379] gi|291447644|ref|ZP_06587034.1| ribonucleotide-diphosphate reductase large chain [Streptomyces roseosporus NRRL 15998] gi|291350591|gb|EFE77495.1| ribonucleotide-diphosphate reductase large chain [Streptomyces roseosporus NRRL 15998] Length = 807 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 314/770 (40%), Positives = 443/770 (57%), Gaps = 40/770 (5%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251 E++L + ++ LI ++P Y+++ AR L + E T + H E L Sbjct: 68 EAELRSLATEAAAGLISEDPAYSRLAARLLTLSIADEAAGQGATSFSASVAVGHRE--GL 125 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--I 309 + ++E LH +D +LV L D F Y GL+ L+ RY L I Sbjct: 126 IADRTAAFVE-------LHAKALD-ELV--ERTLAEGADDRFGYFGLRTLHSRYLLRHPI 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 IE PQ F +RVA GLA E+ + Y L+S ++ S+PTLFNSGTRHPQ+ Sbjct: 176 TRQVIETPQHFMLRVAAGLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQM 235 Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PF Sbjct: 236 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 295 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD Sbjct: 296 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 355 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546 FM+RV + W+LFSP +V +L DL+G F+ AY E + + RK + A L+ Sbjct: 356 EFMRRVDADTEWSLFSPADVPELVDLWGDAFDAAYRAAEAKG------LARKTMPARELY 409 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +M+ L +TG W+TFKD N + Q + VVHSSNLCTEI ++ ETAVCNLGS Sbjct: 410 GRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGS 469 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +NL A AN D+D+L ST+RTAV LD V+DIN + E+A SN R +GLG MG Q Sbjct: 470 VNLGAFVANGSIDWDRLDSTVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQ 529 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ SPEA ++ + E I A AS +LA+ G ++ + +GV D Sbjct: 530 DVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPD 589 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + +N R WD L+ RV GMRNS +AIAPTATIA+I GV + I+P Sbjct: 590 HY--------DTELNWPER--WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEP 639 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NL+ + +SG+F VN++LV+ELK+ +WD L+ GS+ IP+D++ + Sbjct: 640 QVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRAL 699 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLR Sbjct: 700 YRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 759 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 SR AT + ++ +PV S+ + I S + CE CQ Sbjct: 760 SRPATRIARAASG-QASAAAPIPVQQ-ASAPDADAIACSLENPESCEACQ 807 >gi|254384640|ref|ZP_04999979.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp. Mg1] gi|194343524|gb|EDX24490.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp. Mg1] Length = 797 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 320/829 (38%), Positives = 467/829 (56%), Gaps = 48/829 (5%) Query: 139 APIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197 AP AP+ + D G L + E + L D V + + E++ Sbjct: 4 APSAPRAESDPSDTGIETGGPGAALLRTLTELTADLPDTDPGRVAAAALRGRSAAADEAE 63 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCLYPE 254 L + ++ LI ++P Y+++ AR L +R E T + H E L + Sbjct: 64 LRSLATEAAAGLISEDPAYSRLAARLLTLAVRDEAAGQGATSFSASVAVGHRE--GLIAD 121 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 ++E ARL ++++++ L A+D F + GL+ L+ RY L I Sbjct: 122 RTAAFVEAHA-ARL--DALVEYTLAEGADD-------RFGFFGLRTLHSRYLLRHPITRQ 171 Query: 313 RIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 +E PQ F +RVA GLA E+ + + Y L+S ++ S+PTLFNSGTRHPQ+SSC Sbjct: 172 VVETPQHFMLRVACGLAADESVQAVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSC 231 Query: 372 FLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 +L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PFLK Sbjct: 232 YLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKT 291 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+W+PD FM Sbjct: 292 LDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFM 351 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 +RV +A W+LFSP +V +L DL+G +F+ AY E AD + RK + A L+ +M Sbjct: 352 RRVNADADWSLFSPADVPELVDLWGDDFDAAYRKAE--AD----GLARKTMPARDLYGRM 405 Query: 550 LTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 + L +TG W+TFKD N + Q + VVHSSNLCTEI ++ ETAVCNLGS+NL Sbjct: 406 MRTLAQTGQGWMTFKDASNRTANQTAEPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNL 465 Query: 608 LAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 A + D+++L T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 466 GAFVLTETGEIDWERLDETVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQD 525 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L +P+ SPEA ++ + E I A AS +LA+ G +++ + +GV D Sbjct: 526 VFFKLKLPFDSPEAKALSTKLSERIMLAAYEASCDLAERSGPLPAWEQTRTARGVLHPDH 585 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + +N R WD L+ RV GMRNS +AIAPTATIA+I GV + I+P Sbjct: 586 Y--------DTELNWPER--WDALRARVAESGMRNSLLLAIAPTATIASIAGVYECIEPQ 635 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 NL+ + +SG+F VN +LV ELK+ +WD L+ GS+ IP ++++++ Sbjct: 636 VSNLFKRETLSGEFLQVNGYLVEELKKLGVWDAQSREALREASGSVQGFGWIPAEVRELY 695 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLRS Sbjct: 696 RTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 755 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 R AT + ++ A PV P + + + S + CE CQ Sbjct: 756 RPATKIARAAQA-------ATPVALPQAVVDAEALACSLENPESCEACQ 797 >gi|86261680|emb|CAC17629.2| class I ribonucleotide-diphosphate reductase large subunit chain [Streptomyces jumonjinensis] Length = 811 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 308/793 (38%), Positives = 445/793 (56%), Gaps = 48/793 (6%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 L D V + + + G ++L ++ LI ++P Y+++ AR L + E Sbjct: 56 LPDTDPGRVAAAALRGRHAGSDAAELRGLATDAAAGLISEDPAYSRLAARLLTRTIADEA 115 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND---LKYER 289 + Q A F + G L+ + F ++ A + Sbjct: 116 ------EGQGAVS----------FSASVAVGFAEGLIADRTAAFVTLHAARLDALIDPAA 159 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346 D F Y GL+ LY RY L I IE PQ F +RVA GLA ++ + Y L+ Sbjct: 160 DDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSTRALDEVAALYRLM 219 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ Sbjct: 220 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYS 279 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH DVEEFL+L Sbjct: 280 RVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLEL 339 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+G +F+ AY Sbjct: 340 RDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFSPSDVPELVDLWGDDFDTAY--- 396 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSN 583 R+A+ + + + A L+ +M+ L +TG+ W+TFKD N + Q + VHSSN Sbjct: 397 -RRAEAAGL-ARKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTALPGRTVHSSN 454 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 LCTEI + ETAVCNLGS+NL A + D+++L +T+RTAV LD V+DIN + Sbjct: 455 LCTEILEVTDDAETAVCNLGSVNLAAFVTQDDIDWERLDATVRTAVTFLDRVVDINFYPT 514 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E+A +SN+ R +GLG MG Q L +P+ SP A ++ E I A AS +LA+ Sbjct: 515 EQAGRSNNRWRPVGLGAMGLQDVFFQLKLPFDSPAARTLSTRIAERIMLAAYEASADLAE 574 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRNS 761 G ++ + GV D N T P W+ L++R+ G+RNS Sbjct: 575 RHGPLPAWNETRTAHGVLHPDH------------YNTTPHWPDRWNALRERIAATGLRNS 622 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LV ELK +WD Sbjct: 623 LLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVQELKNLGVWDATTR 682 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 L+ +GSI N ++P D+++++ TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ Sbjct: 683 EALRDANGSIQNFTQVPADVRELYRTAWEIPQRGLIDMAAARTPYLDQSQSLNLFLETPT 742 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 KL +Y AW G+KTTYYLRSR AT + ++ G VPV P +T + Sbjct: 743 IGKLSSMYAYAWKQGIKTTYYLRSRPATRIARAASNTNAGA--TVPV--PAQTTPEDAVA 798 Query: 942 SSCTSDTECEVCQ 954 S + CE CQ Sbjct: 799 CSLENPESCEACQ 811 >gi|290957505|ref|YP_003488687.1| ribonucleotide-diphosphate reductase large chain [Streptomyces scabiei 87.22] gi|260647031|emb|CBG70130.1| ribonucleotide-diphosphate reductase large chain [Streptomyces scabiei 87.22] Length = 802 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 317/798 (39%), Positives = 456/798 (57%), Gaps = 56/798 (7%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228 A + L+ SS+ +E + + +E+ + LI ++P Y+K+ AR L + Sbjct: 49 AAAALRGRSSRAATAEMVAELRELATEA---------AAGLISEDPAYSKLAARLLAIGI 99 Query: 229 RREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 R E + T + + H E L + ++ +H + +D LV A D Sbjct: 100 RAEAASQGVTTFTESIAVGHRE--GLVADRTAEFVR-------VHGARLDA-LVDPAGDD 149 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE-F 342 + F Y GL+ L+ RY L +R +E PQ F +RVA GLA +T + V Sbjct: 150 R------FGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVASGLAEDDTPRAVDEVSAL 203 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLG 401 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G Sbjct: 204 YGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIG 263 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+EE Sbjct: 264 LSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEE 323 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+G+EFE A Sbjct: 324 FLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVPELVDLWGEEFEAA 383 Query: 522 YENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578 Y E + RK I+A L+ +M+ L +TG+ W+TFKD N + Q + V Sbjct: 384 YRKAEANG------LARKTIAARDLYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHV 437 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636 VHSSNLCTEI + ETAVCNLGS+NL A A D+++L T+RTAV LD V+ Sbjct: 438 VHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDLDWERLDETVRTAVTFLDRVV 497 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I A Sbjct: 498 DINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYE 557 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ G +++ + +GV D G+ E A + W L++RV Sbjct: 558 ASADLAERNGPLPAWEKTRTARGVLHPDHYGV------EPAWSER----WAALRERVAAT 607 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GMRN+ +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV +LK+ +W Sbjct: 608 GMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVRDLKELGVW 667 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 D L+ +GS+ + IP D++ ++ TA+EI LI+ A+ R ++DQ+QSLNL+ Sbjct: 668 DARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPYLDQSQSLNLF 727 Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 L+ P+ KL +Y AW GLKTTYYLRSR AT + ++ VPV +T Sbjct: 728 LETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAQGQARQPETTVPV---QQATS 784 Query: 937 SLGIPSSCTSDTECEVCQ 954 + S + CE CQ Sbjct: 785 EEALACSLENPESCEACQ 802 >gi|182436092|ref|YP_001823811.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464608|dbj|BAG19128.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 804 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 311/770 (40%), Positives = 439/770 (57%), Gaps = 40/770 (5%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251 E++L + ++ LI ++P Y+++ AR L + E T + H E L Sbjct: 65 EAELRSLATEAAAGLISEDPAYSRLAARLLTRTIADEAAGQGATSFSASVAVGHRE--GL 122 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--I 309 + ++ LH + +D + L D F Y GL+ L+ RY L I Sbjct: 123 IADRTAAFVA-------LHATALD---QLVGQALTDGADDRFGYFGLRTLHSRYLLRHPI 172 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 IE PQ F +RVA GLA E+ + Y L+S ++ S+PTLFNSGTRHPQ+ Sbjct: 173 TRQVIETPQHFMLRVAAGLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQM 232 Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PF Sbjct: 233 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 292 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD Sbjct: 293 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 352 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546 FM+RV + W+LFSP +V +L DL+G F+ AY E + + RK + A L+ Sbjct: 353 EFMRRVDADTEWSLFSPADVPELVDLWGDAFDAAYRAAEAKG------LARKTMPARELY 406 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +M+ L +TG W+TFKD N + Q + VVHSSNLCTEI + ETAVCNLGS Sbjct: 407 GRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGS 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +NL A AN D+D+L ST+RTAV LD V+DIN + E+A SN R +GLG MG Q Sbjct: 467 VNLGAFVANGSIDWDRLDSTVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQ 526 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ SPEA ++ + E I A AS +LA+ G ++ + +GV D Sbjct: 527 DVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSKTRAARGVLHPD 586 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +N R WD L+ RV GMRNS +AIAPTATIA+I GV + I+P Sbjct: 587 HYA--------TELNWPDR--WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEP 636 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NL+ + +SG+F VN++LV+ELK+ +WD L+ GS+ IP+D++ + Sbjct: 637 QVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRAL 696 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLR Sbjct: 697 YRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 756 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 SR AT + ++ +PV S+ + I S + CE CQ Sbjct: 757 SRPATRIARAASG-QASAAAPLPVQQ-ASAPDADAIACSLENPESCEACQ 804 >gi|29829568|ref|NP_824202.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces avermitilis MA-4680] gi|29606676|dbj|BAC70737.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptomyces avermitilis MA-4680] Length = 793 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 313/772 (40%), Positives = 445/772 (57%), Gaps = 50/772 (6%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 E++L ++ LI ++P Y+++ AR L + E + Q T Sbjct: 60 EAELRELATEAAAGLISEDPAYSRLAARLLTISIAEEAAS------QGVTS--------- 104 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLAND---LKYERDFAFEYLGLQILYDRYFLH--I 309 F I G + L+ + DF ++ A + D F Y GL+ L+ RY L I Sbjct: 105 -FSASITVGHREGLVADRTADFVRLHTARLDALIDTGADDRFGYFGLRTLHSRYLLRHPI 163 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQL 368 IE PQ F +RVA GLA +T V Y L+S ++ S+PTLFNSGTRHPQ+ Sbjct: 164 TRRVIETPQHFMLRVASGLAEDDTSHAVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQM 223 Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PF Sbjct: 224 SSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPF 283 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D RRTH++N A+WIPD Sbjct: 284 LKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPD 343 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FM+RV +N W+LFSP +V +L DL+G EF+ AY E + G K + I A L+ Sbjct: 344 EFMRRVNENGVWSLFSPADVPELVDLWGDEFDAAYRKAE---EAGLAK--KTIPARDLYG 398 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +M+ L +TG+ W+TFKD N + Q + VVHSSNLCTEI + ETAVCNLGS+ Sbjct: 399 RMMRTLAQTGNGWMTFKDAANRTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSV 458 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 459 NLGAFVVGRDIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQD 518 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L +P+ SPEA ++ E I A AS +LA+ G +++ + +GV D Sbjct: 519 VFFKLRLPFDSPEAQALSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDH 578 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 ++ + R W L++R+ +GMRNS +AIAPTATIA+I GV + I+P Sbjct: 579 F--------DVELTWPER--WAALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQ 628 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 NL+ + +SG+F VNS+LV+ELKQ +WD L+ GS+ +P D++ ++ Sbjct: 629 VSNLFKRETLSGEFLQVNSYLVDELKQLGVWDAQTREALRESGGSVQGFTWVPQDVRDLY 688 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 TA+EI LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLRS Sbjct: 689 RTAWEIPQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRS 748 Query: 906 RSATSVEKSTLKGVDGKLNAVP---VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 R AT + ++ + +P V++P++ SL P S CE CQ Sbjct: 749 RPATRIARAAQAQAQPE-KTIPVQQVSEPDAVACSLENPES------CEACQ 793 >gi|254388986|ref|ZP_05004217.1| ribonucleotide-diphosphate reductase large chain [Streptomyces clavuligerus ATCC 27064] gi|294814922|ref|ZP_06773565.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] gi|326443294|ref|ZP_08218028.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces clavuligerus ATCC 27064] gi|197702704|gb|EDY48516.1| ribonucleotide-diphosphate reductase large chain [Streptomyces clavuligerus ATCC 27064] gi|218078698|emb|CAB90707.4| class Ia ribonucleotide-diphosphate reductase large subunit chain [Streptomyces clavuligerus ATCC 27064] gi|294327521|gb|EFG09164.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] Length = 810 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 310/792 (39%), Positives = 444/792 (56%), Gaps = 46/792 (5%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 L D V + + + G ++L ++ LI ++P Y+++ AR L + E Sbjct: 55 LPDTDPGRVAAAALRGRHPGSDAAELRGLATDAAAGLIAEDPAYSRLAARLLTLTIGDEA 114 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 + Q A F + G L+ + F ++ A A Sbjct: 115 ------RSQGAVS----------FSASVAVGHTEGLIADRTAAFVALHSARLDALIDLDA 158 Query: 293 ---FEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346 F Y GL+ LY RY L I +E PQ F +RVA GLA +TE+ Y L+ Sbjct: 159 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVACGLAEDDTERALDEVAALYRLM 218 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+G + A L+K++GG+G ++ Sbjct: 219 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYGRYHQVARLSKHAGGIGLSYS 278 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+EEFL+L Sbjct: 279 RIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLEL 338 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+G EF+ AY Sbjct: 339 RDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFSPADVPELVDLWGDEFDAAY--- 395 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSN 583 R+A+ + R + A L+ +M+ L +TG+ W+TFKD N + Q + VHSSN Sbjct: 396 -RKAEAAGL-ARRTLPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTALPGHTVHSSN 453 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 LCTEI + ETAVCNLGS+NL A + D+++L +T+RTAV LD V+DIN + Sbjct: 454 LCTEILEVTDDGETAVCNLGSVNLGAFVSGGDIDWERLDATVRTAVTFLDRVVDINFYPT 513 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E+A +SN R +GLG MG Q L +P+ S EA ++ E I A AS +LA+ Sbjct: 514 EQAGRSNTKWRPVGLGAMGLQDVFFQLRLPFDSAEARALSTRIAERIMLAAYEASADLAE 573 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 G +++ + +GV D G+ + W L++RV T GMRNS Sbjct: 574 RHGPLPAWEKTRTARGVLHPDHYGVEQHWPER----------WAALRERVATTGMRNSLL 623 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV ELK+ +WD Sbjct: 624 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELKRLGVWDAQTREA 683 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 L+ GSI +PD++++++ TA+EI LI+ A+ R +IDQ+QSLNL+++ P+ Sbjct: 684 LRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAARTPYIDQSQSLNLFMETPTIG 743 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD-PNSSTHSLGIPS 942 KL +Y AW GLKTTYYLRSR AT + ++ VPV P + + Sbjct: 744 KLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGTAAAAPATVPVQQVPQDA-----VAC 798 Query: 943 SCTSDTECEVCQ 954 S + CE CQ Sbjct: 799 SLENPESCEACQ 810 >gi|271967541|ref|YP_003341737.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270510716|gb|ACZ88994.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 731 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 296/671 (44%), Positives = 408/671 (60%), Gaps = 42/671 (6%) Query: 290 DFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 D FEY GL+ +YDRY L +R +E PQ FF+RVA GL +E + A E Y L+S Sbjct: 97 DDRFEYFGLRTVYDRYLLRHPRTRQVLERPQHFFLRVACGL----SETVEEAAELYALMS 152 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + ++ S+PTLFNSG+R PQLSSCFL P D+L I+ + A L+KY+GG+G WT Sbjct: 153 TLSYLPSSPTLFNSGSRRPQLSSCFLLDSPRDELEAIYERYGQVARLSKYAGGIGIAWTR 212 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 VR G+ I GTNG S G++P+L+ + + AVNQGG+RKGA C YLE+WH DVEEFL+LR Sbjct: 213 VRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYLESWHADVEEFLELR 272 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 NTG++ RRTH++N ANWIPD FM+RV + W+LF P EV L DLYG FE AY E Sbjct: 273 DNTGEEARRTHNLNLANWIPDEFMRRVEADGVWSLFDPKEVPHLTDLYGAAFEEAYRAAE 332 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNL 584 + + ++I A +L+ +M+ L +TG+ W+TFKD N S Q + V+H SNL Sbjct: 333 AEG-----RYVKQIPARSLYGRMMRTLAQTGNGWMTFKDAANRTSNQTARPENVIHLSNL 387 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 CTEI ++ ETAVCNLGSINL AH D+ +L T+RTAVR LD ID+ + Sbjct: 388 CTEILEVTNDAETAVCNLGSINLAAHLDGRDVDWTRLRRTVRTAVRFLDRTIDLGFYPTP 447 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A +N R IGLG+MG L L +P+ SP+A+E++ E I+ A + S +LA E Sbjct: 448 EAGTANRKWRPIGLGVMGLADVLFALRLPFDSPQALELSTRISEEIALAAYATSSDLAVE 507 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNC 763 RG + S+ + GV D G +R P W L+ R+ G+RNS Sbjct: 508 RGRHPSYDDTRAAAGVLHPDHYG-------------AARSPEWAALRDRIAETGLRNSLM 554 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +AIAPTATIA+I G + I+P N++ + +SG+F VN +LV +L+ R LW + Sbjct: 555 IAIAPTATIASIAGCYECIEPQVSNIFKRETLSGEFLQVNRYLVRDLQARGLWTPQIRDA 614 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 +K DGS+ ++ +P+DLK ++ TA+E+ LI+ A+ R +IDQ+QSLNL++ P+ Sbjct: 615 IKRADGSVQDVPGMPEDLKSLYRTAWELPQKALIDLAAARTPYIDQSQSLNLFMATPTIG 674 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 KL +Y AW GLKTTYYLRSR AT + ++T+ AVP DP + SL P Sbjct: 675 KLSSMYAYAWKSGLKTTYYLRSRPATRIAQTTVA------QAVP--DPEAVACSLENPEY 726 Query: 944 CTSDTECEVCQ 954 C+ CQ Sbjct: 727 ------CDACQ 731 >gi|297157410|gb|ADI07122.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces bingchenggensis BCW-1] Length = 799 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 309/784 (39%), Positives = 450/784 (57%), Gaps = 39/784 (4%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVY 237 V + + + G ++L T ++ LI +EP Y+K+ AR L + E + Sbjct: 45 VAAAALRGRHPGSDAAELRTLATEAAAGLIAEEPEYSKLAARLLTLAIAEEAAGQGAVSF 104 Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297 H E L + ++ ARL ++++D L A+D F Y G Sbjct: 105 SSSVAVGHRE--GLIADGTAEFVTSHA-ARL--DALVDKALADGADD-------RFGYFG 152 Query: 298 LQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCS 354 L+ L+ RY L I IE PQ F +RVA GLA +++ V E Y L S+ ++ S Sbjct: 153 LRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDHSQRALDDVAELYRLTSTLSYLPS 212 Query: 355 TPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ Sbjct: 213 SPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHAGGIGLSYSRIRARGSL 272 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I GTNG S G++PFL+ + + AVNQGG+RKGA C YLETWH D+EEFL+LR NTG++ Sbjct: 273 IRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHADIEEFLELRDNTGEEA 332 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 RRTH++N A+WIPD FM+RV +A W+LFSP + L DL+G+EF+ AY E E Sbjct: 333 RRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGEEFDAAYTKAE-----AE 387 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLN 591 + + A L+ +M+ L +TG+ W+TFKD N + Q + VVHSSNLCTEI Sbjct: 388 GLAVKTVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAEPGRVVHSSNLCTEILEV 447 Query: 592 SSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 + ETAVCNLGS+NL AH + Q D+ +L +T+RTAV LD V+DIN + ++A SN Sbjct: 448 TDDGETAVCNLGSVNLAAHLGEDGQMDWARLDATVRTAVTFLDRVVDINFYPTQEAGASN 507 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R +GLGLMG Q L +P+ SPEA +++ + E I A AS LA+ G + + Sbjct: 508 SRWRPVGLGLMGLQDVFFRLRLPFDSPEAQQLSTQISERIMLAAYEASCALAERHGPHPA 567 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 + + +GV D D +A T W L++R+ GMRNS +AIAPTA Sbjct: 568 WSATRTARGVLHPD------HYTDAVA---TWPERWAALRERMAKSGMRNSLLLAIAPTA 618 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 TIA+I GV + I+P NL+ + +SG+F VNS+LVN+LK+ +WD L+ +GS Sbjct: 619 TIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKKLGVWDAQSREALRESNGS 678 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 + + +P ++++++ TA+E+ LI+ A+ R ++DQ+QSLNL++ P+ KL +Y Sbjct: 679 VQDFSWVPKEVRELYRTAWEVPQRALIDMAAARTPYLDQSQSLNLFMASPTIGKLSSMYA 738 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G+KTTYYLRSR AT + +S VP+ + I S + C Sbjct: 739 YAWKRGIKTTYYLRSRPATRIAQSARA---AAPATVPIPTQQAPVDPEVIACSLENPESC 795 Query: 951 EVCQ 954 E CQ Sbjct: 796 EACQ 799 >gi|297192179|ref|ZP_06909577.1| class Ia ribonucleotide-diphosphate reductase large subunit protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151244|gb|EDY64084.2| class Ia ribonucleotide-diphosphate reductase large subunit protein [Streptomyces pristinaespiralis ATCC 25486] Length = 800 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 311/791 (39%), Positives = 454/791 (57%), Gaps = 49/791 (6%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 L D V + + G ++L + ++ LI ++P Y+++ AR L + E Sbjct: 50 LPDTDPGKVAAAALRGRNAGSDAAELHSLATEAAAGLISEDPAYSRLAARLLTRTIAEEA 109 Query: 233 L---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 + + H E L + ++ LH + +D L+ L D + Sbjct: 110 AGQGASSFTASVATGHRE--GLIADRTAAFVA-------LHAARLDA-LIDLGADDR--- 156 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346 F Y GL+ LY RY L I IE PQ F +RVA GLA ++ + + Y L+ Sbjct: 157 ---FGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSPRALEEVAALYRLM 213 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+G + A L+K++GG+G ++ Sbjct: 214 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYGRYHQVARLSKHAGGIGLSYS 273 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+EEFL+L Sbjct: 274 RIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLEL 333 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V +L DL+G++F+ AY Sbjct: 334 RDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPVDVPELVDLWGEDFDAAY--- 390 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSN 583 R+A+ + R +SA L+ +M+ L +TG+ W+TFKD N + Q + VVHSSN Sbjct: 391 -RRAEAAGL-ARRTVSARDLYGRMMRTLAQTGNGWMTFKDASNRTANQTAEPGRVVHSSN 448 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 LCTEI + ETAVCNLGS+NL A + + D+++L +T+RTAV LD V+DIN + Sbjct: 449 LCTEILEVTDDGETAVCNLGSVNLGAFVSGDGIDWERLDATVRTAVTFLDRVVDINFYPT 508 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E+A +SN R +GLG MG Q L +P+ S EA ++ E I A AS +LA+ Sbjct: 509 EQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAEARALSTRIAERIMLAAYEASCDLAE 568 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 G ++ + +GV D + +N R W+ L+ RV +GMRNS Sbjct: 569 RNGPLPAWAETRTARGVLHPDHY--------DTTLNWPER--WEALRARVAAVGMRNSLL 618 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++LK+ +WD Sbjct: 619 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDAQTREA 678 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 L+ GS+ +P++++ ++ TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ Sbjct: 679 LREASGSVQGFTWVPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIG 738 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 KL +Y AW GLKTTYYLRSR AT + ++ V VT ++ SL P S Sbjct: 739 KLSSMYAYAWKQGLKTTYYLRSRPATRIARAASAAVPVPAQ---VTPEDAVACSLENPES 795 Query: 944 CTSDTECEVCQ 954 CE CQ Sbjct: 796 ------CEACQ 800 >gi|326776717|ref|ZP_08235982.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces cf. griseus XylebKG-1] gi|326657050|gb|EGE41896.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces cf. griseus XylebKG-1] Length = 804 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 310/770 (40%), Positives = 439/770 (57%), Gaps = 40/770 (5%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251 E++L + ++ LI ++P Y+++ AR L + E T + H E L Sbjct: 65 EAELRSLATEAAAGLISEDPAYSRLAARLLTRTIADEAAGQGATSFSASVAVGHRE--GL 122 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--I 309 + ++ LH + +D + L D F Y GL+ L+ RY L I Sbjct: 123 IADRTAAFVA-------LHATALD---QLVGQALTDGADDRFGYFGLRTLHSRYLLRHPI 172 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 IE PQ F +RVA GLA E+ + Y L+S ++ S+PTLFNSGTRHPQ+ Sbjct: 173 TRQVIETPQHFMLRVAAGLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQM 232 Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PF Sbjct: 233 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 292 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD Sbjct: 293 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 352 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546 FM+RV + W+LFSP +V +L DL+G F+ AY E + + RK + A L+ Sbjct: 353 EFMRRVDADTEWSLFSPADVPELVDLWGDAFDAAYRAAEAKG------LARKTMPARELY 406 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +M+ L +TG W+TFKD N + Q + VVHSSNLCTEI + ETAVCNLGS Sbjct: 407 GRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGS 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +NL A AN D+D+L +T+RTAV LD V+DIN + E+A SN R +GLG MG Q Sbjct: 467 VNLGAFVANGSIDWDRLDATVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQ 526 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ SPEA ++ + E I A AS +LA+ G ++ + +GV D Sbjct: 527 DVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSRTRAARGVLHPD 586 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +N R WD L+ RV GMRNS +AIAPTATIA+I GV + I+P Sbjct: 587 HYA--------TELNWPDR--WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEP 636 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NL+ + +SG+F VN++LV+ELK+ +WD L+ GS+ IP+D++ + Sbjct: 637 QVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRAL 696 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLR Sbjct: 697 YRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 756 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 SR AT + ++ +PV S+ + I S + CE CQ Sbjct: 757 SRPATRIARAASG-QASAAAPLPVQQ-ASAPDADAIACSLENPESCEACQ 804 >gi|294631327|ref|ZP_06709887.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. e14] gi|292834660|gb|EFF93009.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. e14] Length = 798 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 312/798 (39%), Positives = 451/798 (56%), Gaps = 48/798 (6%) Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 E + L D V + + E++L +S LI ++P Y+++ AR L Sbjct: 38 ELTADLPDADPGRVAAAALRGRSARADEAELRELATEASAGLISEDPAYSRLAARLLTLT 97 Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LAND 284 +R E + Q T F + G + L+ + +F ++ L Sbjct: 98 IRAEAAS------QGVTR----------FTESVAVGHREGLIADRTAEFVRLHAERLDAA 141 Query: 285 LKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-E 341 + D F Y GL+ L+ RY L I IE PQ F +RVA GLA T+ V Sbjct: 142 VDPAADDRFGYFGLRTLHSRYLLRHPITRKVIETPQHFMLRVASGLAQDATDHAVDEVTA 201 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+ Sbjct: 202 LYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGI 261 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+E Sbjct: 262 GIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIE 321 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL+LR NTG+D RRTH++N A+W+PD FM+RV + W+LFSP +V +L DL+G EF+ Sbjct: 322 EFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFSPSDVPELVDLWGAEFDA 381 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578 AY E +RG + + + A L+ +M+ L +TG+ W+TFKD N + Q + V Sbjct: 382 AYRAAE---ERGLAR--KTMPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHV 436 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +HSSNLCTEI + ETAVCNLGS+NL A + D+++L T+RTAV LD V+DI Sbjct: 437 IHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVRDGDIDWERLDETVRTAVTFLDRVVDI 496 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + E+A +SN R +GLG MG Q L +P+ S A ++ E I A AS Sbjct: 497 NFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAGARALSTRIAERIMLAAYEAS 556 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 +LA+ G +++ + +GV D ++++ R W L++R+ +GM Sbjct: 557 ADLAERHGPLPAWEKTRAARGVLHPDHY--------DVSLTWPER--WTALRERIAAVGM 606 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LVN+LK +WD Sbjct: 607 RNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKALGVWDA 666 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 L+ +GS+ + IP D++ ++ TA+EI LI+ A+ R ++DQAQSLNL+L+ Sbjct: 667 RTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPFLDQAQSLNLFLE 726 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST--LKGVDGKLNAVPVTDPNSSTH 936 P+ KL +Y AW GLKTTYYLRSR AT + ++ + L A DP++ Sbjct: 727 TPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAQGRTPAEAALPAQQTADPDAVAC 786 Query: 937 SLGIPSSCTSDTECEVCQ 954 SL P S CE CQ Sbjct: 787 SLENPES------CEACQ 798 >gi|7328344|emb|CAB82485.1| class I ribonucleotide-diphosphate reductase large subunit chain [Streptomyces coelicolor A3(2)] Length = 791 Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust. Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252 E++L ++ LI ++P Y+++ AR L +R E + V AT H + L Sbjct: 60 EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 118 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310 + ++ LH +D + A+D F Y GL+ LY RY L I Sbjct: 119 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 164 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 +E PQ F +RVA GLA +T + V Y L+S ++ S+PTLFNSGTRH Q+S Sbjct: 165 RKAVETPQHFLLRVAAGLAEDDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 224 Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L P D+L ++ L + A L+K++GG+G ++ VR G+ I GTNG S G++PFL Sbjct: 225 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 284 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K + + AVNQGG+RKGA YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD Sbjct: 285 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 344 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV + W+LFSP +V +L DL+G+EF+ AY R+A+ + R + A L+ + Sbjct: 345 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 399 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ L +TG+ W+TFKD N + Q VVHSSNLCTEI + ETAVCNLGS+N Sbjct: 400 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 459 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L A A+ D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 460 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 519 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ SPEA ++ E I A S +LA+ G +++ + +GV D Sbjct: 520 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPD 579 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 G+ + W L+ R+ T G+RNS +AIAPTATIA+I GV + I+P Sbjct: 580 HYGVEPAWPER----------WAALRARMATTGLRNSMLLAIAPTATIASIAGVYECIEP 629 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NL+ + +SG+F VNS+LV++LK+ +WD L+ +GS+ IP+D++ + Sbjct: 630 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 689 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + TA+EI LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLR Sbjct: 690 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 749 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 SR AT + ++ + + A P DP + SL P S CE CQ Sbjct: 750 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 791 >gi|307328556|ref|ZP_07607730.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces violaceusniger Tu 4113] gi|306885824|gb|EFN16836.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces violaceusniger Tu 4113] Length = 804 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 307/745 (41%), Positives = 437/745 (58%), Gaps = 44/745 (5%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 V + + + G E++L I ++ LI +EP Y+++ AR L + E Sbjct: 45 VAAAALRGRHPGSDEAELRGLAIEAAAGLIAEEPEYSRLAARLLALTITEEA------AG 98 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN-DLKYERDFA------F 293 Q A F ++ G + LL +S +F + A D ER A F Sbjct: 99 QGAVS----------FSTSVQVGHREGLLADSTAEFAAAHAARLDALVERALADGADKRF 148 Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFH 350 Y GL+ LY RY L I IE PQ F +RVA GLA +E+ V E Y L S+ Sbjct: 149 GYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALDDVAELYRLTSTLS 208 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ +R Sbjct: 209 YLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHAGGIGLSYSRIRA 268 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G+ I GTNG S G++PFL+ + + AVNQGG+RKGA C YLETWH D+EEFL+LR NT Sbjct: 269 RGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHADLEEFLELRDNT 328 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G++ RRTH++N A+WIPD FM+RV +A W+LFSP + L DL+G EF+ AY E Sbjct: 329 GEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGDEFDAAYRKAE--- 385 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTE 587 E + +++ A L+ +M+ L +TG+ W+TFKD N + Q + VVHSSNLCTE Sbjct: 386 --AEGRAVKQVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAEPGRVVHSSNLCTE 443 Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 I ++ ETAVCNLGS+NL AH + Q D+++L +T+ TAV LD V+DIN + ++A Sbjct: 444 ILEVTNDGETAVCNLGSVNLAAHLDEDGQVDWERLDATVHTAVTFLDRVVDINFYPTDEA 503 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 SN R +GLGLMG Q L +P+ SPEA ++ E I A AS ELA+ G Sbjct: 504 GASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKALSTRISERIMLAAYEASCELAERHG 563 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + ++ + +GV D D +A T W+ L+ R+ GMRNS +AI Sbjct: 564 PHPAWSETRTARGVLHPD------HYTDAVA---TWPERWEALRTRMAKSGMRNSLLLAI 614 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APTATIA+I GV + I+P NL+ + +SG+F VNS+LV++LK+ +WD L+ Sbjct: 615 APTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKKLGVWDAHTREALRE 674 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 +GS+ +P D++ ++ TA+EI LIE A+ R ++DQ+QSLNL++ P+ KL Sbjct: 675 SNGSVQEFSWVPADVRDLYRTAWEIPQRALIEMAAARTPYLDQSQSLNLFMASPTIGKLS 734 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSV 911 +Y AW G+KTTYYLRSR AT + Sbjct: 735 SMYAYAWKRGIKTTYYLRSRPATRI 759 >gi|21223594|ref|NP_629373.1| ribonucleotide-diphosphate reductase large chain [Streptomyces coelicolor A3(2)] gi|8546892|emb|CAB94611.1| ribonucleotide-diphosphate reductase large chain [Streptomyces coelicolor A3(2)] Length = 791 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252 E++L ++ LI ++P Y+++ AR L +R E + V AT H + L Sbjct: 60 EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 118 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310 + ++ LH +D + A+D F Y GL+ LY RY L I Sbjct: 119 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 164 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 +E PQ F +RVA GLA +T + V Y L+S ++ S+PTLFNSGTRH Q+S Sbjct: 165 RKAVETPQHFLLRVAAGLAEDDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 224 Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L P D+L ++ L + A L+K++GG+G ++ VR G+ I GTNG S G++PFL Sbjct: 225 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 284 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K + + AVNQGG+RKGA YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD Sbjct: 285 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 344 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV + W+LFSP +V +L DL+G+EF+ AY R+A+ + R + A L+ + Sbjct: 345 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 399 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ L +TG+ W+TFKD N + Q VVHSSNLCTEI + ETAVCNLGS+N Sbjct: 400 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 459 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L A A+ D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 460 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 519 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ SPEA ++ E I A S +LA+ G +++ + +GV D Sbjct: 520 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPD 579 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 G+ + W L+ R+ T G+RNS +AIAPTATIA+I GV + I+P Sbjct: 580 HYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEP 629 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NL+ + +SG+F VNS+LV++LK+ +WD L+ +GS+ IP+D++ + Sbjct: 630 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 689 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + TA+EI LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLR Sbjct: 690 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 749 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 SR AT + ++ + + A P DP + SL P S CE CQ Sbjct: 750 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 791 >gi|256785294|ref|ZP_05523725.1| ribonucleotide-diphosphate reductase large chain [Streptomyces lividans TK24] Length = 791 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252 E++L ++ LI ++P Y+++ AR L +R E + V AT H + L Sbjct: 60 EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 118 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310 + ++ LH +D + A+D F Y GL+ LY RY L I Sbjct: 119 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 164 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 +E PQ F +RVA GLA +T + V Y L+S ++ S+PTLFNSGTRH Q+S Sbjct: 165 RKAVETPQHFLLRVAAGLAEDDTLRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 224 Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L P D+L ++ L + A L+K++GG+G ++ VR G+ I GTNG S G++PFL Sbjct: 225 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 284 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K + + AVNQGG+RKGA YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD Sbjct: 285 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 344 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV + W+LFSP +V +L DL+G+EF+ AY R+A+ + R + A L+ + Sbjct: 345 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 399 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ L +TG+ W+TFKD N + Q VVHSSNLCTEI + ETAVCNLGS+N Sbjct: 400 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 459 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L A A+ D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 460 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 519 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ SPEA ++ E I A S +LA+ G +++ + +GV D Sbjct: 520 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTAKGVLHPD 579 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 G+ + W L+ R+ T G+RNS +AIAPTATIA+I GV + I+P Sbjct: 580 HYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEP 629 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NL+ + +SG+F VNS+LV++LK+ +WD L+ +GS+ IP+D++ + Sbjct: 630 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 689 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + TA+EI LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLR Sbjct: 690 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 749 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 SR AT + ++ + + A P DP + SL P S CE CQ Sbjct: 750 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 791 >gi|289769188|ref|ZP_06528566.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces lividans TK24] gi|289699387|gb|EFD66816.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces lividans TK24] Length = 794 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252 E++L ++ LI ++P Y+++ AR L +R E + V AT H + L Sbjct: 63 EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 121 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310 + ++ LH +D + A+D F Y GL+ LY RY L I Sbjct: 122 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 167 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 +E PQ F +RVA GLA +T + V Y L+S ++ S+PTLFNSGTRH Q+S Sbjct: 168 RKAVETPQHFLLRVAAGLAEDDTLRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 227 Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L P D+L ++ L + A L+K++GG+G ++ VR G+ I GTNG S G++PFL Sbjct: 228 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 287 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K + + AVNQGG+RKGA YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD Sbjct: 288 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 347 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV + W+LFSP +V +L DL+G+EF+ AY R+A+ + R + A L+ + Sbjct: 348 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 402 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ L +TG+ W+TFKD N + Q VVHSSNLCTEI + ETAVCNLGS+N Sbjct: 403 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 462 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L A A+ D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 463 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 522 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ SPEA ++ E I A S +LA+ G +++ + +GV D Sbjct: 523 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTAKGVLHPD 582 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 G+ + W L+ R+ T G+RNS +AIAPTATIA+I GV + I+P Sbjct: 583 HYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEP 632 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NL+ + +SG+F VNS+LV++LK+ +WD L+ +GS+ IP+D++ + Sbjct: 633 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 692 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + TA+EI LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLR Sbjct: 693 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 752 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 SR AT + ++ + + A P DP + SL P S CE CQ Sbjct: 753 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 794 >gi|297202282|ref|ZP_06919679.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sviceus ATCC 29083] gi|197710198|gb|EDY54232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sviceus ATCC 29083] Length = 796 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 309/763 (40%), Positives = 436/763 (57%), Gaps = 58/763 (7%) Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 LI ++P Y+++ AR L + E + Q T F + G + L Sbjct: 75 LISEDPAYSRLAARLLTVSIAAEAAS------QGVTS----------FTGSVAVGHREGL 118 Query: 269 LHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323 + + +F V+ L + E D F Y GL+ LY RY L I IE PQ F +R Sbjct: 119 IADRTAEFVRVHAERLDALVDTEADDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLR 178 Query: 324 VAMGLA---LKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 VA GLA + ++E A++ Y L+S ++ S+PTLFNSGTRHPQ+SSC+L Sbjct: 179 VASGLADDTVLDSETGAHALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDS 238 Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + + Sbjct: 239 PKDELDSIYDRYHQVANLSKHAGGIGISYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASV 298 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV Sbjct: 299 AAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNA 358 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +A W+LFSP +V +L DL+G+EF+ AY E E R I A L+ +M+ L + Sbjct: 359 DAEWSLFSPADVPELVDLWGEEFDAAYRKAE-----AEGLARRTIPARDLYGRMMRTLAQ 413 Query: 556 TGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611 TG+ W+TFKD N + Q + VHSSNLCTEI + ETAVCNLGS+NL A Sbjct: 414 TGNGWMTFKDAANRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDT 473 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q L Sbjct: 474 TSGDIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLR 533 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +P+ SPEA ++ E I A AS +LA+ G +++ + QGV D Sbjct: 534 LPFDSPEARALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTAQGVLHPDHYAT--- 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +LA W L++R+ G+RNS +AIAPTATIA+I GV + I+P NL+ Sbjct: 591 ---DLAWPER----WAALRERMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFK 643 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VNS+LV ELK+ +WD L+ +GS+ IP+D++ ++ TA+EI Sbjct: 644 RETLSGEFLQVNSYLVAELKKLGVWDARTREALREANGSVQGFAWIPEDVRALYRTAWEI 703 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + Sbjct: 704 PQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRI 763 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 ++ VPV P + S + CE CQ Sbjct: 764 ARAAQA-------TVPVQQPAPED---AVACSLENPESCEACQ 796 >gi|320008646|gb|ADW03496.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces flavogriseus ATCC 33331] Length = 797 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 304/773 (39%), Positives = 441/773 (57%), Gaps = 47/773 (6%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 E++L + ++ LI ++P+Y+++ AR L +A E Sbjct: 59 EAELRSLATEAAAGLISEDPSYSRLAARLL----------------TRAVADEAAGQGAV 102 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLAN-DLKYERDFA------FEYLGLQILYDRYFL 307 F + G + L+ + +F ++ A D +R A F Y GL+ L+ RY L Sbjct: 103 SFSASVAVGHREGLIADRTAEFVTLHAAALDALVDRALADGADDRFGYFGLRTLHSRYLL 162 Query: 308 HINGSR--IEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 +R E PQ F +RVA GLA +E+ + Y L++ ++ S+PTLFNSGTR Sbjct: 163 RHPLTRQVTETPQHFMLRVAAGLAEDTSERALEEVAALYGLMNRLDYLPSSPTLFNSGTR 222 Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 HPQ+SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G Sbjct: 223 HPQMSSCYLLDSPMDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNG 282 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 ++PFLK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+ Sbjct: 283 IVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAH 342 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPD FM+RV + W+LFSP + +L DL+G EF+ AY E + R + A Sbjct: 343 WIPDEFMRRVDADTQWSLFSPADAPELVDLWGDEFDAAYRAAEAKG-----LARRTLPAR 397 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCN 601 L+ +M+ L +TG W+TFKD N + Q + VVHSSNLCTEI + ETAVCN Sbjct: 398 ELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCN 457 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NL A A D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG M Sbjct: 458 LGSVNLGAFVAEGTIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAM 517 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G Q L +P+ SPEA ++ + E I A AS +LA+ G ++ + +GV Sbjct: 518 GLQDVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVL 577 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D + ++ R WD L+ RV GMRNS +AIAPTATIA+I GV + Sbjct: 578 HPDHY--------DTELHWPER--WDALRARVARTGMRNSLLLAIAPTATIASIAGVYEC 627 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P NL+ + +SG+F VN++LV+ELK+ +WD L+ GS+ IP+D+ Sbjct: 628 IEPQVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDV 687 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 + ++ TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTY Sbjct: 688 RALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTY 747 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 YLRSR AT + ++ VPV S+ + + S + CE CQ Sbjct: 748 YLRSRPATRIARAASGQAPAAAT-VPVQ--ASAPDADALACSLENPESCEACQ 797 >gi|239929011|ref|ZP_04685964.1| ribonucleotide-diphosphate reductase large chain [Streptomyces ghanaensis ATCC 14672] gi|291437352|ref|ZP_06576742.1| class Ia ribonucleotide-diphosphate reductase large subunit chain [Streptomyces ghanaensis ATCC 14672] gi|291340247|gb|EFE67203.1| class Ia ribonucleotide-diphosphate reductase large subunit chain [Streptomyces ghanaensis ATCC 14672] Length = 793 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 310/801 (38%), Positives = 453/801 (56%), Gaps = 48/801 (5%) Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225 + E + L D V + + E++L ++ LI ++P Y+++ AR L Sbjct: 29 LTELTADLPDADPGRVAAAALRGRSARADETELRELATEAAAGLISEDPAYSRLAARLLA 88 Query: 226 EKLRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282 +R E + T + H E L + ++ LH +D + A Sbjct: 89 IGIRAEAASQGVTSFTGSVATGHRE--GLIADRTAAFVR-------LHADRLDALIDTGA 139 Query: 283 NDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +D F Y GL+ L+ RY L I +E PQ F +RVA GLA ++ + V Sbjct: 140 DD-------RFGYFGLRTLHSRYLLRHPITRKVVETPQHFLLRVAAGLAEDDSVRSVDEV 192 Query: 341 E-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSG 398 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++G Sbjct: 193 AALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHAG 252 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D Sbjct: 253 GIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSD 312 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 +EEFL+LR NTG+D RRTH++N A+W+PD FM+RV + W+LFSP +V +L DL+G+EF Sbjct: 313 IEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFSPADVPELVDLWGEEF 372 Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 + Y E E + RK + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 373 DAVYRAAE------EKGLARKTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTATP 426 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLD 633 V+HSSNLCTEI + ETAVCNLGS+NL A A D+++L T+RTAV LD Sbjct: 427 GHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDRTVRTAVTFLD 486 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 487 RVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEARTLSTRIAERIMLA 546 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A AS +LA+++G +++ + +GV D ++ + R W L+ R+ Sbjct: 547 AYEASADLAEDKGPLPAWEKTRTARGVLHPDHY--------DVDLTWPER--WVALRGRI 596 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 + G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++LK+ Sbjct: 597 ASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVSDLKRL 656 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +WDE L+ GS+ IPDD+++++ TA+EI LI++A+ R ++DQAQSL Sbjct: 657 GVWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAARTPFLDQAQSL 716 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 NL+++ P+ KL +Y AW GLKTTYYLRSR AT + ++ VPV P Sbjct: 717 NLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAQA-QPQAQTTVPVQQP-- 773 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 T + S + CE CQ Sbjct: 774 -TPDEAVACSLENPESCEACQ 793 >gi|282861025|ref|ZP_06270090.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. ACTE] gi|282563683|gb|EFB69220.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. ACTE] Length = 803 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 307/772 (39%), Positives = 437/772 (56%), Gaps = 45/772 (5%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251 E++L + ++ LI ++P Y+++ AR L + E T + H E L Sbjct: 65 EAELRSLATEAAAGLISEDPAYSRLAARLLTLTIADEAAGQGATSFSASVAVGHRE--GL 122 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 + ++E+ H ++D + L D F Y GL+ L+ RY L Sbjct: 123 IADRTAAFVEQ-------HAQVLD---ALVERTLADGADDRFGYFGLRTLHSRYLLRHPH 172 Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +R IE PQ F +RVA GLA E+ + + V Y L+S ++ S+PTLFNSGTRHPQ+ Sbjct: 173 TRQVIETPQHFMLRVAAGLAEDESVRARDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQM 232 Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PF Sbjct: 233 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 292 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD Sbjct: 293 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 352 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FM+RV + W+LFSP +V +L DL+G F+ AY E RG + + + A L+ Sbjct: 353 EFMRRVDADTEWSLFSPADVPELTDLWGDAFDAAYRAAE---ARGLAR--KTMPARELYG 407 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +M+ L +TG W+TFKD N + Q + VVHSSNLCTEI + ETAVCNLGS+ Sbjct: 408 RMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSV 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D+++L +T+RTAV LD V+DIN + E+A SN R +GLG MG Q Sbjct: 468 NLGAFVSGGSIDWERLDATVRTAVTFLDRVVDINFYPTEQAGTSNARWRPVGLGAMGLQD 527 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L +P+ SPEA ++ E I A AS +LA+ G ++ + +GV D Sbjct: 528 VFFQLRLPFDSPEARALSTRISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDH 587 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +N R WD L+ R+ GMRNS +AIAPTATIA+I GV + I+P Sbjct: 588 YA--------TELNWPER--WDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQ 637 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 NL+ + +SG+F VN +LV ELK+ +WD L+ GS+ IP+D++ ++ Sbjct: 638 VSNLFKRETLSGEFLQVNGYLVEELKKLGVWDARTREALREASGSVQGFGWIPEDVRALY 697 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLRS Sbjct: 698 RTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 757 Query: 906 RSATSVEKST---LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 R AT + ++ D ++ SL P S CE CQ Sbjct: 758 RPATRIARAASGRTASAALPAQQAQAPDADAIACSLENPES------CEACQ 803 >gi|302536806|ref|ZP_07289148.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. C] gi|302445701|gb|EFL17517.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. C] Length = 798 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 318/829 (38%), Positives = 456/829 (55%), Gaps = 47/829 (5%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 AP AP+ + + D T L + E + L D V + + E++L Sbjct: 4 APSAPRAESVSGDTT--EGPGAALLRTLTELTADLPDTDPGRVAAAALRGRSASADEAEL 61 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 ++ LI ++P Y+++ AR L + E Q AT F Sbjct: 62 RGLATEAAAGLISEDPAYSRLAARLLTLAVADEA------AGQGATS----------FAE 105 Query: 259 YIEEGVKARLLHESMMDFDLVYLA-------NDLKYERDFAFEYLGLQILYDRYFLH--I 309 + G + L+ + +F + A + L D F + GL+ L+ RY L I Sbjct: 106 SVAVGHREGLIADRTAEFVAAHAARLDALVEHALAEGADDRFGFFGLRTLHSRYLLRHPI 165 Query: 310 NGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 IE PQ F +RVA GLA ++ + + Y L+S ++ S+PTLFNSGTRHPQ+ Sbjct: 166 TRQVIETPQYFMLRVACGLAEDDSVQAVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQM 225 Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC+L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PF Sbjct: 226 SSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 285 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD Sbjct: 286 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 345 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FM+RV +A W+LFSP +V +L DLYG EF+ AY E G K + + A L+ Sbjct: 346 EFMRRVNADADWSLFSPADVPELVDLYGDEFDAAYVKAEAA---GLAK--KTMPARDLYG 400 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +M+ L +TG W+TFKD N + Q + VVHSSNLCTEI ++ ETAVCNLGS+ Sbjct: 401 RMMRTLAQTGQGWMTFKDASNRTANQTALPGTVVHSSNLCTEIIEVTNDGETAVCNLGSV 460 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A A+ + D+ +L T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 461 NLGAFVADGEMDWARLDETVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQD 520 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L +P+ S EA ++ + E I A AS +LA+ G ++ + QGV D Sbjct: 521 VFFKLRLPFDSAEAKALSTKISERIMLAAYEASCDLAERSGPLPAWAETRTAQGVLHPDH 580 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 E + R WD L+ R+ GMRNS +AIAPTATIA+I GV + I+P Sbjct: 581 Y--------ETERHWPER--WDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQ 630 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 NL+ + +SG+F VN +LV +LKQ +WD L+ GS+ IP ++++++ Sbjct: 631 VSNLFKRETLSGEFLQVNGYLVEDLKQLGVWDAQTREALRESSGSVQGFGWIPAEIRELY 690 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLRS Sbjct: 691 RTAWEIPQRGLIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 750 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 R AT + ++ A P P + + + S + CE CQ Sbjct: 751 RPATKIARAASGAAAVPAAATPAQLPQ-ALDAEALACSLENPESCEACQ 798 >gi|302558497|ref|ZP_07310839.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces griseoflavus Tu4000] gi|302476115|gb|EFL39208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces griseoflavus Tu4000] Length = 796 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 314/801 (39%), Positives = 448/801 (55%), Gaps = 57/801 (7%) Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 E + L D V + + E++L ++ LI ++P Y+++ AR L Sbjct: 39 ELTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAARLLTIG 98 Query: 228 LRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +R E + T + H E L + ++ LH +D + A+D Sbjct: 99 IRAEAASQGVTSFTGSVATGHRE--GLIADRTAAFVR-------LHAERLDALVDTRADD 149 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE- 341 F Y GL+ L+ RY L +R +E PQ F +RVA GLA + + V Sbjct: 150 -------RFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVAAGLAEDDGARSVDEVAA 202 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+ Sbjct: 203 LYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGI 262 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+E Sbjct: 263 GLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIE 322 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL+LR NTG+D RRTH++N A+W+PD FM+RV +A W+LFSP +V L DL+G+EF+ Sbjct: 323 EFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFSPADVPGLVDLWGEEFDA 382 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578 AY E Q R + A L+ +M+ L +TG+ W+TFKD N + Q + V Sbjct: 383 AYRAAEAQG-----LARRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQTAEPGHV 437 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636 VHSSNLCTEI + ETAVCNLGS+NL A A D+++L T+RTAV LD V+ Sbjct: 438 VHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQAAGDLDWERLDETVRTAVTFLDRVV 497 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + E+A +SN R +GLG MG Q L L +P+ SPEA ++ E I A Sbjct: 498 DINYYPTEQAGRSNARWRPVGLGAMGLQDVLFRLRLPFDSPEAKALSTRIAERIMLAAYE 557 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA+ G +++ + +GV D + + R W L+ R+ + Sbjct: 558 TSADLAERSGPLPAWEKTRTARGVLHPDHY--------DTELTWPER--WAALRARIAAV 607 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GMRNS +AIAPTATIA+I G + I+P NL+ + +SG+F VNS+LV +LK+ +W Sbjct: 608 GMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLKRLGVW 667 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 D L+ GS+ + IP+D+++++ TA+EI LI+ A+ R ++DQAQSLNL+ Sbjct: 668 DARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQAQSLNLF 727 Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV---TDPNS 933 L+ P+ KL +Y AW GLKTTYYLRSR AT + ++ VPV DP + Sbjct: 728 LETPTIGKLSSMYVHAWKQGLKTTYYLRSRPATRIARAA------ARTTVPVQAGPDPEA 781 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 SL P S CE CQ Sbjct: 782 VACSLENPES------CEACQ 796 >gi|126662514|ref|ZP_01733513.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria bacterium BAL38] gi|126625893|gb|EAZ96582.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria bacterium BAL38] Length = 810 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 452/762 (59%), Gaps = 41/762 (5%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 +++ C GL D+ + V + +YDG++ S+L+ ++ ++ P+YA++ AR Sbjct: 22 IKKLCYGLNDMVDAVKVAMRVIEGLYDGVTTSELDNLAAETAASMTVSHPDYAQLAARIA 81 Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277 + L + E + +Y T+ E + E + E +KA + Sbjct: 82 ISNLHKNTNKSFSETMNEMYHYVNPRTNQEAPLISDEVY-----EVIKA----------N 126 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 +L + + Y RDF ++Y G + L Y L ING +E PQ MRV++G+ + + E Sbjct: 127 AEFLDSHIIYTRDFNYDYFGFKTLERSYLLRINGKIVERPQHMLMRVSVGIHMNDLEA-- 184 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396 +E Y+L+S F +TPTLFN+GT PQ+SSCFL T+ DD + GI+ L++ A +++ Sbjct: 185 -VIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQS 243 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ YLETW Sbjct: 244 AGGIGLAIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYLETW 303 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFLDL+KNTG + R D+ A W DLFMKRV ++A WTL P+E DL ++YG Sbjct: 304 HADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTLMCPNECPDLDNVYG 363 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 EFE Y +YE + K + I A LW K+L ETG P++ +KD N +S Q++ Sbjct: 364 DEFEALYTSYEAKG-----KGRKTIRARELWEKILESQIETGTPYMLYKDAANRKSNQKN 418 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +G + SSNLCTEI +S +E AVCNL SI+L N +F+++ L + + R L+ V Sbjct: 419 LGTIRSSNLCTEIMEYTSPDEIAVCNLASISLPMFVENGKFNHELLFTVTKRVTRNLNKV 478 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + +++A+ SN HR +GLG+ G A ++ +P+ S EA ++ E E + F A+ Sbjct: 479 IDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMMRLPFTSDEAKKVNQEIFETLYFAAV 538 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS+E+A+E G YS+F+GS +G F + L ++DE + R W L+K V Sbjct: 539 TASMEMAKEEGPYSTFEGSPISKGEFQHN----LWNIKDE---ELSGRWDWASLRKEVMA 591 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+++L R L Sbjct: 592 NGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHDLVDRGL 651 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E + ++ H+GS+ +I+RIP DLK+++ T +E+ +I+ + +R +IDQ+QSLNL Sbjct: 652 WNETLKQEIMRHNGSVQHIDRIPADLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSLNL 711 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ + + KL ++ AW GLKT YYLR+++A K TL Sbjct: 712 FMQDANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTL 753 >gi|239982207|ref|ZP_04704731.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces albus J1074] gi|291454053|ref|ZP_06593443.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces albus J1074] gi|291357002|gb|EFE83904.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces albus J1074] Length = 791 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 304/791 (38%), Positives = 441/791 (55%), Gaps = 44/791 (5%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 L D V + + E++L + ++ LI ++P Y+++ AR L + E Sbjct: 36 LPDTDPGRVAAAALRGRNAASDEAELRSLATEAAAGLISEDPAYSRLAARLLTRTIAEEA 95 Query: 233 L---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 T + + H E L + ++ H +D LV A D + Sbjct: 96 AGQGVTTFTESVATGHRE--GLIADRTAAFVTA-------HAERLDA-LVDPAADDR--- 142 Query: 290 DFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346 F Y GL+ ++ RY L +R IE PQ F +RVA GLA ++ + Y L+ Sbjct: 143 ---FGYFGLRTVHSRYLLRHPHTRQVIETPQHFMLRVACGLAEDDSARALDEVASLYRLM 199 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S+ ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ Sbjct: 200 SALSYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELESIYDRYHQVARLSKHAGGIGLAYS 259 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I GTNG S G++PFL + + AVNQGG+RKGA YLETWH DVEEFL+L Sbjct: 260 RIRARGSLIRGTNGHSNGIVPFLNTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLEL 319 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG++ RRTH++N A+WIPD FM+RV +A W+LFSP +V +L DL+G F+ AY Sbjct: 320 RDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFSPSDVPELTDLWGDAFDAAYRAA 379 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSN 583 E RG + R I A L+ +M+ L +TG+ W+TFKD N + Q + VHSSN Sbjct: 380 EA---RGLAR--RTIPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTALPGHTVHSSN 434 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 LCTEI + ETAVCNLGS+NL A D+++L +RTAV LD V+DIN + Sbjct: 435 LCTEILEVTDDGETAVCNLGSVNLGAFVDGGAIDWERLDEAVRTAVVFLDRVVDINFYPT 494 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E+A++SN R +GLG MG Q L +P+ SPEA ++ E I A S +LA+ Sbjct: 495 EQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAE 554 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 + G ++ + QGV D +LA W+ L+ RV GMRN+ Sbjct: 555 KNGPLPNWDRTRTAQGVLHPD------HYDTDLAWPER----WEALRARVAESGMRNALL 604 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV +LK+ +WD Sbjct: 605 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLKRLGVWDARTREA 664 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 L+ GS+ IP++L+ ++ TA+E+ LI+ A+ R ++DQ+QSLNL+++ P+ Sbjct: 665 LREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTPFLDQSQSLNLFMETPTIG 724 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 KL +Y AW GLKTTYYLRSR AT + ++ G A ++ + I S Sbjct: 725 KLSSMYAYAWKKGLKTTYYLRSRPATRIARA----AGGSAPATATVPAQAAPDAEAIACS 780 Query: 944 CTSDTECEVCQ 954 + CE CQ Sbjct: 781 LENPESCEACQ 791 >gi|295836583|ref|ZP_06823516.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB74] gi|197697283|gb|EDY44216.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB74] Length = 790 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 305/798 (38%), Positives = 442/798 (55%), Gaps = 47/798 (5%) Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 E + L D V + + E++L ++ LI ++P Y+++ AR L Sbjct: 29 ELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISEDPAYSRLAARLLAIG 88 Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND--- 284 + E Q A+ F + G + L+ + +F + A Sbjct: 89 IVAEAAG------QGASG----------FAASVAVGHREGLIGDRTAEFVATHAARLDAL 132 Query: 285 LKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVE 341 + E D F Y GL+ LY RY L I IE PQ F +RVA GLA ++ Sbjct: 133 IDPEGDDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVAAGLAADDSLPAVDEVAS 192 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+ Sbjct: 193 LYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGI 252 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+E Sbjct: 253 GIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIE 312 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL+LR NTG+D+RRTH +N A+WIPD FM+RV + W+LFSP +V +L DL+G+EFE Sbjct: 313 EFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFSPADVPELTDLWGEEFEA 372 Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVG 577 AY E + + RK + A L+ +M+ L +TG W+TFKD N + Q + Sbjct: 373 AYRAAEAKG------LARKTMPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGS 426 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 VVHSSNLCTEI + ETAVCNLGSINL A N + D+++L T+RTAV LD V+D Sbjct: 427 VVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVENGEIDWERLDETVRTAVTFLDRVVD 486 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + +A SN R +GLG MG Q L +P+ S A ++ E I A A Sbjct: 487 INFYPTGQAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAAAKAVSTRIAERIMLAAYEA 546 Query: 698 SVELAQERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA++ G +++ + +GV P D + RT W+ L+ R+ Sbjct: 547 SADLAEKHGPVPAWEKTRTARGVLHP-----------DHFDVERTWPERWEALRARIAKT 595 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GMRNS +AIAPTATIA+I GV + ++P NL+ + +SG+F VN +LV +LK+ +W Sbjct: 596 GMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVW 655 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 D L+ +GS+ IP+D++ ++ TA+E+ LI+ A+ R ++DQ+QSLNL+ Sbjct: 656 DARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLF 715 Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 ++ P+ KL +Y AW GLKTTYYLRSR AT + ++ + P+ + Sbjct: 716 METPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGS---SAAASAPIPVQQAVPD 772 Query: 937 SLGIPSSCTSDTECEVCQ 954 + I S + CE CQ Sbjct: 773 ADAIACSLENPESCEACQ 790 >gi|302521844|ref|ZP_07274186.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB78] gi|302430739|gb|EFL02555.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB78] Length = 790 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 286/673 (42%), Positives = 401/673 (59%), Gaps = 28/673 (4%) Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLL 346 D F Y GL+ LY RY L I +E PQ F +RVA GLA ++ Y L+ Sbjct: 138 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVDEVASLYRLM 197 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ Sbjct: 198 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGIGIAYS 257 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+EEFL+L Sbjct: 258 RIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIEEFLEL 317 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG+D+RRTH +N A+WIPD FM+RV +A W+LFSP +V +L DL+G+EFE AY Sbjct: 318 RDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGEEFEAAYRAA 377 Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582 E + + RK I A L+ +M+ L +TG W+TFKD N + Q + VVHSS Sbjct: 378 EAKG------LARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGSVVHSS 431 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLCTEI + ETAVCNLGSINL A N D+++L T+RTAV LD V+DIN + Sbjct: 432 NLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDRVVDINFYP 491 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 ++A SN R +GLG MG Q L +P+ S EA ++ E I A AS +LA Sbjct: 492 TDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASADLA 551 Query: 703 QERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 ++ G +++ + +GV P D + RT W+ L+ R+ GMRNS Sbjct: 552 EKHGPVPAWEKTRTARGVLHP-----------DHYDVERTWPERWEALRARIARSGMRNS 600 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPTATIA+I GV + ++P NL+ + +SG+F VN +LV +LK+ +WD Sbjct: 601 LLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVWDARTR 660 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 L+ +GS+ IP++++ ++ TA+E+ LI+ A+ R ++DQ+QSLNL+++ P+ Sbjct: 661 EALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLFMETPT 720 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 KL +Y AW GLKTTYYLRSR AT + ++ A P+ S + I Sbjct: 721 IGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGS---PAAEAAPIPVQQSVPDAEAIA 777 Query: 942 SSCTSDTECEVCQ 954 S + CE CQ Sbjct: 778 CSLENPESCEACQ 790 >gi|318060205|ref|ZP_07978928.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SA3_actG] gi|318077112|ref|ZP_07984444.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SA3_actF] Length = 767 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 286/673 (42%), Positives = 401/673 (59%), Gaps = 28/673 (4%) Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLL 346 D F Y GL+ LY RY L I +E PQ F +RVA GLA ++ Y L+ Sbjct: 115 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVDEVASLYRLM 174 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ Sbjct: 175 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGIGIAYS 234 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+EEFL+L Sbjct: 235 RIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIEEFLEL 294 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG+D+RRTH +N A+WIPD FM+RV +A W+LFSP +V +L DL+G+EFE AY Sbjct: 295 RDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGEEFEAAYRAA 354 Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582 E + + RK I A L+ +M+ L +TG W+TFKD N + Q + VVHSS Sbjct: 355 EAKG------LARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGSVVHSS 408 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLCTEI + ETAVCNLGSINL A N D+++L T+RTAV LD V+DIN + Sbjct: 409 NLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDRVVDINFYP 468 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 ++A SN R +GLG MG Q L +P+ S EA ++ E I A AS +LA Sbjct: 469 TDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASADLA 528 Query: 703 QERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 ++ G +++ + +GV P D + RT W+ L+ R+ GMRNS Sbjct: 529 EKHGPVPAWEKTRTARGVLHP-----------DHYDVERTWPERWEALRARIARSGMRNS 577 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPTATIA+I GV + ++P NL+ + +SG+F VN +LV +LK+ +WD Sbjct: 578 LLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVWDARTR 637 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 L+ +GS+ IP++++ ++ TA+E+ LI+ A+ R ++DQ+QSLNL+++ P+ Sbjct: 638 EALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLFMETPT 697 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 KL +Y AW GLKTTYYLRSR AT + ++ A P+ S + I Sbjct: 698 IGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGS---PAAEAAPIPVQQSVPDAEAIA 754 Query: 942 SSCTSDTECEVCQ 954 S + CE CQ Sbjct: 755 CSLENPESCEACQ 767 >gi|328884924|emb|CCA58163.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit [Streptomyces venezuelae ATCC 10712] Length = 792 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 295/743 (39%), Positives = 432/743 (58%), Gaps = 40/743 (5%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 L D V + + E++L ++ LI ++P Y+++ AR L Sbjct: 36 LPDTDPGKVAAAALRGRSAAADEAELRELATEAAAGLIAEDPAYSRLAARLL-------- 87 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYER 289 TV + A F + G + L+ + +F ++ L + Sbjct: 88 --TVTIADEAAGQGAFS------FSASVAVGHREGLIADRTAEFVALHADRLDATIDPAG 139 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLL 346 D F Y GL+ LY RY L I IE PQ F +RVA GLA ++ + V Y L+ Sbjct: 140 DDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLRVACGLAEDDSVRALDEVSALYGLM 199 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ Sbjct: 200 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGIGLSYS 259 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+EEFL+L Sbjct: 260 RIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLEL 319 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V +L DL+G+EF+ AY Sbjct: 320 RDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLWGEEFDAAY--- 376 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSN 583 R+A+ + + + A L+ +M+ L +TG+ W+TFKD N + Q + VHSSN Sbjct: 377 -RKAEAAGL-ARKTMPARDLYGRMMRTLAQTGNGWMTFKDASNRTANQTAEPGHTVHSSN 434 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 LCTEI + ETAVCNLGS+NL A + D+++L +T+RTAV LD V+DIN + Sbjct: 435 LCTEILEVTDDGETAVCNLGSVNLGAFVVGSDIDWERLDATVRTAVTFLDRVVDINFYPT 494 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E+A +SN R +GLG MG Q L +P+ S EA ++ E I A AS +LA+ Sbjct: 495 EQAGRSNARWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRIAERIMLAAYEASADLAE 554 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 G +++ + +GV D ++ +N R W L++R+ +GMRNS Sbjct: 555 RNGPLPAWEKTRTARGVLHPDHY--------DVELNWPER--WAALRERIAAVGMRNSLL 604 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV+ELK+ +WD Sbjct: 605 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKKLGVWDAQTREA 664 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 L+ +GS+ +P ++++++ TA+EI LI+ A+ R ++DQ+QSLNL+L+ P+ Sbjct: 665 LRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIG 724 Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906 KL +Y AW GLKTTYYLRSR Sbjct: 725 KLSSMYAYAWKQGLKTTYYLRSR 747 >gi|124003381|ref|ZP_01688231.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla marina ATCC 23134] gi|123991479|gb|EAY30910.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla marina ATCC 23134] Length = 808 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 305/798 (38%), Positives = 459/798 (57%), Gaps = 55/798 (6%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 V + +YDG++ +L+ ++ T+ K P+YA + AR ++ ++K Sbjct: 39 VAKKVITGIYDGVTTIELDNLAAETAATMAIKHPDYAILAARI--------AISNLHKTT 90 Query: 241 QKATHHEMQCLYPEYFCRYIE--EGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEY 295 K M+ LY YI+ G KA L+ + + + + L + + Y+RD+ ++Y Sbjct: 91 SKVFSKTMKELY-----EYIDPKTGEKAGLISDETHAAIQKNAAVLDSSIIYDRDYNYDY 145 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + L Y L ++G +E PQ MRVA+G+ ++ +K +E Y LLS F +T Sbjct: 146 FGFKTLERSYLLKMDGQVVERPQHMLMRVAVGIHGEDVDK---VLETYELLSGKWFTHAT 202 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFN+GT PQLSSCFL T+ DD + GI+ L++ A +++ +GG+G VR G++I Sbjct: 203 PTLFNAGTPKPQLSSCFLLTMQDDSIEGIYDTLKQCAKISQSAGGIGLSIHNVRATGSYI 262 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S GVIP LKV NDTA V+QGG KRKGA YLE WH D+ EFLDL+KN G + Sbjct: 263 KGTNGTSNGVIPMLKVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLKKNHGKEE 322 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A W+ DLFMKRV + W+LF P+E LH++YG+EFE YE YE + Sbjct: 323 LRARDLFYAMWLSDLFMKRVENDDTWSLFCPNEAPGLHEVYGEEFEKLYEQYELEG---- 378 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 + + I A LW K+L ETG P++ +KD N +S Q+++G + SSNLCTEI +S Sbjct: 379 -RARKVIKAQDLWFKILESQIETGTPYMLYKDAANEKSNQKNLGTIKSSNLCTEIMEYTS 437 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 +E AVCNL SI L + +FD+ KL + R L+ +IDIN + +++A+ SN H Sbjct: 438 KDEVAVCNLASIALPKFVIDGKFDHQKLYEVTQVVTRNLNRIIDINYYPVKEAENSNLRH 497 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G+ G +L +P+ S EA + + E I F +++AS+ELAQ+ GAY S+KG Sbjct: 498 RPIGIGVQGLADTFMMLRMPFDSEEAKGLNKDIFETIYFASMTASMELAQKEGAYESYKG 557 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S +G+F D G+ E + R W L+K VK G RNS +A PTA+ + Sbjct: 558 SPVSEGIFQFDMWGVKPE---------SGRWDWQALRKDVKKHGARNSLLLAPMPTASTS 608 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G ++ +P N+Y + +SG+F VVN L+N+L + +LW M + +K +GS+ N Sbjct: 609 QILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLVELNLWGGDMENRIKAANGSVQN 668 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I IP +LK I+ T +EI +++ A+ R +I Q+QSLN++++ P+ KL ++ AW Sbjct: 669 IPEIPQNLKDIYKTVWEIKQKDVVDMAADRGAFICQSQSLNIHMENPTFGKLTSMHFYAW 728 Query: 894 LMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNA---VPVTDPNSSTHSLGIPS-- 942 GLKT TYYLR+++A +VEK + GK+N + T ++S H G S Sbjct: 729 KKGLKTGTYYLRTKAAAKAIQFTVEKKYQEESKGKINGQADLVATTASASAHQNGSVSEE 788 Query: 943 ------SCT-SDTECEVC 953 +C+ D +C+ C Sbjct: 789 YNVEGQNCSIDDPDCDSC 806 >gi|120437795|ref|YP_863481.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii KT0803] gi|117579945|emb|CAL68414.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii KT0803] Length = 819 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 295/776 (38%), Positives = 450/776 (57%), Gaps = 41/776 (5%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V++ C GL ++ + V + +YD ++ S+L+ + T+ P+YAK+ AR Sbjct: 22 VKKLCYGLNELVDPVKVAMRVIEGLYDNVTTSELDNLAAEIAATMTTSHPDYAKLAARIS 81 Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277 + L + EV+T +Y+ T + L E + IE K Sbjct: 82 VSNLHKNTKKTFSEVMTDLYEYVNPRTGEKAPLLSDEVYKVIIENKEK------------ 129 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 L + + Y RDF+++Y G + L Y L +NG E PQ MRV++G+ + + + Sbjct: 130 ---LDSTIIYNRDFSYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIHIDDLDA-- 184 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396 A+E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + GI+ L++ A +++ Sbjct: 185 -AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQS 243 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Y+E W Sbjct: 244 AGGIGLSIHNVRATGSYISGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYVEPW 303 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ +FLDL+KN G + R D+ A W+PDLFMKRV QN WTL P E L D YG Sbjct: 304 HADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEQNEKWTLMCPQECPGLFDTYG 363 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EFE YE YE E K + I A LW K+ ETG P++ +KD N +S Q++ Sbjct: 364 EEFEKLYEKYE-----AENKGRKTIKARELWEKITESQIETGTPYMLYKDAANRKSNQKN 418 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +G + SSNLCTEI +S +E AVCNL SI L N+FD+ +L + + L+ V Sbjct: 419 LGTIRSSNLCTEILEYTSPDEVAVCNLASIALPMFIKGNEFDHKELFKITKRVTKNLNKV 478 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + +++A+ SN HR +GLG+ G L +P+ S +A ++ E E + F A+ Sbjct: 479 IDRNYYPVKEAENSNMRHRPVGLGVQGLADTFIKLRMPFTSDKAKKLNQEIFETLYFAAV 538 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS+ELA+E G YS+FKGS +G F + G ++DE + + R W +L+K+V Sbjct: 539 TASMELAKEEGPYSTFKGSPISEGEFQYNLWG----IKDE---DLSGRWDWGKLRKQVMK 591 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L R+L Sbjct: 592 EGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSRNL 651 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 WD+ + + + ++GS+ +I+ IPDDLK+++ T +E+ +I+ + R +IDQ+QSLNL Sbjct: 652 WDDEVKNAIMRNNGSVQDIDIIPDDLKELYKTVWELSMKDIIDMSRHRGYFIDQSQSLNL 711 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 +++ + KL ++ AW GLKT YYLR++SA K TL+ K V V++ Sbjct: 712 FMENANYSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLEKEKKKEPIVAVSE 767 >gi|326797772|ref|YP_004315591.1| ribonucleoside-diphosphate reductase, subunit alpha [Sphingobacterium sp. 21] gi|326548536|gb|ADZ76921.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobacterium sp. 21] Length = 792 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 307/826 (37%), Positives = 468/826 (56%), Gaps = 53/826 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESD 197 + ++ DG S ++ +E+ C GL DV+ K++ + +YDG++ S+ Sbjct: 1 MYVIKRDGRSESVKFDKITARIEKLCYGLNPDLVDPIDVARKVI-----EGLYDGVTTSE 55 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ ++ +L K P+YA + +R + L + + K+ M LY Sbjct: 56 LDNLAAETAASLTTKHPDYALLASRIAVSNLHKNTV--------KSFSETMSLLY----- 102 Query: 258 RYIEE--GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 YI+ G A L+ + + + + + L + + Y+RDF+F+Y G + L Y L +NG Sbjct: 103 HYIDPKTGKPAPLIADDVYEVIQANAMELDSHIIYDRDFSFDYFGFKTLEKSYLLKLNGK 162 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ FMRVA+G+ + E ++ Y+LLS F +TPTLFN+GT PQ+SSCF Sbjct: 163 IAERPQHLFMRVAVGIHKHDIES---VIKTYDLLSERWFTHATPTLFNAGTPKPQMSSCF 219 Query: 373 LTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ DD + GI+ L++ A +++ +GG+G VR GA+I GTNG S G+IP L+V Sbjct: 220 LLTMKDDSIEGIYDTLKQTAKISQSAGGIGLSIHNVRATGAYISGTNGTSNGIIPMLRVF 279 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKGA YLE WH DV +F+DLRKN G + R D+ A W+PDLFM Sbjct: 280 NDTARYVDQGGGKRKGAFAIYLEPWHADVYDFIDLRKNHGKEELRARDLFLALWVPDLFM 339 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV +N W+LFSPDE L + +G+ FE YE YER+ +I + A LW +L Sbjct: 340 KRVEENGEWSLFSPDEAPGLAECHGEAFEKLYEQYEREGRARKI-----VKAQDLWFAIL 394 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ +KD N +S QQ++G + SSNLCTEI +S++E AVCNL S+ L + Sbjct: 395 DAQIETGTPYLLYKDAANGKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRY 454 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +FD+ KL L+ +ID N + +++A+ SN HR +GLG+ G L+ Sbjct: 455 VDNGEFDHQKLFDITYQVTINLNRIIDNNYYPVDEARNSNLRHRPVGLGVQGLADTFILM 514 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +P+ S A ++ + E I F A++AS +LA + G Y SFKGS QG F D L Sbjct: 515 RMPFESEAAKQLNKDIFETIYFAAMTASKDLAVKEGPYESFKGSPLSQGKFQFD----LW 570 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 V+ + + R W+ L+K +K G+RNS +A PTA+ + I G ++ +P N+Y Sbjct: 571 NVKPD-----SGRWDWEGLRKEIKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 625 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F +VN L+ +L + LW+ M + + +GSI +I IP D+K+++ T +E Sbjct: 626 TRRVLSGEFVIVNKHLLRDLVELGLWNNEMKNRIIAANGSIQDINEIPADIKELYKTVWE 685 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +I+ A+ R +I Q+QSLNL+++ P+ KL ++ AW GLKT YYLR+++AT Sbjct: 686 IKMRNIIDMAADRGAFICQSQSLNLFVNTPTTAKLTSMHFYAWKKGLKTGMYYLRTQAAT 745 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS--CTSDTECEVC 953 K T++ GK N PV + IP+ C+ + C C Sbjct: 746 QAVKFTVENQAGK-NMEPVIPAKIESVPDDIPTGAVCSMEEGCITC 790 >gi|110636873|ref|YP_677080.1| ribonucleoside diphosphate reductase subunit alpha [Cytophaga hutchinsonii ATCC 33406] gi|110279554|gb|ABG57740.1| ribonucleoside diphosphate reductase, alpha subunit [Cytophaga hutchinsonii ATCC 33406] Length = 794 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 296/781 (37%), Positives = 449/781 (57%), Gaps = 40/781 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ DG S ++ +E C GL V V +YDG++ +L+ Sbjct: 3 VLKRDGRRESVKFDKITSRIERLCYGLDMNYVDPTSVAKRVIDGLYDGVTTEELDHLAAE 62 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--E 262 ++ ++ K P+YA + AR ++ ++KK K+ + M+ LY Y++ Sbjct: 63 TAASMTTKHPDYATLAARI--------AVSNLHKKTSKSFANTMKRLYT-----YVDPKT 109 Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G A ++ + +F + L + + Y+RD+ ++Y G + L Y L ++G +E PQ Sbjct: 110 GENASMISNEVYEFIRKNAAILDSAIIYDRDYGYDYFGFKTLEKSYLLKVDGKIVERPQH 169 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRV+ G+ + + A+E YNL+S F +TPTLFNSGT PQLSSCFL T DD Sbjct: 170 MLMRVSCGIHSGDIDA---AIETYNLMSERWFTHATPTLFNSGTPKPQLSSCFLLTTQDD 226 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A +++ +GG+G +R G++I GTNG S G+IP L+V NDTA V Sbjct: 227 SIDGIYETLKQCAKISQSAGGIGLSIHNIRATGSYIKGTNGTSNGIIPMLRVFNDTARYV 286 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH DV EFLDLRKN G + R D+ A WI DLFMKRV +N Sbjct: 287 DQGGGKRKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENG 346 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P E L D YGK+FE YE YE++ + + I A LW +L ETG Sbjct: 347 DWSLFCPHEAPGLADCYGKDFEALYEKYEKEG-----RARKTIKAQELWFAILEAQVETG 401 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P++ +KD N +S Q+++G + SSNLCTEI +S EE AVCNL S+ L N +FD Sbjct: 402 TPYMLYKDAANRKSNQKNLGTIKSSNLCTEIMEFTSPEEVAVCNLASLALPKFVINGKFD 461 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + KL A + L+ +ID+N + + +A++SN HR IGLG+ G A LL +P+ S Sbjct: 462 HQKLYDVTYVATKNLNKIIDVNYYPVPEAERSNKRHRPIGLGVQGLADAFILLRMPFESD 521 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I + A++AS +LA++ G Y +FKGS +G+F D G+ Sbjct: 522 EAKQLNIDIHETIYYAAMTASKDLAEKLGPYETFKGSPVSKGIFQFDMWGVTPA------ 575 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + R W+ LK+ VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG Sbjct: 576 ---SGRYDWEALKREVKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+ +L + +LWD+ M + L +GS+ NI IP ++K ++ TA+EI LI Sbjct: 633 EFVVVNKHLLKDLIKLNLWDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAWEIKGKTLI 692 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + ++ R +I Q+QSLN+++ E + KL ++ AW GLKT YYLR++SA + + T+ Sbjct: 693 DMSADRGAYICQSQSLNIFMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSAANAIQFTV 752 Query: 917 K 917 + Sbjct: 753 E 753 >gi|333024514|ref|ZP_08452578.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. Tu6071] gi|332744366|gb|EGJ74807.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. Tu6071] Length = 790 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 288/676 (42%), Positives = 401/676 (59%), Gaps = 34/676 (5%) Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLL 346 D F Y GL+ LY RY L I +E PQ F +RVA GLA ++ Y L+ Sbjct: 138 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVDEVASLYRLM 197 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++GG+G ++ Sbjct: 198 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGIGIAYS 257 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH D+EEFL+L Sbjct: 258 RIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIEEFLEL 317 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 R NTG+D+RRTH +N A+WIPD FM+RV +A W+LFSP +V +L DL+G+EFE AY Sbjct: 318 RDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGEEFEAAYRAA 377 Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582 E + + RK I A L+ +M+ L +TG W+TFKD N + Q + VVHSS Sbjct: 378 EAKG------LARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGSVVHSS 431 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLCTEI + ETAVCNLGSINL A N D+++L T+RTAV LD V+DIN + Sbjct: 432 NLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDRVVDINFYP 491 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 ++A SN R +GLG MG Q L +P+ S EA ++ E I A ASV+LA Sbjct: 492 TDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASVDLA 551 Query: 703 QERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 ++ G +++ + +GV P D + RT W+ L+ R+ GMRNS Sbjct: 552 EKHGPVPAWEKTRTARGVLHP-----------DHYDVERTWPERWEALRARIARSGMRNS 600 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPTATIA+I GV + ++P NL+ + +SG+F VN +LV +LK+ +WD Sbjct: 601 LLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVWDARTR 660 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 L+ +GS+ IP++++ ++ TA+E+ LI+ A+ R ++DQ+QSLNL+++ P+ Sbjct: 661 EALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLFMETPT 720 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV---PVTDPNSSTHSL 938 KL +Y AW GLKTTYYLRSR AT + ++ V D + SL Sbjct: 721 IGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGAPAAEAAPIPVQQSVPDAEAIACSL 780 Query: 939 GIPSSCTSDTECEVCQ 954 P S CE CQ Sbjct: 781 ENPES------CEACQ 790 >gi|149916692|ref|ZP_01905194.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis pacifica SIR-1] gi|149822409|gb|EDM81798.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis pacifica SIR-1] Length = 792 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 312/801 (38%), Positives = 444/801 (55%), Gaps = 61/801 (7%) Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230 +GL V + + ++T + L+ L ++ I +EP+Y+K+ AR L + R Sbjct: 36 AGLDGVELERLFAQTRERAPADADRETLDELLARTAVGWIVEEPDYSKLAARILAGAIAR 95 Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN---DLKY 287 E + Q T F +E + L + ++F + A L Sbjct: 96 EAAS------QGVTS----------FLNSVETLHRLGLGNARALNFARAHAATLEAALDR 139 Query: 288 ERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 E D FEY GL+ ++DRY + +R +E PQ FFMRVA LA+ E AV Y L Sbjct: 140 EGDRRFEYFGLRTVFDRYLMRHPKTRRVLETPQHFFMRVAAALAVDPDE----AVALYGL 195 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDW 404 S ++ S+PTLFN+GT QLSSCFL P D L I+ + A L+K+SGG+G + Sbjct: 196 FSRLDYLPSSPTLFNAGTHREQLSSCFLLDSPADHLVDIYERYTDVAKLSKFSGGIGLAY 255 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR G+ I TNG S G++P+LK + + AVNQGG+RKGA C YLETWH D+ EFL+ Sbjct: 256 HRVRSRGSLIGDTNGHSNGIVPWLKTLDASVAAVNQGGRRKGACCVYLETWHADLPEFLE 315 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 LR NTG++ R H++N ANWIPD FM+RV + GW+LF P V DLYG+ F AY Sbjct: 316 LRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFDPKTVRHFPDLYGEAFTRAYV- 374 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582 +A+R + V + A L+ +M+ L +TG+ W+ FKD CN Q + VH S Sbjct: 375 ---EAERAGLAVA-TLPARELYARMMRTLAQTGNGWMCFKDRCNSTCNQTARPGRTVHLS 430 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLD 633 NLCTEI +S EETAVCNLGSINL H A+ + D+ KL ++ AVR LD Sbjct: 431 NLCTEIVEVTSPEETAVCNLGSINLGHHLRPIDGGGTQADWEVDWAKLGRSVTLAVRALD 490 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 VID+N + +E A KSN R +GLG MG L L + + SP A E+A E + FH Sbjct: 491 RVIDLNFYPLETAAKSNARWRPVGLGTMGLHDLLLRLGLDFDSPAARELARRVAEHVYFH 550 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ S +LA++ G + +F + G D G + LPWD L++ V Sbjct: 551 ALRTSCDLARQHGPHPAFPETRAADGQLQFDLWG----------VEPGEDLPWDTLRRDV 600 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 + G+RNS +A+APTATIA+I G + I+P+ NL + +SG+F VN +L++EL++ Sbjct: 601 ASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLVKRETLSGEFIQVNRYLIDELRRL 660 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LWDEAM + LK +GS+ I R+P+ L++ TA+E+ LI+ A+ R +IDQ+QSL Sbjct: 661 GLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWELPMRALIDMAAARGPFIDQSQSL 720 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 NL+++ P +L +Y AW GLKTTYYLRSR A+ + K+T+ + K P Sbjct: 721 NLFVESPDLTRLSAMYFYAWKAGLKTTYYLRSRPASGIAKATVDPANAK--------PKQ 772 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 + + S + CE CQ Sbjct: 773 RSAE-ALACSLENPEACEACQ 792 >gi|150024560|ref|YP_001295386.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium psychrophilum JIP02/86] gi|149771101|emb|CAL42568.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium psychrophilum JIP02/86] Length = 806 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 295/771 (38%), Positives = 452/771 (58%), Gaps = 37/771 (4%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 +++ C GL D+ + V + +YDG++ S+L+ ++ ++ P+YA++ AR Sbjct: 22 IKKLCYGLNDLVDAVKVAMRVIEGLYDGVATSELDNLAAETAASMTIAHPDYAQLAARI- 80 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYL 281 ++ ++ K+ M +Y R G +A LL E +++ + +L Sbjct: 81 -------AISNLHSNTNKSFSETMNEMYHYVNPR---NGQEAPLLSEEVHTVIQENAAFL 130 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 + + Y RDF ++Y G + L Y L ING +E PQ MRV++G+ L + K +E Sbjct: 131 NSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLNDL---KSVIE 187 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400 Y+L+S F +TPTLFN+GT PQ+SSCFL + DD + GI+ L++ A +++ +GG+ Sbjct: 188 TYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQSAGGI 247 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Y+ETWH D+ Sbjct: 248 GLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYIETWHADI 307 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFLDL+KNTG + R D+ A W DLFMKRV +N WTL P+E L+D+YG+EFE Sbjct: 308 FEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGDWTLMCPNECPGLYDVYGEEFE 367 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y NYE+ A +G + I A LW K+L ETG P++ +KD N +S Q+++G + Sbjct: 368 KMYTNYEK-AGKGR----KTIKAHELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 SSNLCTEI +S +E AVCNL S++L N F++D L + + R L+ VID N Sbjct: 423 RSSNLCTEIMEYTSKDEIAVCNLASLSLPMFIENGTFNHDLLFTVTKRVTRNLNKVIDRN 482 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ + SN HR IGLG+ G A +L +P+ S +A ++ E E + F A++AS+ Sbjct: 483 YYPVKEGENSNKRHRPIGLGVQGLADAFIMLRLPFTSDQAKKLNQEIFETLYFAAVTASM 542 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 E+A E G YS+F GS QG F + GL +DE + R W L+K V G+R Sbjct: 543 EMAIEEGPYSTFAGSPISQGEFQYNLWGL----KDE---ELSGRWDWANLRKEVMKNGVR 595 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+N+L +R LW E Sbjct: 596 NSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLNDLVERGLWTED 655 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + L +GS+ + IP DLK+++ T +E+ +I+ + +R ++DQ+QSLNL++ + Sbjct: 656 LKQQLMRENGSVQKL-NIPQDLKELYKTVWEMSMKDIIDMSRQRGYFVDQSQSLNLFMQD 714 Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 + KL ++ AW GLKT YYLR+++A K TL D K A P+T Sbjct: 715 ANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNN-DKK--AEPIT 762 >gi|146298284|ref|YP_001192875.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium johnsoniae UW101] gi|146152702|gb|ABQ03556.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium johnsoniae UW101] Length = 797 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 293/801 (36%), Positives = 463/801 (57%), Gaps = 40/801 (4%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 +++ C GL ++ + V + +YDG+S S+L+ ++ ++ P+YA++ AR Sbjct: 22 IKKLCYGLNELVDPVKVAMRVIEGLYDGVSTSELDNLAAETAASMTIAHPDYAQLAARV- 80 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281 ++ ++ +K+ M+ +Y R G A L+ + + + +L Sbjct: 81 -------AISNLHSNTKKSFSETMKDMYNYVNPR---NGQDAPLIADDVYKVIQENAAFL 130 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 + + Y RDF ++Y G + L Y L ING +E PQ MRV++G+ L + K +E Sbjct: 131 DSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLDDL---KSVIE 187 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400 Y+L+S F +TPTLFN+GT PQ+SSCFL + DD + GI+ L++ A +++ +GG+ Sbjct: 188 TYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQSAGGI 247 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Y+ETWH D+ Sbjct: 248 GLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYIETWHADI 307 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLDL+KNTG + R D+ A W DLFMKRV +++ WTL P+E L+D+YG EFE Sbjct: 308 FDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDSTWTLMCPNECPGLYDVYGDEFE 367 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y +YE RG+ + + I A LW K+L ETG P++ +KD N +S +++G + Sbjct: 368 ALYTDYEF---RGKGR--KTIRARELWEKILESQIETGTPYMLYKDAANRKSNHKNLGTI 422 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 SSNLCTEI +S +E AVCNL SI+L N +FD+ L + + R L+ VID N Sbjct: 423 RSSNLCTEIMEFTSKDEIAVCNLASISLPMFIDNGEFDHQALYNVTKRVTRNLNKVIDRN 482 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++A+ SN HR +GLG+ G A +L +P+ S EA ++ E E + F A++AS+ Sbjct: 483 YYPVKEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKKLNQEIFETLYFAAVTASM 542 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 E+A+E G YS+F+GS QG F + G+ +DE + R W L+K V G+R Sbjct: 543 EMAKEEGPYSTFEGSPMSQGEFQYNMWGM----KDE---ELSGRWDWASLRKEVVEHGVR 595 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L + LW+E Sbjct: 596 NSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVKLGLWNED 655 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + ++ H+GS+ NI++IP DLK ++ T +E+ +I+ + +R +IDQ+QSLNL++ + Sbjct: 656 LKQEIMRHNGSVQNIDKIPQDLKDLYKTVWEMSMKDIIDMSRQRGYFIDQSQSLNLFMQD 715 Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 + KL ++ AW GLKT YYLR+++A K TL D K P + S+ Sbjct: 716 ANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLNN-DKKEETAPSLVQETEAISV 774 Query: 939 G------IPSSCTSDTECEVC 953 + + +CE+C Sbjct: 775 EDYKAMLLKAQAADPEDCEMC 795 >gi|109947415|ref|YP_664643.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter acinonychis str. Sheeba] gi|109714636|emb|CAJ99644.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter acinonychis str. Sheeba] Length = 788 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 322/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNYPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAIWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG+EFE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLSELYGQEFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------------------------SE 595 FKD N +P H G++ SSNLCTEI N++ S Sbjct: 404 FKDNANRCNPNAHTGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSN 463 Query: 596 ETAVCN-LGSINLLAHFANNQFDYDKLASTIRTAV------------------------- 629 T N L S ++L + K+A +TAV Sbjct: 464 ITKCANKLTSTDILK--GKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI SV LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ + +A++ID LI +A+ RQKWIDQ Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIRAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRVENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|38344004|emb|CAC17631.2| class I ribonucleotide-diphosphate reductase large chain [Streptomyces microflavus] Length = 793 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 296/753 (39%), Positives = 430/753 (57%), Gaps = 44/753 (5%) Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 I+ E + L D V + + + G ++L ++ LI ++P Y+++ AR L Sbjct: 31 ILTELTADLPDTDPGRVAAAALRGRHPGSDTAELRELATEAAAGLIAEDPAYSRLAARLL 90 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---L 281 + E Q A F + G + L+ E +F ++ L Sbjct: 91 TLTIAEEA------AGQGAVS----------FSESVATGHREGLIAERTAEFAALHADRL 134 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KR 338 + + D F Y GL+ LY RY L I IE PQ F + VA GLA ++ + Sbjct: 135 DSAIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLGVAAGLAEDDSVRALDE 194 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++ Sbjct: 195 VTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 254 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH Sbjct: 255 GGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 314 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V +L DLYG E Sbjct: 315 DIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLYGAE 374 Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--Q 574 F+ AY E + + RK + A L+ +M+ L +TG+ W+TFKD N + Q + Sbjct: 375 FDAAYVAAEAKG------LARKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTAE 428 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVL 632 VVHSSNLCTEI + ETAVCNLGS+ L A A+ + D+++L +T+RTAV L Sbjct: 429 PGSVVHSSNLCTEIIEVTDDGETAVCNLGSVKLGAFVDTASGELDWERLDATVRTAVTFL 488 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D V+DIN + E+A +SN R +GLG MG Q L +P+ S EA ++ E I Sbjct: 489 DRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRISERIML 548 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS +LA+ G ++ + +GV D ++ + R W L+ R Sbjct: 549 AAYEASADLAERNGPLPAWDKTRTARGVLHHDHY--------DVELTWPER--WAALRAR 598 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + +GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LV+ELK+ Sbjct: 599 IAEVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKR 658 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +WD L+ GS+ + +P + + ++ TA+EI LI+ A+ R ++DQAQS Sbjct: 659 LGVWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAARTPFLDQAQS 718 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 LNL+++ P+ KL +Y AW GLKTTYYLRS Sbjct: 719 LNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRS 751 >gi|322379521|ref|ZP_08053886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS1] gi|322380284|ref|ZP_08054500.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS5] gi|321147267|gb|EFX41951.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS5] gi|321148076|gb|EFX42611.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS1] Length = 798 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 319/775 (41%), Positives = 436/775 (56%), Gaps = 120/775 (15%) Query: 194 SESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 S DL T+LI + I+ + PN++ V AR LE L ++V P + Sbjct: 64 STQDLFTSLIKMAVDRIDVDAPNWSFVAARLFLEDLYQKVSGFSGYLPLRV--------- 114 Query: 253 PEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 Y+E G K R++ FDL L + LK ERD+ F YLG++ LYDRY L Sbjct: 115 ------YLERGESKGRIVRGFKEKFDLELLDSALKPERDWQFNYLGIKTLYDRYLLKDES 168 Query: 312 SR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 + IE+PQ FM +AM LA E++ RA+EFY +LS F MC+TPTL N+ T + QLSS Sbjct: 169 NHPIELPQHMFMAIAMFLAQNESDPNARALEFYGVLSRFELMCATPTLANARTPNHQLSS 228 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C++ + PD++ GIF + ++ A+L+KY GG+G D++ VR LG+ I G S GVIPFLK+ Sbjct: 229 CYIGSTPDNIEGIFDSYKDMALLSKYGGGIGWDFSQVRCLGSFIDGHKSASAGVIPFLKI 288 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 AND AVAV+Q G RKGA+ YLE WH+D+ EF+DLRKN+GD+RRR HD+ A WI DLFM Sbjct: 289 ANDVAVAVDQLGTRKGAIAVYLEIWHMDILEFIDLRKNSGDERRRAHDLFPALWICDLFM 348 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV + WTLF P DL +G EFE Y YE+ + V +I A LW+K+L Sbjct: 349 QRVEADQEWTLFDPYRCQDLTQCFGAEFEAKYLAYEQDSHM----VKHRIKARDLWKKIL 404 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594 T FETG P++ FKD N +P HVG++ SSNLCTEI N+SS Sbjct: 405 TNYFETGLPFLGFKDNANRANPNGHVGMIRSSNLCTEIYQNTSSSHYKMQIDFTDGSREF 464 Query: 595 --EETAVC--------------------------------------NLGSINLLAHFANN 614 E VC NL S+NL N+ Sbjct: 465 FEELEEVCTDTGITKRANKLSSNDSLGGKKIFMASKVAEEGMVAVCNLASLNLSK--INS 522 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 Q D +++ + AVR+LDNVID+N + I KAK++N RAIGLG+MG L I + Sbjct: 523 QQDLERV---VPIAVRMLDNVIDLNFYPISKAKETNLKSRAIGLGVMGEAQMLAEARIKW 579 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S E D +E +S+ AI AS +LA ERG+Y+ F+GS W QG+FPID I EV+ Sbjct: 580 GSAEHALKMDFLLEKMSYEAIKASSQLAIERGSYAYFEGSAWSQGIFPIDYIK--QEVK- 636 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 E++ ++ R W LKK+VK G+RN MAIAPT++I+ + G +Q+I+P YQ +++ N Sbjct: 637 EISPHK-PRCDWKSLKKKVKEQGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWLEEN 695 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG VV L ++E P + +A++ID Sbjct: 696 LSGLIPVVVPSL--------------------------SLETWP-----FYTSAYDIDAK 724 Query: 855 WLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +I+ A+ RQKWIDQ QSLNL+L + SGK L IY AW +GLK+TYYLR++S Sbjct: 725 DMIKLAAVRQKWIDQGQSLNLFLRPKKASGKLLHEIYYLAWKLGLKSTYYLRTQS 779 >gi|152993944|ref|YP_001359665.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp. NBC37-1] gi|151425805|dbj|BAF73308.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurovum sp. NBC37-1] Length = 789 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 310/823 (37%), Positives = 455/823 (55%), Gaps = 107/823 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ +G + + + +++ A GL DVS + + D ++ +++T LI Sbjct: 2 VRVVKRNGRVETLDVSKIQKYTSAAVEGLDDVSQSELEVDAKLQFRDMITSEEIQTTLIK 61 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ PN+ V AR L Y KAT EYF R +EG Sbjct: 62 TAVDKIDIDRPNWTFVAARLFL-----------YDIYHKATGFTGYNHLREYFERGEKEG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R++ +DL L + +K ERD F YLGL+ LYDRY L NG IE+PQ FM Sbjct: 111 ---RIVLGLKDKYDLDDLNDYIKPERDLQFNYLGLRTLYDRYLLKDRNGVPIELPQQLFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 VAM LA E + + A +FY++LS F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 GVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF +E A+L+K+ GG+G DWT VRG+G++I G + G++PFLK+AND A+AV+Q G Sbjct: 228 IFDGYKEMALLSKFGGGIGWDWTLVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WH+DV +FLDL+KN+G++RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEPWHVDVRDFLDLKKNSGEERRRAHDLFPALWLNDLFMKRVEEDATWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWI 561 P EV++L +LYG+EFE Y E + + R+ ISA LW+++L FETG+P++ Sbjct: 348 DPFEVTELTELYGEEFEKRYVELEHS----DADITREVISAKGLWKEILRSYFETGNPFL 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------------- 592 TFKD N +P +HVG++ SSNLCTEI N+ Sbjct: 404 TFKDAANRANPNKHVGIIRSSNLCTEIFQNTAPNTYKTRFTFTDGSIESYDENEMLTVDN 463 Query: 593 -----SSEETAVCNLGS-----------------INLLAHFANNQFDYDKLASTIRTAVR 630 + + TA+ +LG NL + + + +A + TAVR Sbjct: 464 GTTKPAKKVTALDSLGGKQIWIVDKEKIDGDTAVCNLASINLSKIHTKEDIARVVPTAVR 523 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + + K K++N R+IGLG+MG L I + S + DE ME + Sbjct: 524 MLDNVIDLNFYPLAKVKRTNEKSRSIGLGVMGEAQMLAENQIAWGSHDHFTKIDEVMESV 583 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA-EVRDELAMNRTSRLPWDEL 749 S++AI AS LA E+G Y +F GS W +G+FPID A ++ D + S W L Sbjct: 584 SYYAIEASSNLALEKGKYPTFDGSDWSKGIFPIDKANENACKLVDRGGLFGYSH-DWTAL 642 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VKT GMRN MA+APT++I+ + G +Q+I+P Y+ + + N+SG V Sbjct: 643 REKVKTDGMRNGYLMAVAPTSSISILTGTTQAIEPVYKRKWFEENLSGLIPVTAP----- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 ++ D + + A+++D LI++ + RQKWIDQ Sbjct: 698 --------------------------KLSPDTWQYYTPAYDLDQNVLIKAGAIRQKWIDQ 731 Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 QSLN++ LD+ SGK L+ IY AW GLK+TYYLRS+S S Sbjct: 732 GQSLNIFITLDKASGKYLNEIYMNAWKFGLKSTYYLRSQSPES 774 >gi|256072094|ref|XP_002572372.1| ribonucleoside-diphosphate reductase alpha subunit [Schistosoma mansoni] gi|238657529|emb|CAZ28603.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Schistosoma mansoni] Length = 837 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/792 (36%), Positives = 457/792 (57%), Gaps = 45/792 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 K+ ++ DG + + +++ + C GL + + + V +Y G++ +L+ Sbjct: 16 KIYVVKRDGRNEAIHCEKITKRIRAMCYGLNESYIDVEAVTKRVVSGLYPGVTTVELDNL 75 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + ++I K YA + AR + L +E T + + +C YI Sbjct: 76 AAETCASMITKHHEYAILAARLAVSNLHKE------------TKSRFSDVVEDLYC-YIN 122 Query: 262 EGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 K + L+ +S+ DF + L + + Y+RD+ + Y G + L Y L ING E Sbjct: 123 PRTKKHSPLVSKSLRDFVRENAGRLNDAIDYQRDYTYNYFGFKTLERSYLLKINGKVHER 182 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ MRV++G+ + + A+E YNL+S F ++PTLFN+GT PQLSSCFL T+ Sbjct: 183 PQHMLMRVSIGIHTSDIDS---AIETYNLMSEKWFTHASPTLFNAGTPKPQLSSCFLITM 239 Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 DD + GI+ L+E A+++K +GG+G + +R LG +I GTNG+S G++P L+V N TA Sbjct: 240 KDDSIEGIYDTLKECAVISKNAGGIGLNVHNIRSLGTYIAGTNGESNGIVPMLRVFNSTA 299 Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+QGG KR GA YLE WH DV +F+++RKNTG + R D+ A WIPDLFM+RV Sbjct: 300 RYVDQGGNKRPGAFAMYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVE 359 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N WTL P E L +++G++F+ YE YER+ RG + + A LW ++ Sbjct: 360 SNDKWTLMDPHECPGLPEVWGEDFDTLYEKYEREG-RGR----QTVKAQELWYAIIECQI 414 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETG+P++ +KD CN +S QH+G + SNLCTEI SS +ETAVCNL SI+L F N Sbjct: 415 ETGNPFMLYKDSCNRKSNHQHLGTIRCSNLCTEIVEYSSPDETAVCNLASISL-GKFVNR 473 Query: 615 Q---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 FD+ KL + R L+ VID+ + +E+A++SN HR IG+G+ G A LL Sbjct: 474 DNLTFDFAKLQEVTKVVTRNLNKVIDVTFYPVEEARRSNMRHRPIGIGVQGLADAFCLLR 533 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 P+ SPEA ++ E + F ++ AS +LA ++G Y S++GS +G+ D G+ Sbjct: 534 YPFDSPEAADLNKRIFETMYFASLDASCQLAVDQGTYESYQGSPVSKGILQPDMWGV--- 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D +++ S L W L+ R+ G+RNS +A PTA+ + I G ++S +P N++ Sbjct: 591 --DTEELSKVSGLDWSGLRARINKYGLRNSLLLAPMPTASTSQILGNNESTEPFTSNVFS 648 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F +VN +L+++L + +LW E + + + + GSI +I+ IP +LK ++ T +EI Sbjct: 649 RRVLSGEFQIVNPYLLDDLTKLELWSEELKTAIVLNQGSIQHIDGIPKELKPLYKTVWEI 708 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT- 909 +I+ A+ R +IDQ+QSLNL+L +P+ K+ ++ AW GLKT YYLR+R A Sbjct: 709 SQKKIIDMAAGRAPFIDQSQSLNLHLAQPNYGKITSMHFYAWRKGLKTGMYYLRTRPAAD 768 Query: 910 ----SVEKSTLK 917 SV+K+ L+ Sbjct: 769 PIKFSVDKTILR 780 >gi|71895081|ref|NP_001026008.1| ribonucleoside-diphosphate reductase large subunit [Gallus gallus] gi|53127690|emb|CAG31174.1| hypothetical protein RCJMB04_2p9 [Gallus gallus] Length = 790 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 290/762 (38%), Positives = 445/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M LY YI G + ++ + +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMDDLY-----NYINPHNGKHSPMISKETLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L IN E PQ MRVA+G+ + + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVAVGIHKNDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT P+LSSCFL + DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPRLSSCFLLCMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V R + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL SI L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A++SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS ELA+++G Y +++GS +G+ D + + W LK+++ Sbjct: 541 EASCELAEQQGPYETYEGSPVSKGILQYDMWNVTP----------SDLWDWKALKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS ++ PTA+ A I G ++SI+P N+Y + +SG+F VVN L+ +L +R L Sbjct: 591 YGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + H+GSI NI IP DLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR++ A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 752 >gi|315586644|gb|ADU41025.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter pylori 35A] Length = 788 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 321/827 (38%), Positives = 451/827 (54%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL DLYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTDLYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------------NL 607 FKD N +P H G++ SSNLCTEI N++ + GSI N Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGSIEFFEEKQLVTTDNH 463 Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631 + AN D K+A +TAV R+ Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRL 523 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME IS Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +HAI S LA+E+G Y F+ S W +G+FPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-- 700 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 W+ + +A++ID LI++A+ RQKWIDQ Q Sbjct: 701 ---TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 S+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|31982026|ref|NP_033129.2| ribonucleoside-diphosphate reductase large subunit [Mus musculus] gi|16741219|gb|AAH16450.1| Ribonucleotide reductase M1 [Mus musculus] gi|26352964|dbj|BAC40112.1| unnamed protein product [Mus musculus] gi|74205882|dbj|BAE23230.1| unnamed protein product [Mus musculus] gi|74214440|dbj|BAE40455.1| unnamed protein product [Mus musculus] gi|148684655|gb|EDL16602.1| ribonucleotide reductase M1, isoform CRA_b [Mus musculus] Length = 792 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ S +D + Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D++KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS ELA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|325953831|ref|YP_004237491.1| ribonucleoside-diphosphate reductase, subunit alpha [Weeksella virosa DSM 16922] gi|323436449|gb|ADX66913.1| ribonucleoside-diphosphate reductase, alpha subunit [Weeksella virosa DSM 16922] Length = 779 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 298/782 (38%), Positives = 447/782 (57%), Gaps = 52/782 (6%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + + + +YD ++ ++L+ ++ T P++A + AR + L + L + K Sbjct: 39 IAKKVIQGIYDNVTTTELDNLAAETAATYTTVHPDFAVLAARISVSNLHKNTLKSFSKTA 98 Query: 241 QKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEY 295 + LY YI+ +A LL E D + + + + Y+RD+ F+Y Sbjct: 99 K--------LLYD-----YIDPVTNTRAPLLSEETYDIIRNNADEIDSSIIYDRDYNFDY 145 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + L Y + NG E PQ FMRVA+G+ ++ K A+E YNL+S F+ +T Sbjct: 146 FGFKTLERSYLIRTNGKVTERPQHLFMRVALGIHKQDI---KAAIETYNLMSEKWFIHAT 202 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFNSGT PQ+SSCFL ++ +D + GIF L+ A++++ +GG+G VR G++I Sbjct: 203 PTLFNSGTPKPQMSSCFLLSMTEDSIVGIFDTLKRCALISQSAGGIGLSIHNVRATGSYI 262 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GT G S G+IP L+V NDTA V+QGG KRKGA+ YLE WH D+ +FL+LRKN G + Sbjct: 263 KGTGGISNGIIPMLRVYNDTARYVDQGGGKRKGAIAVYLEPWHADIFDFLNLRKNHGKEE 322 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A WIPDLFM+RV +NA W+LF P+E L+D+YG FE Y++YE Sbjct: 323 MRARDLFPALWIPDLFMQRVEENADWSLFDPNEAPGLYDVYGSSFEELYQHYENDG---- 378 Query: 534 IKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +FRK + A LW +L ETG P++ +KD N +S Q+++GV+ SSNLCTEI + Sbjct: 379 --IFRKKVKARELWNAILEAQIETGTPYMCYKDAANEKSNQKNIGVIRSSNLCTEIMEYT 436 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 S++E AVCNL S+ L + + N FD+ KL + R L+ VID N + + + + SN Sbjct: 437 SADEVAVCNLASLALPRYVSENGFDFQKLYEVTKIVTRNLNKVIDGNYYPVPETENSNFK 496 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 HR IGLG+ G LL +P+ S +A ++ + E I + A+ +S+ELA+E GAY SFK Sbjct: 497 HRPIGLGVQGLADVFLLLRMPFESEKARQLNKDIFETIYYAAMESSMELAKEEGAYESFK 556 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS +G F D L V+ + R W L+K V G+RNS +A PTA+ Sbjct: 557 GSPLSEGKFQFD----LWNVQP------SDRWDWKGLRKNVMEFGVRNSLLVAPMPTAST 606 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G ++ +P N+Y + +SG+F VVN L+ +L + +LWD M + L +GS+ Sbjct: 607 SQILGNNECFEPYTSNIYNRRVLSGEFVVVNKHLIKDLIELNLWDARMKNKLIAENGSVQ 666 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 NIE IP +LK+++ T +EI +I+ A+ R +I Q+QSLNL++ EP+ KL ++ A Sbjct: 667 NIEEIPANLKELYKTVWEIKQKTIIDMAADRGAFICQSQSLNLFMAEPNMAKLTSMHFYA 726 Query: 893 WLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951 W GLKT YYLR+++A K T++ V +S + I S + EC Sbjct: 727 WKSGLKTGMYYLRTKAAADAIKFTVEKVQ-----------SSEDKQVDISCSLDNPDECI 775 Query: 952 VC 953 VC Sbjct: 776 VC 777 >gi|312130871|ref|YP_003998211.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella byssophila DSM 17132] gi|311907417|gb|ADQ17858.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella byssophila DSM 17132] Length = 820 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 297/785 (37%), Positives = 449/785 (57%), Gaps = 46/785 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ DG S ++ +E C GL V V + +YDG++ S+L+T Sbjct: 3 VVKRDGRRESVKFDKITARIERLCYGLDPYFVQPVEVAMKVVAGIYDGVTTSELDTLAAE 62 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-- 262 ++ ++ K P+YA + AR + L + L K+ M+ LY +Y++ Sbjct: 63 TAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSGTMKLLY-----QYVDPKT 109 Query: 263 GVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G A L+ + ++ + L + + Y+RDF +++ G + L Y + +NG +E PQ Sbjct: 110 GENAALISKETWKIIQANAALLDSSIIYDRDFGYDFFGYKTLEKSYLMKLNGKIVERPQH 169 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRVA+G+ + EK A+E YNLLS F +TPTLFN+GT PQLSSCFL T+ DD Sbjct: 170 MLMRVAVGIHGENIEK---AIETYNLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKDD 226 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A +++ +GG+G VR G++I GTNG S G+IP L+V NDTA V Sbjct: 227 SIEGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGIIPMLRVFNDTARYV 286 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKG+ YLE WH D+ EFL+L+KN G + R D+ A W PDLFMKRV NA Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANA 346 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P E L D YG++FE Y YE E K + I A LW ++L ETG Sbjct: 347 DWSLFCPHECPGLADTYGEDFERLYTKYE-----AEGKARKTIPAQELWFQILESQVETG 401 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615 P++ +KD N +S Q+++G + SSNLCTEI ++ +E AVCNL SI L F N + Sbjct: 402 TPYMLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASI-ALPKFVNTEGP 460 Query: 616 ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 FD+ KL + R L+ +IDIN + + +A+ SN HR IGLG+ G A L+ Sbjct: 461 APSFDFQKLYEVTKVVTRNLNRIIDINYYPVPEAENSNKRHRPIGLGIQGLADAFILMRF 520 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S EA ++ + E + F A+ S+ELA+E G YSSF+GS +G+F D + + Sbjct: 521 PFDSEEAQKLNRDVFETLYFAAMETSMELAKEEGPYSSFEGSPISKGIFQFDMWDVTPD- 579 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + W++L+K+V G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 580 --------SGLWDWEDLRKKVMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSR 631 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN L+ +L + LW++ M + L +GS+ I IP+DLK ++ TA+EI Sbjct: 632 RVLSGEFVVVNKHLLRDLVKIGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAWEIK 691 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +I+ ++ R +I Q+QSLN+++ +P+ KL ++ AW GLKT YYLR+++A Sbjct: 692 QKSIIDMSADRGAYICQSQSLNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAAADA 751 Query: 912 EKSTL 916 K T+ Sbjct: 752 VKFTV 756 >gi|116283230|gb|AAH03299.1| Rrm1 protein [Mus musculus] Length = 762 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ S +D + Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D++KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS ELA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|200765|gb|AAA40061.1| ribonucleotide reductase subunit M1 [Mus musculus] Length = 792 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ S +D + Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F + PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D++KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS ELA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|319953270|ref|YP_004164537.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga algicola DSM 14237] gi|319421930|gb|ADV49039.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga algicola DSM 14237] Length = 825 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 299/771 (38%), Positives = 445/771 (57%), Gaps = 35/771 (4%) Query: 166 VEEACSGLQDVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V + C GL ++ I +S + +YDG++ S+L+ S T+ P++AK+ AR Sbjct: 22 VRKLCYGLNELVDPIKVSMRVIEGLYDGVTTSELDNLAAEISATMTTTHPDFAKLAARIS 81 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281 + L +K +K+ M+ LY EY G K+ LL + + + +L Sbjct: 82 VSNL--------HKNTKKSFADTMKDLY-EYVNP--RNGKKSPLLSDEVFKVISENAAFL 130 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 + + Y RDF ++Y G + L Y L ING E PQ MRV++G+ L + E VE Sbjct: 131 DSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMRVSVGIHLDDLEA---VVE 187 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400 Y L+S F +TPTLFNSGT PQ+SSCFL + DD + GI+ L++ A +++ +GG+ Sbjct: 188 TYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAQISQSAGGI 247 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Y+E WH D+ Sbjct: 248 GLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGGGKRKGSFAIYVEPWHADI 307 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFLDL+KN G + R D+ A WIPDLFM+RV N WTL P+E DL + + FE Sbjct: 308 YEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEEWTLMCPNECPDLFKHHSEVFE 367 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y YE E K + + A LW K+L ETG P++ +KD N +S Q+++G + Sbjct: 368 TMYLKYE-----AENKGRKTVKARDLWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 SSNLCTEI +S +E AVCNL SI L N +FD+ +L + R L+ VID N Sbjct: 423 RSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTRNLNKVIDRN 482 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++A+ SN HR IGLG+ G A +L +P+ S A + E E + F A++AS+ Sbjct: 483 YYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKALNQEIFETLYFAAVTASM 542 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 E+A+E G YSS++GS +G F + G ++DE + R WD+L+K VK G+R Sbjct: 543 EMAKEEGPYSSYEGSPISEGEFQYNLWG----IKDE---ELSGRWDWDKLRKEVKKNGVR 595 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ +L LW+E+ Sbjct: 596 NSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVHLGLWNES 655 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + +L +GSI +I+ IP D+K+++ T +E+ +I+ + +R +IDQ+QSLNL+++ Sbjct: 656 LKQELMRANGSIQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNLFMEG 715 Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 + KL ++ AW GLKT YYLR++SA K TL K VPV+ Sbjct: 716 ANFSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNTKKK--EVPVS 764 >gi|302307390|ref|NP_984039.2| ADL057Wp [Ashbya gossypii ATCC 10895] gi|299788978|gb|AAS51863.2| ADL057Wp [Ashbya gossypii ATCC 10895] Length = 890 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 295/804 (36%), Positives = 451/804 (56%), Gaps = 51/804 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + C GL + V + + +Y+G++ +L+ + + P+YA + AR Sbjct: 22 ISRLCYGLDPKHVDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTVHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ T Q + Y + G+ + ++ + + + + + Sbjct: 82 AISNLHKQT-----------TKQFSQVVSDLYHYTNPKNGLHSPMISDEVYEIVMAHKDE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L I+G E PQ MRVA+G+ K+ K+A+ Sbjct: 131 LNSAIVYDRDFQYNYFGFKTLERSYLLRIDGKVAERPQHMVMRVAVGIHGKDI---KKAI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + GI+ L+E AM++K +GG Sbjct: 188 ETYNLMSMRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEGIYDTLKECAMISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVYNNTARYVDQGGNKRPGAFAIYLEPWHSD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V +F+D+RKN G + R D+ A W+PDLFM+RV +N WTLFSP E L D++G+EF Sbjct: 308 VFDFIDIRKNHGKEEIRARDLFPALWVPDLFMRRVQENGDWTLFSPSEAPGLSDVWGEEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE Y R+ RG + I A LW +L ETG P+I +KD CN +S Q+++G Sbjct: 368 EELYERYVREG-RGR----KTIKAQKLWYAILEAQTETGTPFILYKDACNRKSNQKNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVL 632 + SSNLC EI SS EETAVCNL SI L A A +D+DKL + R L Sbjct: 423 IKSSNLCCEIVEYSSPEETAVCNLASIALPAFIAEAADGKTQWYDFDKLHEIAKVVTRNL 482 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VID N + +E AK+SN HR I LG+ G A +L IP+ SP+A E+ + E + Sbjct: 483 NRVIDRNYYPVETAKRSNMRHRPIALGVQGLADAFMILRIPFDSPQAKELNSQIFETLYH 542 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKK 751 A AS+ELA E G Y SFKGS QG+ D + ++ S + WD LK Sbjct: 543 AACEASMELAIEEGPYESFKGSPASQGILQFD-----------MWNHKPSGMWDWDALKA 591 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++ GMRNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L Sbjct: 592 KIIEHGMRNSLLLAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDLV 651 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +WD++M S + +GSI + IP +LK ++ T +E+ +I+ A+ R ++DQ+Q Sbjct: 652 DLGIWDDSMKSHIISDNGSIQGLPNIPQELKDLYKTVWELSQKTIIDMAADRGAFVDQSQ 711 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 SLN+++ P+ +L ++ W GLKT YYLR+++A++ + T+ + A V D Sbjct: 712 SLNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTVDKAVAEQAANNVAD 771 Query: 931 ------PNSSTHSLGIPSSCTSDT 948 P H++G+ ++ SD+ Sbjct: 772 LSRLHRPRYVPHAVGVSAAPVSDS 795 >gi|326435406|gb|EGD80976.1| Rrm1 protein [Salpingoeca sp. ATCC 50818] Length = 779 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 295/735 (40%), Positives = 430/735 (58%), Gaps = 37/735 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ ++ + K P+YA + AR + L + + + A HH + Sbjct: 47 VYTGVTTVELDQLAAETAASFTTKHPDYAILAARIAVSNLHK-MTHKQFSDVIDALHHYV 105 Query: 249 QCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 E G A L+ +E +M VY ++ + +ERDF F + G + L Sbjct: 106 NP----------ETGRPAPLISKETYEQVMANKEVYNSH-IIFERDFNFNFFGFKTLERS 154 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 Y L +NG E PQ FMRVA+G+ ++ + A+E YN +S F ++PTLFNSGT Sbjct: 155 YLLKMNGKVAERPQHMFMRVAIGMHGEDVDA---AIETYNYMSEGFFTHASPTLFNSGTP 211 Query: 365 HPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSCFL T+ DD + GI+ L+ AM++K +GG+G +R G++I GTNG S G Sbjct: 212 IPQLSSCFLLTMKDDSIEGIYDTLKTCAMISKTAGGIGLSVHNIRASGSYIAGTNGHSNG 271 Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 ++P L+V N+TA V+QGG KR GA YLE WH D+ +FL+L+KNTG + +R D+ A Sbjct: 272 LVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHADIFDFLELKKNTGVEEQRARDLFFA 331 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 W+PDLFMKRV N WTL P E L D YG EFE YE YE E K +K+SA Sbjct: 332 LWVPDLFMKRVEANEEWTLMCPHECPGLSDTYGDEFERLYEKYE-----AEGKGRKKVSA 386 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW +L ETG P++ +KD CN +S Q+++G +HSSNLCTEI SS +E AVCNL Sbjct: 387 SKLWFAILDAQTETGTPYMLYKDACNKKSNQKNLGTIHSSNLCTEIIEYSSPDEVAVCNL 446 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSI L + FDY KL + R L+ +IDIN + + +A+KSN HR IG+G+ G Sbjct: 447 GSIALNKFVGDKTFDYKKLHEVTKVLTRNLNKIIDINYYPVPEARKSNMRHRPIGIGVQG 506 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 A L+ +P+ S EA E+ + E I A+ AS E+A G Y +F+GS +G+ Sbjct: 507 LADAFILMRLPFDSDEAREVNRKIFETIYHGALEASTEIASVEGPYETFEGSPTSEGILQ 566 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D + +V+ T W+ L++RVK G+RNS +A PTA+ A I G ++SI Sbjct: 567 FD----MWDVKP------TDLWDWESLRERVKKDGIRNSLLVAPMPTASTAQILGNNESI 616 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y + +SG+F VVN L+ +L + LW + + + ++GSI IE IPDD+K Sbjct: 617 EPYTSNIYSRRVLSGEFQVVNKHLLKDLVEMGLWSDEVKDQIILNNGSIQKIEGIPDDIK 676 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 ++ T +E+ LI+ A+ R +IDQ+QS N+++ +P+ KL ++ AW GLKT Y Sbjct: 677 ALYKTVWELSQRTLIDMAADRGAFIDQSQSFNVHISDPNFGKLTSMHFYAWKRGLKTGMY 736 Query: 902 YLRSRSATSVEKSTL 916 YLRSR+AT+ + T+ Sbjct: 737 YLRSRAATNAIQFTV 751 >gi|317010898|gb|ADU84645.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori SouthAfrica7] Length = 788 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 320/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ L+DRY L N IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLHDRYLLKDANNYPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG+EFE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLSELYGQEFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------------------------SE 595 FKD N +P H G++ SSNLCTEI N++ S Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSN 463 Query: 596 ETAVCN-LGSINLLAHFANNQFDYDKLASTIRTAV------------------------- 629 T N L S ++L + K+A +TAV Sbjct: 464 ITKCANKLTSTDILK--GKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|42490975|gb|AAH66217.1| Ribonucleotide reductase M1 [Mus musculus] Length = 792 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 292/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ S +D + Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D++KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS ELA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|132609|sp|P07742|RIR1_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit Length = 792 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 291/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ S +D + Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F + PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D++KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS ELA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W++ M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNKEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|208434597|ref|YP_002266263.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter pylori G27] gi|208432526|gb|ACI27397.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter pylori G27] Length = 788 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 318/827 (38%), Positives = 450/827 (54%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSINL------------ 607 FKD N +P H G++ SSNLCTEI N++ + G+I Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463 Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631 + +AN D K+A +TAV R+ Sbjct: 464 ITKYANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME IS Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +HAI S LA+E+G Y F+ S W +G+FPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 KVKVNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + W+ + +A++ID LI++A+ RQKWIDQ Q Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 SLN++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|329939693|ref|ZP_08288994.1| ribonucleotide-diphosphate reductase large chain [Streptomyces griseoaurantiacus M045] gi|329301263|gb|EGG45158.1| ribonucleotide-diphosphate reductase large chain [Streptomyces griseoaurantiacus M045] Length = 811 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 313/819 (38%), Positives = 452/819 (55%), Gaps = 70/819 (8%) Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 E + L D V + + E +L ++ LI ++P ++++ AR L Sbjct: 31 ELSADLPDADPGRVAAAALRGRSRHAGEEELRELATEAAAGLISEDPAHSRLAARLLTLT 90 Query: 228 LRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +R E + T + H E L + ++ ARL ++++D D Sbjct: 91 IRAEAASQGVTSFTSSVATGHRE--GLVADRTAAFVRRHA-ARL--DALVDPDA------ 139 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKE----KR 338 D F Y GL+ L+ RY L +R IE PQ F +RVA GLA +E ++ R Sbjct: 140 -----DDRFGYFGLRTLHTRYLLRHPVTRKVIETPQHFLLRVASGLA-EEADRAGAGADR 193 Query: 339 AVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 AVE + L+S ++ S+PTLFNSGTRHPQ+SSCFL P+D L I+ + A L Sbjct: 194 AVEEVAALHGLMSRLEYLPSSPTLFNSGTRHPQMSSCFLLDSPEDELDSIYSRYHQVARL 253 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K++GG+G ++ +R GA I GTNG S G++PFLK + + AVNQGG+RKGA YLE Sbjct: 254 SKHAGGIGLAYSRIRSRGALIRGTNGHSGGIVPFLKTLDASVAAVNQGGRRKGAAAVYLE 313 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 TWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V L DL Sbjct: 314 TWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPSDVPGLTDL 373 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G EF+ AY +A E R + A L+ +M+ L TG W+TFKD N + Q Sbjct: 374 WGAEFDAAY-----RAAEAEGLAVRTLPARELYGRMMRTLASTGTGWMTFKDTANRTANQ 428 Query: 574 --QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---------------F 616 + V+HSSNLCTEI + ETAVCNLGSINL A Sbjct: 429 TAEPGNVIHSSNLCTEILEVTEDGETAVCNLGSINLGAFVREGNTADAGTADAGAADGGI 488 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+++L +T+RTAV LD VID+N + E+A +SN R +GLG+MG Q L L +P+ S Sbjct: 489 DWERLDATVRTAVTFLDRVIDLNFYPTEEAGRSNARWRPVGLGVMGLQDVLFRLRLPFDS 548 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA ++ E + A S ELA G +++ + +GV D ++ Sbjct: 549 PEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTARGVLHPDHY--------DV 600 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++ R W L++R+ GMRN+ +AIAPTATIA+I GV + ++P NL+ + +S Sbjct: 601 ELSWPER--WAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECVEPQVSNLFKRETLS 658 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VN +LV +LK+ WD L+ +GS+ + +P+++++++ TA+E+ L Sbjct: 659 GEFLQVNPYLVADLKRLGRWDADTREALREANGSVEGLTWLPEEVRRLYRTAWELPQRAL 718 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 I+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + ++ Sbjct: 719 IDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAR 778 Query: 917 KGVDGKLNAVP-VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 P V DP + SL P CE CQ Sbjct: 779 AQRPAAEAPAPTVPDPEAVACSLENPEY------CEACQ 811 >gi|73988079|ref|XP_534027.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 1 [Canis familiaris] Length = 792 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 291/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP----------TELWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|217033693|ref|ZP_03439120.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10] gi|216943882|gb|EEC23319.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10] Length = 788 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 320/827 (38%), Positives = 451/827 (54%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------------NL 607 FKD N +P H G++ SSNLCTEI N++ + G+I N Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGTIEFFEEKQLVTTDNH 463 Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631 + AN D K+A +TAV R+ Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME IS Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +HAI S LA+E+G Y F+ S W +GVFPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK+ GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-- 700 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 W+ + +A++ID LI+ A+ RQKWIDQ Q Sbjct: 701 ---TWN--------------------------FYTSAYDIDAKDLIKVAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 S+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|322704073|gb|EFY95672.1| ribonucleoside-diphosphate reductase large chain [Metarhizium anisopliae ARSEF 23] Length = 905 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/777 (37%), Positives = 440/777 (56%), Gaps = 52/777 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y + + + + + H+ +D Sbjct: 82 AVSNLHKQTKKQWSSVVSDLYHYVNPKNERASPMISKDTY--------ECVMRHKDELDS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF ++Y G + L Y L +NG +E PQ MRVA+G+ E Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNIE-- 184 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 R +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + GI+ L+ AM++K Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIDGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Y Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE YE YER+ K R I A LW +L ETG+P++ +KD CN +S Q+ Sbjct: 364 GEEFEALYEKYEREG-----KGRRTIRAQKLWYSILEAQTETGNPFMLYKDACNKKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI S+ +E AVCNL S+ L A + ++D+ KL + VR L Sbjct: 419 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYDEGRYDFKKLHEVTQVVVRNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + +++A+ SN HR IG+G+ G A L +P+ SPEA E+ + E I Sbjct: 479 NKIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A++AS+ELA+E+G YS+FKGS +G+ D + + WD LK++ Sbjct: 539 AALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP----------SDLWEWDTLKQQ 588 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 589 IKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW +AM + + +GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QS Sbjct: 649 MGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQMAADRGAFIDQSQS 708 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923 LN+++ +PS K+ ++ W +GLKT YYLR+++A +V++ LK D + Sbjct: 709 LNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADANV 765 >gi|325286575|ref|YP_004262365.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga lytica DSM 7489] gi|324322029|gb|ADY29494.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga lytica DSM 7489] Length = 825 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 307/816 (37%), Positives = 466/816 (57%), Gaps = 50/816 (6%) Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEK 212 LI F+ ++ V + C GL + + V + +YDG++ S+L+ + T+ Sbjct: 12 LIMFD--KITARVRKLCYGLNALVDPLKVAMRVIEGLYDGVTTSELDNLAAEIAATMTTT 69 Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 P+YAK+ AR + L +K +K+ M+ LY EY G KA LL + Sbjct: 70 HPDYAKLAARISVSNL--------HKNTKKSFSEVMKDLY-EYVNP--RTGKKAPLLSDE 118 Query: 273 MMDFDLVY-----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 + F ++ L + + Y RDF ++Y G + L Y L +NG E PQ MRV++G Sbjct: 119 V--FKVIQDNSEKLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIG 176 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGA 386 + L + + A+E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + GI+ Sbjct: 177 IHLNDLDA---AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYDT 233 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRK 445 L++ A +++ +GG+G VR G++I GTNG S GV+P L+V NDTA V+QGG KRK Sbjct: 234 LKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGVVPMLRVYNDTARYVDQGGGKRK 293 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 G+ Y+E WH D+ EFLDL+KN G + R D+ A WIPDLFM+RV NA WTL P+ Sbjct: 294 GSFAVYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANADWTLMCPN 353 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 E DL+ + KEFE AY +E E K + I A LW K+L ETG P++ +KD Sbjct: 354 ECPDLYKKHDKEFEEAYLAFE-----AEGKGRKTIKARDLWEKILESQIETGTPYMLYKD 408 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 N +S Q+++G + SSNLCTEI ++ +E AVCNL SI L N +FD+ +L Sbjct: 409 AANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKNGEFDHKELFRVT 468 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 + R L+ VID N + + +A+ SN HR IGLG+ G A ++ +P+ S EA ++ E Sbjct: 469 KRVTRNLNTVIDRNYYPVVEAENSNMRHRPIGLGVQGLADAFIMMRMPFTSDEAKKLNQE 528 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E + + A++AS+E+A+E G YSS++GS +G F + G+ DEL + R Sbjct: 529 IFETLYYAAVTASMEMAKEDGPYSSYEGSPISKGDFQHNLWGI---KDDEL----SGRWD 581 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W++L+K V G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN Sbjct: 582 WEKLRKSVLKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 641 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L+ +L Q LW+E++ +L +GSI +I+ IP+D+K+++ T +E+ +I+ + R Sbjct: 642 LLEDLVQLGLWNESLKQELMRANGSIQHIDIIPEDIKELYKTVWELSMKDIIDMSRHRGY 701 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV-----------EK 913 +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR+++A EK Sbjct: 702 FIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVDNSKKKEK 761 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 ++ + KL AV ++T P+ SD E Sbjct: 762 PVVEAPEPKLAAVSAAPKATATELKVNPTPADSDVE 797 >gi|317177497|dbj|BAJ55286.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F16] Length = 788 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 319/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------------- 629 N + AN D K+A +TAV Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|34558071|ref|NP_907886.1| ribonucleotide-diphosphate reductase subunit alpha [Wolinella succinogenes DSM 1740] gi|34483789|emb|CAE10786.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN [Wolinella succinogenes] Length = 788 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 315/840 (37%), Positives = 454/840 (54%), Gaps = 122/840 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L ++ G + + +++ A GL++VS + + D ++ +++ LI Sbjct: 2 LTVIKRSGRVEPLDVTKIQKFTHSAVLGLENVSQSELEVDAKIQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + P + V AR L L Y K + T + +YF R EG Sbjct: 62 TAVDKIDVDAPEWTYVAARLFLYDL--------YHKVNRFTGYGK---LKDYFERGESEG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322 R++ FDL +L + ERD F YLG++ LYDRY + ++ IE+PQ FM Sbjct: 111 ---RIIKGLRGKFDLDFLDTKIVPERDLQFNYLGIKTLYDRYLIKDRSNKPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E + AV+FY+LLS F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEREPNEWAVKFYDLLSRFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF +E A+L+KY GG+G D++ VRGLG++I G + GV+PFLK+ ND A+AV+Q G Sbjct: 228 IFDGYKEMALLSKYGGGIGWDYSKVRGLGSYIDGHKNAAGGVVPFLKITNDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WH D+ +F+DL+KN+G++RRR HD+ A WIPDLFMKRV ++ WTL Sbjct: 288 TRKGAISVYLEPWHTDIFDFIDLKKNSGEERRRAHDLFPALWIPDLFMKRVEEDGAWTLL 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +L+G+ FE Y YE G IK I A LW+K+LT FE G P++ Sbjct: 348 DPHECQDLTNLHGEAFEKRYLEYE--CMEGIIK--ETIRAKELWKKVLTSYFEIGSPFLC 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAV------ 599 FKD N +P H G++ SSNLCTEI N+ EE A+ Sbjct: 404 FKDNANRLNPNAHKGIIRSSNLCTEIFQNTEPNHYLIQVEYEDGSSERFEEHAIITTDTG 463 Query: 600 ---------------------------------CNLGSINLLAHFANNQFDYDKLASTIR 626 CNL SINL + Q D +++ + Sbjct: 464 VEKRANKITSMDSLQGKKVFIAERIAQEGKTAVCNLASINLSK--IHTQEDIERV---VP 518 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 AVR+LDNVID+N + +K K++N RAIGLG+MG L I + S E +E DE Sbjct: 519 IAVRMLDNVIDLNFYPNKKVKRTNLETRAIGLGVMGEAQMLAESKIVWGSQEHLERIDEI 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-- 744 ME +S+HAI AS LA+E+G Y F+GS W +G+FPID LA + ++R Sbjct: 579 MEQVSYHAIKASSTLAKEKGIYPDFEGSNWSKGIFPID----LANSEAKKLVDRGGLFGT 634 Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 WD L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 635 DCDWDSLREQVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVV 694 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L E W+ + +A+++D LI++AS Sbjct: 695 APNLSLE-----TWN--------------------------FYQSAYDLDQNLLIKAASI 723 Query: 863 RQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 RQKWIDQ QS N++ LD+ SGK L+ IY AW +GLK+TYYLRS+S + E + + ++ Sbjct: 724 RQKWIDQGQSTNIFISLDKASGKYLNDIYVNAWKLGLKSTYYLRSQSPQAEENTMDRSIE 783 >gi|317178962|dbj|BAJ56750.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F30] Length = 788 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 319/827 (38%), Positives = 451/827 (54%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------------NL 607 FKD N +P H G++ SSNLCTEI N++ + G+I N Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTDNN 463 Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631 + AN D K+A +TAV R+ Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME IS Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +HAI S LA+E+G Y F+ S W +G+FPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-- 700 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 W+ + +A++ID LI++A+ RQKWIDQ Q Sbjct: 701 ---TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 S+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|308063531|gb|ADO05418.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Sat464] Length = 788 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 317/829 (38%), Positives = 452/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++ WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDTMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTA-------------------------V 629 N + +AN D K+A +TA V Sbjct: 462 NNITKYANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|269963258|ref|ZP_06177591.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832006|gb|EEZ86132.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 752 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 284/753 (37%), Positives = 439/753 (58%), Gaps = 40/753 (5%) Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLE 226 E GL+ V V +YDG+ ++++ L ++ +L + P+YAK+ AR ++ Sbjct: 23 EALADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVS 81 Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L++E T+ Y + E+ L Y ++ K + E M+D Sbjct: 82 SLQKE--TSGYATATRELS-EIGILSDTY----VDFAAKNQFALEEMID----------- 123 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 Y+RD+ F+Y G + L Y L + G +E PQ FMRVA+ +A + E+ + E Y+LL Sbjct: 124 YKRDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLL 180 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405 S ++ +TPTLFN+G + QLSSCFL + +D + GI+ L++ A+++K +GG+G Sbjct: 181 SHGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIH 240 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464 +R GA I GTNG S G++P LKV N+TA V+QGG KRKG+ YLE WH D+E FLD Sbjct: 241 NIRATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLD 300 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 LRKN G + R D+ A W+PDLFM+RV +A WTLFSP L DLYG EF Y+ Sbjct: 301 LRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFSPHNTKGLSDLYGAEFTQKYQE 360 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 YER + I A L +++ ETG P++ +KD CN +S Q+++G + SSNL Sbjct: 361 YERMG-----LGVKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNL 415 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C EI S+ +ETA CNL S+ L ++ FD+DKL + A++ LD VID+N H + Sbjct: 416 CAEIMEVSTPDETAACNLASMALPKFVTDSGFDFDKLHQVTKVAIKNLDRVIDVNYHPTD 475 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 K +KSNH HR +GLG+ G +H+P+ S EA+++ + E + ++ AS E+A + Sbjct: 476 KIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQLNRDIAETMYHASLEASCEIAAQ 535 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +GAYSS+ GS G F D + DE +SR W +LK+++ G+RNS + Sbjct: 536 KGAYSSYDGSPISHGQFQFD-------LWDE---QPSSRWDWSQLKRQIAEHGVRNSLLI 585 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ A I G +++ + N+Y + +SG+F ++N LV++L+QR LW + + Sbjct: 586 AQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAI 645 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 ++GS+ I+ IPDDL+ ++ T +EI +I+ ++ R ++ Q+QSLNL+L P+ + Sbjct: 646 ILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQ 705 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ ++ AW GLKT YYLRS+ +T+ K T+ Sbjct: 706 INAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738 >gi|224437766|ref|ZP_03658713.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313144212|ref|ZP_07806405.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313129243|gb|EFR46860.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter cinaedi CCUG 18818] Length = 792 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 314/825 (38%), Positives = 452/825 (54%), Gaps = 118/825 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ A GL+ V+ + + D ++ +++ LI Sbjct: 5 ITVVKRNGRIEPLDVSKIQKHTSAAVEGLEGVTQSELEVDAKILFKDKITTEEIQQTLIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V AR L L +V T YKK + +YF + E Sbjct: 65 TAVDKIDVDAPNWSFVAARLFLYDLYHKVTGWTGYKKLE------------DYFIQGENE 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 G RLL +DL +L + +K ERD F YLG++ LYDRY L N IE+PQ F Sbjct: 113 G---RLLRGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNQPIELPQHMF 169 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + AV+FY+++S F +C+TPTL N+ T QLSSCF+ + PD++ Sbjct: 170 MAIAMFLAQNENDCNAWAVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTPDNIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF A +E A+L+KY GG+G D++ VRGLG++I G + GV+PFLK+AND A+AV+Q Sbjct: 230 GIFDAYKEMALLSKYGGGIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIAVDQL 289 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH DV EF+DLRKN+G++RRR HD+ A WI DLFMKRV N WTL Sbjct: 290 GTRKGAIATYLEVWHNDVFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANEFWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + +L +LYG+EFE Y YE+ E + ++ A LW+K+LT FE+G P++ Sbjct: 350 FDPYQCPELTELYGEEFEAKYLEYEQN----EHILKHRVVAKDLWKKILTNYFESGLPFL 405 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------------- 595 FKD N +P H G++ SSNLCTEI N++ Sbjct: 406 CFKDNANRANPNGHAGIIRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEVELDN 465 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV------------------RVL--- 632 A + S++ L F ++A TAV RVL Sbjct: 466 GVRKAANKITSVDSL--LGKKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLPIA 523 Query: 633 ----DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNVID+N + K K +N +RAIGLG+MG L I + S E + DE ME Sbjct: 524 IRMLDNVIDLNFYPNRKVKVTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEVME 583 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ISF+AIS+S +LAQE+G Y F GS W +G+ PID LA ++R + + Sbjct: 584 LISFYAISSSSDLAQEKGKYPQFDGSNWSKGIMPID----LASKEALKLVDRGGLFSQQC 639 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+K+VKT G+RN MAIAPT++I+ + G +Q+I+P Y+ +++ N+SG VV Sbjct: 640 DWESLRKKVKTQGIRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVVVP 699 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L D W+ + +A++ID LI++A+ RQ Sbjct: 700 HL-----SADTWN--------------------------YYISAYDIDQTLLIKAAAVRQ 728 Query: 865 KWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 KWIDQ QS N++ LD+ SGK L+ IY AW +GLK+TYYLRS+S Sbjct: 729 KWIDQGQSTNVFVRLDKASGKMLNDIYMLAWRLGLKSTYYLRSQS 773 >gi|296479831|gb|DAA21946.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus] Length = 791 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ L+ YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ +V + I A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYERYEKEG-----RVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W+ LK+++ Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|149719333|ref|XP_001499936.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase subunit M1) (Ribonucleotide reductase large subunit) [Equus caballus] Length = 792 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 291/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ + +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKPTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ +E Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HSEDIDA 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTSEHTYDFQKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +L++E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLSREDGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I+ IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWEISQKTILKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|322696603|gb|EFY88393.1| ribonucleoside-diphosphate reductase large chain [Metarhizium acridum CQMa 102] Length = 905 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 286/759 (37%), Positives = 433/759 (57%), Gaps = 47/759 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y + + + + + H+ +D Sbjct: 82 AVSNLHKQTKKQWSSVVSDLYHYVNPKNERASPMISKDTY--------ECVMRHKDELDS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF ++Y G + L Y L +NG +E PQ MRVA+G+ E Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNIE-- 184 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 R +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + GI+ L+ AM++K Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Y Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE YE YER+ K R + A LW +L ETG+P++ +KD CN +S Q+ Sbjct: 364 GEEFEALYEKYEREG-----KGRRTVRAQKLWYSILEAQTETGNPFMLYKDACNKKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI S+ +E AVCNL S+ L A N+ +D+ KL + VR L Sbjct: 419 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYNEGRYDFKKLHEVTQVVVRNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + +++A+ SN HR IG+G+ G A L +P+ SPEA E+ + E I Sbjct: 479 NKIIDVNYYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A++AS+ELA+E+G YS+FKGS +G+ D + + WD LK++ Sbjct: 539 AALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP----------SDLWEWDTLKQQ 588 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 589 IKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW +AM + + +GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QS Sbjct: 649 MGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQMAADRGAFIDQSQS 708 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 LN+++ +PS K+ ++ W +GLKT YYLR+++A + Sbjct: 709 LNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAA 747 >gi|61557388|ref|NP_001013254.1| ribonucleotide reductase M1 [Rattus norvegicus] gi|55250768|gb|AAH85906.1| Ribonucleotide reductase M1 [Rattus norvegicus] gi|149068638|gb|EDM18190.1| ribonucleotide reductase M1 (mapped), isoform CRA_b [Rattus norvegicus] Length = 792 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 448/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLVY- 280 + L +E +K M+ LY YI G + ++ S ++ + + Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLEIVMAHK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D++KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IP+DLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|256421018|ref|YP_003121671.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga pinensis DSM 2588] gi|256035926|gb|ACU59470.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga pinensis DSM 2588] Length = 802 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 293/791 (37%), Positives = 450/791 (56%), Gaps = 51/791 (6%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG + ++ VE+ C GL DV+ K++ + +YDG++ S+L+ Sbjct: 3 VIKRDGHKEAVKFDKITARVEKLCYGLNAEYVDAIDVAKKVI-----QGLYDGVTTSELD 57 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ +L K P+YA + +R + L + + + K M+ LY Y Sbjct: 58 NLAAETAASLTTKHPDYALLASRIAVSNLHKNTVKSFSKT--------MENLY-----NY 104 Query: 260 IEE--GVKARLLHESMMDFDLVYLA---NDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 I+ G A LL + + + + + A + + Y+RDFAF+Y G + L Y L ++G Sbjct: 105 IDPKVGKPAPLLADDVYEIVMKHAAILDSSIIYDRDFAFDYFGFKTLERSYLLKLDGKVA 164 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FMRV++G+ ++ + ++ YNL+S F +TPTLFN+GT PQ+SSCFL Sbjct: 165 ERPQHMFMRVSVGIHKEDIDA---VIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLL 221 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ DD + GI+ L++ A +++ +GG+G +R G++I GTNG S G+IP L+V ND Sbjct: 222 TMQDDSIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYISGTNGTSNGIIPMLRVFND 281 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+R Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRR 341 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +N W+LF P E LH+ +G+EFE Y YE+ E + + + A LW +L Sbjct: 342 VEENGDWSLFCPHEAPGLHECWGEEFEKLYTKYEK-----ENRARKTVKAQDLWFAVLDA 396 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD N +S QQ++G + SSNLCTEI + + E AVCNL S+ L Sbjct: 397 QIETGTPYLLYKDSANRKSNQQNLGTIKSSNLCTEIIEYTDANEVAVCNLASLALPRFVI 456 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + QFD++KL A L+ +ID N + +++A+ SN HR IGLG+ G A L+ Sbjct: 457 DGQFDHEKLYEVTYQAALNLNRIIDNNFYPVDEARNSNLRHRPIGLGVQGLADAFILMRY 516 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S EA ++ E E I F A++AS +LA + GAY ++ GS +G+ D G+ Sbjct: 517 PFESEEAKKLNSEIFETIYFAALNASKDLAIKDGAYETYAGSPVSKGILQFDMWGVTP-- 574 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + R W LK +K G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 575 --------SPRWDWTSLKGEIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTR 626 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN L+ +L + LWD M + + +GSI +I IP +K+++ T +EI Sbjct: 627 RVLSGEFVVVNKHLLKDLVELGLWDNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWEIK 686 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +I+ A+ R +I Q+QSLNL++D PS KL ++ AW GLKT YYLR+++A Sbjct: 687 QRTIIDMAADRGAFICQSQSLNLFVDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAAQA 746 Query: 912 EKSTLKGVDGK 922 + T++ G+ Sbjct: 747 VQFTVEKQGGQ 757 >gi|291384376|ref|XP_002708776.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain [Oryctolagus cuniculus] Length = 792 Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----SYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTE+ +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTPEHTYDFKKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++G +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEHGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|224083844|ref|XP_002307143.1| predicted protein [Populus trichocarpa] gi|222856592|gb|EEE94139.1| predicted protein [Populus trichocarpa] Length = 817 Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust. Identities = 288/763 (37%), Positives = 434/763 (56%), Gaps = 54/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR V++ ++K Sbjct: 38 LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYL 296 QK+ ++ +Y + + G+KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TQKSFSETIKIMYNHFNDK---SGLKAALIADDIYEIIMKNSARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRVA+G+ + + A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---AIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSAHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH DV EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P+E L D +GKEFE Y YER Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGKEFEELYTRYERNG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINLL-----------AH---------FANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L +H F + FD++KLA L+ Sbjct: 439 TETAVCNLASIALPRFVREMGVPVESHPSKLVGSRGFKSRYFDFEKLAEVTGVVTSNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E A++SN HR IG+G+ G LL + + SPEA ++ + E I +HA Sbjct: 499 IIDVNYYPVETARRSNFRHRPIGIGVQGLADTFILLGMSFDSPEAQKLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS E+A G Y +++GS +G+ D G+ WD L++ + Sbjct: 559 LKASSEIAAREGPYETYEGSPVSKGILQPDMWGVTPS---------NLLWDWDALREMIS 609 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 610 KNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 669 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW A+ + + Y DGS+ NI IP+DLK I+ T +EI L++ A R +IDQ+QSLN Sbjct: 670 LWSPALKNKIIYEDGSVQNIPEIPNDLKFIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 729 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+P+ KL ++ AW GLKT YYLRSR+A K T+ Sbjct: 730 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTV 772 >gi|32267273|ref|NP_861305.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter hepaticus ATCC 51449] gi|32263326|gb|AAP78371.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC 51449] Length = 791 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 319/815 (39%), Positives = 452/815 (55%), Gaps = 120/815 (14%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEK 227 A GL+ VS + + D ++ +++ LI ++ I+ PN++ V AR L Sbjct: 29 AVEGLEGVSQSELEVDAKILFKDKITTEEIQQTLIKTAVDKIDVNTPNWSFVAARLFLYD 88 Query: 228 LRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L +V T YKK + EYF + EG +L+ +DL +L + +K Sbjct: 89 LYHKVTGWTGYKKLE------------EYFEQGEREG---KLISGIKEKYDLAFLDSHIK 133 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 ERD F YLG++ LYDRY L + +R IE+PQ FM +AM LA E + AV+FYN+ Sbjct: 134 PERDLQFNYLGIKTLYDRYLLKDSNNRPIELPQHMFMAIAMFLAQNEKDCNAWAVKFYNM 193 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S F +C+TPTL N+ T QLSSCF+ + PD++ GIF A +E A+L+KY GG+G D++ Sbjct: 194 ISLFEVICATPTLANARTTRHQLSSCFVGSTPDNIEGIFDAYKEMALLSKYGGGIGWDFS 253 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRGLG+ I G + GV+PFLK+AND A+AV+Q G RKGA+ YLE WH D+ +F+DL Sbjct: 254 RVRGLGSFIDGHKNAAGGVVPFLKIANDVAIAVDQLGTRKGAIATYLEIWHNDIHDFIDL 313 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RKN+G++RRRTHD+ A WI DLFMKRV N WTLF P E +L +LYG+ FE Y Y Sbjct: 314 RKNSGEERRRTHDLFPAIWICDLFMKRVESNEFWTLFDPYECPELTELYGEAFEAKYIEY 373 Query: 526 ERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E Q+D KV + +I A LW+K+LT FE+G P++ FKD N +P H G++ SSNL Sbjct: 374 E-QSD----KVLKSRILAKDLWKKILTNYFESGLPFLCFKDNANRVNPNAHAGIIRSSNL 428 Query: 585 CTEITLNSS--------------------SEETAVCN-----------LGSINLLAHFAN 613 CTEI N++ EE + N + SIN Sbjct: 429 CTEIFQNTNPNHYVVEVEFEDGSKVVYEEKEEVKLDNGMCKRANKITSVDSIN-----GR 483 Query: 614 NQFDYDKLASTIRTAV------------------RVL-------DNVIDINCHTIEKAKK 648 F ++A TAV RVL DNVID+N + K K Sbjct: 484 KVFITSRIAQGGATAVCNLASVNLSKINTKEDIERVLPIAIRMLDNVIDLNFYPNRKVKV 543 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG+MG L HI + S E + DE ME +SF+AI +S LAQE+G Y Sbjct: 544 TNMQNRAIGLGVMGEAEMLARSHIDWGSEEHLIKIDEIMELVSFYAIESSANLAQEKGKY 603 Query: 709 SSFKGSLWDQGVFPIDSIGLLA-EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 F+GS W +G+FPID A ++ D + + + W+ L+ +VKT GMRN MAIA Sbjct: 604 PQFEGSNWSKGIFPIDMANKEALKIVDRGGL-FSQQCDWESLRAKVKTQGMRNGYLMAIA 662 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++I+ + G +Q+I+P Y+ + + N+SG VV L D W+ Sbjct: 663 PTSSISILVGTTQTIEPVYRKKWYEENLSGLIPVVVPHL-----NLDTWN---------- 707 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LDEPSGKKL 885 + +A++I+ +I++A+ RQKWIDQ QS N++ LD+ SGK L Sbjct: 708 ----------------YYVSAYDIEQTHIIKAAAVRQKWIDQGQSTNIFVRLDKASGKML 751 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 + IY AW +GLK+TYYLRS+S + E+ + V+ Sbjct: 752 NDIYTLAWKLGLKSTYYLRSQSPEAEEQVMDRSVE 786 >gi|311263373|ref|XP_003129661.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 1 [Sus scrofa] Length = 791 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 291/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ L+ YI G + ++ S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVARSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L I+G E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YERQ V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYERQG-----HVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|164519000|ref|NP_001106767.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus] gi|158455067|gb|AAI09487.2| RRM1 protein [Bos taurus] Length = 791 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ L+ YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ +V + I A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYERYEKEG-----RVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W+ LK+++ Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGVRNSLLIAPMPTASTVQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|149634836|ref|XP_001505371.1| PREDICTED: similar to M1 subunit of ribonucleotide reductase [Ornithorhynchus anatinus] Length = 792 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKYPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY Y+ G + ++ ++ +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYVNPHNGKHSPMVAKTTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRVA+G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVAVGIHEEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNRDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDTCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSRDEVAVCNLASLALNMFVTLEHTYDFKKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPIPEASTSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNQQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA++ G Y +++GS +G+ D + T W LK+++ Sbjct: 541 DASCDLAKDHGPYETYQGSPVSKGILQYDMWNVTP----------TDLWDWKALKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IP+DLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|109107703|ref|XP_001113010.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 1 [Macaca mulatta] Length = 792 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 290/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W+ LK+ + Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKENIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|225438479|ref|XP_002278202.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082544|emb|CBI21549.3| unnamed protein product [Vitis vinifera] Length = 808 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 294/800 (36%), Positives = 443/800 (55%), Gaps = 57/800 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR V++ ++K Sbjct: 38 LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y + R G+KA L+ + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKEMYNHFNER---SGLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I G +E PQ MRV++G+ + + A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKIQGKVVERPQHMLMRVSVGIHKDDIDS---AIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P+E L D +G+EF Y YER+ Sbjct: 324 RARDLFYALWVPDLFMERVQSNGHWSLFCPNEAPGLADCWGQEFVDLYTQYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTEI +S+ Sbjct: 379 KAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSA 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 +ETAVCNL SI L + N FD+DKLA L+ Sbjct: 439 DETAVCNLASIALPRYVREKGVPMESNPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E AK+SN HR IGLG+ G LL + + SPEA ++ + E I +HA Sbjct: 499 IIDVNYYPVETAKRSNLRHRPIGLGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA G Y ++ G +G+ D G+ +SR WD L+K + Sbjct: 559 LKASCELAMREGPYETYDGCPVSKGILQPDMWGVTP----------SSRWDWDALRKMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 ENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + + Y +GS+ + IP+DLK I+ T +EI L++ A R +IDQ+QSLN Sbjct: 669 LWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 +++D+P+ KL ++ AW GLKT YYLRSR+A K T+ L T + Sbjct: 729 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSILQERTKTADDD 786 Query: 934 STHSLGIPSSCTSDTECEVC 953 T + S T+ EC C Sbjct: 787 DTKMAQMVCSLTNREECMAC 806 >gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max] Length = 809 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 291/801 (36%), Positives = 444/801 (55%), Gaps = 58/801 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y + R +KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKVMYYHFNER---SAMKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRVA+G+ + + AV Y+++S F ++P Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---AVRTYHMMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+ DLFM+RV N W+LF P+E L D +G+EFE Y YER+ Sbjct: 324 RARDLFYALWVSDLFMERVQSNGQWSLFCPNEAPGLADCWGEEFEKLYTQYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L + N FD+DKL L+ Sbjct: 439 TETAVCNLASIALPRYVREKGVPMESHPSKLVGSRGSKNRYFDFDKLGEVTAIVATNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + ++ A++SN HR IG+G+ G LL + + SPEA ++ + E I +HA Sbjct: 499 IIDVNYYPVDTARRSNMRHRPIGIGVQGLADTFILLGVAFDSPEAQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + S ELA + G Y ++ GS +G+ D G++ +SR WD L++ + Sbjct: 559 LKTSSELAAKEGPYETYSGSPISKGILQPDMWGVMP----------SSRWDWDALREMIA 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 KTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + +++ Y DGS+ I IPDDLK I+ T +EI L++ A R +IDQ+QSLN Sbjct: 669 LWSPTIKNNIIYEDGSVQKIPEIPDDLKIIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT-DPN 932 +++D+P+ KL ++ AW GLKT YYLRSR+A K T+ L+ P+ + + Sbjct: 729 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSMLHEKPMAEEED 786 Query: 933 SSTHSLGIPSSCTSDTECEVC 953 +T + S T+ EC C Sbjct: 787 DNTKMAQMVCSLTNREECLAC 807 >gi|332673526|gb|AEE70343.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter pylori 83] Length = 788 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 319/829 (38%), Positives = 452/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVL---- 632 N + AN D K+A +TAV RV+ Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 633 ---DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 DNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEYQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|78778290|ref|YP_394605.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurimonas denitrificans DSM 1251] gi|78498830|gb|ABB45370.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Sulfurimonas denitrificans DSM 1251] Length = 788 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 311/840 (37%), Positives = 466/840 (55%), Gaps = 121/840 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G + +++ A GL +VS + + + DG++ +++ LI Sbjct: 2 VTIIKRNGRTEKLDISKIQKYTSAAVEGLSNVSQSELEVDAQIHFRDGITSKEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V +R L L EV C YF R +EG Sbjct: 62 TAVDKIDIDAPNWTFVASRLFLFNLYHEV-----------NGFTGYCSLENYFERGEKEG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 RLL+ ++L L +K ERD F YLG++ LYDRY + N + IE+PQ FM Sbjct: 111 ---RLLYGLKGMYNLEELEKHIKPERDMLFNYLGVKTLYDRYLIKDKNSNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA +E +KE+ A++FYN++S+F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 AIAMFLAQREEKKEEWAIKFYNMISTFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + E AML+K+ GG+G DWT VR +G++I G + G +PFLK+ ND AVAV+Q G Sbjct: 228 IFDSYAEMAMLSKFGGGIGWDWTNVRSMGSYIDGHKNAAGGTVPFLKITNDIAVAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WHID+ +FLDL+KN+G++RRR HD+ A W+ DLFM+RV ++A WTLF Sbjct: 288 TRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPALWLNDLFMQRVEEDAIWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +L L+G+EF Y E+ E + K+ A LW+K+LT FETG P++ Sbjct: 348 DPYDCRELTTLHGEEFNKKYVELEKN----EAIIKEKLKAKNLWKKILTSYFETGSPFLC 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------SSEE--------- 596 FKD N +P H G++ SSNLCTEI N+ S EE Sbjct: 404 FKDNANRANPNSHSGIIRSSNLCTEIFQNTNPNHYKIKFIFQNGDSVSYEEEEIIEVDSG 463 Query: 597 --------TAVCNLG----------------------SINLLAHFANNQFDYDKLASTIR 626 TA+ ++G S+NL N + D D++ + Sbjct: 464 LKKPAKKVTALDSIGGREIYVVEKEKINGDTAVCNLASVNL--SRINTKEDIDRV---VP 518 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R LDNVID+N + IEK K++N RAIGLG+MG L I + + E + DE Sbjct: 519 IAIRALDNVIDLNFYPIEKVKRTNMKTRAIGLGVMGEAQMLAQEGISWGTQEHFDKIDEI 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRL 744 ME +SF+AISAS ++A E+G+YS ++GS W +G+ P+D AEV++ + S Sbjct: 579 MESVSFNAISASSDIALEKGSYSEYEGSKWSRGIMPMDHA--TAEVKNLVDRGGLFASAY 636 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+EL+ +VK G+RN MAIAPT++I+ + G +Q+I+P ++ + + N+SG VV Sbjct: 637 EWEELRTKVKNQGIRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWYEENLSGLIPVV-- 694 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 V EL + W + A++++ LI++A+ RQ Sbjct: 695 --VPELSP-ETW--------------------------AYYTPAYDLNQTLLIKAAAIRQ 725 Query: 865 KWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLKGV 919 KW+DQ QSLN++ LD+ SGK L+ IY AW +GLK+TYYLRS+S A+ VE +++ V Sbjct: 726 KWLDQGQSLNIFITLDKASGKYLNEIYMLAWKLGLKSTYYLRSQSPEMASDVEDRSMECV 785 >gi|73988085|ref|XP_862223.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 5 [Canis familiaris] Length = 793 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 291/763 (38%), Positives = 447/763 (58%), Gaps = 43/763 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP----------TELWDWKLLKEKIAN 590 Query: 756 -IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R Sbjct: 591 KYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 IHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 753 >gi|154149160|ref|YP_001407242.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter hominis ATCC BAA-381] gi|153805169|gb|ABS52176.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter hominis ATCC BAA-381] Length = 793 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 314/830 (37%), Positives = 452/830 (54%), Gaps = 121/830 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + ++ E+ GL +VS + + D +S +++ LI Sbjct: 1 MKVVKRNGRTEELDISKIRKYTRESIEGLDNVSLSELELDAKIQFRDMISTEEIQQTLI- 59 Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +T +EK +PN+ V AR L L +V T ++ ++ EYF R Sbjct: 60 --KTAVEKIDVDQPNWTFVAARLFLYDLYHKVTTF-------NGYNSLR----EYFERGE 106 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319 +EG ++L +DL L + +K +RD F YLG++ LYDRY L N +R IE+PQ Sbjct: 107 KEG---KILLGLKEKYDLDDLQDYIKPQRDLQFTYLGIKTLYDRYLLKDNEARPIELPQQ 163 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FM +AM LA E + + A +FY+LLS F MC+TPTL N+ T QLSSC++ + PD+ Sbjct: 164 MFMAIAMFLAQNELDCQTWAKKFYDLLSKFEVMCATPTLSNARTPRHQLSSCYVGSTPDN 223 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GIF + +E A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+ Sbjct: 224 IEGIFDSFKEMALLSKFGGGIGWDWSKVRAIGGSIDGNKNAAGGIIPFLKITNDIAVAVD 283 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G RKGA+ Y+ETWH+D+ +FLDLRKN+G++RRR H++ A WI DLFMKR+ +NA W Sbjct: 284 QLGTRKGAIATYIETWHMDIGDFLDLRKNSGEERRRAHELFPALWINDLFMKRLEKNANW 343 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558 TLF P EVSDL D YG+EFE Y YE + K+ + I A LW+K+LT FE+G Sbjct: 344 TLFDPAEVSDLCDCYGEEFEKKYIEYENNS-----KISKSLIPAKELWKKILTSCFESGM 398 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSINLLAHFANNQ 615 P++ FKD N +P H G++ SSNLCTEI N+ + N GSI L + Sbjct: 399 PFLCFKDNANKANPNAHEGIIRSSNLCTEIFQNTRPNHYKIKVTFNDGSIKLFEEEDDIT 458 Query: 616 FD---------------------------YDK-------LAS--------------TIRT 627 D YD+ LAS + Sbjct: 459 LDNGLIKKGKKITSLDALDGKDVFCVEKAYDEGLTAVCNLASINLSKINTKEDIQRVMPI 518 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVI++N + K K +N RAIGLG+MG L IP+ S E E D+ M Sbjct: 519 AIRMLDNVINLNFYPHIKVKHTNLKTRAIGLGVMGEAQMLATKGIPWGSYEHFEFIDKIM 578 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--- 744 E IS++AI AS LA E+G Y F+GS W +G+ PID LA + + R Sbjct: 579 ENISYNAILASSNLAIEKGKYPDFEGSNWSKGIMPID----LANEEAKALVKRGGLFDED 634 Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 635 GCDWKYLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV 694 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + + D +++ A+E+D LI++A+ Sbjct: 695 -------------------------------VPNLSPDTWQLYTPAYELDQRLLIKAAAV 723 Query: 863 RQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 RQKWIDQ QSLN++ L++ S + L+ IY AW +GLK+TYYLRS+S S Sbjct: 724 RQKWIDQGQSLNIFISLEKSSARILNDIYTLAWKLGLKSTYYLRSQSPDS 773 >gi|27261144|gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max] Length = 808 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 294/800 (36%), Positives = 441/800 (55%), Gaps = 57/800 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYACLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y + R G+KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKIMYYHFNER---SGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRVA+G+ + + AV+ Y+++S F ++P Sbjct: 147 GFKTLERSYLLKVQGQVLERPQHMLMRVAVGIHKDDIDS---AVKTYHMMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAIISKSAGGIGVSIHDIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P E L D +G++FE Y YER+ Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLTDCWGEKFEELYLQYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A +LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTEI SS Sbjct: 379 KAMKVVQAQSLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSP 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L + N FD+DKLA L+ Sbjct: 439 TETAVCNLASIALPRYVREKGVPMESHPSKLVGSTCSGNRYFDFDKLAEITALVTTNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID+N + +E AK+SN HR IG+G+ G LL + + SPEA ++ E E I +HA Sbjct: 499 VIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKEIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + S LA + G Y ++ GS +G+ D G+ ++R WD L++ + Sbjct: 559 LKTSCGLAAKEGPYETYSGSPISKGILQPDMWGVAP----------SNRWDWDALREMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + + Y DGS+ I IP DLK I+ T +EI L++ A+ R +IDQ+QSLN Sbjct: 669 LWSPTLKNKIIYEDGSVQKIPEIPADLKNIYKTVWEIKQRTLVDMAADRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 +++D+P+ KL + AW GLKT YYLRSR+A K T+ L + + Sbjct: 729 IHMDQPNFGKLTSLQFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSALREKSNVEDDD 786 Query: 934 STHSLGIPSSCTSDTECEVC 953 +T + S T+ EC C Sbjct: 787 NTKMAQMVCSLTNRDECLAC 806 >gi|86132509|ref|ZP_01051103.1| ribonucleoside-diphosphate reductase large chain [Dokdonia donghaensis MED134] gi|85817070|gb|EAQ38254.1| ribonucleoside-diphosphate reductase large chain [Dokdonia donghaensis MED134] Length = 874 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 299/793 (37%), Positives = 449/793 (56%), Gaps = 48/793 (6%) Query: 166 VEEACSGLQDVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V++ C L D + +S + +YDG++ S+L+ ++ ++ P+YAK+ AR Sbjct: 22 VKKLCYELSDFVDPVKISMRVIEGLYDGVTTSELDNLAAETAASMTTSHPDYAKLAARIS 81 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---- 280 + L +K +K+ M LY + V R ++ M D VY Sbjct: 82 VSNL--------HKNTKKSFSEVMTDLY---------QYVNPRTGKKAPMVADEVYKVIM 124 Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 L + + Y RDF ++Y G + L Y L ING E PQ MRV++G+ L + E Sbjct: 125 DNKDELDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMRVSIGIHLNDLEA 184 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 K E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + GI+ L++ A ++ Sbjct: 185 AK---ETYMLMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEGIYDTLKQTAKIS 241 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 + +GG+G +R GA+I GTNG S G++P LKV NDTA V+QGG KRKG+ Y+E Sbjct: 242 QSAGGIGLSIHNIRAKGAYIGGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGSFAIYME 301 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +FLDL+KN G + R D+ A WI DLFMKRV ++ WTL P+E DL ++ Sbjct: 302 PWHADIFDFLDLKKNHGAEEMRARDLFYAMWISDLFMKRVQEDGKWTLMCPNECPDLFNV 361 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G+EFE Y YE Q +RG R I A LW K++ ETG P++ +KD N +S Q Sbjct: 362 HGEEFEALYTKYE-QEERGR----RTIKARELWEKIMESQIETGTPYMLYKDAANRKSNQ 416 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +++G + SSNLCTEI +S +E AVCNL SI L N FD+ +L + A + L+ Sbjct: 417 KNLGTIRSSNLCTEILEYTSEDEVAVCNLASIALPMFVKNGAFDHQELYNITVRATKNLN 476 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 VID N + + +A+ SN HR IGLG+ G L +P+ S EA ++ E E + F Sbjct: 477 KVIDRNYYPVIEAENSNMRHRPIGLGVQGLADTFIKLRLPFTSDEAKKLNQEIFETLYFA 536 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A++AS ++A+ G Y SF+GS QG F + L ++DE + R W L+K V Sbjct: 537 AVTASKDMAKVEGPYQSFEGSPISQGEFQYN----LWNIKDE---ELSGRWDWASLRKEV 589 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVAL 649 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +LW++ + + + +GSI I+ IP DLK+++ T +E+ +I+ + +R +IDQ+QSL Sbjct: 650 NLWNDDLKAAIMRANGSIQGIDVIPADLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 NL+++ + KL ++ AW GLKT YYLR++SA +K TL K PVT P Sbjct: 710 NLFMEGANFAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAKKFTL---SAKKKEAPVTAPT 766 Query: 933 SSTHSLGIPSSCT 945 + + ++ T Sbjct: 767 APKQQVAARAAQT 779 >gi|5006420|gb|AAD37491.1| ribonucleotide reductase M1 subunit [Homo sapiens] Length = 792 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 445/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa Japonica Group] Length = 814 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 286/764 (37%), Positives = 432/764 (56%), Gaps = 57/764 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEY 295 +K+ ++ +Y + R G+ A L+ +E +M + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKDMYGHFNER---SGLNAPLVAHDVYEVIMK-NASRLDSEIIYDRDFDYDY 145 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + L Y L + G +E PQ MRV++G+ + E A++ Y+L+S F ++ Sbjct: 146 FGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHAS 202 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 203 PTLFNAGTTRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYI 262 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEE 322 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A W+PDLFM+RV N W+LF P+E L D +G EFE Y YER+ + Sbjct: 323 HRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLADCWGDEFEKLYTKYEREGKAKK 382 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 I + A LW +L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 383 I-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437 Query: 594 SEETAVCNLGSINL--------------------LAHFANNQFDYDKLASTIRTAVRVLD 633 ETAVCNL SI L + N FD+DKLA T L+ Sbjct: 438 PTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLN 497 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +IDIN + +E AK+SN HR IG+G+ G LL +P+ SPEA ++ + E I FH Sbjct: 498 KIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFH 557 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 ++ AS ELA + G Y +++GS +G+ D ++ + R W L+ + Sbjct: 558 SLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVP----------SDRWNWPSLRSTI 607 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 608 SKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +W A+ + + Y DGS+ + IPDDLK I+ T +EI L++ A R +IDQ+QSL Sbjct: 668 GVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSL 727 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+++++P+ KL ++ AW GLKT YYLR+R+A K T+ Sbjct: 728 NVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771 >gi|301166950|emb|CBW26529.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha [Bacteriovorax marinus SJ] Length = 785 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 285/761 (37%), Positives = 435/761 (57%), Gaps = 44/761 (5%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--- 232 + ++ S+ + ++DG+S +L+ ++ L + P+Y+K+ R + L +E Sbjct: 34 IDPSLITSKVIEGIFDGISTPELDKLAGETAAYLSTQHPDYSKLAGRIAVSNLHKETRGC 93 Query: 233 ----LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 + +Y AT + E + +E A +L ++ D + Sbjct: 94 FSENIKEMYNYVNPATGEMAPLISKELYEVVME---NAEMLDTAVDD------------K 138 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RDF ++Y G + L Y L ++G E P MRV++G+ + + K A+E YNL+S Sbjct: 139 RDFNYDYFGFKTLERSYLLKMDGKITERPGQMLMRVSVGIHMNDM---KAAIETYNLMSE 195 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 +F ++PTLFNSGT PQLSSCFL T+ DD + GI+ L+++A++++ +GG+G + Sbjct: 196 KYFTHASPTLFNSGTSKPQLSSCFLLTMKDDSIEGIYDTLKQSALISQSAGGIGLSIHNI 255 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R G+ I GTNG S G++P LKV NDTA V+QGG KRKGA YLE WH D+ +FL+++ Sbjct: 256 RAKGSFIKGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFDFLEMK 315 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KNTG D R D+ A WI DLFMKRV + W+LF P E + + YG EFE Y YE Sbjct: 316 KNTGKDENRARDLFYALWISDLFMKRVEADGMWSLFCPHECPGMAETYGAEFEALYTKYE 375 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + K + + A LW +L ETG P++ +KD N +S Q+++G + SSNLCT Sbjct: 376 SEG-----KAKKVVRAQDLWFAVLESQIETGSPYMLYKDSINEKSNQKNLGTIKSSNLCT 430 Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI ++ +E AVCNL SI N+ A +D+ KL + A L+ +IDIN + + Sbjct: 431 EIMEYTAPDEVAVCNLASIALNMFVDEATKTYDHKKLYDVVYRATLNLNRIIDINYYPVP 490 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +AK SN HR IGLG+ G + + SPEA+E+ ++ E I F A+SAS +LA + Sbjct: 491 EAKNSNMRHRPIGLGVQGLADTFFKMRYDFESPEALELNNQIFETIYFAALSASKDLAMK 550 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 GAY +++GS QG F D G+ ++ W L+K V G+RNS + Sbjct: 551 DGAYETYEGSPMSQGQFQFDMWGVTPSAKN---------WDWSALRKEVAEHGVRNSLLV 601 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ + I G ++ +P N+YV+ +SG+F VVN FLVN+L + LWD+ M +++ Sbjct: 602 APMPTASTSQILGNNECFEPITSNIYVRRVLSGEFAVVNKFLVNDLIRAGLWDDKMRNEI 661 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 ++GSI IERIP++LK ++ T +EI +I ++ R +IDQ QSLN+++ EP+ K Sbjct: 662 IANNGSIQAIERIPEELKGLYKTVWEISQKTVINMSAGRAPYIDQGQSLNIHMQEPNFGK 721 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLN 924 L ++ AW GLKT YYLR+R+A + + T+K K+N Sbjct: 722 LSSMHFYAWKAGLKTGMYYLRARAAVNAVQFTVKNDTPKVN 762 >gi|269105082|ref|ZP_06157777.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268160717|gb|EEZ39215.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 729 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 281/739 (38%), Positives = 433/739 (58%), Gaps = 39/739 (5%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 V +YDG+ ++++ L ++ +L + P+YAK+ AR ++ L++E T+ Y Sbjct: 13 VAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSLQKE--TSGYATA 70 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + E+ L Y ++ K + E M+D Y+RD+ F+Y G + Sbjct: 71 TRELS-EIGILSSAY----VDFVAKNQFALEDMID-----------YKRDYQFDYFGYKT 114 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L Y L + G +E PQ FMRVA+ +A + E+ + E Y+LLS ++ +TPTLFN Sbjct: 115 LERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLLSLCYYTHATPTLFN 171 Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G + QLSSCFL + +D + GI+ L++ A+++K +GG+G +R GA I GTNG Sbjct: 172 AGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNG 231 Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S G++P LKV N+TA V+QGG KRKG+ YLE WH D+E FLDLRKN G + R D Sbjct: 232 VSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARD 291 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + A W+PDLFM+RV +A WTLFSP L DLYG EF Y+ YER + V + Sbjct: 292 LFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYERMG----LGV-K 346 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I A L +++ ETG P++ +KD CN +S Q+++G + SSNLC EI S+ +ETA Sbjct: 347 TIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETA 406 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L N FD+DKL + A++ LD VID+N H +K +KSNH HR +GL Sbjct: 407 ACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGL 466 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G +H+P+ S EA+ + + E + ++ AS E+A+++G YSS+ GS Sbjct: 467 GIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKGTYSSYDGSPISH 526 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G F D L E +SR W +LK ++ G+RNS +A PTA+ A I G Sbjct: 527 GQFQFD---LWCE-------QPSSRWDWSQLKHQIAEHGVRNSLLIAQMPTASTAQILGN 576 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 +++ + N+Y + +SG+F ++N +LV++L+QR LW + + ++GS+ I+ IP Sbjct: 577 NEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIP 636 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDL+ ++ T +EI +I+ ++ R ++ Q+QSLNL+L P+ +++ ++ AW GLK Sbjct: 637 DDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLK 696 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLRS+ +T+ K T+ Sbjct: 697 TGMYYLRSKPSTNAVKVTV 715 >gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group] gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group] gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group] Length = 814 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 286/764 (37%), Positives = 432/764 (56%), Gaps = 57/764 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEY 295 +K+ ++ +Y + R G+ A L+ +E +M + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKDMYGHFNER---SGLNAPLVAHDVYEVIMK-NASRLDSEIIYDRDFDYDY 145 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + L Y L + G +E PQ MRV++G+ + E A++ Y+L+S F ++ Sbjct: 146 FGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHAS 202 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 203 PTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYI 262 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEE 322 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A W+PDLFM+RV N W+LF P+E L D +G EFE Y YER+ + Sbjct: 323 HRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLADCWGDEFEKLYTKYEREGKAKK 382 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 I + A LW +L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 383 I-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437 Query: 594 SEETAVCNLGSINLL--------------------AHFANNQFDYDKLASTIRTAVRVLD 633 ETAVCNL SI L + N FD+DKLA T L+ Sbjct: 438 PTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLN 497 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +IDIN + +E AK+SN HR IG+G+ G LL +P+ SPEA ++ + E I FH Sbjct: 498 KIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFH 557 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 ++ AS ELA + G Y +++GS +G+ D ++ + R W L+ + Sbjct: 558 SLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVP----------SDRWNWPSLRSTI 607 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 608 SKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +W A+ + + Y DGS+ + IPDDLK I+ T +EI L++ A R +IDQ+QSL Sbjct: 668 GVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSL 727 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+++++P+ KL ++ AW GLKT YYLR+R+A K T+ Sbjct: 728 NVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771 >gi|254457625|ref|ZP_05071053.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacterales bacterium GD 1] gi|207086417|gb|EDZ63701.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacterales bacterium GD 1] Length = 788 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 310/842 (36%), Positives = 460/842 (54%), Gaps = 125/842 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G + +++ A L +VS + + + DG++ ++++ LI Sbjct: 2 ITIIKRNGRTEPLDITKIQKYTSAAVKDLSNVSQSELEVDAQIHFRDGITSAEIQKTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V +R + L +V T Y +K Y E+ Sbjct: 62 TAVDKIDIDAPNWTFVASRLFMFNLYHQVNGFTGYGSLKK----------------YFEK 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAF 320 G K L + + D +DL L +K ERD F YLG++ LYDRY + + IE+PQ Sbjct: 106 GEKEGRLLQGLADMYDLDRLEKHIKPERDMLFNYLGVKTLYDRYLIKDRANNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA +E EK + A++FY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMAIAMFLAQREEEKHEWAIKFYDMVSQFQVMLATPTLSNARTTRHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + E AML+K+ GG+G DWT +R +G++I G + G +PFLK+ ND A+AV+Q Sbjct: 226 EGIFDSYAEMAMLSKFGGGIGWDWTGIRSMGSYIDGHKNAAGGTVPFLKITNDIAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ Y+E WHID+ +FLDL+KN+G++RRR HD+ A W+ DLFM+RV ++A WT Sbjct: 286 LGTRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPAMWLNDLFMQRVQEDAIWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P + +L LYG+EF Y+ E E V K+ A LW+K+LT FETG P+ Sbjct: 346 LFDPYDTKELATLYGEEFNKRYKELEED----ESIVKEKVKAKNLWKKILTSYFETGSPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------SSEE------- 596 + FKD N +P HVGV+ SSNLCTEI N+ S EE Sbjct: 402 LCFKDNANRANPNNHVGVIRSSNLCTEIFQNTNPNHYKIKFIFENGESISYEEDEIVKVD 461 Query: 597 ----------TAVCNLG----------------------SINLLAHFANNQFDYDKLAST 624 TA+ +LG S+NL N + D D++ Sbjct: 462 SGMEKPAKKVTALDSLGGLPIYVVEKEKINGDTAVCNLASVNL--SRVNTKEDIDRI--- 516 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + AVR LDNVID+N + IEK K++N R+IGLG+MG L I + S E + D Sbjct: 517 VPIAVRCLDNVIDLNFYPIEKVKRTNMKSRSIGLGVMGEAEMLAEQSITWGSQEHFDKID 576 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TS 742 E ME +SF+ ISAS +LA E+G Y F+GS W +GV P+D AEVR+ + S Sbjct: 577 EIMEAVSFNTISASSDLALEKGIYPDFEGSQWSKGVMPMDHAN--AEVRNLVDRGGLFAS 634 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 WD+L+ +VK GMRN MAIAPT++I+ + G +Q+I+P ++ + + N+SG VV Sbjct: 635 TYEWDDLRAKVKKQGMRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWFEENLSGLIPVV 694 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + + + + A+E++ LI++A+ Sbjct: 695 -------------------------------VPNLSPETWAYYTPAYELNQTLLIKAAAI 723 Query: 863 RQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLK 917 RQKW+DQ QSLN++ LD+ SG+ L+ IY AW +GLK+TYYLRS+S A VE +++ Sbjct: 724 RQKWLDQGQSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQSPEVANDVEDRSME 783 Query: 918 GV 919 V Sbjct: 784 CV 785 >gi|297268640|ref|XP_002799729.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Macaca mulatta] Length = 762 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 286/739 (38%), Positives = 438/739 (59%), Gaps = 40/739 (5%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +Y G++ +L+T ++ TL K P+YA + AR + L +E +K Sbjct: 15 QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66 Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301 M+ LY YI G + ++ +S +D L L + + Y+RDF++ Y G + L Sbjct: 67 VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PTLFN+ Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178 Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238 Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q +V + Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----RVRKV 353 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AV Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413 Query: 600 CNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+ Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS + Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ D + T W+ LK+ + G+RNS +A PTA+ A I G Sbjct: 534 GILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGN 583 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IP Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLK Sbjct: 644 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLR+R A + + TL Sbjct: 704 TGMYYLRTRPAANPIQFTL 722 >gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] Length = 816 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 286/763 (37%), Positives = 426/763 (55%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L + KK Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTCNHPDYASLAARIAVSNLHKNT-----KK 92 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 T +M ++ G+K+ L+ + + + + L +++ Y+RDF ++Y Sbjct: 93 SFSETIKDM------FYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G+ +E PQ MRVA+G+ + + ++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS---VIQTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+G L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYGTLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH DV EFL+LRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P+E L D +G EFE Y YER+ Sbjct: 324 RARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLADCWGAEFETLYTKYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++LT ETG P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L N FD++KLA T L+ Sbjct: 439 TETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E AK SN HR IG+G+ G A LL +P+ SPEA ++ + E I +HA Sbjct: 499 IIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA G Y ++ GS +G+ D ++ + R W L+ + Sbjct: 559 LKASTELAARLGPYETYAGSPVSKGILQPDMWNVIP----------SDRWDWAVLRDMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + L +GSI N+ IPDDLK I+ T +EI +++ A+ R +IDQ+QSLN Sbjct: 669 LWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+P+ KL ++ W GLKT YYLRSR+A K T+ Sbjct: 729 IHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTV 771 >gi|4506749|ref|NP_001024.1| ribonucleoside-diphosphate reductase large subunit [Homo sapiens] gi|132608|sp|P23921|RIR1_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit gi|323714413|pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp gi|323714414|pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp gi|323714415|pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp And Substrate Gdp gi|323714416|pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp And Substrate Gdp gi|323714417|pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Atp gi|323714418|pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Atp gi|323714419|pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Datp gi|323714420|pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Datp gi|36065|emb|CAA42118.1| M1 subunit of ribonucleotide reductase [Homo sapiens] gi|36153|emb|CAA42180.1| large subunit ribonucleotide reductase [Homo sapiens] gi|13676332|gb|AAH06498.1| Ribonucleotide reductase M1 [Homo sapiens] gi|119622988|gb|EAX02583.1| ribonucleotide reductase M1 polypeptide [Homo sapiens] gi|123991808|gb|ABM83954.1| ribonucleotide reductase M1 polypeptide [synthetic construct] gi|123999422|gb|ABM87271.1| ribonucleotide reductase M1 polypeptide [synthetic construct] Length = 792 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|296217186|ref|XP_002754895.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 1 [Callithrix jacchus] Length = 792 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 290/762 (38%), Positives = 445/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQR-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI ++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|114635715|ref|XP_001160029.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 4 [Pan troglodytes] Length = 792 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group] Length = 814 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/764 (37%), Positives = 432/764 (56%), Gaps = 57/764 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEY 295 +K+ ++ +Y + R G+ A L+ +E +M + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKDMYGHFNER---SGLNAPLVAHDVYEVIMK-NASRLDSEIIYDRDFDYDY 145 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + L Y L + G +E PQ MRV++G+ + E A++ Y+L+S F ++ Sbjct: 146 FGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHAS 202 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 203 PTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYI 262 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEE 322 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A W+PDLFM+RV N W+LF P+E L D +G EFE Y YER+ + Sbjct: 323 HRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLADCWGDEFEKLYTKYEREGKAKK 382 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 I + A LW +L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 383 I-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437 Query: 594 SEETAVCNLGSINLL--------------------AHFANNQFDYDKLASTIRTAVRVLD 633 ETAVCNL SI L + N FD+DKLA T L+ Sbjct: 438 PTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLN 497 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +IDIN + +E AK+SN HR IG+G+ G LL +P+ SPEA ++ + E I FH Sbjct: 498 KIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFH 557 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 ++ AS ELA + G Y +++GS +G+ D ++ + R W L+ + Sbjct: 558 SLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVP----------SDRWNWPSLRSTI 607 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 608 SKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +W A+ + + + DGS+ + IPDDLK I+ T +EI L++ A R +IDQ+QSL Sbjct: 668 GVWTPALKNKIIFEDGSVQKMTEIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSL 727 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+++++P+ KL ++ AW GLKT YYLR+R+A K T+ Sbjct: 728 NVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771 >gi|47497381|dbj|BAD19419.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|125584063|gb|EAZ24994.1| hypothetical protein OsJ_08774 [Oryza sativa Japonica Group] gi|186920366|gb|ACC95436.1| ribonucleotide diphosphate reductase large subunit 2 [Oryza sativa Japonica Group] Length = 810 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/763 (37%), Positives = 430/763 (56%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLGELAAETAAAMTASHPDYASLAARIAISNL--------HKT 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 K+ ++ +Y Y R G+ A L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TMKSFSETIKVMYMHYDER---SGLLAPLIADDVYEIIMKNTTRLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRV++G+ + E A++ Y+++S F ++P Sbjct: 147 GFKTLERSYLLKVVGKVVERPQHMLMRVSIGIHKDDIES---AIKTYHMMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L E A ++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLICMNDDSIEGIYDTLSECATISKCAGGIGLSIHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A WIPDLFM+RV N W+LF P+E L D +G EF+ Y+ YER+ Sbjct: 324 RARDLFYALWIPDLFMERVQNNENWSLFCPNEAPGLADCWGDEFQNLYKKYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + +SA ALW +L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVSAQALWFDILKAQIETGTPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIIEFTSP 438 Query: 595 EETAVCNLGSINLL-----------AHFA---------NNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L +H A N FD+DKLA R L+ Sbjct: 439 TETAVCNLASIGLPRFVREKGVPMESHPAKLVGSNGSKNRYFDFDKLAEITSIVTRNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + +E AK+SN HR IG+G+ G LL +P+ S EA ++ + E I +HA Sbjct: 499 IIDTNYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS E+A + G Y ++ GS +G+ D ++ + R W +L++ + Sbjct: 559 LKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP----------SDRWNWSDLREMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 KVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W + + + Y DGS+ I IPDDLK I+ T +EI +++ A R +IDQ+QSLN Sbjct: 669 IWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKTIVDMAIDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+P+ KL ++ AW GLKT YYLR+R+A K T+ Sbjct: 729 IHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771 >gi|114635717|ref|XP_001159515.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 1 [Pan troglodytes] Length = 779 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 9 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 68 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 69 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 115 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 116 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 172 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 173 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 232 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 233 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 292 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 293 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 352 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 353 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 407 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 408 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 467 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 468 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 527 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 528 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 577 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 578 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 637 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 638 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 697 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 698 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 739 >gi|332211477|ref|XP_003254845.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 1 [Nomascus leucogenys] Length = 792 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 445/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI ++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|308062005|gb|ADO03893.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Cuz20] Length = 788 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 318/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMRIEYTDGTIEFFEEKQL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVL---- 632 N + AN D K+A +TAV RV+ Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 633 ---DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 DNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|284041187|ref|YP_003391117.1| ribonucleoside-diphosphate reductase subunit alpha [Spirosoma linguale DSM 74] gi|283820480|gb|ADB42318.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirosoma linguale DSM 74] Length = 826 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 291/783 (37%), Positives = 444/783 (56%), Gaps = 41/783 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ DG S ++ +E+ C GL V V + +YDG+ ++L+ Sbjct: 3 VVKRDGRRESVKFDKITARIEKLCYGLDPAYVQPVEVAVKVVSGLYDGVKTTELDNLAAE 62 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ ++ K P+YA + AR + L +E + +K +E + G Sbjct: 63 TAASMTTKHPDYAILAARIAISNLHKETNKSFSGTIKKLYQYEDP-----------KTGE 111 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 A L+ + + D L + + Y+RD+ ++Y G + L Y L ++G E PQ Sbjct: 112 NASLISKEVYDVVRQHAALLDSTIIYDRDYGYDYFGYKTLEKSYLLKLDGRIAERPQHML 171 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ E A+E YNLLS F +TPTLFN+GT PQ+SSCFL T+ DD + Sbjct: 172 MRVAVGIHQEDIES---AIETYNLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSI 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L++ A +++ +GG+G VR G +I GTNG S G++P L+V NDTA V+Q Sbjct: 229 DGIYDTLKQTAKISQSAGGIGLSIHNVRATGTYIKGTNGTSNGIVPMLRVFNDTARYVDQ 288 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KRKG+ YLE WH D+ +FLDL+KN+G + R D+ A W PDLFMKRV + W Sbjct: 289 GGGKRKGSFAIYLEPWHADIFDFLDLKKNSGKEEGRARDLFYALWTPDLFMKRVEDDDVW 348 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +LF P E L D YG EFE Y YER+ + R I A LW K+L ETG P Sbjct: 349 SLFCPHECPGLADCYGDEFEELYTRYEREG-----RARRTIKAQELWFKILESQTETGTP 403 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----- 614 ++ +KD N +S Q+++G + SSNLCTEI ++ +E AVCNL SI L Sbjct: 404 YMLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEIAVCNLASIALPKFITRGTDGIM 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +FD+ KL +TA R L+ +IDIN + +E+A++SN HR IGLG+ G A +L +P+ Sbjct: 464 RFDHQKLYEVTKTATRNLNKIIDINYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPF 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + ++ E I F A+++S+E A+E G Y ++KGS QG+F D G+ Sbjct: 524 ESEEARRLNEDIFETIYFGAMTSSMEQAKEFGPYETWKGSPISQGIFQFDMWGVKP---- 579 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 +++R W+ L+K V G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 580 -----KSNRWDWESLRKDVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN L+ +L + LW++AM ++L +GSI I IP ++K ++ T +EI Sbjct: 635 LSGEFVVVNKHLLKDLVKLGLWNDAMKNNLILANGSIQAIPNIPQNIKDLYKTVWEIKQK 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I+ A+ R +I Q+QSLN+++ + + KL ++ AW GLKT YYLR+++A K Sbjct: 695 HIIDMAADRGAYICQSQSLNIHIQDSNFGKLTSMHFYAWKAGLKTGMYYLRTKAAADAVK 754 Query: 914 STL 916 T+ Sbjct: 755 FTV 757 >gi|261838086|gb|ACX97852.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter pylori 51] Length = 788 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 318/829 (38%), Positives = 452/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVL---- 632 N + AN D K+A +TAV RV+ Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521 Query: 633 ---DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 DNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|311263375|ref|XP_003129662.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 2 [Sus scrofa] Length = 793 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 40/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ L+ YI G + ++ S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVARSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L I+G E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE+ +G ++ + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYERYEKNR-KGHVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 422 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 423 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 482 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 483 IDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 542 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 543 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 592 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 593 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 652 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 653 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 712 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 713 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 754 >gi|4151068|emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum] Length = 808 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 296/802 (36%), Positives = 442/802 (55%), Gaps = 61/802 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ L P+YA + AR + L +K Sbjct: 38 LVSQKVCAGVYKGVTTSQLDELAAETAAALTANHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDF---DLVYLANDLKYERDFAFE 294 +K+ ++ +Y +I E G+KA L+ + + + + L +++ Y+RDF ++ Sbjct: 90 TKKSFSETVKDMY-----NHISERSGLKAPLISDEVYEIIMKNAARLDSEIIYDRDFDYD 144 Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 Y G + L Y L ING+ +E PQ MRV++G+ + E A++ Y+L+S F + Sbjct: 145 YFGFKTLERSYLLKINGNVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHA 201 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +PTLFN+GT PQLSSCFL + +D + GI+ L+E A+++K +GG+G +RG G++ Sbjct: 202 SPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAVISKSAGGIGVSVHNIRGTGSY 261 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I GTNG S G+IP L+V NDTA V+QGG KRKGA YLE WH D+ EFLD+RKN G + Sbjct: 262 IRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDMRKNHGKE 321 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R D+ A W+PDLFM+RV N W+LF P E L D +G++FE Y YER+ Sbjct: 322 EHRARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLADCWGEDFEKLYTKYEREG--- 378 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 K + + A LW ++L ETG P++ +KD CN +S QQ++G + SSNLCTEI + Sbjct: 379 --KAKKVVQAQNLWFEILKSQIETGTPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIIEYT 436 Query: 593 SSEETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVL 632 S ETAVCNL SI L + N FD+ KLA L Sbjct: 437 SPTETAVCNLASIALPRYVREKEVPDESQPSKLVGSRGSKNRYFDFAKLAEVTALVTTNL 496 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + +E AK+SN HR IGLG+ G LL + + SPEA ++ + E I + Sbjct: 497 NKIIDVNYYPVETAKRSNLRHRPIGLGVQGLADTFILLGMSFDSPEAQQLNKDIFETIYY 556 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 HA+ AS ELA + G Y ++ GS +G+ D G+ + R W L+ Sbjct: 557 HALKASSELAAKEGPYETYAGSPVSKGILQPDMWGVTP----------SDRWDWGVLRGM 606 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 607 IAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTE 666 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW + + + Y DGS+ I IP DLK I+ T +EI L++ A R +IDQ+QS Sbjct: 667 MGLWSPTLKNRIIYDDGSVQKIPEIPQDLKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQS 726 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 LN+++D+P+ KL ++ AW GLKT YYLRSR+A K T+ L P T Sbjct: 727 LNIHMDQPNFGKLTSLHFHAWSRGLKTGMYYLRSRAAADAIKFTVD--TSMLKEKPQTAV 784 Query: 932 NSSTHSLGIPSSCTSDTECEVC 953 + T + S ++ EC C Sbjct: 785 DDDTKMAQMVCSLSNRDECMAC 806 >gi|156083304|ref|XP_001609136.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis T2Bo] gi|154796386|gb|EDO05568.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis] Length = 838 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 296/757 (39%), Positives = 426/757 (56%), Gaps = 53/757 (7%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR----- 230 V + V MY G+ S L+ + + P+Y+K+ AR +++ L + Sbjct: 60 VDAPRVTQSVINGMYSGIRTSQLDELAAQTCAYMAATHPDYSKLAARIVVDNLHKNTLDN 119 Query: 231 --EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDL 285 +V+T ++K +YI + A L+ E + DF ++ + ++ Sbjct: 120 YADVITALFKY------------------KYIYDS-NASLISEEVYDFIMANIDRINAEI 160 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y RDF ++Y GL+ L Y L IN +E PQ MRV+ G+ + E R ++ Y+L Sbjct: 161 DYSRDFQYDYFGLKTLERSYLLRINDKIVERPQHMLMRVSAGIHTGDIE---RTIQTYHL 217 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404 +S +F +TPTLF SGT PQ+SSCFL + DD L GIF L + A ++K +GG+G Sbjct: 218 MSQKYFTHATPTLFFSGTPRPQMSSCFLLDMKDDSLAGIFETLTQCAFISKCAGGIGLAC 277 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463 +R GA+I GTNGKS G++P L++ N TA V+QGG KRKG+ YLE WH D+ +FL Sbjct: 278 HKIRASGAYIRGTNGKSNGLVPMLRIFNSTARYVDQGGGKRKGSFAIYLEPWHADIMDFL 337 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 DLRKN G + R D+ A WIPDLFMKRV N WTL PDE L+D++G EFE Y Sbjct: 338 DLRKNHGAEEARARDLFYALWIPDLFMKRVESNGDWTLMCPDECRGLYDVWGDEFEALYT 397 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE + + RK I A LW +L ETG+P++ +KD CN +S QQ++G + SS Sbjct: 398 KYEMEG------LGRKTIPAQTLWFAILQSQIETGNPFMLYKDACNAKSNQQNLGTIKSS 451 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINC 640 NLC EI +S EE AVCNL SI L + N +D+ KL R L+ VID N Sbjct: 452 NLCCEIVQYTSPEEVAVCNLASIALPMYVDKENKTYDFKKLYDVARVITYNLNKVIDRNY 511 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + +AK SNH HR IG+G+ G L+ P+ S EA E+ E I + + S+ Sbjct: 512 YPVPEAKVSNHRHRPIGVGVQGLADTFMLMRYPFESEEAKELNRRIFETIYYGCLDESIS 571 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA++ G Y S+ GS QG D G A V ++L WD LK+R+ G+RN Sbjct: 572 LAEKYGTYESYPGSPASQGKLQFDLWG--ATVDNKL-------WDWDGLKQRMAKHGLRN 622 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +A PTA+ + I G ++S +P N+Y + +SG+F VVN L+ +L LWD+AM Sbjct: 623 SLFLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLRDLVDLGLWDDAM 682 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 L ++GS+ +IE IP +K ++ T +EI +I+ A+ R +IDQ+QSLN+YLD+P Sbjct: 683 KEKLIAYNGSLRHIEGIPQHIKDLYKTVWEIKQKSIIDMAADRGIFIDQSQSLNIYLDQP 742 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + KL ++ W GLKT TYYLR+++AT K T+ Sbjct: 743 TFGKLTSMHFYGWKKGLKTGTYYLRTQAATDAIKFTV 779 >gi|225012155|ref|ZP_03702592.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-2A] gi|225003710|gb|EEG41683.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-2A] Length = 814 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 287/738 (38%), Positives = 433/738 (58%), Gaps = 36/738 (4%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +YDG++ S+L+ + T+ P+YAK+ AR + L +K +K+ Sbjct: 44 EGLYDGVTTSELDNLAAEIAATMTTTHPDYAKLAARISVSNL--------HKNTKKSFSE 95 Query: 247 EMQCLYPEYFCRYI--EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQIL 301 M LY +Y+ G KA LL + + D + L + + Y RDF +++ G + L Sbjct: 96 TMTDLY-----KYVNPRTGKKAPLLSDEVHDIIQKNADKLDSSIIYNRDFGYDFFGFKTL 150 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L +NG +E PQ MRV++G+ L++ E A+E Y L+S +F +TPTLFNS Sbjct: 151 ERSYLLKLNGVIVERPQHMLMRVSIGIHLEDIEA---ALETYELMSKRYFTHATPTLFNS 207 Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT PQ+SSCFL T+ DD + GI+ L++ A +++ +GG+G VR G++I GTNG Sbjct: 208 GTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGT 267 Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S G++P L+V NDTA V+QGG KRKG+ Y+E WH D+ +FL+L+KN G + R D+ Sbjct: 268 SNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYVEPWHADIFDFLELKKNHGKEEMRARDL 327 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A W PDLFMKRV +NA WTL P+E DL++++G EF+ Y YE + RG R Sbjct: 328 FYAMWTPDLFMKRVEENADWTLMCPNECPDLYNVHGDEFDAMYLKYESEG-RGR----RT 382 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LW K+L ETG P++ +KD N +S Q+++G + SSNLCTEI ++ +E AV Sbjct: 383 IKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAV 442 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL SI L + FD+ L + L+ VID N + + +A+ SN HR +GLG Sbjct: 443 CNLASIALPMFVKDGAFDHQALYDVTVRVTKNLNRVIDRNYYPVIEAQNSNFRHRPVGLG 502 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G A +L +P+ S EA ++ E E + F A++AS E A+ G Y ++KGS G Sbjct: 503 VQGLADAFIMLRLPFTSDEAKKLNQEIFETLYFAAVTASSEEAKREGPYETYKGSPIANG 562 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 F + G ++DE + R W L+K VK G+RNS +A PTA+ + I G + Sbjct: 563 EFQHNLWG----IKDE---ELSGRWDWAALRKTVKKQGVRNSLLVAPMPTASTSQILGNN 615 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + +P N+Y + +SG+F VVN L+ +L R LW+E M +L ++GS+ +IE IP+ Sbjct: 616 ECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVDRGLWNEDMKQELMRNNGSVQSIEGIPE 675 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK+++ T +E+ +I+ + +R +IDQ+QSLNL+++ + KL ++ W GLKT Sbjct: 676 DLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSLNLFMEGATMAKLTSMHFYGWKSGLKT 735 Query: 900 -TYYLRSRSATSVEKSTL 916 YYLR++SA K TL Sbjct: 736 GMYYLRTKSAVDAIKFTL 753 >gi|324506544|gb|ADY42792.1| Ribonucleoside-diphosphate reductase large subunit [Ascaris suum] Length = 790 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 295/815 (36%), Positives = 446/815 (54%), Gaps = 67/815 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSE 195 P ++ DG + ++ +E+ C GL +VS K++ ++ G+S Sbjct: 9 PSTYVVKRDGRREGVHFDKIAHRIEKLCYGLNPDYVDYIEVSQKVI-----AGLFKGVST 63 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR-------EVLTTVYKKPQKATHHEM 248 L+ ++ + K P+YA + AR + L + EV T +Y HH Sbjct: 64 VQLDNLAAETAADMTTKHPDYAILAARIAISNLHKQTKKMFSEVATVLYN-----AHHP- 117 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRY 305 + GV ++ + + D + L + + ++RDF+F Y G + L Y Sbjct: 118 ------------KTGVHTPMISKEVFDIIIANADRLNSAIVHDRDFSFTYFGFKTLERSY 165 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L +NG +E PQ FMRVA+G+ ++ + A+E YNL+S F +TPTLFNSGTR Sbjct: 166 LLKMNGEPVERPQHLFMRVAVGIHKEDIDA---AIETYNLMSERWFTHATPTLFNSGTRL 222 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL T+ +D + GIF L++ A+++K +GG+G + +R G+ I GT+G S G+ Sbjct: 223 PQMSSCFLLTMQEDSIEGIFDTLKKCALISKSAGGIGLNVHCIRATGSSIAGTSGVSNGL 282 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V N+TA V+QGG KR GA YLE WH D+ E+LDLRKN GD+ R D+ Sbjct: 283 VPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFEYLDLRKNVGDELERCRDLFFGL 342 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFM+RV N W+L P E L D +G EFE Y YE E + ++I A Sbjct: 343 WVPDLFMQRVRDNGKWSLMCPAECRGLEDCWGDEFEKLYSKYE-----AEGRYRKQIEAR 397 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW ++T ETG P++ +KD CN +S QQ+VG + SNLCTEI SS E AVCNL Sbjct: 398 RLWEAIITAQIETGVPYMVYKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPTEVAVCNLA 457 Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 SI L + FD+ KL + R L+ +ID N + + +AK SN HR IG+G+ G Sbjct: 458 SIALNRFVTTEKTFDFKKLHEVTKVVTRNLNKIIDGNYYPVPEAKVSNMRHRPIGIGVQG 517 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 A L+ P+ S A E+ E I A+ AS ELA++ G Y S++GS +G+ Sbjct: 518 LADAFMLMRYPFTSAPARELNKRIFETIYHAALEASCELAKKYGPYESYEGSPISKGILQ 577 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D G+ T + WD L+ + G+RNS +A PTA+ A I G ++SI Sbjct: 578 QDMWGV----------EPTDQCDWDTLRAEIAKYGVRNSLLLAPMPTASTAQILGNNESI 627 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y ++ +SG+F + N L+ +L LWD+ M ++ H GS+ IERIP +++ Sbjct: 628 EPYTSNVYTRNVLSGNFQIFNPHLLKDLVDLGLWDDEMKLEIIAHKGSVQAIERIPLEIR 687 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 ++ T +E+ +I+ A+ R +IDQ+QSLN+++ +PS ++ W GLKT Y Sbjct: 688 NLYKTVWELSQKDIIDMAADRGAFIDQSQSLNIFIAKPSYANCTSMHFYGWSKGLKTGMY 747 Query: 902 YLRSRSAT-----SVEKSTLKGVDGKLNAVPVTDP 931 YLR+R A +V+K+ LK V+ K+ ++DP Sbjct: 748 YLRTRPAVDAVQFTVDKTRLKEVNAKMLECALSDP 782 >gi|194388656|dbj|BAG60296.1| unnamed protein product [Homo sapiens] Length = 762 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +Y G++ +L+T ++ TL K P+YA + AR + L +E +K Sbjct: 15 QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66 Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301 M+ LY YI G + ++ +S +D L L + + Y+RDF++ Y G + L Sbjct: 67 VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PTLFN+ Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178 Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238 Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 353 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AV Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413 Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+ Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS + Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ D + T W LK+++ G+RNS +A PTA+ A I G Sbjct: 534 GILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IP Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLK Sbjct: 644 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLR+R A + + TL Sbjct: 704 TGMYYLRTRPAANPIQFTL 722 >gi|297821381|ref|XP_002878573.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis lyrata subsp. lyrata] gi|297324412|gb|EFH54832.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis lyrata subsp. lyrata] Length = 817 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 286/765 (37%), Positives = 430/765 (56%), Gaps = 58/765 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTCNHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ ++ R G+K+ L+ + + D + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKDMFNHVNDR---SGLKSPLIADDVFDIIMQNAARLDSEIIYDRDFEYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G+ +E PQ MRVA+G+ + + A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS---AIQTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG--KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S G++P L+V NDTA V+QGG +++GA YLE WH DV EFL+LRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKEGAFAVYLEPWHADVFEFLELRKNHGKEE 323 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A W+PDLFM+RV N W+LF P+E L D +G EFE Y YER+ Sbjct: 324 HRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGAEFETLYTKYEREG---- 379 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 K + + A LW ++LT ETG P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 380 -KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTS 438 Query: 594 SEETAVCNLGSINLLAHFA---------------------NNQFDYDKLASTIRTAVRVL 632 ETAVCNL SI L F N FD+DKLA T L Sbjct: 439 PTETAVCNLASI-ALPRFVREKGVPLDSHPSKLAGSLGSKNRYFDFDKLAEVTATVTLNL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + +E AK SN HR IG+G+ G A LL +P+ SPEA ++ + E I + Sbjct: 498 NKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYY 557 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 HA+ AS ELA G Y ++ GS +G+ D ++ ++R W L+ Sbjct: 558 HALKASSELAARVGPYETYSGSPVSKGILQPDMWNVIP----------SNRWDWAVLRDM 607 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L Sbjct: 608 ISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTD 667 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW + + L +GSI N+ IPDDLK I+ T +EI +++ A R +IDQ+QS Sbjct: 668 MGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAVDRGCYIDQSQS 727 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++D+P+ KL ++ AW GLKT YYLRSR+A K T+ Sbjct: 728 LNIHMDKPNFAKLTSLHFYAWTKGLKTGMYYLRSRAAADAIKFTV 772 >gi|163801386|ref|ZP_02195285.1| hypothetical protein 1103602000598_AND4_10974 [Vibrio sp. AND4] gi|159174875|gb|EDP59675.1| hypothetical protein AND4_10974 [Vibrio sp. AND4] Length = 752 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 436/761 (57%), Gaps = 44/761 (5%) Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 ++R EM+ + GL+ V V +YDG+ ++++ L ++ +L + P+YAK Sbjct: 19 TRRAEMLAD----GLK-VEPIAVAQRVVSGLYDGIKATEIDVFLAETAASLATEHPDYAK 73 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR ++ L++E + + + Y + R +L E M+D Sbjct: 74 LAARVMVSSLQKETNGYAAATSELSEIGILSDAYVNFVAR-------NQLALEDMID--- 123 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 Y+RD+ F+Y G + L Y L + G+ +E PQ FMRVA+ +A + E+ + Sbjct: 124 --------YKRDYQFDYFGYKTLERSYLLKVKGAVVERPQDMFMRVAVVVAGDDLEEIR- 174 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 E Y+LLS ++ +TPTLFN+G + QLSSCFL + +D + GI+ L++ A+++K + Sbjct: 175 --ELYDLLSLGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSIDGIYDTLKDCALISKSA 232 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G +R GA I GTNG S G+IP LKV N+TA V+QGG KRKG+ YLE WH Sbjct: 233 GGIGLHIHNIRATGAPIIGTNGVSNGIIPMLKVFNETARYVDQGGGKRKGSFAVYLEPWH 292 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+E FLDLRKN G + R D+ A W+PDLFM+RV +A WTLFSP DL +LYG Sbjct: 293 ADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMQRVENDAEWTLFSPHNTKDLSELYGS 352 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF Y+ YER + I A L K++ ETG P++ +KD CN +S Q+++ Sbjct: 353 EFNRKYQEYERIG-----LGVKTIKARQLMTKIIESQTETGTPYMLYKDACNEKSNQKNL 407 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SSNLC EI S+ +ETA CNL S+ L + FD++KL + A++ LD VI Sbjct: 408 GTIKSSNLCAEIMEVSTPDETAACNLASVALPKFVTDTGFDFEKLHQVTKVAIKNLDRVI 467 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N H K +KSNH HR +GLG+ G +H+P+ S EA+ + + E + ++ Sbjct: 468 DVNYHPTNKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSKEALHLNRDIAETMYHASLE 527 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS E+A+++G YSS+ GS QG+F D G +SR W +LK ++ Sbjct: 528 ASCEIAKQKGTYSSYDGSPISQGLFQFDLWG----------KQPSSRWDWSQLKLKIAEH 577 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G +++ + NLY + +SG+F ++N LV +L++ LW Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNLYKRQTLSGEFIILNKHLVRDLEKNGLW 637 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + ++GS+ I+ IPDDL+ ++ T +EI +I+ ++ R ++ Q+QSLNL+ Sbjct: 638 TSKIRDAILLNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAERAPFVCQSQSLNLW 697 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 L P+ +++ ++ AW GLKT YYLRS+ + + K T+ Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSANAVKVTV 738 >gi|114635719|ref|XP_001159937.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 3 [Pan troglodytes] Length = 752 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +Y G++ +L+T ++ TL K P+YA + AR + L +E +K Sbjct: 5 QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 56 Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301 M+ LY YI G + ++ +S +D L L + + Y+RDF++ Y G + L Sbjct: 57 VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 111 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PTLFN+ Sbjct: 112 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 168 Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG Sbjct: 169 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 228 Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ Sbjct: 229 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 288 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + Sbjct: 289 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 343 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AV Sbjct: 344 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 403 Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+ Sbjct: 404 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 463 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS + Sbjct: 464 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 523 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ D + T W LK+++ G+RNS +A PTA+ A I G Sbjct: 524 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 573 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IP Sbjct: 574 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 633 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLK Sbjct: 634 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 693 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLR+R A + + TL Sbjct: 694 TGMYYLRTRPAANPIQFTL 712 >gi|332835621|ref|XP_003312921.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Pan troglodytes] Length = 762 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +Y G++ +L+T ++ TL K P+YA + AR + L +E +K Sbjct: 15 QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66 Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301 M+ LY YI G + ++ +S +D L L + + Y+RDF++ Y G + L Sbjct: 67 VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PTLFN+ Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178 Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238 Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 353 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AV Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413 Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+ Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS + Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ D + T W LK+++ G+RNS +A PTA+ A I G Sbjct: 534 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IP Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLK Sbjct: 644 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLR+R A + + TL Sbjct: 704 TGMYYLRTRPAANPIQFTL 722 >gi|197100140|ref|NP_001126012.1| ribonucleoside-diphosphate reductase large subunit [Pongo abelii] gi|75041664|sp|Q5R919|RIR1_PONAB RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit gi|55730032|emb|CAH91741.1| hypothetical protein [Pongo abelii] Length = 792 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 288/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKEA--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + S+LCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|47225021|emb|CAF97436.1| unnamed protein product [Tetraodon nigroviridis] Length = 846 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/738 (38%), Positives = 427/738 (57%), Gaps = 41/738 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T S TL K P+YA + AR Sbjct: 22 IQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLAAEISATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L +E +K M+ LY Y+ + S D+V Sbjct: 82 AVSNLHKET--------KKVFSEVMEDLY-----NYVNPLNRCHSPMVSKETLDIVLQNR 128 Query: 284 D-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 D + Y+RDF++ + G + L Y L ING E PQ MRV++G+ + + Sbjct: 129 DRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHQNDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGHSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+L PDE L++ +G+ Sbjct: 306 FDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWSLMCPDECPGLNECWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE++ +V R + A +W ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYTSYEKEG-----RVKRVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNV 635 G + SSNLCTEI +SS+E AVCNL SI L + FD+ KLA+ + VR L+ + Sbjct: 421 GTIKSSNLCTEIVEYTSSDEVAVCNLASIALNMYVTPECTFDFHKLAAVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A++SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ Sbjct: 481 IDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRYPFESPEAQLLNTQIFETIYYAAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA E G Y S++GS +GV D G T W +LK+R+ Sbjct: 541 EASCQLAAELGPYESYEGSPVSKGVLQYDMWG----------KTPTELWDWQQLKERIAR 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+ N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 HGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + L H+GS+ NI+ IP+D+K+++ T +EI +I+ A+ R +IDQ+QS+N+ Sbjct: 651 WNEDMKNQLIAHNGSVQNIDGIPNDVKQLYKTVWEISQKTVIKMAADRGAFIDQSQSMNI 710 Query: 876 YLDEPSGKKLDFIYRQAW 893 ++ EP+ KL ++ W Sbjct: 711 HIAEPNYGKLTSMHFYGW 728 >gi|296217188|ref|XP_002754896.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 2 [Callithrix jacchus] Length = 762 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 286/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +Y G++ +L+T ++ TL K P+YA + AR + L +E +K Sbjct: 15 QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66 Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301 M+ LY YI G + ++ +S +D L L + + Y+RDF++ Y G + L Sbjct: 67 VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PTLFN+ Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178 Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238 Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q +V + Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR-----RVRKV 353 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AV Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413 Query: 600 CNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+ Sbjct: 414 CNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A L+ P+ S EA + + E I + A+ AS +LA+E G Y +++GS + Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSR 533 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ D + T W LK+++ G+RNS +A PTA+ A I G Sbjct: 534 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IP Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDLK+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLK Sbjct: 644 DDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLR+R A + + TL Sbjct: 704 TGMYYLRTRPAANPIQFTL 722 >gi|332211479|ref|XP_003254846.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 2 [Nomascus leucogenys] Length = 762 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/739 (38%), Positives = 435/739 (58%), Gaps = 40/739 (5%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +Y G++ +L+T ++ TL K P+YA + AR + L +E +K Sbjct: 15 QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66 Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301 M+ LY YI G + ++ +S +D L L + + Y+RDF++ Y G + L Sbjct: 67 VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PTLFN+ Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178 Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238 Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 353 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AV Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413 Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+ Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS + Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ D + T W LK+++ G+RNS +A PTA+ A I G Sbjct: 534 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IP Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDLK+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLK Sbjct: 644 DDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLR+R A + + TL Sbjct: 704 TGMYYLRTRPAANPIQFTL 722 >gi|268573646|ref|XP_002641800.1| C. briggsae CBR-RNR-1 protein [Caenorhabditis briggsae] gi|187031585|emb|CAP29649.1| CBR-RNR-1 protein [Caenorhabditis briggsae AF16] Length = 790 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 281/735 (38%), Positives = 430/735 (58%), Gaps = 36/735 (4%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ ++ ++ + P YA + AR + L +KK K M Sbjct: 53 LYKGVTTVELDNLAAETAASMTTQHPEYALLAARIAVSNL--------HKKTNKVFSEVM 104 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305 + L+ E+ + G A ++ + + + L + + Y+RD+++ Y G + L Y Sbjct: 105 KTLH-EF--HHPHTGKHAPMISDETWEIIQKNADKLNSAIVYDRDYSYTYFGFKTLERSY 161 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN +E PQ MRVA+G+ K+ A+E YNL+S + ++PTLFNSGT Sbjct: 162 LLKINKEVVERPQQMLMRVAIGIHGKDISA---AIETYNLMSERYMTHASPTLFNSGTCR 218 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL T+ +D + GI+ L++ A+++K +GG+G + +R G+ I GTNG S G+ Sbjct: 219 PQMSSCFLLTMSEDSILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGL 278 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 IP L+V N+TA V+QGG KR GA YLE WH D+ EF+ LRKNTG + R D+ A Sbjct: 279 IPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFEFVALRKNTGPEEERARDLFLAL 338 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFMKRV ++ W+L P E L D +G+EFE Y YE E +V + + A Sbjct: 339 WVPDLFMKRVEKDQDWSLMCPCECPGLDDCWGEEFETLYAKYE-----AEGRVRKTVKAR 393 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +++ ETG P+IT+KD N +S QQ++G + SNLCTEI S+ +E AVCNL Sbjct: 394 KLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEVAVCNLA 453 Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 SI L N++ FD+ KLA + + L+ +ID+N + IE+A+ SN HR IGLG+ G Sbjct: 454 SIALNRFVTNDKKFDFVKLAEVTKVITKNLNKIIDVNYYPIEEARNSNMRHRPIGLGVQG 513 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L+ P+ SP+A ++ E I + A+ AS ELA+ G YS+++GS +G Sbjct: 514 LADCFMLMRYPFTSPQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQ 573 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D G+ T++ WDEL+K++ G+RNS MA PTA+ A I G ++SI Sbjct: 574 FDMWGVTP----------TNQCNWDELRKKIAKHGVRNSLLMAPMPTASTAQILGNNESI 623 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y + +SGDF +VN ++ +L +R LW + M + L ++GSI NI IPDD+K Sbjct: 624 EPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPGIPDDIK 683 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 +++ T +EI +IE A+ R +IDQ+QSLN+++ +PS + ++ W GLKT Y Sbjct: 684 ELYLTVWEISQKEIIEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKKGLKTGMY 743 Query: 902 YLRSRSATSVEKSTL 916 YLR++ A + + T+ Sbjct: 744 YLRTKPAVNAVQFTV 758 >gi|305665629|ref|YP_003861916.1| putative ribonucleoside-diphosphate reductase large chain [Maribacter sp. HTCC2170] gi|88710385|gb|EAR02617.1| probable ribonucleoside-diphosphate reductase large chain [Maribacter sp. HTCC2170] Length = 825 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 300/797 (37%), Positives = 450/797 (56%), Gaps = 35/797 (4%) Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEK 212 LI F+ ++ V + C GL + + V + +YDG++ S+L+ + T+ Sbjct: 12 LIMFD--KITARVRKLCYGLNGLVDPLKVAMRVIEGLYDGVTTSELDNLAAEIAATMTTT 69 Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 P+YAK+ AR + L +K +K+ M+ LY R G KA LL + Sbjct: 70 HPDYAKLAARISVSNL--------HKNTKKSFSETMEDLYTYVNPR---TGKKAPLLSDE 118 Query: 273 MMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + + V L + + Y RDF ++Y G + L Y L +NG E PQ MRV++G+ Sbjct: 119 VYKVIAENSVALDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIH 178 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQ 388 L + + K E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + GI+ L+ Sbjct: 179 LDDLDAVK---ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLK 235 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGA 447 + A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Sbjct: 236 QTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGGGKRKGS 295 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 Y+E WH D+ EFL+L+KN G + R D+ A WI DLFMKRV N WTL P+E Sbjct: 296 FAIYMEPWHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEEWTLMCPNEC 355 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L + +EFE Y YE E K + + A LW K+L ETG P++ +KD Sbjct: 356 PGLFTNHSEEFEKLYLKYE-----SENKGRKTVRARELWEKILESQIETGTPYMLYKDAA 410 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N +FD+ +L + Sbjct: 411 NRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKELFRVTKR 470 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 + L+ VID N + +++A+ SN HR IGLG+ G A LL +P+ S EA ++ E Sbjct: 471 VTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFILLRLPFTSDEAKKLNQEIF 530 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E + F A++AS+E A+E G YSS+ GS QG F + G ++DE + R W Sbjct: 531 ETLYFAAVTASMEAAKEEGKYSSYDGSPISQGEFQHNLWG----IKDE---ELSGRWDWT 583 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L+K VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ Sbjct: 584 KLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLL 643 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +L +W+E M +L +GSI +IE IP D++ ++ T +E+ +I+ + R +I Sbjct: 644 EDLVNLGMWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSRHRGYFI 703 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAV 926 DQ+QSLNL+++ + KL ++ AW GLKT YYLR+++A K TL K V Sbjct: 704 DQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNSKKKEEPV 763 Query: 927 PVTDPNSSTHSLGIPSS 943 P ++T + G+ ++ Sbjct: 764 EAEVPLAATPAPGVANA 780 >gi|307103606|gb|EFN51865.1| hypothetical protein CHLNCDRAFT_32953 [Chlorella variabilis] Length = 810 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/762 (37%), Positives = 437/762 (57%), Gaps = 55/762 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S+L+ ++ +L P+YA + AR + L + L + + Sbjct: 38 LVAQKVTTGVYKGVTTSELDELAAETAASLTATHPDYALLAARIAVSNLHKNTLKSFSET 97 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYL 296 + H + P+ G KA L+ E + + + + L +++ Y+RDF ++Y Sbjct: 98 VKLMFSH----VNPK-------NGEKAPLIDEKVYEIIMEHAERLDSEIVYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L +NG +E PQ MRVA+G+ L++ + AVE Y+LLS F ++P Sbjct: 147 GFKTLERSYMLRVNGRVVERPQHMLMRVAVGIHLEDVDA---AVETYHLLSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + +D + GI+ L+E A ++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKNDSIEGIYDTLKECASISKSAGGIGLSMHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA Y E WH D+ ++LDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAMYCEPWHADIFDWLDLRKNHGKEEA 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A WIPDLFM RV N W+LF P+E L D +G+EFE Y YER+ Sbjct: 324 RARDLFYALWIPDLFMHRVEANGEWSLFCPNESPGLADCWGEEFEALYSRYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + + I A LW +L ETG+P++ +KD N +S QQ++G + SSNLCTEI SS Sbjct: 379 RARKVIKAQQLWFAILEAQVETGNPFMLYKDSANRKSNQQNLGTIKSSNLCTEIIEYSSP 438 Query: 595 EETAVCNLGSINLLAHFANNQ-------------------FDYDKLASTIRTAVRVLDNV 635 EETAVCNL S+ L + FD+DKLA A R L+ + Sbjct: 439 EETAVCNLASVALPRFVREKEPSGREGKKLVGSLDAEGRYFDFDKLAEVTAVATRNLNKI 498 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID+N + +E A++SN HR IGLG+ G LL +P+ SPEA E+ + E I F A+ Sbjct: 499 IDVNYYPVETARRSNMRHRPIGLGVQGLADTFLLLGLPFDSPEAAELNRQIFETIYFAAL 558 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 S++L++ G YS+++GS +G+ D G+ + R WD L++ + Sbjct: 559 RTSMQLSKAEGPYSTYEGSPVSKGILQPDMWGV----------KPSDRWDWDGLRRDIAQ 608 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ + I G ++ +P N+YV+ +SG+F VVN L+++L + L Sbjct: 609 NGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFVVVNQHLLHDLTRLGL 668 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 WD + +++ GS+ +++ IP++LK+++ T +EI L++ A+ R +IDQ+QS N+ Sbjct: 669 WDTDVKNEIVAASGSVADLD-IPNNLKELYKTVWEIKQRVLVDMAADRGAFIDQSQSFNV 727 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ +P+ KL ++ AW GLKT YYLRSR+A K T+ Sbjct: 728 HMSDPNFGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTV 769 >gi|225683656|gb|EEH21940.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb03] Length = 797 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/803 (36%), Positives = 446/803 (55%), Gaps = 44/803 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ KK + ++ Y + G A ++ +S + + + Sbjct: 82 AVSNLHKQT-----KKQFSSVIDDL------YHYHNPKNGRPAPMISQSTYEIVMRHADE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + E R + Sbjct: 131 FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAIGIHGDDVE---RVI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K +GG Sbjct: 188 ETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH+D Sbjct: 248 IGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHMD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG EF Sbjct: 308 IFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE YE++ RG+ + I A LW +L ETG+P++ +KD CN +S Q+++G Sbjct: 368 EALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SSNLCTEI S +E AVCNL SI L ++D+ KL + VR L+ +I Sbjct: 423 IRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVRNLNRII 482 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D N + +E+AK+SN HR I G+ G A L +P+ SPEA ++ + E I ++ Sbjct: 483 DRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHACLT 542 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA+ G YSS++GS QG+ D G+ T WD LK+ + Sbjct: 543 ASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----------TDLWDWDSLKQEIAKH 592 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L LW Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN++ Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAVPVTD 930 L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D + V Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNVARVNGAM 772 Query: 931 PNSSTHSLGIPSSCTSDTECEVC 953 + S SS + C +C Sbjct: 773 KKRAAVSASYTSSIENPESCLMC 795 >gi|312889902|ref|ZP_07749446.1| ribonucleoside-diphosphate reductase, alpha subunit [Mucilaginibacter paludis DSM 18603] gi|311297434|gb|EFQ74559.1| ribonucleoside-diphosphate reductase, alpha subunit [Mucilaginibacter paludis DSM 18603] Length = 792 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 300/824 (36%), Positives = 456/824 (55%), Gaps = 53/824 (6%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG + ++ +E+ C GL DVS K+V + +YDG++ S+L+ Sbjct: 3 VIKRDGKKETVKFDKITARIEKLCYGLNPSLVDPIDVSKKVV-----EGLYDGVTTSELD 57 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ +L K P+YA + +R + L + + K+ M+ LY Y Sbjct: 58 NLAAETAASLTTKHPDYALLASRIAVSNLHKNTI--------KSFSETMRNLY-----LY 104 Query: 260 IEE--GVKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 ++ G A L+ + + ++ + L + + Y+RDF F+Y G + L Y L I+G Sbjct: 105 TDKKTGKNASLIADDVWQAIEANAELLDSTIIYDRDFGFDYFGFKTLEKSYLLKIDGKIA 164 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FMRV++G+ E ++ YNL+S F +TPTLFN+GT PQ+SSCFL Sbjct: 165 ERPQHLFMRVSVGI---HKEDIDSVIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLL 221 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ DD + GI+ L++ A +++ +GG+G VR G++I GTNG S G+IP LKV ND Sbjct: 222 TMQDDSIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIIPMLKVFND 281 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKGA YLE WH D+ EFLDLRKN G + R D+ A WI DLFM+R Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWICDLFMQR 341 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ W+LF P E LH+ +GKEFE Y YE E + + I A LW +L Sbjct: 342 VEEDGQWSLFCPHEAPGLHECWGKEFEALYTKYE-----AEGRARKTIRAQELWFAILDA 396 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD N +S QQ++G + SSNLCTEI +S++E AVCNL S+ L + Sbjct: 397 QVETGTPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYIT 456 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 FD+ KL L+ +ID N + + +A SN HR IGLG+ G L + Sbjct: 457 AGVFDHQKLYEVTYQVTLNLNKIIDHNYYPVVEASNSNFRHRPIGLGVQGLADTFIRLRL 516 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S EA ++ E E I F A++AS +LA + G Y +FKGS QG F D + + Sbjct: 517 PFESDEAKKLNKEIFETIYFAAMTASKDLAIQDGPYETFKGSPLSQGKFQFDLWNVTPD- 575 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + R W++L+ V G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 576 --------SGRWNWEDLRSDVMNHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 627 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN +L+++L + LW+ M + + +GS+ +I IP ++K+++ T +EI Sbjct: 628 RVLSGEFVVVNKYLLHDLVELGLWNNDMKNQIISANGSVQDIPEIPAEIKELYKTVWEIK 687 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +I+ A+ R ++ Q+QSLNL++ P+ KL ++ AW GLKT YYLR+++A+ Sbjct: 688 MRTIIDMAADRGAYVCQSQSLNLFISSPNASKLTSMHFYAWKKGLKTGMYYLRTQAASQA 747 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS--CTSDTECEVC 953 K T++ GK + PV N IP C+ + C C Sbjct: 748 VKFTIESQGGK-SMEPVIPENGVAVVDEIPDGPVCSMEEGCVTC 790 >gi|118474247|ref|YP_892927.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter fetus subsp. fetus 82-40] gi|118413473|gb|ABK81893.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter fetus subsp. fetus 82-40] Length = 791 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 312/832 (37%), Positives = 440/832 (52%), Gaps = 125/832 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA +GL +VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKYTSEAVAGLDNVSLSELEVDAKIQFRDNITTEEIQQTLIK 60 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ PN+ V AR L Y K T EYF E+G Sbjct: 61 TAVDKIDIDRPNWTFVAARLFL-----------YDLYHKTTGFSGYNSLKEYF----EKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY + N IE+PQ F Sbjct: 106 EKNGRILLGLKEKYDLEDLNAYIKPERDLQFTYLGIKTLYDRYLIKDRNAKPIELPQHMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNELDSQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKR++QN WTL Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRLSQNERWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + DL DLYG EFE Y YE+ + + K LW+K+LT FETG P++ Sbjct: 346 FDPADTPDLCDLYGDEFEKRYIEYEKDPHIAKSSMLAK----ELWKKILTNYFETGMPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------------SSEETAV-- 599 FKD N +P H G++ SSNLCTEI N+ SE+ V Sbjct: 402 CFKDNANRANPNAHKGIIRSSNLCTEIFQNTEPNYYQTKVVFDDGSFKLFDESEDITVDG 461 Query: 600 ----------------------------------CNLGSINLLAHFANNQFDYDKLASTI 625 CNL SINL N++ D +A + Sbjct: 462 GYTKKAKKITALDRLDNKDIFIVEKGIKEGKTAVCNLASINLSK--INSKED---IARVV 516 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A+R+LDNVID+N + K K +N R+IGLG+MG L I + S E +E DE Sbjct: 517 PIAIRMLDNVIDLNFYPHAKVKHTNLASRSIGLGVMGEAQMLAEKGIIWGSYEHLEFIDE 576 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----- 740 ME IS++AI AS LA E+GAY F+GS W +G+FPID +A + +NR Sbjct: 577 VMENISYNAIYASSNLAVEKGAYPDFEGSNWSKGIFPID----MANKNAKALINRGGLFD 632 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W++L+ +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG Sbjct: 633 QNSCDWEKLRAKVKEGGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIP 692 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 V L E Q + A+E+D +I++ Sbjct: 693 SVVPNLNTETWQ-------------------------------FYTPAYELDQKLIIKAG 721 Query: 861 SRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + RQKWIDQ QSLN++ LD+ SG+ L IY AW +G+K+TYYLRS S S Sbjct: 722 AVRQKWIDQGQSLNIFMSLDKASGRYLSEIYTLAWELGVKSTYYLRSESPDS 773 >gi|15227096|ref|NP_179770.1| RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding / ribonucleoside-diphosphate reductase [Arabidopsis thaliana] gi|56749666|sp|Q9SJ20|RIR1_ARATH RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase R1 subunit; Short=AtRNR1 gi|4417273|gb|AAD20398.1| putative ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] gi|14334814|gb|AAK59585.1| putative ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] gi|30793895|gb|AAP40400.1| putative ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] gi|330252128|gb|AEC07222.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis thaliana] Length = 816 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/763 (37%), Positives = 425/763 (55%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L + KK Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTCNHPDYASLAARIAVSNLHKNT-----KK 92 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 T +M ++ G+K+ L+ + + + + L +++ Y+RDF ++Y Sbjct: 93 SFSETIKDM------FYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G+ +E PQ MRVA+G+ + + ++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS---VIQTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH DV EFL+LRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P+E L D +G EFE Y YER+ Sbjct: 324 RARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLADCWGAEFETLYTKYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++LT ETG P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L N FD++KLA T L+ Sbjct: 439 TETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E AK SN HR IG+G+ G A LL +P+ SPEA ++ + E I +HA Sbjct: 499 IIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA G Y ++ GS +G+ D ++ + R W L+ + Sbjct: 559 LKASTELAARLGPYETYAGSPVSKGILQPDMWNVIP----------SDRWDWAVLRDMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + L +GSI N+ IPDDLK I+ T +EI +++ A+ R +IDQ+QSLN Sbjct: 669 LWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+P+ KL ++ W GLKT YYLRSR+A K T+ Sbjct: 729 IHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTV 771 >gi|116200095|ref|XP_001225859.1| ribonucleoside-diphosphate reductase large chain [Chaetomium globosum CBS 148.51] gi|88179482|gb|EAQ86950.1| ribonucleoside-diphosphate reductase large chain [Chaetomium globosum CBS 148.51] Length = 912 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 301/801 (37%), Positives = 444/801 (55%), Gaps = 55/801 (6%) Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ + L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDVDHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKAT----HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 + L ++ KK A +H + +E + + H+ +D +V Sbjct: 82 AVSNLHKQT-----KKQWSAVVSDLYHYVNPKNERASPMIAKETYECVMRHKEELDSAIV 136 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 Y +RDF ++Y G + L Y L +NG +E PQ MRVA+G+ E R Sbjct: 137 Y-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNVE---RV 186 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSG 398 +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + GI+ +L+ AM++K +G Sbjct: 187 IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDSLKTCAMISKMAG 246 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHI 457 G+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE WH Sbjct: 247 GIGLNIHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHA 306 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D YG E Sbjct: 307 DVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMCPNECPGLADCYGDE 366 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 FE YE YE+ A RG + I A LW +L ETG+P++ +KD CN +S Q+++G Sbjct: 367 FEALYEKYEK-AGRGR----KTIKAQKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLG 421 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNV 635 + SSNLCTEI S+ +E AVCNL S+ L NQ +D+ KL + VR L+ + Sbjct: 422 TIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYNQGVYDFQKLHEVAQVVVRNLNKI 481 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID+N + +++A SN HR IG+G+ G A L +P+ SPEA E+ + E I A+ Sbjct: 482 IDVNHYPVQEAYNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQIFETIYHAAL 541 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS +LA+E+G YS+++GS QG+ D + T WD LK ++K Sbjct: 542 TASCDLAKEQGTYSTYEGSPVSQGILQYDMWNVTP----------TGLWDWDALKAKIKE 591 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L L Sbjct: 592 HGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGL 651 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 652 WSDNMKNRIIADGGSIQNIPNIPTDIKALYKTVWEISQRTVVQMAADRGAFIDQSQSLNI 711 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL--------KGVDG 921 ++ EPS K+ ++ W +GLKT YYLR+++A +V++ L KGV G Sbjct: 712 HMREPSMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEALRVQDTNVSKGVSG 771 Query: 922 -KLNAVPVTDPNSSTHSLGIP 941 K A P SS ++ P Sbjct: 772 LKKRAPPAGSYMSSPSAVPRP 792 >gi|46446982|ref|YP_008347.1| ribonucleoside-diphosphate reductase large chain [Candidatus Protochlamydia amoebophila UWE25] gi|46400623|emb|CAF24072.1| probable ribonucleoside-diphosphate reductase large chain [Candidatus Protochlamydia amoebophila UWE25] Length = 773 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 293/759 (38%), Positives = 433/759 (57%), Gaps = 45/759 (5%) Query: 170 CSGLQDVSSKIVL--SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 C GL V VL + + ++DG++ S+L+ + +L K P+YA + +R + Sbjct: 26 CYGLDSVHIDPVLIAMKVIEGLFDGVTTSELDNLAAEVAASLTVKHPDYALLASRIAISN 85 Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-----Y 280 L+ K K+ + LY YI+ G KA L+ E + + +V Sbjct: 86 LQ--------KNTNKSFARTIGELY-----HYIDPKTGKKASLIAEDV--YKIVQNHAEI 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + Y+RDF ++Y G + L Y L ING IE PQ MRV++G+ + A+ Sbjct: 131 LDATMIYDRDFGYDYFGFKTLERSYLLKINGKVIERPQHLLMRVSIGIHKNDISA---AI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E Y+ +S F +TPTLFN+GT +PQ+SSCFL V +D + GIF L+ A +++ +GG Sbjct: 188 ETYHWMSERWFTHATPTLFNAGTPYPQMSSCFLMQVKEDSIEGIFDTLKACAKISQAAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R G++I GT G S G+IP L+V NDTA ++QGG KRKG+ YLE WH D Sbjct: 248 IGLSIHNIRATGSYIRGTGGISNGIIPMLRVYNDTARYIDQGGGKRKGSFAIYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + FLDLRKN G + R D+ TA WIPDLFMKRV ++ W+LF P+E +LH+ +G+EF Sbjct: 308 IYAFLDLRKNHGKEELRARDLFTALWIPDLFMKRVEEDGVWSLFCPNEAPNLHECWGEEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YE++ E+ I A LW K+L ETG+P++ FKD CN +S Q+H+G Sbjct: 368 EHLYCLYEQEGKAREV-----IKAQDLWFKILESQIETGNPYMLFKDACNYKSNQKHLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + SNLCTEI +S E AVCNL SI L N FD+ KL + R LD +ID Sbjct: 423 IKLSNLCTEIIEYTSPHEAAVCNLASIALPRFIINGHFDHQKLFEVTQVITRNLDKIIDE 482 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + I +A+ SN HR IG+G+ G A LL +P+ S EA + E I F A++AS Sbjct: 483 NSYPIVEAQTSNLLHRPIGIGVQGLADAFILLRMPFDSKEARALNQAIFETIYFGALTAS 542 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 +LA+++G Y S++GS +G+ + + +S W+ LK + G+ Sbjct: 543 KDLAKKKGRYPSYEGSPISKGILQYEMWNV----------KPSSNWDWEALKTEIAVHGI 592 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS +A+ PTA+ + I G ++ +P NLY + +SG+F VVN L+ +L +R+LW+E Sbjct: 593 RNSLLVALMPTASTSQILGNNECFEPYTSNLYTRRVLSGEFIVVNKHLMRDLVKRELWNE 652 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 M + +GSI IE IP ++K+++ T +EI LI+ A+ R +I Q+QSLNL+++ Sbjct: 653 EMKQRILAANGSIQGIEEIPSEIKELYKTVWEIKQKALIDMAADRGPFICQSQSLNLFVE 712 Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 P+ KL ++ AW GLKT YYLR ++A K T+ Sbjct: 713 SPTFAKLSSMHFYAWKKGLKTGMYYLRIKAAAEAIKFTV 751 >gi|88597697|ref|ZP_01100930.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|88190001|gb|EAQ93977.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] Length = 789 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 303/826 (36%), Positives = 447/826 (54%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + C Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLCEYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSCQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601 + FKD N +P HVG++ SSNLCTEI N+ E+ V + Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460 Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629 G + ++ + N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQ 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+E+D L+++A+ R KW Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor] gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor] Length = 815 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/763 (36%), Positives = 432/763 (56%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y + R G+ A L+ E + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKDMYMHFNER---SGLMAPLVAEDVYEIIMKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRV++G+ ++ E A+ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKEDIES---AIRTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P+E L D +G+EF+ Y+ YE Q Sbjct: 324 RARDLFYALWVPDLFMQRVQNNGEWSLFCPNEAPGLADCWGEEFDNLYKKYESQG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW +L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEFTSP 438 Query: 595 EETAVCNLGSINLL--------------------AHFANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L + N FD++KLA T L+ Sbjct: 439 NETAVCNLASIALPRFVREKGVPLESHPSKLVGSSDSKNRYFDFEKLAEVTSTVTYNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + +E AK+SN HR IG+G+ G LL +P+ SPEA ++ + E I +H+ Sbjct: 499 IIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHS 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA + G Y +++GS +G+ D ++ ++R W L++ + Sbjct: 559 LKASAELAAKEGPYETYEGSPVSKGILQPDMWDVVP----------SNRWNWPSLRETIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 KVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W + + + Y DGS+ I IPDDLK I+ T +EI L++ A R +IDQ+QSLN Sbjct: 669 IWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++++ + KL ++ AW GLKT YYLR+R+A K T+ Sbjct: 729 VHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771 >gi|68525530|ref|XP_723625.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii yoelii str. 17XNL] gi|23477980|gb|EAA15190.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii yoelii] Length = 847 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 297/788 (37%), Positives = 434/788 (55%), Gaps = 52/788 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ +L+ + + P+++ + AR + L + + K + Sbjct: 87 MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAKVAE------- 139 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305 LY R G A L+ + + DF + + L ++ Y RDF ++Y G + L Y Sbjct: 140 -ALYSYKDIR----GRSASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN IE PQ MRV++G+ + + EK A+E Y+L+S +F +TPTLFNSGT Sbjct: 195 LLRINNKIIERPQHLLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGTPR 251 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL ++ D + GIF L++ A+++K +GG+G +RG ++I GTNG S G+ Sbjct: 252 PQMSSCFLLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAI 371 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFMKRV +N WTL P+E L + +G+EFE Y YE + + G+ + + A Sbjct: 372 WVPDLFMKRVKENRNWTLMCPNECPGLSESWGEEFEKLYTKYEEE-NLGK----KTVLAQ 426 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL Sbjct: 427 DLWFAILQSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486 Query: 604 SINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L +FD+ KL + R LD +I+ N + I++A+KSN HR IG+G+ Sbjct: 487 SIALCKFVDREKKEFDFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQ 546 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G LL PY S EA E+ E + + A+ SVELAQ G Y S+KGS QG+ Sbjct: 547 GLADTFMLLRYPYESDEAKELNKRIFETMYYAALEMSVELAQIHGPYESYKGSPASQGIL 606 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D + + WD LKK++ G+RNS +A PTA+ + I G ++S Sbjct: 607 QFDMWNVKVD---------NKYWDWDLLKKKISMHGLRNSLLLAPMPTASTSQILGNNES 657 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP DL Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADL 717 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K+++ T +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777 Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945 YYLR+++AT K T LK DG V+ ST S ++C Sbjct: 778 YYLRTQAATDAIKFTVDTQVAKNAEKLKNADGVAITREVSRETISTESTVTQNACPLRRN 837 Query: 946 SDTECEVC 953 +D C +C Sbjct: 838 NDEPCLMC 845 >gi|320593756|gb|EFX06165.1| ribonucleotide reductase large subunit [Grosmannia clavigera kw1407] Length = 913 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/759 (37%), Positives = 433/759 (57%), Gaps = 51/759 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + + + + +Y G++ + L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDTEHIDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAVLAARI 81 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ V+T +Y P+ T M +E + H+ Sbjct: 82 AVSNLHKQTKKQWSAVITDLYNYVNPRNNTLSPMIS----------KETYDCVMRHKE-- 129 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 DFD + + Y+RDF ++Y G + L Y L +NG +E PQ MRVA+G+ E Sbjct: 130 DFD-----SAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNVE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 R VE YN +S+ F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ AM+ Sbjct: 185 ---RVVETYNYMSNKFFTHASPTLFNAGTPQAQMSSCFLVDMKDDSIEGIYDTLKTCAMI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA C YL Sbjct: 242 SKTAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVYNNTARYVDQGGNKRPGAFCIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E + D Sbjct: 302 EPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMCPNECPGMAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG+EFE YE YER+ RG + + A LW +L ETG+P++ +KD CN +S Sbjct: 362 CYGEEFEALYEKYEREG-RGR----KTVKAQKLWYAILEAQTETGNPFMLYKDHCNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI S+ +E AVCNL S+ L + N +D+ KL + VR Sbjct: 417 QKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPSFVDYTNETYDFKKLHEVAQLVVR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L++VID+N + + +AK SN HR IGLG+ G A L +P+ SPEA E+ + E I Sbjct: 477 NLNHVIDVNYYPVPEAKNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A++AS ELA+ G YS+++GS QG+ D + +V+ + WD L+ Sbjct: 537 YHAALTASCELAKIEGTYSTYEGSPVSQGILQPD----MWDVKP------SDLWDWDSLR 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 LKIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 647 VDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 QSLN+++ EP+ K+ ++ W +GLKT YYLR+++A Sbjct: 707 QSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAA 745 >gi|255530603|ref|YP_003090975.1| ribonucleoside-diphosphate reductase subunit alpha [Pedobacter heparinus DSM 2366] gi|255343587|gb|ACU02913.1| ribonucleoside-diphosphate reductase, alpha subunit [Pedobacter heparinus DSM 2366] Length = 792 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 295/797 (37%), Positives = 451/797 (56%), Gaps = 51/797 (6%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG + ++ +E+ C G DV+ K++ + +YDG++ S+L+ Sbjct: 3 VIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVI-----EGLYDGVTTSELD 57 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ +L K P+YA + +R + L +K K+ M+ LY Y Sbjct: 58 NLAAETAASLTTKHPDYALLASRIAVSNL--------HKNTTKSFSKTMEMLY-----NY 104 Query: 260 IEEGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 ++ + A L+ + + + + L + + Y+RDF F+Y G + L Y L ++G + Sbjct: 105 VDSKTEKPASLIADDVWEVIEKNADILDSTIIYDRDFGFDYFGFKTLEKSYLLKVDGQIV 164 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FMRVA+G+ + + A+E YNL+S F +TPTLFN+ T PQ+SSCFL Sbjct: 165 ERPQHLFMRVAVGIHKGDIDS---AIETYNLMSERWFTHATPTLFNAATPKPQMSSCFLL 221 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ DD + GI+ L++ A +++ +GG+G +R G++I GTNG S G++P LKV ND Sbjct: 222 TMQDDSIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFND 281 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKGA YLE WH DV FLDLRKN G + R D+ A W+ DLFM+R Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADVLSFLDLRKNHGKEELRARDLFYALWVCDLFMRR 341 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +N W+LF P E L D +G+EF+ YE YE++ + + I A LW +L Sbjct: 342 VEENGDWSLFCPHEAPGLADCFGEEFDALYERYEQEG-----RARKTIKAQELWFAILDS 396 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD N +S QQ++G + SSNLCTEI +S +E AVCNL S+ L Sbjct: 397 QIETGTPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVI 456 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 N +FD+ KL A L+ +ID N + +E+A+ SN HR +GLG+ G A L+ + Sbjct: 457 NGEFDHQKLYDVTYQATVNLNKIIDYNYYPVEEARNSNMRHRPVGLGVQGLADAFILMRL 516 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S A + E E I F A++AS +LA + G Y +FKGS QG F D L +V Sbjct: 517 PFESEGARILNKEIFETIYFAAMTASHDLAVKNGPYETFKGSPLSQGKFQFD----LWKV 572 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + + R W+ L+++V G+ NS +A PTA+ + I G ++ +P N+Y + Sbjct: 573 QPD-----SGRWDWETLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 627 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN L+ +L LW AM + +GSI +I IPD +K+++ T +EI Sbjct: 628 RVLSGEFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIK 687 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +I+ A+ R +I Q+QSLNL+++ P+ KL ++ AW GLKT YYLR+++A+ Sbjct: 688 MRSIIDMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQA 747 Query: 912 EKSTLKGVDGKLNAVPV 928 K T++ GK N PV Sbjct: 748 VKFTVENQAGK-NMEPV 763 >gi|19115403|ref|NP_594491.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces pombe 972h-] gi|1350600|sp|P36602|RIR1_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase gi|1067207|emb|CAA91952.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces pombe] Length = 811 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 284/762 (37%), Positives = 438/762 (57%), Gaps = 37/762 (4%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ +L+ ++ T+ K P+YA + AR Sbjct: 22 VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81 Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 + L ++ V +TV ++ + + P + + +K H+ +D ++Y Sbjct: 82 AVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMK----HKDELDSAIIY 137 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +RDF + + G + L Y L I+G E PQ MRVA+G+ ++ E A+ Sbjct: 138 -------DRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDIEA---AI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F ++PTLFN+GT PQLSSCFL T+ DD + GI+ L+ AM++K +GG Sbjct: 188 ETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAMISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +R G++I GTNG S G++P ++V N+TA V+QGG KR GA AYLE WH D Sbjct: 248 IGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V +FL+LRK G++ R +M A WIPDLFM+RV +N WT F P+E L D++G EF Sbjct: 308 VMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLADVWGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 YE YE++ +RG R + A +W +L ETG+P++ +KD CN +S Q++VG Sbjct: 368 VALYEKYEKE-NRGR----RSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + SNLCTEI SS +E AVCNL S+ L + ++++ KL ++ R L+ +ID+ Sbjct: 423 IRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKIIDV 482 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + +A++SN HR +GLG+ G A L +P+ S A ++ + E I A+ AS Sbjct: 483 NYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEAS 542 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 E+AQ G Y S++GS QG+ D + N T W ELK+++ G+ Sbjct: 543 CEIAQVEGTYESYEGSPASQGILQYDMWNV----------NPTDLWDWAELKEKIAKHGI 592 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L +RDLW+E Sbjct: 593 RNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 M + L DGSI I IP DLK ++ T +EI +I+ A+ R +IDQ+QSLN++L Sbjct: 653 DMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLK 712 Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 +PS K+ ++ W GLKT YYLR+ +A++ K T+ V Sbjct: 713 DPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754 >gi|62897131|dbj|BAD96506.1| ribonucleoside-diphosphate reductase M1 chain variant [Homo sapiens] Length = 792 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/762 (37%), Positives = 443/762 (58%), Gaps = 42/762 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L NG E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKTNGKVAERPQHMLMRVSVGIHKEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + I + A+ Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFGTIYYGAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|224096482|ref|XP_002310626.1| predicted protein [Populus trichocarpa] gi|222853529|gb|EEE91076.1| predicted protein [Populus trichocarpa] Length = 812 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/763 (37%), Positives = 432/763 (56%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR V++ ++K Sbjct: 38 LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 K+ ++ +Y + + G+KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 THKSFSETIKIMYNHFNEK---SGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRVA+G+ + + A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---ALKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH DV EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P E L D +GKEFE Y YER Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLADCWGKEFEELYTRYERDG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINL------------------LAHFANNQ--FDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L + +N+ FD++KLA L+ Sbjct: 439 TETAVCNLASIALPRFVREMGVPIESHPSKVVGSRGSNRRYFDFEKLAEVTGVVTVNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E A++SN HR IG+G+ G A LL + + SPEA ++ + E I +HA Sbjct: 499 IIDVNYYPVETARRSNFRHRPIGIGVQGLADAFMLLGMAFDSPEAQKLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS E+A G Y ++ GS +G+ D G+ +S WD L++ + Sbjct: 559 LKASSEIAAREGPYETYVGSPVSKGILQPDMWGVTP----------SSLWNWDALREMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 KNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW A+ + + Y DGS+ I I DDLK I+ T +EI L++ A R +IDQ+QSLN Sbjct: 669 LWSPALKNKIIYEDGSVQKIPEISDDLKCIYKTVWEIKQKTLVDMAVDRGCFIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+P+ KL ++ AW GLKT YYLRS++A K T+ Sbjct: 729 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAADAIKFTV 771 >gi|302805775|ref|XP_002984638.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii] gi|300147620|gb|EFJ14283.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii] Length = 803 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/761 (37%), Positives = 434/761 (57%), Gaps = 54/761 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 IV + +Y G++ S L+ ++ ++ P+YA + AR V++ ++KK Sbjct: 38 IVAQKVCAGVYKGVTTSQLDELAAETAASMTTSHPDYAILAARI--------VVSNLHKK 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y R G+KA L+ + D + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETVKEMYSHVDER---SGLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L +NG +E PQ MRV++G+ ++ E A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVNGRVVERPQHMLMRVSVGIHKEDIEA---AIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + +D + GI+ L+E A+++K +GG+G +R ++I Sbjct: 204 TLFNAGTPRPQLSSCFLLCMKEDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATNSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH DV ++LDL+KN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADVFDWLDLKKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV N+ W+LF P+E L D +G+EFE Y YER+ Sbjct: 324 RARDLFYGLWIPDLFMERVRSNSDWSLFCPNEAPGLADCWGEEFESLYTRYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + R +SA LW +L ETG+P++ FKD CN +S QQ++G + SNLCTEI +S Sbjct: 379 RAKRSLSAQKLWFAILESQMETGNPYMVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSP 438 Query: 595 EETAVCNLGSINLLAHFANNQ------------------FDYDKLASTIRTAVRVLDNVI 636 ETAVCNL SI L F Q FD+ KLA L+ +I Sbjct: 439 SETAVCNLASI-ALPRFVREQGINSETKLVGSKGCKNRVFDFHKLAEVTTVVTENLNKII 497 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + ++ AK+SN HR IG+G+ G A LL +P+ S EA ++ + E I +HA+ Sbjct: 498 DINYYPVDTAKRSNLRHRPIGIGVQGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMK 557 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S LA+ G Y ++ GS +GVF D ++ + R W LK+ V Sbjct: 558 TSSILAELYGVYETYPGSPVSKGVFQPDMWNVIP----------SGRWDWAALKEMVARH 607 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+N+L +W Sbjct: 608 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIW 667 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + + ++GSI +IE IPDDLK+I+ T +EI +++ A R +IDQ+QSLN++ Sbjct: 668 TPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIH 727 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++P+ KL ++ AW GLKT YYLRS++A K T+ Sbjct: 728 MEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTV 768 >gi|1710391|sp|P50648|RIR1_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase R1 subunit gi|497904|gb|AAA50171.1| ribonucleotide reductase large subunit [Plasmodium falciparum] Length = 806 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 296/788 (37%), Positives = 436/788 (55%), Gaps = 52/788 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ +L+ + + P+++ + AR + L +K Sbjct: 46 MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL--------HKNTSDDVAEVA 97 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305 + LY R G A L+ + + DF L++ L ++ Y RDF ++Y G + L Y Sbjct: 98 EALYTYKDVR----GRPASLISKEVYDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSY 153 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN IE PQ MRV++G+ + + +K A+E Y+L+S +F +TPTLFNSGT Sbjct: 154 LLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPR 210 Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL ++ D + GIF L++ A+++K +GG+G +RG ++I GTNG S G+ Sbjct: 211 PQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 270 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A Sbjct: 271 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAV 330 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFMKRV +N WTL P+E L + +G+EFE Y YE + + G+ + + A Sbjct: 331 WVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEE-NMGK----KTVLAQ 385 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL Sbjct: 386 DLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 445 Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L +F++ KL + R LD +I+ N + +++AK SN HR IG+G+ Sbjct: 446 SIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQ 505 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G LL PY S A E+ E + + A+ SVELA G Y S++GS QG+ Sbjct: 506 GLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGIL 565 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D A+V ++ WDELK +++ G+RNS +A PTA+ + I G ++S Sbjct: 566 QFDMWN--AKVDNKY-------WDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNES 616 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+ +L R LWDE M L H+GSI I IPDDL Sbjct: 617 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDL 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K+++ T +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT Sbjct: 677 KELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 736 Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945 YYLR+++AT K T LK DG V+ ST S + C Sbjct: 737 YYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRN 796 Query: 946 SDTECEVC 953 +D +C +C Sbjct: 797 NDEQCLMC 804 >gi|89890042|ref|ZP_01201553.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria bacterium BBFL7] gi|89518315|gb|EAS20971.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria bacterium BBFL7] Length = 828 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 292/779 (37%), Positives = 440/779 (56%), Gaps = 48/779 (6%) Query: 166 VEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V + C GL + V V +YDG++ S+L+ ++ T+ P+YA++ AR Sbjct: 22 VRKLCYGLSNHVDPVKVAMRVIDGLYDGVTTSELDNLAAETAATMTTAHPDYARLAARIS 81 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---- 280 + L +K +K + LY E V R ++ M D VY Sbjct: 82 VSNL--------HKNTKKTFTDVVTDLY---------EYVNPRTEKKAPMISDEVYQVIQ 124 Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 L + + Y RDF ++Y G + L Y L ING E PQ MRV++G+ + + + Sbjct: 125 DNADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGKIAERPQHMLMRVSVGIHMDDLDA 184 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 A+E Y L+S F +TPTLFN+GT PQ+SSCFL T+ DD + GI+ L++ A ++ Sbjct: 185 ---AIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEGIYDTLKQTAKIS 241 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 + +GG+G +R G++I GTNG S G++P LKV NDTA V+QGG KRKG+ Y+E Sbjct: 242 QSAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGGGKRKGSFAIYME 301 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +FLDL+KN G + R D+ A W+ DLFMKRV N WTL P E DL+++ Sbjct: 302 PWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTLMCPHECPDLYNV 361 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG EFE Y YE++ K + I A LW K+L ETG P++ +KD N +S Q Sbjct: 362 YGDEFEALYTKYEQEG-----KGRKTIQARELWDKILESQIETGTPYMLYKDAANNKSNQ 416 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +++G + SSNLCTEI +S +E AVCNL SI L + FD+ L + R L+ Sbjct: 417 KNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKDGAFDHKALYKVTKRVTRNLN 476 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 VID N + + +A+ SN HR +GLG+ G A +L +P+ S EA ++ E E + F Sbjct: 477 KVIDRNYYPVIEARNSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKKLNSEIFETLYFA 536 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A AS+E+AQE GAYS+F+GS QG F + + + D + + R W +L+ +V Sbjct: 537 ACEASMEMAQEEGAYSTFEGSPMSQGEFQFN----MWNINDS---DLSGRWNWSDLRTKV 589 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIVVNKHLLKDLVDL 649 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LWD+++ + + ++GSI IE IP+D+K+++ T +E+ +I+ + +R +IDQ+QSL Sbjct: 650 GLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSRQRGYFIDQSQSL 709 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 NL+++ + KL ++ AW GLKT YYLR+++A K T V + PV P Sbjct: 710 NLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFT---VTKEAKKAPVAQP 765 >gi|313768342|ref|YP_004062022.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1] gi|312599038|gb|ADQ91062.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1] Length = 749 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 280/742 (37%), Positives = 422/742 (56%), Gaps = 44/742 (5%) Query: 172 GLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230 GL D S V + + +MYD ++ +++T +I +P+Y + R + +++ Sbjct: 28 GLSDKCDSSKVAQQVFSSMYDNITTQEIDTLSAEICVGMITSDPDYETLATRIVASNIQK 87 Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + P F + + KA ++ + +++ + +K +RD Sbjct: 88 --------------------VCPNNFHLAMRKLQKAGIITDEVVEV-AQQVKEHIKSDRD 126 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 F F Y GL+ L Y ++G IE PQ FMRVA+G+ K+ A++ YN +S Sbjct: 127 FDFGYFGLKTLEKSYLQRVDGKLIETPQYMFMRVAIGIHGKDVPS---ALDTYNKMSQGL 183 Query: 351 FMCSTPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ +TPTLFN+GT PQ+SSCFL D + GI+G L E A ++K++GG+G +R Sbjct: 184 FIHATPTLFNAGTPRPQMSSCFLIANKADSIDGIYGTLTECAQISKWAGGIGMHIHDIRA 243 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 + I GTNG+S G+IP L+V N TA VNQ G+RKG++ YLE WH D+ +FL+LR N Sbjct: 244 NKSRIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHSDIMDFLELRLNQ 303 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 GD+ R D+ +A WIPDLFMKRV + W+LF PD+ L D+YG+EFE Y YE + Sbjct: 304 GDEEARCRDLFSAMWIPDLFMKRVEEGGNWSLFCPDKAKGLSDVYGQEFEDLYTKYEEEG 363 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + A +W+ +L ETG P++ +KD CN +S Q+++GV+ SSNLCTEI Sbjct: 364 LANAT-----VPAADVWKAILKSQTETGTPYMLYKDACNSKSNQKNLGVIKSSNLCTEIL 418 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + +ET+VCNL SI L + N + FDYDKL +T + L+ VID N + +E A Sbjct: 419 EYTDKDETSVCNLASI-ALPKYVNKETKTFDYDKLHEITKTVTKNLNRVIDRNFYPVETA 477 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++SN HR IGLG+ G L +P+ E+ + E + A+ AS ELA+ G Sbjct: 478 RRSNMKHRPIGLGVQGLADVFILCGLPFDCEESRLMNAHIFETMYHAALEASSELAEVEG 537 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 +Y SFKGS +GV D + + R WD +++RVKT G+RNS MA Sbjct: 538 SYESFKGSPAAEGVLQPDMW--------DGETKFSGRYDWDAMRERVKTKGLRNSLLMAP 589 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTA+ A I G ++ +P N+Y++ ++G+F VVN LV++LK+ LW + M + Sbjct: 590 MPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVDDLKKVGLWSKEMKDLMVK 649 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 GSI NI IPDD+K ++ T +EI +I+ A+ R ++IDQ+QS+NL+++ P+ KL Sbjct: 650 AGGSIQNIVDIPDDIKNLYKTVWEISQKCIIDMAADRGRFIDQSQSMNLFMESPTLSKLS 709 Query: 887 FIYRQAWLMGLKT-TYYLRSRS 907 ++ AW GLKT YYLRS++ Sbjct: 710 SMHMYAWKAGLKTGMYYLRSKA 731 >gi|313675914|ref|YP_004053910.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga tractuosa DSM 4126] gi|312942612|gb|ADR21802.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga tractuosa DSM 4126] Length = 826 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 294/802 (36%), Positives = 455/802 (56%), Gaps = 75/802 (9%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG + ++ +E+ C GL DV+ K++ +YDG++ +L+ Sbjct: 3 VVKRDGRRETVKFDKITARIEKLCYGLDLNYIQPIDVARKVI-----NGIYDGVTTQELD 57 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ ++ K P+Y+K++AR + L +K K+ + M+ LY Y Sbjct: 58 NLAAETAASMTVKHPDYSKLSARIAISNL--------HKTTSKSFSNTMKRLYT-----Y 104 Query: 260 IEE--GVKARLL----------HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 ++ G A LL H + +D ++Y +RDF +++ G + L Y + Sbjct: 105 VDAKTGQNAPLLSTETYGIIKKHAAQLDSAIIY-------DRDFGYDFFGFKTLERSYLM 157 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 ++G +E PQ MRVA+G+ ++ E A++ YNL+S F +TPTLFN+GT PQ Sbjct: 158 KVDGKIVERPQHMLMRVAIGIHGEDIES---AIKTYNLMSEKWFTHATPTLFNAGTPKPQ 214 Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCFL T+ +D + GI+ L++ A +++ +GG+G VR G++I GT G S G++P Sbjct: 215 LSSCFLLTIQEDSIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTGGVSNGIVP 274 Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+ + TA V+QGG KRKG+ YLE WH D+ +FLDL+KN G + R D+ A W+ Sbjct: 275 MLRNFDMTARYVDQGGGKRKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWM 334 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 DLFMKRV NA WTLF P+E S L + YG +FE YE YER+ K + + A L Sbjct: 335 SDLFMKRVEANAEWTLFDPNEASGLDEAYGDDFEKLYEKYEREG-----KGRKTVKAQEL 389 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++L ETG P++ +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI Sbjct: 390 WFEILESQIETGTPYMLYKDAANKKSNQKNLGTIKSSNLCTEILEYTSKDEVAVCNLASI 449 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L ++ FD+DKL TA L+ VID+N + +E+A+ SN HR IGLG+ Sbjct: 450 ALPMFVQEDENGQKFFDHDKLYDITYTATVNLNRVIDVNYYPVEEARTSNMRHRPIGLGV 509 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A LL P+ S E+ ++ E E I F A++AS +LA + G Y ++KGS +G+ Sbjct: 510 QGLADAFMLLRYPFDSEESRKLNKEIFETIYFAAMTASKDLAVKEGPYETYKGSPVSKGI 569 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 F D + T R W LK+ VK G+RNS +A PTA+ + I G ++ Sbjct: 570 FQFDMWNV----------EPTDRWDWTTLKQEVKKNGVRNSLLVAPMPTASTSQILGNNE 619 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+ +L +R +W++ M + L +GS+ +I IP D Sbjct: 620 CFEPYTSNIYTRRTLSGEFVVVNKHLMRDLIERGMWNDNMKNKLIAANGSVQDIADIPQD 679 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 +K+++ T +EI +I+ A+ R +I Q+QS+NL++ +P+ K+ ++ AW GLKT Sbjct: 680 IKELYKTVWEISQKAIIDMAADRGAYICQSQSMNLFMQDPNFGKMTSMHFYAWKKGLKTG 739 Query: 900 TYYLRSRSATS-----VEKSTL 916 YYLRS++ATS V+KS L Sbjct: 740 MYYLRSKAATSAIQFTVDKSQL 761 >gi|242063422|ref|XP_002453000.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor] gi|241932831|gb|EES05976.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor] Length = 810 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/800 (35%), Positives = 438/800 (54%), Gaps = 55/800 (6%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ ++ ++ + P+YA + AR + L + +T+ Sbjct: 38 LVAQKVCAGVYKGITTGEIGELAAETAAAMTTSHPDYASLAARIAVSNLHKNTMTSF--- 94 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 AT ++ LY Y R G+ A L+ + + + L ++ Y+RDF ++Y Sbjct: 95 --SAT---VKALYTHYDER---SGLMAPLIADDVFTIIMKNTARLECEINYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I G E PQ MRV++G+ + E A++ Y+++S F ++P Sbjct: 147 GFKTLQRSYLLKIGGKVAERPQHMLMRVSVGIHKDDIES---AIKTYHMMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L E A ++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLSECAAISKSAGGIGVSIHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDL+KN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHPDIFEFLDLKKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P E L D +G EF+ Y+ YER+ Sbjct: 324 RARDLFYALWVPDLFMERVQHNEQWSLFCPSEAPGLADCWGDEFQNLYQKYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + ++A ALW +L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVAAQALWFDILKAQIETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINLL-----------AHFA---------NNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L +H A N FD+DKLA L+ Sbjct: 439 SETAVCNLASIALPRFVREKGVPIESHPAKLVGSSGSKNRYFDFDKLAEITSIVTCNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDI+ + IE A++SN HR IG+G+ G LL +P+ SPEA ++ + E I +H+ Sbjct: 499 IIDISYYPIENARRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHS 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA + G Y ++ GS +G+ D ++ +SR W +++ + Sbjct: 559 LKASAELAAKEGPYETYAGSPVSKGILQPDMWNVVP----------SSRWNWSAIREMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 QVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLSEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W + + + Y DGS+ I +PDDLK I+ T +EI +++ A R +IDQ+QSLN Sbjct: 669 VWSPVLKNKIIYEDGSVQKITEVPDDLKAIYKTVWEIKQKTIVDMAIDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 +++++P+ KL ++ W GLKT YYLR+R+A K T+ K + ++ Sbjct: 729 IHMEQPNSGKLTSLHFHGWSKGLKTGMYYLRTRAAADAIKFTVDTTLLKDKQPTSEEEDA 788 Query: 934 STHSLGIPSSCTSDTECEVC 953 + S + EC C Sbjct: 789 QVKMAQVACSLNNREECLAC 808 >gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata] Length = 810 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/798 (36%), Positives = 442/798 (55%), Gaps = 51/798 (6%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR V++ ++K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 +K+ ++ +Y + R +E + A ++E +M + L +++ Y+RDF ++Y G Sbjct: 90 TKKSFSETIKLMYHHFNERSGQEAPLIADDVYEIIMK-NAARLDSEIIYDRDFDYDYFGF 148 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 + L Y L ++G +E PQ MRVA+G+ + K + Y+L+S F ++PTL Sbjct: 149 KTLERSYLLKVSGMVVERPQHMLMRVAVGI---HKDDIKSVIRTYHLMSQRWFTHASPTL 205 Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 FN+GT PQLSSCFL + +D + GI+ L+E A+++K +GG+G +R G++I GT Sbjct: 206 FNAGTPRPQLSSCFLICMKEDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGT 265 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 NG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFL+LRKN G + R Sbjct: 266 NGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMYEFLELRKNHGKEEHRA 325 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 D+ A WIPDLFM+RV N W+LF P+E L D +G EFE Y YE D G+ K Sbjct: 326 RDLFYALWIPDLFMERVQSNGQWSLFCPNEAPGLADCWGDEFEKLYLKYE---DEGKAK- 381 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 + ++A LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTEI +S E Sbjct: 382 -KVVAAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTE 440 Query: 597 TAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDNVI 636 TAVCNL SI L N FD+DKL L+ +I Sbjct: 441 TAVCNLASIALPRFVREKGVPLESHPSRLVGSSGSKNRYFDFDKLGEVTAIITENLNKII 500 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + +E A++SN HR IG+G+ G LL +P+ SPEA ++ + E I +HA+ Sbjct: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALK 560 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 +S E+A G Y +++GS +G+ D + + R W L++ + Sbjct: 561 SSSEIAISSGPYETYQGSPVSKGILQPDMWNV----------TLSDRWDWAALREMISKN 610 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + LW Sbjct: 611 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 A+ + + Y DGS+ I IPD+LK I+ T +EI L++ A R +IDQ+QSLN++ Sbjct: 671 SPALKNKIIYEDGSVLKIPEIPDNLKAIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIH 730 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 +D+P+ KL ++ AW GLKT YYLRSR+A K T+ + PV D + Sbjct: 731 MDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTSLLQKTTKPVEDDDVEA 790 Query: 936 HSLGIPSSCTSDTECEVC 953 + S + EC C Sbjct: 791 KMAQVVCSLENREECMAC 808 >gi|302689939|ref|XP_003034649.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8] gi|300108344|gb|EFI99746.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8] Length = 892 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 289/787 (36%), Positives = 447/787 (56%), Gaps = 51/787 (6%) Query: 161 RLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 +++ +++ C GL + V + + + +Y G++ +L+ ++ L + P+YA Sbjct: 20 KIQSRIKKLCYGLDMRHVDPLAITIKVVQGVYHGVTTVELDNLAAETAAYLTTQHPDYAV 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHES---- 272 + AR + L +E K+ ++ LY Y+ + G +A ++ ++ Sbjct: 80 LAARIAISNLHKET--------TKSFSQVVEKLY-----NYVNPKNGKRASMISDATYKV 126 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 +MD + L + + Y+RDFA+ Y G + L Y L ING E PQ MRVA+G+ Sbjct: 127 VMD-NAETLDSAIIYDRDFAYNYFGFKTLERSYLLRINGRVAERPQHMIMRVAVGIHGDN 185 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 E R +E YNL+S +F ++PTLFN+GT HPQ+SSCFL ++ DD + GI+ L++ A Sbjct: 186 IE---RVLETYNLMSDRYFTHASPTLFNAGTPHPQMSSCFLVSMKDDSIEGIYDTLKQCA 242 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 M++K +GG+G + +R G++I GTNG S G++P L+ + TA V+QGG KR GA Sbjct: 243 MISKTAGGIGLNIHNIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAFAI 302 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH DV EFLDLRKN G + +R D+ A WIPDLFMKRV W+LF P+E L Sbjct: 303 YLEPWHPDVFEFLDLRKNHGKEEQRARDLFYALWIPDLFMKRVESGGDWSLFCPNEAPGL 362 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D +G EFE Y YE E + +KI A LW +L ETG+P++ +KD N + Sbjct: 363 ADCWGDEFEALYAKYE-----AEGRERKKIPAQKLWYAILEAQIETGNPFMLYKDSANRK 417 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 S QQ++G + SSNLCTEI S+ +ETAVCNL S+ L + +D+ KL + R Sbjct: 418 SNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASLALPTFIRDGVYDFQKLHDVTKVVTR 477 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +ID+N + + +A++SN HR IGLG+ G A L +P+ SPEA E+ + E I Sbjct: 478 NLNKIIDVNYYPVPEARRSNMRHRPIGLGVQGLADAFMALRMPFDSPEARELNKQIFETI 537 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A AS +LA+E G Y +++GS QG D G+ + W LK Sbjct: 538 YHAACEASSDLAEEEGPYETWEGSPASQGQLQFDLWGVTP----------SDLWDWASLK 587 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ GMRN+ +A PTA+ + I G ++ +P N+Y + ++G+F VV +L+ EL Sbjct: 588 AKIARTGMRNALLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLREL 647 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + LWD+ M + + ++GSI +I RIPDD+K I+ T +EI +++ A+ R +I Q+ Sbjct: 648 VDKGLWDDKMKNQIIANNGSIQSIARIPDDIKAIYKTVWEISQKKVLDLAADRGPFICQS 707 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK---GVDG 921 QSLN++L P+ +L ++ W GLKT YYLR+R A+ +V+++ LK +G Sbjct: 708 QSLNVHLAAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPASQAIQFTVDQAMLKESNKAEG 767 Query: 922 KLNAVPV 928 ++ P Sbjct: 768 EVAGAPA 774 >gi|57169016|ref|ZP_00368144.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228] gi|305432548|ref|ZP_07401709.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter coli JV20] gi|57019561|gb|EAL56251.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228] gi|304444259|gb|EFM36911.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter coli JV20] Length = 789 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 308/826 (37%), Positives = 446/826 (53%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L + +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTQDLCDLYGEAFEKRYEEYEKDESIAKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601 + FKD N +P HVG++ SSNLCTEI N+ EE + + Sbjct: 401 LCFKDNANKANPNAHVGIIRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIID 460 Query: 602 LG------SINLLAHFANNQ--------------------------FDYDKLASTIRTAV 629 G I+ L F N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDSFNGNKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEK 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 IS+ AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISYEAINASSNLAIEKGSYPDFEGSNWSKGIFPIDVASEKAKALTLREGLF--NQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D+L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 639 DKLREKVKEDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL 698 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E Q + A+E+D L+++A+ R KW Sbjct: 699 SLETWQ-------------------------------YYTPAYELDQRILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNDIYQLAWELGVKSTYYLRSESPDS 773 >gi|226293011|gb|EEH48431.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb18] Length = 881 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/776 (36%), Positives = 438/776 (56%), Gaps = 44/776 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ KK + ++ Y + G A ++ +S + + + Sbjct: 82 AVSNLHKQT-----KKQFSSVIDDL------YHYHNPKNGRPAPMISQSTYEIVMRHADE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + E R + Sbjct: 131 FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAIGIHGDDVE---RVI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K +GG Sbjct: 188 ETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH+D Sbjct: 248 IGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHMD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG EF Sbjct: 308 IFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE YE++ RG+ + I A LW +L ETG+P++ +KD CN +S Q+++G Sbjct: 368 EALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SSNLCTEI S +E AVCNL SI L ++D+ KL + VR L+ +I Sbjct: 423 IRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVRNLNRII 482 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D N + +E+AK+SN HR I G+ G A L +P+ SPEA ++ + E I ++ Sbjct: 483 DRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHACLT 542 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA+ G YSS++GS QG+ D G+ T WD LK+ + Sbjct: 543 ASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----------TDLWDWDSLKQEIAKH 592 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L LW Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN++ Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAV 926 L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D + V Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNVARV 768 >gi|168022742|ref|XP_001763898.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684903|gb|EDQ71302.1| predicted protein [Physcomitrella patens subsp. patens] Length = 811 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/763 (37%), Positives = 433/763 (56%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L + KK Sbjct: 38 LVAQKVCMGVYKGVTTSQLDELAAETAAAMTANHPDYAILAARIAVSNLHKNT-----KK 92 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 T +M Y+ G+K+ L+ + + D + L +++ Y+RDF ++Y Sbjct: 93 SFSETVKDM------YYHVNERSGLKSPLIADDVYDIIIKNAPRLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L +NG +E PQ MRV++G+ + E ++ Y+++S F ++P Sbjct: 147 GFKTLERSYLLKVNGKVVERPQHMLMRVSVGIHKENIEA---VLKTYHMMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + +D + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLLCMKNDSIEGIYDTLKECAVISKSAGGIGLSVHNIRTTGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G+IP L+V NDTA V+QGG KRKGA YLE WH D+ E+LDLRKN G + Sbjct: 264 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEWLDLRKNHGKEES 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV N W+LF P+E L D +G++FE Y YE + ++ Sbjct: 324 RARDLFYGLWIPDLFMQRVQNNGTWSLFCPNEAPGLADCWGEQFETLYARYELEGRAKKV 383 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + A LW +L ETG+P+I FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 384 -----VQAQKLWFAVLEAQIETGNPYILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSP 438 Query: 595 EETAVCNLGS-----------INLLAH---------FANNQFDYDKLASTIRTAVRVLDN 634 +ETAVCNL S ++L +H N FD++KL R L+ Sbjct: 439 DETAVCNLASLALPRFVREKGVSLESHPTKIIGSNGHENRFFDFNKLGEITSLVTRNLNR 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E A++SN HR IGLG+ G A LL +P+ S EA ++ + E I +HA Sbjct: 499 IIDVNYYPVETARRSNMRHRPIGLGVQGLADAFILLGMPFDSEEAQQLNRDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + S ELA E G Y ++ GS PI L ++ + + ++R WD L++ + Sbjct: 559 LKTSCELAAEEGVYETYAGS-------PISKGALQPDMWN---VKPSTRWDWDSLRQMIL 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+N+L Sbjct: 609 NNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTNMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + + YH+GSI I+ IPDDLKKI+ T +EI +++ A+ R +IDQ+QSLN Sbjct: 669 LWTHDLKNQVIYHNGSIQQIDVIPDDLKKIYRTVWEIKQRSIVDMAAARGAFIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+P+ KL ++ W GLKT YYLRSR+A K T+ Sbjct: 729 IHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAAADAIKFTV 771 >gi|124809244|ref|XP_001348526.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium falciparum 3D7] gi|23497421|gb|AAN36965.1|AE014821_52 ribonucleoside-diphosphate reductase, large subunit [Plasmodium falciparum 3D7] Length = 847 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 296/788 (37%), Positives = 436/788 (55%), Gaps = 52/788 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ +L+ + + P+++ + AR + L +K Sbjct: 87 MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL--------HKNTSDDVAEVA 138 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305 + LY R G A L+ + + DF L++ L ++ Y RDF ++Y G + L Y Sbjct: 139 EALYTYKDVR----GRPASLISKEVYDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN IE PQ MRV++G+ + + +K A+E Y+L+S +F +TPTLFNSGT Sbjct: 195 LLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPR 251 Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL ++ D + GIF L++ A+++K +GG+G +RG ++I GTNG S G+ Sbjct: 252 PQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAV 371 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFMKRV +N WTL P+E L + +G+EFE Y YE + + G+ + + A Sbjct: 372 WVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEE-NMGK----KTVLAQ 426 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL Sbjct: 427 DLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486 Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L +F++ KL + R LD +I+ N + +++AK SN HR IG+G+ Sbjct: 487 SIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQ 546 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G LL PY S A E+ E + + A+ SVELA G Y S++GS QG+ Sbjct: 547 GLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGIL 606 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D A+V ++ WDELK +++ G+RNS +A PTA+ + I G ++S Sbjct: 607 QFDMWN--AKVDNKY-------WDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNES 657 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+ +L R LWDE M L H+GSI I IPDDL Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDL 717 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K+++ T +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777 Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945 YYLR+++AT K T LK DG V+ ST S + C Sbjct: 778 YYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRN 837 Query: 946 SDTECEVC 953 +D +C +C Sbjct: 838 NDEQCLMC 845 >gi|328770641|gb|EGF80682.1| hypothetical protein BATDEDRAFT_16482 [Batrachochytrium dendrobatidis JAM81] Length = 796 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 296/782 (37%), Positives = 436/782 (55%), Gaps = 52/782 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL V V + +Y G++ +L+ ++ L K P+YA + AR Sbjct: 22 INKLCYGLDMNYVDPAEVAQKVVTGVYQGVTTVELDNLAAETTAYLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +E +K MQ LY Y+ S FD + Sbjct: 82 AISNLHKET--------KKQFSSVMQDLY-----EYVNPKNNKHSPMISKTTFDCILKNA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF + + G + L Y L IN E PQ MRVA+G+ + E Sbjct: 129 DRLNSAIIYDRDFNYNFFGFKTLERSYLLRINRKTAERPQHMLMRVAVGIHGDDVEA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 +E YNL+S +F ++PTLFN+GT +PQ+SSCFL T+ DD + GI+ L+ AM++K + Sbjct: 186 VIETYNLMSEKYFTHASPTLFNAGTPNPQMSSCFLLTIEDDSIEGIYSTLKTCAMISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHKIRSSGSYIAGTNGLSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKNTG + R D+ A WIPD+FM+RV N W+LF P E L D++G Sbjct: 306 ADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWSLFCPAEAPGLDDVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF+ YE YER+ +I I A LW +L ETG P++ +KD CN +S QQ++ Sbjct: 366 EFDALYEKYEREGRARKI-----IKAQKLWYAILDSQSETGTPYMLYKDACNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRV 631 G + SNLCTEI SS +E AVCNL S+ L + FD+DK+ T + A Sbjct: 421 GTIKCSNLCTEIVEYSSPDEVAVCNLASLALPNFVIKDTTGAPVFDFDKMIDTTKIATYN 480 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ +I++N + +E+AK+SN HR IGLG+ G + +P+ SPEA ++ + E I Sbjct: 481 LNKIINLNYYPVEQAKRSNMRHRPIGLGVQGLADTFIKMRMPFDSPEAKKLNIQIFEAIY 540 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A++AS ELA+ G Y ++ GS +G+ D + +V D+ W L+ Sbjct: 541 FAALTASCELAKRDGPYETYSGSPMSKGIIQPDMWNV--KVSDQF--------DWPTLRA 590 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 + G+RNS +A PTA+ + I G +++ +P N+Y++ +SG+F +VN L+ +L Sbjct: 591 NIAKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRRVLSGEFQIVNQHLLKDLT 650 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + LW+E+M + + +GSI NI IP LK I+ T +EI +I+ A+ R +IDQ+Q Sbjct: 651 ELGLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQKVIIDMAADRGAFIDQSQ 710 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL-KGVDGKLN 924 SLN++L E + KL ++ W GLKT YYLRSR A +V+K +L +G + K N Sbjct: 711 SLNIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAIKFTVDKQSLTQGAEDKNN 770 Query: 925 AV 926 V Sbjct: 771 VV 772 >gi|260061081|ref|YP_003194161.1| putative ribonucleoside-diphosphate reductase large chain [Robiginitalea biformata HTCC2501] gi|88785213|gb|EAR16382.1| probable ribonucleoside-diphosphate reductase large chain [Robiginitalea biformata HTCC2501] Length = 812 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 289/767 (37%), Positives = 444/767 (57%), Gaps = 37/767 (4%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V + C GL D+ + V + +YDG++ S+L+ + TL P+YAK+ AR Sbjct: 9 VRKLCYGLSDLVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATLTTTHPDYAKLAARIS 68 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 + L +K +K+ M+ LY R G KA L+ + + F+++ D Sbjct: 69 VSNL--------HKNTKKSFSETMKDLYEYVNPR---TGKKAPLVADDV--FEVIQKHAD 115 Query: 285 -----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 + Y RDF ++Y G + L Y L +NG +E PQ MRV++G+ L + + + Sbjct: 116 TLDSMIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHLDDLDAVR-- 173 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSG 398 E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + GI+ L++ A +++ +G Sbjct: 174 -ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYNTLKQTAKISQSAG 232 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHI 457 G+G +R G++I GTNG S G++P L+V NDTA V+QGG KRKG+ YLE WH Sbjct: 233 GIGLSIHNIRATGSYIAGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPWHA 292 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ +FL+L+KN G + R D+ A WI DLFMKRV +A WTL P+E L+ + +E Sbjct: 293 DIFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMCPNECPGLYTTHSEE 352 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 FE Y YE++ K + I A LW K+L ETG P++ +KD N +S Q+++G Sbjct: 353 FEELYLKYEKEG-----KGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLG 407 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + SSNLCTEI ++ +E AVCNL SI L N +FD+ +L + + L+ VID Sbjct: 408 TIRSSNLCTEILEYTAEDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTKNLNRVID 467 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 N + I++A+ SN HR IGLG+ G LL +P+ S EA ++ E E + + A +A Sbjct: 468 RNYYPIKEAENSNMRHRPIGLGVQGLADTFILLRLPFTSDEAKKLNREIFETLYYAAATA 527 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+E+A+E G YSS++GS QG F + G + D+ + R W++L+K +K G Sbjct: 528 SMEMAKEEGPYSSYEGSPISQGQFQHNLWG----IEDK---ELSGRWDWEKLRKSIKKNG 580 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ +L LW+ Sbjct: 581 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSLGLWN 640 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E M +L +GSI +I+ IPD++K+++ T +E+ +I+ + +R +IDQ+QSLNL++ Sbjct: 641 ENMKQELMRANGSIQHIDAIPDNIKELYQTVWELSMKDIIDMSRQRGYFIDQSQSLNLFM 700 Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 + + KL ++ AW GLKT YYLR+++A K TL K+ Sbjct: 701 ENANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTKKKV 747 >gi|68070011|ref|XP_676917.1| ribonucleoside-diphosphate reductase, large subunit, [Plasmodium berghei strain ANKA] gi|56496825|emb|CAH95342.1| ribonucleoside-diphosphate reductase, large subunit, putative [Plasmodium berghei] Length = 847 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 295/788 (37%), Positives = 438/788 (55%), Gaps = 52/788 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ +L+ + + P+++ + AR + L K+T+ ++ Sbjct: 87 MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL------------HKSTNDDI 134 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305 + + G A L+ + + DF + + L ++ Y RDF ++Y G + L Y Sbjct: 135 GKVAEALYTYKDIRGRSASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN IE PQ MRV++G+ + + EK A+E Y+L+S +F +TPTLFNSGT Sbjct: 195 LLRINNKIIERPQHLLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGTPR 251 Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL ++ D + GIF L++ A+++K +GG+G +RG ++I GTNG S G+ Sbjct: 252 PQMSSCFLLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAI 371 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFMKRV +N WTL P+E L + +G EFE Y YE + + G+ + + A Sbjct: 372 WVPDLFMKRVKENKNWTLMCPNECPGLSESWGDEFEKLYTKYEEE-NLGK----KTVLAQ 426 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL Sbjct: 427 DLWFAILQSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486 Query: 604 SINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L +F++ KL + R LD +I+ N + I++A+KSN HR IG+G+ Sbjct: 487 SIALCKFVDREKKEFNFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQ 546 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G LL PY S EA E+ E + + A+ SVELAQ G Y S+KGS QG+ Sbjct: 547 GLADTFMLLRYPYESDEAKELNKRIFETMYYAALEMSVELAQVHGPYESYKGSPASQGIL 606 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D A+V ++ WD LKK++ G+RNS +A PTA+ + I G ++S Sbjct: 607 QFDMWN--AKVDNKY-------WDWDLLKKKISIHGLRNSLLLAPMPTASTSQILGNNES 657 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP+DL Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDL 717 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K+++ T +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777 Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945 YYLR+++AT K T LK +G V+ ST S ++C Sbjct: 778 YYLRTQAATDAIKFTVDTQVAKNAEKLKNAEGATITREVSRETISTESTVTQNACPLRRN 837 Query: 946 SDTECEVC 953 +D C +C Sbjct: 838 NDEPCLMC 845 >gi|307722071|ref|YP_003893211.1| ribonucleoside-diphosphate reductase class Ia subunit alpha [Sulfurimonas autotrophica DSM 16294] gi|306980164|gb|ADN10199.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Sulfurimonas autotrophica DSM 16294] Length = 788 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 302/829 (36%), Positives = 452/829 (54%), Gaps = 118/829 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + +++ A GL +VS + + + DG++ +++ LI Sbjct: 2 ITVIKRNGRTEPLDISKIQKYTSAAVKGLGNVSQSELEVDAQIHFRDGITSKEIQETLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V +R L L +V C +YF + +EG Sbjct: 62 TAVDKIDIDAPNWTFVASRLFLFNLYHQV-----------NGFTGYCKLEKYFEKGEKEG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322 R+L +DL L +K ERD F YLG++ LYDRY + S IE+PQ FM Sbjct: 111 ---RILLGLKEMYDLDELEKHIKPERDLQFNYLGIKTLYDRYLIKDRDSNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA +E +++ A++FYN++S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 AIAMFLAQREENRQEWAIKFYNMISKFEVMLATPTLSNARTPRHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF A +E AML+K+ GG+G DWT VR +G++I G + G IPFLK+ ND A+AV+Q G Sbjct: 228 IFDAYKEMAMLSKFGGGIGWDWTQVRSMGSYIDGHKNAAGGTIPFLKITNDIAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHID+ +FLDL+KN+G++RRR HD+ + W+ D+FMKRV ++ WTLF Sbjct: 288 TRKGAIAVYLEPWHIDINDFLDLKKNSGEERRRAHDLFPSLWLNDMFMKRVEEDGIWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +L ++YG+EF Y E + D IK K+ A LW+K+LT FETG P++ Sbjct: 348 DPYDTRELTNMYGEEFNKRY--LELEQDESIIK--EKVKAKDLWKKILTSYFETGSPFLC 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------SSEE--------- 596 FKD N +P H G++ SSNLCTEI N+ S EE Sbjct: 404 FKDNANRANPNDHYGIIRSSNLCTEIFQNTQPNHYKIKFIFENGESVSYEENEMVTVDSG 463 Query: 597 --------TAVCNLG----------------------SINLLAHFANNQFDYDKLASTIR 626 TA+ +LG SINL N + D D++ + Sbjct: 464 ITKPAKKVTALDSLGGLPIFVVEKEKVDGSTAVCNLASINL--SRVNTKKDIDRI---VP 518 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R LDNVID+N + +EK K++N R+IGLG+MG L + S E + DE Sbjct: 519 TAIRCLDNVIDLNFYPVEKVKRTNMRSRSIGLGVMGEAQMLAEAGTMWGSQEHFDKIDEI 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRL 744 ME + ++A+SAS +LA E+G+Y F+GS W +G+ P D AEV + + S Sbjct: 579 MESVCYNAVSASSDLAAEKGSYPEFEGSKWSRGIMPQDHAN--AEVVNLVDRGGLFASTY 636 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WDEL+ +VK GMRN MA+APT++I+ + G +Q+I+P ++ + + N+SG VV Sbjct: 637 EWDELRAKVKKQGMRNGYLMAVAPTSSISILTGTTQAIEPVFKRKWSEENLSGLIPVV-- 694 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + D + A++++ LI++A+ RQ Sbjct: 695 -----------------------------VPNLSPDTWSYYTPAYDLNQTVLIKAAAIRQ 725 Query: 865 KWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 KWIDQ QSLN++ LD+ SG+ L+ IY AW +GLK+TYYLRS+S V Sbjct: 726 KWIDQGQSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQSPEMV 774 >gi|149279600|ref|ZP_01885729.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp. BAL39] gi|149229636|gb|EDM35026.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp. BAL39] Length = 792 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 295/797 (37%), Positives = 444/797 (55%), Gaps = 51/797 (6%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG + ++ +E+ C G DV+ K++ + +YDG++ S+L+ Sbjct: 3 VIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVI-----EGLYDGVTTSELD 57 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ +L K P+YA + +R + L +K K+ M+ LY +Y Sbjct: 58 NLAAETAASLTTKHPDYALLASRIAVSNL--------HKNTTKSFSKTMEMLY-----KY 104 Query: 260 IEEGV--KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 ++ A L+ + + + + L + + Y+RDF F+Y G + L Y L I G + Sbjct: 105 VDSKTDKSASLIADDVWEVIQENADILDSTIIYDRDFGFDYFGFKTLEKSYLLKIEGQIV 164 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FMRVA+G+ + + A++ YNL+S F +TPTLFN+ T PQ+SSCFL Sbjct: 165 ERPQHLFMRVAVGIHKSDIDS---AIKTYNLMSERWFTHATPTLFNAATPKPQMSSCFLL 221 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ DD + GI+ L++ A +++ +GG+G +R G++I GTNG S G++P LKV ND Sbjct: 222 TMQDDSIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFND 281 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKGA YLE WH DV FLDLRKN G + R D+ A W+ DLFMKR Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADVFSFLDLRKNHGKEELRARDLFYALWVCDLFMKR 341 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+LF P E L D +G EFE YE YE++ + + + A LW +L Sbjct: 342 VEANEDWSLFCPHEAPGLADCFGDEFEALYERYEKEG-----RARKTVKAQELWFAILDS 396 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD N +S QQ++G + SSNLCTEI +S +E AVCNL S+ L Sbjct: 397 QIETGTPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVI 456 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 N +FD+ KL A L+ +ID N + +E+AK SN HR +GLG+ G A L+ + Sbjct: 457 NGEFDHQKLYDVTYQATLNLNKIIDYNYYPVEEAKNSNMRHRPVGLGVQGLADAFILMRL 516 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S A + E E I F A++AS +LA G Y +FKGS QG F D + + Sbjct: 517 PFESDGARLLNKEIFETIYFAAMTASHDLAVVNGPYQTFKGSPLSQGKFQFDLWNVTPD- 575 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + R W+ L+++V G+ NS +A PTA+ + I G ++ +P N+Y + Sbjct: 576 --------SGRWDWESLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 627 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN L+ +L LW AM + +GSI +I IPD +K+++ T +EI Sbjct: 628 RVLSGEFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIK 687 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +I+ A+ R +I Q+QSLNL+++ P+ KL ++ AW GLKT YYLR+++A+ Sbjct: 688 MRSIIDMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQA 747 Query: 912 EKSTLKGVDGKLNAVPV 928 K T++ GK N PV Sbjct: 748 VKFTVENQAGK-NMEPV 763 >gi|317180438|dbj|BAJ58224.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F32] Length = 788 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 316/829 (38%), Positives = 450/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVLDNVI 636 N + AN D K+A +TAV RV+ ++ Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521 Query: 637 -------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 D+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +GVFPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|326502586|dbj|BAJ95356.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 812 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/763 (36%), Positives = 428/763 (56%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYRGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 K+ ++ +Y + R G+ A L+ + + + + L +++ Y+RDF +++ Sbjct: 90 TMKSFSETVKVMYTHFNER---SGLMAPLIADDVYEIIMKNATRLDSEIIYDRDFDYDFF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRV++G+ + E AV+ Y+++S F ++P Sbjct: 147 GFKTLERSYLLKVGGKVVERPQHMLMRVSVGIHKDDIES---AVKTYHMMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L E A ++K +GG+G VR G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLSECASISKSAGGIGVSIHNVRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIYEFLDLRKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A WIPDLFM+RV +N W+LF P E L D +G EF+ Y YER+ +I Sbjct: 324 RARDLFYALWIPDLFMERVQKNEQWSLFCPSEAPGLADCWGDEFQNLYNKYEREGKAKKI 383 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 +SA +LW ++L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 384 -----VSAQSLWFEILKAQIETGTPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIVEFTSP 438 Query: 595 EETAVCNLGSINLL-----------AHFA---------NNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L +H A N FD+DKLA L+ Sbjct: 439 TETAVCNLASIALPRFVREKGVPIESHPAKLVGSIGSKNRYFDFDKLAEITSVVTWNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + IE A++SN HR IG+G+ G LL +P+ SPEA ++ + E I +HA Sbjct: 499 IIDINYYPIETARRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS E+A + G Y ++ G +G+ D ++ + R W ++ + Sbjct: 559 LKASAEIAAKEGPYETYDGCPVSKGILQPDMWNVVP----------SDRWDWPAIRGMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 KVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W + +++ Y DGS+ I IPDDLK I+ T +EI +++ A R +IDQ+QSLN Sbjct: 669 IWSPVLKNNIIYDDGSVQKITEIPDDLKAIYKTVWEIKQKTVVDMAVDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+ + KL ++ W GLKT YYLR+R+A K T+ Sbjct: 729 IHMDQANSGKLTSLHFHTWSKGLKTGMYYLRTRAAADAIKFTV 771 >gi|298207003|ref|YP_003715182.1| probable ribonucleoside-diphosphate reductase large chain [Croceibacter atlanticus HTCC2559] gi|83849637|gb|EAP87505.1| probable ribonucleoside-diphosphate reductase large chain [Croceibacter atlanticus HTCC2559] Length = 840 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 285/759 (37%), Positives = 440/759 (57%), Gaps = 33/759 (4%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V++ C GL ++ + V + +YDG++ SDL+ ++ ++ P+YAK+ AR Sbjct: 22 VKKLCYGLNELVDPVKVAMRVIEGLYDGVTTSDLDNLAAETAASMTVSHPDYAKLAARIS 81 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281 + L ++ K T E+ EY G KA LL + + + L Sbjct: 82 VSNLHKDT---------KKTFSEVMTDLYEYVNP--RTGKKAPLLSDEVYKVIQDNKDRL 130 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 + + Y RD+ ++Y G + L Y L +NG E PQ MRV++G+ L + + A+E Sbjct: 131 DSTIIYNRDYGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSVGIHLDDLDA---AIE 187 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400 Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + GI+ L++ A +++ +GG+ Sbjct: 188 TYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQTAKISQSAGGI 247 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Y+E WH D+ Sbjct: 248 GLSIHNVRATGSYISGTNGTSNGIVPMLQVYNDTARYVDQGGGKRKGSFAIYIEPWHADI 307 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLDL+KN G + R D+ A WIPDLFMKRV ++ WTL P+E +L +++ +EF+ Sbjct: 308 FDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGNWTLMCPNECPNLFNVHSEEFD 367 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y YE E K + I A LW K+L ETG P++ +KD N +S Q+++G + Sbjct: 368 ELYLKYE-----SENKGRKTIKARVLWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 SSNLCTEI +S +E AVCNL SI L N FD+ +L + + L+ VID N Sbjct: 423 RSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGAFDHKELFRITKRVTKNLNKVIDRN 482 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++A+ SN HR +GLG+ G A +L +P+ S EA + E E + F A++AS+ Sbjct: 483 YYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKTLNQEIFETLYFAAVTASM 542 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA E G YSS++GS +G F + G ++DE + R W L+++V G+R Sbjct: 543 ELAIEEGPYSSYEGSPISKGEFQYNLWG----IKDE---ELSGRWDWAGLRQKVLENGVR 595 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L LW+ Sbjct: 596 NSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNLGLWNND 655 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + + + +GSI NI+ IP DLK+++ T +E+ +I+ + R +IDQ+QSLNL+++ Sbjct: 656 LKNAIMRANGSIQNIDGIPQDLKELYKTVYELSMKDIIDMSRHRGYFIDQSQSLNLFMEN 715 Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 + KL ++ AW GLKT YYLR+++A K T++ Sbjct: 716 ANYAKLTSMHFYAWKNGLKTGMYYLRTKAAVDAIKFTVE 754 >gi|225011000|ref|ZP_03701466.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-3C] gi|225004907|gb|EEG42863.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-3C] Length = 827 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 291/774 (37%), Positives = 449/774 (58%), Gaps = 41/774 (5%) Query: 166 VEEACSGLQDVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V + C GL + + +S + +YDG++ S+L+ + T+ P++AK+ AR Sbjct: 22 VRKLCYGLNERVDPVKVSLRVIEGLYDGVTTSELDNLAAEIAATMTTTHPDFAKLAARI- 80 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLL----HESMMDFDL 278 ++ ++K +K+ M+ LY +Y+ G + LL ++++MD + Sbjct: 81 -------SVSNLHKNTKKSFSETMEDLY-----KYVNPRNGKSSPLLSDEVYQAIMD-NA 127 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y RDF ++Y G + L Y L +NG +E PQ MRV++G+ + + Sbjct: 128 ELLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHPTDMDS--- 184 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + GI+ L++ A +++ + Sbjct: 185 AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAKISQSA 244 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G VR G++I GTNG S GV+P LKV NDTA V+QGG KRKG+ Y+E WH Sbjct: 245 GGIGLSIHNVRATGSYISGTNGTSNGVVPMLKVFNDTARYVDQGGGKRKGSFAMYVEPWH 304 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ +FLDL+KN G + R D+ A WIPDLFMKRV NA WTL P+E +L + + + Sbjct: 305 ADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAEWTLMCPNECPNLFNNHSE 364 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F+ Y YE + K + I A LW K+L ETG P++ +KD N +S Q+++ Sbjct: 365 AFDELYLKYESEG-----KGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKNL 419 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SSNLCTEI +S +E AVCNL SI L + FD+ +L + + L+ VI Sbjct: 420 GTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKDGAFDHKELFKVTKRVTKNLNKVI 479 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D N + +++A+ SN HR IGLG+ G A +L +P+ S EA ++ +E E + F A++ Sbjct: 480 DRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNEEIFETLYFAALT 539 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+E A+ G Y S+KGS QG F + G ++DE + R W +L+K VK Sbjct: 540 ASMEEAKADGPYQSYKGSPISQGEFQHNLWG----IKDE---ELSGRWDWAKLRKDVKKN 592 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ +L LW Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVALGLW 652 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 DE + +L +GS+ +I+ IP D+K+++ T +E+ +I+ + +R +IDQ+QSLNL+ Sbjct: 653 DEGLKQELMRANGSVQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNLF 712 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 ++ + KL ++ AW GLKT YYLR+++A K TL K VPV+ Sbjct: 713 MENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTAKK--DVPVS 764 >gi|67528364|ref|XP_661984.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain (Ribonucleotide reductase large subunit) [Aspergillus nidulans FGSC A4] gi|40741107|gb|EAA60297.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain (Ribonucleotide reductase large subunit) [Aspergillus nidulans FGSC A4] gi|259482810|tpe|CBF77645.1| TPA: ribonucleoside-diphosphate reductase large chain (Eurofung) [Aspergillus nidulans FGSC A4] Length = 865 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 291/800 (36%), Positives = 440/800 (55%), Gaps = 66/800 (8%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ DG ++ V C GL + V + + + +Y G++ +L+ Sbjct: 17 LLITDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAE 76 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVY-------KKPQKATHHEMQC 250 ++ + P+YA + AR + L ++ V++ +Y KKP E Sbjct: 77 TAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLYHYVNPKNKKPAPMISKETY- 135 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 E ++ EE L + + Y+RDF + + G + L Y L ++ Sbjct: 136 ---EIVMKHAEE------------------LNSAIVYDRDFNYNFFGFKTLERSYLLRLD 174 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 G E PQ MRVA+G+ + E RA+E YNL+S +F ++PTLFN+GT PQL+S Sbjct: 175 GKIAERPQHLLMRVAVGIHGNDIE---RAIETYNLMSQKYFTHASPTLFNAGTPQPQLAS 231 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL + +D + GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+ Sbjct: 232 CFLVDMKEDSIDGIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLR 291 Query: 430 VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 V N+TA V+QGG KR GA YLE WH DV EFLDLRKN G + R D+ A W PDL Sbjct: 292 VFNNTARYVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDL 351 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV N WTLF P+E L D+YG EF+ YE YE++ RG R I A LW Sbjct: 352 FMKRVEANGDWTLFCPNEAPGLADVYGDEFDALYEQYEKEG-RGR----RTIKAQKLWYA 406 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607 +L ETG+P++ +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L Sbjct: 407 ILEAQTETGNPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALP 466 Query: 608 -LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + ++D+ KL ++ VR L+ +IDIN + + +AKKSN HR I LG+ G A Sbjct: 467 TFVDASRGEYDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADA 526 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L +P+ S EA ++ + E I A++AS LA+E G Y S++GS QG+ D Sbjct: 527 FLALRLPFDSAEAKQLNIQIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGILQYDM- 585 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 T WD LK ++ G+RNS +A PTA+ + I G ++ +P Sbjct: 586 ---------WERTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYT 636 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 N+Y + ++G+F VVN +L+ +L LW + M + + GS+ NI IPDD+K ++ Sbjct: 637 SNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYK 696 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 T +EI ++E A+ R +IDQ+QSLN++L EP+ K+ ++ W MGLKT YYLR+ Sbjct: 697 TVWEISQRRILEMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRT 756 Query: 906 RSAT-----SVEKSTLKGVD 920 +A+ +V++ LK D Sbjct: 757 MAASAPIQFTVDQEQLKVAD 776 >gi|152989805|ref|YP_001355527.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratiruptor sp. SB155-2] gi|151421666|dbj|BAF69170.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitratiruptor sp. SB155-2] Length = 789 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 296/826 (35%), Positives = 450/826 (54%), Gaps = 119/826 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ +G + + +++ + AC GL+ VS + + DG++ +++ LI Sbjct: 2 IRVVKRNGRVEPLDITKIQKYTKAACEGLEGVSQSELEVDAKIQFRDGITTEEIQQTLI- 60 Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 RT ++K PN++ V AR L L Y K T + + Y Sbjct: 61 --RTAVDKIDVDRPNWSFVAARLFLYDL--------YHKVSGFTGYR-------HLREYF 103 Query: 261 EEGVK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQ 318 E+G K R++ +DL L + +K ERD F YLG++ LYDRY L N + IE+PQ Sbjct: 104 EKGEKEGRIIPGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRNNNPIELPQ 163 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FM VAM LA E + + A FY+++S F M +TPTL N+ T QLSSC++ + PD Sbjct: 164 QLFMAVAMFLAQNELDCQSWAKRFYDVISKFEVMVATPTLSNARTTRHQLSSCYIGSTPD 223 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ GIF + +E A+L+KY GG+G DW+ VR +G++I G + G++PFLK+ ND A+AV Sbjct: 224 NIEGIFDSYKEMALLSKYGGGIGWDWSRVRAMGSYIDGHKHAAGGIVPFLKITNDIAIAV 283 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G RKGA+ Y+E WH+D+++F+DL+KN+G++RRR HD+ A WI DLFMKRV ++ Sbjct: 284 DQLGTRKGAIAVYIEPWHMDIKDFIDLKKNSGEERRRAHDLFPALWINDLFMKRVAEDGI 343 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLF P E SDL +++G+EFE Y YE++ D + ++ A LW+ +L FETG Sbjct: 344 WTLFDPYETSDLTEVWGEEFEKRYLEYEQRDD----ILKEQVRAKELWKLILRSYFETGS 399 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------------- 593 P++ FKD N +P H G++ SSNLCTEI N+ Sbjct: 400 PFLCFKDNANKCNPNDHAGIIRSSNLCTEIFQNTEPNYYKIKIKYEDGSVEYYDEEEEIR 459 Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLAS--------------------TIRT 627 + + ++ SIN F + D L + + Sbjct: 460 IDTGIVKKAKKISSIDSINGKKVFIVEKEKVDGLTAVCNLASVNLSKVHTKEDIERVVPI 519 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVID+N + +EK KK+N R+IGLG+MG L I + S E + DE M Sbjct: 520 AIRMLDNVIDLNFYPLEKVKKTNLQTRSIGLGVMGEAQMLAEHKIEWGSDEHFKKIDEIM 579 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--- 744 E IS++AI +S LA E+G Y F+ S W +G+ PID+ A+ +L +R Sbjct: 580 EMISYNAIRSSSNLAVEKGVYPLFENSKWAKGILPIDTANKEAK---KLTPDRGGLFGYI 636 Query: 745 -PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W+EL+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 637 YDWNELREKVKRDGMRNGYLMAIAPTSSISILTGTTQTIEPVYKRKWFEENLSGLIPVV- 695 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + + D + + A+++D LI++A+ R Sbjct: 696 ------------------------------VPNLSPDTWQYYTPAYDLDQRLLIKAAAVR 725 Query: 864 QKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QKWIDQ QS+N++ LD+ SG+ L IY AW +GLK+TYYLRS+S Sbjct: 726 QKWIDQGQSVNIFIRLDKASGRYLHEIYTLAWKLGLKSTYYLRSQS 771 >gi|308184468|ref|YP_003928601.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori SJM180] gi|308060388|gb|ADO02284.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori SJM180] Length = 788 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 316/829 (38%), Positives = 450/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVLDNVI 636 N + AN D K+A +TAV RV+ +I Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521 Query: 637 -------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 D+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|168046427|ref|XP_001775675.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672948|gb|EDQ59478.1| predicted protein [Physcomitrella patens subsp. patens] Length = 813 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/763 (37%), Positives = 433/763 (56%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCMGVYKGVTTSQLDELAAETAAAMTANHPDYAILAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y R G+K+ L+ + + D + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETVKDMYRHVNAR---SGLKSPLIDDDVYDLIIKNAALLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L +NG +E PQ MRV++G+ + ++ Y+ +S F ++P Sbjct: 147 GFKTLERSYLLRVNGKVVERPQHMLMRVSVGIHKDNIDA---VLKTYHTMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL T D + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCTKGDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G+IP L+V NDTA V+QGG KRKGA YLE WH D+ ++LDLRKN G + Sbjct: 264 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV +N W+LF P+E L D +G+EFE Y YE + Sbjct: 324 RARDLFYGLWIPDLFMRRVQENGVWSLFCPNEAPGLADCWGEEFEKLYTRYEVEG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW +L ETG+P+I FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQKLWFAVLEAQIETGNPYILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSP 438 Query: 595 EETAVCNLGSINLL-----------AH---------FANNQFDYDKLASTIRTAVRVLDN 634 +ETAVCNL SI L +H + + FD++KL R L+ Sbjct: 439 DETAVCNLASIALPRFVRERGVPMDSHPTKVIGSNGYESRYFDFEKLGEITSLVTRNLNR 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E A++SN HR IGLG+ G A LL +P+ S EA ++ + E I +HA Sbjct: 499 IIDVNYYPVEAARRSNMRHRPIGLGVQGLADAFILLGMPFDSEEAQKLNRDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + S ELA E G Y ++ G PI S GLL D + +SR WD L++ + Sbjct: 559 LRTSCELAAEEGVYETYDGC-------PI-SKGLLQP--DMWDVKPSSRWDWDALRRMIA 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+N+L Sbjct: 609 KNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTDLG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + + + YH+GSI I+ IP LKKI+ T +EI +++ A+ R +IDQ+QSLN Sbjct: 669 LWTQDLKNQIIYHNGSIQQIDAIPAGLKKIYRTVWEIKQRAIVDMAAARGAFIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++D+P+ KL ++ +W GLKT YYLRSR+A K T+ Sbjct: 729 IHMDQPNFGKLTSLHFYSWTKGLKTGMYYLRSRAAADAIKFTV 771 >gi|91215506|ref|ZP_01252477.1| probable ribonucleoside-diphosphate reductase large chain [Psychroflexus torquis ATCC 700755] gi|91186458|gb|EAS72830.1| probable ribonucleoside-diphosphate reductase large chain [Psychroflexus torquis ATCC 700755] Length = 815 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 282/763 (36%), Positives = 442/763 (57%), Gaps = 41/763 (5%) Query: 166 VEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 + + C GL V V + +YDG++ S+L+ S T+ P+YA++ AR Sbjct: 22 IRKLCYGLNPLVEPAKVAMRVIEGLYDGVTTSELDNLAAEISATMTVSHPDYAQLAARIS 81 Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277 + L + EV+ +Y+ + + + + + + IEE H+ +D Sbjct: 82 VSNLHKNTKKSFSEVMADLYEYVNPRNNKKSPLIADDVY-KVIEE-------HKDELDSR 133 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 ++Y RDF ++Y G + L Y L +NG E PQ MRV++G+ ++ E Sbjct: 134 IIY-------SRDFNYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSLGIHGEDLES-- 184 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396 +E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + GI+ L++ A +++ Sbjct: 185 -VLETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQTARISQS 243 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 +GG+G +R G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Y+E W Sbjct: 244 AGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYVEPW 303 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ FLDL+KN G + R D+ A WIPDLFMKRV +N+ WTL P+E +L++++ Sbjct: 304 HADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENSTWTLMCPNECPNLYNVHS 363 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EF+ Y YE Q ++G + I A LW K+L ETG P++ +KD N +S Q++ Sbjct: 364 EEFDELYLKYE-QENKGR----KTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKN 418 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +G + SSNLCTEI +S +E AVCNL SI L N +F + +L + ++ L+ V Sbjct: 419 LGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGEFQHKELYKITKQIIKNLNKV 478 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + +++A+ SN HR +GLG+ G A +L +P+ S EA ++ E E + F A+ Sbjct: 479 IDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKKLNQEIFETLYFAAV 538 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +S+ELA+ G YSSF+GS +G F + GL + + R W +L+++V Sbjct: 539 ESSMELAKIEGPYSSFEGSPISKGEFQFNLWGLTDN-------DTSGRWNWSKLREKVMK 591 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS MA PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L L Sbjct: 592 HGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVSLGL 651 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 WD+ + + +GS+ I+ IPDD+K+++ T +E+ +I+ + +R +IDQ+QSLNL Sbjct: 652 WDDDLKDAIMRANGSVQGIDIIPDDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNL 711 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 +++ + KL ++ AW GLKT YYLR++SA K TLK Sbjct: 712 FMEGATFAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLK 754 >gi|297447|emb|CAA46232.1| ribonucleotide reductase, large subunit [Schizosaccharomyces pombe] Length = 811 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 284/762 (37%), Positives = 436/762 (57%), Gaps = 37/762 (4%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ +L+ ++ T+ K P+YA + AR Sbjct: 22 VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81 Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 + L ++ V +TV ++ + + P + + +K H+ +D ++Y Sbjct: 82 AVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMK----HKDELDSAIIY 137 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +RDF + + G + L Y L I+G E PQ MRVA+G+ ++ E A+ Sbjct: 138 -------DRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDIEA---AI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F ++PTLFN+GT PQLSSCFL T+ DD + GI+ L+ AM++K +GG Sbjct: 188 ETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAMISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R G++I GTNG S G++P ++V N+TA V+QGG KR GA AYLE WH D Sbjct: 248 IGIYIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V +FL+LRK G++ R M A WIPDLFM+RV +N WT F P+E L D++G EF Sbjct: 308 VMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLADVWGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 YE YE++ +RG R + A +W +L ETG+P++ +KD CN +S Q++VG Sbjct: 368 VALYEKYEKE-NRGR----RSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + SSNLCTEI SS +E AVCNL S+ L + ++++ KL ++ R L+ +ID+ Sbjct: 423 IRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKIIDV 482 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + +A++SN HR +GLG+ G A L +P+ S A ++ + E I A+ AS Sbjct: 483 NYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEAS 542 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 E+AQ G Y S++GS QG+ D + N T W E K+++ G+ Sbjct: 543 CEIAQVEGTYESYEGSPCIQGILQYDMWNV----------NPTDLWDWAEFKEKIAKHGI 592 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L +RDLW+E Sbjct: 593 RNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 M + L DGSI I IP DLK ++ T +EI +I+ A+ R +IDQ+QSLN++L Sbjct: 653 DMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLK 712 Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 +PS K+ ++ W GLKT YYLR+ +A++ K T+ V Sbjct: 713 DPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754 >gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae] gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae] Length = 812 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 299/800 (37%), Positives = 446/800 (55%), Gaps = 41/800 (5%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLE 199 + KL ++ DG + ++ +++ C L D + ++ + +Y G++ +L+ Sbjct: 9 SSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELD 68 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYF 256 S L +YA + AR + L +E V + V++ + E P Sbjct: 69 NLAAEISAGLTCNHADYAILAARIAVSNLHKETRKVFSDVFEALYTHVNKETNLRAP--- 125 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 + E H +++ + L + + Y+RDF + Y G + L Y L ING E Sbjct: 126 --LVSE------FHYNVVKKNADRLNSSIIYDRDFGYNYFGFKTLERSYLLKINGKVAER 177 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ MRVA+G+ ++ + AVE YNLLS +F ++PTLF + T PQLSSCFL T+ Sbjct: 178 PQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTM 234 Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ A Sbjct: 235 TADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVA 294 Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+QGG KR GA YLE WH DV EFLDL+KNTG + R D+ A WIPDLFMKRV Sbjct: 295 RYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVE 354 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N W+L P + LHD++G EFE Y YE++ + R + A +LW ++ Sbjct: 355 ANEDWSLMCPHKCPGLHDVWGDEFEKLYVKYEQEG-----RANRTVKAQSLWFAIIESQV 409 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETG+P++ FKD CN +S QQ+VG + SNLCTEI SS +E AVCNL SI L Sbjct: 410 ETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTPE 469 Query: 615 Q-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + +D+ KL +T R L+ +IDIN + + +AKKSN HR IG+G+ G AL L+ P Sbjct: 470 KTYDFKKLKEVTKTVARNLNKIIDINFYPLPEAKKSNMRHRPIGIGVQGLADALILMRYP 529 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S EA + + E I F A+ AS ELAQ+ G Y +++GS +G+ D + Sbjct: 530 YESEEASLLNQQIFETIYFGALEASCELAQKDGTYETYEGSPVSKGILQYD-------MW 582 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D+ T W LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y + Sbjct: 583 DKTP---TGLWDWKSLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRR 639 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T +EI Sbjct: 640 VLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIESIPQKVRDLYKTVWEISV 699 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + Sbjct: 700 KSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAI 759 Query: 913 KSTLKGVDGKLNAVPVTDPN 932 + T VD K++A+ + N Sbjct: 760 QFT---VDKKMSALKINGQN 776 >gi|260789736|ref|XP_002589901.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae] gi|229275086|gb|EEN45912.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae] Length = 787 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 286/788 (36%), Positives = 450/788 (57%), Gaps = 47/788 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ +++ C GL V + + +Y G++ +L+T Sbjct: 1 MYVLKRDGRQEKVHFDKITSRIQKLCYGLNMDFVDPTKITMKVINGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L +E +KA M+ LY ++ Sbjct: 61 AETAATMTVKHPDYATLAARIAISNLHKET--------KKAFTDVMEDLY-----NWVNP 107 Query: 263 GVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 + ++ + +MD + L + + Y+RDF + Y G++ L Y L I+G E P Sbjct: 108 KTNQHSPMISKKLMDLVTKNADRLNSAIIYDRDFKYTYFGIKTLERSYLLRIDGKVAERP 167 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q MRVA+G+ ++ + A+E YNL+S F ++PTLFN+GT PQLSSCFL T+ Sbjct: 168 QHMLMRVALGIHYEDLDA---AIETYNLMSEKKFTHASPTLFNAGTNKPQLSSCFLLTMK 224 Query: 378 DD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DD + GI+ L++ A+++K +GG+G + +R G+ I GTNG S G++P L+V N+TA Sbjct: 225 DDSIDGIYETLKQCALISKSAGGIGVNIHKIRASGSFIAGTNGTSNGLLPMLRVFNNTAR 284 Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGG KR GA YLE WH D+ EFLD RKNTG + +R D+ A WIPDLFMKRV + Sbjct: 285 YVDQGGNKRPGAFAMYLEPWHADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEE 344 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N WTL P E L D +G+EFE YE YE+ A +G R + A +W ++ E Sbjct: 345 NGEWTLMCPHECPGLEDCWGEEFEKLYEGYEK-AGKGR----RTVKAQQVWYAIIEAQTE 399 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANN 614 TG+P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL SI + + + Sbjct: 400 TGNPYMLYKDACNSKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIAVNMYVKPDG 459 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +D++KL R L+ +ID+N + + +A+ SN HR IG+G+ G L+ P+ Sbjct: 460 TYDFEKLKEVTVVITRNLNKIIDVNYYPVPEAENSNKKHRPIGIGVQGLADCFILMRYPF 519 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I + A+ AS E+A+E G Y +++G +G+F D + Sbjct: 520 ESEEAQHLNKQIFETIYYGAMQASCEIAKELGPYETYEGCPVSKGIFQYDMWNVTP---- 575 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 T W LK++VK G+RNS +A PTA+ A I G ++SI+ N+Y + Sbjct: 576 ------TDLWDWAALKEQVKQHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRV 629 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN L+ +L + LW+E M + + ++GS+ NIE IP+ ++ ++ T +EI Sbjct: 630 LSGEFQVVNHHLMTDLTELGLWNEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWEISQK 689 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT---- 909 +I+ A+ R +IDQ+QSLN+++ EP+ K+ ++ W +GLKT YYLR+R A+ Sbjct: 690 TVIKMAADRGAFIDQSQSLNIHIGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPASNPIQ 749 Query: 910 -SVEKSTL 916 +V+KS L Sbjct: 750 FTVDKSKL 757 >gi|302844064|ref|XP_002953573.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f. nagariensis] gi|300261332|gb|EFJ45546.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f. nagariensis] Length = 824 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 285/763 (37%), Positives = 434/763 (56%), Gaps = 53/763 (6%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S+L+ ++ L P+YA + AR ++ ++KK Sbjct: 41 LVAQKVAGGVYKGVTTSELDELAAETAAALTSTHPDYAILAARI--------AVSNLHKK 92 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ M+ LY R G +A L+ + + + L ++++Y+RDF F+Y Sbjct: 93 TKKSFSETMEALYNYKNPR---TGQEASLIDKEVFQIIIQNAARLNSEIRYDRDFDFDYF 149 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L +NG +E PQ MRVA+G+ + E A++ Y+ +S F ++P Sbjct: 150 GFKTLERSYLLRMNGEVVERPQQMLMRVAVGIHKDDIES---AIQTYHAMSERWFTHASP 206 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFNSGT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 207 TLFNSGTPRPQLSSCFLLCMRDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRATGSYIR 266 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA Y+E WH DV EFLDLRKN G + Sbjct: 267 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYIEPWHADVFEFLDLRKNHGKEEA 326 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV + W+LF P+E DL + +G +FE Y YER+ Sbjct: 327 RARDLFYGLWIPDLFMERVEADKEWSLFCPNEAQDLAECWGADFERLYTQYEREG----- 381 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + + + A LW +L ETG+P++ +KD CN +S QQ++G + SNLCTEI +S Sbjct: 382 RARKVVRAQQLWFAILEAQVETGNPYMLYKDSCNKKSNQQNLGTIKCSNLCTEIIEYTSP 441 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 +E AVCNL SI L N FD++KLA + A R L+ Sbjct: 442 DEIAVCNLASIALPRFVRERGSQPGWESKKLVGSLDAPNRFFDFEKLAEMTQMATRNLNK 501 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + KA+KSN HR IGLG+ G +L +P+ SPEA E+ + E I + A Sbjct: 502 IIDVNYYPHPKAQKSNMRHRPIGLGVQGLADTFIILGMPFDSPEAAELNRQIFEVIYYAA 561 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 +SAS ELA+ G Y +++GS QG+ D G+ SR W L+ R+ Sbjct: 562 LSASCELAERDGTYETYEGSPVSQGILQPDMWGV-------KPTGVGSRCDWPALRDRIA 614 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+YV+ +SG+FTVVN L+++L + Sbjct: 615 RHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMG 674 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + ++L +GS+ +++ IP +LK ++ T +EI L++ A+ R +IDQ+QS N Sbjct: 675 LWSPELKNELVAANGSVADLD-IPVELKALYKTVWEIKQRTLVDMAADRGAYIDQSQSFN 733 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++ +P+ KL ++ AW GLKT YYLR+++A K T+ Sbjct: 734 VFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKFTV 776 >gi|153952334|ref|YP_001397294.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. doylei 269.97] gi|152939780|gb|ABS44521.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 789 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/826 (36%), Positives = 444/826 (53%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY L G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLLKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601 + FKD N +P HVG++ SSNLCTEI N+ E+ V + Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460 Query: 602 LG------SINLLAHFANNQ--------------------------FDYDKLASTIRTAV 629 G I+ L N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQ 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+E+D L+++A+ R KW Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|156408425|ref|XP_001641857.1| predicted protein [Nematostella vectensis] gi|156228997|gb|EDO49794.1| predicted protein [Nematostella vectensis] Length = 810 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 284/766 (37%), Positives = 440/766 (57%), Gaps = 47/766 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL++ V + + +Y G+ ++L+T ++ ++ K P+YA + AR Sbjct: 32 ISKLCYGLKNEFVKPINITMKVISGIYQGVKTTELDTLAAETAASMTTKHPDYAILAARI 91 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ LY Y+ + + L+ + +D + Sbjct: 92 EVSNLHKET--------KKVFSEVMEELY-----NYVNPKNNKHSPLISKETLDIIQKHA 138 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RD+ + Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 139 DRLNSAIIYDRDYQYNYFGFKTLMRSYLLKINGKVAERPQHMLMRVSVGIHGEDIDA--- 195 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNL+S F ++PTLFN+GT PQ+SSCFL T+ DD + GI+G L+ A+++K + Sbjct: 196 AIETYNLMSEKWFTHASPTLFNAGTNRPQMSSCFLLTMSDDSIEGIYGTLRTCALISKNA 255 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V + TA V+QGG KR GA YLE WH Sbjct: 256 GGIGVNVHCIRAAGSYIAGTNGHSNGLVPMLRVYDSTARYVDQGGNKRPGAFAIYLEPWH 315 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV + W+L P++ L D YG+ Sbjct: 316 ADILEFLDLKKNTGKEEQRARDLFYALWIPDLFMKRVEADGMWSLMCPNQCPGLQDCYGE 375 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 +FE YE YE Q K R+I A LW +L ETG P++ +KD CN +S Q+++ Sbjct: 376 KFEKLYEKYESQG-----KYMRQIKAQKLWFAILESQTETGTPYMLYKDACNSKSNQKNL 430 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 G + SNLCTEI S+ +E AVCNL SI L F N +F++ KL + + Sbjct: 431 GTIKCSNLCTEIVEYSAPDEVAVCNLASI-ALNRFVNVDKSPPEFNFQKLFEVTQVVTKN 489 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ +ID+N + + +A+KSN HR IG+G+ G A L+ P+ S +A E+ E I Sbjct: 490 LNKIIDVNYYPVPEARKSNFRHRPIGIGVQGLADAFILMRYPFESQKAQELNKLIFETIY 549 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + A++AS +LA G Y +++GS QG+ D + ++ W+ LKK Sbjct: 550 YGAVTASCDLAATNGPYETYEGSPASQGLLQYDLWNVTP----------SNLWDWEALKK 599 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L Sbjct: 600 KVKEHGLRNSLLIAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQIVNHHLLKDLT 659 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + LW++ M + L ++GSI +I+ IP DLK ++ T +EI LI+ A+ R +IDQ+Q Sbjct: 660 EMGLWNDGMKNQLIANNGSIQDIKEIPADLKALYKTVWEIKQRVLIDMAADRGAFIDQSQ 719 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 S N+++ +P+ KL ++ W GLKT YYLRSR A + + T+ Sbjct: 720 SFNVFIAQPTFSKLTSMHFYGWKKGLKTGMYYLRSRPAVNAIQFTV 765 >gi|157414345|ref|YP_001481601.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni 81116] gi|218561717|ref|YP_002343496.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112359423|emb|CAL34205.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385309|gb|ABV51624.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni 81116] gi|315930489|gb|EFV09541.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 305] gi|315931282|gb|EFV10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 327] Length = 789 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/825 (36%), Positives = 446/825 (54%), Gaps = 111/825 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + EYF + +EG Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFQKGEKEG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322 R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ FM Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNL 602 FKD N +P HVG++ SSNLCTEI N+ E+ V + Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461 Query: 603 G------SINLLAHFANNQ--------------------------FDYDKLASTIRTAVR 630 G I+ L N+ + + + + TA+R Sbjct: 462 GYEKPAKKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME I Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747 SF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWV 639 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + D + + A+E+D L+++A+ R KWI Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728 Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 DQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|255070623|ref|XP_002507393.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299] gi|226522668|gb|ACO68651.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299] Length = 841 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 291/766 (37%), Positives = 433/766 (56%), Gaps = 57/766 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S+L+ ++ ++ K P+YA++ AR + L + L Sbjct: 40 LVAQKVAVGVYKGVTTSELDELAAETAASMTSKHPDYAQLAARIAVSNLHKNTL------ 93 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 K+ M+ +Y R G + LL + + + + +++ Y+RDF ++Y Sbjct: 94 --KSFSETMKVMYEHVNKR---NGKWSPLLADDVYEIIKENADRFDSEIVYDRDFDYDYF 148 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L ++G +E PQ MRVA+G+ K+ EK A++ Y++LS ++P Sbjct: 149 GYKTLERSYLLRVDGKIVERPQHLLMRVAIGIH-KDVEK---AIDTYHMLSERWMTHASP 204 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFNSGT PQLSSCFL + +D + GI+ L+E A ++K +GG+G +R ++I Sbjct: 205 TLFNSGTPRPQLSSCFLIAMKEDSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIR 264 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G+IP L+V NDTA V+QGG KRKGA YLE WH D+ ++LDLRKN G + Sbjct: 265 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEEA 324 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ W DLFMKRV N WTLF P+E L D +G+EFE YE YE E Sbjct: 325 RARDLFYGLWTNDLFMKRVEANGEWTLFCPNEAPGLADCWGEEFEALYEKYE-----AEG 379 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW +L ETG+P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 380 KGKKTVKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIRSSNLCTEIVEYTSP 439 Query: 595 EETAVCNLGSINLLAHF-----------------------ANNQFDYDKLASTIRTAVRV 631 EETAVCNL SI L AN FD+DKLA R R Sbjct: 440 EETAVCNLASIALPRFVIENNPQSPTGRTEAKKLRGSIGAANRYFDHDKLAEITRKVTRN 499 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ +ID+N + +E A++SN HR IGLG+ G LL +P+ SPEA ++ E E I Sbjct: 500 LNRIIDVNYYPVETARRSNMKHRPIGLGVQGLADVFILLGMPFDSPEAKKLNAEIFETIY 559 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A++ S ++A+ G Y S+ GS GV D GL M R W L+ Sbjct: 560 FAALTESNDIAKRDGTYESYPGSPVSNGVLQPDMWGL-------TEMPGGDRHDWTGLRT 612 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++ G+RNS +A PTA+ + I G ++ +P N+Y + +SG+FTVVN L+++L Sbjct: 613 KISEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLT 672 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + LWD ++ ++L ++GS+ +++ IPD+LK+I+ T +EI L++ A+ R +IDQ+Q Sbjct: 673 EMGLWDPSLKNELIANNGSVQSLD-IPDNLKEIYKTVWEIKQRILVDMAADRGAFIDQSQ 731 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 S N+++ + + KL ++ AW GLKT YYLRSR+A K T+ Sbjct: 732 SFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAVKFTV 777 >gi|254779335|ref|YP_003057440.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori B38] gi|254001246|emb|CAX29221.1| Ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter pylori B38] Length = 788 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 316/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENTEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605 FKD N +P H G++ SSNLCTEI N++ EE + + + Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKEL--VTTD 461 Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVLDNVI 636 N + AN D K+A +TAV RV+ +I Sbjct: 462 NNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521 Query: 637 -------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 D+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK+ GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QSLN++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 730 GQSLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|85081938|ref|XP_956818.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa OR74A] gi|30316299|sp|Q9UW15|RIR1_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase large subunit gi|11256439|pir||T51069 ribonucleoside-diphosphate reductase large chain (un-24gene) [imported] - Neurospora crassa gi|9368573|emb|CAB98233.1| ribonucleoside-diphosphate reductase large chain (un-24) [Neurospora crassa] gi|28917896|gb|EAA27582.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa OR74A] Length = 929 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 286/779 (36%), Positives = 439/779 (56%), Gaps = 56/779 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ + L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ V++ +Y P+ H M + + E V + H+ Sbjct: 82 AVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPM-------IAKDVYECV---MRHKDEF 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 D +VY +RDF ++Y G + L Y L ++G E PQ MRVA+G+ + E Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 R +E YNL+S F ++PTLFN+GT PQLSSCFL + +D + GI+ L+ AM+ Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YL Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV EFLDLRKN G + R D+ A WIPDLFMKRV QN WTL P E L D Sbjct: 302 EPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 +YG EFE YE YE++ K + + A LW +L ETG+P++ +KD CN +S Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI S+ +E AVCNL S+ L A + N +D+ KL + VR Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQVVVR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +IDIN + +++A SN HR IG+G+ G A L +P+ S A ++ + E I Sbjct: 477 NLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A++AS +LA+E+G Y++++GS QG+ D + T+ W LK Sbjct: 537 YHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----------TNLWDWTALK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 ADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + LW +AM + + GSI NI+ IP+D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 647 VEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923 QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A +V++ L+ D ++ Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALRATDDRV 765 >gi|5733808|gb|AAD49743.1| ribonucleotide reductase large subunit [Neurospora crassa] Length = 929 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 286/779 (36%), Positives = 439/779 (56%), Gaps = 56/779 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ + L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ V++ +Y P+ H M + + E V + H+ Sbjct: 82 AVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPM-------IAKDVYECV---MRHKDEF 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 D +VY +RDF ++Y G + L Y L ++G E PQ MRVA+G+ + E Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 R +E YNL+S F ++PTLFN+GT PQLSSCFL + +D + GI+ L+ AM+ Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YL Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV EFLDLRKN G + R D+ A WIPDLFMKRV QN WTL P E L D Sbjct: 302 EPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 +YG EFE YE YE++ K + + A LW +L ETG+P++ +KD CN +S Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI S+ +E AVCNL S+ L A + N +D+ KL + VR Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQVVVR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +IDIN + +++A SN HR IG+G+ G A L +P+ S A ++ + E I Sbjct: 477 NLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A++AS +LA+E+G Y++++GS QG+ D + T+ W LK Sbjct: 537 YHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----------TNLWDWTALK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 ADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + LW +AM + + GSI NI+ IP+D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 647 VEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923 QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A +V++ L+ D ++ Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALRATDDRV 765 >gi|327403796|ref|YP_004344634.1| ribonucleoside-diphosphate reductase subunit alpha [Fluviicola taffensis DSM 16823] gi|327319304|gb|AEA43796.1| ribonucleoside-diphosphate reductase, alpha subunit [Fluviicola taffensis DSM 16823] Length = 789 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/823 (36%), Positives = 455/823 (55%), Gaps = 50/823 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLE--TA 201 + ++ DG + ++ + + C GL VS + V + + +YDG++ + L+ A Sbjct: 1 MYVLKRDGRKEAVKFDKITARIIKMCYGLDPLVSPEAVAMKVIEGIYDGVTTTVLDNLAA 60 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + +++T+ P+YA + +R + L +E +K+ M+ LY +Y++ Sbjct: 61 EVAAAKTI--DHPDYALLASRIAVSNLHKET--------KKSFSEVMEDLY-----KYVD 105 Query: 262 --EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 G +A L+ + + + + L + + Y+RDF ++Y G + L Y L G E Sbjct: 106 PKTGQRASLIADDVYEVIQNNSELLDSSIIYDRDFRYDYFGFKTLTRSYLLRTKGEIAER 165 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ MRVA+G+ + +A++ YNL+S F +TPTLFN+GT PQ+SSCFL T+ Sbjct: 166 PQQMLMRVAVGIHKNDL---PQAIKTYNLMSEGWFTHATPTLFNAGTPKPQMSSCFLLTM 222 Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 DD + GI+ L+ A +++ +GG+G +R G++I GTNG S G++P L+V NDTA Sbjct: 223 KDDSIEGIYETLKSCAQISQSAGGIGLAIHNIRATGSYIKGTNGTSNGIVPMLRVFNDTA 282 Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+QGG KRKG+ Y+E WH DV +FLDL+KNTG + R D+ A WIPDLFMKRV Sbjct: 283 RYVDQGGGKRKGSFAMYIEPWHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVE 342 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +N WTL P E L D +G EFE Y YE + K + I A LW K+L Sbjct: 343 ENGDWTLMCPHECPGLSDTFGAEFEALYTQYETEG-----KGRKTIKAQDLWFKVLESQI 397 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-N 613 ETG P++ +KD N +S QQ++GV+ SSNLCTEI ++ +E AVCNL S+ L + + Sbjct: 398 ETGTPYMLYKDAANAKSNQQNLGVIKSSNLCTEIIEYTAPDEIAVCNLASLALPKYVTED 457 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 +FD+DKL A L+ +ID N + +E+A+KSN HR IGLG+ G +L P Sbjct: 458 GKFDHDKLFEVTYQATVNLNRIIDGNFYPVEEARKSNMRHRPIGLGVQGLADTFIMLRYP 517 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S EA + E E I + A++AS +LA G Y ++ GS +GVF D G+ Sbjct: 518 FESEEARALNREIFETIYYAAMTASKDLAMAEGPYETYAGSPVSKGVFQYDMWGVTP--- 574 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 TSR WD LK+ V G+RNS +A PTA+ A I G ++ +P N+Y + Sbjct: 575 -------TSRWEWDLLKEEVAKYGVRNSLLVAPMPTASTAQILGNNECFEPYTSNIYTRR 627 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F +VN L+ +L + LW + M L +GS+ NI IP +K ++ TA+EI Sbjct: 628 VLSGEFIIVNKHLLKDLVKEGLWTKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWEISQ 687 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +IE A+ R +I Q+QSLN++++ + KL ++ W GLKT YYLR+++AT Sbjct: 688 KAIIEQAADRGAYICQSQSLNIFMENANFGKLTSMHFYGWKKGLKTGMYYLRTKAATDAI 747 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT--ECEVC 953 K T VD + P + +C+ D CE+C Sbjct: 748 KFT---VDKAVTEEPAAISAAELEEQQAAIACSLDNPDNCEMC 787 >gi|307746986|gb|ADN90256.1| Ribonucleoside-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni M1] Length = 789 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 303/825 (36%), Positives = 447/825 (54%), Gaps = 111/825 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + EYF + +EG Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFQKGEKEG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322 R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ FM Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNL 602 FKD N +P HVG++ SSNLCTEI N+ E+ V + Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461 Query: 603 G-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAVR 630 G + ++ + N+ + + + + TA+R Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME I Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747 SF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWV 639 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + D + + A+E+D L+++A+ R KWI Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728 Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 DQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|302418985|ref|XP_003007323.1| ribonucleoside-diphosphate reductase large chain [Verticillium albo-atrum VaMs.102] gi|261352974|gb|EEY15402.1| ribonucleoside-diphosphate reductase large chain [Verticillium albo-atrum VaMs.102] Length = 903 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 294/802 (36%), Positives = 446/802 (55%), Gaps = 59/802 (7%) Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y + + PE + + + H+ +D Sbjct: 82 AVSNLHKQTKKQWSSVVSDLYHYVNPKNNRPSPMIAPETY--------EFVMKHKEELDS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF ++Y G + L Y L ++G E PQ MRV++G+ E Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIMRVSVGIWGDNVE-- 184 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 R +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + GI+ L+ AM++K Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G+ P L+V N+TA V+QGG KR GA YLE Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGITPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Y Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE YE YE+ A +G + I A LW +L ETG+P++ +KD CN +S Q+ Sbjct: 364 GDEFEALYEKYEK-AGKGR----KTIKAQKLWYAVLEAQTETGNPFMLYKDHCNRKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI S+ +E AVCNL S+ L A+ + N +D+ KL + VR L Sbjct: 419 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAYVDYNNGVYDFKKLHQVTQVVVRNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + + +A+ SN HR IGLG+ G A L +P+ SPEA E+ + E I Sbjct: 479 NRIIDVNHYPVIEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEAKELNKQIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A++ S +LAQE G YS+++GS QG+ D + T W +LK + Sbjct: 539 AALTMSCKLAQEEGPYSTYEGSPVSQGILQYDMWNV----------KPTDLWDWADLKSQ 588 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 589 IKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW ++M + + +GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QS Sbjct: 649 MGLWSDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWEISQRTVVQMAADRGAFIDQSQS 708 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD---GKL 923 LN+++ +P+ K+ ++ W +GLKT YYLR+++A +V+K LK D GK Sbjct: 709 LNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDKEALKVADTNVGKE 768 Query: 924 NAV----PVTDPNSSTHSLGIP 941 ++ P+ NSS ++ P Sbjct: 769 RSLKKRSPMPSYNSSAAAVPRP 790 >gi|332876815|ref|ZP_08444572.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685241|gb|EGJ58081.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 777 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 272/739 (36%), Positives = 432/739 (58%), Gaps = 29/739 (3%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + + + +YD ++ ++L+ ++ P+++ + AR + L + L + K Sbjct: 39 IAKKVIQGIYDNITTTELDNLAAETAAAQTTIHPDFSVLAARIAVSNLHKNTLKSFSKTA 98 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 Q +E + I E + +++ ++ + D + + Y+RD+ F+Y G + Sbjct: 99 Q--LLYEYTDPITQTHAPLISEEI-YKIIRKNADELD-----SSVIYDRDYNFDYFGFKT 150 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L Y + NG E PQ FMRVA+G+ E + A+E YNL+S F+ +TPTLFN Sbjct: 151 LERSYLIRTNGKVTERPQHLFMRVALGIY---KEDIQAAIETYNLMSEKWFIHATPTLFN 207 Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +GT PQ+SSCFL ++ +D + GIF L+ A++++ +GG+G +R G++I GT G Sbjct: 208 AGTPKPQMSSCFLLSMTEDSIAGIFDTLKRCALISQSAGGIGVSIHNIRSTGSYIKGTGG 267 Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S G+IP L+V NDTA V+QGG KRKGA+ Y+E WH+D+ +F+D+RKN G + R D Sbjct: 268 ISNGIIPMLRVFNDTARYVDQGGGKRKGAIAVYIEPWHLDIFDFIDIRKNHGKEEMRARD 327 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + A WIPDLFM+RV + W+LF P+E L+++YG++F Y YE + K + Sbjct: 328 LFPALWIPDLFMQRVEADQMWSLFDPNEAQGLYEVYGEKFNELYTTYENEG-----KFRK 382 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 +I A LW +L ETG P++ +KD N +S Q+++G + SSNLCTEI ++++E A Sbjct: 383 QIKARELWTAILEAQIETGTPYMCYKDAVNEKSNQKNIGTIRSSNLCTEIMEYTNADEVA 442 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL S+ L + ++ FD+ KL + R L+ +ID N + I + K SN HR IGL Sbjct: 443 VCNLASLALPRYVSSGGFDFQKLYEVTKIVTRNLNKIIDGNYYPIPETKTSNDRHRPIGL 502 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G LL +P+ SPEA + + E I F ++ AS++LA+E+GAYSSF GS + Sbjct: 503 GVQGLADVFLLLRLPFESPEARRLNKDIFETIYFASMEASMDLAKEQGAYSSFAGSPLSE 562 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G F D ++ + R W++L++ V T G+RNS +A PTA+ + I G Sbjct: 563 GKFQFDLWQVVP----------SDRWDWEKLRQEVMTHGVRNSLLLAPMPTASTSQILGN 612 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++ +P N+Y + +SG+F VVN FL+ +L + LW+ M + L +GS+ NI IP Sbjct: 613 NECFEPYTSNIYNRRVLSGEFVVVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIP 672 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 +LK+++ T +EI +I+ A+ R +I Q+QSLNL++ EP+ KL ++ AW GLK Sbjct: 673 TELKELYKTVWEIKQKTIIDMAAERGAFICQSQSLNLFMAEPNLAKLTSMHFHAWKSGLK 732 Query: 899 T-TYYLRSRSATSVEKSTL 916 T YYLR+++A K T+ Sbjct: 733 TGMYYLRTKAAVDAIKFTV 751 >gi|121613048|ref|YP_999744.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] gi|167004719|ref|ZP_02270477.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] gi|87249021|gb|EAQ71983.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 789 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 306/825 (37%), Positives = 448/825 (54%), Gaps = 111/825 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + EYF + +EG Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFQKGEKEG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322 R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ FM Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------SEETAVC--- 600 FKD N +P HVG++ SSNLCTEI N+ EE V Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDG 461 Query: 601 ----------NLGSIN-----LLAHFANNQ---------------FDYDKLASTIRTAVR 630 L SI+ ++ + N+ + + + + TA+R Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME I Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747 SF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWV 639 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + D + + A+E+D L+++A+ R KWI Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728 Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 DQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|284925327|gb|ADC27679.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni IA3902] Length = 789 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 302/826 (36%), Positives = 446/826 (53%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601 + FKD N +P HVG++ SSNLCTEI N+ E+ V + Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460 Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629 G + ++ + N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+E+D L+++A+ R KW Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|212528622|ref|XP_002144468.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium marneffei ATCC 18224] gi|210073866|gb|EEA27953.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium marneffei ATCC 18224] Length = 872 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 284/757 (37%), Positives = 432/757 (57%), Gaps = 43/757 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAVLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +K+ +K ++ LY Y+ + A ++ M + + + Sbjct: 82 AVSNL--------HKQTKKQFSAVIEDLY-----HYVNPKNNKAAPMISGEMYETVMKHA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + EK Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGENIEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNL+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ AM++K + Sbjct: 186 AIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIEGIYDTLKTCAMISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A W PDLFM+RV N WTLF P+E S L D+YG+ Sbjct: 306 SDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFCPNEASGLADVYGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF+ YE YER+ RG R + A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFDALYEKYEREG-RGR----RTVKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI + +E AVCNL S+ L A ++D+ KL + VR L+ Sbjct: 421 GTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDFGKLHEVTQVLVRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + + +AKKSN HR I +G+ G A L +P+ SPEA ++ + E I A Sbjct: 481 IIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYHGA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS+ELA+E G Y +++GS QG+ D T WD LK ++ Sbjct: 541 LTASIELAKEHGTYETYEGSPVSQGILQYDM----------WERTPTDLWDWDSLKAQIS 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 QHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 +++ EP+ K+ ++ W MGLKT YYLR+ +A++ Sbjct: 711 IHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASA 747 >gi|283953643|ref|ZP_06371174.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794684|gb|EFC33422.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 414] Length = 789 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/825 (36%), Positives = 448/825 (54%), Gaps = 111/825 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVTKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YK+ + EYF + +EG Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKRVNGMNRYNH---LREYFQKGEKEG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNSQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE ++L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMSLLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDIGDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEKYEKDESITKEI-----VEAKDLWKKILLNYFETGLPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------------------- 594 FKD N +P HVG++ SSNLCTEI N+ Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDEVHFDEDQKVMIDG 461 Query: 595 --EETA--VCNLGSIN-----LLAHFANNQ---------------FDYDKLASTIRTAVR 630 E+ A + L SIN ++ + N+ + + + + TA+R Sbjct: 462 GYEKPAKKISTLDSINGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME I Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAETKIHWGSDEHLNKIDEIMEQI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747 SF AI+AS LA E+G+Y FKGS W +G+FPID A+ +R+ L S W Sbjct: 582 SFEAINASSNLALEKGSYEDFKGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWA 639 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + D + + A+E+D L+++A+ R KWI Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728 Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 DQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|283956202|ref|ZP_06373687.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792356|gb|EFC31140.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 789 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 302/826 (36%), Positives = 446/826 (53%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601 + FKD N +P HVG++ SSNLCTEI N+ E+ V + Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460 Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629 G + ++ + N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQ 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+E+D L+++A+ R KW Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|86153989|ref|ZP_01072191.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842527|gb|EAQ59740.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 789 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/826 (36%), Positives = 445/826 (53%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------SEETAVCNL 602 + FKD N +P HVG++ SSNLCTEI N+ EE V Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAID 460 Query: 603 GS-------INLLAHFANNQ--------------------------FDYDKLASTIRTAV 629 G I+ L + N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDNIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+E+D L+++A+ R KW Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|156101822|ref|XP_001616604.1| ribonucleoside-diphosphate reductase large chain [Plasmodium vivax SaI-1] gi|148805478|gb|EDL46877.1| ribonucleoside-diphosphate reductase large chain, putative [Plasmodium vivax] Length = 848 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 290/790 (36%), Positives = 438/790 (55%), Gaps = 55/790 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ +L+ + + P+++ + AR + L +K Sbjct: 87 MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL--------HKNTSDDIGEVA 138 Query: 249 QCLYPEYFCRYIE-EGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDR 304 + LY +Y + G A L+ + + +F + + L ++ Y RDF ++Y G + L Sbjct: 139 EALY-----KYTDVRGRPASLISKEVYEFMIEHKDRLNKEIDYTRDFNYDYFGFKTLERS 193 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 Y L ING IE PQ MRV++G+ + + EK A+E Y+L+S +F +TPTLFNSGT Sbjct: 194 YLLRINGKIIERPQHLLMRVSIGIHIGDLEK---ALETYHLMSQKYFTHATPTLFNSGTP 250 Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQ+SSCFL + D + GIF L++ A+++K +GG+G +RG ++I GTNG S G Sbjct: 251 RPQMSSCFLLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNG 310 Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 ++P L+V NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A Sbjct: 311 LVPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYA 370 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 W+PDLFMKRV +N WTL P+E L + +G+EFE Y YE + + G+ + + A Sbjct: 371 VWVPDLFMKRVKENKNWTLMCPNECPGLSESWGEEFEKLYTKYEEE-NMGK----KTVLA 425 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW +L ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL Sbjct: 426 QDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNL 485 Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 SI L +F++ KL + R LD +I+ N + +E+AK+SN HR IG+G+ Sbjct: 486 ASIALCKFVDVEKREFNFKKLYEITKIITRNLDQIIERNYYPVEEAKRSNKRHRPIGIGV 545 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL PY S A E+ E + + A+ S+ELAQ G Y +++GS QG+ Sbjct: 546 QGLADTFMLLRYPYESDSAKELNKRIFETMYYGALEMSMELAQLYGPYETYQGSPASQGI 605 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D + + + WDELK ++K G+RNS +A PTA+ + I G ++ Sbjct: 606 LQFDMWNVKVDKK---------YWDWDELKAKIKKHGLRNSLLLAPMPTASTSQILGNNE 656 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S +P N+Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP D Sbjct: 657 SFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPAD 716 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK+++ T +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT Sbjct: 717 LKELYKTVWEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTG 776 Query: 900 TYYLRSRSAT-----SVEKSTLKGVDGKLNAVPV-----------TDPNSSTHSLGIPSS 943 YYLR+++AT +V+ K NA PV + ++ T ++ P Sbjct: 777 AYYLRTQAATDAIKFTVDTQVAKNAAKMKNAEPVAITREVSRETISTDSTVTQNVVCPLR 836 Query: 944 CTSDTECEVC 953 +D +C +C Sbjct: 837 RNNDDQCLMC 846 >gi|57236936|ref|YP_178051.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni RM1221] gi|148926840|ref|ZP_01810519.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8486] gi|57165740|gb|AAW34519.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni RM1221] gi|145844565|gb|EDK21672.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8486] gi|315057465|gb|ADT71794.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Campylobacter jejuni subsp. jejuni S3] Length = 789 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/826 (36%), Positives = 447/826 (54%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------SEETAVC-- 600 + FKD N +P HVG++ SSNLCTEI N+ EE V Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAID 460 Query: 601 -----------NLGSIN-----LLAHFANNQ---------------FDYDKLASTIRTAV 629 L SI+ ++ + N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+E+D L+++A+ R KW Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|331235025|ref|XP_003330173.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309163|gb|EFP85754.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 805 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 284/750 (37%), Positives = 428/750 (57%), Gaps = 43/750 (5%) Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + + P+YA + AR + L +E +K ++ LY + I + + Sbjct: 1 MTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLY--TYVNPINGRPSSMI 50 Query: 269 LHES--MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 E+ + + L + + Y+RDF + Y G + L Y L I G E PQ MRVA+ Sbjct: 51 SQETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIKGKVAERPQHMLMRVAV 110 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFG 385 G+ + EK A+ YNL+S +F ++PTLFN+GT HPQLSSCFL + D + GI+ Sbjct: 111 GIHGMDVEK---AIRTYNLMSEKYFTHASPTLFNAGTPHPQLSSCFLVASKSDSIDGIYD 167 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KR 444 L+ AM++K +GG+G +R G++I GTNG S G++P L+V N+TA V+QGG KR Sbjct: 168 TLKTCAMISKSAGGIGLHINNIRATGSYISGTNGYSNGIVPMLRVFNNTARYVDQGGNKR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 GA YLE WH DV ++LDLRKN G + R D+ A WIPDLFM RV +N W LF P Sbjct: 228 PGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMSRVEKNQDWPLFCP 287 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 E L D+YG+EFE + YE+ E + + + A LW +L ETG+P++ +K Sbjct: 288 AEAPGLADVYGEEFEALFAKYEK-----ENRAKKTVKAQKLWYAILEAQTETGNPFMLYK 342 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 D N +S Q+++G + SSNLCTEI S+ +E AVCNL SI L + + ++D++KL Sbjct: 343 DAANKKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIVDGKYDFNKLHEV 402 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + L+ +ID+N + + +AKKSN HR IG+G+ G A +L +P+ SPEA ++ Sbjct: 403 TKEVTYNLNKIIDVNYYPVPEAKKSNMRHRPIGIGVQGLADAFQILKLPFESPEAKKLNT 462 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E + ++ AS ELA + G Y +F GS QG+ D + + S L Sbjct: 463 QIFETLYHASLEASNELAIKEGPYETFPGSPASQGILQFDMWNV-----------KPSDL 511 Query: 745 -PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 WD LK++VKT G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN Sbjct: 512 WEWDSLKEKVKTTGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVN 571 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L+ EL + LWD+ M + + H GSI NI IP ++K ++ T +EI +++ A+ R Sbjct: 572 PWLLKELVEMGLWDDEMKNRIIAHQGSIQNIPNIPTEMKAVYKTVWEISQKIILDMAADR 631 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922 +IDQ+QSLN++L P+ +L ++ AW GLKT YYLR+R+A + + T VD K Sbjct: 632 GAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFT---VDKK 688 Query: 923 LN-----AVPVTDPNSSTHSLGIPSSCTSD 947 L A SS+ +L +PSS S+ Sbjct: 689 LQDEAKAANKAATLVSSSATLLVPSSAPSN 718 >gi|39978231|ref|XP_370503.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15] gi|145013418|gb|EDJ98059.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15] Length = 909 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 284/756 (37%), Positives = 434/756 (57%), Gaps = 45/756 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDPVAITQKVISGVYGGVTTIQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L K T + + + F Y+ + G + ++ + D + + Sbjct: 82 AVSNL------------HKQTKKQFSSVVSDLF-HYVNPKNGKLSPMIAQDTYDCVMRHK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF ++Y G + L Y L +NG +E PQ MRVA+G+ E R Sbjct: 129 EDLDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNIE---R 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + GI+ L+ AM++K + Sbjct: 186 VIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDTLKTCAMISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D YG+ Sbjct: 306 ADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCYGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE QA +G + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFEALYEKYE-QAGKGR----KTIKAQKLWYSILEAQTETGNPFMLYKDHCNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI S+ +E AVCNL S+ L + ++D++KL + VR L+ Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYHKGEYDFEKLHEVTQVVVRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +I++N + +++A+ SN HR IGLG+ G A L +P+ SPEA ++ + E I A Sbjct: 481 IIEVNYYPVQEARNSNMRHRPIGLGVQGLADAFLALRLPFESPEARDLNKKIFETIYHAA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRV 753 ++AS +LA+E+G YS+++GS QG+ D + + S L WD LK + Sbjct: 541 LTASCKLAEEQGPYSTYEGSPVSQGILQYDMWNV-----------KPSDLWDWDALKANI 589 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L + Sbjct: 590 KQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVEL 649 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW + M + + GSI NI IP+D KK++ T +EI +++ A+ R +IDQ+QSL Sbjct: 650 GLWSDDMKNRIIAEGGSIQNIASIPEDTKKLYKTVWEISQRTVVQMAADRGAFIDQSQSL 709 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 N+++ +P+ K+ ++ W +GLKT YYLR+++A Sbjct: 710 NIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAA 745 >gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia] gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia] Length = 812 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 299/819 (36%), Positives = 453/819 (55%), Gaps = 51/819 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L D + ++ + +Y G++ +L+ Sbjct: 11 KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 + L P+YA + AR + L +E V +Y K T+ ++ L E Sbjct: 71 AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVP-LVSE 129 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 + H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ ++ + AVE YNLLS +F ++PTLF + T PQLSSCFL Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232 Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFMKR Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+L P + LH+++G EFE YE YE++ + R + A +LW ++ Sbjct: 353 VEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG+P++ FKD CN +S QQ+VG + SNLCTEI SS +E AVCNL SI L Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVT 467 Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +D+ KL + + L+ +IDIN + + +A+KSN HR +G+G+ GF AL L+ Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 PY S EA + + E I + A+ AS ELAQ GAY +++GS +G+ D Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGAYETYEGSPVSKGILQYD------- 580 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + D++ T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y Sbjct: 581 MWDKVP---TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T +EI Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEI 697 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 + T V+ K AV + N + G P D E Sbjct: 758 AIQFT---VNKKQGAVSMNGQNGTAE--GSPQKYEEDRE 791 >gi|86150529|ref|ZP_01068753.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152387|ref|ZP_01070597.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|205355764|ref|ZP_03222534.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8421] gi|315123636|ref|YP_004065640.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85838981|gb|EAQ56246.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840684|gb|EAQ57936.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|205346541|gb|EDZ33174.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8421] gi|315017358|gb|ADT65451.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 789 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 302/826 (36%), Positives = 447/826 (54%), Gaps = 113/826 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + + Y E+G Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L + +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L FETG P+ Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------------------SSEETAVCN 601 + FKD N +P HVG++ SSNLCTEI N+ E+ V + Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460 Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629 G + ++ + N+ + + + + TA+ Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746 ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L S W Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+E+D L+++A+ R KW Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|308501413|ref|XP_003112891.1| CRE-RNR-1 protein [Caenorhabditis remanei] gi|308265192|gb|EFP09145.1| CRE-RNR-1 protein [Caenorhabditis remanei] Length = 786 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 285/755 (37%), Positives = 436/755 (57%), Gaps = 42/755 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ ++ ++ + P YA + AR + L +KK K M Sbjct: 53 LYKGVTTVELDNLAAETAASMTTQHPEYALLAARIAVSNL--------HKKTNKVFSEVM 104 Query: 249 QCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + L+ E+ + G A ++ + ++++ + L + + Y+RD+++ Y G + L Y Sbjct: 105 KTLH-EF--HHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSY 161 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN +E PQ MRV++G+ E A+E YNL+S + ++PTLFNSGT Sbjct: 162 LLKINKEIVERPQQMLMRVSIGI---HGEDIAAAIETYNLMSERYMTHASPTLFNSGTCR 218 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL T+ +D + GI+ L++ A+++K +GG+G + +R G+ I GTNG S G+ Sbjct: 219 PQMSSCFLLTMSEDSILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGL 278 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 IP L+V N+TA V+QGG KR GA YLE WH DV EF+ LRKNTG + R D+ A Sbjct: 279 IPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADVFEFVSLRKNTGPEEERARDLFLAL 338 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV ++ W+L P E L D +G+EFE Y YE E +V + + A Sbjct: 339 WIPDLFMKRVEKDQNWSLMCPCECPGLDDCWGEEFEALYAKYE-----AEGRVRKTVKAR 393 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +++ ETG P+IT+KD N +S QQ++G + SNLCTEI S+ +E AVCNL Sbjct: 394 KLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIMEYSAPDEIAVCNLA 453 Query: 604 SINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 SI L + +FD+ KLA + + L+ +ID+N + +E+A+ SN HR IGLG+ G Sbjct: 454 SIALNRYVTPEKKFDFKKLAEVTKVITKNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQG 513 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L+ P+ S +A ++ E I + A+ AS ELA+ G YS+++GS +G Sbjct: 514 LADCFMLMRYPFTSKQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQ 573 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D G+ T + W L+K++ T G+RNS MA PTA+ A I G ++SI Sbjct: 574 FDMWGVTP----------TDQCDWAALRKKIATHGIRNSLLMAPMPTASTAQILGNNESI 623 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y + +SGDF +VN ++ +L +R LW + M + L ++GSI NI IP D+K Sbjct: 624 EPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPEIPADIK 683 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 +++ T +EI +IE A+ R +IDQ+QSLN+++ +PS + ++ W GLKT Y Sbjct: 684 ELYLTVWEISQKEIIEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKQGLKTGMY 743 Query: 902 YLRSRSAT-----SVEKSTLKG-VDGKLNAVPVTD 930 YLR++ A +V+K LK VD K+ A+ D Sbjct: 744 YLRTKPAVNAVQFTVDKGALKAKVDPKVAALQQQD 778 >gi|242765906|ref|XP_002341068.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces stipitatus ATCC 10500] gi|218724264|gb|EED23681.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces stipitatus ATCC 10500] Length = 873 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/759 (37%), Positives = 430/759 (56%), Gaps = 47/759 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAVLAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V+ +Y + + PE + + + H ++ Sbjct: 82 AVSNLHKQTKKQFSAVIEDLYHYVNPKNNKAAPMISPEMY--------ETVMKHADELNS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF ++Y G + L Y L ING E PQ MRVA+G+ + EK Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGENIEK- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNL+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ AM++K Sbjct: 186 --AIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIEGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 244 SAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A W PDLFM+RV N WTLF P+E L D+Y Sbjct: 304 WHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFCPNEAPGLADVY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ YE YE++ RG R + A LW +L ETG+P++ +KD CN +S Q+ Sbjct: 364 GEEFDALYEKYEKEG-RGR----RTVKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI + +E AVCNL S+ L A ++D+ KL + VR L Sbjct: 419 NLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDFGKLHEVTQVLVRNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +IDIN + + +AKKSN HR I +G+ G A L +P+ SPEA ++ + E I Sbjct: 479 NKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A++AS+ELA+E G Y +++GS QG+ D + D T WD LK + Sbjct: 539 GALTASIELAKEYGTYETYEGSPVSQGILQYD-------MWDRTP---TDLWDWDALKAQ 588 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 589 IREHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVD 648 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QS Sbjct: 649 LGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAFIDQSQS 708 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 LN+++ EP+ K+ ++ W MGLKT YYLR+ +A++ Sbjct: 709 LNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASA 747 >gi|4151066|emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum] Length = 808 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/800 (36%), Positives = 440/800 (55%), Gaps = 57/800 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYACLAARIAVSNL--------HKT 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 P+K+ ++ +Y R G+KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 PKKSFSETIKDMYYHVSER---SGLKAPLVSDEVYEIIMKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I G +E PQ MRV++G+ + E ++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKIQGKVVERPQHMLMRVSVGIHKDDIES---VIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + +D + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLICMKEDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YL+ WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLDPWHADIFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P+E L D +G++FE Y NYE++ Sbjct: 324 RARDLFYALWVPDLFMQRVQSNGQWSLFCPNEAPGLADCWGEDFEKLYINYEKEG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++L ETG P++ +KD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L + N FD+DKLA L+ Sbjct: 439 AETAVCNLASIALPRYVREKGVPSESQPSKLVGSRGSKNRYFDFDKLAEVTALVTTNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E AK+SN HR IG+G+ G LL + + S EA ++ + E I +HA Sbjct: 499 IIDVNYYPVETAKRSNLRHRPIGIGVQGLADTFMLLGMAFDSREAQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA + G Y ++ GS +G+ D G+ + + W L++ + Sbjct: 559 LKASSELAAKEGPYETYAGSPVSKGIIQPDMWGVTP----------SDKWDWVALREMIT 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ +L + Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLYDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW A+ + + Y DGS+ I IPD+LK+I+ +EI L++ A R +IDQ+QSLN Sbjct: 669 LWSPALKNRIIYEDGSVQKIPEIPDELKEIYKNVWEIKQRTLVDMAVDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 +++D+P+ KL ++ W GLKT YYLRSR+A K T+ L P T + Sbjct: 729 IHMDQPNFGKLTSLHFHTWSRGLKTGMYYLRSRAAADAIKFTVD--TAMLKEKPKTAVDD 786 Query: 934 STHSLGIPSSCTSDTECEVC 953 T + S T+ +C C Sbjct: 787 DTKMAQMVCSLTNREDCLSC 806 >gi|196012349|ref|XP_002116037.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens] gi|190581360|gb|EDV21437.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens] Length = 780 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/766 (37%), Positives = 435/766 (56%), Gaps = 50/766 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V + C L + V + + +Y+G++ +L+T + ++ P+YA + AR Sbjct: 22 VSKLCYNLNNDHVDPAAITMKVIAGIYNGVTTVELDTLAAEIAASMTTNHPDYALLAARI 81 Query: 224 LLEKLRREVLTTV---------YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L +E T Y P+ H M ++ HE ++ Sbjct: 82 AVSNLHKETKKTFSVVMDELYNYVNPKNGKHSPMI----------------SKETHE-II 124 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 L + + Y+RD+ + + G + L Y L I+ E PQ MRV++G+ ++ + Sbjct: 125 TKHCERLNSAIIYDRDYNYNFFGFKTLERSYLLKIDKKVAERPQHMLMRVSVGIHGEDID 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 A+E YNL+S F ++PTLFN+GT PQLSSCFL T+ DD + GI+ L++ A++ Sbjct: 185 G---AIETYNLMSERWFTHASPTLFNAGTCRPQLSSCFLLTMSDDSIEGIYDTLKQCALI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YL Sbjct: 242 SKSAGGIGLSVHCIRSSGSYIAGTNGHSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH D+ +FLDL+KNTG + +R D+ A W+PDLFMKRV +N W+L P++ LHD Sbjct: 302 EPWHPDIFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENGVWSLMCPNDCPGLHD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG+EFE Y YE D G K R++ A LW +L ETG P++ +KD CN +S Sbjct: 362 TYGEEFEKLYTEYE---DAG--KFIRQVRAQKLWFAILEAQVETGTPYMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRV 631 Q+++G + SSNLCTEI +S +E AVCNL SI L + FD+ KLA + R Sbjct: 417 QKNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPRFVRPDKTFDFHKLAEVTKVITRN 476 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ +IDIN + + +A+KSN HR IG+G+ G A L+ P+ PEA ++ + E I Sbjct: 477 LNKIIDINFYPVPEAEKSNKRHRPIGIGVQGLADAFILMRFPFDGPEARDLNIKIFESIY 536 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + A+ AS ELA+E G Y +++GS QG D L E + T W+ LK+ Sbjct: 537 YGALQASCELAKEVGPYETYEGSPASQGQLQFD----LWEKQP------TDLWNWNSLKE 586 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +K G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F VVN L+ +L Sbjct: 587 DIKKYGLRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQHLLKDLT 646 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +W++ M ++L ++GSI I IPDD+K ++ T +EI LI+ A+ R +IDQ+Q Sbjct: 647 DMGVWNDMMKNELIANNGSIQKINNIPDDIKALYKTVWEISQRTLIDMAADRGAYIDQSQ 706 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 S N+++ EP+ KL ++ AW GLKT YYLR++ A S + T+ Sbjct: 707 SFNVHIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAASAIQFTV 752 >gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex] Length = 798 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 295/785 (37%), Positives = 439/785 (55%), Gaps = 51/785 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + +Y G++ +L+ ++ T+ K P+YA + AR Sbjct: 22 IQKLCYGLNSDFVDPTAITMKVINGLYPGVTTVELDNLAAETAATMTTKHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+ +Y K T P G+ + H ++ Sbjct: 82 AVSNLHKETKKVFSEVIDDLYNMKNKITKK------PTPMISDFHHGIITK--HSDKLNS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 ++Y +RDF F Y G + L Y L I+G +E PQ MRV++G+ ++ + Sbjct: 134 AIIY-------DRDFNFNYFGFKTLEKSYLLKIDGKPVERPQHLMMRVSVGIHGEDIDA- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNLLS F ++PTLF + T PQLSSCFL T+ DD + GI+ L++ A+++K Sbjct: 186 --AIETYNLLSEKWFTHASPTLFYAATPRPQLSSCFLLTMKDDSIDGIYETLKQCAIISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 244 SAGGIGLNVHCIRATGSYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV +FLDL+KNTG + R D+ A WIPDLFM+RV + W+L P E L D + Sbjct: 304 WHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWSLMCPHECPGLADTW 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE Y YE RK+ A LW ++ ETG P+I +KD CN +S QQ Sbjct: 364 GEEFEALYTKYEESG-----MYRRKVKAQQLWFAVIESQIETGTPYILYKDACNRKSNQQ 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLD 633 ++G + SNLCTEI SS EE AVCNLGSI L ++ FD KL + R L+ Sbjct: 419 NLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKPDKTFDIPKLKEVTKVLTRNLN 478 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +I+IN + + +AK+SN HR IG+G+ G A L+ P+ S EA + E I + Sbjct: 479 KIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEAQLLNKHIFETIYYG 538 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ AS ELA++ G Y S+ G +G+ D G+ T W LKK++ Sbjct: 539 ALEASCELAEQLGTYESYPGCPVSKGILQYDMWGVTP----------TDLWDWAALKKKI 588 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ A I G ++SI+ N+YV+ +SG+F VVN L+ +L + Sbjct: 589 NEHGLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEFQVVNHHLLRDLTEG 648 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW+E + + + ++GSI NI+ IPDDLK ++ T +EI +I+ A+ R +IDQ+QSL Sbjct: 649 GLWNEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKMAADRGAFIDQSQSL 708 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS-----VEKSTLKGVDGKLNAVP 927 N+++ EP+ KL ++ +W +GLKT YYLR++ A S V+KS LK ++G N+ Sbjct: 709 NIHIAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAASAIQFTVDKSKLKKMNGVDNSAG 768 Query: 928 VTDPN 932 T+ N Sbjct: 769 ATNGN 773 >gi|308182832|ref|YP_003926959.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori PeCan4] gi|308065017|gb|ADO06909.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori PeCan4] Length = 788 Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust. Identities = 315/832 (37%), Positives = 447/832 (53%), Gaps = 115/832 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDP---CN-------IRS------------PQQHVGVVHSSNLCTEI------------ 588 FKD CN IRS P + + ++ E Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463 Query: 589 ----------------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 T + +TAVCNL SINL N + D ++ + Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSK--INTEEDIKRVVPIM- 520 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 VR+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D Sbjct: 521 --VRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDAL 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 ME IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W Sbjct: 579 MEQISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNYA-CDW 637 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 638 QGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL 697 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + W+ + +A++ID LI++A+ RQKW Sbjct: 698 -----NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKW 726 Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IDQ QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 727 IDQGQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|163753570|ref|ZP_02160693.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia algicida OT-1] gi|161325784|gb|EDP97110.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia algicida OT-1] Length = 812 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 289/769 (37%), Positives = 441/769 (57%), Gaps = 34/769 (4%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V + C GL ++ + V + +YDG++ S+L+ + T+ P+YA++ AR Sbjct: 22 VRKLCYGLNNLVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATMTTTHPDYARLAARIS 81 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281 + L +K +K+ M LY EY G KA LL + + + + L Sbjct: 82 VSNL--------HKNTKKSFSETMVDLY-EYVNP--RTGKKAPLLSDEVYNVIMENADRL 130 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 + + Y RDF ++Y G + L Y L +NG E PQ MRV++G+ L + + A+E Sbjct: 131 DSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSVGIHLNDLDA---AIE 187 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400 Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + GI+ L++ A +++ +GG+ Sbjct: 188 TYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQSAGGI 247 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G VR G++I GTNG S G++P L+V NDTA V+QGG KRKG+ Y+E WH D+ Sbjct: 248 GLSIHNVRATGSYIAGTNGTSNGIVPMLRVYNDTARYVDQGGGKRKGSFAIYVEPWHADI 307 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLDL+KN G + R D+ A WIPDLFMKRV +N WTL P+E +L +++ +EFE Sbjct: 308 FDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEENGPWTLMCPNECPNLFNVHSEEFE 367 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y YE E K + I A LW K+L ETG P++ +KD N +S Q+++G + Sbjct: 368 ALYLKYE-----AEGKGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 SSNLCTEI +S +E AVCNL SI L +FD+ +L + + L+ VID N Sbjct: 423 RSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKGGEFDHKELFRVTKRVTKNLNKVIDRN 482 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++A+ SN HR IGLG+ G L +P+ S EA ++ E E + F A++AS+ Sbjct: 483 YYPVKEAENSNFRHRPIGLGVQGLADTFIKLRMPFTSDEAKKLNQEIFETLYFAAVTASM 542 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 E+A+ G Y +++GS +G F + G ++DE + R W +L+K+V G+R Sbjct: 543 EMAKIEGPYQTYEGSPMSKGEFQHNLWG----IKDE---ELSGRWDWGKLRKQVAKNGVR 595 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ +L LW E Sbjct: 596 NSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNLGLWTED 655 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + +L +GSI +I+ IP D+K ++ T +E+ +I+ + R +IDQ+QSLNL+++ Sbjct: 656 LKQELMRANGSIQHIDEIPQDIKDLYKTVWELSMKDIIDMSRHRGYFIDQSQSLNLFMEG 715 Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927 + KL ++ AW GLKT YYLR++SA K T+K + AVP Sbjct: 716 ATMAKLTSMHFYAWRSGLKTGMYYLRTKSAVDAIKFTVKKAKKSI-AVP 763 >gi|296271634|ref|YP_003654265.1| ribonucleoside-diphosphate reductase subunit alpha [Arcobacter nitrofigilis DSM 7299] gi|296095809|gb|ADG91759.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcobacter nitrofigilis DSM 7299] Length = 794 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 298/798 (37%), Positives = 430/798 (53%), Gaps = 107/798 (13%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK----EPNYAKVTARFL 224 A GL+ VS + + DG+S SD++ ALI +T IEK PN+ V AR Sbjct: 27 ATEGLEGVSQSELELDAQIKFIDGMSSSDIQDALI---KTAIEKIDIDVPNWTFVAARLF 83 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA-RLLHESMMDFDLVYLAN 283 + L V T +A H YI+ A R++ +DL L N Sbjct: 84 IFNLYHRVGRTTNSVKGEAYSH---------MSDYIKTAQDAGRMIPGLERGYDLEDLNN 134 Query: 284 DLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 LK ERD F YLG++ LYDRY + N IE+PQ FM +AM LA E +K+ RA EF Sbjct: 135 YLKPERDLQFNYLGIKTLYDRYLIKDKNSDPIELPQHMFMGIAMFLAQDEDDKQARAKEF 194 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y+++S F M +TPTL N+ T QLSSC++ + PD++ GIF +E A+L+KY GG+G Sbjct: 195 YDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMALLSKYGGGIGW 254 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 DW +R LG I G + G +PFLK+ ND A+AV+Q G RKGA+ YLE WH+D+ +F Sbjct: 255 DWNQIRALGGAIDGHKSAAGGTVPFLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDISDF 314 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL+KN+G++RRR HD+ + WI DLFM+R+ +++ WTLF P++V DL +L+G FE Y Sbjct: 315 LDLKKNSGEERRRAHDLFPSLWICDLFMQRIMEDSHWTLFDPNDVKDLSELHGDAFEKRY 374 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE D +K +I A LW+K+LT FE+G P++ FKD N +P HVG + SS Sbjct: 375 IEYEN--DNSIVK--DRIKAKDLWKKILTSYFESGSPFLCFKDNANRANPNAHVGHIRSS 430 Query: 583 NLCTEITLNSSSEETAV---CNLGSINL------------LAHFANNQFDYDKLAS---- 623 NLCTEI N++ + + + GSI L + AN D + Sbjct: 431 NLCTEIFQNTNPNKYKIKLEFDDGSIELYDEDDTIKVDSGIIKKANKVTALDSVGGKKIF 490 Query: 624 --------------------------------TIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + TA+R+LDNVID+N + + K K +N Sbjct: 491 IVEKEKTDGDTAVCNLASVNLSKIHTKEDIERVVPTAIRMLDNVIDLNFYPLRKVKATNL 550 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R+IGLG+MG L + + S + ++ D+ ME IS++AI +S ELA E+G Y +F Sbjct: 551 KSRSIGLGVMGEAQMLAEEKLVWGSVDHLKKIDKVMEAISYNAIKSSAELAVEKGKYPTF 610 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS W +G+ P D E + T WD L+ +VK GMRN MA+APT++ Sbjct: 611 DGSNWSKGIMPHDHAPQAVNALVEKDLFDTG-YDWDALRAQVKKDGMRNGYLMAVAPTSS 669 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 670 ISILVGTTQAIEPVYKRKWYEENLSGLIPVV----------------------------- 700 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LDEPSGKKLDFIY 889 + ++ + + A+E+D + +I++A+ RQKWIDQ QS N++ LD+ SGK + IY Sbjct: 701 --VPKLSPETWSYYTPAYEVDQLDIIKAAAVRQKWIDQGQSTNIFLSLDKASGKYMHQIY 758 Query: 890 RQAWLMGLKTTYYLRSRS 907 AW +GLK+TYYLRS+S Sbjct: 759 TLAWQLGLKSTYYLRSQS 776 >gi|22164662|ref|NP_671575.1| EVM057 [Ectromelia virus] gi|22123803|gb|AAM92361.1|AF523264_57 EVM057 [Ectromelia virus] Length = 771 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 438/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + E Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIES--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L P+E L + +G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDGEWSLMCPNECPGLDNAWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTQYEREKRYKNI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNVFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK ++++ Sbjct: 541 ASCELAEKEGPYDTYAGSYASNGILQYD---LWNVVPSDL-------WNWESLKDKIRSH 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +E + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NEEIKNRIIADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR+++A+S + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAASSPIQFTL 750 >gi|30519447|emb|CAD90622.1| L4L protein [Cowpox virus] Length = 771 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNMDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + E Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIES--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L D++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +E + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|108563087|ref|YP_627403.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori HPAG1] gi|107836860|gb|ABF84729.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter pylori HPAG1] Length = 788 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 309/827 (37%), Positives = 447/827 (54%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------ETAVCNLGSINLLAHFAN 613 FKD N +P H G++ SSNLCTEI N++ + A+ L+ +N Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIDFFEEKELVTTDSN 463 Query: 614 NQFDYDKLAST--------------------------------------IRTAVRVLDNV 635 +KL ST I+ V ++ + Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523 Query: 636 ID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 +D +N + K K +N +RAIGLG+MG L I + S E +E D ME IS Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +HAI S LA+E+G Y F+ S W +G+FPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + W+ + +A++ID LI++A+ RQKWIDQ Q Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 S+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|73988083|ref|XP_862202.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 4 [Canis familiaris] Length = 822 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 289/787 (36%), Positives = 446/787 (56%), Gaps = 62/787 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQAD-------------------------RGEIKVFRKISAVALWRKMLT 551 EFE YE Y + + +V + + A LW ++ Sbjct: 366 EFEKLYERYGKNMKVIIFNHVFLLFGGSKFQNITLPFSYEKQGRVRKVVKAQQLWYAIIE 425 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + Sbjct: 426 SQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 485 Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ Sbjct: 486 TSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILM 545 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 P+ SPEA + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 546 RYPFESPEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP 605 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y Sbjct: 606 ----------TELWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 655 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +E Sbjct: 656 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 715 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A Sbjct: 716 ISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 775 Query: 910 SVEKSTL 916 + + TL Sbjct: 776 NPIQFTL 782 >gi|15645304|ref|NP_207474.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori 26695] gi|2500207|sp|P55982|RIR1_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|2313806|gb|AAD14884.1| ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA) [Helicobacter pylori 26695] Length = 788 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 316/832 (37%), Positives = 451/832 (54%), Gaps = 115/832 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDP---CN-------IRS------------PQQHVGVVHSSNLCTE-------ITLNSS 593 FKD CN IRS P + + ++ E +T +S+ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463 Query: 594 ---------------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 +TAVCNL SINL N + D ++ + Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSK--INTEEDIKRVVPIM- 520 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 VR+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D Sbjct: 521 --VRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDAL 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 ME IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W Sbjct: 579 MEQISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDW 637 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 638 QGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL 697 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + W+ + +A++ID LI++A+ RQKW Sbjct: 698 -----NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKW 726 Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IDQ QSLN++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 727 IDQGQSLNVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|15611688|ref|NP_223339.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori J99] gi|7388069|sp|Q9ZLF9|RIR1_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|4155174|gb|AAD06201.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter pylori J99] Length = 788 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 310/827 (37%), Positives = 446/827 (53%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------ETAVCNLGSINLLAHFAN 613 FKD N +P H G++ SSNLCTEI N++ + A+ L+ +N Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSN 463 Query: 614 NQFDYDKLAST--------------------------------------IRTAVRVLDNV 635 +KL ST I+ V ++ + Sbjct: 464 ITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523 Query: 636 ID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 +D +N + K K +N +RAIGLG+MG L I + S E +E D ME IS Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +HAI S LA+E+G Y F+ S W +G+FPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + W+ + +A++ID LI++A+ RQKWIDQ Q Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 S+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|72084113|ref|XP_780425.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain isoform 1 [Strongylocentrotus purpuratus] gi|115956273|ref|XP_001177269.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain [Strongylocentrotus purpuratus] Length = 797 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 287/764 (37%), Positives = 426/764 (55%), Gaps = 47/764 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 ++ C L + ++ + +Y G++ +L+T ++ T+ K P+YA + AR Sbjct: 25 IQRLCYNLNSDFIDPAVITMKVISGVYPGVTTVELDTLAAETAATMTTKHPDYAVLAARI 84 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L H E + L+ E LH ++ + + + N Sbjct: 85 AVSNL----------------HKETKKLFSAVMKDLFEYTNPRNGLHSPLISEETMMIIN 128 Query: 284 D--------LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 D + Y+RDF + Y G + L Y L ING E PQ MRV++G+ K+ + Sbjct: 129 DNADRLNSAVLYDRDFEYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHGKDIDA 188 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 A++ YNLLS F ++PTLFN+GT PQLSSCFL T+ DD + GI+ L+ A+++ Sbjct: 189 ---AIQTYNLLSDRWFTHASPTLFNAGTNRPQLSSCFLLTMKDDSIDGIYETLKNCALIS 245 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 246 KTAGGIGLNIHNIRASGSYIAGTNGNSNGLLPMLRVYNNTARYVDQGGNKRPGAFAIYLE 305 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +FLD +KN G + +R D+ WIPDLFMKRV + WTL P E LH++ Sbjct: 306 PWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDWTLMCPHESPGLHEV 365 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G+EFE YE YE+ A RG + I A ALW ++ ETG P++ +KD CN +S Q Sbjct: 366 WGEEFETLYEGYEK-AGRGR----KTIKAQALWYAIIESQTETGTPYMVYKDHCNKKSNQ 420 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 Q++G + SNLCTEI SS++E AVCNL SI L + FD+ KL L+ Sbjct: 421 QNLGTIKCSNLCTEIVEYSSADEVAVCNLASIALPRFVQDRTFDFKKLEEVTMVITENLN 480 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +IDIN + + +AK+SN HR IG+G+ G A L+ P+ S EA ++ + E I + Sbjct: 481 KIIDINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRFPFESVEAKKLNIQIFETIYYA 540 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ AS ++A + G Y ++KGS +G+ D G+ T W LK + Sbjct: 541 ALKASCKIAAKLGPYETYKGSPVSKGILQQDMWGVTP----------TDLHDWASLKADI 590 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ A I G +++I+P N+Y + +SG+F VVN L+ +L Sbjct: 591 AKHGVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRRVLSGEFQVVNHHLLRDLTDM 650 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW + M ++L ++GSI NI IPDD+K ++ T +EI +I+ A R +IDQ+QSL Sbjct: 651 GLWSDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQKTIIQMAVDRGAYIDQSQSL 710 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+++ EP+ KL ++ AW GLKT YYLR+R A K TL Sbjct: 711 NIHIAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPAADPIKFTL 754 >gi|255566650|ref|XP_002524309.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] gi|223536400|gb|EEF38049.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] Length = 810 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 294/801 (36%), Positives = 442/801 (55%), Gaps = 57/801 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + Y G++ + L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCSGFYKGVTTTQLDELAAETAAAMTTNHPDYAILAARVAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y R G KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKLMYSHINKR---SGQKASLIADDVYEIIMKNATRLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I+G +E PQ MRVA+G+ + E AV+ Y+L++ F +TP Sbjct: 147 GFKTLERSYLLKIDGKIVERPQHMLMRVAIGIHKDDVES---AVKTYHLMAQRWFTHATP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GIF L+E A+++K +GG+G VR G+ I Sbjct: 204 TLFNAGTPQPQLSSCFLGCMKDDSIEGIFDTLKECAVISKVAGGIGLSVHNVRATGSFIC 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG+S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + R Sbjct: 264 GTNGESNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEER 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A WIPDLFM+RV + W+LF P+E L D +G+EFE Y YE DR + Sbjct: 324 RARDLFYALWIPDLFMERVRGDGSWSLFCPNEAPGLADCWGEEFEKLYTFYE-DGDRAK- 381 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + I A LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTE+ +S Sbjct: 382 ---KVIPARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSP 438 Query: 595 EETAVCNLGSINLLAHFANNQ---------------------FDYDKLASTIRTAVRVLD 633 ETAVCNL SI L F + FD+ KLA T L+ Sbjct: 439 TETAVCNLASI-ALPRFVRERGVPIGSHSSKLVGSRDSKTRYFDFAKLAEITVTITANLN 497 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +IDIN + ++ A++SN HR +G+G+ G LL +P+ S EA ++ + E I +H Sbjct: 498 KIIDINYYPVDTARRSNLRHRPMGIGVQGLADTFILLGMPFDSLEAQQLNKDIFETIYYH 557 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ +S ELA G Y ++KGS +G+ +D G++ + R W+ L++ + Sbjct: 558 ALKSSSELAAIDGPYETYKGSPVSKGILQMDMWGVIP----------SDRWDWNVLREMI 607 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 608 SKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEI 667 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW A+ + + Y +GS+ + IP+ LK I+ T +EI L++ A R +IDQ+QSL Sbjct: 668 GLWSHALKNKIIYENGSVAKVPEIPEQLKAIYKTVWEIKQKTLVDMAVARGCYIDQSQSL 727 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 N+++D+P KL ++ AW GLKT YYLR+R+A K T+ K V T+ Sbjct: 728 NIHMDQPDLGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTSVLKHENVNSTNDY 787 Query: 933 SSTHSLGIPSSCTSDTECEVC 953 T + S + EC C Sbjct: 788 VDTDMAQMVCSLRNREECMAC 808 >gi|302498356|ref|XP_003011176.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371] gi|291174724|gb|EFE30536.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371] Length = 870 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 287/790 (36%), Positives = 442/790 (55%), Gaps = 48/790 (6%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 M+ DG ++ V C GL + V + + +Y G++ +L+ + Sbjct: 1 MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263 + + P+YA + AR + L +K+ +K ++ LY Y+ + G Sbjct: 61 AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIEDLY-----HYVNPKNG 107 Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 A ++ E + + + L + + Y+RDF ++Y G + L Y L NG E PQ Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 MRVA+G+ ++ EK +E YNL+S +F ++PTLFN+GT PQ++SCFL + +D Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+ Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284 Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLF P+E L D+YG+EFE YE YE++ RG I A LW +L ETG+ Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGN 399 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616 P++ +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L ++ Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ S Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA + + E + A++AS ELA+ G YSS++GS QG+ D + Sbjct: 520 PEAKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP------ 573 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 574 ----TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI + Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTI 689 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910 ++ A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ + Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749 Query: 911 VEKSTLKGVD 920 V++ LK VD Sbjct: 750 VDQEQLKVVD 759 >gi|254565653|ref|XP_002489937.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|238029733|emb|CAY67656.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|328350349|emb|CCA36749.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris CBS 7435] Length = 867 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/767 (37%), Positives = 433/767 (56%), Gaps = 43/767 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPKHVDAVAITQRVISGVYHGVTTVELDNLAAETAAYMTTIHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ K+ + T + + P+ G + L+ E + + Sbjct: 82 AVSNLHKQTT----KQYSQVTKELYEYINPK-------NGKHSPLVSEDTYNIVQKHADE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L ING+ E PQ MRVA+G+ + R + Sbjct: 131 LNSAIVYDRDFQYNYFGFKTLERSYLLRINGNVAERPQHLIMRVAIGI---HGDDIARVI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YN +S +F ++PTLFN+GT HPQ+SSCFL + DD + GI+ L+E A+++K +GG Sbjct: 188 ETYNFMSQKYFTHASPTLFNAGTPHPQMSSCFLVAMRDDSIEGIYDTLKECALISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLHIHNIRATGSYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + F+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP E L D+YG EF Sbjct: 308 IFAFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPSEAPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE YE++ RG + I A LW +L ETG P++ +KD CN ++ Q+++GV Sbjct: 368 EELYERYEKEG-RGR----QTIKAQKLWYAILEAQTETGTPFMLYKDACNKKTNQKNLGV 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634 + SSNLC EI SS EETAVCNL SI L A + ++++KL + R L+ Sbjct: 423 IKSSNLCCEIVEYSSPEETAVCNLASIALPAFVETDDTHCWYNFEKLHEITKVVTRNLNR 482 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + + +A++SN +R I +G+ G A L IP+ SPEA ++ + E I A Sbjct: 483 IIDRNFYPVPEARRSNMRNRPIAVGVQGLADAFMKLRIPFDSPEAKQLNIQIFETIYHAA 542 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRV 753 + AS ELA E GAY +F+GS QG+ D L + S L W+ LK ++ Sbjct: 543 LEASNELAVEEGAYETFQGSPASQGILQYD-----------LWDKKPSELWEWESLKAKI 591 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 592 VSTGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDL 651 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LWD+ M + + +GSI N+ IP+ LK ++ T +EI +I+ A+ R +IDQ+QSL Sbjct: 652 GLWDDNMKNHIISDNGSIQNLPNIPEQLKGLYKTVWEISQKTIIDMAADRSAYIDQSQSL 711 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 N++L P+ KL ++ W GLKT YYLR+++A + + T+ V Sbjct: 712 NIHLMAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDKV 758 >gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba] gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba] Length = 812 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 298/819 (36%), Positives = 453/819 (55%), Gaps = 51/819 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L D + ++ + +Y G++ +L+ Sbjct: 11 KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 + L P+YA + AR + L +E V +Y+ K T+ ++ L E Sbjct: 71 AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKVFSDVFEDLYEHVNKETNQKVP-LVSE 129 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 + H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ ++ + AVE YNLLS +F ++PTLF + T PQLSSCFL Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232 Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFMKR Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+L P + L D++G EFE YE YE++ + R + A +LW ++ Sbjct: 353 VEANGDWSLMCPHKCPGLQDVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG+P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT 467 Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +D+ KL + + L+ +IDIN + + +AKKSN HR +G+G+ GF AL L+ Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPVGIGVQGFADALILMR 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 PY S EA + + E I + A+ AS ELAQ G Y +++GS +G+ D Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQAEGPYETYEGSPVSKGILQYD------- 580 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + D++ T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y Sbjct: 581 MWDKVP---TNLWDWQKLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T +EI Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVWEI 697 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 + T V+ K AV + N ++ G P D E Sbjct: 758 AIQFT---VNKKQGAVSINGQNGASE--GSPQKFEEDRE 791 >gi|295659650|ref|XP_002790383.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb01] gi|226281835|gb|EEH37401.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb01] Length = 878 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 289/784 (36%), Positives = 434/784 (55%), Gaps = 60/784 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREV---LTTV------YKKPQKATHHEM--QCLYPEYFCRYIEEGVKARLLHES 272 + L ++ ++V Y P+ M Q Y E R+ +E A Sbjct: 82 AVSNLHKQTKKQFSSVIDDLYHYHNPKNRRPAPMISQSTY-EIVMRHADEFNSA------ 134 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAIGIHGDD 182 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 E R +E YNL+S +F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A Sbjct: 183 VE---RVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D+YG EFE YE YE++ RG+ + I A LW +L ETG+P++ +KD CN + Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKK 414 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628 S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ KL + Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVV 474 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPEA + + E Sbjct: 475 VRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKLLNIQIFE 534 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I ++AS ELA+ G YSS++GS QG+ D G+ T WD Sbjct: 535 TIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----------TDLWDWDS 584 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ Sbjct: 585 LKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +ID Sbjct: 645 DLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGK 922 Q+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTN 764 Query: 923 LNAV 926 + V Sbjct: 765 VARV 768 >gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans] gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans] Length = 812 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 298/819 (36%), Positives = 452/819 (55%), Gaps = 51/819 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L D + ++ + +Y G++ +L+ Sbjct: 11 KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 + L P+YA + AR + L +E V +Y K T+ ++ L E Sbjct: 71 AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVP-LVSE 129 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 + H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ ++ + AVE YNLLS +F ++PTLF + T PQLSSCFL Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232 Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFMKR Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+L P + LH+++G EFE YE YE++ + R + A +LW ++ Sbjct: 353 VEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG+P++ FKD CN +S QQ+VG + SNLCTEI SS +E AVCNL SI L Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVT 467 Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +D+ KL + + L+ +IDIN + + +A+KSN HR +G+G+ GF AL L+ Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 PY S EA + + E I + A+ AS ELAQ G Y +++GS +G+ D Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYD------- 580 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + D++ T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y Sbjct: 581 MWDKVP---TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T +EI Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEI 697 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 + T V+ K AV + N + G P D E Sbjct: 758 AIQFT---VNKKQGAVSMNGQNGTAE--GSPQKYEEDRE 791 >gi|302915563|ref|XP_003051592.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732531|gb|EEU45879.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 893 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 292/797 (36%), Positives = 447/797 (56%), Gaps = 46/797 (5%) Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + DG ++ V C GL V + + +Y G++ L+ ++ Sbjct: 10 LSDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLAAETA 69 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT----HHEMQCLYPEYFCRYIEE 262 + P+YA + AR + L ++ KK A +H + +E Sbjct: 70 AYMTVTHPDYAILAARIAVSNLHKQT-----KKQWSAVVSDLYHYVNPKNDRASPMISQE 124 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + H+ +D +VY +RDF ++Y G + L Y L I+G +E PQ M Sbjct: 125 TYECVMRHKEELDSAIVY-------DRDFQYQYFGFKTLERSYLLKIDGKIVERPQHMIM 177 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E R +E YNL+SS F ++PTLFN+GT PQLSSCFL + +D + Sbjct: 178 RVAVGIWGDNIE---RVLETYNLMSSKFFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 234 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S GV P L+V N+TA V+QG Sbjct: 235 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVTPMLRVFNNTARYVDQG 294 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 295 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 354 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D YG+EFE YE YE+ A +G + + A LW +L ETG+P+ Sbjct: 355 LMCPNECPGLADCYGEEFEALYEKYEK-AGKGR----KTMKAQKLWYAILEAQTETGNPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI + +E AVCNL S+ L + ++ +D+ Sbjct: 410 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPSFINYDEACYDF 469 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL +T VR L+ +ID+N + + +A+ SN HR IG+G+ G A L +P+ SPE Sbjct: 470 QKLHEVTQTVVRNLNRIIDVNHYPVPEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 529 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A E+ + E I A++ASV+LA+E G YS+FKGS +G+ D + Sbjct: 530 ARELNKQIFETIYHAALTASVQLAKEEGPYSTFKGSPASEGILQFDMWNV---------- 579 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + W+ L+++VK G RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 580 KPSDLWDWESLREQVKEHGTRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 639 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW ++M + + +GSI NI IP ++K ++ T +EI +++ Sbjct: 640 FQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPAEVKALYKTVWEISQRQVVQ 699 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ +P+ K+ ++ W +GLKT YYLR+++A + + T Sbjct: 700 MAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFT-- 757 Query: 918 GVDGKLNAVPVTDPNSS 934 VD + A+ V D NS+ Sbjct: 758 -VDQQ--ALKVADANSA 771 >gi|302657477|ref|XP_003020459.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517] gi|291184296|gb|EFE39841.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517] Length = 872 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 287/790 (36%), Positives = 442/790 (55%), Gaps = 48/790 (6%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 M+ DG ++ V C GL + V + + +Y G++ +L+ + Sbjct: 1 MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263 + + P+YA + AR + L +K+ +K ++ LY Y+ + G Sbjct: 61 AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIEDLY-----HYVNPKNG 107 Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 A ++ E + + + L + + Y+RDF ++Y G + L Y L NG E PQ Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 MRVA+G+ ++ EK +E YNL+S +F ++PTLFN+GT PQ++SCFL + +D Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+ Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284 Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLF P+E L D+YG+EFE YE YE++ RG I A LW +L ETG+ Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGN 399 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616 P++ +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L ++ Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ S Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA + + E + A++AS ELA+ G YSS++GS QG+ D + Sbjct: 520 PEAKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP------ 573 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 574 ----TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI + Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTI 689 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910 ++ A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ + Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749 Query: 911 VEKSTLKGVD 920 V++ LK VD Sbjct: 750 VDQEQLKVVD 759 >gi|447146|prf||1913428A ribonucleotide reductase:SUBUNIT=large Length = 811 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/762 (37%), Positives = 435/762 (57%), Gaps = 37/762 (4%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ +L+ ++ T+ K P+YA + AR Sbjct: 22 VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81 Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 + L ++ V +TV ++ + + P + + +K H+ +D ++Y Sbjct: 82 AVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMK----HKDELDSAIIY 137 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +RDF + + G + L Y L I+G E PQ MRVA+G+ ++ E A+ Sbjct: 138 -------DRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDIEA---AI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F ++PTLFN+GT PQLSSCFL T+ DD + GI+ L+ AM++K +G Sbjct: 188 ETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAMISKTAGV 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 L + +R G++I GTNG S G++P ++V N+TA V+QGG KR GA AYLE WH D Sbjct: 248 LVFNIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V +FL+LRK G++ R M A WIPDLFM+RV +N WT F P+E L D++G EF Sbjct: 308 VMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLADVWGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 YE YE++ +RG R + A +W +L ETG+P++ +KD CN +S Q++VG Sbjct: 368 VALYEKYEKE-NRGR----RSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + SSNLCTEI SS +E AVCNL S+ L + ++++ KL ++ R L+ +ID+ Sbjct: 423 IRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKIIDV 482 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + +A++SN HR +GLG+ G A L +P+ S A ++ + E I A+ AS Sbjct: 483 NYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEAS 542 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 E+AQ G Y S++GS QG+ D + N T W E K+++ G+ Sbjct: 543 CEIAQVEGTYESYEGSPCIQGILQYDMWNV----------NPTDLWDWAEFKEKIAKHGI 592 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L +RDLW+E Sbjct: 593 RNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 M + L DGSI I IP DLK ++ T +EI +I+ A+ R +IDQ+QSLN++L Sbjct: 653 DMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLK 712 Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 +PS K+ ++ W GLKT YYLR+ +A++ K T+ V Sbjct: 713 DPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754 >gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila melanogaster] gi|12644286|sp|P48591|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster] gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster] gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila melanogaster] gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct] Length = 812 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 297/819 (36%), Positives = 452/819 (55%), Gaps = 51/819 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L D + ++ + +Y G++ +L+ Sbjct: 11 KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 + L P+YA + AR + L +E V +Y K T+ ++ L E Sbjct: 71 AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVP-LVSE 129 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 + H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ ++ + AVE YNLLS +F ++PTLF + T PQLSSCFL Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232 Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFMKR Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+L P + LHD++G EFE YE YE++ + R + A +LW ++ Sbjct: 353 VEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG+P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT 467 Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +D+ KL + + L+ +IDIN + + +A+KSN HR +G+G+ GF AL L+ Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 PY S EA + + E I + A+ AS ELAQ G Y +++GS +G+ D Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYD------- 580 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + D++ T+ W +LK+ ++ G+RNS +A PTA+ A I G ++S +P N+Y Sbjct: 581 MWDKVP---TNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T +EI Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEI 697 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 + T V+ K AV + N + G P D E Sbjct: 758 AIQFT---VNKKQGAVSMNGQNGTAE--GSPQKYEEDRE 791 >gi|225560468|gb|EEH08749.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces capsulatus G186AR] Length = 881 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 287/784 (36%), Positives = 434/784 (55%), Gaps = 60/784 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYATLAARI 81 Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 + L ++ V+ +Y K Q+ Q Y E R+ +E A Sbjct: 82 AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTY-ETVMRHADEFNSA------ 134 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 E R +E YNL+S F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A Sbjct: 183 VE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV QN+ WTLF P+E L Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEQNSEWTLFCPNEAPGL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D+YG EFE YE YE++ RG+ + + A LW +L ETG+P++ +KD CN + Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILEAQTETGNPFMLYKDSCNRK 414 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628 S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ KL + Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKLHEVTQVV 474 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPEA ++ + E Sbjct: 475 VRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFE 534 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I ++AS ELA+ G YS+++GS QG+ D + T WD Sbjct: 535 TIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +ID Sbjct: 645 DLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGK 922 Q+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTN 764 Query: 923 LNAV 926 + V Sbjct: 765 VARV 768 >gi|317009306|gb|ADU79886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori India7] Length = 788 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 315/832 (37%), Positives = 450/832 (54%), Gaps = 115/832 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDP---CN-------IRS------------PQQHVGVVHSSNLCTE-------ITLNSS 593 FKD CN IRS P + + ++ E +T +S+ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463 Query: 594 ---------------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 +TAVCNL SINL N + D ++ + Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSK--INTEEDIKRVVPIM- 520 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 VR+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D Sbjct: 521 --VRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDAL 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 ME IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W Sbjct: 579 MEQISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDW 637 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 638 QGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL 697 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + W+ + +A++ID LI++A+ RQKW Sbjct: 698 -----NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKW 726 Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IDQ QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 727 IDQGQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|213512716|ref|NP_001133985.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar] gi|209156060|gb|ACI34262.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar] gi|223648756|gb|ACN11136.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar] Length = 792 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/765 (36%), Positives = 435/765 (56%), Gaps = 48/765 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T + TL K P+YA + AR Sbjct: 22 IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAEIAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 + L +E V + V + + +C P +E + L ++ ++ +++ Sbjct: 82 AVSNLHKETKKVFSDVVEDLYNYVNPLNRCHSP----MVAKETLDIVLENKDRLNSAIIF 137 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +RDF++ + G + L Y L ING E PQ MRVA+G+ + + + Sbjct: 138 -------DRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVAVGIHQTDIDA---VI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K +GG Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALISKSAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLEPWHFD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V +FLDL+KNTG + +R D+ WIPDLFMKRV N W+L P + L + +G+EF Sbjct: 308 VFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMCPSDCPGLDECWGEEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YE++ +V R + A +W ++ ETG P++ +KD CN +S QQ++G Sbjct: 368 EKLYTRYEQEG-----RVKRVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID 637 + SSNLCTEI +S +E AVCNL SI L + + FD+ KLA + VR L+ +I+ Sbjct: 423 IKSSNLCTEIVEYTSHDEVAVCNLASIALNMYVTPERTFDFSKLAYVTKVIVRNLNKIIE 482 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + + +A+ SN HR IG+G+ G A L+ P+ S EA ++ + E I + A+ + Sbjct: 483 INYYPVVEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQKLNTQIFETIYYAALES 542 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-----WDELKKR 752 S ELA E GAY ++ GS +G+ L N + P W LK+ Sbjct: 543 SCELAAELGAYETYPGSPVSKGI---------------LQYNMWDKTPTDLWDWTLLKEN 587 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L + Sbjct: 588 IAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTE 647 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R LW+E M + L +GSI I IPDDLK+++ T +EI +++ A+ R +IDQ+QS Sbjct: 648 RGLWNEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWEISQKTILKMAADRGAFIDQSQS 707 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ EP+ KL ++ W GLKT YYLR++ A + + TL Sbjct: 708 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 752 >gi|237751458|ref|ZP_04581938.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter bilis ATCC 43879] gi|229372824|gb|EEO23215.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter bilis ATCC 43879] Length = 785 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 299/822 (36%), Positives = 442/822 (53%), Gaps = 120/822 (14%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ +G++ + +++ A GL S + + YDG++ ++ LI ++ Sbjct: 6 VIKRNGSMEELDITKIQKHTSSAVEGLSGTSQSELEVDAKLQFYDGITTERIQDTLIKTA 65 Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 I+ PN+ V AR L L Y + + T + + Y E G + Sbjct: 66 VDKIDVASPNWTFVAARLFLYDL--------YHRVSRFTGYR-------HLREYFEVGER 110 Query: 266 -ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 +LL FDL L + + +RD F YLG++ LYDRY L NG IE+PQ FM Sbjct: 111 EGKLLKGLKEKFDLDLLDSKIVADRDLQFNYLGIKTLYDRYLLKDSNGKPIELPQHMFMA 170 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 +AM LA E + + A++FY+ LS+F MC+TPTL N+ T QLSSC++ + PD++ GI Sbjct: 171 IAMFLAQNEKDCNEWAIKFYDALSNFEVMCATPTLSNARTTRHQLSSCYIGSTPDNIEGI 230 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 F + +E A+L+KY GG+G D++ VR +G+ I G + G+IPFLK+ ND A+AV+Q G Sbjct: 231 FDSYKEMALLSKYGGGIGWDFSQVRTIGSFIDGHKNAAGGIIPFLKITNDIAIAVDQLGT 290 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGA+ Y+E WH DV EF++LRKN+G++RRRTHD+ A WI DLFM+RV Q++ W+ F Sbjct: 291 RKGAIATYIEIWHNDVTEFIELRKNSGEERRRTHDLFPALWICDLFMERVLQDSQWSFFD 350 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P +L +LYG EF+ YE E+ + V + A LW+K+L FETG P++ F Sbjct: 351 PYTCRELTNLYGDEFKKRYEELEKMPNM----VVSSMPAKDLWKKILNSYFETGLPFLCF 406 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------------SSEET------ 597 KD N +P H G++ SSNLCTEI N+ SEE Sbjct: 407 KDSANRANPNAHSGIIRSSNLCTEIFQNTEPSHYRVEVEFDDGERIYFEESEEVVVDSGV 466 Query: 598 ------------------------------AVCNLGSINLLAHFANNQFDYDKLASTIRT 627 AVCNL SINL + ++ + + Sbjct: 467 TKRANKLTSIDSLKGKKIFNTQRVQTGGQTAVCNLASINL-----SKIHTHEDIERIVPI 521 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVID+N + K K +N +RAIGLG+MG L + + S + D M Sbjct: 522 AVRMLDNVIDLNFYPSRKVKVTNMANRAIGLGVMGEAELLASKLVLWGSEAHFSLIDSIM 581 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E IS++AI AS LA+ERGAY +++GS W +G+FPID A + + + R W+ Sbjct: 582 EAISYNAIKASAMLAKERGAYPTYEGSNWSKGIFPIDK----ANEKAKAIVERIFHYDWE 637 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ VK+ G+RN MAIAPT++I+ + G +Q+I+P Y+ ++ + N+SG ++ S + Sbjct: 638 SLRDLVKSEGIRNGYLMAIAPTSSISILVGTTQTIEPIYKQIWHEENLSG---MIKSVVP 694 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N +E I + +A+ I+ L+ +A+ RQKWI Sbjct: 695 NL-----------------------TLETI-----NFYPSAYSINQHDLVRAAAVRQKWI 726 Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 DQ QSLN++ LD SGK+L IY AW +GLK+TYYLRS+S Sbjct: 727 DQGQSLNIFIRLDSVSGKQLHEIYMLAWSLGLKSTYYLRSQS 768 >gi|255724148|ref|XP_002547003.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] gi|240134894|gb|EER34448.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] Length = 865 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/765 (37%), Positives = 437/765 (57%), Gaps = 45/765 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ + T+ P+YA + AR Sbjct: 22 VQRLCYGLDPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTVHPDYAVLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ T Y K Q LY EY + G+ + ++ + D + + Sbjct: 82 AVSNLHKQT-TKQYSKVS-------QALY-EYVNP--KTGLHSPMISKETYDIIMEHEDE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + + Y L ING E PQ MRVA+G+ K+ R + Sbjct: 131 LNSAIVYDRDFNYNYFGFKTMERSYLLRINGKVAERPQHLIMRVAIGIHGKDI---PRVI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F +P LFN+GT PQ+SSCFL + DD + GI+ L+ A+++K +GG Sbjct: 188 ETYNLMSQRYFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L D+YG EF Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLSDVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YE++ +RG + I A LW +L+ ETG P++ +KD CN ++ Q+++GV Sbjct: 368 EELYTRYEKE-NRGR----QTIKAQKLWYAILSAQTETGTPFMLYKDACNTKTNQKNLGV 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDN 634 + SSNLC EI S+ +E AVCNL SI L + +N ++++KL + R L+ Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEHDESNTWYNFEKLHEVTKVVTRNLNR 482 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID N + + +A++SN HR I LG+ G A L +P+ S EA E+ + E I A Sbjct: 483 VIDRNYYPVPEAERSNMRHRPIALGVQGLADAFMSLRLPFDSQEARELNIQIFETIYHAA 542 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752 + +S+ELA E G Y S+ GS QG+ D NR T WD LK++ Sbjct: 543 VESSIELAAEEGVYESYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQK 590 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 591 MAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +W++AM S++ ++GSI + IPD++K ++ T +EI +I+ A+ R +IDQ+QS Sbjct: 651 LGIWNDAMKSNIISNNGSIQGLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ +P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755 >gi|20178449|ref|NP_619870.1| CPXV083 protein [Cowpox virus] gi|20153067|gb|AAM13528.1|AF482758_79 CPXV083 protein [Cowpox virus] Length = 771 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + E Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIES--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L D++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK ++++ Sbjct: 541 ASCELAEKEGPYETYTGSYASNGILQYD---LWNVVPSDL-------WDWESLKDKIRSY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +E + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|332519181|ref|ZP_08395648.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix algicola 5H-3-7-4] gi|332045029|gb|EGI81222.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix algicola 5H-3-7-4] Length = 827 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/775 (36%), Positives = 441/775 (56%), Gaps = 44/775 (5%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V + C GL ++ I V +YDG++ S+L+ + T+ P+YA++ AR Sbjct: 22 VRKLCYGLNELVDPIKVAMRVIDGLYDGVTTSELDNLAAEQAATMTTAHPDYARLAARIS 81 Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277 + L + +V+T +Y+ T + L E + +E K Sbjct: 82 VSNLHKNTKKTFSDVMTDLYQYVNPRTGKKAPLLSDEVYNVIMENKEK------------ 129 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 L + + Y RDF ++Y G + L Y L ING E PQ MRV++G+ + + + Sbjct: 130 ---LDSAIIYNRDFGYDYFGFKTLERSYLLKINGEIAERPQHMLMRVSIGIHINDLDA-- 184 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396 A+E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + GI+ L++ A +++ Sbjct: 185 -ALETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQS 243 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 +GG+G +R G++I GTNG S G++P LKV NDTA V+QGG KRKG+ Y+E W Sbjct: 244 AGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGSFAMYIEPW 303 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ FLDL+KN G + R D+ A W+PDLFMKRV ++A WTL P+E L D++ Sbjct: 304 HADIFNFLDLKKNHGAEELRARDLFYAMWMPDLFMKRVQEDAQWTLMCPNECPGLCDVHS 363 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EFE Y YE E K + I A LW K+L ETG P++ +KD N +S Q++ Sbjct: 364 EEFEALYTKYE-----AEGKGRKSIKARELWEKILESQIETGTPYMLYKDAANRKSNQKN 418 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +G + SSNLCTEI +S +E AVCNL SI L N +FD+ +L + + L+ V Sbjct: 419 LGTIRSSNLCTEIMEYTSEDEVAVCNLASIALPMFVKNGEFDHKELFRITKRVTKNLNKV 478 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + +++A+ SN HR +GLG+ G A L +P+ S A ++ + E + + A+ Sbjct: 479 IDRNYYPVKEAENSNFRHRPVGLGVQGLADAFIKLRMPFTSDAAKQLNQDIFETLYYAAV 538 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS+E AQ G Y +++GS +G F + L ++++ + R W++L+K+V Sbjct: 539 TASMEEAQVDGPYQTYEGSPMSKGEFQHN----LWNIQED---TLSGRWDWEKLRKQVAK 591 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ +L L Sbjct: 592 HGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVDLGL 651 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E + +++ +GSI ++E IP D+K ++ T +E+ +I+ + +R +IDQ+QSLNL Sbjct: 652 WNEDLKNEIMRANGSIQHVENIPQDIKDLYKTVWELSMKDIIDMSRQRGYFIDQSQSLNL 711 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 +++ + KL ++ AW GLKT YYLR++SA +K T + A PVT Sbjct: 712 FMEGATMAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAKKVT---ISRATKAAPVT 763 >gi|327301679|ref|XP_003235532.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton rubrum CBS 118892] gi|326462884|gb|EGD88337.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton rubrum CBS 118892] Length = 870 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 287/790 (36%), Positives = 441/790 (55%), Gaps = 48/790 (6%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 M+ DG ++ V C GL + V + + +Y G++ +L+ + Sbjct: 1 MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263 + + P+YA + AR + L +K+ +K + LY Y+ + G Sbjct: 61 AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNG 107 Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 A ++ E + + + L + + Y+RDF ++Y G + L Y L NG E PQ Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 MRVA+G+ ++ EK +E YNL+S +F ++PTLFN+GT PQ++SCFL + +D Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+ Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284 Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLF P+E L D+YG+EFE YE YE++ RG I A LW +L ETG+ Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGN 399 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616 P++ +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L ++ Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ S Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA + + E + A++AS ELA+ G YSS++GS QG+ D + Sbjct: 520 PEAKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP------ 573 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 574 ----TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI + Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNISNIPADIKALYKTVWEISQRTI 689 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910 ++ A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ + Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749 Query: 911 VEKSTLKGVD 920 V++ LK VD Sbjct: 750 VDQEQLKVVD 759 >gi|156838441|ref|XP_001642926.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM 70294] gi|156113506|gb|EDO15068.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM 70294] Length = 883 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 285/767 (37%), Positives = 429/767 (55%), Gaps = 47/767 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + C GL + V +Y+G++ +L+ ++ + P+YA + AR Sbjct: 22 ISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTYELDNLAAETAAYMTTVHPDYAVLAARL 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ T V+ K HH + E A L+ + + D + Sbjct: 82 AVSNLHKQT-TKVFSKVIDELHHYVNP----------ENNKPAPLISKDVYDTVMANKDE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L + G E PQ MRVA+G+ + K A+ Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRMKGKVAERPQHMVMRVAIGIHGNDI---KAAI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S +F ++PTLFN+GT PQ+SSCFL + DD + GI+ L+E AM++K +GG Sbjct: 188 ESYNLMSQRYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIEGIYDTLKECAMISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA+ YLE WH D Sbjct: 248 IGLHIHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAMALYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+D+RKN G + R D+ A WIPDLFMKRV +NA WTLFSP E L ++YG+EF Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENADWTLFSPSEAPGLDEVYGEEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y Y + RG+ + I A LW +L ETG P++ +KD CN++S Q+++G Sbjct: 368 EALYNRYVEEG-RGK----KTIKAQKLWYSILEAQTETGTPFMLYKDACNLKSNQRNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRVL 632 + SSNLC EI S+ +ETAVCNL SI L A ++ +++ KL + R L Sbjct: 423 IKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEKSKDEKQSFYNFKKLHDIAKVVTRNL 482 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VID N + +++AK SN HR I LG+ G A LL IP+ S EA E+ E + Sbjct: 483 NRVIDRNYYPVQEAKNSNFRHRPIALGVQGLADAFMLLRIPFESKEAKELNIHIFETLYH 542 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELK 750 A+ AS ELAQE GAY +FKGS +G+ D NR T WD LK Sbjct: 543 GALEASCELAQEEGAYQTFKGSPASEGILQFD------------MWNRKPTDLWDWDTLK 590 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + G+RNS MA PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L Sbjct: 591 SNIIAHGIRNSLVMAPMPTASTSQILGYNECFEPFTSNMYQRRVLSGEFQIVNPYLLRDL 650 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +W+E+M L +GSI N+ +P +LK ++ T +EI +I+ ++ R +IDQ+ Sbjct: 651 VDLGIWNESMKQHLITDNGSIQNLPNVPQELKDLYKTVWEISQKTIIDMSADRSAFIDQS 710 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 S+N+++ P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 711 HSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757 >gi|121706584|ref|XP_001271554.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus clavatus NRRL 1] gi|119399702|gb|EAW10128.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus clavatus NRRL 1] Length = 859 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/774 (36%), Positives = 433/774 (55%), Gaps = 52/774 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y ++ + E + + + H ++ Sbjct: 82 AVSNLHKQTKKQFSLVISDLYHYVNPKNNNPAPMISKETY--------EIVMKHADELNS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF + Y G + L Y L I+G E PQ MRVA+G+ + EK Sbjct: 134 AIVY-------DRDFNYNYFGFKTLERSYLLRISGKVAERPQHLLMRVAVGIHGNDIEK- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ AM++K Sbjct: 186 --AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 244 TAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+Y Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EF+ YE YE++ RG I A LW +L ETG+P++ +KD CN +S Q+ Sbjct: 364 GDEFDALYERYEKEG-RGR----STIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI S+ +E AVCNL S+ L A ++D+ KL ++ VR L Sbjct: 419 NLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +IDIN + + +AKKSN HR I LG+ G A L +P+ SPEA ++ + E I Sbjct: 479 NKIIDINYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSPEARQLNTQIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A++AS ELA++ G Y +++GS QG+ D T WD LK + Sbjct: 539 GALTASCELAKQLGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDSLKAK 588 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 589 IAQSGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVD 648 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QS Sbjct: 649 LGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQMAADRGAFIDQSQS 708 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 LN++L EP+ KL ++ W MGLKT YYLR+ +A+ +V++ LK D Sbjct: 709 LNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|326469969|gb|EGD93978.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton tonsurans CBS 112818] gi|326484125|gb|EGE08135.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton equinum CBS 127.97] Length = 875 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 285/772 (36%), Positives = 435/772 (56%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +K+ +K + LY Y+ + G A ++ E + + + Sbjct: 82 AVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNGRPAPMISEKTREIVMKHA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF ++Y G + L Y L NG E PQ MRVA+G+ ++ EK Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGIHGEDVEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 +E YNL+S +F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K + Sbjct: 186 VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG+ Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGNPFMLYKDSCNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI ++ +E AVCNL SI L ++D+ KL + VR L+ Sbjct: 421 GTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVRNLNR 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + +E+A++SN HR I +G+ G A L +P+ SPEA + + E + A Sbjct: 481 IIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQIFETLYHAA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS ELA+ G YSS++GS QG+ D + T WD LK + Sbjct: 541 LTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLWDWDGLKAEIS 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 KHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK VD Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVVD 762 >gi|238491914|ref|XP_002377194.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus flavus NRRL3357] gi|317146285|ref|XP_001821413.2| ribonucleoside-diphosphate reductase large chain [Aspergillus oryzae RIB40] gi|220697607|gb|EED53948.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus flavus NRRL3357] Length = 854 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 296/806 (36%), Positives = 450/806 (55%), Gaps = 55/806 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTTTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K + LY YI K S +++V Sbjct: 82 AVSNL--------HKQTKKQFSLVISDLY-----HYINPKNKKPAPMISKETYEIVMKHA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF + + G + L Y L I+G E PQ MRV++G+ + EK Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLMRVSVGIHGNDIEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ A+++K + Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCALISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+YG Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFEALYERYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI ++ +E AVCNL S+ L A ++D+ KL ++ VR L+ Sbjct: 421 GTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + + +AK SN HR I LG+ G A L +P+ SPEA ++ + E I A Sbjct: 481 IIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNTQIFETIYHGA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS +LA++ G Y S++GS QG+ D + D T WD LK ++ Sbjct: 541 LTASSDLAKDFGTYESYEGSPVSQGILQYD-------MWDRTP---TDLWDWDALKAKIA 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 QTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD---GKLNA 925 ++L EP+ K+ ++ W MGLKT YYLR+ +A+ +V++ LK D + NA Sbjct: 711 IHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEALKVADTNVARANA 770 Query: 926 V---PVTDPNSSTHSLGIPSSCTSDT 948 S+T+S +P S TS+T Sbjct: 771 SFRKRAVGAASNTYS-AVPRSPTSET 795 >gi|297268644|ref|XP_002799731.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Macaca mulatta] Length = 695 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 266/661 (40%), Positives = 404/661 (61%), Gaps = 25/661 (3%) Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G + ++ +S +D L L + + Y+RDF++ Y G + L Y L ING E PQ Sbjct: 13 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRV++G+ ++ + A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD Sbjct: 73 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 189 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616 P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + + Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T W+ LK+ + G+RNS +A PTA+ A I G ++SI+P N+Y + +S Sbjct: 479 ----TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI + Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 ++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + T Sbjct: 595 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654 Query: 916 L 916 L Sbjct: 655 L 655 >gi|83769274|dbj|BAE59411.1| unnamed protein product [Aspergillus oryzae] Length = 794 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 290/803 (36%), Positives = 444/803 (55%), Gaps = 45/803 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTTTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K + LY YI K S +++V Sbjct: 82 AVSNL--------HKQTKKQFSLVISDLY-----HYINPKNKKPAPMISKETYEIVMKHA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF + + G + L Y L I+G E PQ MRV++G+ + EK Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLMRVSVGIHGNDIEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ A+++K + Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCALISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+YG Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFEALYERYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI ++ +E AVCNL S+ L A ++D+ KL ++ VR L+ Sbjct: 421 GTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + + +AK SN HR I LG+ G A L +P+ SPEA ++ + E I A Sbjct: 481 IIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNTQIFETIYHGA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS +LA++ G Y S++GS QG+ D T WD LK ++ Sbjct: 541 LTASSDLAKDFGTYESYEGSPVSQGILQYDM----------WDRTPTDLWDWDALKAKIA 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 QTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 ++L EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ K+ V N+ Sbjct: 711 IHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEALKVADTNVARANA 770 Query: 934 STHSLGIPSSCTSDTE--CEVCQ 954 S C+ + + C +CQ Sbjct: 771 SFRKRAKVLQCSIENKEACLMCQ 793 >gi|241951096|ref|XP_002418270.1| ribonucleoside-diphosphate reductase large chain 1, putative; ribonucleotide reductase large subunit 1, putative; ribonucleotide reductase r1 subunit 1, putative [Candida dubliniensis CD36] gi|223641609|emb|CAX43570.1| ribonucleoside-diphosphate reductase large chain 1, putative [Candida dubliniensis CD36] Length = 854 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/765 (37%), Positives = 435/765 (56%), Gaps = 45/765 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ + T+ P+YA + AR Sbjct: 22 VQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTIHPDYAVLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ T Y K K + EY + G+ + ++ + D + + Sbjct: 82 AVSNLHKQT-TKQYSKVSKDLY--------EYINP--KTGLHSPMISKETYDIIMEHEDE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF++ Y G + L Y L ING E PQ MRVA+G+ + R + Sbjct: 131 LNSAIVYDRDFSYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDI---PRVI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S F +P LFN+GT PQ+SSCFL + DD + GI+ L+ A+++K +GG Sbjct: 188 ETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L D+YG EF Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YE++ +RG + I A LW +L ETG P++ +KD CN +S Q+++G+ Sbjct: 368 EELYTRYEKE-NRGR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGI 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634 + SSNLC EI S+ +E AVCNL SI L + ++Q +++DKL + R L+ Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVESDQSNTWYNFDKLHDVTKVVTRNLNR 482 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID N + + +A++SN HR I LG+ G A L +P+ S EA E+ + E I A Sbjct: 483 VIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAA 542 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752 + ASVELA+E GAY ++ GS QG+ D NR T WD LK+ Sbjct: 543 VEASVELAKEEGAYETYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQN 590 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + GMRNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 591 LAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +W++AM S + ++GSI + IPD++K ++ T +EI +I+ A+ R +IDQ+QS Sbjct: 651 LGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ +P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755 >gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta] gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta] Length = 812 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 292/794 (36%), Positives = 444/794 (55%), Gaps = 49/794 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L D + ++ + +Y G++ +L+ Sbjct: 11 KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 + L P+YA + AR + L +E V +Y K T+ ++ L E Sbjct: 71 AAEIAAGLTCYHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVS-LVSE 129 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 + H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKTNGKIA 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ ++ + AVE YNLLS +F ++PTLF + T PQLSSCFL Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232 Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFMKR Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+L P + L D++G EFE YE YE++ + R + A +LW ++ Sbjct: 353 VEANGDWSLMCPHKCPGLQDVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWYAIIEA 407 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG+P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT 467 Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +D+ KL + R L+ +IDIN + + +A+KSN HR +G+G+ GF AL L+ Sbjct: 468 PEKTYDFKKLKEVTKIVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 PY S EA + + E I + A+ AS ELAQ G Y +++GS +G+ D Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYD------- 580 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + D++ T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y Sbjct: 581 MWDKVP---TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T +EI Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEI 697 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757 Query: 911 VEKSTL---KGVDG 921 + T+ KG +G Sbjct: 758 AIQFTVNKKKGAEG 771 >gi|189501949|ref|YP_001957666.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus 5a2] gi|189497390|gb|ACE05937.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus 5a2] Length = 790 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 299/831 (35%), Positives = 459/831 (55%), Gaps = 69/831 (8%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG S ++ +E+ C+GL D++ K++ +YD ++ +L+ Sbjct: 3 VVKRDGRYESVKFDKITARIEKLCTGLNTDYINPVDIAMKVI-----AGIYDKVTTVELD 57 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 + ++ K P+Y + AR ++ ++K ++ + M+ LY Y Sbjct: 58 NLAAEIAASMATKHPDYTVLAARI--------AVSNLHKVTSESFSNTMKWLYT-----Y 104 Query: 260 IEE--GVKARLL----------HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 I+ G A L+ H +++D +VY +RD+ ++Y G + L Y L Sbjct: 105 IDPKTGENASLIASDVYKVIREHAALLDKTIVY-------KRDYDYDYFGFKTLERSYLL 157 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 ING +E PQ MRVA+G+ ++ E A++ Y+LLS F +TPTLFN+GT PQ Sbjct: 158 KINGKIVERPQHMLMRVAVGIHKEDIEA---AIQTYHLLSERWFTHATPTLFNAGTPKPQ 214 Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCFL T+ +D + GI+ L++ A +++ +GG+G +R G++I GTNG S G++P Sbjct: 215 LSSCFLLTMKEDSIEGIYDTLKQCAQISQSAGGIGLSIHNIRATGSYIKGTNGISNGIVP 274 Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+ + TA V+QGG +RKG+ YLE WH D+ EFLDLRKN G + R D+ A WI Sbjct: 275 MLRNFDMTARYVDQGGGRRKGSFAIYLEPWHSDIFEFLDLRKNHGKEELRARDLFYALWI 334 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PDLFM+RV N W+LF P+E L D YG+EFE Y+ YER+ K + + A L Sbjct: 335 PDLFMQRVENNEEWSLFCPNESPGLADCYGEEFERLYKKYEREG-----KARKSVKAQEL 389 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +L ETG P++ +KD N +S QQ++G + SSNLCTEI +S EE AVCNL SI Sbjct: 390 WFAILEAQIETGMPFMLYKDSANRKSNQQNLGTIKSSNLCTEIIEFTSPEEVAVCNLASI 449 Query: 606 NLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L F N +FD+ KL + L+ +IDIN + + +A+ SN HR IG+G+ G Sbjct: 450 -ALPKFINQAGKFDHQKLYEITYVITKNLNKIIDINHYPVPEARTSNFRHRPIGIGVQGL 508 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L +P+ SPEA + + E I F A++AS +LA++ G Y +FKGS +G+F Sbjct: 509 ADTFLRLRMPFDSPEARGLNKDIFETIYFAAMTASKDLAKQYGPYETFKGSPISKGIFQF 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D G+ + R W+ L+K V+ G+RNS +A PTA+ + I G ++ + Sbjct: 569 DMWGVEPS---------SGRWDWETLRKEVQLHGVRNSLLLAPMPTASTSQILGNNECFE 619 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P N+Y + +SG+F VVN L+ +L LWDE M ++L +GS+ I+RIP +K+ Sbjct: 620 PYTSNIYTRRVLSGEFIVVNKHLLTDLINLGLWDENMKNELIAANGSVQRIDRIPQHIKE 679 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902 +H T +EI +I+ A+ R +I Q+QS+N++L + + KL ++ AW GLKT YY Sbjct: 680 LHRTVWEIPQKAIIDMAADRGAFICQSQSMNIHLLDANFAKLTSMHFYAWKKGLKTGLYY 739 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 LR+R A K TL+ + LN +PV + + +C VC Sbjct: 740 LRTRPAADAIKFTLQK-EQALNDIPVPQ-KKVEQQVSMVCDAEDSEDCLVC 788 >gi|289621907|emb|CBI61238.1| putative heterokaryon incompatibility protein [Sordaria macrospora] Length = 937 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/779 (36%), Positives = 434/779 (55%), Gaps = 56/779 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ + L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ V+ +Y P+ H M ++ + + H+ Sbjct: 82 AVSNLHKQTKKQWSLVINELYNYVNPKTGKHSPM----------IAKDTYECVMRHKDEF 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 D +VY +RDF ++Y G + L Y L ++G E PQ MRVA+G+ + E Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 R +E YNL+S F ++PTLFN+GT QLSSCFL + +D + GI+ L+ AM+ Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YL Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV EFLDLRKN G + R D+ A WIPDLFMKR+ QN WTL P E L D Sbjct: 302 EPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRIEQNGTWTLMCPHECPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 +YG EFE YE YE++ K + + A LW +L ETG+P++ +KD CN +S Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI S+ +E AVCNL S+ L A + N +D+ KL + VR Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALAAFVDYENASYDFKKLHEVTQVVVR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +ID+N + + +A SN HR IG+G+ G A L +P+ SPEA ++ + E I Sbjct: 477 NLNKIIDVNHYPVMEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSPEARKLNIQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A++AS +LA+E+G YS+++GS QG+ D + ++ W LK Sbjct: 537 YHAALTASCQLAKEQGTYSTYEGSPVSQGILQYDMWNVTP----------SNLWDWAALK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 ADIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 647 VEMGLWSDNMKNRIIAEGGSIQNIASIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923 QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A +V++ LK D ++ Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALKATDDQV 765 >gi|119501198|ref|XP_001267356.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya fischeri NRRL 181] gi|119415521|gb|EAW25459.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya fischeri NRRL 181] Length = 859 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 288/772 (37%), Positives = 432/772 (55%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K + LY Y+ K S +++V Sbjct: 82 AVSNL--------HKQTKKQFSLVISDLY-----HYVNPKNKQPAPMISKETYEIVMKHA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF + + G + L Y L ING E PQ MRVA+G+ EK Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGNNIEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ AM++K + Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+YG Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFCPNEAPGLADVYGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF+ YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFDALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI S+ +E AVCNL S+ L A ++D+ KL ++ VR L+ Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + + +AKKSN HR I LG+ G A L +P+ S EA ++ + E I A Sbjct: 481 IIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHGA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS ELA+E G Y +++GS QG+ D T WD LK ++ Sbjct: 541 LTASCELAKEFGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDSLKTKIA 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 QHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ KL ++ W MGLKT YYLR+ +A+ +V++ LK D Sbjct: 711 IHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|195403619|ref|XP_002060363.1| GJ14594 [Drosophila virilis] gi|194140867|gb|EDW57333.1| GJ14594 [Drosophila virilis] Length = 818 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 301/813 (37%), Positives = 448/813 (55%), Gaps = 55/813 (6%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDG 192 SKS P KL ++ DG + ++ V++ C L D + ++ + +Y G Sbjct: 4 SKSLKP--EKLYVIKRDGRKEEIHFDKITSRVQKLCYNLNMDFVDPVSITLKVINGLYCG 61 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATH 245 ++ +L+ + +L +YA + AR + L +E V +YK + T+ Sbjct: 62 VTTQELDNLAAEIAASLTTHHADYALLAARIAVSNLHKETRKVFSDVFEDLYKHVNRETN 121 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 E + EY H +++ + L + + Y+RDF + Y G + L Y Sbjct: 122 -ETSPMVSEY--------------HYNIVANNSDRLNSAIIYDRDFGYNYFGFKTLERSY 166 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L ING E PQ MRVA+G+ + + A+E YNLLS +F ++PTLF + T Sbjct: 167 LLKINGKIAERPQHMLMRVAIGIHGDDIDS---AIETYNLLSERYFTHASPTLFAAATNR 223 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSCFL T+ D + GIF +++ AM++K +GG+G + +R G I GTNG S G+ Sbjct: 224 PQLSSCFLLTMASDSIEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSISGTNGTSNGL 283 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V N+ A V+QGG KR GA YLE WH DV EFLDL+KNTG + R D+ A Sbjct: 284 VPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYAL 343 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV N W+L P + L D++G+EFE Y YE++ + I + A Sbjct: 344 WIPDLFMKRVEANEDWSLMCPHKCPGLQDVWGEEFEKLYVKYEKEGRQNRI-----VKAQ 398 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +LW ++ ETG P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL Sbjct: 399 SLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLA 458 Query: 604 SINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 SI L + A +D+ KL + + L+ +IDIN + + +AKKSN HR IG+G+ G Sbjct: 459 SIALNMFVTAEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQG 518 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 F AL L+ PY S EA + + E I + A+ AS EL+++ G Y ++ GS +GV Sbjct: 519 FADALILMRFPYESEEASLLNQQIFETIYYGALEASCELSKKDGPYETYIGSPVSKGVLQ 578 Query: 723 IDSIGLLAEVRDELAMNR--TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D NR T WD LK+ +K G+RNS +A PTA+ A I G ++ Sbjct: 579 YD------------MWNRSPTDLWDWDHLKRSIKQHGVRNSLLIAPMPTASTAQIMGNNE 626 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S +P N+Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP++ Sbjct: 627 SFEPYTSNIYTRRVLSGEFQVVNPHLLRDLTELDLWDDEMKNQIIASRGSIQNIESIPEE 686 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 ++ ++ T +EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT Sbjct: 687 IRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTG 746 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 YYLR++ A + + T VD ++ V + N Sbjct: 747 MYYLRTKPAANAIQFT---VDKNVSVVEINAQN 776 >gi|94489757|gb|ABF28844.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 438/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA+++G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKKGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|71020483|ref|XP_760472.1| hypothetical protein UM04325.1 [Ustilago maydis 521] gi|46100377|gb|EAK85610.1| hypothetical protein UM04325.1 [Ustilago maydis 521] Length = 1117 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/767 (37%), Positives = 431/767 (56%), Gaps = 51/767 (6%) Query: 166 VEEACSGL-QDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL Q+ I + + + +Y+G++ +L+ ++ P+YA + AR Sbjct: 254 ISKLCYGLDQNYVDPIEITRKVIEGIYEGVTTVELDNLAAETAAYKTTTHPDYAVLAARI 313 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L +E V+ +Y+ P+ H M + K + H+ + Sbjct: 314 AISNLHKETSKNFSQVVQALYEYVNPKNGRHSPMIS----------DATYKVVMEHKDQL 363 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 D ++Y ERDF + + G + L Y L ING E PQ MRVA+G+ ++ E Sbjct: 364 DSAIIY-------ERDFHYNFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGQDIE 416 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 A+E YNL+S +F ++PTLFN+GT HPQLSSCFL T+ DD + GI+ L+ AM+ Sbjct: 417 S---AIETYNLMSQKYFTHASPTLFNAGTPHPQLSSCFLVTMKDDSIDGIYDTLKTCAMI 473 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA Y+ Sbjct: 474 SKTAGGIGLNIHCIRGTGSYIAGTNGVSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYI 533 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV EFLDLRKN G + R ++ A W+PDLFMKRV QN W+L P+E L D Sbjct: 534 EPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMCPNECPGLAD 593 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG EFE YE YE E + R + A LW +L ETG+P+I +KD N +S Sbjct: 594 CYGDEFERLYERYE-----AEGRSKRTVKAQKLWYAILESQTETGNPFILYKDAANRKSN 648 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVR 630 Q+++G + SNLCTEI S+ +E AVCNL SI L +D+ +L S + + Sbjct: 649 QKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKTYDFKRLHSVAKAICK 708 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +IDIN + +E+A+KSN HR IG+G+ G A ++ + S EA + + E I Sbjct: 709 NLNKIIDINYYPVEEARKSNMRHRPIGIGVQGLADAFMIMGYAFESAEARRLNVQIFETI 768 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+ S ELA++ G+Y ++ GS QG D G+ + W ELK Sbjct: 769 YHAALERSCELAEQHGSYETYAGSPASQGELQYDMWGVTP----------SDLWDWAELK 818 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ EL Sbjct: 819 AKIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLREL 878 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 ++ LW++ M + + H GSI N+ IPD +KK++ T +EI +I+ A+ R +I Q+ Sbjct: 879 VEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKAIIDMAADRGAFICQS 938 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 QSLN++L P+ +L ++ W GLKT TYYLR++ A++ + TL Sbjct: 939 QSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAIQFTL 985 >gi|221059988|ref|XP_002260639.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium knowlesi strain H] gi|193810713|emb|CAQ42611.1| ribonucleoside-diphosphate reductase, large subunit, putative [Plasmodium knowlesi strain H] Length = 848 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 278/736 (37%), Positives = 418/736 (56%), Gaps = 37/736 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ +L+ + + P+++ + AR + L + + A E Sbjct: 87 MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDI------AEVAEA 140 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305 +Y + G A L+ + + DF + + L ++ Y RDF ++Y G + L Y Sbjct: 141 LYMYKDV------RGRPASLISKEVYDFMIQHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L ING IE PQ MRV++G+ + + EK A+E Y+L+S +F +TPTLFNSGT Sbjct: 195 LLRINGKIIERPQHLLMRVSIGIHIGDLEK---ALETYHLMSQKYFTHATPTLFNSGTPR 251 Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL + D + GIF L++ A+++K +GG+G +RG ++I GTNG S G+ Sbjct: 252 PQMSSCFLLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAV 371 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFMKRV +N WTL P+E L + +G EFE Y YE + G+ + + A Sbjct: 372 WVPDLFMKRVKENQNWTLMCPNECPGLSESWGAEFEKLYLKYEEEG-MGK----KTVLAQ 426 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL Sbjct: 427 DLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486 Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L +F++ KL + R LD +I+ N + +++A++SN HR IG+G+ Sbjct: 487 SIALCKFVDVDKREFNFKKLYEITKIITRNLDQIIERNYYPVQEAERSNKRHRPIGIGVQ 546 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G LL PY S A E+ E + + A+ S+ELAQ G Y +++GS QG+ Sbjct: 547 GLADTFMLLRYPYESDSAKELNKRIFETMYYAALEMSMELAQIYGPYETYQGSPASQGIL 606 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D + + WD+LK+++K G+RNS +A PTA+ + I G ++S Sbjct: 607 QFDMWNVKVD---------NKYWDWDKLKEKIKKHGLRNSLLLAPMPTASTSQILGNNES 657 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP+DL Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDL 717 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K+++ T +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777 Query: 901 YYLRSRSATSVEKSTL 916 YYLR+++AT K T+ Sbjct: 778 YYLRTQAATDAIKFTV 793 >gi|291244082|ref|XP_002741928.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain-like, partial [Saccoglossus kowalevskii] Length = 759 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 292/739 (39%), Positives = 431/739 (58%), Gaps = 34/739 (4%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+T ++ ++ K P+YA + AR + L +E +K M Sbjct: 11 VYPGVTTVELDTLAAETAASMTTKHPDYAVLAARIAVSNLHKET--------KKTFSAVM 62 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 L+ R + ++ + L + + Y+RDF + + G + L Y L Sbjct: 63 DDLFNYVNPRNNKPSPMISTKIHDIITNNAERLNSAIIYDRDFNYNFFGFKTLERSYLLK 122 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 ING E PQ MRV++G+ + E A+E YNLLS F ++PTLFN+GT PQL Sbjct: 123 INGKVAERPQHMLMRVSVGIHHNDIEG---AIETYNLLSEKWFTHASPTLFNAGTCRPQL 179 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL T+ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P Sbjct: 180 SSCFLLTMKDDSIEGIYDTLKQCALISKSAGGIGVNVHCIRASGSYIAGTNGSSNGLLPM 239 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 L+V N+TA V+QGG KR GA YLE WH D+ +FLD +KNTG + +R D+ A WIP Sbjct: 240 LRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLDAKKNTGKEEQRARDLFYALWIP 299 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV N WTL P+E LHD++GKEFE YE YER E K + I A LW Sbjct: 300 DLFMKRVETNQDWTLMCPNECPGLHDVWGKEFEDLYEKYER-----ENKGTKTIKAQLLW 354 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI- 605 ++ ETG P++ +KD CN +S Q++G + SNLCTEI SS +E AVCNL SI Sbjct: 355 YAIIEAQTETGTPYMLYKDACNRKSNHQNLGTIKCSNLCTEIVEFSSPDEVAVCNLASIA 414 Query: 606 -NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 N+ + +D+ KL VR L+ +ID+N + +E+A+ SN HR IG+G+ G Sbjct: 415 VNMFVK-PDKTYDFKKLEQVTGVIVRNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA 473 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 A L+ P+ S EA+ + + E I + A+ AS ELA+ GAY S+K + G P+ Sbjct: 474 DAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDGAYESYK---FGDGC-PV- 528 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 S G+L D + T WD LKK + T G+RNS +A PTA+ A I G ++S++P Sbjct: 529 SKGILQ--YDMWDVTPTDLHDWDALKKDIATHGLRNSLLLAPMPTASTAQILGNNESVEP 586 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 N+Y + +SG+F VVN L+ +L + LW++ M + L ++GSI +I+ IPD +KK+ Sbjct: 587 YTTNIYSRRVLSGEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSIQSIDGIPDHIKKL 646 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903 + T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ AW GLKT YYL Sbjct: 647 YRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFFAWKQGLKTGMYYL 706 Query: 904 RSRSAT-----SVEKSTLK 917 R+R A +V K++LK Sbjct: 707 RTRPAADPIKFTVNKTSLK 725 >gi|167524415|ref|XP_001746543.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774813|gb|EDQ88439.1| predicted protein [Monosiga brevicollis MX1] Length = 784 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 288/743 (38%), Positives = 422/743 (56%), Gaps = 39/743 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G+ + L+ ++ + + P+YA + AR + L +K+ K+ M Sbjct: 47 VYSGVHTTQLDQLAAETAASFTTRHPDYAILAARISVSNL--------HKQTNKSFSQTM 98 Query: 249 QCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + L+ EY + G A L+ + ++++ + L + + Y+RDF F + G + L Y Sbjct: 99 KALH-EYVNP--KTGKLAPLVSDETWAVIEKNKELLDSHVIYDRDFNFNFFGFKTLERSY 155 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L ING +E PQ FMRV++G+ + +E YN +S F ++PTLFNSGT Sbjct: 156 LLKINGQVVERPQHMFMRVSVGI---HGDNLDAVLETYNHMSQGLFTHASPTLFNSGTPL 212 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSCFL ++ DD + GI+ L AM++K +GG+G VR G++I GTNG+S G+ Sbjct: 213 AQLSSCFLVSMKDDSIKGIYDTLTTCAMISKTAGGVGLSIHNVRASGSYIAGTNGESNGL 272 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V N+TA V+QGG KR GA YLE WH DV EFLDL+KN G D R D+ A Sbjct: 273 VPMLRVYNNTARYVDQGGNKRPGAFAVYLEPWHADVFEFLDLKKNHGSDELRARDLFYAL 332 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFMKRV +N WTL P E L D YG EFE YE YER+ RG + I A Sbjct: 333 WVPDLFMKRVERNEQWTLMCPHECPGLADCYGAEFEALYERYEREG-RGR----KTIDAQ 387 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P++ +KD CN +S Q+++G + SNLCTEI S+ +E AVCNL Sbjct: 388 KLWFAILESQTETGTPYMLYKDACNEKSNQKNLGTIRCSNLCTEIVEYSAPDEVAVCNLA 447 Query: 604 SINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 S+ L F N +D+++L ++ R L+ +IDIN + + +AK SN HR IG+G+ Sbjct: 448 SL-ALPKFVNEDTRTYDFERLHDVVKIVTRNLNRIIDINYYPVPEAKNSNMRHRPIGIGV 506 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A L+ +P+ SPEA ++ E I A+ AS E+AQ G Y +++GS QG Sbjct: 507 QGLADAFILMRLPFDSPEARDLNKRIFETIYHAALEASCEIAQRDGPYKTYEGSPVSQGT 566 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ T + W LK ++ G+RNS +A PTA+ A I G ++ Sbjct: 567 LQYDMWGITP----------TDQWDWAALKAKIAEHGVRNSLLVAPMPTASTAQILGNNE 616 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P N+Y + +SGDF VVN L+ +L + +W + + ++GSI I IPDD Sbjct: 617 SIEPYTSNIYSRRVLSGDFQVVNKHLLKDLVELGIWSNDIKQQIILNNGSIQAIAGIPDD 676 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 +K ++ T +E+ LI+ A+ R +IDQ+QS N+++ EP+ KL ++ AW GLKT Sbjct: 677 IKALYKTVWELSQRTLIDLAADRGAFIDQSQSFNVHMGEPNFGKLTSMHFYAWKQGLKTG 736 Query: 900 TYYLRSRSATSVEKSTLKGVDGK 922 YYLR+R+A S K T+ K Sbjct: 737 MYYLRTRAAASAIKFTIDATKAK 759 >gi|46121591|ref|XP_385350.1| hypothetical protein FG05174.1 [Gibberella zeae PH-1] Length = 913 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 268/651 (41%), Positives = 396/651 (60%), Gaps = 30/651 (4%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L I+G E PQ MRVA+G+ + E R + Sbjct: 149 LDSAIVYDRDFNYNYFGFRTLSRSYLLQIDGKIAERPQHMIMRVAVGIWGDDIE---RVL 205 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+SS F ++PTLFN+GT PQLSSCFL + +D + GI+ L+ AM++K +GG Sbjct: 206 ETYNLMSSKFFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIDGIYDTLKTCAMISKMAGG 265 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH D Sbjct: 266 IGLNAHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHAD 325 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D YG EF Sbjct: 326 VFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVERNGEWTLMCPNECPGLADCYGDEF 385 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE YER+ K + I A LW +L ETG+P++ +KD CN +S Q+++G Sbjct: 386 EALYEKYEREG-----KGRKSIKAQKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGT 440 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SSNLCTEI + +E AVCNL S++L ++ + +D+ KL + VR L+ +I Sbjct: 441 IRSSNLCTEIIEYCAPDEVAVCNLASLSLPSFINYEDACYDFKKLHEVTQVVVRNLNKII 500 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + +++A+ SN HR IGLG+ G A L +P+ SPEA E+ + E I A++ Sbjct: 501 DVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALT 560 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKT 755 SV+LA+E G YS+FKGS +G+ D + + S L W+ L++ VKT Sbjct: 561 TSVQLAKEEGPYSTFKGSPASEGILQFDMWNV-----------KPSDLWDWEPLREDVKT 609 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L L Sbjct: 610 HGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGL 669 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W +AM + + +GSI NI IP ++K ++ T +EI +++ A+ R +IDQ+QSLN+ Sbjct: 670 WSDAMKNRIIADNGSIQNIPNIPAEIKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNI 729 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++ +P+ K+ ++ W +GLKT YYLR+++A +V++ LK D Sbjct: 730 HMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQENLKIAD 780 >gi|328864042|gb|EGG13141.1| hypothetical protein MELLADRAFT_41450 [Melampsora larici-populina 98AG31] Length = 871 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 278/768 (36%), Positives = 436/768 (56%), Gaps = 44/768 (5%) Query: 166 VEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL +V + + + +++G++ +L+ ++ + + P+YA + AR Sbjct: 23 INKLCYGLDNVHVEPIEITKKVINGVFNGVTTVELDNLAAETAAYMTTRHPDYAVLAARI 82 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESM---MDFDL 278 + L +E +K ++ LY RY+ + G + ++ + + + Sbjct: 83 AISNLHKET--------KKLFSQVIEDLY-----RYVNPKNGRPSPMISDETYEAVQANA 129 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF + Y G + L Y L I+ E PQ MRVA+G+ + + R Sbjct: 130 EALNSAVIYDRDFNYNYFGFKTLERSYLLRIDNKVAERPQHMLMRVAVGIHGTDVD---R 186 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYS 397 A+ YNL+S +F ++PTLFNSGT HPQLSSCFL ++ D + GI+ L+ AM++K + Sbjct: 187 AIRTYNLMSEKYFTHASPTLFNSGTPHPQLSSCFLVSMKSDSIDGIYDTLKTCAMISKTA 246 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA Y+E WH Sbjct: 247 GGIGLNIHDIRATGSYIAGTNGYSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYIEPWH 306 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV ++LDLRKN G + R D+ A WIPDLFM+RV N W LF P E L D+YG+ Sbjct: 307 ADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMQRVEDNGDWPLFCPAEAPGLSDVYGE 366 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 FE ++ YE++ + + + A LW +L ETG+P++ +KD N +S Q+++ Sbjct: 367 AFEKLFDQYEKEG-----RAKKTVKAQKLWYAILEAQTETGNPFMLYKDAANRKSNQKNL 421 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SSNLCTEI S+ +E AVCNL SI L + + +D+ KL + L+ +I Sbjct: 422 GTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYITDGVYDFQKLHEVTKEVTWNLNRII 481 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + + +AKKSN HR IG+G+ G A +L +P+ SPEA ++ + E + A+ Sbjct: 482 DVNYYPVPEAKKSNMRHRPIGIGVNGLADAFQILKLPFDSPEAKKLNAQIFETLYHAALE 541 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA GAY +F GS G D G+ + WD+LK+R+K Sbjct: 542 ASNELAVAEGAYETFPGSPASLGELQYDMWGVTP----------SDLWKWDDLKERIKAT 591 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ EL + LW Sbjct: 592 GLRNSLLLAPMPTASTSQIMGFNECFEPYTSNIYTRRVLAGEFQIVNPWLLKELVEMGLW 651 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ M + + H GSI NI IP +K ++ T +EI +I+ A+ R +IDQ+QSLN++ Sbjct: 652 NDEMKNRIIAHQGSIQNIPDIPTKMKAVYKTVWEISQKVIIDLAADRGAFIDQSQSLNIH 711 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 L P+ +L ++ AW GLKT YYLR+R+A + + T VD KL Sbjct: 712 LQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFT---VDKKL 756 >gi|314055218|ref|YP_004063556.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus tauri virus 2] gi|313575109|emb|CBI70122.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus tauri virus 2] Length = 747 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 280/739 (37%), Positives = 424/739 (57%), Gaps = 45/739 (6%) Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 ++ S V + ++YDG++ +++T LI +P+Y E+L Sbjct: 31 ENCDSSKVAQQVASSLYDGITVQEIDTLSAEVCIGLITSDPDY--------------EIL 76 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293 T + T +Q + P F +++ KA ++ E + + +D+ +RD+ F Sbjct: 77 AT------RITASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AGRVRDDIDTKRDYDF 129 Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 Y GL+ L Y ++G +E PQ FMRVA+G+ ++ + +E Y+ +S F+ Sbjct: 130 GYFGLKTLEKSYLQRLDGILMETPQYMFMRVAIGIHGEDIDS---VLETYDKMSQGMFIH 186 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTLFN+GT PQ+SSCFL +D + GI+G L E A ++K++GG+G VR + Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKEDSINGIYGTLTECAQISKWAGGIGMHIHDVRANKS 246 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I GTNG+S G+IP L+V N TA VNQ G+RKG++ YLE WH D+ EFL+LR N GD+ Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMEFLELRLNQGDE 306 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R D+ ++ WIPDLFMKRV + W+LF PD+ L D G+EFE Y YE + Sbjct: 307 EARCRDLFSSLWIPDLFMKRVEEGGQWSLFCPDKAPGLSDAVGEEFEALYTKYEAEGRAN 366 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 I + A +W+ +L ETG P++ +KD CN +S Q+++G + SSNLCTEI + Sbjct: 367 AI-----VPAADVWKAILKSQTETGTPYMLYKDACNKKSNQKNLGTIKSSNLCTEILEYT 421 Query: 593 SSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +ETAVCNL SI L + N + FDY+KL + + L+ VID N + +E A+KS Sbjct: 422 DKDETAVCNLASI-ALPKYVNEETRTFDYEKLHEITKIVTKNLNRVIDRNFYPVETARKS 480 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IGLG+ G L + S EA E+ E + ++ AS ELA+ +G+Y Sbjct: 481 NMRHRPIGLGVQGLADVFILCRYAFDSDEAKEMNARIFETMYHASLEASCELAEAQGSYE 540 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F+GS QGV D + E +L + WD LK+R+K G+RNS MA PT Sbjct: 541 TFEGSPTSQGVLQFD----MWEGETKLNYD------WDVLKERIKEKGLRNSLLMAPMPT 590 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++ +P N+Y++ ++G+F +VN LVN+LK+ LW + M + G Sbjct: 591 ASTAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVNDLKKIGLWSKDMKDLMVKAGG 650 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI NI IPDD+K ++ T +EI +I+ A++R ++IDQ+QS+NL+++ P+ KL ++ Sbjct: 651 SIQNISDIPDDIKNLYRTVWEIKMKDVIDMAAQRGRFIDQSQSMNLFMESPTMSKLSSMH 710 Query: 890 RQAWLMGLKT-TYYLRSRS 907 AW GLKT YYLRS++ Sbjct: 711 MYAWKQGLKTGMYYLRSKA 729 >gi|94485925|gb|ABF25031.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A A+W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARAVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NNEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|240280028|gb|EER43532.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces capsulatus H143] gi|325088748|gb|EGC42058.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces capsulatus H88] Length = 881 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/784 (36%), Positives = 434/784 (55%), Gaps = 60/784 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYATLAARI 81 Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 + L ++ V+ +Y K Q+ Q Y E R+ +E A Sbjct: 82 AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTY-ETVMRHADEFNSA------ 134 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 E R +E YNL+S F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A Sbjct: 183 VE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N+ WTLF P+E L Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNSEWTLFCPNEAPGL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D+YG EFE YE YE++ RG+ + + A LW +L ETG+P++ +KD CN + Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILEAQTETGNPFMLYKDSCNRK 414 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628 S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ KL + Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKLHEVTQVV 474 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPEA ++ + E Sbjct: 475 VRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFE 534 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I ++AS ELA+ G YS+++GS QG+ D + T WD Sbjct: 535 TIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +ID Sbjct: 645 DLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGK 922 Q+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTN 764 Query: 923 LNAV 926 + V Sbjct: 765 VARV 768 >gi|70994760|ref|XP_752157.1| ribonucleotide reductase large subunit Rnr1 [Aspergillus fumigatus Af293] gi|66849791|gb|EAL90119.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus fumigatus Af293] gi|159124928|gb|EDP50045.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus fumigatus A1163] Length = 859 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/772 (37%), Positives = 432/772 (55%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K + LY Y+ K S +++V Sbjct: 82 AVSNL--------HKQTKKQFSLVISDLY-----HYVNPKNKQPAPMISKETYEIVMKHA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF + + G + L Y L ING E PQ MRVA+G+ EK Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGNNIEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ AM++K + Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+YG Sbjct: 306 ADIFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFCPNEAPGLADVYGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF+ YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFDALYERYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI S+ +E AVCNL S+ L A ++D+ KL ++ VR L+ Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + + +AKKSN HR I LG+ G A L +P+ S EA ++ + E I A Sbjct: 481 IIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHGA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS ELA+E G Y +++GS QG+ D T WD LK ++ Sbjct: 541 LTASCELAKEFGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDSLKAKIA 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 QHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ KL ++ W MGLKT YYLR+ +A+ +V++ LK D Sbjct: 711 IHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|315635422|ref|ZP_07890688.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter butzleri JV22] gi|315480180|gb|EFU70847.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter butzleri JV22] Length = 794 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 303/809 (37%), Positives = 439/809 (54%), Gaps = 113/809 (13%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK----EPNY 216 +++ + EA GL+ VS + + + DG+ D++ ALI +T +EK PN+ Sbjct: 19 KIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI---KTAVEKIDIDVPNW 75 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESM 273 V AR L L Y + ATH + E +C YI+ G++A L S+ Sbjct: 76 TFVAARLFLFDL--------YHRVGIATH----GVKGEAYCHLKDYIKFGIEAGRLIPSI 123 Query: 274 MD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALK 331 D +DL L + + RD F YLG++ LYDRY + + IE+PQ FM +AM LA Sbjct: 124 ADGYDLDELNSYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQMFMAIAMFLAQN 183 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391 E +K+ +A EFY+++S F M +TPTL N+ T QLSSC++ + PD++ GIF +E A Sbjct: 184 EKDKQSKAKEFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMA 243 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 +L+KY GG+G DW +R LG I + G +PFLK+ ND A+AV+Q G RKGA+ Y Sbjct: 244 LLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQLGTRKGAIAVY 303 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 LE WH+D+ +F+DL+KN+G++RRR HD+ A WI DLFM+RV +++ WTLF P EV DL Sbjct: 304 LEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWTLFDPYEVRDLS 363 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + +G EF+ Y YE E ++ A LW+K+LT FE G P++ +KD N + Sbjct: 364 ETFGDEFKAKYIAYEND----ETITKDRMKAKDLWKKILTSYFEVGSPFLCWKDTANRTN 419 Query: 572 PQQHVGVVHSSNLCTEITLN-----------------SSSEET--------------AVC 600 P HVG + SSNLCTEI N S+ EE+ V Sbjct: 420 PNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVDGGVTKKANKVS 479 Query: 601 NLGSINLLAHF--ANNQFDYD----KLAS--------------TIRTAVRVLDNVIDINC 640 L S+N F + D D LAS + TA+R+LDNVID+N Sbjct: 480 ALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAIRMLDNVIDLNF 539 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + K K +N R+IGLG+MG L + + S E + D+ ME IS++ I +S + Sbjct: 540 YPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEAISYNTIKSSSD 599 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA E+G Y +F+GS W +G+ P D + + TS WD L+++VK GMRN Sbjct: 600 LASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDLFDTS-YDWDVLREKVKKDGMRN 658 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 659 GYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------------------ 700 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LD 878 + R+ + + AFEID + +I++A+ RQKWIDQ QS N++ LD Sbjct: 701 -------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLD 747 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + SGK L IY AW +GLK+TYYLRS+S Sbjct: 748 KASGKYLHEIYTLAWKLGLKSTYYLRSQS 776 >gi|229597646|pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg. gi|229597647|pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg Length = 676 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 270/687 (39%), Positives = 414/687 (60%), Gaps = 32/687 (4%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLAND 284 R ++ ++K+ +K M+ LY YI G + ++ +S +D L L + Sbjct: 7 RIAVSNLHKETKKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSA 61 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + A+E YN Sbjct: 62 IIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYN 118 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403 LLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G Sbjct: 119 LLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVA 178 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462 + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EF Sbjct: 179 VSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEF 238 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE Y Sbjct: 239 LDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLY 298 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++G + S Sbjct: 299 ASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCS 353 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 NLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + Sbjct: 354 NLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYY 413 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A SN HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +L Sbjct: 414 PVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDL 473 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G Y +++GS +G+ D + T W LK+++ G+RNS Sbjct: 474 AKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNS 523 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M Sbjct: 524 LLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMK 583 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ Sbjct: 584 NQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPN 643 Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRS 907 KL ++ W GLKT YYLR+R+ Sbjct: 644 YGKLTSMHFYGWKQGLKTGMYYLRTRA 670 >gi|315056831|ref|XP_003177790.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma gypseum CBS 118893] gi|311339636|gb|EFQ98838.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma gypseum CBS 118893] Length = 870 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/790 (36%), Positives = 440/790 (55%), Gaps = 48/790 (6%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 M+ DG ++ V C GL + V + + +Y G++ +L+ + Sbjct: 1 MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263 + + P+YA + AR + L +K+ +K + LY Y+ + G Sbjct: 61 AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNG 107 Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 A ++ E + + + L + + Y+RDF ++Y G + L Y L NG E PQ Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 MRVA+G+ ++ EK +E YNL+S +F ++PTLFN+GT PQ++SCFL + +D Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+ Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284 Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLF P+E L D+YG+EFE YE YE+ RG I A LW +L ETG+ Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKDG-RGR----STIKAQKLWYAILEAQTETGN 399 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616 P++ +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L ++ Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ S Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA + + E + A++AS ELA+ G YSS++GS QG+ D + Sbjct: 520 PEAKLLNIQIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP------ 573 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 574 ----TDLWDWDSLKSDISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L LW + M + + GSI N+ IP D+K ++ T +EI + Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNVPNIPADIKALYKTVWEISQRTI 689 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910 ++ A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ + Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749 Query: 911 VEKSTLKGVD 920 V++ LK VD Sbjct: 750 VDQEQLKIVD 759 >gi|68481362|ref|XP_715320.1| hypothetical protein CaO19.5779 [Candida albicans SC5314] gi|68481493|ref|XP_715255.1| hypothetical protein CaO19.13201 [Candida albicans SC5314] gi|7271006|emb|CAB77640.1| ribonucleotide reductase large subunit [Candida albicans] gi|46436871|gb|EAK96226.1| hypothetical protein CaO19.13201 [Candida albicans SC5314] gi|46436939|gb|EAK96293.1| hypothetical protein CaO19.5779 [Candida albicans SC5314] Length = 854 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 285/765 (37%), Positives = 434/765 (56%), Gaps = 45/765 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ + T+ P+YA + AR Sbjct: 22 VQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTIHPDYAVLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ T Y K K + EY + G+ + ++ + D + + Sbjct: 82 AVSNLHKQT-TKQYSKVSKDLY--------EYINP--KTGLHSPMISKETYDIIMEHEDE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ + R + Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDI---PRVI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S F +P LFN+GT PQ+SSCFL + DD + GI+ L+ A+++K +GG Sbjct: 188 ETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L D+YG EF Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YE++ +RG + I A LW +L ETG P++ +KD CN +S Q+++G+ Sbjct: 368 EELYTKYEKE-NRGR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGI 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634 + SSNLC EI S+ +E AVCNL SI L + N++ +++DKL + R L+ Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQVTKVVTRNLNR 482 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID N + + +A++SN HR I LG+ G A L +P+ S EA E+ + E I A Sbjct: 483 VIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAA 542 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752 + AS+ELA+E GAY ++ GS QG+ D NR T WD LK+ Sbjct: 543 VEASIELAKEEGAYETYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQD 590 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + GMRNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 591 LAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +W++AM S + ++GSI + IPD++K ++ T +EI +I+ A+ R +IDQ+QS Sbjct: 651 LGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ +P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755 >gi|9627579|ref|NP_042102.1| hypothetical protein VARVgp058 [Variola virus] gi|417658|sp|P32984|RIR1_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|62335|emb|CAA47558.1| ribonucleotide reductase (large subunit) [Variola virus] gi|297239|emb|CAA48999.1| K4L [Variola virus] gi|438976|gb|AAA60806.1| homolog of vaccinia virus CDS I4L (ribonucleotide reductase, large subunit); putative [Variola major virus] gi|544814|gb|AAB29605.1| K4L product [variola virus VAR, India-1967, Peptide, 771 aa] gi|94483704|gb|ABF22821.1| ribonucleotide reductase large subunit [Variola virus] gi|94484521|gb|ABF23634.1| ribonucleotide reductase large subunit [Variola virus] gi|94484719|gb|ABF23831.1| ribonucleotide reductase large subunit [Variola virus] gi|94484917|gb|ABF24028.1| ribonucleotide reductase large subunit [Variola virus] gi|94485115|gb|ABF24225.1| ribonucleotide reductase large subunit [Variola virus] gi|94485722|gb|ABF24829.1| ribonucleotide reductase large subunit [Variola virus] gi|94486126|gb|ABF25231.1| ribonucleotide reductase large subunit [Variola virus] gi|94486329|gb|ABF25433.1| ribonucleotide reductase large subunit [Variola virus] gi|94487140|gb|ABF26240.1| ribonucleotide reductase large subunit [Variola virus] gi|94487342|gb|ABF26441.1| ribonucleotide reductase large subunit [Variola virus] gi|94487546|gb|ABF26644.1| ribonucleotide reductase large subunit [Variola virus] gi|94487951|gb|ABF27047.1| ribonucleotide reductase large subunit [Variola virus] gi|94488554|gb|ABF27647.1| ribonucleotide reductase large subunit [Variola virus] gi|94488755|gb|ABF27847.1| ribonucleotide reductase large subunit [Variola virus] gi|94488956|gb|ABF28047.1| ribonucleotide reductase large subunit [Variola virus] gi|94489155|gb|ABF28245.1| ribonucleotide reductase large subunit [Variola virus] gi|94489355|gb|ABF28444.1| ribonucleotide reductase large subunit [Variola virus] gi|94489557|gb|ABF28645.1| ribonucleotide reductase large subunit [Variola virus] gi|94490166|gb|ABF29251.1| ribonucleotide reductase large subunit [Variola virus] gi|109724101|gb|ABG43227.1| ribonucleotide reductase large subunit [Variola virus] gi|109724305|gb|ABG43430.1| ribonucleotide reductase large subunit [Variola virus] gi|109724712|gb|ABG43835.1| ribonucleotide reductase large subunit [Variola virus] gi|109724915|gb|ABG44037.1| ribonucleotide reductase large subunit [Variola virus] gi|109725119|gb|ABG44240.1| ribonucleotide reductase large subunit [Variola virus] gi|109725324|gb|ABG44444.1| ribonucleotide reductase large subunit [Variola virus] gi|109725527|gb|ABG44646.1| ribonucleotide reductase large subunit [Variola virus] gi|109725731|gb|ABG44849.1| ribonucleotide reductase large subunit [Variola virus] gi|109725934|gb|ABG45051.1| ribonucleotide reductase large subunit [Variola virus] gi|109726341|gb|ABG45456.1| ribonucleotide reductase large subunit [Variola virus] gi|109726544|gb|ABG45658.1| ribonucleotide reductase large subunit [Variola virus] gi|745175|prf||2015436BP K4L gene Length = 771 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|114635721|ref|XP_001159888.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 2 [Pan troglodytes] Length = 695 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 265/661 (40%), Positives = 403/661 (60%), Gaps = 25/661 (3%) Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G + ++ +S +D L L + + Y+RDF++ Y G + L Y L ING E PQ Sbjct: 13 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRV++G+ ++ + A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD Sbjct: 73 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 189 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616 P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + + Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +S Sbjct: 479 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI + Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 ++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + T Sbjct: 595 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654 Query: 916 L 916 L Sbjct: 655 L 655 >gi|109724507|gb|ABG43631.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 FDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDEEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|296827688|ref|XP_002851208.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma otae CBS 113480] gi|238838762|gb|EEQ28424.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma otae CBS 113480] Length = 874 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/772 (36%), Positives = 435/772 (56%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +K+ +K + LY Y+ + G A ++ E + + + Sbjct: 82 AVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNGRPAPMISEKTREIVMKHA 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF ++Y G + L Y L NG E PQ MRVA+G+ ++ EK Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGIHGEDVEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 +E YNL+S +F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K + Sbjct: 186 VIESYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG+ Sbjct: 306 ADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGLADVYGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGNPFMLYKDSCNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI ++ +E AVCNL SI L ++D+ KL + V+ L+ Sbjct: 421 GTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVKNLNR 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + +E+A++SN HR I +G+ G A L +P+ SPEA + + E + A Sbjct: 481 IIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNIQIFETLYHAA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS ELA+ G YSS++GS QG+ D + T WD LK + Sbjct: 541 LTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP----------TDLWDWDALKTEIS 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 KHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK VD Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVVD 762 >gi|94484317|gb|ABF23431.1| ribonucleotide reductase large subunit [Variola virus] gi|94489961|gb|ABF29047.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|297797920|ref|XP_002866844.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312680|gb|EFH43103.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 807 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 279/763 (36%), Positives = 429/763 (56%), Gaps = 55/763 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIAVSNL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYL 296 +K+ ++ +Y R G+ + L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETVRDMYSHVNER---SGLASPLIAADVYEIIMKHATRLDSEIIYDRDFEYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRV++G+ ++ + A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVSVGIHKEDIDS---AIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFNSGT QLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNSGTPRAQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ +FL+LRKN G + Sbjct: 264 GTNGASNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFDFLELRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV + W+LF P+E L D +G EFE Y YE Q Sbjct: 324 RARDLFYGLWIPDLFMERVQTDGQWSLFCPNEAPGLADCWGAEFERLYTQYENQG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++LT ETG P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNSKSNQQNLGTIKSSNLCTEILEYTSP 438 Query: 595 EETAVCNLGSINLLAHFANNQ--------------------FDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L N FD+DKLA T L+ Sbjct: 439 TETAVCNLASIALPRFVRENDIPLDSHPSKIVGSLDSKNRYFDFDKLAEVTATVTVNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E AK SN HR IG+G+ G A LL +P+ SPE+ ++ + E I +HA Sbjct: 499 IIDVNHYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPESQQLNKDIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + +S E+A + G Y +++GS +G+ D ++ + R W L+ + Sbjct: 559 LKSSSEIATKEGTYETYQGSPVSKGILQPDMWNVIP----------SDRWDWAALRDMIS 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L Sbjct: 609 KNGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + + + +GSI N++ IPDDLK I+ T +EI +++ A+ R +IDQ+QSLN Sbjct: 669 LWSPTLKNKIIHENGSIVNVKEIPDDLKAIYRTVWEIKQRTVVDMAADRGCFIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++++P+ KL ++ AW GLKT YYLRSRSA K T+ Sbjct: 729 IHMEKPNFAKLTSLHFYAWKKGLKTGMYYLRSRSAADAIKFTV 771 >gi|171690020|ref|XP_001909942.1| hypothetical protein [Podospora anserina S mat+] gi|170944965|emb|CAP71076.1| unnamed protein product [Podospora anserina S mat+] Length = 901 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/759 (37%), Positives = 427/759 (56%), Gaps = 51/759 (6%) Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ + L+ ++ + P+YA + AR Sbjct: 16 VSRLCYGLDMDHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 75 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ V++ +Y P+ M +E + + H+ + Sbjct: 76 AVSNLHKQTKKQWSSVVSDLYHYVNPKNGRPSPM----------IAKETYECVMRHKDDL 125 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 D +VY +RDF ++Y G + L Y L +NG +E PQ MRVA+G+ + E Sbjct: 126 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDDIE 178 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 R +E Y +SS F ++PTLFN+GT QLSSCFL + DD + GI+ L+ AM+ Sbjct: 179 ---RVIETYTYMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIDGIYDTLKTCAMI 235 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YL Sbjct: 236 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 295 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Sbjct: 296 EPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMCPNECPGLAD 355 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG+EFE YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Sbjct: 356 CYGEEFEALYEKYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 410 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630 QQ++GV+ SSNLCTEI S+ +E AVCNL S+ L + +FD+ KL + VR Sbjct: 411 QQNLGVIRSSNLCTEIVEYSAPDEVAVCNLASLALPQFVDYNEAKFDFKKLHEVTQIVVR 470 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +ID+N + +++A SN HR IGLG+ G A L +P+ S EA E+ + E I Sbjct: 471 NLNKIIDVNHYPVKEAYNSNMRHRPIGLGVQGLADAFLALRMPFESAEARELNKQIFETI 530 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A++ S +LA+E+G YS+++GS +G+ D + + WDELK Sbjct: 531 YHAALTMSCQLAKEQGTYSTYEGSPVSKGILQYDMWNV----------KPSDLWDWDELK 580 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 581 AEIKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDL 640 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 641 VDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQS 700 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 QSLN+++ +P+ K+ ++ W +GLKT YYLR+++A Sbjct: 701 QSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAA 739 >gi|68448942|gb|AAY97064.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|68449144|gb|AAY97265.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|300872688|gb|ADK39090.1| ribonucleotide reductase protein large subunit [Monkeypox virus] Length = 771 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 438/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|94486937|gb|ABF26038.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASTPIQFTL 750 >gi|94483909|gb|ABF23025.1| ribonucleotide reductase large subunit [Variola virus] gi|94484112|gb|ABF23227.1| ribonucleotide reductase large subunit [Variola virus] gi|94485317|gb|ABF24426.1| ribonucleotide reductase large subunit [Variola virus] gi|94485520|gb|ABF24628.1| ribonucleotide reductase large subunit [Variola virus] gi|94487747|gb|ABF26844.1| ribonucleotide reductase large subunit [Variola virus] gi|94488154|gb|ABF27249.1| ribonucleotide reductase large subunit [Variola virus] gi|94488354|gb|ABF27448.1| ribonucleotide reductase large subunit [Variola virus] gi|109726138|gb|ABG45254.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKQVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|94486532|gb|ABF25635.1| ribonucleotide reductase large subunit [Variola virus] gi|94486734|gb|ABF25836.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|238882110|gb|EEQ45748.1| ribonucleoside-diphosphate reductase large chain [Candida albicans WO-1] Length = 854 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 285/765 (37%), Positives = 434/765 (56%), Gaps = 45/765 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ + T+ P+YA + AR Sbjct: 22 VQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTIHPDYAVLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ T Y K K + EY + G+ + ++ + D + + Sbjct: 82 AVSNLHKQT-TKQYSKVSKDLY--------EYINP--KTGLHSPMISKETYDIIMEHEDE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ + R + Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDI---PRVI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S F +P LFN+GT PQ+SSCFL + DD + GI+ L+ A+++K +GG Sbjct: 188 ETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L D+YG EF Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YE++ +RG + I A LW +L ETG P++ +KD CN +S Q+++G+ Sbjct: 368 EELYTKYEKE-NRGR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGI 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634 + SSNLC EI S+ +E AVCNL SI L + N++ +++DKL + R L+ Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQVTKVVTRNLNR 482 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID N + + +A++SN HR I LG+ G A L +P+ S EA E+ + E I A Sbjct: 483 VIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAA 542 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752 + AS+ELA+E GAY ++ GS QG+ D NR T WD LK+ Sbjct: 543 VEASIELAKEEGAYETYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQD 590 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + GMRNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 591 LAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +W++AM S + ++GSI + IPD++K ++ T +EI +I+ A+ R +IDQ+QS Sbjct: 651 LGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ +P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755 >gi|90660311|gb|ABD97425.1| ribonucleotide reductase large subunit [Cowpox virus] Length = 771 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L D++G Sbjct: 306 SDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTQYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|332211481|ref|XP_003254847.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 3 [Nomascus leucogenys] Length = 695 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 265/661 (40%), Positives = 402/661 (60%), Gaps = 25/661 (3%) Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G + ++ +S +D L L + + Y+RDF++ Y G + L Y L ING E PQ Sbjct: 13 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRV++G+ ++ + A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD Sbjct: 73 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 189 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616 P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + + Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +S Sbjct: 479 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI + Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 + A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + T Sbjct: 595 LRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654 Query: 916 L 916 L Sbjct: 655 L 655 >gi|157736291|ref|YP_001488974.1| ribonucleotide-diphosphate reductase subunit alpha [Arcobacter butzleri RM4018] gi|157698145|gb|ABV66305.1| ribonucleoside-diphosphate reductase, alpha chain [Arcobacter butzleri RM4018] Length = 794 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 303/809 (37%), Positives = 438/809 (54%), Gaps = 113/809 (13%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK----EPNY 216 +++ + EA GL+ VS + + + DG+ D++ ALI +T +EK PN+ Sbjct: 19 KIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI---KTAVEKIDIDVPNW 75 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESM 273 V AR L L Y + ATH + E +C YI+ G++A L S+ Sbjct: 76 TFVAARLFLFDL--------YHRVGIATH----GVKGEAYCHLKDYIKFGIEAGRLIPSI 123 Query: 274 MD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALK 331 D +DL L + RD F YLG++ LYDRY + + IE+PQ FM +AM LA Sbjct: 124 ADGYDLDELNAYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQMFMAIAMFLAQN 183 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391 E +K+ +A EFY+++S F M +TPTL N+ T QLSSC++ + PD++ GIF +E A Sbjct: 184 EKDKQSKAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMA 243 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 +L+KY GG+G DW +R LG I + G +PFLK+ ND A+AV+Q G RKGA+ Y Sbjct: 244 LLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQLGTRKGAIAVY 303 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 LE WH+D+ +F+DL+KN+G++RRR HD+ A WI DLFM+RV +++ WTLF P EV DL Sbjct: 304 LEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWTLFDPYEVRDLS 363 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + +G EF+ Y YE E ++ A LW+K+LT FE G P++ +KD N + Sbjct: 364 ETFGDEFKAKYVAYEND----ETITKDRMKAKDLWKKILTSYFEVGSPFLCWKDTANRTN 419 Query: 572 PQQHVGVVHSSNLCTEITLN-----------------SSSEET--------------AVC 600 P HVG + SSNLCTEI N S+ EE+ V Sbjct: 420 PNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVDGGVTKKANKVS 479 Query: 601 NLGSINLLAHF--ANNQFDYD----KLAS--------------TIRTAVRVLDNVIDINC 640 L S+N F + D D LAS + TA+R+LDNVID+N Sbjct: 480 ALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAIRMLDNVIDLNF 539 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + K K +N R+IGLG+MG L + + S E + D+ ME IS++ I +S + Sbjct: 540 YPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEAISYNTIKSSSD 599 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA E+G Y +F+GS W +G+ P D + + TS WD L+++VK GMRN Sbjct: 600 LASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDLFDTS-YDWDVLREKVKKDGMRN 658 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 659 GYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------------------ 700 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LD 878 + R+ + + AFEID + +I++A+ RQKWIDQ QS N++ LD Sbjct: 701 -------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLD 747 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + SGK L IY AW +GLK+TYYLRS+S Sbjct: 748 KASGKYLHEIYTLAWKLGLKSTYYLRSQS 776 >gi|1143665|emb|CAA53832.1| unnamed protein product [Variola virus] gi|5830619|emb|CAB54658.1| L4L protein [Variola minor virus] Length = 771 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL SI L + QFD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLAYAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|237841871|ref|XP_002370233.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii ME49] gi|211967897|gb|EEB03093.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii ME49] gi|221482702|gb|EEE21040.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii GT1] gi|221503104|gb|EEE28810.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii VEG] Length = 877 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 292/773 (37%), Positives = 443/773 (57%), Gaps = 53/773 (6%) Query: 166 VEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 +E+ GL + +++ N MY G+ S+L+ +S + P+++++ AR Sbjct: 81 IEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAAQTSAYMAASHPDFSRLAARIA 140 Query: 225 LEKLRREV----LTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF--- 276 ++ L + LT + + Y+++ G +A+L+ + +F Sbjct: 141 IDNLHKNTTDNFLTVI-----------------DQLHGYVDKLGREAKLVSTEVYEFVRE 183 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L L Y RDF ++Y G + L Y L I+ +E PQ MRVA G+ + EK Sbjct: 184 NEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMRVACGIHCGDVEK- 242 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E Y L+S F +TPTLFN+GT PQ+SSCFL T+ +D + GIF L++ A+++K Sbjct: 243 --AIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDGIFSTLKQCALISK 300 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GGLG T +R ++I GTNG S G++P L+V ND A V+QGG KRKG++ YLE Sbjct: 301 TAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGGGKRKGSLAIYLEP 360 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV +FLD++KN G + RR D+ A WIPDLFM+RV NAGWTL P+E L +++ Sbjct: 361 WHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMCPNECPGLTEVW 420 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EF+ YE YER+ RG + I A LW +L ETG P++ +KD CN +S Q+ Sbjct: 421 GDEFKELYERYEREG-RGR----KTIPAQHLWFAILQAQIETGTPYMLYKDACNRKSNQK 475 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRV 631 ++G + SNLCTE+ +S +E AVCNL S++L F + + FDY+ L ++ R Sbjct: 476 NLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSL-PKFVDRESRTFDYEHLKRIVKVMTRN 534 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ VID N + + +AKKSN HR +GLG+ G A LL P+ SPEA + E I Sbjct: 535 LNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARVLNRNIFECIY 594 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A+ AS ELA E G Y++++GS QG+ D G+ + WD L++ Sbjct: 595 FAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTPS---------SGLCDWDGLRE 645 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++K G+RNS ++ PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L Sbjct: 646 KIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLL 705 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +RDLW E + L H+GS+ N++ IPDDLK ++ T +EI +++ A R +IDQ+ Sbjct: 706 ERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRAPFIDQSH 765 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 SLN+++ P+ KL ++ W GLKT YYLR+++A K T VD +L Sbjct: 766 SLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT---VDSQL 815 >gi|294948956|ref|XP_002785979.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|294948958|ref|XP_002785980.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|239900087|gb|EER17775.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|239900088|gb|EER17776.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] Length = 792 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 276/747 (36%), Positives = 428/747 (57%), Gaps = 41/747 (5%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + + + +Y G++ ++L++ + + + P+++ + AR + L Sbjct: 41 ITQKVAEGIYPGVTTTELDSLAAETCAYMSQVHPDFSTLAARIAVSNL------------ 88 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLG 297 K TH + E + G A L+ E + + + L + YERDF ++Y G Sbjct: 89 HKNTHEKFSDTVTELYQITDGRGRHAPLVSEEVYNIVMANAEKLDKAIDYERDFDYDYFG 148 Query: 298 LQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 + L Y L + S IE PQ MRVA+G+ + + A+E Y+L+S+ F +T Sbjct: 149 FKTLERSYLLKRPSDKSCIERPQHMIMRVAVGIHGDDVDA---AIETYDLMSTRVFTHAT 205 Query: 356 PTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFNSGT HPQ+SSCFL ++ D + GI+ L++ AM++K +GG+G T +R ++I Sbjct: 206 PTLFNSGTPHPQMSSCFLLSMKGDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYI 265 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S G++P L+V NDTA V+QGG KRKG+ YLE WH DV EFLDL+KN G + Sbjct: 266 RGTNGFSNGIVPMLRVFNDTARYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEE 325 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 +R D+ A WIPDLFMKRV N WTLF P+E L D YG EFE YE YE+ Sbjct: 326 QRARDLFYALWIPDLFMKRVMSNGDWTLFCPNEAPGLQDTYGDEFEALYEKYEKDG---- 381 Query: 534 IKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 + RK + A +LW K+L ETG P++ +KD N +S Q+++G + SNLC EI + Sbjct: 382 --IGRKTVKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYT 439 Query: 593 SSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 S +E AVCNL SI N+ +D+D+L + R L+ VID N + + +A++SN Sbjct: 440 SPDEVAVCNLASIALNMFVDKKTRTYDFDRLHRVTKVVTRNLNKVIDRNYYPVPEARRSN 499 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A L+ PY SPEA+++ +E E I A AS+ELA++ G Y + Sbjct: 500 MRHRPIGIGVQGLADAFLLMRFPYESPEALKLNNEIFETIYHAACEASMELAKKDGPYET 559 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F+GS +G+ D + + + R W+ LK+ +K GMRNS +A PTA Sbjct: 560 FEGSPASEGILQFDMWDVTPD---------SGRWDWNSLKEEIKKNGMRNSLLIAPMPTA 610 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + A I G +++ +P QN+YV+ ++G+F VN LV++L + LW++ + + GS Sbjct: 611 STAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRQKGS 670 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 + +E IP ++++++ T +EI +++ A+ R +IDQ+QSLN+++ + KL ++ Sbjct: 671 VQGVEEIPKEVQELYKTVWEIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHF 730 Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTL 916 W +GLKT YYLR+++A + TL Sbjct: 731 YGWKLGLKTGQYYLRTKAAADAIQFTL 757 >gi|95007128|emb|CAJ20349.1| ribonucleoside-diphosphate reductase, large chain [Toxoplasma gondii RH] Length = 855 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 292/773 (37%), Positives = 443/773 (57%), Gaps = 53/773 (6%) Query: 166 VEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 +E+ GL + +++ N MY G+ S+L+ +S + P+++++ AR Sbjct: 59 IEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAAQTSAYMAASHPDFSRLAARIA 118 Query: 225 LEKLRREV----LTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF--- 276 ++ L + LT + + Y+++ G +A+L+ + +F Sbjct: 119 IDNLHKNTTDNFLTVI-----------------DQLHGYVDKLGREAKLVSTEVYEFVRE 161 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L L Y RDF ++Y G + L Y L I+ +E PQ MRVA G+ + EK Sbjct: 162 NEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMRVACGIHCGDVEK- 220 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E Y L+S F +TPTLFN+GT PQ+SSCFL T+ +D + GIF L++ A+++K Sbjct: 221 --AIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDGIFSTLKQCALISK 278 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GGLG T +R ++I GTNG S G++P L+V ND A V+QGG KRKG++ YLE Sbjct: 279 TAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGGGKRKGSLAIYLEP 338 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV +FLD++KN G + RR D+ A WIPDLFM+RV NAGWTL P+E L +++ Sbjct: 339 WHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMCPNECPGLTEVW 398 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EF+ YE YER+ RG + I A LW +L ETG P++ +KD CN +S Q+ Sbjct: 399 GDEFKELYERYEREG-RGR----KTIPAQHLWFAILQAQIETGTPYMLYKDACNRKSNQK 453 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRV 631 ++G + SNLCTE+ +S +E AVCNL S++L F + + FDY+ L ++ R Sbjct: 454 NLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSL-PKFVDRESRTFDYEHLKRIVKVMTRN 512 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ VID N + + +AKKSN HR +GLG+ G A LL P+ SPEA + E I Sbjct: 513 LNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARVLNRNIFECIY 572 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A+ AS ELA E G Y++++GS QG+ D G+ + WD L++ Sbjct: 573 FAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTPS---------SGLCDWDGLRE 623 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++K G+RNS ++ PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L Sbjct: 624 KIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLL 683 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +RDLW E + L H+GS+ N++ IPDDLK ++ T +EI +++ A R +IDQ+ Sbjct: 684 ERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRAPFIDQSH 743 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923 SLN+++ P+ KL ++ W GLKT YYLR+++A K T VD +L Sbjct: 744 SLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT---VDSQL 793 >gi|313844113|ref|YP_004061776.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1] gi|312599498|gb|ADQ91520.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1] Length = 747 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 278/738 (37%), Positives = 420/738 (56%), Gaps = 43/738 (5%) Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 + S V + ++YDG++ +++T +I +P+Y + R Sbjct: 31 EKCDSSKVAQQVASSLYDGITAQEIDTLSAEICVGMITSDPDYETLATRI---------- 80 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293 T +Q + P F +++ KA ++ E + + +D+ +RD+ F Sbjct: 81 ----------TASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AGRVRDDIDTKRDYDF 129 Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 Y GL+ L Y ++G +E PQ FMRVA+G+ ++ + +E Y+ +S F+ Sbjct: 130 GYFGLKTLEKSYLQRLDGVLMETPQYMFMRVAIGIHGEDIDS---VLETYDKMSRGMFIH 186 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTLFN+GT PQ+SSCFL +D + GI+G L E A ++K++GG+G VR + Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKEDSINGIYGTLTECAQISKWAGGIGMHIHDVRANKS 246 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I GTNG+S G+IP L+V N TA VNQ G+RKG++ YLE WH D+ EFL+LR N GD+ Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMEFLELRLNQGDE 306 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R D+ +A WIPDLFMKRV ++ W+LF PD+ L D G+EFE Y YE ++ Sbjct: 307 EARCRDLFSALWIPDLFMKRVEESGNWSLFCPDKAPGLSDAVGEEFEALYTKYEEES--- 363 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 + + A +W+ +L ETG P++ +KD CN +S Q+++GV+ SSNLCTEI + Sbjct: 364 --RATATVPAADVWKAILKSQTETGTPYMLYKDACNQKSNQKNLGVIKSSNLCTEILEFT 421 Query: 593 SSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 +ETAVCNL SI L + FDY+KL +T + L+ VID N + +E A+KSN Sbjct: 422 DKDETAVCNLASIALPKYVDPETKTFDYEKLHEVTKTVTKNLNRVIDRNFYPVETARKSN 481 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IGLG+ G L + S EA EI E + A+ AS ELA+ G Y + Sbjct: 482 MRHRPIGLGVQGLADVFILCRHAFDSDEAKEINARIFETMYHAALEASSELAEVDGPYET 541 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F+GS QGV D + E +L + WD LK+R+K G+RNS MA PTA Sbjct: 542 FEGSPASQGVLQFD----MWEGETKLHYD------WDALKERIKEKGLRNSLLMAPMPTA 591 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + A I G ++ +P N+Y++ ++G+F +VN LV++LK+ LW + M + GS Sbjct: 592 STAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVDDLKEIGLWSKDMKDLMVKAGGS 651 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I NI IPD++KK++ T +EI +I+ A+ R ++IDQ+QS+NL+++ P+ KL ++ Sbjct: 652 IQNIVDIPDEIKKLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLFMESPTMSKLSSMHM 711 Query: 891 QAWLMGLKT-TYYLRSRS 907 +W GLKT YYLRS++ Sbjct: 712 YSWKKGLKTGMYYLRSKA 729 >gi|311748426|ref|ZP_07722211.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus sp. PR1] gi|126576939|gb|EAZ81187.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus sp. PR1] Length = 799 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 297/834 (35%), Positives = 459/834 (55%), Gaps = 66/834 (7%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG S ++ +E C L +V+ K++ +YDG++ S+L+ Sbjct: 3 VIKRDGRRESVRFDKITARIENLCYELDPKFIQPIEVAKKVI-----DGLYDGVTTSELD 57 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +L K P+YA + AR ++ ++K ++ + M+ LY Y Sbjct: 58 NLAAEVCASLTVKHPDYAILAARI--------AISNLHKTTSQSFSNTMKRLYT-----Y 104 Query: 260 I--EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 I + G A L+ + + L + Y+RDF ++Y G + L Y + ++G + Sbjct: 105 INPKTGGNASLIDPEVYGVVKKNAAKLDAIIDYKRDFGYDYFGYKTLERSYLIRLDGKVV 164 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ ++ + AVE Y+LLS F +TPTLFN+GT PQLSSCFL Sbjct: 165 ERPQHMLMRVAVGIHKEDIDA---AVETYHLLSEKWFTHATPTLFNAGTPKPQLSSCFLL 221 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ DD + GI+ L++ A +++ +GG+G VR G++I GTNG S G++P L+ + Sbjct: 222 TMKDDSIDGIYDTLKQCAKISQSAGGIGLSIHHVRAKGSYIKGTNGVSNGIVPMLRNFDM 281 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKG+ YLE WH DV++FLDL++N G + R D+ A WI DLFMKR Sbjct: 282 TARYVDQGGGKRKGSFAIYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKR 341 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V QN W+LF P+E L D YG+EFE YE YE++ E + A LW ++L Sbjct: 342 VEQNETWSLFCPNEAPGLSDCYGEEFERLYEKYEKEGRARET-----VKAQELWFEILES 396 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD N +S QQ++G + SSNLCTEI ++ +E AVCNL S+ L Sbjct: 397 QIETGTPYMLYKDAANKKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPKFVR 456 Query: 613 NNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 FD+ KL + A R L+ VID+N + +++A++SN HR IGLG+ G A Sbjct: 457 TGPDGKLFFDHQKLYEITKVATRNLNKVIDVNYYPVDEARRSNFRHRPIGLGVQGLADAF 516 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L +P+ S EA + ++ E I + A+ S+ELA+ G Y +++GS +G+ D G Sbjct: 517 IMLRMPFESAEAKGLNEDIFETIYYAAVETSMELAKVEGTYETYEGSPASKGILQFDMWG 576 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + ++ R W ELK++VK +G+RNS +A PTA+ + I G ++ +P Sbjct: 577 VTP---------KSERWNWTELKEKVKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTT 627 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 N+Y + +SG+F VVN L+ +L + LWD+ M + L +GS+ ++ +P ++K ++ T Sbjct: 628 NIYTRRTLSGEFIVVNKHLMKDLIRLGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKT 687 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 +EI +I+ A+ R +I Q+QS+N++L +P+ KL ++ AW GLKT YYLRS+ Sbjct: 688 VWEISQKVIIDLAADRGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQ 747 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDP-------NSSTHSLGIPSSCTSDTECEVC 953 +A S K TL K N P D S I S CE+C Sbjct: 748 AAASAIKFTLD----KSNLEPKVDKAMQEEIDAKSLKQDAISCSLDDPDGCEMC 797 >gi|17974978|ref|NP_536492.1| I4L [Monkeypox virus Zaire-96-I-16] gi|17529845|gb|AAL40523.1|AF380138_65 I4L [Monkeypox virus Zaire-96-I-16] Length = 771 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G +I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGGYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPRLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIAQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|219110871|ref|XP_002177187.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411722|gb|EEC51650.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 814 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 293/820 (35%), Positives = 452/820 (55%), Gaps = 58/820 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G S + ++ V + C GL + V I+ + + +Y G++ S+L+ Sbjct: 3 MYVLKRNGRRESVHFDKITSRVSKLCYGLDAKHVDPVIISQKVIQGVYPGVTTSELDELA 62 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV---------YKKPQKATHHEMQCLYP 253 ++ + + P+Y+ + AR + L + + YK P+ E L Sbjct: 63 AQTAASFATQHPDYSILAARVSVSNLHKMTIARFSDLVEVFYNYKHPKTG---EPASLIS 119 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E + +++ H+ +D +V+ RDF ++Y G + L Y L ++G Sbjct: 120 EEVYQIVQK-------HKDELDGAIVH-------ARDFEYDYFGFKTLEKSYLLKVDGKI 165 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E PQ MRV++G+ + R +E YN LS +F +TPTLFN+GT PQ+SSCFL Sbjct: 166 AERPQLMLMRVSVGI---HGDDIPRVIETYNFLSERYFTHATPTLFNAGTNMPQMSSCFL 222 Query: 374 TTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 T+ +D + GI+ L+ A+++KY+GG+G VR ++I GTNG S G++P L+V N Sbjct: 223 MTMKEDSIDGIYDTLKNCAVISKYAGGIGLAIHNVRASQSYIRGTNGSSNGIVPMLRVFN 282 Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 +TA V+QGG KRKG++ YLE WH DV FLDLRKN G++ R D+ A W+PDLFMK Sbjct: 283 NTARYVDQGGGKRKGSIAIYLEPWHADVFAFLDLRKNHGNESDRARDLFFAMWVPDLFMK 342 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV N W+L P+E L D +G EFE YE YER+ KV + I A LW +L Sbjct: 343 RVKDNGTWSLLCPNECPGLADCFGDEFEALYERYEREG-----KVRQTIKAQQLWFAILD 397 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG P++ FKD CN +S QQ++G + SNLCTEI ++ +E AVCNL SI+L Sbjct: 398 SQVETGTPYMLFKDHCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEAAVCNLASISLSKLV 457 Query: 612 ANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 Q FD++KL + L+ +ID N + IE+A++SN HR IG+G+ G Sbjct: 458 VPGQYGQGGSFDFEKLREVSGVVTKNLNRIIDRNFYPIEEARRSNMRHRPIGIGVQGLAD 517 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 +L IP+ SPEA ++ + E I F A +AS +LA G Y S+ GS +G D Sbjct: 518 CFQMLRIPFDSPEARKLNTDIFETIYFGACTASCDLAAVDGHYESYPGSPSSKGQLQFD- 576 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 L V+ ++R W LK ++ G+RNS +A PTA+ A I G ++S +P Sbjct: 577 ---LWNVQP------SNRWDWASLKAKIAEHGIRNSLLVAPMPTASTAQILGNNESTEPF 627 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N+Y + ++G+FTVVN L+ EL R +W E + + + +GSI N+ IP ++++I Sbjct: 628 TSNMYNRRVLAGEFTVVNKHLLRELTARGIWTENVRNRIIAENGSIQNVPEIPVEIREIF 687 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904 T +EI +++ A+ R +I Q+QSLN+++ +P+ KKL ++ AW GLKT YYLR Sbjct: 688 KTVWEIPQRAILDMAADRAPYICQSQSLNVHIADPNSKKLTSMHFYAWQKGLKTGMYYLR 747 Query: 905 SRSATSVEKSTL---KGVDGKLNAVPVTDPNSSTHSLGIP 941 +R K T+ + V K+ V + D +S++ + P Sbjct: 748 TRPKADAIKFTVDQEQLVSNKMKEVKLVDKENSSNMVTPP 787 >gi|17555242|ref|NP_499039.1| RiboNucleotide Reductase family member (rnr-1) [Caenorhabditis elegans] gi|417657|sp|Q03604|RIR1_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|3880121|emb|CAA79574.1| C. elegans protein T23G5.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 788 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 279/741 (37%), Positives = 430/741 (58%), Gaps = 41/741 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ ++ ++ + P YA + AR + L +KK K M Sbjct: 53 LYKGVTTVELDNLAAETAASMTTQHPEYALLAARIAVSNL--------HKKTNKVFSEVM 104 Query: 249 QCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + L+ E+ + G A ++ + ++++ + L + + Y+RD+++ Y G + L Y Sbjct: 105 KTLH-EF--HHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSY 161 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN +E PQ MRV++G+ + A+E YNL+S + ++PTLFNSGT Sbjct: 162 LLKINKEIVERPQQMLMRVSIGI---HGDDITSAIETYNLMSERYMTHASPTLFNSGTCR 218 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL T+ +D + GI+ L++ A+++K +GG+G + +R G+ I GTNG S G+ Sbjct: 219 PQMSSCFLLTMSEDSILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGL 278 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 IP L+V N+TA V+QGG KR GA YLE WH D+ EF+ LRKNTG + R D+ A Sbjct: 279 IPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLAL 338 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV ++ W+L P E L D +G+EFE Y YE E +V + + A Sbjct: 339 WIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGEEFEALYAKYE-----AEGRVRKTVKAR 393 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +++ ETG P+IT+KD N +S QQ++G + SNLCTEI S+ +E AVCNL Sbjct: 394 KLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLA 453 Query: 604 SINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 SI L + +FD+ KLA + R L+ +ID+N + +E+A+ SN HR IGLG+ G Sbjct: 454 SIALNRYVTPEKKFDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQG 513 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L+ P+ S EA ++ E I + A+ AS ELA+ G YS+++GS +G Sbjct: 514 LADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQ 573 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D G+ T + W L+K++ G+RNS MA PTA+ A I G ++SI Sbjct: 574 FDMWGVTP----------TDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESI 623 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y + +SGDF +VN ++ +L +R LW + M + L ++GSI NI+ IP D+K Sbjct: 624 EPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIK 683 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 +++ T +EI +IE A+ R +IDQ+QSLN+++ +PS + ++ W GLKT Y Sbjct: 684 ELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMY 743 Query: 902 YLRSRSAT-----SVEKSTLK 917 YLR++ A +V+K+ LK Sbjct: 744 YLRTKPAVNAVQFTVDKNALK 764 >gi|315928436|gb|EFV07748.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 698 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/715 (39%), Positives = 403/715 (56%), Gaps = 97/715 (13%) Query: 255 YFCRYIEEGVK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GS 312 + C Y E+G K R+L +DL L +K ERD F YLG++ LYDRY + + G Sbjct: 6 HLCEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGM 65 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE+PQ FM +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC+ Sbjct: 66 PIELPQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCY 125 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + + PD++ GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ N Sbjct: 126 IGSTPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN 185 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D AVAV+Q G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKR Sbjct: 186 DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKR 245 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLT 551 V N WTLF P + +DL DLYG+ FE YE YE+ ++ EI + A LW+K+L Sbjct: 246 VRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILL 300 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------ 593 FETG P++ FKD N +P HVG++ SSNLCTEI N+ Sbjct: 301 NYFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHF 360 Query: 594 -SEETAVCNLG-----------------SINLLAHFANNQ---------------FDYDK 620 E+ V + G + ++ + N+ + + Sbjct: 361 DEEQKVVIDRGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKED 420 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 + + TA+R+LDNVID+N + K K +N RAIGLG+MG L I + S E + Sbjct: 421 IERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHL 480 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELA 737 DE ME ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ +R+ L Sbjct: 481 NKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF 540 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 S W +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG Sbjct: 541 --DQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSG 598 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 VV + + D + + A+E+D L+ Sbjct: 599 MIPVV-------------------------------VPNLSLDTWQYYTPAYELDQKILV 627 Query: 858 ESASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++A+ R KWIDQ QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 628 KAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 682 >gi|71027825|ref|XP_763556.1| ribonucleotide-diphosphate reductase large subunit [Theileria parva strain Muguga] gi|68350509|gb|EAN31273.1| ribonucleotide-diphosphate reductase large subunit, putative [Theileria parva] Length = 898 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/768 (37%), Positives = 431/768 (56%), Gaps = 42/768 (5%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 V + V MY G+ S+L+ + + P+Y+++ A ++ L + L Sbjct: 92 VDAPRVTQSVINGMYTGIRTSELDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLND 151 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFA 292 + + + H Y F A L+ + + +F + L ++ Y RDF Sbjct: 152 -FSEVIRTLHS-----YKHVF------NTNASLISDDVFEFVMANKDRLNAEIDYSRDFQ 199 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 ++Y G + L Y L NG +E PQ MRV+ G+ + E R ++ Y+L+S +F Sbjct: 200 YDYFGFKTLERSYLLKTNGKIVERPQHMIMRVSAGIHCGDLE---RTIQTYHLMSQRYFT 256 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTLFN+GTRHPQ+SSCFL + DD L GIF L + A ++K +GG+G +R G Sbjct: 257 HATPTLFNAGTRHPQMSSCFLLDMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASG 316 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTG 470 ++I GTNG S G++P LK+ N TA V+QGG KRKG+ YLE WH D+ + LDLRKN G Sbjct: 317 SYIRGTNGISNGIVPMLKIFNATAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHG 376 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + +R D+ A WIPDLFMKRV N WTL PDE LH+++G EFE Y YE+Q Sbjct: 377 AEDQRARDLFYALWIPDLFMKRVEANKNWTLMCPDECRGLHEVWGDEFERLYTQYEQQG- 435 Query: 531 RGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + RK I A LW +L ETG P++ +KD CN +S QQ++G + SSNLC EI Sbjct: 436 -----LGRKTIPAQKLWFAILQSQIETGTPYMLYKDACNAKSNQQNLGTIKSSNLCCEIV 490 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 ++ +E AVCNL S+ L F N Q FD+ KL R L+ VID N + +++A Sbjct: 491 QFTNKDEVAVCNLASV-ALPKFVNTQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQA 549 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + SN HR +G+G+ G L+ P+ S EA E+ E + + +S S++LA++ G Sbjct: 550 RVSNFRHRPMGVGVQGLADTFMLMRYPFESDEARELNKRIFETMYYACLSESIDLARQLG 609 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 Y +++GS +G+ D G A+V + L WD+LK ++ G+RNS +A Sbjct: 610 TYETYEGSPASKGLLQFDLWG--AKVDNSL-------WDWDKLKADLREHGLRNSLFIAP 660 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTA+ + I G ++S +P N+Y + +SG+F VVN L+N+L + LW+E M L Sbjct: 661 MPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLNDLIELGLWNETMKQKLIA 720 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 ++GS+ +I+ IP +K ++ T +EI +I+ A+ R +IDQ+QSLN+++++P+ KL Sbjct: 721 YNGSLKHIDEIPQHIKDLYKTVWEIKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLT 780 Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 ++ W GLKT YYLR++ AT K T+ +L A PNS Sbjct: 781 SMHFYGWKKGLKTGVYYLRTQPATDAIKFTVDASISQL-AKNRAKPNS 827 >gi|103488896|gb|ABF71875.1| ribonucleotide reductase large subunit [Neurospora crassa] Length = 923 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/779 (36%), Positives = 437/779 (56%), Gaps = 56/779 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ + L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ V++ +Y P+ H M + + E V + H+ Sbjct: 82 AVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPM-------IAKDVYECV---MRHKDEF 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 D +VY +RDF ++Y G + L Y L ++G E PQ MRVA+G+ + E Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 R +E YNL+S F ++PTLFN+GT PQLSSCFL + +D + GI+ L+ AM+ Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YL Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV E LDLRKN G + R D+ A WIPDLFMKRV QN WTL P E L D Sbjct: 302 EPWHADVFESLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 +YG EFE YE YE++ K + + A LW +L ETG+P++ +KD CN +S Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI S+ +E AVC L S+ L A + N +D+ KL + VR Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCYLASLALSAFIDYENASYDFKKLHEVTQVVVR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +IDIN + +++A SN HR IG+G+ G A L +P+ S A ++ + E I Sbjct: 477 NLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A++AS +LA+E+G Y++++GS QG+ D + T+ W LK Sbjct: 537 YHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----------TNLWDWTALK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 ADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + LW +AM + + GSI NI+ IP+D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 647 VEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923 QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A +V++ L+ D ++ Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALRATDDRV 765 >gi|242310744|ref|ZP_04809899.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pullorum MIT 98-5489] gi|239523142|gb|EEQ63008.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pullorum MIT 98-5489] Length = 788 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 308/828 (37%), Positives = 448/828 (54%), Gaps = 107/828 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L ++ DG + + +++ ++ GL+ VS + + + D ++ +++ LI Sbjct: 2 LTVIKRDGRIEPLDVTKIQKYTHDSVVGLEGVSQSELEVDAKLHFRDRITTQEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L +V K K Y+E G Sbjct: 62 TAVDKIDIDCPNWTFVAARLFLYDLYHKVNGFNGYKTLK---------------EYLEIG 106 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 K + + M + F+L L + +RD F YLG++ LYDRY L G+ IE+PQ F Sbjct: 107 EKENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGNPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + A +FY+LLS F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MGIAMFLAQNEDDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+KY GG+G D++ +RGLG+ I G + GV+PFLK+ ND A+AV+Q Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVVPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH D+ +F+D++KN+G++RRRTHD+ A WIPDLFMKRV ++ W L Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVAEDGLWNL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F +DL +LYG+ FE Y+ YE AD K I A LW+++LT FE G P++ Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYE--ADESIPK--ETIKAKDLWKRILTNYFEVGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------------C 600 FKD N +P H G++ SSNLCTEI N+ + + C Sbjct: 403 CFKDNANRANPNYHSGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIQDYEEYQEVLTDC 462 Query: 601 NL----------GSINLLAHFANNQFDYD------KLAS--------------TIRTAVR 630 + SIN F + + D LAS + A+R Sbjct: 463 GILKSSNKITSTDSINGKKVFISQRESVDGKTAVCNLASINLSKINTKEDIERVVPIAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S + +E DE ME I Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIEWGSQKHLEKIDEIMEMI 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AI+AS +LAQE+G Y+ F GSLW QG+FPID A+ + WD L+ Sbjct: 583 SYNAINASCKLAQEKGVYNDFAGSLWSQGIFPIDKANNEAKALVDRGGLFGFIYDWDSLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + VKT G+RN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE- 701 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 W+ + +A+EID +I++A+ RQKWIDQ Sbjct: 702 ----NWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731 Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QS N++ LD+ SGK L+ IY AW +GLK+TYYLRS+S + E ST+ Sbjct: 732 QSTNIFISLDKASGKYLNDIYSLAWRLGLKSTYYLRSQSVEA-ENSTM 778 >gi|327351615|gb|EGE80472.1| ribonucleoside-diphosphate reductase [Ajellomyces dermatitidis ATCC 18188] Length = 886 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/778 (36%), Positives = 433/778 (55%), Gaps = 60/778 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 + L ++ V+ +Y K Q+ Q Y E R+ +E Sbjct: 82 AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQGTY-ETVMRHADE---------- 130 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + Sbjct: 131 --------FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 EK +E YNL+S F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A Sbjct: 183 VEK---VIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D+YG+EF+ YE YE++ RG+ + I A LW +L ETG+P++ +KD CN + Sbjct: 360 ADVYGEEFDALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKK 414 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628 S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ KL + Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDFGKLHEVTQVV 474 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPEA ++ + E Sbjct: 475 VRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPEAKQLNIQIFE 534 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I +++AS ELA+ G YS+++GS QG+ D + T WD Sbjct: 535 TIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +ID Sbjct: 645 DLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 Q+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|194382560|dbj|BAG64450.1| unnamed protein product [Homo sapiens] Length = 695 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 264/661 (39%), Positives = 402/661 (60%), Gaps = 25/661 (3%) Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G + ++ +S +D L L + + Y+RDF++ Y G + L Y L ING E PQ Sbjct: 13 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRV++G+ ++ + A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD Sbjct: 73 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G + +R G++I GTNG G++P L+V N+TA V Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNPNGLVPMLRVYNNTARYV 189 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616 P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + + Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +S Sbjct: 479 ----TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI + Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 ++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + T Sbjct: 595 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654 Query: 916 L 916 L Sbjct: 655 L 655 >gi|320167592|gb|EFW44491.1| ribonucleotide reductase M1 subunit [Capsaspora owczarzaki ATCC 30864] Length = 785 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 292/772 (37%), Positives = 441/772 (57%), Gaps = 42/772 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V + C GL V + + + +Y G++ +L+T ++ L K P+YA + AR Sbjct: 22 VNKLCYGLNSDYVDAVEITQKVINGVYPGVTTVELDTLAAETAAYLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVY 280 + L +E +K M+ LY EY + + G A LL + + + + Sbjct: 82 AVSNLHKET--------KKQFSSVMRDLY-EY--QNPKTGKPAPLLADDVYEIIQRNADI 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF++ Y G + L Y L ++G E PQ MRVA+G+ E + Sbjct: 131 LDSAVIYDRDFSYSYFGFKTLERSYLLKLHGKIAERPQHMLMRVAVGI---HKENIDLVL 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S F ++PTLFNSGT HPQLSSCFL T+ DD + GI+ L+ AM++K +GG Sbjct: 188 ETYNLMSEKWFTHASPTLFNSGTPHPQLSSCFLLTMKDDSIEGIYETLKTCAMISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHID 458 +G + +R G++I GTNG S G++P L+V N TA V+QGG R+ GA YLE WH D Sbjct: 248 IGLNVHCIRASGSYIAGTNGHSNGLVPMLRVFNTTARYVDQGGNRRPGAFAMYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V +FL+L+KNTG + +R D+ A WIPDLFMKRV + W+L P E L + YG +F Sbjct: 308 VFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVEADGNWSLMCPHECPGLEETYGDKF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YER+ K + I A LW +L E+G P++ +KD CNI+S Q+++G Sbjct: 368 EELYTRYEREG-----KARKVIKAQKLWFAILESQTESGTPYMLYKDACNIKSNQKNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID 637 + SNLCTEI SS +E AVCNL S++L +++ +D+ KL + + L+ +ID Sbjct: 423 IKCSNLCTEIVEYSSPDEVAVCNLASLSLPMFVRSDRTYDFKKLHEITQVVTKNLNRIID 482 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + + +A+KSN HR IGLG+ G A + +P+ S +A ++ E E I A++A Sbjct: 483 INYYPVPEAEKSNMRHRPIGLGVQGLADAFIQMRVPFDSEDAKKLNREIFETIYHAALTA 542 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTI 756 SVE+A++ G Y ++ GS QG+ D G+ TS L WD L+ ++ Sbjct: 543 SVEMAKKSGPYETYAGSPVSQGILQHDMWGV----------KETSGLWDWDALRAQIAQH 592 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+++L + LW Sbjct: 593 GIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNQHLLHDLMELGLW 652 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ M + + GSI IE IP ++ ++ T +E+ LI+ A+ R +IDQ+QS N++ Sbjct: 653 NDRMKNKIISQGGSIAGIEEIPAHIRALYKTVWELSQKTLIDMAADRGAYIDQSQSFNVH 712 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927 + EP+ KL ++ AW GLKT YYLR+R A + + T VD K A P Sbjct: 713 IAEPNFGKLTSMHFYAWKRGLKTGMYYLRTRPAANAIQFT---VDQKALAAP 761 >gi|159485006|ref|XP_001700540.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas reinhardtii] gi|158272180|gb|EDO97984.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas reinhardtii] Length = 878 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 291/804 (36%), Positives = 443/804 (55%), Gaps = 64/804 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S+L+ ++ L P+YA + AR + L +K Sbjct: 41 LVAQKVAGGVYKGVTTSELDELAAETAAALTSTHPDYAILAARIAVSNL--------HKN 92 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ M LY R G +A L+ + + D + L ++++Y+RDF ++Y Sbjct: 93 TEKSFSKTMDKLYTY---RNPRNGEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYF 149 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I+G +E PQ MRVA+G+ ++ E A+ Y+ +S F ++P Sbjct: 150 GFKTLERSYLLRIDGKVVERPQHMLMRVAVGIHKEDIES---AITTYHAMSERWFTHASP 206 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +RG G++I Sbjct: 207 TLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIR 266 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA Y+E WH DV +FLDLRKN G + Sbjct: 267 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEA 326 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV + W+LF P+E L D +G+EFE Y YE++ Sbjct: 327 RARDLFYGLWIPDLFMERVEADKEWSLFCPNEAPGLADCWGEEFERLYLKYEQEG----- 381 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + R + A LW +L ETG+P++ +KD CN +S QQ++G + SNLCTEI +S Sbjct: 382 RSRRVVRAQQLWFAILEAQVETGNPYMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSP 441 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 +E AVCNL SI L AN FD++KLA + R L+ Sbjct: 442 DEIAVCNLASIALPRFVRERGSQPGWESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNK 501 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + KA++SN HR IGLG+ G LL + + SPEA E+ + E + A Sbjct: 502 IIDVNYYPHPKAQRSNMRHRPIGLGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAA 561 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 +S S ELA+ G Y ++ GS QGV D G+ D R W+EL+ R+ Sbjct: 562 LSTSCELAERDGPYETYAGSPVSQGVLQPDMWGVKPTGVD-------GRCNWEELRNRIA 614 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+YV+ +SG+FTVVN L+++L + Sbjct: 615 QHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMG 674 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W + ++L +GS+ +E IP++LK ++ T +EI L++ A+ R +IDQ+QS N Sbjct: 675 IWSADLKNELVAANGSVLELE-IPEELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFN 733 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV-----------EKSTLKGVDGK 922 +++ +P+ KL ++ AW GLKT YYLR+++A +K T +G Sbjct: 734 VFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAA 793 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTS 946 A P S + +LG+ + T+ Sbjct: 794 TAATPQMKMPSMSGNLGLTPNITA 817 >gi|18640305|ref|NP_570461.1| CMLV071 [Camelpox virus] gi|18482981|gb|AAL73778.1|AF438165_68 ribonucleotide reductase large subunit [Camelpox virus M-96] Length = 771 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAIIAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 YDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|52000447|dbj|BAD44751.1| NSG5 protein [Chlamydomonas reinhardtii] Length = 878 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 291/804 (36%), Positives = 443/804 (55%), Gaps = 64/804 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S+L+ ++ L P+YA + AR + L +K Sbjct: 41 LVAQKVAGGVYKGVTTSELDELAAETAAALTSTHPDYAILAARIAVSNL--------HKN 92 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ M LY R G +A L+ + + D + L ++++Y+RDF ++Y Sbjct: 93 TEKSFSKTMDKLYTY---RNPRNGEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYF 149 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I+G +E PQ MRVA+G+ ++ E A+ Y+ +S F ++P Sbjct: 150 GFKTLERSYLLRIDGKVVERPQHMLMRVAVGIHKEDIEA---AITTYHAMSERWFTHASP 206 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +RG G++I Sbjct: 207 TLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIR 266 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA Y+E WH DV +FLDLRKN G + Sbjct: 267 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEA 326 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV + W+LF P+E L D +G+EFE Y YE++ Sbjct: 327 RARDLFYGLWIPDLFMERVEADKEWSLFCPNEAPGLADCWGEEFERLYLKYEQEG----- 381 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + R + A LW +L ETG+P++ +KD CN +S QQ++G + SNLCTEI +S Sbjct: 382 RSRRVVRAQQLWFAILEAQVETGNPYMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSP 441 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 +E AVCNL SI L AN FD++KLA + R L+ Sbjct: 442 DEIAVCNLASIALPRFVRERGSQPGWESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNK 501 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + KA++SN HR IGLG+ G LL + + SPEA E+ + E + A Sbjct: 502 IIDVNYYPHPKAQRSNMRHRPIGLGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAA 561 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 +S S ELA+ G Y ++ GS QGV D G+ D R W+EL+ R+ Sbjct: 562 LSTSCELAERDGPYETYAGSPVSQGVLQPDMWGVKPTGVD-------GRCNWEELRNRIA 614 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+YV+ +SG+FTVVN L+++L + Sbjct: 615 QHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMG 674 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W + ++L +GS+ +E IP++LK ++ T +EI L++ A+ R +IDQ+QS N Sbjct: 675 IWSADLKNELVAANGSVLELE-IPEELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFN 733 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV-----------EKSTLKGVDGK 922 +++ +P+ KL ++ AW GLKT YYLR+++A +K T +G Sbjct: 734 VFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAA 793 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTS 946 A P S + +LG+ + T+ Sbjct: 794 TAATPQMKMPSMSGNLGLTPNITA 817 >gi|261197195|ref|XP_002625000.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces dermatitidis SLH14081] gi|239595630|gb|EEQ78211.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces dermatitidis SLH14081] gi|239606620|gb|EEQ83607.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces dermatitidis ER-3] Length = 886 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/778 (36%), Positives = 433/778 (55%), Gaps = 60/778 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 + L ++ V+ +Y K Q+ Q Y E R+ +E Sbjct: 82 AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQGTY-ETVMRHADE---------- 130 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + Sbjct: 131 --------FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 EK +E YNL+S F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A Sbjct: 183 VEK---VIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D+YG+EF+ YE YE++ RG+ + I A LW +L ETG+P++ +KD CN + Sbjct: 360 ADVYGEEFDALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKK 414 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628 S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ KL + Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDFGKLHEVTQVV 474 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPEA ++ + E Sbjct: 475 VRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPEAKQLNIQIFE 534 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I +++AS ELA+ G YS+++GS QG+ D + T WD Sbjct: 535 TIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +ID Sbjct: 645 DLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 Q+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|223999029|ref|XP_002289187.1| ribonucleotide reductase large chain subunit [Thalassiosira pseudonana CCMP1335] gi|220974395|gb|EED92724.1| ribonucleotide reductase large chain subunit [Thalassiosira pseudonana CCMP1335] Length = 813 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 280/779 (35%), Positives = 440/779 (56%), Gaps = 48/779 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S +++ + + C GL V+ ++ + + +Y G++ ++L+ Sbjct: 1 MYVVKRDGKKQSCQFDKIQSRISKLCYGLDQKFVNEAVISQKVIQGVYPGVTTTELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + + P+YA + AR + L +E K+ K +P+ Sbjct: 61 AQTAASFSTQHPDYAVLAARIEVSNLHKET----EKQFSKVVEAFYNYTHPK-------T 109 Query: 263 GVKARLLHESMMDFDLVYLANDLK-----YERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 G A L+ + + +D+V D+ ++RDF F+Y G + L Y L ++G E P Sbjct: 110 GEPAPLVSKEV--YDVVNANKDVLDGAVIHDRDFEFDYFGYKTLEKSYLLKLHGEIAERP 167 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376 Q MRV++G+ + + E R +E YNLLS F +TPTLFN+GT +PQ+SSCFLT + Sbjct: 168 QHMLMRVSVGIHMGDIE---RVLETYNLLSQRFFTHATPTLFNAGTPNPQMSSCFLTCIK 224 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + GI+ L+ A+++KY+GG+G + VR ++I GTNG S G++P L+V N+TA Sbjct: 225 ADSIDGIYDTLKNCAVISKYAGGIGMSISNVRASASYIRGTNGTSNGIVPMLRVFNNTAR 284 Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGG KRKG++ AY+E WH D+ FLDLRKN G++ R D+ A WIPDLFM+RV Q Sbjct: 285 YVDQGGGKRKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQRVEQ 344 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N WTL P+E L +G+EF+ YE YER+ K + I A LW +L E Sbjct: 345 NGDWTLMCPNECPGLDTCWGEEFKTLYEKYEREG-----KGRKTIKAQQLWFAVLDSQVE 399 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFAN 613 TG P++ +KD CN +S QQ++G + SNLCTEI ++ +E AVCNL SI+L A+ Sbjct: 400 TGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEIAVCNLASISLSKFVTPAD 459 Query: 614 N-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 N FD + L + + L+ VID N + +E+A++SN HR IG+G+ G A Sbjct: 460 NFGGEGHFDLENLKHISKVVTKNLNRVIDRNFYPVEEARRSNMRHRPIGIGVQGLADAFM 519 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 ++ +P+ SPEA ++ + E I F A AS+ELA++ G Y +++GS +G D G+ Sbjct: 520 MMKLPFESPEARQLNKDIFETIYFGACEASMELAEQEGPYETYEGSPASKGQLQFDMWGV 579 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 ++ W LK ++ GMRNS MA PTA+ A I G ++S +P N Sbjct: 580 ----------EPSNLWDWAGLKAKIAQHGMRNSLLMAPMPTASTAQILGNNESTEPFTSN 629 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + ++G+FT+VN L+ EL LW E + + + GS+ + IP ++ ++ T Sbjct: 630 MYNRRVLAGEFTIVNKHLLRELTANGLWTERVRNQIIAQGGSVQAVADIPKSIRDVYKTV 689 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 +EI +++ A+ R +I Q+QS+N+++ EPS KL ++ AW GLKT YYLR+R Sbjct: 690 WEIPQRAILDMAADRGAFICQSQSMNVHIGEPSTSKLTSMHFYAWKKGLKTGMYYLRTR 748 >gi|315639325|ref|ZP_07894487.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter upsaliensis JV21] gi|315480651|gb|EFU71293.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter upsaliensis JV21] Length = 789 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 309/824 (37%), Positives = 439/824 (53%), Gaps = 109/824 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G N +++ +A L+ VS + + DG++ +++ LI Sbjct: 1 MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + EYF R +EG Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFERGEKEG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322 R+L +DL L +K ERD F YLG++ LYDRY + + + IE+PQ FM Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKAEPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E + ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + D++ G Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI D+FMKR+ N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + DL +LYG+ FE YE YE+ D +K I A LW+K+L FETG P++ Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEK--DDSIVKEI--IDAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN-- 601 FKD N +P H G++ SSNLCTEI N+ EE V + Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVVIDGG 462 Query: 602 ----------LGSINLLAHFANNQFDYD--------------------KLASTIRTAVRV 631 L SIN F +F D LA + A+R+ Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E DE ME +S Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWDE 748 + AI AS LA E+G+Y FKGS W +G+FPID A+ +RD L S WD+ Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRDGLFAQ--SSCDWDQ 640 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 LRQKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNLNL 700 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 E Q + A+E+D L+++A+ R KWID Sbjct: 701 ETWQ-------------------------------YYTPAYELDQKILVKAAAVRGKWID 729 Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q QSLN++ LD+ SG L+ IY A +G+K+TYYLRS S S Sbjct: 730 QGQSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSESPDS 773 >gi|303273186|ref|XP_003055954.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462038|gb|EEH59330.1| predicted protein [Micromonas pusilla CCMP1545] Length = 816 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/806 (36%), Positives = 441/806 (54%), Gaps = 61/806 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S+L+ ++ ++ K P+YA++ AR + L + L + + + Sbjct: 38 LVAQKVASGVYKGVTTSELDELAAETAASMTSKHPDYAQLAARIAVSNLHKNTLKS-FSE 96 Query: 240 PQKATHHEMQ---CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 K H + + + E +KA + + D ++VY +RDF ++Y Sbjct: 97 TMKVMHEHVNKRNGKWSPLLADDVYEIIKA---NAATFDAEIVY-------DRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L ++G +E PQ MRVA+G+ K+ EK A++ Y++LS ++P Sbjct: 147 GYKTLERSYLLRVDGKIVERPQHLLMRVAIGIH-KDVEK---AIDTYHMLSERWMTHASP 202 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFNSGT PQLSSCFL + +D + GI+ L+E A ++K +GG+G +R ++I Sbjct: 203 TLFNSGTPRPQLSSCFLIAMKEDSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIR 262 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G+IP L+V NDTA V+QGG KRKGA YLE WH D+ ++LDLRKN G + Sbjct: 263 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFDWLDLRKNHGKEEA 322 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ W DLFM+RV N WTL P+E L D +G EFE Y +YE Q Sbjct: 323 RARDLFYGLWTNDLFMRRVESNGDWTLMCPNECPGLADSWGAEFEKLYTSYEEQG----- 377 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + I A LW +L ETG+P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 378 KGKKTIKAQQLWFAILEAQVETGNPYMLFKDACNSKSNQQNLGTIRSSNLCTEIVEFTSP 437 Query: 595 EETAVCNLGSINLLAHF-----------------------ANNQFDYDKLASTIRTAVRV 631 EETAVCNL SI L A+ FD+ KLA R R Sbjct: 438 EETAVCNLASIALPRFVVEENPASPTGRTEAKKLRGSLGAASRTFDHAKLAEITRKVTRN 497 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ +ID+N + +E A++SN HR IGLG+ G LL + + SPEA ++ E E I Sbjct: 498 LNRIIDVNYYPVETARRSNMRHRPIGLGVQGLADVFILLGLAFDSPEAQKLNAEIFETIY 557 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A++ S +A G Y ++ GS +G+ D G+ M R W L+ Sbjct: 558 FAALTESNAIAAVDGHYETYPGSPVSKGILQPDMWGV-------TEMPGGDRHDWAALRA 610 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++ T G+RNS +A PTA+ + I G ++ +P N+Y + +SG+FTVVN L+N+L Sbjct: 611 KIATSGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLNDLT 670 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + LWD + ++L ++GS+ ++ IPD LK I+ T +EI L++ A+ R +IDQ+Q Sbjct: 671 ELGLWDPKLKNELIANNGSVQGLD-IPDHLKAIYKTVWEIKQRVLVDMAADRGAFIDQSQ 729 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 S N+++ + + KL ++ AW GLKT YYLRSR+A K T+ GK NA D Sbjct: 730 SFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAVKFTVDQA-GKGNAQKSAD 788 Query: 931 PN---SSTHSLGIPSSCTSDTECEVC 953 P+ + + + S + EC +C Sbjct: 789 PDMEEEARMAAKLACSLANKDECVMC 814 >gi|85001013|ref|XP_955225.1| ribonucleoside-diphosphate reductase large chain [Theileria annulata strain Ankara] gi|65303371|emb|CAI75749.1| ribonucleoside-diphosphate reductase large chain, putative [Theileria annulata] Length = 891 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 289/782 (36%), Positives = 437/782 (55%), Gaps = 42/782 (5%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 V + V MY G+ S+L+ + + P+Y+++ A ++ L + L Sbjct: 92 VDAPRVTQSVINGMYTGIRTSELDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLND 151 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFA 292 + + H + +Y A L+ + + +F + L ++ Y RDF Sbjct: 152 FSEVIR--VLHSYKHVY----------NTNASLISDDVFEFVMENKDRLNAEIDYSRDFQ 199 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 ++Y G + L Y L NG +E PQ MRV+ G+ + E R ++ Y+L+S +F Sbjct: 200 YDYFGFKTLERSYLLKTNGKIVERPQHMIMRVSAGIHCGDLE---RTIQTYHLMSQRYFT 256 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTLFN+GT+HPQ+SSCFL + DD L GIF L + A ++K +GG+G +R G Sbjct: 257 HATPTLFNAGTKHPQMSSCFLLDMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASG 316 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTG 470 ++I GTNG S G++P LK+ N TA V+QGG KRKG+ YLE WH D+ + LDLRKN G Sbjct: 317 SYIRGTNGISNGIVPMLKIFNSTAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHG 376 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + +R D+ A WIPDLFMKRV N WTL PDE L++++G EFE Y YE+Q Sbjct: 377 SEDQRARDLFYALWIPDLFMKRVEANKNWTLMCPDECRGLYEVWGDEFERLYTQYEQQG- 435 Query: 531 RGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + RK I A LW +L ETG P++ +KD CN +S QQ++G + SSNLC EI Sbjct: 436 -----MGRKTIPAQKLWFAILQSQIETGTPYMLYKDACNSKSNQQNLGTIKSSNLCCEIV 490 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 +S +E AVCNL S+ L F N Q FD+ KL R L+ VID N + +++A Sbjct: 491 QFTSKDEVAVCNLASV-ALPKFVNTQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQA 549 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + SN HR +G+G+ G L+ P+ S EA E+ E + + +S S++LA++ G Sbjct: 550 RASNFRHRPMGVGVQGLADTFMLMRYPFESDEARELNKRIFETMYYACLSESIDLARQYG 609 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 Y S++GS +G+ D G A+V + L WD+LK ++ G+RNS +A Sbjct: 610 TYESYEGSPASKGLLQFDLWG--AKVDNSL-------WDWDKLKADLREHGLRNSLFIAP 660 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTA+ + I G ++S +P N+Y + +SG+F VVN L+N+L LW+E M L Sbjct: 661 MPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLNDLIDLGLWNETMKQKLIA 720 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 ++GS+ +I+ IP +K+++ T +EI +I+ A+ R +IDQ+QSLN+++++P+ KL Sbjct: 721 YNGSLKHIDEIPSHIKELYKTVWEIKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLT 780 Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 ++ W GLKT YYLR++ AT K T+ +L A P +S S G +S Sbjct: 781 SMHFYGWKKGLKTGVYYLRTQPATDAIKFTVDASISQL-AKSRVKPANSIMSDGNMTSIM 839 Query: 946 SD 947 SD Sbjct: 840 SD 841 >gi|255037023|ref|YP_003087644.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter fermentans DSM 18053] gi|254949779|gb|ACT94479.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter fermentans DSM 18053] Length = 814 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/785 (36%), Positives = 444/785 (56%), Gaps = 55/785 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESD 197 + ++ DG S ++ +E+ GL +V+ K+V +YDG++ ++ Sbjct: 1 MYVIKRDGRRESVKFDKVTARIEKLSYGLDATYVQPVEVAKKVV-----SGIYDGVTTAE 55 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ ++ ++ K P+YA + AR + L + L K+ M+ LY Sbjct: 56 LDNLAAETAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSATMKRLY----- 102 Query: 258 RYIEE--GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 YI+ G A L+ + + + L + + Y+RD++++Y G + L Y L + G Sbjct: 103 TYIDSKTGENASLISREVYEVIRQNASLLDSTIIYDRDYSYDYFGYKTLEKSYLLKVEGK 162 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 +E PQ MRVA+G+ E + A+E Y+LLS F +TPTLFN+GT PQ+SSCF Sbjct: 163 IVERPQHMLMRVAIGI---HQEDVQAAIETYHLLSEKWFTHATPTLFNAGTPKPQMSSCF 219 Query: 373 LTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ +D + GI+ L+ A++++ +GG+G VR G +I GTNG+S G++P L+V Sbjct: 220 LLTMKEDSINGIYDTLKNCALISQSAGGIGLSIHDVRATGTYIKGTNGQSNGIVPMLRVF 279 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKG+ Y+E WH D+ +FLDL+KN G + +R D+ A WIPDLFM Sbjct: 280 NDTARYVDQGGGKRKGSFAIYIEPWHSDIFDFLDLKKNHGKEEQRARDLFYALWIPDLFM 339 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV N W+LF P E L D + +EFE YE YER+ + + I A LW ++ Sbjct: 340 KRVEANDTWSLFCPHECPGLADTHSEEFEKLYEQYEREG-----RARKTIKAQDLWFAIM 394 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ +KD N +S QQ++G + SSNLCTEI ++ +E AVCNL SI L Sbjct: 395 ESQIETGTPYMLYKDHANSKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKF 454 Query: 611 FANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 FD+ KL + R L+ +ID+N + + +A+KSN HR IG+G+ G Sbjct: 455 VEQGADGFMHFDHQKLYEITKVVTRNLNKIIDLNFYPVPEAEKSNKRHRPIGIGVQGLAD 514 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 A ++ +P+ S EA + + E I + ++ AS+ELA + G Y ++ GS QGVF D Sbjct: 515 AFCMMRMPFDSDEARRLNKDIFETIYYGSMEASMELAMQNGPYETWAGSPISQGVFQFDM 574 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + E + R W++L+K V G+RNS +A PTA+ + I G ++ +P Sbjct: 575 WNVTPE---------SKRWNWEKLRKEVVQNGVRNSLLLAPMPTASTSQILGNNECFEPF 625 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N+YV+ +SG+F VVN +L+ +L + LW E M ++L GS+ I IP ++K ++ Sbjct: 626 TSNIYVRRVLSGEFVVVNKYLLKDLVRLGLWSEEMKNNLVRASGSVQAIPNIPQNIKDLY 685 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904 TA+EI L++ ++ R +I Q+QSLN++++E + KL ++ AW GLKT YYLR Sbjct: 686 KTAWEIKQRSLLDMSADRGAYICQSQSLNIFMEEANFGKLTSMHFYAWKKGLKTGMYYLR 745 Query: 905 SRSAT 909 +R+A+ Sbjct: 746 TRAAS 750 >gi|332023837|gb|EGI64061.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex echinatior] Length = 854 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/787 (36%), Positives = 438/787 (55%), Gaps = 61/787 (7%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231 V V + + +Y G++ L+ ++ T+ K P+YA + AR + L +E Sbjct: 65 VDPSAVAIQVIRGLYSGVTTVVLDNLAAETAATMATKHPDYAILAARIDVSNLHKETKKS 124 Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 V+ ++ T+H + Y+ +++ + L + + Y+ Sbjct: 125 FSEVMHDLHYAKNPVTNHYNPIISKHYY---------------NIIKNNAEKLDSAIIYD 169 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RDF + Y+G + L Y L ING +E PQ MRVA+G+ +K +E YN LS Sbjct: 170 RDFNYNYIGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHENNIDK---VIETYNYLSE 226 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 +F ++PTLFN+ T + Q+SSCFL T+ DD + IFG L+ A+++KY+GG+G + + Sbjct: 227 RYFTHASPTLFNACTNNQQMSSCFLLTLEDDSIKSIFGTLKNCALISKYAGGIGLNVHCI 286 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R T ++ G+I LK+ ND A+ V+QGG KR GA YLE WH D+ +FL+L+ Sbjct: 287 RAKNVEDTSTK-RTNGLISILKLYNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELK 345 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 +N GD R D+ WIPDLFM+RV + W+L P E L D++G EF+ Y YE Sbjct: 346 RNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMCPHESPGLSDVWGDEFKELYTRYE 405 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++ G K +++ A ++W +L ETG P++ +KD CN +S QH+G V SNLCT Sbjct: 406 KE---GRYK--KQVEARSVWLAILRSQVETGTPYMLYKDHCNRKSNHQHIGTVKCSNLCT 460 Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI S E AVCNL SI N+ + FD+DKL + + R LD VID+N + IE Sbjct: 461 EIIEYSGPGEVAVCNLASIAVNMFVNIDTKIFDFDKLKTVAKIVTRNLDKVIDVNFYPIE 520 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + + SNH HR IG+G+ G A L+ P+ S EA E+ + E + + A+ AS ELA E Sbjct: 521 ETRTSNHRHRPIGIGIQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAE 580 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G Y +++GS +G+ D + T+ WDELK ++ G+RNS + Sbjct: 581 KGTYETYQGSPVSKGILQYDMWNV----------KPTNLWDWDELKAKIAKHGVRNSLLI 630 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ A I G ++SI+P N+YV+ +SG+F +VN L+ +L R LWDE M +++ Sbjct: 631 APMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFIIVNPHLLRDLTSRGLWDEDMKNEI 690 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 + GS+ NIERIPDDLK+++ T +EI ++E A+ R ++DQ+QSLN+++ +P+ +K Sbjct: 691 LANFGSVQNIERIPDDLKELYKTVWEIPQKVILEMAADRGAFVDQSQSLNVHIGDPTTEK 750 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD----------GKLNAVPV 928 L ++ W GLKT YYLR++ A +V+KS L+ D +N+ P+ Sbjct: 751 LTSMHFFGWKSGLKTGMYYLRTKPAANPIQFTVDKSKLQNRDSVSNVSDASTSVVNSTPI 810 Query: 929 TDPNSST 935 PN + Sbjct: 811 QSPNQDS 817 >gi|71422050|ref|XP_812008.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi strain CL Brener] gi|70876737|gb|EAN90157.1| ribonucleoside-diphosphate reductase large chain, putative [Trypanosoma cruzi] Length = 796 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 296/800 (37%), Positives = 452/800 (56%), Gaps = 50/800 (6%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198 +A L + DG+L SF++ +L +E GL V KI+ ++D +S +L Sbjct: 2 LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + + ++ + K P+Y + R + L + +V + H++ Sbjct: 62 DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLETFSILHKHKIH--------- 112 Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313 + G A LL + + + + L + Y+RD FE+ G + L Y L ++ R Sbjct: 113 --DTGRAAPLLSDEVWEVVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGE 170 Query: 314 ---IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E PQ F+RVA+G+ ++ E+ K E Y+ +S F +TPTLFN+GT PQ+SS Sbjct: 171 REIAERPQQMFLRVALGIHGEDMERVK---ETYDHMSLGDFTHATPTLFNAGTPFPQMSS 227 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL + +D + GI+ L++ A+++K +GG+G +R G++I GTNG+S G++P L+ Sbjct: 228 CFLVAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLR 287 Query: 430 VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 V N+TA V+QGG KRKGA YLE WH D+ FL L+KNTG + R D+ A WIPDL Sbjct: 288 VWNNTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDL 347 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV WTL P L D YG +F+ YE YER+ +RG + + A +LW Sbjct: 348 FMERVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYERE-NRG----VKTVQAQSLWFA 402 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 +L ETG P++ +KD CN +S Q++VGV+ SNLCTEI +S +E AVCNL SI L Sbjct: 403 ILESQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASI-AL 461 Query: 609 AHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 F + + +D+ +L + + L+ VID N + + ++++SN +R IG+G+ G Sbjct: 462 PRFVDKERRIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMAD 521 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L+ +P+ EA + ++ E I + A+ ASVELA+ G Y+ F GS QG D Sbjct: 522 TFILMRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFD- 580 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 L E + R+ R WD LKKR+ GMRNS +A PTA+ + I G ++ +P Sbjct: 581 ---LWEQKP-----RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPF 632 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N+YV+ +SG+F VVN +LV +L +R LW+E M + + ++GS+ NI IP+DLK+++ Sbjct: 633 TSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELY 692 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904 +EI LIE A R K+IDQ+QSLNL+L+ P+ +L ++ AW GLKT YYLR Sbjct: 693 RVVWEIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLR 752 Query: 905 SRSAT-----SVEKSTLKGV 919 S+ A +V+ +TLKG+ Sbjct: 753 SKPAADAIKFTVDPNTLKGL 772 >gi|154297725|ref|XP_001549288.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10] gi|150858403|gb|EDN33595.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10] Length = 909 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 278/755 (36%), Positives = 433/755 (57%), Gaps = 39/755 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPDHIDAAAITQKVISGVYQGVNTIELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K H ++ LY R G + ++ + + + + Sbjct: 82 AVSNL--------HKQTKKQFSHVIRDLYQYTNPR---NGTASPMISKQTYECVMRHEEE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF ++Y G + L Y L ++G E PQ MRVA+G+ + E A+ Sbjct: 131 LNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIMRVAVGIHGDDIES---AI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S+ +F ++PTLF++GT QLSSCFL + +D + GI+ L+ AM++K +GG Sbjct: 188 ETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSIDGIYDTLKICAMISKNAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +R GA+I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D+YG EF Sbjct: 308 VFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMCPNECPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE+YE+ A +G + I A LW +L ETG+P++ +KD CN +S Q+++G Sbjct: 368 EALYESYEK-AGKGR----KTIKAQKLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVI 636 + SSNLCTEI S+ +E A CNL SI L N+ +D+ KL ++ VR L+ +I Sbjct: 423 IRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDFQKLHEVVQVVVRNLNKII 482 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + + +A+KSN HR I +G+ G A L +P+ SPEA + + E I A++ Sbjct: 483 DINYYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKHLNIQIFETIYHAALT 542 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 +SVE+A+E G Y +++GS +G D G+ T WD LK+ +K Sbjct: 543 SSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP----------TDLWDWDSLKQSIKQH 592 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L LW Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QS+N++ Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSMNIH 712 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 + +P+ K+ ++ W +GLKT YYLR+ +A++ Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASA 747 >gi|18859325|ref|NP_571530.1| ribonucleoside-diphosphate reductase large subunit [Danio rerio] gi|3914656|sp|P79732|RIR1_DANRE RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit; AltName: Full=Ribonucleotide reductase protein R1 class I gi|1695829|gb|AAB37102.1| ribonucleotide reductase protein R1 class I [Danio rerio] Length = 794 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/765 (36%), Positives = 434/765 (56%), Gaps = 48/765 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ T K P+YA + AR Sbjct: 22 IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAETAATSTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280 + L +E +K M+ LY Y+ + +R H M+ D+V Sbjct: 82 AVSNLHKET--------KKVFSEVMEDLY-----NYVNP-LNSR--HSPMISKETLDIVL 125 Query: 281 LAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 D + Y+RDF++ + G + L Y L ING E PQ MRV++G+ E Sbjct: 126 ANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKED 182 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++ Sbjct: 183 IAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALIS 242 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G + +R G +I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 243 KSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMYLE 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+L P++ L + Sbjct: 303 PWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDEC 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G+EFE Y YE++ + R + A LW ++ ETG P++ +KD CN +S + Sbjct: 363 WGEEFEKLYAKYEQEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNR 417 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632 Q++G + SNLCTEI +S++E AVCNL SI L + + + FD+ KLAS + V+ L Sbjct: 418 QNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNL 477 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +IDIN + +++A+ SN HR IG+G+ G A L+ P+ S EA + + E I + Sbjct: 478 NKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYY 537 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ +S ELA E G Y ++ G +G+ D T W LK++ Sbjct: 538 AALESSCELAAEYGPYQTYAGCPVSKGILQYDM----------WEKTPTDLWDWAALKEK 587 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L + Sbjct: 588 IANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTE 647 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R LW+E M + + +GSI I IPDDLK+++ T +EI +++ A+ R +IDQ+QS Sbjct: 648 RGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQS 707 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ EP+ KL ++ W GLKT YYLR++ + + TL Sbjct: 708 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTL 752 >gi|37551518|gb|AAQ93170.1| ribonucleotide reductase large subunit [Vaccinia virus] Length = 771 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK ++KT Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIKTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|222823071|ref|YP_002574644.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter lari RM2100] gi|222538292|gb|ACM63393.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter lari RM2100] Length = 791 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/824 (36%), Positives = 444/824 (53%), Gaps = 109/824 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A + L +VS + + DG+S +++ LI Sbjct: 1 MKVLKRNGRTEELDVSKIKKYTTDAVANLDNVSQSELEVDAKIQFRDGISTEEIQQTLIK 60 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ PN+ V AR L L YKK T ++ + Y+E+G Sbjct: 61 TAVDKIDIDRPNWTFVAARLFLYDL--------YKKVSGFTGYK-------HLREYLEKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K R+L +DL L +K ERD F YLG++ LYDRY + + G IE+PQ F Sbjct: 106 EKEGRILIGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S+F M +TPTL N+ T QLSSC++ + D++ Sbjct: 166 MAIAMFLAQNELDSQTWAKKFYDLISTFEVMLATPTLSNARTTRHQLSSCYIGSTSDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +FLDLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDINDFLDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + + L DLYG+EFE YE +E+ E V + A LW+K+L FE+G P++ Sbjct: 346 FDPADTASLCDLYGQEFEKRYEEFEKD----ESIVKEIVDAKELWKKILLSYFESGLPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------------SSEETA--- 598 FKD N +P H G++ SSNLCTEI N+ EE Sbjct: 402 CFKDSANKTNPNSHAGIIRSSNLCTEIFQNTEPNYYQIKITFDDKTELHLDEDEELTIDG 461 Query: 599 --------VCNLGSIN-----LLAHFANN---------QFDYDKLAS------TIRTAVR 630 V L SIN ++ + N + K+ + + TA+R Sbjct: 462 GYKKLAKKVSTLDSINGKKVYIVEKYKNEGKTAVCNLASINLSKINTKEDIQRVVPTAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S E E D ME I Sbjct: 522 MLDNVIDLNFYPHVKVKNTNLKSRAIGLGVMGEAQMLAEAQIYWGSNEHFEKIDRIMEMI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA-EVRDELAMNRTSRLPWDEL 749 S+ AI AS LA E+G+Y F+GS W +G+ PID A ++ + S W++L Sbjct: 582 SYEAILASSNLALEKGSYPDFEGSNWSKGIVPIDVANENAKKLTASEGLFDQSECDWEKL 641 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVN 808 ++++K G+RN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG TVV + N Sbjct: 642 REKLKRDGIRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPTVVPNLSAN 701 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 W + + A+E+D L+++A+ R KWID Sbjct: 702 ------TW--------------------------QYYTPAYELDQKILVKAAAIRGKWID 729 Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S S Sbjct: 730 QGQSLNIFVSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773 >gi|190346673|gb|EDK38820.2| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC 6260] Length = 863 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/768 (37%), Positives = 436/768 (56%), Gaps = 51/768 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLAAETAAYMTTIHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280 + L +K+ K + LY YI LH M+ +D++ Sbjct: 82 AVSNL--------HKQTTKQFSQVSKELY-----DYINPKTD---LHSPMISKETYDVIQ 125 Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 L + + ++RDF + Y G + L Y L ING E PQ MRVA+G+ + EK Sbjct: 126 KHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGDDIEK 185 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 +E YNL+S +F +PTLFN+GT PQ+SSCFL + +D + GI+ L+ A+++ Sbjct: 186 ---VIESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSIDGIYDTLKTCALIS 242 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +RG GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 243 KSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ EF+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L ++ Sbjct: 303 PWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLPEV 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG EFE YE YER+ RG I A LW +L ETG P++ +KD CN ++ Q Sbjct: 363 YGDEFEALYEKYEREG-RGR----STIKAQKLWYAILEAQTETGTPFMLYKDACNKKTNQ 417 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629 +++G++ SSNLC EI SS EE AVCNL SI L + ++ +++DKL +T Sbjct: 418 KNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWYNFDKLHEVTKTVT 477 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L+ +ID N + + +A++SN +R I LG+ G A L +P+ S EA E+ + E Sbjct: 478 GNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNIQIFET 537 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A+ AS+ELAQ+ G Y S++GS QG+ D L EL WD L Sbjct: 538 IYHGAVEASIELAQKEGPYESYEGSPASQGLLQFD---LWDRKPTEL-------WDWDTL 587 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ + Sbjct: 588 KQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRD 647 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L LW+++M +++ ++GSI N+ IPD++K ++ T +EI +I+ A+ R +IDQ Sbjct: 648 LVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQ 707 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +QSLN+++ +P+ KL ++ W GLKT YYLR+++A + + T+ Sbjct: 708 SQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755 >gi|146418447|ref|XP_001485189.1| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC 6260] Length = 863 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/768 (37%), Positives = 436/768 (56%), Gaps = 51/768 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLAAETAAYMTTIHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280 + L +K+ K + LY YI LH M+ +D++ Sbjct: 82 AVSNL--------HKQTTKQFSQVSKELY-----DYINPKTD---LHSPMISKETYDVIQ 125 Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 L + + ++RDF + Y G + L Y L ING E PQ MRVA+G+ + EK Sbjct: 126 KHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGDDIEK 185 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 +E YNL+S +F +PTLFN+GT PQ+SSCFL + +D + GI+ L+ A+++ Sbjct: 186 ---VIESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSIDGIYDTLKTCALIS 242 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +RG GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 243 KSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ EF+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L ++ Sbjct: 303 PWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLPEV 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG EFE YE YER+ RG I A LW +L ETG P++ +KD CN ++ Q Sbjct: 363 YGDEFEALYEKYEREG-RGR----STIKAQKLWYAILEAQTETGTPFMLYKDACNKKTNQ 417 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629 +++G++ SSNLC EI SS EE AVCNL SI L + ++ +++DKL +T Sbjct: 418 KNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWYNFDKLHEVTKTVT 477 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L+ +ID N + + +A++SN +R I LG+ G A L +P+ S EA E+ + E Sbjct: 478 GNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNIQIFET 537 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A+ AS+ELAQ+ G Y S++GS QG+ D L EL WD L Sbjct: 538 IYHGAVEASIELAQKEGPYESYEGSPASQGLLQFD---LWDRKPTEL-------WDWDTL 587 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ + Sbjct: 588 KQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRD 647 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L LW+++M +++ ++GSI N+ IPD++K ++ T +EI +I+ A+ R +IDQ Sbjct: 648 LVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQ 707 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +QSLN+++ +P+ KL ++ W GLKT YYLR+++A + + T+ Sbjct: 708 SQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755 >gi|58267480|ref|XP_570896.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus neoformans var. neoformans JEC21] gi|134112167|ref|XP_775272.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257927|gb|EAL20625.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227130|gb|AAW43589.1| ribonucleoside-diphosphate reductase large chain, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 863 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 298/778 (38%), Positives = 424/778 (54%), Gaps = 58/778 (7%) Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234 +++ K+V + ++ G++ +L+ ++ L K P+YA + AR + L +E Sbjct: 40 EITQKVV-----QGIHAGITTVELDNLAAETAAYLTTKHPDYAILAARIAISNLHKET-- 92 Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK-------- 286 KK A H++ + H M+D D+ + D K Sbjct: 93 ---KKVFSAVVHDLHAWVNPKTGK-----------HSPMIDDDVYKIVMDNKDILDSAII 138 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 Y+RDFA+ Y G + L Y L ING +E PQ MRVA+G+ +K +E YNL+ Sbjct: 139 YDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMIMRVAVGIHGSNIDK---VIETYNLM 195 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405 S +F ++PTLFN+GT PQ+SSCFL + DD + GI+ L+ A ++K +GG+G Sbjct: 196 SERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIDGIYDTLKTCAQISKTAGGIGLHIH 255 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464 +R G++I GTNG S G+IP L+ + TA V+QGG KR GA YLE WH DV +F+D Sbjct: 256 NIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQGGNKRPGAFAIYLEPWHADVFDFID 315 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 LRKN G + R D+ A WIPDLFMKRV + WTL P E L D+YG+EFE YE+ Sbjct: 316 LRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMCPAECPGLADVYGEEFEKLYES 375 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 YER+ K + I A LW +L ETG P+I +KD N +S Q+ +G + SSNL Sbjct: 376 YERKG-----KGRKTIKAQKLWFAILEAQTETGVPYICYKDAANSKSNQKQLGTIKSSNL 430 Query: 585 CTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 CTEI SS +E AVCNL S+ L A +D+ KL + + LD VI N + Sbjct: 431 CTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYDFKKLHEITKVVTKNLDTVITRNYYP 490 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + +A+ SN HR +GLG+ G A L +P+ SPEA E+ + E I A+ AS ELA Sbjct: 491 VPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSPEARELNIQIFETIYHAALEASCELA 550 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +E G Y S++GS +G+ D G + T W ELK ++ G+RNS Sbjct: 551 EEFGTYESYEGSPISKGILQYDMWGRVP----------TDLWDWTELKAKIAQHGVRNSL 600 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A PTA+ + I G ++ +P LY + +SGDF VV +L+ +L DLWD+ M Sbjct: 601 LVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLDLWDDNMKQ 660 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 + GSI +I IPDDLKKI+ T +EI +I+ A+ R +IDQ+QSLN++L PS Sbjct: 661 LIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVIDLAADRGAFIDQSQSLNIHLSNPSF 720 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAVPVTDPNSS 934 +L ++ W GLKT YYLR+R + +V+ STLK LN+ P S Sbjct: 721 PQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTVDASTLKTAKS-LNSSAKPSPTPS 777 >gi|316969123|gb|EFV53282.1| ribonucleoside-diphosphate reductase large subunit [Trichinella spiralis] Length = 833 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 278/765 (36%), Positives = 435/765 (56%), Gaps = 47/765 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + + ++ + +Y G++ +L+ S T+ K P+YA + AR Sbjct: 41 IKKLCYGLNMEHIEPILISQKVIAGLYQGVTTVELDNLAAEISATMTTKHPDYATLAARI 100 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+ +Y+ T+ + P+ +H+ ++ Sbjct: 101 AVSNLHKETKKVFSDVIDDLYQWINPNTNKHSPMISPK--------------VHQ-IIQA 145 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L + + Y+RDF++ Y G + L Y L ING E PQ MRVA+G+ + + Sbjct: 146 NSQRLNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAIGIHEDDIDA- 204 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAK 395 A+E YNL+S F ++PTLFN+GT PQLSSCFL T+ D + GI+ L+E A+++K Sbjct: 205 --AIETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYDTLKECAIISK 262 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G +I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 263 SAGGIGLNVHCIRASGTYIAGTNGYSNGLLPMLRVFNNTARYVDQGGNKRPGAFAVYLEP 322 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ +FLD +KNTG + R D+ A WIPDLFMKR+ + W+L P E L DL+ Sbjct: 323 WHADIFDFLDAKKNTGVEENRARDLFYALWIPDLFMKRIEADGDWSLMCPHECPGLADLW 382 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE YE YE Q K R+I A LW ++ ETG P++ +KD CN +S QQ Sbjct: 383 GDEFEKLYEKYEAQG-----KHKRRIKAQQLWYAIIESQIETGTPFMVYKDACNRKSNQQ 437 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVL 632 ++G + SNLCTEI SS +ET+VCNL SI N + A +FD+ KLA + L Sbjct: 438 NLGTIKCSNLCTEIVQYSSPDETSVCNLASIALNKFVNVAKREFDFAKLAEVTKVVTVNL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID N + + A+KSN HR IG+G+ G A L+ P+ S EA + + E I + Sbjct: 498 NKIIDRNYYPVAVAEKSNKRHRPIGIGVQGLADAFILMRYPFESEEARLLNKKIFETIYY 557 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ +S +LA++ G Y +++GS +G+ D + T W+ LK R Sbjct: 558 AALESSCDLAKQFGPYETYQGSPASKGILQYDMWNV----------QPTDLWDWESLKCR 607 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 ++ G+RNS +A PTA+ A I G ++S++ N+Y + +SG+F +VN L+ +L + Sbjct: 608 IEKYGLRNSLLLAPMPTASTAQILGNNESVEAYTSNVYTRRVLSGEFQIVNHHLMKDLVE 667 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LWDE++ +++ + GSI +IE IP ++++++ T +EI +I+ A+ R +IDQ+QS Sbjct: 668 LGLWDESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGAFIDQSQS 727 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ EP+ KL ++ W GLKT YYLR++ A + + T+ Sbjct: 728 LNIHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTV 772 >gi|325114109|emb|CBZ49667.1| putative ribonucleoside-diphosphate reductase, large subunit [Neospora caninum Liverpool] Length = 886 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 297/796 (37%), Positives = 450/796 (56%), Gaps = 54/796 (6%) Query: 166 VEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 +E+ GL + +++ N MY G+ S+L+ +S + P+++K+ AR Sbjct: 82 IEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAAQTSAYMAASHPDFSKLAARIA 141 Query: 225 LEKLRREV----LTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF--- 276 ++ L + LT + E Y+++ G +A+L+ + +F Sbjct: 142 IDNLHKNTTDNFLTVI-----------------EQLHGYVDKLGREAKLVSTEVYEFVKA 184 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L L Y RDF ++Y G + L Y L I+ +E PQ MRVA G+ E Sbjct: 185 NEKALNEALNYSRDFEYDYFGFKTLERSYLLKIHDRIVERPQHMLMRVACGIHCGNVE-- 242 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 RAVE Y L+S F +TPTLFN+GT PQ+SSCFL T+ +D + GIF L++ A+++K Sbjct: 243 -RAVETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDGIFSTLKQCALISK 301 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GGLG T +R ++I GTNG S G++P L+V ND A V+QGG KRKG++ YLE Sbjct: 302 TAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGGGKRKGSLAIYLEP 361 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV +FLD++KN G + RR D+ A WIPDLFM+RV NAGWTL P+E L +++ Sbjct: 362 WHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMCPNECPGLTEVW 421 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ YE YER+ RG + I A LW +L ETG P++ +KD CN +S Q+ Sbjct: 422 GEEFKELYERYEREG-RGR----KTIPAQHLWFAILQAQIETGTPYMLYKDACNRKSNQK 476 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRV 631 ++G + SNLCTE+ +S +E AVCNL S++L F + + FDY+ L ++ R Sbjct: 477 NLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSL-PKFVDRETRTFDYEHLKKIVKVMTRN 535 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ VID N + + +AK SN HR +GLG+ G A LL P+ SPEA + E I Sbjct: 536 LNRVIDRNYYPVPEAKNSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARLLNRNIFECIY 595 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + A+ AS ELA E G Y++++GS QG+ D G+ + W L++ Sbjct: 596 YAALEASCELAAEEGPYATYEGSPMSQGILQFDMWGVTPS---------SGLCDWSALRE 646 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++K G+RNS ++ PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L Sbjct: 647 KIKKHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLL 706 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +RDLW E + L H+G + N++ IPDDLK ++ T +EI +++ A R +IDQ+ Sbjct: 707 ERDLWSEDVKQQLIAHNGCVLNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRSPYIDQSH 766 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 SLN+++ P+ KL ++ W GLKT YYLR+++A K T VD +L Sbjct: 767 SLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT---VDSQLAMSAKAK 823 Query: 931 PNSSTHSLGIPSSCTS 946 + ST S G+ ++ TS Sbjct: 824 LSGSTFS-GVLTTTTS 838 >gi|291276994|ref|YP_003516766.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter mustelae 12198] gi|290964188|emb|CBG40033.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter mustelae 12198] Length = 789 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 305/831 (36%), Positives = 444/831 (53%), Gaps = 117/831 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G + + ++ A L+DVS + ++ D ++ +++ LI Sbjct: 2 ITVVKRSGRIEPLDISKIHKYTSSAVKDLKDVSHSELEVDSKFYFRDNITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L +V T Y+ + EYF + +E Sbjct: 62 TAVNKIDMDRPNWTFVAARLFLYDLYHKVSGFTGYRSLR------------EYFEKGEQE 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFF 321 G + L E FDL +L +K ERD F +LG++ LYDRY L ++ IE+PQ F Sbjct: 110 GKIVKGLKEK---FDLDFLNAQIKPERDLQFNFLGVKTLYDRYLLKDRQNKPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + A++FY+++S F + +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAIAMFLAQNEKDPNAYALQFYDVISKFEVITATPTLANARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF A +E A+L+KY GG+G D++ VRGLG+ I G + GV+PFLK+ ND A+AV+Q Sbjct: 227 GIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKITNDVAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH DV+EF+DLRKN+G++RRRTHD+ A WI DLFMKRV +N WTL Sbjct: 287 GTRKGAIATYLEIWHTDVQEFIDLRKNSGEERRRTHDLFPALWICDLFMKRVEENGLWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + L +LYG+EFE Y +E++ D + I A LW+K+LT FETG P++ Sbjct: 347 FDPYQCGILTELYGEEFEEKYLEFEKRQD----IIKEHIHAKELWKKILTNYFETGMPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCT-------------EITLNSSSEE------------ 596 FKD N +P H G++ SSNLCT E+ SS++ Sbjct: 403 CFKDNANKANPNPHTGIIRSSNLCTEIFQNTSANHYFIEVEFEDSSKQYFEEQELVLTDA 462 Query: 597 -------------------------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625 TAVCNL SINL + + D D++ + Sbjct: 463 GIEKKANKITSLDCIGGKKVYITSRVHKDGNTAVCNLASINLSR--IHTKEDIDRI---V 517 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A+R+LDNVI++N + K K +N +RAIGLG+MG L I + S E E D Sbjct: 518 PIAIRMLDNVIELNFYPNRKVKSTNLANRAIGLGVMGEAEMLATQKIHWGSQEHFEKIDM 577 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 ME IS++AI AS LA E+G Y F+GS W +G+FPID A + Sbjct: 578 IMEAISYNAILASSNLALEKGKYPQFEGSNWSKGIFPIDIANKEACKLVDRGGLFDREYN 637 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 638 WNFLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPIYRKKWYEENLSGMIPVVVPN 697 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L N+E P + A+++D +I++A+ RQK Sbjct: 698 L--------------------------NLETFP-----YYTRAYDLDQKQIIKAAAIRQK 726 Query: 866 WIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 W+DQ QS N ++ S K L IY AW +GLK+TYYLRS S + E+ Sbjct: 727 WMDQGQSTNTFIKLDGNASIKSLHEIYTLAWKLGLKSTYYLRSESPEAREE 777 >gi|224082486|ref|XP_002306711.1| predicted protein [Populus trichocarpa] gi|222856160|gb|EEE93707.1| predicted protein [Populus trichocarpa] Length = 810 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/764 (36%), Positives = 429/764 (56%), Gaps = 57/764 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ + L+ ++ ++ P+YA + AR + +L +K Sbjct: 38 LVAQKVCAGVYRGVTTTQLDELAAETAASMTANHPDYALLAARISVSRL--------HKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y G KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIELMYNNL---NKGSGQKAPLIADDVYEIIMKNAERLDSEILYDRDFEYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L ++G +E PQ MRVA+G+ + E A + Y+L+S F +TP Sbjct: 147 GFKTLERSYLLKVDGKIVERPQHLLMRVAVGIHKDDIES---ATKTYHLMSQSWFTHATP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G + G++I Sbjct: 204 TLFNAGTAQPQLSSCFLLCMKDDSIEGIYDTLKECAVISKLAGGIGIAVHNIHATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V N+TA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNNTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A WIPDLFM+RV + W+LF P E L D +G+EFE Y YER+ DR + Sbjct: 324 RARDLFLALWIPDLFMERVRGDDKWSLFCPSEAPGLADCWGQEFEKLYTQYERE-DRAK- 381 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + ISA LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTE+ +S Sbjct: 382 ---KIISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSP 438 Query: 595 EETAVCNLGSINLLAHFA---------------------NNQFDYDKLASTIRTAVRVLD 633 ETAVCNL S+ L F N FD++KLA T L+ Sbjct: 439 TETAVCNLASV-ALPRFVMERGVPAESQSSKMVGSRESKNRYFDFEKLAEVTTTITANLN 497 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +ID+N + +E A++SN HR IG+G+ G LL +P+ S EA + + E I +H Sbjct: 498 KIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSSEAKRLNKDIFETIYYH 557 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ +S ELA + G Y ++ GS +G+ +D G+ + R WD L++ + Sbjct: 558 ALRSSSELAAKDGPYETYCGSPVSKGILQMDMWGVTP----------SDRWDWDALREMI 607 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V+N L+N+L + Sbjct: 608 SKSGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVMNKHLLNDLTEM 667 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW + + + GS+ I IP+ LK I+ T +EI L++ A+ R +IDQ+QSL Sbjct: 668 GLWSPVLKNKIINESGSVSKIPEIPEQLKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSL 727 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+++++P KL ++ AW GLKT YYLR+R+A K T+ Sbjct: 728 NIHMEQPDLGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771 >gi|19718013|gb|AAG37538.1| CMP70L [Camelpox virus CMS] Length = 771 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/761 (36%), Positives = 436/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAIIAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 YDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADTFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|119188101|ref|XP_001244657.1| hypothetical protein CIMG_04098 [Coccidioides immitis RS] Length = 893 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/772 (36%), Positives = 433/772 (56%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 38 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 97 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K + LY YI S +++V Sbjct: 98 AVSNL--------HKQTKKQFSSVIDDLY-----HYINPKNNRPAPMISQKTYEIVMKHS 144 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ ++ EK Sbjct: 145 AELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK--- 201 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNL+S F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K + Sbjct: 202 AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 261 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE WH Sbjct: 262 GGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 321 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG Sbjct: 322 SDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGD 381 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 382 EFEALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 436 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI +S +E AVCNL S+ L + ++D+ KL + VR L+ Sbjct: 437 GTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNK 496 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + + +A+KSN HR I +G+ G A L +P+ SPEA ++ + E I A Sbjct: 497 IIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAA 556 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS ++A+ G Y +++GS QG+ D + T WD LK+ + Sbjct: 557 LTASCDIAKVDGPYETYEGSPVSQGILQYDMWNVTP----------TDLWDWDSLKRDIA 606 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 607 KHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 666 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 667 LWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSLN 726 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 727 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 778 >gi|66275870|ref|YP_232955.1| ribonucleotide reductase large subunit [Vaccinia virus] gi|132611|sp|P12848|RIR1_VACCW RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|335666|gb|AAB59806.1| ribonucleotide reductase [Vaccinia virus] gi|29692179|gb|AAO89352.1| ribonucleotide reductase large subunit [Vaccinia virus WR] Length = 771 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|88854118|gb|ABD52536.1| ribonucleotide reductase large subunit M1 [Vaccinia virus] Length = 771 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 278/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D ++ ++ W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP----------SNLWNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|207091868|ref|ZP_03239655.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori HPKX_438_AG0C1] Length = 733 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 307/758 (40%), Positives = 417/758 (55%), Gaps = 106/758 (13%) Query: 214 PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 PN++ V +R L L +V T Y+ + EYF E+G R+L Sbjct: 17 PNWSFVASRLFLYDLYHKVSGFTGYRHLK------------EYFENAEEKG---RILKGF 61 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM +AM LA Sbjct: 62 KEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQN 121 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391 E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ GIF + +E A Sbjct: 122 EQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMA 181 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 +L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G RKGA+ Y Sbjct: 182 LLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVY 241 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 LE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF P E DL Sbjct: 242 LEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLT 301 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ FKD N + Sbjct: 302 ELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLAFKDNANRCN 357 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------NLLAHFANNQFDYDKLA 622 P H G++ SSNLCTEI N++ + GSI L+ +N +KL Sbjct: 358 PNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGSIEFFEEKQLVTTDSNITKCANKLT 417 Query: 623 ST-------IRTAVRV-------LDNVIDINCHTI------------------------- 643 ST I A +V + N+ IN I Sbjct: 418 STDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNF 477 Query: 644 ---EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 K K +N +RAIGLG+MG L I + S E +E D ME IS+HAI SV Sbjct: 478 YPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSVN 537 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+E+G Y F+ S W +G+FPID A E + + W L+++VK GMRN Sbjct: 538 LAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRN 596 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E W+ Sbjct: 597 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNAE-----TWN--- 648 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--D 878 + +A++ID LI++A+ RQKWIDQ QS+N++L + Sbjct: 649 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 685 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 686 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 723 >gi|132610|sp|P20503|RIR1_VACCC RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|56404829|sp|Q76RD8|RIR1_VACCA RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|335407|gb|AAA48059.1| putative I4L [Vaccinia virus Copenhagen] gi|2772697|gb|AAB96436.1| ribonucleotide reductase, large subunit [Vaccinia virus] gi|38348940|gb|AAR17916.1| ribonucleotide reductase large subunit [Vaccinia virus] gi|44971425|gb|AAS49775.1| RPXV062 [Rabbitpox virus] gi|47088393|gb|AAT10463.1| ribonucleotide reductase large subunit [Vaccinia virus] gi|56713441|gb|AAW23481.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus] gi|56713725|gb|AAW23763.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus] gi|88900691|gb|ABD57603.1| VACV069 [Vaccinia virus] gi|90819733|gb|ABD98543.1| VACV-DUKE-081 [Vaccinia virus] gi|160857955|emb|CAM58243.1| ribonucleotide reductase large subunit [Vaccinia virus Ankara] gi|167412562|gb|ABZ79996.1| ribonucleotide reductase large subunit [Vaccinia virus GLV-1h68] Length = 771 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|321259241|ref|XP_003194341.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus gattii WM276] gi|317460812|gb|ADV22554.1| ribonucleoside-diphosphate reductase large chain, putative [Cryptococcus gattii WM276] Length = 863 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 295/762 (38%), Positives = 420/762 (55%), Gaps = 59/762 (7%) Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234 +++ K+V + ++ G++ +L+ ++ L K P+YA + AR + L +E Sbjct: 40 EITQKVV-----QGIHAGITTVELDNLAAETAAYLTTKHPDYAILAARIAISNLHKET-- 92 Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---------LANDL 285 KK A H++ V + S M D VY L + + Sbjct: 93 ---KKVFSAVVHDLHAW------------VNPKTGKHSPMIDDEVYKVVMDNKDILDSAI 137 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y+RDFA+ Y G + L Y L ING +E PQ MRVA+G+ +K +E YNL Sbjct: 138 IYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMIMRVAVGIHGANIDK---VIETYNL 194 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404 +S +F ++PTLFN+GT PQ+SSCFL + DD + GI+ L+ A ++K +GG+G Sbjct: 195 MSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIDGIYDTLKTCAQISKTAGGIGLHI 254 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463 +R G++I GTNG S G+IP L+ + TA V+QGG KR GA YLE WH DV +F+ Sbjct: 255 HNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQGGNKRPGAFAIYLEPWHADVFDFI 314 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 DLRKN G + R D+ A WIPDLFMKRV + WTL P E L D+YG+EFE YE Sbjct: 315 DLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMCPAECPGLADVYGEEFEKLYE 374 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +YERQ K + I A LW +L ETG P+I +KD N +S Q+H+G + SSN Sbjct: 375 SYERQG-----KGRKTIKAQKLWFAILEAQTETGVPYICYKDAANSKSNQKHLGTIKSSN 429 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 LCTEI SS +E AVCNL S+ L A +D+ KL + + LD VI N + Sbjct: 430 LCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYDFKKLHEITKVVTKNLDTVITRNYY 489 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A+ SN HR +GLG+ G A L +P+ S EA E+ + E I A+ AS EL Sbjct: 490 PVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSLEARELNIQIFETIYHAALEASCEL 549 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G Y S++GS +G+ D G + T W ELK ++ G+RNS Sbjct: 550 AEEQGTYESYEGSPLSKGILQYDMWGRVP----------TDLWDWTELKAKIAQHGVRNS 599 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A PTA+ + I G ++ +P LY + +SGDF VV +L+ +L DLWD+ M Sbjct: 600 LLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLDLWDDNMK 659 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 + GSI +I IPDDLKKI+ T +EI +I+ A+ R +IDQ+QSLN++L PS Sbjct: 660 QLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVIDLAADRGAFIDQSQSLNIHLSNPS 719 Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917 +L ++ W GLKT YYLR+R + +++ STLK Sbjct: 720 FPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTIDASTLK 761 >gi|149248790|ref|XP_001528782.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces elongisporus NRRL YB-4239] gi|146448736|gb|EDK43124.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces elongisporus NRRL YB-4239] Length = 881 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 287/770 (37%), Positives = 433/770 (56%), Gaps = 55/770 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ ++ T+ P+YA + AR Sbjct: 22 VQRLCYGLDPTHVEPVAITQKVIAGVYQGVTTIELDNLAAETAATMTTIHPDYAVLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280 + L ++ T Y K + YI K LH M+ +D++ Sbjct: 82 AVSNLHKQT-TKQYSAVSKILYE------------YINPETK---LHSPMISKETYDIIQ 125 Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 L + + Y+RDF + Y G + L Y L +NG E PQ MRVA+G+ ++ Sbjct: 126 EHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIMRVAIGIHGRDI-- 183 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 R +E YNL+S +F +P LFN+GT PQ+SSCFL + +D + GI+ L+ A+++ Sbjct: 184 -PRVIETYNLMSQRYFTHGSPCLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKTCALIS 242 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 243 KSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ EF+++RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L D Sbjct: 303 PWHSDIFEFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADC 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG+EFE Y Y + RG + I A LW +L ETG P++ +KD CN +S Q Sbjct: 363 YGEEFEELYNKYVAEG-RGR----QTIKAQKLWYSILECQTETGTPFMLYKDACNAKSNQ 417 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629 +++G++ SSNLC EI SS EE AVCNL SI L + ++ ++++KL + Sbjct: 418 KNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFIEQDENKIWYNFEKLHDVTKVVT 477 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R L+ VID N + + +A+KSN HR I LG+ G A +L I + S EA E+ + E Sbjct: 478 RNLNRVIDRNYYPVPEAEKSNMRHRPIALGVQGLADAFMVLRIAFDSQEARELNIQIFET 537 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWD 747 I A+ AS+ELAQE GAY +++GS QG+ D NR T WD Sbjct: 538 IYHAAVEASIELAQEEGAYETYQGSPASQGLLQFD------------LWNRKPTELWDWD 585 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 ELK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ Sbjct: 586 ELKAKLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLL 645 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +L +W++AM S + ++GSI + IPD++K ++ T +EI +I+ AS R +I Sbjct: 646 RDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHIIDMASDRAAFI 705 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 DQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 706 DQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755 >gi|62288418|gb|AAX78464.1| unknown [synthetic construct] Length = 797 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 48 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 107 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 108 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 154 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 155 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 211 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 212 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 271 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 272 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 331 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 332 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 391 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 392 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 446 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 447 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 506 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 507 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 566 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 567 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 616 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 617 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 676 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 677 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 735 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 736 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 776 >gi|261334781|emb|CBH17775.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma brucei gambiense DAL972] Length = 838 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/745 (38%), Positives = 422/745 (56%), Gaps = 43/745 (5%) Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 +G+S S L+ L ++ + K P+Y + R +T ++K ++ + Sbjct: 54 EGMSTSMLDELLAETAAYCVTKHPDYGLLAGRL--------AVTALHKTTTESVLDSFRV 105 Query: 251 LYPEYFCRYIEEGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305 L+ ++ + K A L+ E + D L + YERDF FEY G + L Y Sbjct: 106 LH-----EHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSY 160 Query: 306 FLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L ++ R +E PQ F+RVA+G+ ++ E+ K E Y+ +S F +TPTLFN Sbjct: 161 LLRVDKGRGVMEVVERPQQMFLRVALGIHGEDLERVK---ETYDYMSQGFFTHATPTLFN 217 Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +GT PQ+SSCFL + +D + GI+ L++ A+++K +GG+G +R G++I GTNG Sbjct: 218 AGTPFPQMSSCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNG 277 Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S G++P L+V N+TA V+QGG KRKGA YLE WH D+ FL L+KNTG + +R D Sbjct: 278 TSNGLVPMLRVWNNTARYVDQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARD 337 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + WIPDLFM+RV + WTL P+ L D YG+EF YE YER+ RG R Sbjct: 338 LFYGLWIPDLFMERVESHGTWTLMDPNTAPFLSDCYGQEFTDLYERYEREG-RG----VR 392 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I A LW +L ETG P++ +KD CN +S Q+++G + SNLCTEI +S +E A Sbjct: 393 TIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVA 452 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL SI L + FDY L + R L+ VID N + + +A+ SN HR +G+ Sbjct: 453 VCNLASIALPRFVKDGAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGI 512 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A LL +P+A PEA ++ + E I F A+ AS ELA++ G Y +FKGS + Sbjct: 513 GVQGLADAFALLSLPFAHPEAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASE 572 Query: 719 GVFPIDSIGLLAEVRDELAMNRTS------RLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 G D L E R MN S WD LK+RV +GMRNS +A PTA+ Sbjct: 573 GKLQFD---LWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTAST 629 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G ++ I+P N+YV+ +SG+F VVN LV EL + LW++ M + +GS+ Sbjct: 630 SQILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVS 689 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+ IP+ +++++ +EI LI+ A+ R ++IDQ+QSLNL+L P+ +L ++ + Sbjct: 690 GIKEIPERIRELYKVVWEIRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYS 749 Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL 916 W GLKT YYLRS+ A K TL Sbjct: 750 WKKGLKTGMYYLRSQPAADAIKFTL 774 >gi|242014390|ref|XP_002427874.1| Ribonucleoside-diphosphate reductase large chain, putative [Pediculus humanus corporis] gi|212512343|gb|EEB15136.1| Ribonucleoside-diphosphate reductase large chain, putative [Pediculus humanus corporis] Length = 795 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/805 (35%), Positives = 450/805 (55%), Gaps = 53/805 (6%) Query: 166 VEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL D I ++ + +Y G++ ++L++ S ++ + P+YA + AR Sbjct: 25 IQKLCYGLNLDYVDPIAITVKVINGLYSGVTTAELDSLAAEVSASMTTQHPDYAILAARI 84 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+T +Y L ++ I+ H ++ Sbjct: 85 AVSNLHKETKVSFSDVMTDLYNMKNSFNQQPTPMLSDYHYDIIIK--------HADELNA 136 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 ++Y ERD+ + Y G + L Y L ING +E PQ MRVA+GL + Sbjct: 137 AIIY-------ERDYNYNYFGFKTLERSYLLKINGKVVERPQHMLMRVAVGL---HGDDI 186 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNLLS +F ++PTLF++ TR PQLSSCFL T+ +D + GI+ L++ A+++K Sbjct: 187 SSAIETYNLLSEKYFTHASPTLFSAATRKPQLSSCFLLTMKEDSIDGIYETLKQCALISK 246 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G +I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 247 SAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 306 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ EFLDL+KNTG + R D+ A WIPDLFM+RV QN W L P L D + Sbjct: 307 WHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQEWCLMCPKTCPGLSDCW 366 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF Y +YE + +K+ A +LW ++ ETG P++ +KD CN +S QQ Sbjct: 367 GEEFNKLYLSYEEKG-----LYVKKVKAQSLWYAIIESQVETGTPYMLYKDACNRKSNQQ 421 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVL 632 ++G + SNLCTEI SS EE AVCNL SI N+ + ++++KL + + L Sbjct: 422 NLGTIKCSNLCTEIVEYSSPEEIAVCNLASIAVNMFVK-PDKTYNFEKLKDVTKIITKNL 480 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VIDI + + +AK SN HR IG+G+ G A L+ +P+ SPEA ++ + E I + Sbjct: 481 NKVIDITYYPVPEAKLSNLRHRPIGIGIQGLADAFILMRLPFDSPEAQKLNIQIFETIYY 540 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS ELA G Y +++GS +G+ D G+ T+ WD LK + Sbjct: 541 GALEASSELAAIHGPYETYEGSPASKGILQYDMWGVTP----------TNLWDWDALKNK 590 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VVN L+ +L + Sbjct: 591 IKKWGIRNSLLIAPMPTASTAQILGNNESFEPYTTNIYTRRVLSGEFQVVNQHLLKDLTE 650 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW++ M + + + GSI NI+ IP +LK ++ T +EI +++ A+ R +IDQ+QS Sbjct: 651 IGLWNDEMKNTIIANGGSIQNIDSIPKELKALYKTVWEISQKVILKMAADRGAFIDQSQS 710 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 LN+++ +P+ KL ++ AW +GLKT YYLR++ A + T+ K+N V + Sbjct: 711 LNIHIAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAAQPIQFTVDKT--KVNNANVKEV 768 Query: 932 NSSTHSLGIPS-SCT--SDTECEVC 953 ++ + S SC+ + +C +C Sbjct: 769 STEKDKFNMESISCSLQNKDDCLMC 793 >gi|71755889|ref|XP_828859.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma brucei] gi|70834245|gb|EAN79747.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma brucei] Length = 838 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 287/743 (38%), Positives = 415/743 (55%), Gaps = 39/743 (5%) Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 +G+S S L+ L ++ + K P+Y + R + L + +V + H Q Sbjct: 54 EGMSTSMLDELLAETAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQA 113 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 A L+ E + D L + YERDF FEY G + L Y L Sbjct: 114 TRRH-----------APLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLL 162 Query: 308 HINGSR-----IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 ++ R +E PQ F+RVA+G+ ++ E+ K E Y+ +S F +TPTLFN+G Sbjct: 163 RVDKGRGVMEVVERPQQMFLRVALGIHGEDLERVK---ETYDYMSQGFFTHATPTLFNAG 219 Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T PQ+SSCFL + +D + GI+ L++ A+++K +GG+G +R G++I GTNG S Sbjct: 220 TPFPQMSSCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTS 279 Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 G++P L+V N+TA V+QGG KRKGA YLE WH D+ FL L+KNTG + +R D+ Sbjct: 280 NGLVPMLRVWNNTARYVDQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLF 339 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 WIPDLFM+RV + WTL P+ L D YG+EF YE YER+ RG R I Sbjct: 340 YGLWIPDLFMERVESHGTWTLMDPNTAPFLSDCYGQEFTDLYERYEREG-RG----VRTI 394 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW +L ETG P++ +KD CN +S Q+++G + SNLCTEI +S +E AVC Sbjct: 395 QAQELWFLILESQVETGVPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVC 454 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL SI L + FDY L + R L+ VID N + + +A+ SN HR +G+G+ Sbjct: 455 NLASIALPRFVKDGAFDYVALKEVTKVVTRNLNRVIDRNHYPVREARYSNLRHRPVGIGV 514 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+A PEA ++ + E I F A+ AS ELA++ G Y +FKGS +G Sbjct: 515 QGLADTFALLSLPFAHPEAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGK 574 Query: 721 FPIDSIGLLAEVRDELAMNRTS------RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 D L E R MN S WD LK+RV +GMRNS +A PTA+ + Sbjct: 575 LQFD---LWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLVAPMPTASTSQ 631 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G ++ I+P N+YV+ +SG+F VVN LV EL + LW++ M + +GS+ I Sbjct: 632 ILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLVKELIRLQLWNDDMRRKIIALNGSVSGI 691 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 + IP+ +++++ +EI LI+ A+ R ++IDQ+QSLNL+L P+ +L ++ +W Sbjct: 692 KEIPERIRELYKVVWEIRQKDLIDMAADRGRYIDQSQSLNLFLGTPTSSQLTSMHFYSWK 751 Query: 895 MGLKT-TYYLRSRSATSVEKSTL 916 GLKT YYLRS+ A K TL Sbjct: 752 KGLKTGMYYLRSQPAADAIKFTL 774 >gi|260947674|ref|XP_002618134.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720] gi|238848006|gb|EEQ37470.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720] Length = 858 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 282/769 (36%), Positives = 435/769 (56%), Gaps = 53/769 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 ++ C GL V + V +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 IQRLCYGLDSDHVDAVAVTQRVISGVYHGVTTIELDNLAAETAAYMTTIHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL-- 281 + L +K+ K + LY YI LH M+ + + Sbjct: 82 AVSNL--------HKQTTKQFSQVAKILY-----EYINPKTD---LHSPMISEETYKIIC 125 Query: 282 --ANDLK----YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 A++L Y+RDF + Y G + L Y L +NG E PQ MRVA+G+ + E Sbjct: 126 ENADELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIMRVAVGIHGNDIE- 184 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 R +E YNL+S +F +PTLFN+GT PQ+SSCFL + DD + GI+ L+ A+++ Sbjct: 185 --RVIETYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSIDGIYDTLKTCALIS 242 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 243 KSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFAIYLE 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L D+ Sbjct: 303 PWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADV 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG EFE YE YER+ RG + A LW +L ETG P++ +KD CN ++ Q Sbjct: 363 YGDEFEALYEKYEREG-RGR----STVKAQKLWYSILEAQTETGTPFMLYKDACNKKTNQ 417 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAV 629 +++G++ SSNLC EI SS EE AVCNL SI L + +++ +++DKL + Sbjct: 418 KNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDASSSWYNFDKLHEVTKVVT 477 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R L+ +ID N + +E+A++SN +R I LG+ G A L +P+ S EA E+ + E Sbjct: 478 RNLNRIIDRNFYPVEEARRSNMRNRPIALGVQGLADAFMSLRLPFDSQEAKELNIQIFET 537 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDE 748 I A+ AS+ELAQE G Y +++GS +G+ D L + S L WD Sbjct: 538 IYHAAVEASIELAQEEGPYETYEGSPASKGLLQYD-----------LWDRKPSELWDWDT 586 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN ++ Sbjct: 587 LKQNLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPHMLK 646 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L +W++ M +++ ++GSI ++ +PD++K+++ T +EI +I+ A+ R +ID Sbjct: 647 DLVDLGIWNDNMKNNIIANNGSIQSLPNVPDEIKRLYKTVWEISQKHIIDMAADRAAFID 706 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 Q+QSLN+++ EP+ KL ++ W GLKT YYLR+++A + + T+ Sbjct: 707 QSQSLNIHIREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755 >gi|257461040|ref|ZP_05626138.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter gracilis RM3268] gi|257441414|gb|EEV16559.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter gracilis RM3268] Length = 790 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 309/829 (37%), Positives = 433/829 (52%), Gaps = 119/829 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA GL++VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKYTSEAVEGLENVSLSELEVDAKIQFRDMITTEEIQQTLI- 59 Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +T +EK PN+ V AR L Y K T +YF R Sbjct: 60 --KTAVEKIDVDRPNWTFVAARLFL-----------YDLYHKVTGFSGYNSLEDYFARGE 106 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 G R++ +DL L + L+ +RD F YLG++ LYDRY + +G+ IE+PQ Sbjct: 107 AAG---RIMLGLKEKYDLEDLNSYLQPQRDLQFNYLGIKTLYDRYLIKDKSGAPIELPQQ 163 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FM +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD+ Sbjct: 164 MFMAIAMFLAQNELDCQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDN 223 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLK+ ND AVAV+ Sbjct: 224 IEGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVD 283 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKR+ W Sbjct: 284 QLGTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHEIFPALWINDLFMKRLQSGGKW 343 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLF P EVSDL DLYG EFE YE YE AD K I A LW+K+LT FETG P Sbjct: 344 TLFDPAEVSDLSDLYGAEFEARYEQYE--ADDKISK--STILAKELWKKILTSYFETGMP 399 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------------S 594 ++ FKD N +P H G++ SSNLCTEI N++ + Sbjct: 400 FLCFKDNANRINPNAHQGLIRSSNLCTEIFQNTAPNHYKIKVVFADGSERLFEENEDVRT 459 Query: 595 EETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAV------------------RVL--- 632 + V I L + F +K S TAV RV+ Sbjct: 460 DAGIVKKAKKITALDTLGGKEIFIVEKGCSEGATAVCNLASVNLSKINSREEIARVMPIA 519 Query: 633 ----DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNVID+N + K K +N RAIGLG+MG L + + S E E+ D ME Sbjct: 520 VRMLDNVIDLNFYPHAKVKHTNLKTRAIGLGVMGEAQMLAERGVKWGSYEHFELIDRIME 579 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR-----TSR 743 +SF+AI AS LA E+G Y F GS W +G+FPID LA + + R S Sbjct: 580 NVSFNAIKASSNLAVEKGRYPDFAGSKWSEGIFPID----LANENAKALVKRGGLFEQSS 635 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 WD L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 636 CDWDGLREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV- 694 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + + + + A+E+D L+++ + R Sbjct: 695 ------------------------------VPNLSPKTWQAYVPAYELDQRLLVKAGAIR 724 Query: 864 QKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 QKWIDQ QSLN++ LD+ SG L IY AW +GLK+TYYLRS S S Sbjct: 725 QKWIDQGQSLNIFMSLDKASGGYLSEIYTLAWQLGLKSTYYLRSESPDS 773 >gi|307180389|gb|EFN68415.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus floridanus] Length = 889 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/779 (36%), Positives = 437/779 (56%), Gaps = 57/779 (7%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231 V V + + +Y G++ L+ ++ T+ P+YA + AR + L +E Sbjct: 65 VDPSAVAIQVIRGLYSGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKETKKN 124 Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 V+ +Y T+ + Y+ +++ + L + + Y+ Sbjct: 125 FSKVMHDLYHARDSVTNQHTPIINERYY---------------NIIKNNAEKLDSAIIYD 169 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RDF++ Y+G + L Y L ING +E PQ MRVA+G+ ET+ +K A+E YN LS Sbjct: 170 RDFSYNYIGFKTLERSYLLKINGKIVERPQHMLMRVAVGI--HETDIDK-AIETYNYLSE 226 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 +F ++PTLFN+ T + Q+SSCFL T+ +D + GIFG L++ A+++KY+GG+G + + Sbjct: 227 RYFTHASPTLFNACTNNQQMSSCFLLTLDNDSIKGIFGTLKKCALISKYAGGIGLNVHCI 286 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R + G++ LK+ ND A+ V+QGG KR GA YLE WH D+ +FL+LR Sbjct: 287 RA--KSTEDNTDTTNGLVSVLKLYNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELR 344 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 +N GD R D+ WIPDLFM+RV N W+L P E L D++G EF+ Y YE Sbjct: 345 RNIGDGNMRARDLFYGLWIPDLFMERVYNNENWSLMCPHESPGLADVWGDEFKELYIRYE 404 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++ G K +++ A A+W +L ETG P++ +KD CN +S QH+G + SNLCT Sbjct: 405 KE---GRYK--KQVEARAVWVAILRSQVETGTPYMLYKDHCNRKSNHQHIGTIKCSNLCT 459 Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 E+ S E AVCNL SI N+ + N FD+DKL + + R LD VID+N + I Sbjct: 460 EVIQYSGPGEVAVCNLASIAVNMFVNTNNKTFDFDKLKTIAKVVTRNLDKVIDVNFYPIV 519 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + K SN HR IG+G+ G A L+ P+ S EA E+ + E + + A+ AS +LA E Sbjct: 520 ETKTSNQKHRPIGIGIQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCKLAAE 579 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G Y +++GS +G+ D + T+ WD+LK+++ G+RNS + Sbjct: 580 KGTYETYEGSPVSKGILQYDMWNVKP----------TNLWDWDKLKEKIAKHGVRNSLLI 629 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ A I G ++SI+P N+YV+ +SG+F +VN L+ +L R LWDE M +++ Sbjct: 630 APMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEI 689 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 GS+ NI+RIPDDLK ++ T +EI ++E A+ R +IDQ+QSLN+++ +P+ +K Sbjct: 690 LASFGSVQNIDRIPDDLKVLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEK 749 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD-----GKLNAVPVTDPN 932 L ++ W GLKT YYLR++ A +V+KS L+ D +N P+ PN Sbjct: 750 LTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDKSKLRNNDSISSASTVNNTPIQSPN 808 >gi|28422346|gb|AAH46846.1| RRM1 protein [Xenopus laevis] Length = 760 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 275/757 (36%), Positives = 436/757 (57%), Gaps = 32/757 (4%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLAAETAATLTTKHPDYAILAARV 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L +E ++ + ++ + L ++ E + L ++ ++ ++Y Sbjct: 82 AVSNLHKET-KKIFSDVMEDLYNYVNPLNSKHSPMVSRETLDIVLANKDRLNSSIIY--- 137 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 +RDF++ + G + L Y L ING E PQ MRV++G+ + + A+E Y Sbjct: 138 ----DRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKTDIDA---AIETY 190 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 NLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K +GG+G Sbjct: 191 NLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGIGV 250 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461 + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH DV + Sbjct: 251 AVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDVFD 310 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P E L +++G +FE Sbjct: 311 FLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFEEL 370 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 YE YER+ + + + A +W ++ ETG P++ +KD CN +S QQ++G + Sbjct: 371 YEKYEREG-----RTRKVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIKC 425 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEI +S +E AVCNL S+ L + FD+ KLA + VR L+ +I+IN Sbjct: 426 SNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFKKLADVTKVIVRNLNKIIEINF 485 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + +A+ SN HR IG+G+ G A L+ P+ S +A + + E I + A+ +S E Sbjct: 486 YPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKAQMLNKQIFETIYYAALESSCE 545 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+E G Y +++G +G+ D + T W LK+++ G+RN Sbjct: 546 LAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGIRN 595 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L ++ LW+E M Sbjct: 596 SLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNEEM 655 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + ++GSI N+ IP DLK+++ T +EI +I A+ R +IDQ+QSLN+++ EP Sbjct: 656 KNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIHVAEP 715 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + KL ++ W GLKT YYLR+R A + + TL Sbjct: 716 NYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|323449664|gb|EGB05550.1| hypothetical protein AURANDRAFT_30730 [Aureococcus anophagefferens] Length = 787 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 279/774 (36%), Positives = 435/774 (56%), Gaps = 41/774 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++++ +G + ++ +++ C GL + + + + + +YDG++ +L+ Sbjct: 1 MQVVKRNGKKETVRYDKITSRIKKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRR---EVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ + + P+++ + AR + L + + + V +K K H + + P Sbjct: 61 AQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEKLHKHVHPKTK--KPAALIS- 117 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 +E H+ ++ +VY +RDF ++Y G + L Y + ++G+ E PQ Sbjct: 118 -DETYATVQKHKDAINAAIVY-------DRDFEYDYFGFKTLERSYLMRLDGAIAERPQH 169 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRVA+G+ + A+E Y ++S F +TPTLFN+GT PQLSSCFL + +D Sbjct: 170 MIMRVALGI---HGDDLAGALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKED 226 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA V Sbjct: 227 SIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYIRGSNGTSNGIVPMLRVYNDTARYV 286 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKG+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV N Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANG 346 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P+E L D +G EFE YE YE E + + I A LW +L ETG Sbjct: 347 SWSLMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLWFAILDSQVETG 401 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614 P++ +KD CN +S Q+H+G + SSNLCTEI ++ +E AVCNL SINL AH + Sbjct: 402 TPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLTAHVEGSGDA 461 Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 FD+ KL T + L+ VID+N + +E+AK SN HR IG+G+ G AL L P Sbjct: 462 ATFDFAKLKRTAYVVTKNLNKVIDVNYYPVEEAKSSNLKHRPIGIGVQGMADALVKLRYP 521 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S +A I + E I F A+ AS++LA+E G Y S++GS QG+F D L V+ Sbjct: 522 YESDDAKRINKDVFETIYFGAMEASIDLARELGPYDSYEGSPTSQGLFQFD----LWNVK 577 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + R W+ L+ R+ G RNS +A PTA+ A I G ++S +P N+Y + Sbjct: 578 P------SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRR 631 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 ++G+F VVN +L+ +L R LW + + + GS+ + IPDDLK ++ T +EI Sbjct: 632 VLAGEFAVVNKYLLQDLIARGLWTSEIRNQIIADKGSVQGVAAIPDDLKALYKTTWEIKQ 691 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 +++ ++ R +I Q+QSLNL++ +P+ KL ++ AW GLKT YYLR+R Sbjct: 692 KCVLDMSADRGAFICQSQSLNLHIADPNPGKLTSMHFYAWKKGLKTGMYYLRTR 745 >gi|86134367|ref|ZP_01052949.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter sp. MED152] gi|85821230|gb|EAQ42377.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter sp. MED152] Length = 799 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/763 (37%), Positives = 440/763 (57%), Gaps = 38/763 (4%) Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 V++ C GL + + V + +YDG++ S+L+ ++ T+ P+YAK+ AR Sbjct: 22 VKKMCYGLNKIVDPVKVAMRVIEGLYDGVTTSELDNLAAETAATMTTAHPDYAKLAARI- 80 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281 ++ ++K +K+ M LY F KA LL + + + + L Sbjct: 81 -------AVSNLHKNTKKSFSETMDDLY---FYVNPRTEKKAPLLADDVYEIIKANAEKL 130 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 + + Y RDF ++Y G + L Y L +NG E PQ MRV++G+ + ++ A+ Sbjct: 131 DSTIIYNRDFNYDYFGFKTLERSYLLKLNGQIAERPQHMLMRVSIGIHKNDIDE---AIA 187 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400 Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + GI+ L++ A +++ +GG+ Sbjct: 188 TYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLQMQDDSIEGIYDTLKQTAKISQSAGGI 247 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G +R G++I GTNG S G++P L+V NDTA V+QGG KRKG+ YLE WH D+ Sbjct: 248 GLSLHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYLEPWHADI 307 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLDL+KN G + R D+ A WI DLFMKRV ++ WTL P E L+D YG+EFE Sbjct: 308 FDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVQEDGEWTLMCPHECPHLYDTYGEEFE 367 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y +YE A +G + I A LW K+L ETG P++ +KD N ++ Q+++G + Sbjct: 368 RLYTSYE-AAGKGR----KTIKARELWEKILESQIETGTPYMLYKDAVNRKTNQKNLGTI 422 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634 SSNLCTEI ++ +E AVCNL SI L + + F++ KL + R LD Sbjct: 423 RSSNLCTEIMEYTAKDEVAVCNLASIALPMFVSERENGEKYFNHKKLFDVTKKVTRNLDT 482 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID N + +++A+ SN HR +GLG+ G L +P+ S EA ++ + E + + A Sbjct: 483 VIDANFYPVKEAENSNFRHRPVGLGIQGLADTFINLRLPFTSDEAKKLNQDIFETMYYAA 542 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 +++S+E+A+ + YS+FKGS +G F + G+ +EL+ N WD+L+K V Sbjct: 543 VTSSMEIAKAKEPYSTFKGSPMSEGEFQFNMWGV---NDNELSGN----WDWDKLRKNVM 595 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F VVN L+ +L + Sbjct: 596 KYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVELG 655 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LWD M + +GSI +IE IP +L++++ T +E+ +I+ A R +IDQ+QSLN Sbjct: 656 LWDNDMKESIMRANGSIQHIEEIPSELRELYKTVWEMSMKDIIDMARHRGYFIDQSQSLN 715 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 L+L +P KL ++ AW GLKT YYLR++SA + + T+ Sbjct: 716 LFLKDPDYGKLTSMHFYAWKSGLKTGMYYLRTKSAVNAIQFTV 758 >gi|145256649|ref|XP_001401473.1| ribonucleoside-diphosphate reductase large chain [Aspergillus niger CBS 513.88] gi|134058380|emb|CAK38565.1| unnamed protein product [Aspergillus niger] Length = 865 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/799 (36%), Positives = 442/799 (55%), Gaps = 53/799 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y + + E + + + H ++ Sbjct: 82 AVSNLHKQTKKQFSLVISDLYHYVNPKNNQPAPMISKETY--------EIIMKHADELNS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF + + G + L Y L ING E PQ MRVA+G+ + EK Sbjct: 134 AIVY-------DRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGSDIEK- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + +D + GI+ L+ AM++K Sbjct: 186 --AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 244 TAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+Y Sbjct: 304 WHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EF+ YE YE++ RG R I A LW +L ETG+P++ +KD CN +S Q+ Sbjct: 364 GDEFDALYEKYEKEG-RGR----RTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI S+ +E AVCNL S+ L A ++D+ KL ++ VR L Sbjct: 419 NLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +IDIN + + +AKKSN HR I LG+ G A L +P+ S EA ++ + E I Sbjct: 479 NKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELK 750 ++AS +LA+E G Y +++GS QG+ D +RT WD LK Sbjct: 539 AGLTASSDLAKEFGTYETYEGSPVSQGILQYD------------MWDRTPTDLWDWAALK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 AKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 647 VDLGLWSDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWEISQRTILQMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QSLN++L EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ K+ V Sbjct: 707 QSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVEDTNVA 766 Query: 930 DPNSS--THSLGIPSSCTS 946 N++ ++G SS S Sbjct: 767 RTNAAYKKRAVGAASSTYS 785 >gi|115398293|ref|XP_001214738.1| ribonucleoside-diphosphate reductase large chain [Aspergillus terreus NIH2624] gi|114192929|gb|EAU34629.1| ribonucleoside-diphosphate reductase large chain [Aspergillus terreus NIH2624] Length = 886 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/772 (36%), Positives = 429/772 (55%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 44 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 103 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L K T + + + F Y+ S ++ V Sbjct: 104 AVSNL------------HKQTKKQFSLVISDLF-HYVNPRNNKPAPMISKETYETVMKHA 150 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF + + G + L Y L ING E PQ MRVA+G+ + EK Sbjct: 151 DELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGNDIEK--- 207 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E Y+L+S +F ++PTLF++GT PQL+SCFL + +D + GI+ L+ AM++K + Sbjct: 208 AIETYHLMSQKYFTHASPTLFSAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISKNA 267 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 268 GGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 327 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+YG Sbjct: 328 SDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGD 387 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF+ YE YE++ RG R + A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 388 EFDALYEKYEKEG-RGR----RTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 442 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI S+ +E AVCNL S+ L ++D+ KL ++ VR L+ Sbjct: 443 GTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTFVDATRGEYDFGKLHEVVQVLVRNLNK 502 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + + +A+KSN HR I LG+ G A L +P+ SPEA ++ + E I A Sbjct: 503 IIDINYYPVPEARKSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYHGA 562 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS +LA+E G Y +++GS QG+ D T WD LK ++ Sbjct: 563 LTASSDLAKELGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDALKAKIA 612 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 613 QTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 672 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 673 LWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLN 732 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ K+ ++ W MGLKT YYLR+ +A+ +V++ LK D Sbjct: 733 IHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 784 >gi|241672125|ref|XP_002411450.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] gi|215504101|gb|EEC13595.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] Length = 779 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 282/784 (35%), Positives = 444/784 (56%), Gaps = 52/784 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V ++ + +Y G++ +L+ ++ T+ K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPCLITQKVINGLYPGVTTVELDNLAAETAATMTTKHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+ +Y + T + E + +++ E+ F Sbjct: 82 AISNLHKETKKVFSEVVEDLYNMVSEKTRLRTPMISDETY----------KIVMENAEAF 131 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + + + Y+RDF + + G + L Y L ING +E PQ MRV++G+ + E Sbjct: 132 N-----SAIIYDRDFNYNFFGFKTLERSYLLKINGKVVERPQHMLMRVSVGIHGADVES- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 + YNL+S F ++PTLFNSGT PQLSSCFL + DD + GI+ L++ A+++K Sbjct: 186 --VLNTYNLMSEKWFTHASPTLFNSGTPRPQLSSCFLLQMKDDSIEGIYDTLKQCALISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 244 SAGGIGVNIHCIRASGSYIAGTNGTSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV +FLDL+KNTG + R D+ A WIPDLFM+RV Q+ W+L P E LH++Y Sbjct: 304 WHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVEQDQMWSLMCPHECPGLHEVY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G++FE Y YE GE + R++ A LW +L ETG P++ +KD CN +S Q+ Sbjct: 364 GEDFEKLYTKYE-----GEKRYRRQVQAQQLWYAILESQIETGTPYMLYKDACNSKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 ++G + SNLCTE+ ++ +E AVCNL SI L FD+ KL + + L+ Sbjct: 419 NLGTIKCSNLCTEVIEYTAPDEVAVCNLASIALNRFVHEGSFDFQKLREVSQVITKNLNR 478 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + I +A+KSN +HR IG+G+ G LL +P+ +A + + E I + A Sbjct: 479 IIDINFYPIPEAEKSNKSHRPIGIGVQGLADTFILLRLPFDCEKARLLNKQIFETIYYGA 538 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS +LA+E G Y ++ G QG+ D G+ T W LK R+ Sbjct: 539 LEASCDLAKELGPYETYPGCPVSQGILQYDMWGVTP----------TDMWDWAALKARIA 588 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F VVN L+ +L R Sbjct: 589 QYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQHLLKDLTDRG 648 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW+E + + L ++GS+ ++ IPDDLK+++ T +EI +++ A+ R ++DQ+QSLN Sbjct: 649 LWNEDLKNSLIANNGSVQELD-IPDDLKELYRTVWEIPQKNILQMAADRGAFVDQSQSLN 707 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS-----VEKSTLKGVDGKLNAVPV 928 +++ +P+ KL ++ W +GLKT YYLR++ A S V+K+ L+ + ++NAV Sbjct: 708 VHIAQPNYGKLTSMHFFGWKLGLKTGMYYLRTKPAASAIQFTVDKTALRKKE-QMNAVTC 766 Query: 929 TDPN 932 + N Sbjct: 767 SLKN 770 >gi|296421726|ref|XP_002840415.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636631|emb|CAZ84606.1| unnamed protein product [Tuber melanosporum] Length = 884 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 277/774 (35%), Positives = 431/774 (55%), Gaps = 54/774 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDSEHVDAATITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y + E + + + H S +D Sbjct: 82 AVSNLHKQTKKQFSQVISDLYHYVNPKNGRPASMISTETY--------ETVMRHASELDS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 ++Y ++DF + Y G + L Y L ING E PQ MRVA+G+ ++ +K Sbjct: 134 AIIY-------DKDFNYNYFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGEDVDK- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAK 395 +E YNL SS +F ++PTLFN+GT PQLSSCFL T+ D + GI+ L+ AM++K Sbjct: 186 --VIETYNLTSSKYFTHASPTLFNAGTPSPQLSSCFLVTMKGDSIDGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N TA V+QGG KR GA Y+E Sbjct: 244 TAGGIGLNIHCIRATGSYIAGTNGSSNGIVPMLRVFNHTARYVDQGGNKRPGAFAIYMEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ +F+DLRKN G + R D+ A WIPDLFMKRV NA W+LF P+E L D++ Sbjct: 304 WHADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANAEWSLFCPNEAPGLADVW 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE Y YE D + I A LW +L ETG+P++ +KD CN +S QQ Sbjct: 364 GEEFEALYNKYENTKDLAR----KTIKAQKLWYHILEAQTETGNPFMLYKDACNRKSNQQ 419 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI S+ +E AVCNL S+ L + ++D+ KL + ++ L Sbjct: 420 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDVQRGEYDFAKLHEVTKVVIKNL 479 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + + +A+KSN HR +G+G+ G A L +P+ SP+A ++ + E I Sbjct: 480 NKIIDVNFYPVPEARKSNTRHRPVGVGVQGLADAFLALRMPFESPQAKQLNIQIFETIYH 539 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS ELA+ +G Y +++GS +G D + T WDELK++ Sbjct: 540 AAVEASTELAEIQGPYPTYEGSPASKGQLQYDLWNVTP----------TELWDWDELKEK 589 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 VK G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 590 VKKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVD 649 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW + M + + +GSI NI IPDD+K ++ T +EI +IE +IDQ+QS Sbjct: 650 MGLWSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWEISQKKVIEVCG---AFIDQSQS 706 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 LN+++ P+ KL ++ W +GLKT YYLR+++A +V++ LK D Sbjct: 707 LNIHIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAAAAIQFTVDQEALKVAD 760 >gi|195050620|ref|XP_001992932.1| GH13371 [Drosophila grimshawi] gi|193899991|gb|EDV98857.1| GH13371 [Drosophila grimshawi] Length = 821 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 292/794 (36%), Positives = 440/794 (55%), Gaps = 41/794 (5%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDG 192 SKS P KL ++ DG + ++ +++ C L D + ++ + +Y G Sbjct: 4 SKSLKP--SKLYVIKRDGRQEEIHFDKITSRIQKLCYNLNMDFVDPVSITLKVINGLYCG 61 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQ 249 ++ +L+ + +L + +YA + AR + L +E V + V++ K + E Sbjct: 62 VTTQELDNLAAEIAASLTTQHADYALLAARIAVSNLHKETRKVFSDVFEDLYKHINKETN 121 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 E H +++ L + + Y+RDF + Y G + L Y L I Sbjct: 122 -----------EPSPMVSEFHYNIVKKHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKI 170 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 N E PQ MRV++G+ + + AVE YNLLS +F ++PTLF + T PQ+S Sbjct: 171 NHKIAERPQHMLMRVSIGIHGDDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQMS 227 Query: 370 SCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL T V D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L Sbjct: 228 SCFLLTMVSDSIEGIFKSVEQCAMISKAAGGIGLNVHCIRAKGTSICGTNGTSNGLVPML 287 Query: 429 KVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +V N+ A V+QGG KR GA YLE WH D+ EF+DL+KNTG + R ++ A WIPD Sbjct: 288 RVFNNVARYVDQGGGKRPGAFAIYLEPWHSDILEFMDLKKNTGKEEHRARELFYALWIPD 347 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV N W+L P + L D++G +FE Y YE++ K R I A LW Sbjct: 348 LFMKRVEANEDWSLMCPHKCPGLQDVWGDDFEKLYVQYEKEG-----KANRVIKAQTLWF 402 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 ++ ETG P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L Sbjct: 403 AIIEAQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIAL 462 Query: 608 LAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 +++ +D+ KL +T + L+ +IDIN + + +AKKSN HR IG+G+ GF A Sbjct: 463 NMFVTSDKTYDFKKLKEVTKTVTKNLNKIIDINYYPLPEAKKSNFRHRPIGIGVQGFADA 522 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L L+ PY S EA + + E I F A+ AS ELAQ+ G Y ++ GS +G+ D Sbjct: 523 LILMRHPYESEEAALLNQQIFETIYFGALEASCELAQKEGPYETYPGSPVSKGILQYDMW 582 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 G T W+ LK +K G+RNS +A PTA+ A I G ++S +P Sbjct: 583 G----------KTPTDLWDWNSLKLSIKEHGVRNSLLVAPMPTASTAQIMGNNESFEPYT 632 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 N+Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP +++ ++ Sbjct: 633 SNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIIASRGSIQNIESIPKNVRDLYK 692 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 T +EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR+ Sbjct: 693 TVWEISVKTTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRT 752 Query: 906 R-SATSVEKSTLKG 918 + +A +++ + KG Sbjct: 753 KPAANAIQFTVAKG 766 >gi|51342225|gb|AAU01269.1| MPXV-WRAIR059 [Monkeypox virus] gi|58220529|gb|AAW67817.1| MPXV-SL-059 [Monkeypox virus] gi|59858865|gb|AAX09160.1| MPXV-COP-059 [Monkeypox virus] gi|68448741|gb|AAY96864.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|68449343|gb|AAY97463.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|68449543|gb|AAY97662.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] Length = 771 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG+D RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKCI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|154174561|ref|YP_001407352.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter curvus 525.92] gi|112802438|gb|EAT99782.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter curvus 525.92] Length = 790 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 299/824 (36%), Positives = 443/824 (53%), Gaps = 109/824 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ A +GL++V+ + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKYTTAAVAGLENVNLSELEVDAKIQFRDMITTEEIQQTLIK 60 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-YIEE 262 ++ I+ PN+ V AR L L +H++ R Y+++ Sbjct: 61 TAVDKIDIDRPNWTFVAARLFLYDL----------------YHKVTGFNGYNHLREYLQK 104 Query: 263 GVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 G KA R++ +DL L ++ ERD F YLG++ LYDRY + NG+ IE+PQ Sbjct: 105 GEKAGRIIAGLKEKYDLDDLNAYIRPERDLQFAYLGIKTLYDRYLIKDKNGAPIELPQQM 164 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 165 FMAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNI 224 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 225 EGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQ 284 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +N W+ Sbjct: 285 LGTRKGAIAVYIEPWHMDVADFLDLRKNSGEERRRAHELFPALWINDLFMKRVRENGRWS 344 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P +VSDL DLYG+ FE YE YE + + + V K LW+K+LT FETG P+ Sbjct: 345 LFDPAQVSDLCDLYGENFERRYEQYENEENIQKNVVLAK----ELWKKILTSYFETGMPF 400 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601 + FKD N +P H G++ SSNLCTEI N++ EE + Sbjct: 401 LCFKDNANKANPNDHEGIIRSSNLCTEIFQNTAPNYYKIKITFDDGGERLFDEEEDVTID 460 Query: 602 LG------SINLLAHFANNQ-FDYDKLASTIRTA-------------------------V 629 G ++ L Q F +K + +TA V Sbjct: 461 SGITKKAKKLSALDSLGGRQIFIVEKESVEGKTAVCNLASVNLSKVNKKADIERVVPIAV 520 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + +K K +N R+IGLG+MG L + + E + D ME Sbjct: 521 RMLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGGYEHFALIDSIMEN 580 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE-VRDELAMNRTSRLPWDE 748 IS+ AI S LA E+G Y +F+GS W +GV PID+ A+ + + + W++ Sbjct: 581 ISYQAIYTSSNLAVEKGKYPTFEGSKWSRGVMPIDTANENAKALLNHGGLFDEDTCDWEK 640 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+ +VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG Sbjct: 641 LRAKVKTDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------- 689 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 MI ++ + + D + + A+E+D L+ +A+ RQKWID Sbjct: 690 -----------MIPNV---------VPNLSPDTWQFYTPAYELDQRVLVRAAAVRQKWID 729 Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q QSLN++ LD+ SG L IY AW +GLK+TYYLRS S S Sbjct: 730 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDS 773 >gi|223038384|ref|ZP_03608678.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter rectus RM3267] gi|222880241|gb|EEF15328.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter rectus RM3267] Length = 791 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 305/831 (36%), Positives = 447/831 (53%), Gaps = 122/831 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA +GL +VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLI- 59 Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-Y 259 +T +EK PN+ V AR L L +H++ R Y Sbjct: 60 --KTAVEKIDIDRPNWTFVAARLFLYDL----------------YHKVTGFSGYNHLRDY 101 Query: 260 IEEGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317 +++G KA R++ +DL L + ++ ERD F YLG++ LYDRY + +G+ IE+P Sbjct: 102 LQKGEKAGRIIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELP 161 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q FM +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + P Sbjct: 162 QQMFMAIAMFLAQNELDCQGWAKKFYDLVSKFEVMLATPTLSNARTTRHQLSSCYVGSTP 221 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVA Sbjct: 222 DNIEGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVA 281 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +NA Sbjct: 282 VDQLGTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENA 341 Query: 498 GWTLFSPDEVSDLHDLYGKEFE---IAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 W+LF P EV+DL DLYG EFE IAYEN E+ + A LW+K+LT F Sbjct: 342 RWSLFDPAEVADLCDLYGDEFEARYIAYENDEKIQK-------NVVMAKELWKKILTSYF 394 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SE 595 E+G P++ FKD N +P H G++ SSNLCTEI N+ E Sbjct: 395 ESGMPFLCFKDNANKTNPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSERLFDEE 454 Query: 596 ETAVCNLG------SINLLAHFANNQ-FDYDKLASTIRTAV------------------- 629 E + G ++ L Q F +K + +TAV Sbjct: 455 EDVRVDSGIVKKAKKLSALDSIGGEQIFIVEKESLEGKTAVCNLASINLSKINKKEDIER 514 Query: 630 ------RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 R+LDNVID+N + +K K +N R+IGLG+MG L + + S E + + Sbjct: 515 VVPIAVRMLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALI 574 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRT 741 D ME ISF+AI AS LA E+G Y F+GS W +GV PID+ A+ + D + Sbjct: 575 DSVMENISFNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDE 634 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + W +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG Sbjct: 635 NACDWSKLREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG---- 690 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 MI ++ + + + + + A+E+D L+ + + Sbjct: 691 ------------------MIPNV---------VPNLSPETWQFYTPAYELDQRVLVRAGA 723 Query: 862 RRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 RQKWIDQ QSLN++ LD+ SG L IY AW +GLK+TYYLRS S S Sbjct: 724 IRQKWIDQGQSLNIFMSLDKASGGYLSEIYMLAWELGLKSTYYLRSESPDS 774 >gi|113195253|ref|YP_717383.1| ribonucleotide reductase large subunit [Taterapox virus] gi|90660529|gb|ABD97642.1| ribonucleotide reductase large subunit [Taterapox virus] Length = 771 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 436/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHFPIISSITMDVVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|6969720|gb|AAF33932.1| TI4L [Vaccinia virus Tian Tan] Length = 771 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 436/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GFRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|303316562|ref|XP_003068283.1| Ribonucleoside-diphosphate reductase large chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107964|gb|EER26138.1| Ribonucleoside-diphosphate reductase large chain, putative [Coccidioides posadasii C735 delta SOWgp] Length = 877 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/772 (36%), Positives = 433/772 (56%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K + LY YI S +++V Sbjct: 82 AVSNL--------HKQTKKQFSSVIDDLY-----HYINPKNNRPAPMISQKTYEIVMKHS 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ ++ EK Sbjct: 129 AELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNL+S F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K + Sbjct: 186 AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG Sbjct: 306 SDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFEALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI +S +E AVCNL S+ L + ++D+ KL + VR L+ Sbjct: 421 GTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + + +A+KSN HR I +G+ G A L +P+ SPEA ++ + E I A Sbjct: 481 IIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAA 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS ++A+ G Y +++GS QGV D + T WD LK+ + Sbjct: 541 LTASCDIAKVDGPYETYEGSPVSQGVLQYDMWNVTP----------TDLWDWDSLKRDIA 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 KHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GSI +I IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIAEGGSIQSIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|255710753|ref|XP_002551660.1| KLTH0A04686p [Lachancea thermotolerans] gi|238933037|emb|CAR21218.1| KLTH0A04686p [Lachancea thermotolerans] Length = 879 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/767 (36%), Positives = 428/767 (55%), Gaps = 47/767 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y+G++ +L+ + + P+YA + AR Sbjct: 22 VSRLCYGLDPNHVDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTIHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L ++ T Q + + + G+ + ++ + + FD++ Sbjct: 82 AISNLHKQT-----------TKQFSQVVSDLFHYVNPKNGIHSPMISQEV--FDIIQKHK 128 Query: 284 D-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 D + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ + + Sbjct: 129 DELNSAIVYDRDFQYNYFGFKTLERSYLLRINGEVAERPQHLIMRVAVGI---HGDNIPK 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 +E YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + GI+ L+E AM++K + Sbjct: 186 VIETYNLMSLKYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEGIYDTLKECAMISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ +F+D+RKN G + R D+ A W+PDLFMKRV +N WTLFSP E L D+YG Sbjct: 306 SDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGDWTLFSPSEAPGLSDVYGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE Y Q RG + I A LW +L ETG P++ +KD CN +S Q+++ Sbjct: 366 EFEALYERY-VQEGRGR----KTIKAQKLWYAILEAQTETGTPFMLYKDACNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVR 630 GV+ SSNLC EI S+ +ETAVCNL S++L A ++ +++DKL + Sbjct: 421 GVIKSSNLCCEIVEYSAPDETAVCNLASLSLPAFIETSEDGQTQWYNFDKLHEIAKVVTH 480 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ VID N + +E A+ SN HR + LG+ G A +L IP+ S EA E+ + E I Sbjct: 481 NLNQVIDRNYYPVESARNSNMRHRPVALGVQGLADAFMILRIPFDSQEAKELNIQIFETI 540 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+ S ELA E G Y +F+GS QG+ D + D+ T W+ LK Sbjct: 541 YHAALERSNELAVEHGPYETFEGSPASQGILQFD-------MWDK---KPTDLWDWETLK 590 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L Sbjct: 591 AKIVKTGLRNSLLLAPMPTASTSQILGNNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDL 650 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +W++AM S + +GSI N+ IP LK ++ T +E+ +IE A+ R +IDQ+ Sbjct: 651 VDLGIWNDAMKSHIISDNGSIQNLPNIPQKLKDLYKTVWELSQKTIIEMAADRACYIDQS 710 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 QSLN+++ P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 711 QSLNVHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757 >gi|255587584|ref|XP_002534320.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] gi|223525502|gb|EEF28063.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] Length = 776 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 273/739 (36%), Positives = 416/739 (56%), Gaps = 54/739 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR V++ ++K Sbjct: 38 LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y + R G+KA L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKVMYNHFNER---SGLKAPLIADDVYNIIMKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRVA+G+ + + ++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---VIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W++F P+E L D +G+EFE Y YER+ Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSVFCPNEAPGLADCWGEEFERLYTQYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++L ETG P++ FKD N +S QQ++G + SSNLCTEI +S Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMVFKDTSNRKSNQQNLGTIKSSNLCTEIIEYTSP 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 ETAVCNL SI L N FD+DKLA L+ Sbjct: 439 TETAVCNLASIALPRFVREKGVPMESHPSKVVGSRGSKNRYFDFDKLAEVTEVVTCNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + +E AK+SN HR IG+G+ G A LL + + SPEA ++ E E I +HA Sbjct: 499 IIDVNYYPVENAKRSNFRHRPIGIGVQGLADAFILLGMAFDSPEAQQLNKEIFETIYYHA 558 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS E+A G Y ++ GS +G+ D G+ +SR W+ L++ + Sbjct: 559 LKASSEIAGRDGPYETYDGSPVSKGILQPDMWGVTP----------SSRWSWNALREMIF 608 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + + Y DGS+ I IPDDLK I+ T +EI L++ A R +IDQ+QSLN Sbjct: 669 LWSPTLKNKIIYEDGSVQKIPEIPDDLKLIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728 Query: 875 LYLDEPSGKKLDFIYRQAW 893 +++D+P+ KL ++ AW Sbjct: 729 IHMDQPNFGKLTSLHFYAW 747 >gi|221125333|ref|XP_002156212.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain isoform 2 [Hydra magnipapillata] Length = 809 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/763 (37%), Positives = 431/763 (56%), Gaps = 40/763 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + +S + + + MY G++ +L+T + ++ K P+YA + AR Sbjct: 39 IKKLCFGLDMKYISPYAITWKVIRGMYPGITTVELDTLAAEVAASMTTKHPDYALLAARI 98 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHESMMDFDLVYL 281 + L +E KK + PE C + E V +++ ++ D + Sbjct: 99 AISNLHKET----KKKFSDTIADLYNYISPEINMNCPMVSEEV-YQIVQKNKERLDGAII 153 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 ++ RDF + Y G + L Y L ING E PQ MRV++G+ E A+E Sbjct: 154 SS-----RDFEYHYFGFKTLERSYLLKINGKTAERPQHMLMRVSVGI---HGEDLDAAIE 205 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGL 400 YNL+S F ++PTLFNSGT PQ+SSCFL + D + GIF +++ A+++K++GG+ Sbjct: 206 TYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMQSDSIEGIFDTVKQCAIISKWAGGI 265 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G +R G++I GTNG S G+IP L+V N+TA V+QGG KR G++ YLE WH D+ Sbjct: 266 GLHIHCIRSSGSYIAGTNGHSNGIIPMLRVFNNTARYVDQGGNKRPGSIAIYLEPWHADI 325 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLDL+KNTG + +R D+ W+PDLFM+RV + W+L P E L D YG+EFE Sbjct: 326 IDFLDLKKNTGKEEQRARDLFFGLWVPDLFMRRVEEKGMWSLMCPHECPGLADCYGEEFE 385 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y+ YE + + ++I A LW +L ETG P++ +KD CN +S Q+++G + Sbjct: 386 ELYQKYESEG-----RYRKQIPAQKLWFAILESQTETGTPYMLYKDSCNRKSNQKNLGTL 440 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634 SNLCTEI +SS+E AVCNL SI++ + N +D+ KL + R L+ Sbjct: 441 KCSNLCTEILEYTSSDEIAVCNLASISVNSFVTVNSETTGVYDFKKLKYVTKVITRNLNK 500 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID N + + +A+ SN HR IG+G+ G A L+ P+ S EA + + E I + A Sbjct: 501 VIDRNFYPVPEARNSNMRHRPIGIGVQGLADAFILMRFPFESDEASLLNKQIFETIYYGA 560 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA++ G Y S++GS +G+ D + T+ W ELK ++ Sbjct: 561 LEASCELAEKDGTYESYQGSPISKGILQYDMWNVTP----------TNLWNWAELKAKIA 610 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F VVN L+ +L + Sbjct: 611 LHGVRNSLLVAPMPTASTAQILGNNESIEPYTNNIYSRRVLSGEFQVVNKHLMKDLTDLN 670 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LWD+ M + L H+GS+ NI+ IP D+K ++ TA+EI LI A+ R +IDQ+QS N Sbjct: 671 LWDDNMKNTLIAHNGSVQNIDEIPADIKVLYKTAWEIKQKSLINMAADRGAFIDQSQSFN 730 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++L EPS L I+ W GLKT YYLR++ A + + T+ Sbjct: 731 VFLGEPSFSTLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTV 773 >gi|313768128|ref|YP_004061559.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599735|gb|ADQ91756.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1] Length = 748 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 274/746 (36%), Positives = 424/746 (56%), Gaps = 44/746 (5%) Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 E S DV+ + + + ++YDG+ +++T +I +P+Y + R Sbjct: 27 EGLSETVDVTK--IAQQVFSSIYDGIKTPEIDTLSAEICIGMITSDPDYEILATRI---- 80 Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287 + + K+ H M+ L+ KA ++ +++ + +D+K Sbjct: 81 ----TASNIQKRAANNFHIAMRKLH------------KAGIVTHEVLEVS-SKVKDDIKP 123 Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ERDF F Y GL+ L Y I+G IE PQ +MRVA+G+ + + +E Y LS Sbjct: 124 ERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYLYMRVAIGIHGHDID---HVLETYEALS 180 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTP 406 F+ +TPTLFN+GT PQ+SSCFL +D + GI+ ++E A ++K++GG+G Sbjct: 181 KGLFIHATPTLFNAGTPRPQMSSCFLIANKEDSIDGIYDTVKECARISKWAGGIGLHVHD 240 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 VR +HI GTNG S G+IP L+V N TA VNQ G+RKG++ YLE WH D+ +FL++R Sbjct: 241 VRANKSHIRGTNGTSDGIIPMLRVYNSTARYVNQAGRRKGSIAVYLEPWHADILDFLEIR 300 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 N GD+ R D+ +A WIPDLFMKRV + W+LF PD+ L D+YGKEFE YE YE Sbjct: 301 LNQGDEEARCRDLFSAMWIPDLFMKRVESDGNWSLFCPDQAKGLSDVYGKEFEDLYEKYE 360 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + ++ + A +W+ ++ ETG P++ +KD CN +S +HVG + SSNLCT Sbjct: 361 SEGIATKV-----VPASEIWKAIIKSQSETGTPYMLYKDACNEKSNHKHVGTIKSSNLCT 415 Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI + EETAVCNL SI L + N+F++++L + R L+ VID N + E Sbjct: 416 EILEFTDKEETAVCNLASIALPKYVDVEKNEFNHEELHRVTKMVTRNLNKVIDKNFYPTE 475 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 K+SN HR IG+G+ G +L + + S E+ ++ + E I ++ +S ELA+ Sbjct: 476 NGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESRKLNIDIFETIYHASLESSCELAEM 535 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y +FKGS + +G+ D RD + R W+ ++K VK G NS + Sbjct: 536 YGPYETFKGSPFSKGILQFDMWD-----RDP---KFSGRYDWNAMRKLVKK-GTMNSLLL 586 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ + I G ++ +P N+Y++ ++G+F VVN LVN+LK+R LW + M + Sbjct: 587 APMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVNDLKERGLWSKEMKDLM 646 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 +GS+ NI IPDDLK+++ T +E+ +I+ A+ R +IDQ+QS+NL+++ P+ K Sbjct: 647 VKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMAADRGVYIDQSQSMNLFVESPTISK 706 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT 909 L ++ AW GLKT YYLRS++ + Sbjct: 707 LSSMHMYAWKTGLKTGMYYLRSKAKS 732 >gi|258566183|ref|XP_002583836.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus reesii 1704] gi|237907537|gb|EEP81938.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus reesii 1704] Length = 884 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/772 (36%), Positives = 433/772 (56%), Gaps = 48/772 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ +K + LY Y+ S +++V Sbjct: 82 AVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNNRPAPMISQKTYEIVMKHS 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + EK Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDDIEK--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNL+S +F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K + Sbjct: 186 AIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA Y+E WH Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYIEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG Sbjct: 306 SDVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG + I A LW +L ETG+P++ +KD CN +S Q+++ Sbjct: 366 EFEALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDN 634 G + SSNLCTEI ++ +E AVCNL S+ L + ++D+ KL + +R L+ Sbjct: 421 GTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLIRNLNK 480 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + + +A+KSN HR I +G+ G A L +P+ SPEA ++ + E I + Sbjct: 481 IIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNTQIFETIYHAS 540 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++AS +LA+ G Y +++GS QG+ D + + WD LKK + Sbjct: 541 LTASCDLAKIDGPYETYEGSPVSQGILQYDMWNVTP----------SDLWDWDSLKKEIA 590 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 591 KHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QSLN Sbjct: 651 LWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLN 710 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 ++L EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|323098671|gb|ADX22908.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] Length = 771 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 279/761 (36%), Positives = 435/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG R G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGXXRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFXLLNYPFDSPEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR+ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTL 750 >gi|255323617|ref|ZP_05364747.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter showae RM3277] gi|255299331|gb|EET78618.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter showae RM3277] Length = 791 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/831 (36%), Positives = 447/831 (53%), Gaps = 122/831 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA +GL +VS + + D ++ +++ LI Sbjct: 1 MKVLKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLI- 59 Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-Y 259 +T +EK PN+ V AR L L +H++ R Y Sbjct: 60 --KTAVEKIDIDRPNWTFVAARLFLYDL----------------YHKVTGFSGYNHLRDY 101 Query: 260 IEEGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317 +++G KA R++ +DL L + ++ ERD F YLG++ LYDRY + +G+ IE+P Sbjct: 102 LQKGEKAGRVIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELP 161 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q FM +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + P Sbjct: 162 QHMFMAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTP 221 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVA Sbjct: 222 DNIEGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVA 281 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +NA Sbjct: 282 VDQLGTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENA 341 Query: 498 GWTLFSPDEVSDLHDLYGKEFE---IAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 W+LF P EV+DL DLYG EFE IAYEN E+ + A LW+K+LT F Sbjct: 342 RWSLFDPAEVADLCDLYGDEFEARYIAYENDEKIQK-------NVVMAKELWKKILTSYF 394 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SE 595 E+G P++ FKD N +P H G++ SSNLCTEI N+ E Sbjct: 395 ESGMPFLCFKDNANKANPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSEQLFDEE 454 Query: 596 ETAVCNLG------SINLLAHFANNQ-FDYDKLASTIRTAV------------------- 629 E + G ++ L Q F +K + +TAV Sbjct: 455 EDVTVDSGITKKAKKLSALDSIDGKQIFIVEKESVEGKTAVCNLASINLSKINKKEDIER 514 Query: 630 ------RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 R+LDNVID+N + +K K +N R+IGLG+MG L + + S E + + Sbjct: 515 VVPIAVRMLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALI 574 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRT 741 D ME IS++AI AS LA E+G Y F+GS W +GV PID+ A+ + D + Sbjct: 575 DSVMENISYNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDE 634 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + W +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG Sbjct: 635 NACDWSKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG---- 690 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 MI ++ + + + + + A+E+D L+ + + Sbjct: 691 ------------------MIPNV---------VPNLSPETWQFYTPAYELDQRVLVRAGA 723 Query: 862 RRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 RQKWIDQ QSLN++ LD+ SG L IY AW +GLK+TYYLRS S S Sbjct: 724 IRQKWIDQGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDS 774 >gi|57505360|ref|ZP_00371289.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter upsaliensis RM3195] gi|57016496|gb|EAL53281.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter upsaliensis RM3195] Length = 789 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 306/825 (37%), Positives = 438/825 (53%), Gaps = 111/825 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G N +++ +A L+ VS + + DG++ +++ LI Sbjct: 1 MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L YKK + EYF R +EG Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFERGEKEG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322 R+L +DL L +K ERD F YLG++ LYDRY + + IE+PQ FM Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKVEPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E + ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + D++ G Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G +I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGNIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI D+FMKR+ N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + DL +LYG+ FE YE YE+ D +K I A LW+K+L FETG P++ Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEK--DDSIVKEI--IDAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLG 603 FKD N +P H G++ SSNLCTEI N+ EE + + G Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVIIDGG 462 Query: 604 ------------SINLLAHFANNQFDYD--------------------KLASTIRTAVRV 631 SIN F +F D LA + A+R+ Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E DE ME +S Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN----RTSRLPWD 747 + AI AS LA E+G+Y FKGS W +G+FPID + +E L + S WD Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPID---VASEKAKALTLRGGLFAQSSCDWD 639 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 640 QLRQKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNLN 699 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 E Q + A+E+D L+++A+ R KWI Sbjct: 700 LETWQ-------------------------------YYTPAYELDQKILVKAAAVRGKWI 728 Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 DQ QSLN++ LD+ SG L+ IY A +G+K+TYYLRS S S Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSESPDS 773 >gi|149194866|ref|ZP_01871960.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter mediatlanticus TB-2] gi|149135025|gb|EDM23507.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter mediatlanticus TB-2] Length = 813 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 303/857 (35%), Positives = 452/857 (52%), Gaps = 130/857 (15%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P + ++ DG + ++ + AC GL V + + DG++ +++ L Sbjct: 3 PGITVIKRDGRREPLDISKIRKYTKAACEGLDGVDYSELELDAKLQFRDGITTEEIQDTL 62 Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ I+ +PN+ V AR L L V T + EYF E Sbjct: 63 IKTAVDKIDIDKPNWNFVAARLFLYDLYHRV-----------TGYTGYNHLREYF----E 107 Query: 262 EGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 G +A R+L +DL L + +K ERD F YLG++ LYDRY + + IE+PQ Sbjct: 108 RGERAGRILPGLKEKYDLDDLNSYIKPERDLQFTYLGIKTLYDRYIIKDKENNPIELPQQ 167 Query: 320 FFMRVAMGLALKET--------EKEK------------RAVEFYNLLSSFHFMCSTPTLF 359 FM VAM LA ET +K+K A +FY+++S F M +TPTL Sbjct: 168 LFMGVAMFLAQNETNPNSIPNEDKDKVDLNNPKSIRGYWAKKFYDVISKFEVMVATPTLS 227 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N+ T QLSSC++ ++ D++ GIF +E A+L+K+ GG+G D++ +R LG+ I Sbjct: 228 NARTTRHQLSSCYVGSMNDNIEGIFDDYKEMALLSKFGGGIGWDFSKIRALGSFIDNHKN 287 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + GVIP+LK+ ND A+AV+Q G RKGA+ Y+E WH+D+ +FLDL+KN+G++RRR HD+ Sbjct: 288 AAGGVIPWLKITNDIAIAVDQLGTRKGAIAVYIEPWHMDILDFLDLKKNSGEERRRAHDL 347 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV ++ WTLF P E DL +LYG+EFE Y YE + D + RK Sbjct: 348 FPALWIPDLFMKRVEEDGLWTLFDPYETGDLTNLYGEEFEKKYIEYENREDITK----RK 403 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----------- 588 + A LW+K+L +ETG+P++ FKD N R+ H G++ SSNLCTEI Sbjct: 404 VKAKELWKKILLEYYETGNPFLCFKDNANKRNQNDHSGIIRSSNLCTEIFQNTEPNHYKV 463 Query: 589 --TLNSSSEE------TAVCNLGSINLLA--------HFANNQFDY-------------- 618 T SEE +LG + ++ H+ N + Y Sbjct: 464 KVTFEDGSEEYFNEDDDVKVSLGDVEVVVKGKKITSLHYINGKKVYIVEKVPFDGKTAVC 523 Query: 619 -------------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 +K+A + A+R+LDNVID+N + + K K +N +RAIGLG MG Sbjct: 524 NLASVNLSKVNTPEKIAEVVPIAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQ 583 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L I + S E +++ DE E IS+ AI S ELA+E+GAY F+GS W +G+ PID+ Sbjct: 584 LLAERQIFWGSDEHLKLIDEIFEGISYWAIKTSAELAEEKGAYPEFEGSRWSKGILPIDT 643 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 A+ E + + W L+++VK GMRN MAIAPT++I+ + G +Q+I+P Sbjct: 644 ANEEAKKLVERDLFSAMQYDWKSLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPV 702 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 Y+ + + N+SG VV + + D + Sbjct: 703 YKRKWYEENLSGLIPVV-------------------------------VPNLSADTYMFY 731 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYL 903 A+E+D L+++A+ RQKWIDQ QSLN+++ D+ SG+ L+ IY W +GLK+ YYL Sbjct: 732 TPAYELDQRILVKAAAIRQKWIDQGQSLNIFITTDKASGRYLNEIYMLGWKLGLKSFYYL 791 Query: 904 RSRSATSVEKSTLKGVD 920 RS+S E+ + V+ Sbjct: 792 RSQSPEVKEEVMDRSVE 808 >gi|156043867|ref|XP_001588490.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum 1980] gi|154695324|gb|EDN95062.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum 1980 UF-70] Length = 910 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 273/747 (36%), Positives = 430/747 (57%), Gaps = 45/747 (6%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 + + + + +Y G++ +L+ ++ + P+YA + AR + L Sbjct: 34 IDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARIAVSNL------- 86 Query: 236 VYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKARLLHESMMDFDLVYLANDLKYE 288 +K+ +K H ++ LY + +E + + HE ++ +VY + Sbjct: 87 -HKQTKKQFSHVIRDLYQYTNPKNGKASPMISKETFECVMRHEEELNSAIVY-------D 138 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RDF ++Y G + L Y L ++G E PQ MRVA+G+ + E A+E YNL+S+ Sbjct: 139 RDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIMRVAVGIHGDDIES---AIETYNLMSN 195 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 +F ++PTLF++GT QLSSCFL + +D + GI+ L+ AM++K +GG+G + + Sbjct: 196 KYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSIDGIYDTLKICAMISKNAGGIGLNIHRI 255 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R GA+I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH DV EFLDLR Sbjct: 256 RATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHADVFEFLDLR 315 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KN G + R D+ A WIPDLFMKRV +N WTL P+E L D+YG+EFE YE+YE Sbjct: 316 KNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMCPNECPGLADVYGEEFEALYESYE 375 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + A +G + I A LW +L ETG+P++ +KD CN +S Q+++G + SSNLCT Sbjct: 376 K-AGKGR----KTIKAQKLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGTIRSSNLCT 430 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI S+ +E A CNL SI L N+ +D+ KL ++ VR L+ +IDIN + ++ Sbjct: 431 EIVEYSAPDEVACCNLASIALPTFVNMNEGTYDFQKLHEVVQVVVRNLNKIIDINYYPVQ 490 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A++SN HR I +G+ G A L +P+ SPEA + + E I A+++SVE+A+E Sbjct: 491 EARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKHLNIQIFETIYHAALTSSVEIAKE 550 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y +++GS +G D G+ + WD LK+ +K G+RNS + Sbjct: 551 LGPYETYQGSPVSKGELQYDMWGVTP----------SDLWDWDSLKQSIKQHGIRNSLLV 600 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L LW + M + + Sbjct: 601 APMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRI 660 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 GSI NI IP D+K ++ T +EI +++ A+ R +IDQ+QS+N+++ +P+ K Sbjct: 661 IADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSMNIHMKDPTMGK 720 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATS 910 + ++ W +GLKT YYLR+ +A++ Sbjct: 721 ITSMHFAGWKLGLKTGMYYLRTMAASA 747 >gi|195146786|ref|XP_002014365.1| GL19156 [Drosophila persimilis] gi|194106318|gb|EDW28361.1| GL19156 [Drosophila persimilis] Length = 821 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 296/800 (37%), Positives = 445/800 (55%), Gaps = 41/800 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L D + ++ + +Y G++ +L+ Sbjct: 11 KLFVVKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVSITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCR 258 S L +YA + AR + L +E V + V++ K + E P Sbjct: 71 AAEISAGLTCNHADYAILAARIAVSNLHKETKKVFSDVFEDLFKNINRETNTASP----- 125 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 + E H +++ + L + + Y+RDF + Y G + L Y L ING E PQ Sbjct: 126 MVSE------FHYNIVKNNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGKIAERPQ 179 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377 MRVA+G+ + + AVE YNLLS +F ++PTLF + T PQLSSCFL T+ Sbjct: 180 HMLMRVALGIHGDDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMNS 236 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GIF ++++ A+++K +GG+G + +R G I GTNG S G++P L+V N+ A Sbjct: 237 DSIEGIFKSVEQCALISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARY 296 Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QGG KR GA YLE WH DV EFLDL++NTG + R D+ A WIPDLFMKRV N Sbjct: 297 VDQGGGKRPGAFAIYLEPWHSDVFEFLDLKRNTGKEENRARDLFYALWIPDLFMKRVEAN 356 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+L P + L D++G++FE Y YE++ + R + A ALW ++ ET Sbjct: 357 ESWSLMCPHKCPGLQDVWGEKFEELYVKYEQEG-----RANRTVEAQALWFAIIESQVET 411 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615 G+P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L + Sbjct: 412 GNPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNMFVTPEKT 471 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +D+ KL +T + L+ +IDIN + + +AKKSN HR IG+G+ G AL L+ PY Sbjct: 472 YDFKKLKEVTKTVAKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGLADALILMRFPYE 531 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + E I F A+ AS ELA+E G Y +++GS +G+ D + D+ Sbjct: 532 SEEAGLLNQQIFETIYFGALEASCELAEEFGVYETYEGSPVSKGILQYD-------MWDK 584 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 T+ W LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y + + Sbjct: 585 TP---TNLWDWQSLKEDIKKHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVL 641 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN L+ +L + DLWD+ M + + GSI +IE IP ++ ++ T +EI Sbjct: 642 SGEFQVVNHHLLRDLTELDLWDDEMKNKIISSRGSIQDIETIPQKVRDLYKTVWEISVKS 701 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + + Sbjct: 702 TIKMAADRGAFIDQSQSFNVHVAEPNYGKLTSIHFFSWKAGLKTGMYYLRTKPAANAIQF 761 Query: 915 TLKGVDGKLNAVPVTDPNSS 934 T VD K A + D N S Sbjct: 762 T---VDKKQAASALNDLNGS 778 >gi|148224574|ref|NP_001084312.1| ribonucleotide reductase M1 [Xenopus laevis] gi|49256098|gb|AAH74185.1| RRM1 protein [Xenopus laevis] Length = 797 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 274/757 (36%), Positives = 435/757 (57%), Gaps = 32/757 (4%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLAAETAATLTTKHPDYAILAARV 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L +E ++ + ++ + L ++ E + L ++ ++ ++Y Sbjct: 82 AVSNLHKET-KKIFSDVMEDLYNYVNPLNSKHSPMVSRETLDIVLANKDRLNSSIIY--- 137 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 +RDF++ + G + L Y L ING E PQ MRV++G+ + + A+E Y Sbjct: 138 ----DRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKTDIDA---AIETY 190 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 NLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K +GG+G Sbjct: 191 NLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGIGV 250 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461 + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH DV + Sbjct: 251 AVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDVFD 310 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLDL+KNTG + +R D+ A WIPDLFMKR N W+L P E L +++G +FE Sbjct: 311 FLDLKKNTGKEEQRARDLFYAMWIPDLFMKRAENNLDWSLMCPHECPGLEEVWGDKFEEL 370 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 YE YER+ + + + A +W ++ ETG P++ +KD CN +S QQ++G + Sbjct: 371 YEKYEREG-----RTRKVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIKC 425 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEI +S +E AVCNL S+ L + FD+ KLA + VR L+ +I+IN Sbjct: 426 SNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFKKLADVTKVIVRNLNKIIEINF 485 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + +A+ SN HR IG+G+ G A L+ P+ S +A + + E I + A+ +S E Sbjct: 486 YPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKAQMLNKQIFETIYYAALESSCE 545 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+E G Y +++G +G+ D + T W LK+++ G+RN Sbjct: 546 LAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGIRN 595 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L ++ LW+E M Sbjct: 596 SLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNEEM 655 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + ++GSI N+ IP DLK+++ T +EI +I A+ R +IDQ+QSLN+++ EP Sbjct: 656 KNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIHVAEP 715 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + KL ++ W GLKT YYLR+R A + + TL Sbjct: 716 NYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|50305185|ref|XP_452551.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641684|emb|CAH01402.1| KLLA0C07887p [Kluyveromyces lactis] Length = 875 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 296/796 (37%), Positives = 440/796 (55%), Gaps = 55/796 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + + + + +Y+G++ +L+ + + P+YA + AR Sbjct: 22 VSRLCYGLDAKHIDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTIHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L +K+ K + LY + V R S M D VY Sbjct: 82 AISNL--------HKQTTKQFSQVVDDLY---------QWVNPRTGIHSPMISDEVYKIV 124 Query: 281 ------LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 L + + Y+RDF F Y G + L Y L I+G E PQ MRVA+G+ + E Sbjct: 125 MDNKDTLNSAIVYDRDFQFNYFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGNDIE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 R +E YNL+S +F ++PTLFN+GT HPQ+SSCFL + +D + GI+ L+E AM+ Sbjct: 185 ---RVLETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKEDSIEGIYDTLKECAMI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA Y+ Sbjct: 242 SKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMIRVFNNTARYVDQGGNKRPGAFALYI 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WTLFSP+E L D Sbjct: 302 EPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNQDWTLFSPNEAPGLPD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG+EFE YE YER+ RG + + A LW +L ETG P++ +KD CN++S Sbjct: 362 AYGEEFEEMYERYEREG-RGR----KTVKAQKLWYAILEAQTETGTPFMLYKDACNLKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIR 626 Q+++G + SSNLC EI S ETAVCNL SI L A ++++KL S + Sbjct: 417 QKNLGTIKSSNLCCEIVEYSDPTETAVCNLASIALPAFIERSTDGKTQTYNFEKLHSIAK 476 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 R L+ +ID N + +E A++SN HR I LG+ G A +L +P+ S EA ++ E Sbjct: 477 VLTRNLNRIIDRNYYPVETARRSNMRHRPIALGVQGLADAFMMLRLPFDSEEAKKLNIEI 536 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E I A AS+ELA+E G Y +F GS QG D G T+ W Sbjct: 537 FETIYHGACEASMELAKEEGHYETFPGSPASQGQLQFDLWG----------KTPTALWDW 586 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 + LK+++K GMRNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L Sbjct: 587 NTLKEQIKLNGMRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYL 646 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +++L +WDEAM S + +GSI N+ IP +LK ++ T +E+ +I+ A+ R + Sbjct: 647 LHDLVDLGIWDEAMKSHIIADNGSIQNLPNIPQELKDLYKTVWELSQKHIIDMAADRAAY 706 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA 925 IDQ+QSLN+++ P+ KL ++ W GLKT YYLR+++A++ + T+ + A Sbjct: 707 IDQSQSLNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDKSVAEQAA 766 Query: 926 VPVTDPNSSTHSLGIP 941 V D + + IP Sbjct: 767 NSVVDLSKLNRPVYIP 782 >gi|323098474|gb|ADX22712.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] Length = 771 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 279/761 (36%), Positives = 435/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG R G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGXXRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNL S+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA ++ + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR+ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTL 750 >gi|156836703|ref|XP_001642400.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM 70294] gi|156112918|gb|EDO14542.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM 70294] Length = 874 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 281/764 (36%), Positives = 424/764 (55%), Gaps = 41/764 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + C GL + V +Y+G++ +L+ ++ + P+YA + AR Sbjct: 22 ISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTIELDNLAAETAAYMTTVHPDYATLAARL 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L ++ T ++ + +H + ++ EE + H+ ++ +VY Sbjct: 82 AISNLHKQT-TKLFSQVVDDLYHYINPENSKHAPLVSEEVYNIVMEHKDELNSAIVY--- 137 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 +RDF F Y G + L Y L + G E PQ MRVA+G+ ++ E A+E Y Sbjct: 138 ----DRDFQFNYFGFKTLERSYLLRMKGEVAERPQHLIMRVAIGIHGEDIEA---AIETY 190 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 NL+S +F ++PTLFN+GT HPQ+SSCFL + DD L GIF L+E AM++K +GG+G Sbjct: 191 NLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSLEGIFDTLKECAMISKTAGGIGL 250 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461 +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA+ YLE WH D+ + Sbjct: 251 HIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGNKRPGAMALYLEPWHADIFD 310 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+D+RKN G + R D+ A WIPDLFMKRV +N WTLFSP E L ++YG+EFE Sbjct: 311 FIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGDWTLFSPSEAPGLEEVYGEEFEAL 370 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y Y + RG + I A LW +L ETG P++ +KD CN +S +++G + S Sbjct: 371 YNRYVAEG-RGR----KTIKAQKLWYSILEAQTETGTPFMLYKDACNTKSNHKNLGTIKS 425 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNV 635 SNLC EI S+ +ETAVCNL SI L A + +++ KL + R L+ V Sbjct: 426 SNLCCEIVEYSAPDETAVCNLASIALPAFIEVSEDGRSQTYNFKKLHEISKVVTRNLNKV 485 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + +E+A+ SN HR I LG+ G LL IP+ S EA E+ E + A+ Sbjct: 486 IDRNYYPVEEARNSNFRHRPIALGVQGLADTFMLLRIPFESKEAKELNTHIFETMYHAAL 545 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELKKRV 753 AS ELA++ G Y S+ S QGV D NR WD LK+++ Sbjct: 546 EASCELAEKEGYYESYPNSPVSQGVLQYD------------MWNRKPSDLWDWATLKEQI 593 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 K G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L Sbjct: 594 KKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRVLSGEFQIVNPYLLRDLVDL 653 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +WDE+M L +GSI N+ IP +LK ++ T +EI +I+ A+ R +IDQ+ S+ Sbjct: 654 GIWDESMKQHLITDNGSIQNLPNIPQELKDLYKTVWEISQKTIIDMATDRSAFIDQSHSM 713 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+++ P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 714 NIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757 >gi|50557402|ref|XP_506109.1| YALI0F31735p [Yarrowia lipolytica] gi|49651979|emb|CAG78922.1| YALI0F31735p [Yarrowia lipolytica] Length = 892 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 295/814 (36%), Positives = 445/814 (54%), Gaps = 55/814 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 KL ++ DG S ++ ++ C GL V + + +Y+G+S +L+ Sbjct: 3 KLFVIKRDGRKESVQVDKITARIKRLCYGLDPDHVDPIQITLKIASGIYEGVSTIELDNL 62 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ + P+YA + AR + L ++ K Q + Q +Y Y Y+ Sbjct: 63 AAETAAYMTTLHPDYAILAARIAVSNLHKQT------KKQFS-----QVVYDLY--HYVN 109 Query: 262 EGVKARLLHESMMDFDLVYLAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 K S +D V D + Y+RDF + Y G + L Y L +NG+ E Sbjct: 110 PRNKKHSPMVSKELYDTVQANADELNGAILYDRDFTYNYFGFKTLERAYLLRVNGAVAER 169 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ MRV++G+ + RA+E YN +S +F ++PTL+N+GT PQ+SSCFL + Sbjct: 170 PQQMIMRVSVGI---HGDNIARAIETYNYMSQKYFTHASPTLYNAGTPQPQMSSCFLVNM 226 Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 DD + GI+ L+ A+++K +GG+G +R G++I GTNG S G++P L+V N+TA Sbjct: 227 KDDSIDGIYDTLKTCALISKSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVYNNTA 286 Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+QGG KR GA YLE WH D+ EF +LRKN G + R D+ A WIPDLFM+RV Sbjct: 287 RYVDQGGNKRPGAFAMYLEPWHDDIFEFCELRKNHGKEEIRARDLFLALWIPDLFMERVE 346 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 QNA WTL P+E L D+YG EF+ YE YE++ RG R I A LW +L Sbjct: 347 QNAEWTLMCPNECPGLDDVYGDEFKQLYEQYEKEG-RGR----RTIPAQKLWYHILDCQT 401 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612 E+G+P++ +KD CN +S Q+++G + SSNLC EI SS +E AVCNL SI L Sbjct: 402 ESGNPFMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYSSPDEVAVCNLASIALPTFVTRD 461 Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N+ +D+ KL + VR L+ +ID N + + +AKKSN HR I LG+ G L Sbjct: 462 DTNSFYDFKKLHDIAKVIVRNLNAIIDRNYYPVPEAKKSNMRHRPIALGVQGLADTFMAL 521 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +P+ S EA ++ + E I A+ AS E+A E GAY +F+GS +G D L Sbjct: 522 RLPFESEEAKKLNIQIFETIYHGAVEASYEMALEDGAYETFQGSPASKGDLQFD---LWN 578 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 EL WD+LK ++ GMRNS +A PTA+ + I G ++ +P N+Y Sbjct: 579 VTPSEL-------WEWDDLKAKIMKTGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 631 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + ++G+F +VN +L+ +L + LW+E M + + +GS+ NI IP ++K ++ T +E Sbjct: 632 SRRVLAGEFQIVNPWLLKDLVEVGLWNETMKNRIVADNGSVQNIPNIPQEIKDLYKTVWE 691 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +IE A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+ +A Sbjct: 692 ISQKRIIEMAADRSPFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAA 751 Query: 910 -----SVEKSTLKGVDGK-----LNAVPVTDPNS 933 ++++ LK +D LN P + NS Sbjct: 752 APIQFTIDQEALKTIDSSTAKAMLNKKPYQEINS 785 >gi|313683663|ref|YP_004061401.1| ribonucleoside-diphosphate reductase class ia alpha subunit [Sulfuricurvum kujiense DSM 16994] gi|313156523|gb|ADR35201.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Sulfuricurvum kujiense DSM 16994] Length = 788 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 302/826 (36%), Positives = 447/826 (54%), Gaps = 120/826 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L I+ +G + +++ A GL +VS + + DG+ ++++ LI Sbjct: 2 LTIVKRNGRREPLDITKIQKYTSAAVKGLSNVSQSELEVDAQIQFRDGIHSNEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V +R L L V T Y Q YF R E Sbjct: 62 TAVDKIDIDSPNWTFVASRLFLYDLYHRVNGFTGYGSLQS------------YFERGEGE 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 G R+L ++L L + ERD F YLG++ LYDRY + G IE+PQ F Sbjct: 110 G---RILLGLKEKYNLADLDAYIVPERDLEFNYLGVKTLYDRYLIKDRKGDPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M VAM LA E++++ A +FY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAVAMFLAQNESDRQGWAKKFYDMMSKFEVMMATPTLSNARTTRHQLSSCYIGSSPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF A +E A+L+K+ GG+G DWT VR +G+ I G + G +PFLK+ ND A+AV+Q Sbjct: 227 GIFDAYKEMALLSKFGGGIGWDWTQVRAMGSFIDGHKNAAGGTVPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH+DV++FLD++KN+G++RRR HD+ A WI D+FMKRV ++ WT+ Sbjct: 287 GTRKGAIAVYLEPWHMDVKDFLDVKKNSGEERRRAHDLFPALWINDMFMKRVVEDGIWTM 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P +V +L +LYG FE Y E + D K K A LW+K+LT FETG P++ Sbjct: 347 FDPFDVKELSELYGDAFEKRY--LELEQDPSIPKEHSK--AKDLWKKILTSYFETGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------------- 592 FKD N +P H G++ SSNLCTEI N+ Sbjct: 403 CFKDSANRSNPNDHFGIIRSSNLCTEIFQNTQPNHYLIKIKFEDGSFVTYEEDEIVKVDS 462 Query: 593 -----SSEETAVCNLG----------------------SINLLAHFANNQFDYDKLASTI 625 +++ TA+ +LG S+NL + + D D++ + Sbjct: 463 GIEKPANKITALDSLGGRPIYIVEKEKVDGATAVCNLASVNL--SRVHTKEDIDRI---V 517 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A+R LDNVID+N + +EK K++N RAIGLG+MG L I + S E + DE Sbjct: 518 PVAIRALDNVIDLNFYPLEKVKRTNMRSRAIGLGVMGEAQMLAENRIVWGSQEHFDKVDE 577 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSR 743 ME +S++AI AS +LA E+G+Y+ ++GS W +G+ P+D AEV++ + Sbjct: 578 VMEAVSYNAIKASSDLAVEKGSYAEYQGSKWSRGILPMDHA--TAEVQNLVDRGGLFAPN 635 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 WDEL++ +K GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 636 YEWDELRETIKRQGMRNGYLMAIAPTSSISILTGTTQTIEPIYKRKWFEENLSGLIPVVA 695 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L D W + A+++D L+++A+ R Sbjct: 696 PKL-----SPDTW--------------------------SYYTPAYDLDQTILVKAAAIR 724 Query: 864 QKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QKWIDQ QSLN++ LD+ SGK L+ IY AW +GLK+TYYLRS+S Sbjct: 725 QKWIDQGQSLNIFITLDKASGKYLNDIYMLAWKLGLKSTYYLRSQS 770 >gi|310798516|gb|EFQ33409.1| ribonucleotide reductase [Glomerella graminicola M1.001] Length = 894 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 281/780 (36%), Positives = 435/780 (55%), Gaps = 52/780 (6%) Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y + + + + A + H+ +D Sbjct: 82 AVSNLHKQTKKQWSSVVSDLYHYVNPKNNKPSPMIAKDTY--------DAVMRHKEELDS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF ++Y G + L Y L ++G E PQ MRVA+G+ + E Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIMRVAVGIWGDDVE-- 184 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 R +E YNL+SS F ++PTLFN+GT QLSSCFL + +D + GI+ L+ AM++K Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIEGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S GV+P L+V N+TA V+QGG KR GA YLE Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGVVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV +FLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Y Sbjct: 304 WHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE YE YE Q +G + I A LW +L ETG+P++ +KD N +S Q+ Sbjct: 364 GEEFEALYEKYE-QMGKGR----KTIKAQKLWYAILEAQTETGNPFMLYKDAANRKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI + +E AVCNL S+ L N+ +D+ KL + VR L Sbjct: 419 NLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDYNEGVYDFQKLHEVTQVVVRNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + +++A+ SN HR IGLG+ G A L +P+ SPEA ++ + E I Sbjct: 479 NRIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARDLNKKIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A++ SV+LA+E G Y +++GS QG+ D + + WD LK++ Sbjct: 539 AALTMSVQLAREEGPYETYEGSPVSQGILQYDMWNV----------KPSDLWDWDALKEQ 588 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 589 IKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW +AM + + +GSI NI IP ++K ++ T +EI +++ A+ R +IDQ+QS Sbjct: 649 MGLWSDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWEISQRTVVQMAADRGAFIDQSQS 708 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAV 926 LN+++ +P+ K+ ++ W +GLKT YYLR+++A +V++ LK D + V Sbjct: 709 LNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADSAVGKV 768 >gi|157165034|ref|YP_001467815.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter concisus 13826] gi|112801827|gb|EAT99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter concisus 13826] Length = 791 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 301/824 (36%), Positives = 442/824 (53%), Gaps = 108/824 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA GL +VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKYTNEAVLGLNNVSLSELEVDAKIQFRDMITTEEIQQTLIK 60 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ PN+ V AR L L +V +H Y+ +G Sbjct: 61 TAVDKIDIDRPNWTFVAARLFLFDLYHKVTGF------NGYNH---------LKDYLAKG 105 Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 K R++ +DL L +K ERD F YLG++ LYDRY + +G IE+PQ F Sbjct: 106 EKVGRIIPGLKEKYDLEDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNELDSQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+K+ GG+G DW+ VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +N W+L Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P +VSDL DLYG+EFE Y YE + I A LW+K+LT FETG P++ Sbjct: 346 FDPAQVSDLCDLYGEEFEKRYLEYENDESIQK----NTILAKELWKKILTSYFETGMPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNL 602 FKD N +P H G++ SSNLCTEI N++ EE + Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDITVDS 461 Query: 603 G------SINLLAHFANNQ-FDYDKLASTIRTAV-------------------------R 630 G ++ L Q F +K + +TAV R Sbjct: 462 GITKKAKKLSALDSLKGKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +K K +N R+IGLG+MG L ++ + S E + + D ME I Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDE 748 S++AI S LA E+G Y F+GS W +G+ PID+ A+ + D+ + + WD+ Sbjct: 582 SYNAIYTSSNLAVEKGIYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDENVCDWDK 641 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG Sbjct: 642 LREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------- 690 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 MI ++ + + D + + A+E+D LI++ + RQKWID Sbjct: 691 -----------MIPNV---------VPNLSPDTWQFYTPAYELDQRILIKAGAIRQKWID 730 Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q QSLN++ LD+ SG L IY AW +GLK+TYYLRS S S Sbjct: 731 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDS 774 >gi|3914639|sp|O15909|RIR1_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase R1 subunit gi|2411477|gb|AAB70704.1| ribonucleotide reductase large subunit [Trypanosoma brucei] Length = 838 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 287/745 (38%), Positives = 421/745 (56%), Gaps = 43/745 (5%) Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 +G+S S L+ L ++ + K P+Y + R +T ++K ++ + Sbjct: 54 EGMSTSMLDELLAETAAYCVTKHPDYGLLAGRL--------AVTALHKTTTESVLDSFRV 105 Query: 251 LYPEYFCRYIEEGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305 L+ ++ + K A L+ E + D L + YERDF FEY G + L Y Sbjct: 106 LH-----EHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSY 160 Query: 306 FLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L ++ R +E PQ F+RVA+G+ ++ E+ K E Y+ +S F +TPTLFN Sbjct: 161 LLRVHKGRGVMEVVERPQQMFLRVALGIHGEDLERVK---ETYDYMSQGFFTHATPTLFN 217 Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +GT PQ+SSCFL + +D + GI+ L++ A+++K +GG+G +R G++I GTNG Sbjct: 218 AGTPFPQMSSCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNG 277 Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S G++P L+V N+TA V+QGG KRKGA YLE WH D+ FL L+KNTG + +R D Sbjct: 278 TSNGLVPMLRVWNNTARYVDQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARD 337 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + WIPDLFM+RV + WTL P+ L D YG+EF YE YER+ RG R Sbjct: 338 LFYGLWIPDLFMERVESHGTWTLMDPNTAPFLSDCYGQEFTDLYERYEREG-RG----VR 392 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I A LW +L ETG P++ +KD CN +S Q+++G + SNLCTEI +S +E A Sbjct: 393 TIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVA 452 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL SI L + FDY L + R L+ VID N + + +A+ SN HR +G+ Sbjct: 453 VCNLASIALPRFVKDGAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGI 512 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G A LL +P+A PEA ++ + E I A+ AS ELA++ G Y +FKGS + Sbjct: 513 GVQGLADAFALLSLPFAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASE 572 Query: 719 GVFPIDSIGLLAEVRDELAMNRTS------RLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 G D L E R MN S WD LK+RV +GMRNS +A PTA+ Sbjct: 573 GKLQFD---LWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTAST 629 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G ++ I+P N+YV+ +SG+F VVN LV EL + LW++ M + +GS+ Sbjct: 630 SQILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVS 689 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+ IP+ +++++ +EI LI+ A+ R ++IDQ+QSLNL+L P+ +L ++ + Sbjct: 690 GIKEIPERIRELYKVVWEIRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYS 749 Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL 916 W GLKT YYLRS+ A K TL Sbjct: 750 WKKGLKTGMYYLRSQPAADAIKFTL 774 >gi|151944785|gb|EDN63044.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces cerevisiae YJM789] gi|190405633|gb|EDV08900.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|259145984|emb|CAY79244.1| Rnr1p [Saccharomyces cerevisiae EC1118] gi|323333854|gb|EGA75244.1| Rnr1p [Saccharomyces cerevisiae AWRI796] gi|323348888|gb|EGA83125.1| Rnr1p [Saccharomyces cerevisiae Lalvin QA23] gi|323355271|gb|EGA87096.1| Rnr1p [Saccharomyces cerevisiae VL3] Length = 888 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 284/769 (36%), Positives = 429/769 (55%), Gaps = 52/769 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + C GL + + + V +Y+G++ +L+ + + P+YA + AR Sbjct: 22 ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280 + L +K+ K ++ LY RY+ G A ++ + + +++V Sbjct: 82 AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126 Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ ++ E Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEA- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + +D + GI+ L+E A+++K Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WTLFSP L D Y Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE Y YE++ RG + I A LW +L ETG P++ +KD CN +S Q+ Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628 ++GV+ SSNLC EI S+ +ETAVCNL S+ L A ++ +++ KL + Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ S EA + + E Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I ++ AS ELAQ+ G Y +F+GS QG+ D + D+ WD Sbjct: 538 TIYHASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+K + G+RNS MA PTA+ + I G ++ +P N+Y + +SG+F VVN +L+ Sbjct: 588 LRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L +WDE M L +GSI + +P +LK ++ T +EI +I A+ R +ID Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 Q+ SLNL+L P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 756 >gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti] gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti] gi|108873131|gb|EAT37356.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti] Length = 844 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 297/829 (35%), Positives = 453/829 (54%), Gaps = 51/829 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 K+ + DG + ++ +++ C GL D + ++ + +Y G++ +L+ Sbjct: 7 KMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYSGVTTQELDNL 66 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ T+ + +YA + AR + L +E KK H++ + E+ + Sbjct: 67 AAETAATMTTEHADYAILAARLAVSNLHKET-----KKHFSDVMHDLYMMENEHLKK--R 119 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + + ++ +MD L + + Y+RDF + Y G + L Y L I G +E PQ Sbjct: 120 TPMISEFHYKVIMDH-ADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHML 178 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ + A+E YNLLS +F ++PT+F + T PQLSSCFL T+ DD + Sbjct: 179 MRVAIGIHGEDIDA---AIETYNLLSERYFTHASPTMFAAATCRPQLSSCFLLTMSDDSI 235 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L++ A+++K +GG+G + +R G +I GTNG S G+IP L+V N+TA V+Q Sbjct: 236 EGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYIAGTNGISNGLIPMLRVYNNTAKYVDQ 295 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA YLE WH DV EFLDL+KNTG + R DM A WIPDLFMKRV N W Sbjct: 296 GGNKRPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANEDW 355 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 L P E L D +G+EFE Y +YE E + RK+ A LW ++ ETG P Sbjct: 356 CLMCPHECPGLSDTWGEEFEKLYTSYE-----AEGRYIRKVKAQDLWFAIIESQVETGVP 410 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618 ++ +KD CN +S QQ++G + SNLCTEI SS +E AVCNL SI L ++ +D+ Sbjct: 411 YMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDKTYDF 470 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + A + L+ +IDIN + + +AK+SN HR IG+G+ G A L+ PY S E Sbjct: 471 QKLKEVAKIATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSEE 530 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I + A+ AS ELA++ G Y ++ G +GV D Sbjct: 531 AQKLNQQIFETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYDMWN----------K 580 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W LK+++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+ Sbjct: 581 EPTDMWDWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGE 640 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN L+ +L + DLWD+ M + + ++GSI NIE IP ++ ++ T +EI I+ Sbjct: 641 FQIVNHHLLKDLTELDLWDDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCIK 700 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVE 912 A+ R +IDQ+QS N+++ EP+ KL I+ W MGLKT YYLR++ A +V+ Sbjct: 701 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVD 760 Query: 913 KS------------TLKGVDGKLNAVPVTDP--NSSTHSLGIPSSCTSD 947 K+ T+ G K+N T N + S P +SD Sbjct: 761 KTRLNQSNRINNSDTVNGSPSKMNGATSTPSKMNGTATSSASPVKASSD 809 >gi|6320914|ref|NP_010993.1| Rnr1p [Saccharomyces cerevisiae S288c] gi|730514|sp|P21524|RIR1_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 1; AltName: Full=Ribonucleotide reductase R1 subunit 1; AltName: Full=Ribonucleotide reductase large subunit 1 gi|93278634|pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I gi|93278635|pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I gi|93278636|pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279171|pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279172|pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279173|pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279174|pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279175|pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279176|pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279177|pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279277|pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed With Ligands And Subunit Peptides gi|197107210|pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of Eukaryotic Ribonucleotide Reductase gi|197107212|pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of Eukaryotic Ribonucleotide Reductase gi|290560304|pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed With Designed Adp Analog Compound gi|323714514|pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|323714515|pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|323714516|pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|323714517|pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|603306|gb|AAB64606.1| Rnr1p: Ribonucleotide reductase [Saccharomyces cerevisiae] gi|256271462|gb|EEU06516.1| Rnr1p [Saccharomyces cerevisiae JAY291] gi|285811701|tpg|DAA07729.1| TPA: Rnr1p [Saccharomyces cerevisiae S288c] Length = 888 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 284/769 (36%), Positives = 429/769 (55%), Gaps = 52/769 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + C GL + + + V +Y+G++ +L+ + + P+YA + AR Sbjct: 22 ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280 + L +K+ K ++ LY RY+ G A ++ + + +++V Sbjct: 82 AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126 Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ ++ E Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEA- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + +D + GI+ L+E A+++K Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WTLFSP L D Y Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE Y YE++ RG + I A LW +L ETG P++ +KD CN +S Q+ Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628 ++GV+ SSNLC EI S+ +ETAVCNL S+ L A ++ +++ KL + Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ S EA + + E Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I ++ AS ELAQ+ G Y +F+GS QG+ D + D+ WD Sbjct: 538 TIYHASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+K + G+RNS MA PTA+ + I G ++ +P N+Y + +SG+F VVN +L+ Sbjct: 588 LRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L +WDE M L +GSI + +P +LK ++ T +EI +I A+ R +ID Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 Q+ SLNL+L P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 756 >gi|224418360|ref|ZP_03656366.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter canadensis MIT 98-5491] gi|253827680|ref|ZP_04870565.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter canadensis MIT 98-5491] gi|313141891|ref|ZP_07804084.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT 98-5491] gi|253511086|gb|EES89745.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter canadensis MIT 98-5491] gi|313130922|gb|EFR48539.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT 98-5491] Length = 790 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/820 (36%), Positives = 436/820 (53%), Gaps = 106/820 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L ++ DG + + +++ ++ GL+ VS + + + D ++ +++ LI Sbjct: 2 LTVIKRDGRIEPLDVTKIQKYTRDSVVGLEGVSQSELEVDAKLHFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L V K K Y+E G Sbjct: 62 TAVDKIDIDCPNWTFVAARLFLYDLYHRVNGFNGYKSLK---------------EYLEIG 106 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 K + + M + F+L L + +RD F YLG++ LYDRY L G IE+PQ F Sbjct: 107 EKENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGQPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + A +FY+LLS F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAIAMFLAQNEKDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+KY GG+G D++ +RGLG+ I G + GVIPFLK+ ND A+AV+Q Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH D+ +F+D++KN+G++RRR HD+ A WIPDLFMKRV ++ W L Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRAHDLFPALWIPDLFMKRVAEDGLWNL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F +DL +LYG+ FE Y+ YE D + I A LW+++LT FE G P++ Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYENNPDIPK----ETIKAKDLWKRILTSYFEVGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------------C 600 FKD N +P H G++ SSNLCTEI N+ + + C Sbjct: 403 CFKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIEDYEEYQEVKTDC 462 Query: 601 NL----------GSINLLAHFANNQFDYD------KLAS--------------TIRTAVR 630 + SIN F + D LAS + A+R Sbjct: 463 GIIKSSNKITSTDSINGKKVFIAQRESIDGKTAVCNLASINLSKINTKEDIERVVPVAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S + +E DE ME I Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIQWGSQKHLEKIDEIMEMI 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AISAS +LAQE+G Y+ F S W +G+FPID A+ + WD L+ Sbjct: 583 SYNAISASCKLAQEKGVYNDFANSSWSKGIFPIDKANSEAKALVDRGGLFGFVYDWDSLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + VKT G+RN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L E Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE- 701 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 W+ + +A+EID +I++A+ RQKWIDQ Sbjct: 702 ----NWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731 Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 QS N++ LD+ SG+ L+ IY AW +GLK+TYYLRS+S Sbjct: 732 QSTNIFISLDKASGRYLNDIYSLAWRLGLKSTYYLRSQSV 771 >gi|301112881|ref|XP_002998211.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora infestans T30-4] gi|262112505|gb|EEY70557.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora infestans T30-4] Length = 793 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 281/819 (34%), Positives = 450/819 (54%), Gaps = 38/819 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSE-TYKNMYDGLSESDLETAL 202 + ++ DG ++ + + C GL D I +S+ +Y G++ S+L+ Sbjct: 1 MYVVKRDGRREDVKFDKITARITKLCYGLNPDYVDAIKISQKVVAGVYPGVTTSELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+++K+ AR + L +K K ++ + + + Sbjct: 61 AETAAYQSTQHPDFSKLAARIAVSNL--------HKNTNKVFSDNIEVFHKN---AHEKT 109 Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G A L+ + + + + + L + + ++RDF ++Y G + L Y +NG +E PQ Sbjct: 110 GAAAPLIADDVYEIVMQHKDELNSAIIHDRDFEYDYFGFKTLERGYLFRVNGKVVERPQQ 169 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 +RVA+G+ + A+E Y L+S F +TPTLFN+GT PQLSSCFL + DD Sbjct: 170 MILRVALGIHKSDITS---ALETYELMSQKFFTHATPTLFNAGTPRPQLSSCFLLAMQDD 226 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A ++K++GG+G +R ++I GTNG S G+IP L+V NDTA V Sbjct: 227 SIEGIYDTLKQCACISKWAGGIGISMHNIRATNSYIRGTNGSSNGIIPMLRVFNDTARYV 286 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKG+ YLE WH DV EFLDLRKN G++ R D+ A W+PDLFMKRV N Sbjct: 287 DQGGGKRKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANG 346 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P+E L++ +G EFE YE YE + + + I+A LW +L ETG Sbjct: 347 KWSLFCPNEAPGLYECWGDEFETLYEKYETEG-----RARKTINAQQLWFAILDAQIETG 401 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P++ +KD N +S QQ++G + SSNLC E+ +S +E AVCNL S+ L + FD Sbjct: 402 VPFMLYKDAANRKSNQQNLGTIRSSNLCCEVMEYTSPDEVAVCNLASVALPKFVEDAVFD 461 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y KL ++ R L+ VID+N + + +A+KSN HR IG+G+ G A L++ P+ SP Sbjct: 462 YRKLYEVVKVITRNLNKVIDVNYYPVAEARKSNMRHRPIGIGVQGLADAFILMNYPFESP 521 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A E+ E I F A+ S+E+A E G Y +F+GS +G+F D G+ + Sbjct: 522 QAQELNKNIFETIYFAAMETSMEIAVELGPYETFQGSPASKGIFQFDMWGVTPQ------ 575 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W LK V G+RNS +A PTA+ A I G ++SI+P N+Y + ++G Sbjct: 576 ---SGLWNWAALKDDVIKHGLRNSLLVAPMPTASTAQILGNNESIEPYTSNMYNRRVLAG 632 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FT+VN L+ EL + +W + + + GS+ I+ IP+D+K+ + T +EI ++ Sbjct: 633 EFTIVNKHLMKELIELGIWTPEVRNQILNDGGSVQKIKTIPEDVKEKYKTVWEIKQKAVL 692 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + ++ R +I Q+QSLN+++ +P+ KL ++ AW GLKT YY+R R + T+ Sbjct: 693 DLSADRGAYICQSQSLNIHIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPKADAIQFTV 752 Query: 917 --KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +G+D + T + + + + + EC VC Sbjct: 753 DKQGIDLQRAKEEATKTAPTPAAETVTRAGDDEDECLVC 791 >gi|154340341|ref|XP_001566127.1| ribonucleoside-diphosphate reductase large chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063446|emb|CAM39626.1| putative ribonucleoside-diphosphate reductase large chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 799 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 276/678 (40%), Positives = 393/678 (57%), Gaps = 33/678 (4%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335 L + + Y RD FE+ G + L Y L I R EM PQ FMRVA+G+ ++ Sbjct: 136 LQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGRDLNN 195 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 + E YNL+S F +TPTLFN+GT PQ+SSCFL DD + GI+ L+E A+++ Sbjct: 196 VR---ETYNLMSMGFFTHATPTLFNAGTPKPQMSSCFLVASKDDSIDGIYDTLKECAVIS 252 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +R G++I GTNG S G++P L+V N+TA V+QGG KRKGA YLE Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH DV FL L++NTG D +R D+ A WIPDLFMKRV WTL P+ L D Sbjct: 313 PWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMKRVKSEGRWTLMDPNTCPGLSDC 372 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G+ FE YE YE + RG + I A +W +L ETG P+I +KD CN +S Q Sbjct: 373 HGEAFERLYERYEAEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKSNQ 427 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631 +++G + SNLCTEI +S EETAVCNL SI L +F++ L + + R Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPEETAVCNLASIALPRFVDVEKREFNHQLLYAVTKQITRN 487 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ VID N + +E A++SN +R IGLG+ G L+ +P+ S EA + E E I Sbjct: 488 LNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADTFILMRLPFVSAEAQRVNAEIFETIY 547 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A+ +S+ELA+E G Y +FKGS +G+ D + A + R W LK+ Sbjct: 548 FAAVESSMELAKEEGPYETFKGSPASEGILQFDMW--------KNARPNSGRWDWASLKE 599 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +V +G+RNS ++ PTA+ + I G ++ +P N+YV+ +SG+F VVN +LV +L Sbjct: 600 KVMQVGIRNSLLVSPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 R LW+E M +++ ++GSI NI+ IPDDLK+++ T +EI LI+ A R ++IDQ+Q Sbjct: 660 ARGLWNEQMRNEIISYNGSILNIDGIPDDLKELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK----LNAV 926 SLNL+L P+ ++ + W GLKT YYLR+++A K T VD K + Sbjct: 720 SLNLFLQSPTSGQITSMLFYGWEAGLKTGVYYLRTKAAADAIKFT---VDAKRLKEIQER 776 Query: 927 PVTDPNSSTHSLGIPSSC 944 + S+H + P C Sbjct: 777 ESSQQTMSSHRVSQPEEC 794 >gi|323305248|gb|EGA58995.1| Rnr1p [Saccharomyces cerevisiae FostersB] Length = 888 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 284/769 (36%), Positives = 428/769 (55%), Gaps = 52/769 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + C GL + + + V +Y+G++ +L+ + + P+YA + AR Sbjct: 22 ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280 + L +K+ K ++ LY RY+ G A ++ + + +++V Sbjct: 82 AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126 Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ + E Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGXDIEA- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + +D + GI+ L+E A+++K Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WTLFSP L D Y Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE Y YE++ RG + I A LW +L ETG P++ +KD CN +S Q+ Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628 ++GV+ SSNLC EI S+ +ETAVCNL S+ L A ++ +++ KL + Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ S EA + + E Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I ++ AS ELAQ+ G Y +F+GS QG+ D + D+ WD Sbjct: 538 TIYXASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+K + G+RNS MA PTA+ + I G ++ +P N+Y + +SG+F VVN +L+ Sbjct: 588 LRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L +WDE M L +GSI + +P +LK ++ T +EI +I A+ R +ID Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 Q+ SLNL+L P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 756 >gi|170088813|ref|XP_001875629.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82] gi|164648889|gb|EDR13131.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82] Length = 881 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/771 (36%), Positives = 423/771 (54%), Gaps = 50/771 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + V + +Y G++ +L+ ++ L K P+YA + AR Sbjct: 23 IQKLCYGLNENFVDPIEFTQKVVAGVYHGVTTVELDNLAAETAAYLTTKHPDYAVLAARI 82 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+ +Y+ + E + + E +A Sbjct: 83 AVSNLHKETKKNFSQVIKDLYEYVNPKNRRPAGMISQEIY-EIVRENAEA---------- 131 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + Y RDF+F + G + L Y L +NG E PQ MRVA+G+ ++ + Sbjct: 132 ----LDSAIIYNRDFSFNFFGFKTLERSYLLRLNGRVAERPQHMIMRVAVGIHGRDID-- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 R VE YNL+S +F ++PTLFN+GT HPQLSSCFL + DD + GI+ L+ AM++K Sbjct: 186 -RVVETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGIYDTLKNCAMISK 244 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G +R G++I GTNG S G++P L+ + TA V+QGG KR GA Y+E Sbjct: 245 TAGGIGLSIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAFAIYIEP 304 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A WIPDLFMKRV N W+LF P+E + L +++ Sbjct: 305 WHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLFCPNEAAGLGEVH 364 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 EFE YE YE++ + + I A LW +L ETG P++ +KD N +S Q+ Sbjct: 365 SAEFEALYEKYEKEG-----RARKSIPAQKLWYAILEAQIETGGPFMVYKDHANSKSNQK 419 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 ++G + SSNLCTEI SS EETAVCNL S+ L +N ++D+ KL + L+ Sbjct: 420 NLGTIKSSNLCTEIIEYSSPEETAVCNLASLALPTFISNGKYDFQKLHDVTKVVAYNLNR 479 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + I +A+ SN HR IG+G+ G L +P+ SP A E+ + E I A Sbjct: 480 IIDVNYYPIPEARLSNMRHRPIGVGVQGLADTFMALRMPFDSPAAKELNIQIFETIYHGA 539 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA+ G Y ++ GS G D G+ T W LK+++ Sbjct: 540 LEASSELAERDGPYETWMGSPAQLGQLQYDLWGVTP----------TGLWDWTSLKEKIA 589 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VV +L+ EL Sbjct: 590 RTGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDLG 649 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LWD+ M + + H+GS+ NI IPDD+K I+ T +EI +++ A+ R +I Q+QSLN Sbjct: 650 LWDDNMKNMIIAHNGSVQNIPTIPDDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLN 709 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS-----VEKSTLKGV 919 ++L P+ +L ++ W GLKT YYLR+R A S V++S LK V Sbjct: 710 VHLQAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAASAIQFTVDQSLLKEV 760 >gi|254580061|ref|XP_002496016.1| ZYRO0C08514p [Zygosaccharomyces rouxii] gi|238938907|emb|CAR27083.1| ZYRO0C08514p [Zygosaccharomyces rouxii] Length = 921 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 281/767 (36%), Positives = 429/767 (55%), Gaps = 47/767 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + +Y+G++ +L+ + + P+YA + AR Sbjct: 22 ISKLCYGLDPSHIDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTVHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L ++ T Q + Y GV + ++ + + F++V Sbjct: 82 AVSNLHKQT-----------TKQFSQVISDLYHYVNPANGVHSPMISDEI--FNIVMTNK 128 Query: 284 D-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 D + Y+RDF F Y G + L Y L ING E PQ MRV++G+ E K Sbjct: 129 DELNSAIVYDRDFQFNYFGFKTLERSYLLRINGLTAERPQHLIMRVSLGI---HGEDIKS 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNL+S +F+ ++PTLFN+GT HPQ++SCFL + DD + GI+ +L+E AM++K + Sbjct: 186 AIETYNLMSLRYFIHASPTLFNAGTPHPQMASCFLVAMKDDSIEGIYDSLKECAMISKTA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGLHIHNIRSTGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WTLFSP E L D+YG+ Sbjct: 306 SDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNEEWTLFSPSEAPGLADVYGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YE++ RG + I A LW +L ETG P++ +KD CN +S Q+++ Sbjct: 366 EFEKLYERYEQEG-RGR----KTIRAQKLWYAILEAQTETGTPFMLYKDACNEKSNQKNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLL------AHFANNQFDYDKLASTIRTAVR 630 GV+ SSNLC EI S +ETA CNL SI L A + + KL + R Sbjct: 421 GVIKSSNLCCEIVEYSDKDETAACNLASIALPSCVEVSADGKEQWYSFAKLHEVAKAITR 480 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ VID N + + +AK+SN HR I LG+ G +L +P+ SPEA + + E I Sbjct: 481 NLNKVIDRNYYPVPEAKRSNMRHRPIALGVNGLADTFMMLRLPFESPEAKILNQQIFETI 540 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+ S ELA+ G YS+++GS QG+ D L E N + W+ L+ Sbjct: 541 YHGALEQSCELAKIHGTYSTYEGSPISQGLLQFD----LWE------KNPSELWDWEPLR 590 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + +K G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L Sbjct: 591 QGIKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLKDL 650 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +WDE+M + +GSI NI IP ++K ++ T +EI +++ A+ R +IDQ+ Sbjct: 651 VDLGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWEISQRHVLDMAADRAVFIDQS 710 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 SLN+++ P+ KL ++ W GLKT YYLR+++A++ + T+ Sbjct: 711 HSLNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757 >gi|145340510|ref|XP_001415366.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575589|gb|ABO93658.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 817 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 294/805 (36%), Positives = 438/805 (54%), Gaps = 61/805 (7%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 IV + ++ G++ +L+ ++ ++ K P+YA++ AR ++ ++K Sbjct: 41 IVAQKVCMGVFAGVTTKELDELAAETAASMTSKHPDYAQLAARI--------AVSNLHKT 92 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ M +Y R G + LL + + + + L ++ Y+RDF ++Y Sbjct: 93 TKKSFSETMTQMYEHVNER---NGKWSPLLADDVYEIIKANAERLDAEIVYDRDFEYDYF 149 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I+G +E PQ MRV++G+ ++ EK AV+ Y++LS ++P Sbjct: 150 GYKTLERSYLLRIDGKVVERPQHLLMRVSIGIHKEDIEK---AVDTYHMLSERWMTHASP 206 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + +D + GI+ L+E A ++K +GG+G +R ++I Sbjct: 207 TLFNAGTPRPQLSSCFLIAMKEDSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIR 266 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G+IP L+V NDTA V+QGG KRKGA Y+E WH D+ ++LDLRKN G + Sbjct: 267 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYIEPWHADIFDWLDLRKNHGKEEA 326 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ W DLFMKRV N WTL P+E L D +G+EFE Y+ YE E Sbjct: 327 RARDLFYGLWTNDLFMKRVEANGDWTLMCPNECPGLADCWGEEFETLYQKYE-----AEG 381 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + I A LW +L ETG+P++ FKD CN +S QQ++G + SSNLCTEI +S Sbjct: 382 KGKKTIKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSP 441 Query: 595 EETAVCNLGSINLLAHFANNQ-----------------------FDYDKLASTIRTAVRV 631 EETAVCNL SI L N FD+DKL R R Sbjct: 442 EETAVCNLASIALPRFVIENNPSSPTGRTEVKKLVGSLKAKERYFDHDKLFEITRKVTRN 501 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ +ID+N + +E AK+SN HR IGLG+ G LL + + SPEA ++ E E I Sbjct: 502 LNRIIDVNYYPVETAKRSNMRHRPIGLGVQGLADVFILLGLAFDSPEAQKLNAEIFETIY 561 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A++ S LA G Y++++GS +G+ D GL M R W L+ Sbjct: 562 FAALTESNALAVVEGPYTTYEGSPVSKGILQPDMWGL-------TQMPGGDRHDWAGLRA 614 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 + G+RNS +A PTA+ + I G ++ +P N+Y + +SG+FTVVN L+++L Sbjct: 615 AIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLT 674 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + LWD + + L ++GS+ ++E IP++LK I+ T +EI L++ A+ R +IDQ+Q Sbjct: 675 ELGLWDPELKNSLIANNGSVADLE-IPENLKAIYKTVWEIKQRILVDMAADRGAFIDQSQ 733 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 S N+++ +P+ KL ++ AW GLKT YYLRSR+A K T VD K V Sbjct: 734 SFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFT---VDVKQKQVTKMS 790 Query: 931 PNSSTHSLGIPSSC--TSDTECEVC 953 L C T+ +C +C Sbjct: 791 EEEKEAYLAAKLQCSLTNKDDCVMC 815 >gi|221125331|ref|XP_002156185.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain isoform 1 [Hydra magnipapillata] Length = 821 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/775 (36%), Positives = 431/775 (55%), Gaps = 52/775 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + +S + + + MY G++ +L+T + ++ K P+YA + AR Sbjct: 39 IKKLCFGLDMKYISPYAITWKVIRGMYPGITTVELDTLAAEVAASMTTKHPDYALLAARI 98 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHESMMDFDLVYL 281 + L +E KK + PE C + E V +++ ++ D + Sbjct: 99 AISNLHKET----KKKFSDTIADLYNYISPEINMNCPMVSEEV-YQIVQKNKERLDGAII 153 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 ++ RDF + Y G + L Y L ING E PQ MRV++G+ E A+E Sbjct: 154 SS-----RDFEYHYFGFKTLERSYLLKINGKTAERPQHMLMRVSVGI---HGEDLDAAIE 205 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGL 400 YNL+S F ++PTLFNSGT PQ+SSCFL + D + GIF +++ A+++K++GG+ Sbjct: 206 TYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMQSDSIEGIFDTVKQCAIISKWAGGI 265 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G +R G++I GTNG S G+IP L+V N+TA V+QGG KR G++ YLE WH D+ Sbjct: 266 GLHIHCIRSSGSYIAGTNGHSNGIIPMLRVFNNTARYVDQGGNKRPGSIAIYLEPWHADI 325 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLDL+KNTG + +R D+ W+PDLFM+RV + W+L P E L D YG+EFE Sbjct: 326 IDFLDLKKNTGKEEQRARDLFFGLWVPDLFMRRVEEKGMWSLMCPHECPGLADCYGEEFE 385 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y+ YE + + ++I A LW +L ETG P++ +KD CN +S Q+++G + Sbjct: 386 ELYQKYESEG-----RYRKQIPAQKLWFAILESQTETGTPYMLYKDSCNRKSNQKNLGTL 440 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----------------FDYDKLA 622 SNLCTEI +SS+E AVCNL SI++ + N +D+ KL Sbjct: 441 KCSNLCTEILEYTSSDEIAVCNLASISVNSFVTVNSETVTLPSGETKLVKTGVYDFKKLK 500 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + R L+ VID N + + +A+ SN HR IG+G+ G A L+ P+ S EA + Sbjct: 501 YVTKVITRNLNKVIDRNFYPVPEARNSNMRHRPIGIGVQGLADAFILMRFPFESDEASLL 560 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I + A+ AS ELA++ G Y S++GS +G+ D + T+ Sbjct: 561 NKQIFETIYYGALEASCELAEKDGTYESYQGSPISKGILQYDMWNVTP----------TN 610 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W ELK ++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F VV Sbjct: 611 LWNWAELKAKIALHGVRNSLLVAPMPTASTAQILGNNESIEPYTNNIYSRRVLSGEFQVV 670 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N L+ +L +LWD+ M + L H+GS+ NI+ IP D+K ++ TA+EI LI A+ Sbjct: 671 NKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEIPADIKVLYKTAWEIKQKSLINMAAD 730 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 R +IDQ+QS N++L EPS L I+ W GLKT YYLR++ A + + T+ Sbjct: 731 RGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTV 785 >gi|268678696|ref|YP_003303127.1| ribonucleoside-diphosphate reductase, subunit alpha [Sulfurospirillum deleyianum DSM 6946] gi|268616727|gb|ACZ11092.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurospirillum deleyianum DSM 6946] Length = 788 Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust. Identities = 297/818 (36%), Positives = 431/818 (52%), Gaps = 104/818 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G + + +++ A GL +VS + + D ++ +++ LI Sbjct: 2 LTVQKRNGRIEPLDISKIQKYTSSAIKGLDNVSQSELEVDAKIQFRDKITTEEIQKTLIK 61 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ PN+ V AR L L Y K T + + EYF R +EG Sbjct: 62 TAVDKIDIDRPNWTFVAARLFLYDL--------YHKVSGFTGYGS---FKEYFERCEKEG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322 A L E +DL L ++ ERD F YLG++ L+DRY + + G IE+PQ FM Sbjct: 111 RIALGLKEK---YDLADLEAYIQPERDLQFNYLGIKTLHDRYLIKNKEGKPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 ++M LA E + A +FY+++S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 AISMFLAQNELNSQDWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E ++L+K+ GG+G DW VR +G I G + GVIPFLK+ ND AVAV+Q G Sbjct: 228 IFDSYKEMSLLSKFGGGIGWDWNLVRSMGGMIDGHKNAAGGVIPFLKITNDIAVAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WH+D+ +FLDL+KN+G++RRR H++ A WI DLFMKRV NA WTLF Sbjct: 288 TRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHELFPALWINDLFMKRVESNAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + DL ++YG+EFE Y YE D K + I A LW+K+LT FE+G P++ Sbjct: 348 DPAQTPDLCEVYGEEFERRYSAYEH--DESVTKEY--ILAKELWKKILTSYFESGSPFLC 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------------------------ 592 FKD N +P H G++ SSNLCTEI N+ Sbjct: 404 FKDSANKVNPNDHAGIIRSSNLCTEIFQNTQPNHYKIKIVFNDQTFITYEERDLVKVDSG 463 Query: 593 -SSEETAVCNLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631 + E + L SI NL + + + + + A+R+ Sbjct: 464 ITKEAKKITALDSIDGKDIFIVEKEMIEGKTAVCNLASVNLSKIHTKEDIERVLPIAIRM 523 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RA+GLG+MG L I + S E DE ME IS Sbjct: 524 LDNVIDLNFYPHAKVKHTNLKSRAVGLGVMGEAQMLAEKGIEWGSYEHFSKIDEVMEAIS 583 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 ++AI AS LA E+G Y F GS W +G+FPID+ A+ + W+ L++ Sbjct: 584 YNAILASSNLAIEKGVYPEFSGSKWSKGIFPIDTANEEAKKLVDRGGLFGYMYDWESLRE 643 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 644 KVKNNGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGMIPVVAPNL----- 698 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + W + A+E+D L+++ + RQKWIDQ Q Sbjct: 699 NPNTW--------------------------TFYTPAYELDQRILVKAGAIRQKWIDQGQ 732 Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 SLN++ LD+ SGK L+ IY AW +G+K+TYYLRS+S Sbjct: 733 SLNIFITLDKASGKYLNDIYMLAWKLGIKSTYYLRSQS 770 >gi|313233631|emb|CBY09802.1| unnamed protein product [Oikopleura dioica] gi|313245650|emb|CBY40318.1| unnamed protein product [Oikopleura dioica] Length = 832 Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust. Identities = 296/805 (36%), Positives = 443/805 (55%), Gaps = 72/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK---NMYDGLSESDLETA 201 LK+ DG L ++ +++ C L D++ LS T K +YDG++ +L+ Sbjct: 4 LKVKKRDGRLEEVFFDKITSRIKKLCYNL-DMNILSPLSVTRKVIDGIYDGVTTVELDNL 62 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRY 259 ++ + P+YA + AR + L H E + L+ E R Sbjct: 63 AAETAAQMSVNHPDYAILAARISVSNL----------------HKETKKLFTEVIEDLRN 106 Query: 260 IE--EGVKARLLHESMMDFDLVYLANDLK------YERDFAFEYLGLQILYDRYFLHING 311 +E G K L+ E + +AN K ++RD+ + Y G + L Y + I+G Sbjct: 107 VEGYNGKKKPLISEKTYK---IVVANKDKLNSAVIHDRDYEYNYFGFKTLERSYLMKIDG 163 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 IE PQ MRV++G+ ++ + A+E YN +S +F ++PTLFNSGT PQ+SSC Sbjct: 164 KTIERPQHMLMRVSVGIHGEDIDA---ALETYNFMSLKYFTHASPTLFNSGTPRPQMSSC 220 Query: 372 FLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 FL + DD + GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V Sbjct: 221 FLVAMQDDSIEGIYDTLKTCALISKNAGGIGVNVHNIRARGSYIGGTNGHSNGLIPMLRV 280 Query: 431 ANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 N+TA V+QGG KR GA YLE WH D+ EFLD +KNTG + R D+ A WIPDLF Sbjct: 281 YNNTARYVDQGGNKRPGAFAVYLEPWHADIFEFLDAKKNTGSEETRARDLFYALWIPDLF 340 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 MKRV N WTLF PDE LH+ +G+EFE +E YE++ RG+ I A ALW K+ Sbjct: 341 MKRVESNGDWTLFCPDEAPGLHECWGEEFEALFEKYEKEG-RGK----ETIKAQALWYKI 395 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 + E G P++ +KD CN +S QQ++G + SNLCTEI SS +E AVCNL S++L A Sbjct: 396 IEAQIEVGVPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSKDEVAVCNLASLSLPA 455 Query: 610 HFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 N +D+ L + R L+ VIDIN + +E+A+ SN HR IG+G+ G Sbjct: 456 FIRKNDQGFSVYDFQDLYDKTKIVTRNLNKVIDINFYPVEQARFSNMQHRPIGIGVQGLA 515 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----------- 713 +L + + S EA + + E I F A+ AS ELA++ G Y SF+ Sbjct: 516 DTFCMLKLAFESDEAKLLNKQIFETIYFAAVEASCELAEKEGPYLSFRAHTHPITGQKNP 575 Query: 714 -SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 S QG F D G+ T WD L+++V G+RNS ++ PTA+ Sbjct: 576 DSPMAQGKFQFDLWGVTP----------TDLWDWDSLREKVTRHGVRNSLLVSPMPTAST 625 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A I G ++SI+P N+Y + +SG+F VVN L+ EL + + WD+ + + +GSI Sbjct: 626 AQILGNNESIEPFTNNIYTRRVLSGEFQVVNPHLLRELTEINYWDDEIRQQIVQDNGSIQ 685 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 N++ IP D+K+ + T +EI +++ A+ R +IDQ+QSLN+++ +P L ++ Sbjct: 686 NLD-IPADIKERYRTVWEIKQKNVLQMAADRGPFIDQSQSLNIHVAQPKYGTLTSMHFTG 744 Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL 916 W MGLKT YYLR++ A + K T+ Sbjct: 745 WKMGLKTGMYYLRTKPAAAAIKFTV 769 >gi|255949828|ref|XP_002565681.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592698|emb|CAP99060.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255] Length = 863 Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust. Identities = 277/761 (36%), Positives = 426/761 (55%), Gaps = 51/761 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + + + + + +Y G+ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHIDAAAITQKVISGVYQGVGTIELDNLAAETAAYMTVTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L ++ V++ +Y + + E++ + + H ++ Sbjct: 82 AVSNLHKQTKKQFSMVISDLYHYVNPKNNKPAPMISKEHY--------EIVMKHAEELNS 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 +VY +RDF + + G + L Y L ING+ E PQ MRVA+G+ ++ EK Sbjct: 134 AIVY-------DRDFNYNFFGFKTLERSYLLRINGTVAERPQHLLMRVAVGIHGEDIEK- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAK 395 A+E Y+L+S +F ++PTLFN+ T PQL+SCFL + D + GI+ L+ AM++K Sbjct: 186 --AIETYHLMSQKYFTHASPTLFNAATPQPQLASCFLVDMSADSIEGIYDTLKTCAMISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 244 TAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E L D+Y Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ Y YE Q RG + I A LW +L ETG+P++ +KD CN +S Q+ Sbjct: 364 GEEFDALYAKYE-QEGRGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQK 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632 ++G + SSNLCTEI S+ +E AVCNL S+ L A ++D+ KL ++ V L Sbjct: 419 NLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDSARGEYDFGKLHEVVQVLVHNL 478 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +IDIN + + +AKKSN HR I LG+ G A L +P+ SPEA ++ + E I Sbjct: 479 NKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSPEARQLNIQIFETIYH 538 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELK 750 A++AS ++A++ G Y ++ GS QG+ D +RT WD LK Sbjct: 539 GALTASSDIAKKLGPYETYPGSPVSQGILQYD------------MWDRTPTDLWDWASLK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 AKIAETGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW + M + + GS+ NI IP D+K ++ T +EI +++ A+ R +IDQ+ Sbjct: 647 VDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQMAADRGAYIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 QSLN++L EP+ KL ++ W MGLKT YYLR+ +A++ Sbjct: 707 QSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASA 747 >gi|157871642|ref|XP_001684370.1| ribonucleoside-diphosphate reductase large chain [Leishmania major strain Friedlin] gi|68127439|emb|CAJ05210.1| putative ribonucleoside-diphosphate reductase large chain [Leishmania major strain Friedlin] Length = 799 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 296/800 (37%), Positives = 436/800 (54%), Gaps = 63/800 (7%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 ++M+ E GL D + YD L E +TA +S + K P+Y ++ Sbjct: 41 VDMLTENVTRGLTD-----------QIRYDKLDELVAQTA-AYS----VTKHPDYGRMGG 84 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDL 278 R T+++K+ ++ + L+ ++ A L+ + +M Sbjct: 85 RL--------CTTSLHKQTNESLLETFRLLHSHV---TVQTNRPAPLIADDVWEVMKQHH 133 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKET 333 L + Y RD FE+ G + L Y L I R EM PQ FMRVA+G+ + Sbjct: 134 AELQGMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGADL 193 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAM 392 K E Y+L+S F +TPTLFN+GT PQ+SSCFL +D + GI+ L+E A+ Sbjct: 194 ---KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAV 250 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAY 451 ++K +GG+G +R G++I GTNG S G++P L+V N+TA V+QGG KRKGA Y Sbjct: 251 ISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVY 310 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 LE WH DV FL L++NTG D +R D+ A WIPDLFM+RV WTL P+ L Sbjct: 311 LEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLS 370 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 D YG+EFE YE YE + RG + I A +W +L ETG P+I +KD CN +S Sbjct: 371 DCYGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKS 425 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAV 629 Q+++G + SNLCTEI +SS+ETAVCNL SI L + ++ L + + Sbjct: 426 NQKNLGTIKCSNLCTEIVEYTSSQETAVCNLASIALPRFVEVEKRELNHQLLYTVTKQIT 485 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R L+ VID N + +E A++SN +R IGLG+ G A L+ +P+ S EA + E E Sbjct: 486 RNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFET 545 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I F A+ +S+ELA+E G Y +F GS +G+ D + A + R W L Sbjct: 546 IYFAAVESSMELAKEEGPYETFAGSPASEGILQFDMW--------KNARPNSGRWDWASL 597 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K++V +GMRNS +A PTA+ + I G ++ +P N+YV+ +SG+F VVN +LV + Sbjct: 598 KEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMD 657 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L R LW+E+M +++ ++GSI I +PDDL++++ T +EI LI+ A R ++IDQ Sbjct: 658 LIARGLWNESMRNEIISYNGSILAINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQ 717 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK----LN 924 +QSLNL+L P+ ++ + +W GLKT YYLR+++A K T VD K + Sbjct: 718 SQSLNLFLQSPTSGQITSMLFYSWEAGLKTGVYYLRTKAAADAIKFT---VDAKRMKEIQ 774 Query: 925 AVPVTDPNSSTHSLGIPSSC 944 + S+H P C Sbjct: 775 ERETSQQTMSSHRASQPEEC 794 >gi|163955126|ref|YP_001648230.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5] gi|163638575|gb|ABY27934.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5] Length = 747 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 274/739 (37%), Positives = 417/739 (56%), Gaps = 45/739 (6%) Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 ++ S V + ++YDG++ +++T +I +P+Y E+L Sbjct: 31 KNCDSSKVAQQVASSLYDGIAAQEIDTLSAEVCVGMITSDPDY--------------EIL 76 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293 T + +Q + P F +++ KA ++ E + V + +D+ +RD+ F Sbjct: 77 AT------RIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AVRVRDDIVTKRDYDF 129 Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 Y GL+ L Y ++G +E PQ FMRV++G+ E +E Y+ +S F+ Sbjct: 130 GYFGLKTLEKSYLQRLDGILMETPQYMFMRVSIGI---HGEDIPAVLETYDKMSQGMFIH 186 Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTLFN+GT PQ+SSCFL D + GI+G+L E A ++K++GG+G VR + Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKGDSIDGIYGSLTECAQISKWAGGIGMHIHDVRANKS 246 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I GTNG+S G+IP L+V N TA VNQ G+RKG++ YLE WH D+ +FL+LR N GD+ Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMDFLELRLNQGDE 306 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R D+ +A WIPDLFMKRV + W+LF PD+ L + G+EFE Y YE + Sbjct: 307 EARCRDLFSALWIPDLFMKRVEEGGQWSLFCPDKAPGLSEAVGEEFEALYTKYEEEG--- 363 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 + + A +W+ +L ETG P++ +KD CN +S Q+++G + SSNLCTEI + Sbjct: 364 --RANATVPAADVWKAILKSQTETGTPYMLYKDACNTKSNQKNLGTIKSSNLCTEIIEYT 421 Query: 593 SSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +ET+VCNL SI L + N + FDY+KL + + L+ VID N + +E A+KS Sbjct: 422 DKDETSVCNLASI-ALPKYVNEETRSFDYEKLHEITKVVTKNLNRVIDRNFYPVETARKS 480 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IGLG+ G L + + S EA + E + A+ AS ELA+ G Y Sbjct: 481 NMRHRPIGLGVQGLADVFILCRLAFDSDEAKAMNARIFETMYHAALEASSELAEVEGPYE 540 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F+GS QG+ D + E +N WD LK+R++ G+RNS MA PT Sbjct: 541 TFEGSPASQGILQFDMW------QGETKLN----YDWDALKERIREKGLRNSLLMAPMPT 590 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++ +P N+Y++ ++G+F VVN LV +LK+ LW + M + G Sbjct: 591 ASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVEDLKKIGLWSKDMKDLMVKAGG 650 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI NI IPDD+K ++ T +EI +I+ A+ R ++IDQ+QS+NL+++ P+ KL ++ Sbjct: 651 SIQNIVDIPDDIKNLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLFMESPTLSKLSSMH 710 Query: 890 RQAWLMGLKT-TYYLRSRS 907 AW GLKT YYLRS++ Sbjct: 711 MYAWKQGLKTGMYYLRSKA 729 >gi|237752016|ref|ZP_04582496.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter winghamensis ATCC BAA-430] gi|229376583|gb|EEO26674.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter winghamensis ATCC BAA-430] Length = 790 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 298/820 (36%), Positives = 435/820 (53%), Gaps = 108/820 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L ++ +G + + +++ +++ GL+ VS + + D ++ +++ LI Sbjct: 2 LTVVKRNGRIEPLDVTKIQKHTKDSVLGLEGVSQSELEVDAKLQFRDKITTQEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L V YK Y E+ Sbjct: 62 TAVDKIDIDCPNWTYVAARLFLYDLYHRVNGFNGYKS----------------LAEYFEK 105 Query: 263 GVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 G + R++ F+L L + ERD F YLG++ LYDRY L G+ IE+PQ Sbjct: 106 GERENRIIGGLKEKFNLDRLNKKIVPERDLQFNYLGVKTLYDRYLLKDKQGNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E + A +FY+LLS F M +TPTL N+ T QLSSC++ + PD + Sbjct: 166 FMGIAMFLAQNEKDPNYWAEQFYDLLSKFEVMVATPTLSNARTPRHQLSSCYVGSTPDSI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ +RGLG+ I G + GVIPFLK+ ND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH D+ +F+D++KN+G++RRRTHD+ A WIPDLFMKRV ++ W+ Sbjct: 286 LGTRKGAISVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVGEDGLWS 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF +DL +LYG+ FE Y YE+ E V + A LW+K+LT FE G P+ Sbjct: 346 LFDSLACADLTNLYGEAFEARYIQYEQD----ESIVRETVKAKDLWKKILTSYFEIGSPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSINLLAHFANNQFD 617 + FKD N +P H G++ SSNLCTEI N+ T + G+I + D Sbjct: 402 LCFKDNANRANPNAHAGIIRSSNLCTEIFQNTEPNTTFIRVEFEDGTIEDYPEYQPIITD 461 Query: 618 Y------DKLAST------------------------------------------IRTAV 629 Y +K+ ST + A+ Sbjct: 462 YGIEKLSNKITSTDSIGGKKVFIAQRESKDGKTAVCNLASINLSKIHTKEDIERVVPIAI 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S ++ D ME Sbjct: 522 RMLDNVIDLNFYPNRKVKVTNLDNRAIGLGVMGEAQMLAESRIEWGSDAHLQKIDAIMES 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 +S++AI +S ELAQE+G YS F GS W +G+FPID A+ + W+ L Sbjct: 582 VSYNAIKSSCELAQEKGVYSDFVGSEWSKGIFPIDKANNEAKALVDRGGLFAYDYDWNAL 641 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++ VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 642 REEVKTKGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL--- 698 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 D W+ + +A+EID L+++A+ RQKWIDQ Sbjct: 699 --SLDNWN--------------------------YYTSAYEIDQRLLVKAAAVRQKWIDQ 730 Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QS N++ L+ SGK L+ IY AW +GLK+TYYLRS+S Sbjct: 731 GQSTNIFMALNLASGKYLNEIYTLAWKLGLKSTYYLRSQS 770 >gi|254584212|ref|XP_002497674.1| ZYRO0F10956p [Zygosaccharomyces rouxii] gi|238940567|emb|CAR28741.1| ZYRO0F10956p [Zygosaccharomyces rouxii] Length = 875 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 273/665 (41%), Positives = 396/665 (59%), Gaps = 25/665 (3%) Query: 265 KARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAF 320 K ++ E + L Y L + + +ERDF F Y G + L Y + N +I E PQ Sbjct: 132 KKGVISEEFLQMALKYEKKLNDAIVHERDFNFTYFGWKTLCQSYLIKKNADQIHETPQFL 191 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 FMRVA+ + E +E Y L+S +F+ ++PTLFN+GT + LSSCFL + +D Sbjct: 192 FMRVALAIH-GPFEDIDSVIETYELMSRKYFIHASPTLFNAGTVNQYLSSCFLVGMKEDS 250 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GIF L++ A+++K SGG+G + +R GAH+ G+NG S G++P L+V N+TA V+ Sbjct: 251 IEGIFKTLEDTALISKASGGIGIHVSNIRASGAHVSGSNGTSNGIVPMLRVFNNTARYVD 310 Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG KR GA C YLE WH DV +FL LRKN G D R D+ A WIPDLFMKRV N Sbjct: 311 QGGNKRPGAYCIYLEPWHSDVFDFLQLRKNHGKDELRARDLFFALWIPDLFMKRVQCNGE 370 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LFSPDE L D+YGKEFE YE YE A +++ A LW ++L ETG Sbjct: 371 WSLFSPDEAPGLSDVYGKEFEELYEQYEATA-----LPMKRVKAQKLWSEILQAQVETGG 425 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQ 615 P++ +KD CN++S Q+++G + SSNLC EI SS +ETAVCNL S+ L + N Sbjct: 426 PFMLYKDSCNLKSNQKNLGTIKSSNLCCEIVEYSSKDETAVCNLASVALPTFVVQVTNKG 485 Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 FD+ KL + ++T R LD VID+ + I +A+ SN +R +G+ G +L IP Sbjct: 486 SIFDFVKLHAVVKTITRNLDRVIDVCKYPIPQAQYSNLRNRPEAIGVQGLADVFLMLRIP 545 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S EA + + E I A+ S+ELA+E GAY +F+GS QG+ D GL + Sbjct: 546 YESQEARILNTQIFETIYHAAVETSIELAEEYGAYETFQGSPASQGLLQFDLWGLNEDNY 605 Query: 734 DELAMNRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D L + W ELK R++ G+RNS + PTA+ + I G ++S +P N+Y + Sbjct: 606 DFLYRD------WGELKHRIQNGRGLRNSLLLGPMPTASTSQILGYTESFEPMTSNVYAR 659 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VN ++V+ Q +W+E + + + +GS+ NI+ +PD +KKI+ T +EI Sbjct: 660 RVLSGEFINVNQYMVDHFCQLGIWNEKLKNRIIADNGSVQNIQGLPDWIKKIYRTVWEIP 719 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 LI+ A R +IDQ+QSLNL++ P+ KL ++ AW GLKT YYLR+++A++ Sbjct: 720 QRPLIDMARDRSPFIDQSQSLNLFMKTPTMGKLTSMHFHAWRHGLKTGMYYLRTQAASAA 779 Query: 912 EKSTL 916 + T+ Sbjct: 780 IQFTV 784 >gi|91080433|ref|XP_968671.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum] gi|270005754|gb|EFA02202.1| hypothetical protein TcasGA2_TC007859 [Tribolium castaneum] Length = 808 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 278/774 (35%), Positives = 435/774 (56%), Gaps = 56/774 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + V + + +Y G++ +L+T ++ + P+YA + AR Sbjct: 29 IQKLCYGLNMEFVDPVSITLKVISGLYPGVTTVELDTLAAETAAMMTTNHPDYAILAARI 88 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+ ++K T + Q + E H +++ Sbjct: 89 AVSNLHKETKKQFSDVIDDLHKAVSSKTGRKTQMISDE---------------HHAIVMK 133 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L + + Y+RDF++ Y G + L Y L ING +E PQ MRVA+G+ + + Sbjct: 134 NADRLNSCIIYDRDFSYNYFGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHGSDIDS- 192 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YN +S +F ++PTLF++ T PQLSSCFL T+P+D L GI L + AM++K Sbjct: 193 --AIETYNYMSEKYFTHASPTLFSAATPKPQLSSCFLVTLPEDNLEGISRCLTQCAMISK 250 Query: 396 YSGGLGNDWTPVRGLGAH----IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +GGLG +R G + GT S G++P L+V N++A V+QGG KR GA Sbjct: 251 TAGGLGVSIHNLRAKGTTFRTTLAGTPKVSDGIVPVLRVFNNSARYVDQGGNKRPGACAI 310 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ +FL+L+KNTG ++ R D+ A W PDLFM+RV + W+L P + L Sbjct: 311 YLEPWHADILDFLNLKKNTGKEQLRARDLFFALWTPDLFMRRVKNDEKWSLMCPHQSPGL 370 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D +G+EFE YE YE + R++ A +WR + ETG P++ +KD CN + Sbjct: 371 ADCWGEEFEKLYEKYETDG-----RYVRQLPARDVWRAICVSQVETGTPYMLYKDACNRK 425 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTA 628 S QQ++G + SSNLCTEI +S +E AVCNL SI N+ + +D++KL + Sbjct: 426 SNQQNLGTIRSSNLCTEIVEFTSPDEIAVCNLASIAVNMFVKADRSGYDFNKLKEITKVV 485 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + L+ VID+N + + +A+KSN HR +G+G+ G A LL +P+ SPEA + + E Sbjct: 486 AKNLNKVIDLNYYPLPEARKSNLRHRPVGIGVQGLADAFILLRMPFDSPEAKALNRQIFE 545 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + + A+ AS ELA++ G Y +++GS QGV D G+ T+ W + Sbjct: 546 TLYYGALEASCELAEKYGPYETYEGSPVSQGVLQYDMWGVTP----------TNLWDWSD 595 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LKK++ G+RNS +A PTA+ A I G ++S +P N+YV+ +SG+F VVN L+ Sbjct: 596 LKKKIAKYGVRNSLLLAPMPTASTAQILGNNESTEPYTSNIYVRRVLSGEFQVVNQHLLK 655 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L +R LWD+ M + + + GSI NI IPDDLK+++ T +EI +I+ A+ R +ID Sbjct: 656 DLTERGLWDDTMKNQIIANYGSIQNIPGIPDDLKQLYKTVWEISQKVIIDMAADRGAFID 715 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL 916 Q+QS+N+++ P+ + ++ W GLKT YYLR++ A +V+KS L Sbjct: 716 QSQSMNIHIAAPNYGVMSSMHFYGWDKGLKTGMYYLRTKPAANPIQFTVDKSKL 769 >gi|195119233|ref|XP_002004136.1| GI18284 [Drosophila mojavensis] gi|193914711|gb|EDW13578.1| GI18284 [Drosophila mojavensis] Length = 771 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 286/738 (38%), Positives = 412/738 (55%), Gaps = 42/738 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATH 245 +Y G+S +L+ + +L +YA + AR + L +E V + V++ K + Sbjct: 11 LYCGVSTQELDNLAAEIAASLTTLHADYALLAARIAVSNLHKETKKVFSDVFEDLFKHVN 70 Query: 246 HEMQCLYP---EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 E P EY H +++ + L + + Y+RDF + Y G + L Sbjct: 71 KETNLPSPLVSEY--------------HYNIVKNNSDRLNSAIIYDRDFGYNYFGFKTLE 116 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 Y L ING E PQ MRVA+G+ E AVE YNLLS F ++PTLF + Sbjct: 117 RSYLLKINGKIAERPQHLLMRVAIGI---HGEDIDSAVETYNLLSERFFTHASPTLFAAA 173 Query: 363 TRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T PQLSSCFL T V D + GIF ++++ AM++K +GG+G + +R G I GTNG S Sbjct: 174 TNRPQLSSCFLLTIVSDSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTS 233 Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 G++P L+V N+ A V+QGG KR GA YLE WH DV EFLDL+KNTG + R D+ Sbjct: 234 NGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLF 293 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 A WIPDLFMKRV N W+L P + L D++G++FE Y YER+ + R I Sbjct: 294 FALWIPDLFMKRVEANEDWSLMCPHKCPGLPDVWGEDFENLYIKYEREG-----RANRVI 348 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A +LW ++ ETG P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVC Sbjct: 349 KAQSLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVC 408 Query: 601 NLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NL SI L + +D+ KL + + L+ +IDIN + + +AKKSN HR IG+G Sbjct: 409 NLASIALNMFVTQEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIG 468 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + GF AL L+ Y S EA + + E I + A+ AS ELAQ G Y ++ GS +G Sbjct: 469 VQGFADALILMRYSYESREAFLLNQQIFETIYYGALEASCELAQRDGPYETYVGSPVSKG 528 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + D + T W+ LKK + G+RNS +A PTA+ A I G + Sbjct: 529 ILQYDMWN----------KSPTDLWDWNALKKSIAQHGVRNSLLIAPMPTASTAQILGNN 578 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 +S +P N+Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP Sbjct: 579 ESFEPYTSNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDEMKNQIISSRGSIQNIESIPK 638 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +++ ++ T +EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT Sbjct: 639 EIRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKT 698 Query: 900 -TYYLRSRSATSVEKSTL 916 YYLR++ A + + T+ Sbjct: 699 GMYYLRTKPAANAIQFTV 716 >gi|292490775|ref|YP_003526214.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] gi|291579370|gb|ADE13827.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] Length = 1695 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 232/411 (56%), Positives = 297/411 (72%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RNG VT FDPSKI+ A+ KAF+AVEG A+ S R+ ++ LT Q V + ++ Sbjct: 27 RVIRRNGKVTGFDPSKIAVAMTKAFLAVEGGSAATSKRIHQTVEALTAQVVEACTRRLET 86 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 VHIEDIQDQVE +LM+ G+HKI R YVLYREER+ RA + P L++ + Sbjct: 87 GGTVHIEDIQDQVELALMRGGYHKIARAYVLYREERTRERAQAAAKTKKKAAEPPLQMTL 146 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG ++ + RL I+EEAC L + + +L+ET +N++DG++E D+E ALI S+RT Sbjct: 147 ADGRVVPLDKARLTRIIEEACQALPETQPQTILNETLRNLFDGVAEQDVERALIMSARTF 206 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IEKEP+Y+ V AR LL+ LRRE L+ ++ AT EM YPEYF YI++G +L+ Sbjct: 207 IEKEPHYSYVAARLLLDSLRREALSFIHGAETHATQGEMAERYPEYFAAYIKQGADLQLI 266 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + +DL L L+ ERDF F YLGLQ LYDRYF+H G R E+PQAFFMRVAMGLA Sbjct: 267 DPRLTQYDLTRLGQALRPERDFEFTYLGLQTLYDRYFIHSGGIRFELPQAFFMRVAMGLA 326 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 + E E+E+R +EFY LLSSF FM STPTLFNSG+ PQLSSC+LTTV DDL GI+ A+++ Sbjct: 327 INEVEREERTIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVADDLDGIYSAIKD 386 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKVANDTAVAVNQ Sbjct: 387 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQ 437 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 231/372 (62%), Positives = 283/372 (76%), Gaps = 5/372 (1%) Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 TEITLN+S +E AVCNLGSINL H N + KL TI TA+R+LDNVID N +++ Sbjct: 1326 TEITLNTSDDEIAVCNLGSINLPQHLDENGLNLPKLEKTITTAMRMLDNVIDYNYYSVPT 1385 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A++SN HR +GLGLMGFQ AL+ L +PYAS AVE AD SME IS++AI AS LA ER Sbjct: 1386 ARRSNLRHRPVGLGLMGFQDALYKLRLPYASEAAVEFADRSMEAISYYAIKASSNLAGER 1445 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y +F+GSLW +G+ PIDSIGLL + R L +RT L WD L+++VKT+GMRNSNCM Sbjct: 1446 GKYCTFEGSLWSKGILPIDSIGLLEQGRGGYLQQDRTQTLDWDGLREQVKTVGMRNSNCM 1505 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK RDLWDE M++DL Sbjct: 1506 AIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKARDLWDEVMVNDL 1565 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 KY DGS+ I+RIP+DLK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKK Sbjct: 1566 KYFDGSVQPIDRIPEDLKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPSGKK 1625 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSS 943 LD +Y+ AW+ GLKTTYYLRS AT VEKST+ LNAV P P + Sbjct: 1626 LDNLYKLAWVRGLKTTYYLRSLGATHVEKSTMTSDQVNTLNAVQSGSPQEPESE--APQA 1683 Query: 944 CTS-DTECEVCQ 954 C+ D +CE CQ Sbjct: 1684 CSILDPDCEACQ 1695 Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 126/169 (74%), Positives = 138/169 (81%), Gaps = 8/169 (4%) Query: 425 IPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 +PF LKV D TA V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRT Sbjct: 792 LPFVYDLKVEGDPSYMTTAALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRT 851 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANW+PDLFMKRV ++ WTLFSPDE DLHDL G+ FE AY YE +A GEIK Sbjct: 852 HDMNTANWVPDLFMKRVAEDGEWTLFSPDETPDLHDLVGQAFEEAYLRYEEKAACGEIKN 911 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 F+K AV LWRKML+MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLC Sbjct: 912 FKKQRAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLC 960 >gi|241854846|ref|XP_002415982.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] gi|215510196|gb|EEC19649.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] Length = 766 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 274/761 (36%), Positives = 434/761 (57%), Gaps = 37/761 (4%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL V ++ + +Y G++ +L+ ++ T+ K P+YA + AR Sbjct: 31 ISKLCYGLNTDFVDPCVITQKVIVGLYPGVTTVELDNLAAETAATMTTKHPDYAILAARL 90 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L +E V+ + +H + + EE K + + ++ +VY Sbjct: 91 AISNLHKET-KKVFSEVMTDLYHMVNETNGKSTPMISEETYKIVMNNADFLNSSIVY--- 146 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 +RDF + Y G + L + L ING +E PQ MRV++G+ + A+E Y Sbjct: 147 ----DRDFNYNYFGFKTLERAHLLKINGKVVERPQHMLMRVSIGI---HGDDLSSAIETY 199 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 NL+S F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K +GG+G Sbjct: 200 NLMSEKWFTQASPTLFNAGTPKPQLSSCFLLQMKDDSIEGIYDTLKQCALISKSAGGIGI 259 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461 + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA+ YLE WH DV + Sbjct: 260 NIHNIRASGSYIAGTNGTSNGIVPMLRVYNNTARYVDQGGNKRPGAIAIYLEPWHADVFD 319 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLDL+KNTG + R D+ WIPDLFMKRV ++ W+L P E L D+YG++FE Sbjct: 320 FLDLKKNTGKEESRARDLFYGLWIPDLFMKRVEEDGIWSLMCPHESPHLQDVYGEDFEKL 379 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y YE E + R++ A LW ++ ETG P++ +KD CN +S Q++VG + Sbjct: 380 YVRYET-----EKRYRRQVRAQQLWSAIIESQTETGTPYMLYKDACNRKSNQKNVGTIKC 434 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLCTEI +S +E AVCNL SI L + FD++KL R R L+ +ID+N + Sbjct: 435 SNLCTEIVEYTSVDEVAVCNLASIALNRFVYHGHFDFEKLRQVTRVVTRNLNKIIDVNYY 494 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 I +AK SN HR IG+G+ G A LL +P+ EA EI + E I + A+ S EL Sbjct: 495 PIPEAKLSNMRHRPIGIGVQGLADAFILLRLPFDCDEACEINKKIFETIYYGALEESCEL 554 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 +++ G Y ++ GS QG+ D + ++ W LK+R+K+ G+RNS Sbjct: 555 SKKFGPYETYPGSPVSQGILQYDMWNVTP----------SNLWDWSALKERIKSFGIRNS 604 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A PTA+ A I G +++++P N+Y + +SG+F +VN L+ +L + LW++ + Sbjct: 605 LLVAPMPTASTAQILGNNEAMEPYTSNVYTRRVLSGEFQIVNHHLLKDLTRLGLWNDNLK 664 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 ++L ++GS+ + IP +LK ++ T +EI ++E ++ R ++DQ+QSLN+++ +P+ Sbjct: 665 NELIANNGSVQKLN-IPKELKMLYRTVWEISQKNILEMSADRGAFVDQSQSLNIHIAQPT 723 Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL 916 KL ++ W +GLKT YYLR++ A +V+KS L Sbjct: 724 YGKLTSMHFCGWKLGLKTGMYYLRTKPAVNAIQFTVDKSLL 764 >gi|290343605|ref|YP_003494972.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1] gi|260161020|emb|CAY39721.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1] Length = 747 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 273/739 (36%), Positives = 418/739 (56%), Gaps = 45/739 (6%) Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 ++ S V + ++YDG++ +++T +I +P+Y E+L Sbjct: 31 KNCDSSKVAQQVASSLYDGIAAQEIDTLSAEVCVGMITSDPDY--------------EIL 76 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293 T + +Q + P F +++ KA ++ E + + +D+ +RD+ F Sbjct: 77 AT------RIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AGRVRDDIVTKRDYDF 129 Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 Y GL+ L Y ++G +E PQ FMRV++G+ E +E Y+ +S F+ Sbjct: 130 GYFGLKTLEKSYLQRLDGILMETPQYMFMRVSIGI---HGEDIPSVLETYDKMSQGMFIH 186 Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTLFN+GT PQ+SSCFL D + GI+G+L E A ++K++GG+G VR + Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKGDSIDGIYGSLTECAQISKWAGGIGMHIHDVRANKS 246 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I GTNG+S G+IP L+V N TA VNQ G+RKG++ YLE WH D+ +FL+LR N GD+ Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMDFLELRLNQGDE 306 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R D+ +A WIPDLFMKRV + W+LF PD+ L + G+EFE Y YE + Sbjct: 307 EARCRDLFSALWIPDLFMKRVEEGGQWSLFCPDKAPGLSEAVGEEFEALYTKYEEEG--- 363 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 + + A +W+ +L ETG P++ +KD CN +S Q+++G + SSNLCTEI + Sbjct: 364 --RANATVPAADVWKAILKSQTETGTPYMLYKDACNTKSNQKNLGTIKSSNLCTEIIEYT 421 Query: 593 SSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +ET+VCNL SI L + N + FDY+KL + + L+ VID N + +E A+KS Sbjct: 422 DKDETSVCNLASI-ALPKYVNEETRSFDYEKLHEITKVVTKNLNRVIDRNFYPVETARKS 480 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IGLG+ G L + + S EA + E + A+ AS ELA+ G Y Sbjct: 481 NMRHRPIGLGVQGLADVFILCRLAFDSDEAKAMNARIFETMYHAALEASSELAEVEGPYE 540 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F+GS QG+ D + E +L + WD LK+R++ +G+RNS MA PT Sbjct: 541 TFEGSPASQGILQFD----MWEGETKLNYD------WDALKERIRGVGLRNSLLMAPMPT 590 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++ +P N+Y++ ++G+F VVN LV +LK+ LW + M + G Sbjct: 591 ASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVEDLKKIGLWSKDMKDLMVKAGG 650 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI NI IPDD+K ++ T +EI +I+ A+ R ++IDQ+QS+NL+++ P+ KL ++ Sbjct: 651 SIQNIVDIPDDIKNLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLFMESPTLSKLSSMH 710 Query: 890 RQAWLMGLKT-TYYLRSRS 907 AW GLKT YYLRS++ Sbjct: 711 MYAWKQGLKTGMYYLRSKA 729 >gi|299743194|ref|XP_001835601.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130] gi|298405544|gb|EAU86172.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130] Length = 895 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 283/772 (36%), Positives = 428/772 (55%), Gaps = 52/772 (6%) Query: 166 VEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 + + C GL +V+ K+V+ +Y G++ +L+ ++ L K P+YA Sbjct: 47 ISKLCYGLDLNFVDPIEVAQKVVVG-----VYQGVTTVELDNLAAETAAYLTTKHPDYAV 101 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-- 276 + AR + L +E +K+ M+ LY EY + G A ++ + + Sbjct: 102 LAARIAVSNLHKET--------KKSFSQVMKDLY-EYVNP--KNGKPAGMISKETWEVIR 150 Query: 277 -DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 + L + + Y RDF + Y G + L Y L +NG E PQ MRVA+G+ ++ + Sbjct: 151 DNADTLDSAIIYNRDFNYNYFGFKTLERSYLLRLNGRVAERPQHMIMRVAVGIHGRDID- 209 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 R +E YNL+S +F ++PTLFN+GT HPQLSSCFL + DD + GI+ L+ AM++ Sbjct: 210 --RVLETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGIYDTLKNCAMIS 267 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G + +R G++I GTNG S G++P L+ + TA V+QGG KR GA Y+E Sbjct: 268 KTAGGIGLNIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAFAIYIE 327 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH DV EFLDLRKN G + R D+ A WIPDLFMKRV + W+LF P+E LHD+ Sbjct: 328 PWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEADGEWSLFCPNEAPGLHDV 387 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + EFE YE YE++ + + I A LW +L ETG P++ +KD N +S Q Sbjct: 388 HSAEFEELYERYEKEG-----RARKTIRAQKLWYAILEAQIETGGPFMVYKDHANAKSNQ 442 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +++G + SSNLCTEI SS +ETAVCNL S+ L + +D+ KL + L+ Sbjct: 443 KNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIKDGVYDFKKLHEVTKVVTYNLN 502 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +ID+N + I +A++SN HR IG+G+ G A L +P+ S A E+ + E I Sbjct: 503 RIIDVNYYPIPEARRSNMRHRPIGIGVQGLADAFMALRMPFDSQAAKELNLQIFETIYHA 562 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ AS E+A G Y +++GS QG D G+ + W LK ++ Sbjct: 563 ALEASSEIAARDGPYETWEGSPASQGQLQYDLWGV----------KPSDLWDWASLKAQI 612 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VV +L+ EL Sbjct: 613 AKTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDL 672 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LWD+ M + + H+GS+ NI IP D+K I+ T +EI +I+ A+ R +I Q+QSL Sbjct: 673 GLWDDNMKNLIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVIDLAADRGAFICQSQSL 732 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGV 919 N++L P+ +L ++ W GLKT YYLR+R A +V++S LK Sbjct: 733 NVHLSAPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSLLKAA 784 >gi|312212194|emb|CBX92278.1| similar to ribonucleoside-diphosphate reductase subunit large [Leptosphaeria maculans] Length = 903 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 270/755 (35%), Positives = 425/755 (56%), Gaps = 39/755 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ KK A H++ Y + G ++ + + + + Sbjct: 82 AVSNLHKQT-----KKQFSAVVHDL------YSYVNPKNGKSQPMISDKVYKIVMAHADE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF +++ G + L Y L ING E PQ MRVA+G+ ++ EK A+ Sbjct: 131 LNSAVVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK---AI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E Y+ +S +F ++PTLFN+GT PQ+SSCFL + +D + GI+ L+ A+++K +GG Sbjct: 188 ETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSIDGIYDTLKTCALISKTAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHAD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V FLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D+YG EF Sbjct: 308 VFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE+YE++ E + A LW +L ETG+P++ +KD CN +S Q+++G Sbjct: 368 EALYESYEKKGKGRET-----VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGT 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SSNLCTEI ++ +E AVCNL S+ L + +FD+ KL + R L+ +I Sbjct: 423 IRSSNLCTEIIEYTAPDEVAVCNLASLALPSFVDYKRGEFDFKKLHEVTQVVTRNLNKII 482 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 ++N + +E+A++SN HR IG+G+ G A L +P+ SPEA ++ + E I A++ Sbjct: 483 EVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESPEAKKLNIQIFETIYHAALT 542 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 +S ++A+E G Y ++ GS QG+ D + T W LK+++ Sbjct: 543 SSCDIAKELGPYETYAGSPVSQGILQYDMWNVTP----------TDLWDWAALKEKIAQY 592 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L LW Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E M + + GSI I IP++ K ++ T +EI +I+ A+ R +IDQ+QSLN++ Sbjct: 653 SENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 + EP+ K+ ++ W +GLKT YYLR+ +A++ Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASA 747 >gi|312599278|gb|ADQ91301.1| hypothetical protein BpV2_134c [Bathycoccus sp. RCC1105 virus BpV2] Length = 748 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 275/746 (36%), Positives = 423/746 (56%), Gaps = 44/746 (5%) Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227 E S DV+ + + + ++YDG+ +++T +I +P+Y + R Sbjct: 27 EGLSETVDVTK--IAQQVFSSIYDGIKTPEIDTLSAEICIGMITSDPDYEILATRI---- 80 Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287 + + K+ H M+ L+ KA ++ +++ + +D+K Sbjct: 81 ----TASNIQKRAANNFHIAMRKLH------------KAGIVTHEVLEVS-SKVKDDIKP 123 Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ERDF F Y GL+ L Y I+G IE PQ +MRVA+G+ + + +E Y LS Sbjct: 124 ERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYMYMRVAIGIHGHDID---HVLETYEALS 180 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTP 406 F+ +TPTLFN+GT PQ+SSCFL + +D + GI+ ++E A ++K++GG+G Sbjct: 181 KGLFIHATPTLFNAGTPRPQMSSCFLISNKEDSIDGIYDTVKECARISKWAGGIGLHIHD 240 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 VR +HI GTNG S G+IP L+V N TA VNQ G+RKG++ YLE WH D+ +FL++R Sbjct: 241 VRANKSHIRGTNGTSDGIIPMLRVYNTTARYVNQAGRRKGSIAVYLEPWHADILDFLEIR 300 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 N GD+ R D+ +A WIPDLFMKRV W+LF PD L D+YGKEFE YE YE Sbjct: 301 LNQGDEEARCRDLFSAMWIPDLFMKRVESGGNWSLFCPDVARGLSDVYGKEFEELYEKYE 360 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 AD KV + A +W+ ++ ETG P++ +KD CN +S +H+G + SSNLCT Sbjct: 361 --ADGIATKV---VPASEVWKAIIKSQSETGTPYMLYKDACNEKSNHKHIGTIKSSNLCT 415 Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI + +ETAVCNL SI L + +F++++L + R L+ VID N + E Sbjct: 416 EIVEYTDKDETAVCNLASIALPKYVDVEKKEFNHEELHRVTKMVTRNLNKVIDKNFYPTE 475 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 K+SN HR IG+G+ G +L + + S E+ ++ + E I ++ +S ELA+ Sbjct: 476 NGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESRKLNIDIFETIYHASLESSCELAEM 535 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y SFKGS + +G+ D RD + R W+ +++ VK G NS + Sbjct: 536 YGPYESFKGSPFSKGILQFDMWD-----RDP---KFSGRYDWNAMRELVKK-GTMNSLLL 586 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ + I G ++ +P N+Y++ ++G+F VVN LVN+LK+R LW + M + Sbjct: 587 APMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVNDLKERGLWSKEMKDLM 646 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 +GS+ NI IPDDLK+++ T +E+ +I+ A+ R +IDQ+QS+NL+++ P+ K Sbjct: 647 VKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMAADRGVYIDQSQSMNLFVESPTISK 706 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT 909 L ++ AW GLKT YYLRS++ + Sbjct: 707 LSSMHMYAWKTGLKTGMYYLRSKAKS 732 >gi|146091813|ref|XP_001470128.1| ribonucleoside-diphosphate reductase large chain [Leishmania infantum] gi|134084922|emb|CAM69320.1| putative ribonucleoside-diphosphate reductase large chain [Leishmania infantum JPCM5] Length = 799 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 276/678 (40%), Positives = 391/678 (57%), Gaps = 33/678 (4%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335 L + + Y RD FE+ G + L Y L I R EM PQ FMRVA+G+ + Sbjct: 136 LQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGADL-- 193 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 K E Y+L+S F +TPTLFN+GT PQ+SSCFL +D + GI+ L+E A+++ Sbjct: 194 -KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAVIS 252 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +R G++I GTNG S G++P L+V N+TA V+QGG KRKGA YLE Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH DV FL L++NTG D +R D+ A WIPDLFM+RV WTL P+ L D Sbjct: 313 PWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLSDC 372 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG+EFE YE YE + RG + I A +W +L ETG P+I +KD CN +S Q Sbjct: 373 YGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKSNQ 427 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631 +++G + SNLCTEI +S +ETAVCNL SI L +F++ L + + R Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTKQITRN 487 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ VID N + +E A++SN +R IGLG+ G A L+ +P+ S EA + E E I Sbjct: 488 LNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIY 547 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A+ +S+ELA+E G Y +F GS +G+ D + A + R W LK+ Sbjct: 548 FAAVESSMELAKEDGPYETFTGSPASEGILQFDMW--------KNARPNSGRWDWASLKE 599 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +V +GMRNS +A PTA+ + I G ++ +P N+YV+ +SG+F VVN +LV +L Sbjct: 600 KVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 R LW+E+M +++ ++GSI I +PDDL++++ T +EI LI+ A R ++IDQ+Q Sbjct: 660 ARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 SLNL+L P+ ++ + W GLKT YYLR+++A K T VD K Sbjct: 720 SLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKFT---VDAKRMKEIQER 776 Query: 931 PNS----STHSLGIPSSC 944 NS S+H P C Sbjct: 777 ENSQQTMSSHRASQPEEC 794 >gi|213409966|ref|XP_002175753.1| ribonucleoside-diphosphate reductase large chain [Schizosaccharomyces japonicus yFS275] gi|212003800|gb|EEB09460.1| ribonucleoside-diphosphate reductase large chain [Schizosaccharomyces japonicus yFS275] Length = 824 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 282/765 (36%), Positives = 431/765 (56%), Gaps = 49/765 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + V +Y G++ +L+ ++ T+ K P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAVTQRVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81 Query: 224 LLEKLRREV---LTTVYKK------PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ ++V +K P+ H M +E + + H+ + Sbjct: 82 AVSNLHKQTDKAFSSVVQKLHDWVNPKTGKHAPMIS----------DEVYEIVMKHKDEL 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 D ++Y +RDF + Y G + L Y L I+G E PQ MRVA+G+ + E Sbjct: 132 DSAIIY-------DRDFTYNYFGFKTLERSYLLRIDGKVAERPQHLIMRVAVGIHHDDIE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 A+E YN +S +F ++PTLFN+GT PQLSSCFL T+ DD + GI+ L+ AM+ Sbjct: 185 A---AIETYNYMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYETLKTCAMI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA AYL Sbjct: 242 SKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAAYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV +F++LRK G + R ++ A WIPDLFM+RV +N W+ F P+E L D Sbjct: 302 EPWHPDVLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWSFFCPNEAPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 ++G+EFE YE YER+ + R + A +W +++ ETG+P++ +KD CN +S Sbjct: 362 VWGEEFEELYERYEREG-----RARRVLPAQKVWYEIIRAQSETGNPFMLYKDSCNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 Q+++G + SNLCTEI SS +E AVCNL SI L + ++D+ +L + + R L Sbjct: 417 QKNLGTIRCSNLCTEIVEYSSPDEVAVCNLASIALPMFIHDGKYDFQQLHNVAKVVTRNL 476 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VID+N + + +A++SN HR +GLG+ G A L PY SPEA ++ E I Sbjct: 477 NRVIDVNYYPVPEARRSNLRHRPVGLGVQGLADAFFKLRYPYESPEARKLNLLIFETIYH 536 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS ELA E G Y +++GS QG+ D + T W LK + Sbjct: 537 AALEASCELAAEEGPYETYEGSPASQGILQYDMWNVTP----------TDLWDWASLKAK 586 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F +VN +L+ +L Sbjct: 587 IAKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLRDLVD 646 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LWDE M + L +DGSI I IP DLK ++ T +EI +I+ A+ R +IDQ+QS Sbjct: 647 LGLWDEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWEISQRTVIDYAADRGAFIDQSQS 706 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ +PS K+ ++ W GLKT YYLR+ +A++ K T+ Sbjct: 707 LNIHIKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTV 751 >gi|50290817|ref|XP_447841.1| hypothetical protein [Candida glabrata CBS 138] gi|49527152|emb|CAG60790.1| unnamed protein product [Candida glabrata] Length = 894 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/761 (37%), Positives = 424/761 (55%), Gaps = 37/761 (4%) Query: 166 VEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 + C GL + + V +Y+G++ +L+ + + P+YA + AR Sbjct: 22 ISRLCYGLDPRIDAVKVTQRIISGVYEGVTTVELDNLAAETCAYMTTIHPDYATLAARVA 81 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 + L ++ T + + +H + ++ +E + + ++ +D +VY Sbjct: 82 ISNLHKQT-TKQFSQVVSNLYHYINPATGKHAPMISDEVYQIVMDNKDELDSAIVY---- 136 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 +RDF F Y G + L Y L ING E PQ MRVA+G+ ++ E A+E YN Sbjct: 137 ---DRDFQFNYFGFKTLERSYLLRINGEVAERPQHLIMRVALGIHGRDLEA---ALETYN 190 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403 L+S +F ++PTLFN+GT HPQ+SSCFL + DD + GI+ L+E A+++K +GG+G Sbjct: 191 LMSLRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEGIYDTLKECALISKTAGGIGLH 250 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462 +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D+ +F Sbjct: 251 IHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDF 310 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 +D+RKN G + R D+ A W+PDLFMKRV QN WTLFSP L D YGKEFE Y Sbjct: 311 IDIRKNHGKEEIRARDLFPALWVPDLFMKRVEQNGNWTLFSPSSAPGLSDCYGKEFEELY 370 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E YER+ RG + I A LW +L ETG P++ +KD CN +S Q+++GV+ SS Sbjct: 371 ERYEREG-RG-----KTIKAQKLWYSILEAQTETGTPFMIYKDACNEKSNQRNLGVIKSS 424 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVI 636 NLC EI SS +ETAVCNL SI L A ++ +++ KL + R L+ VI Sbjct: 425 NLCCEIVEYSSPDETAVCNLASIALPAFIETSEDGKTSTYNFQKLHDIAKVITRNLNKVI 484 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D N + + +AK SN HR I LG+ G LL +P+ S A ++ + E I ++ Sbjct: 485 DRNYYPVPEAKNSNMRHRPIALGVQGLADTFMLLRLPFDSEGAAKLNIQIFETIYHASLE 544 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELAQ+ G Y S++GS +GVF D WD L+K + Sbjct: 545 ASCELAQKDGPYQSYQGSPISKGVFQFDMWN----------AKPFGMWDWDALRKDILKH 594 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS MA PTA+ + I G ++ +P N+Y + +SG+F VVN +L+ +L +W Sbjct: 595 GVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIW 654 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 DE M + +GSI N+ IP +LK ++ T +EI +I A+ R +IDQ+ SLNL+ Sbjct: 655 DEGMKQHIITQNGSIQNLPNIPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLF 714 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 L P+ K+ ++ W GLKT YYLR+++A++ + T+ Sbjct: 715 LQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755 >gi|322493171|emb|CBZ28456.1| ribonucleoside-diphosphate reductase large chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 799 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 270/652 (41%), Positives = 384/652 (58%), Gaps = 29/652 (4%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335 L + Y RD +FE+ G + L Y L I R EM PQ FMRVA+G+ + Sbjct: 136 LQGMIDYSRDLSFEFFGYKTLERSYLLRIESGRGEMRIVERPQQMFMRVALGIHGTDL-- 193 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 K E Y+L+S F +TPTLFN+GT PQ+SSCFL +D + GI+ L+E A+++ Sbjct: 194 -KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAVIS 252 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +R G++I GTNG S G++P L+V N+TA V+QGG KRKGA YLE Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ FL L++NTG D +R D+ A WIPDLFM+RV WTL P+ L D Sbjct: 313 PWHADIFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLSDC 372 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG+EFE YE YE + RG + I A +W +L ETG P+I +KD CN +S Q Sbjct: 373 YGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKSNQ 427 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631 +++G + SNLCTEI +S +ETAVCNL SI L +F++ L + + R Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTKQITRN 487 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ VID N + +E A+ SN +R IGLG+ G A L+ +P+ S EA + E E I Sbjct: 488 LNRVIDRNYYPVETARHSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIY 547 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A+ +S+ELA+E G Y +FKGS +G+ D + R + R W LK+ Sbjct: 548 FAAVESSMELAKEEGPYETFKGSPASEGILQFD---MWKNPRPN-----SGRWDWASLKE 599 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +V +G+RNS +A PTA+ + I G ++ +P N+YV+ +SG+F VVN +LV +L Sbjct: 600 KVMQVGLRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 R LW+E+M +++ ++GSI I IPDDL++++ T +EI LI+ A R ++IDQ+Q Sbjct: 660 ARGLWNESMRNEIISYNGSILTINGIPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922 SLNL+L P+ ++ + W GLKT YYLR+++A K T VD K Sbjct: 720 SLNLFLQSPTSGQITSMLFYCWEAGLKTGLYYLRTKAAADAIKFT---VDAK 768 >gi|322500426|emb|CBZ35503.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 799 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 275/678 (40%), Positives = 391/678 (57%), Gaps = 33/678 (4%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335 L + + Y RD FE+ G + L Y L I R EM PQ FMRVA+G+ + Sbjct: 136 LQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGADL-- 193 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 K E Y+L+S F +TPTLFN+GT PQ+SSCFL +D + GI+ L+E A+++ Sbjct: 194 -KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAVIS 252 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +R G++I GTNG S G++P L+V N+TA V+QGG KRKGA YLE Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH DV FL L++NTG D +R D+ A WIPDLFM+RV WTL P+ L D Sbjct: 313 PWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLSDC 372 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG+EFE YE YE + RG + I A +W +L ETG P++ +KD CN +S Q Sbjct: 373 YGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFVLYKDACNSKSNQ 427 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631 +++G + SNLCTEI +S +ETAVCNL SI L +F++ L + + R Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTKQITRN 487 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 L+ VID N + +E A++SN +R IGLG+ G A L+ +P+ S EA + E E I Sbjct: 488 LNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIY 547 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 F A+ +S+ELA+E G Y +F GS +G+ D + A + R W LK+ Sbjct: 548 FAAVESSMELAKEDGPYETFTGSPASEGILQFDMW--------KNARPNSGRWDWASLKE 599 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +V +GMRNS +A PTA+ + I G ++ +P N+YV+ +SG+F VVN +LV +L Sbjct: 600 KVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 R LW+E+M +++ ++GSI I +PDDL++++ T +EI LI+ A R ++IDQ+Q Sbjct: 660 ARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 SLNL+L P+ ++ + W GLKT YYLR+++A K T VD K Sbjct: 720 SLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKFT---VDAKRMKEIQER 776 Query: 931 PNS----STHSLGIPSSC 944 NS S+H P C Sbjct: 777 ENSQQTMSSHRASQPEEC 794 >gi|187608195|ref|NP_001120566.1| ribonucleotide reductase M1 [Xenopus (Silurana) tropicalis] gi|171847253|gb|AAI61529.1| LOC100145720 protein [Xenopus (Silurana) tropicalis] Length = 797 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/762 (37%), Positives = 439/762 (57%), Gaps = 42/762 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + V + + + +Y+G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNLEFVDPAQITMKVIQGLYNGVTTIELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY Y+ G + ++ + +D L Sbjct: 82 AVSNLHKET--------KKIFSDVMEDLY-----NYVNPLNGKHSPMVSKETLDLVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ + G + L Y L I+G E PQ MRV++G+ + + Sbjct: 129 DRLNSSIIYDRDFSYNFFGFKTLERSYLLKIDGKVAERPQHMLMRVSVGIHKTDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DV EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P E L +++G Sbjct: 306 YDVFEFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 +FE YE YER+ + + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 KFEELYERYEREG-----RARKVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + FD+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSDDEVAVCNLASLALNMYVTPERSFDFKKLADVTKVIVRNLNKI 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I+IN + + +A+ SN HR IG+G+ G A L+ P+ S EA + + E I + A+ Sbjct: 481 IEINFYPVPEAEYSNKRHRPIGIGVQGLADAFILMRYPFESEEAQLLNKQIFETIYYAAL 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +S ELA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 541 ESSCELAKELGPYDTYEGSPVSKGILQYDMWNVTP----------TGLWDWAALKEKIAK 590 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R L Sbjct: 591 YGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTERGL 650 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M + + ++GSI N+ IP DLK+++ T +EI +I A+ R +IDQ+QSLN+ Sbjct: 651 WNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNI 710 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 711 HVAEPNYGKLTSMHFFGWKQGLKTGMYYLRTRPAANPIQFTL 752 >gi|290984045|ref|XP_002674738.1| ribonucleotide reductase [Naegleria gruberi] gi|284088330|gb|EFC41994.1| ribonucleotide reductase [Naegleria gruberi] Length = 812 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 276/770 (35%), Positives = 445/770 (57%), Gaps = 31/770 (4%) Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY 216 F+S+++ + +++ L ++ ++ + +++ ++ L+ + + P+Y Sbjct: 14 FSSEKIRIRLQDHTKDLYHINIDSIIEKLQLEIHNDITTEKLDNLIAECIAYMAYSHPDY 73 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 K+ R + L + + K + H ++P + + L+ E + + Sbjct: 74 LKLAGRVKVSTLHKHTKS----KFSEVVHDLRNFIHPR-------TNLPSPLISEEVFNV 122 Query: 277 ---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKE 332 ++ L +K ERDF F+Y G + L Y L + SRI E PQ FMRV++G+ + Sbjct: 123 VAANVDVLDQAIKSERDFQFDYFGYKTLERSYLLKLADSRIAERPQHMFMRVSLGIHGGD 182 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 E RA++ Y+LLSS F+ ++PTLFN+GT PQ+SSCFL ++ DD ++GI+ L+ A Sbjct: 183 IE---RAIQTYDLLSSGMFIHASPTLFNAGTPIPQMSSCFLVSMKDDSIHGIYDTLKTCA 239 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +++K +GG+G +R G++I GTNG S G+IP L+V NDTA V+QGG KRKGA Sbjct: 240 LISKSAGGIGLSVHNIRASGSYIRGTNGTSNGLIPMLRVFNDTARYVDQGGGKRKGAFAI 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ +FLDLRKN G + R D+ W+ DLFM+RV +A W+LF P+E L Sbjct: 300 YLEPWHSDIFDFLDLRKNHGKEEIRARDLFLGLWVNDLFMQRVKDDAEWSLFCPNEAQGL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D++G+EF Y YER+ K R I A LW ++ ETG P++ +KD CN + Sbjct: 360 ADVWGEEFNQLYTKYEREG-----KAKRTIKAQELWFAIIEAQIETGVPYMLYKDSCNRK 414 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRT 627 S QQ++G + SSNLCTEI ++ +E AVCNL SI L + N + +D+ KL ++ Sbjct: 415 SNQQNLGTIKSSNLCTEIIEFTAPDEVAVCNLASI-ALPKYVNEETQTYDHQKLYEVVKI 473 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A L+ +ID N + +E+AKKSN HR IGLG+ G A + +P+ S EA + E Sbjct: 474 ATYNLNKIIDKNYYPVEEAKKSNFRHRPIGLGVQGLADAFIKMRLPFESEEAKNLNREIF 533 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I F A++ S+ELA+ G Y +++GS +G+F + E + + + R W+ Sbjct: 534 ETIYFAAMTCSMELAKVEGTYETYEGSPISKGIFQHEFWTREGEPFEGKTIT-SGRWDWE 592 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+++V G+RNS +A PTA+ + I G ++ +P N+Y + +SG++ V+N LV Sbjct: 593 GLRQQVLQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNVYTRRVLSGEYPVINRHLV 652 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +L + D+W+ +++ + + GSI NI+ IPDD+K+++ T +EI L++ A R +I Sbjct: 653 ADLIKIDMWNPTIVNQIIGNRGSIQNIQGIPDDIKELYKTVWEIKQRSLLDLAIERSPFI 712 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 DQ+QSLN+++ PS K+ ++ AW GLKT YYLR++ A + T+ Sbjct: 713 DQSQSLNVFISIPSVSKMSSMHFYAWSKGLKTGMYYLRTQPAADAIQFTV 762 >gi|195456500|ref|XP_002075166.1| GK23355 [Drosophila willistoni] gi|194171251|gb|EDW86152.1| GK23355 [Drosophila willistoni] Length = 768 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 283/754 (37%), Positives = 420/754 (55%), Gaps = 41/754 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATH 245 +Y G++ +L+ + L +YA + AR + L +E V + V+++ + Sbjct: 41 LYCGVTTQELDNLAAEIAAGLTCNHADYAILAARIAVSNLHKETKKVFSEVFEELYHHVN 100 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 E P H +++ + L + + Y+RDF + Y G + L Y Sbjct: 101 KETNNPSP-----------MVSSYHYNIVKNNADRLNSAMIYDRDFGYNYFGFKTLERSY 149 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L ING E PQ MRVA+G+ E AVE YNLLS +F ++PTLF + T Sbjct: 150 LLKINGKVAERPQHMLMRVAIGI---HGEDIDAAVETYNLLSERYFTHASPTLFAAATNR 206 Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSCFL T+ D + GIF +++ AM++K +GG+G + +R G I GTNG S G+ Sbjct: 207 PQLSSCFLLTMTSDSIEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGL 266 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V N+ A V+QGG KR GA YLE WH D+ EFLDL++NTG + R D+ A Sbjct: 267 VPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDIFEFLDLKRNTGKEEHRARDLFYAL 326 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV N W+L P + L D++G +FE Y YE++ I + A Sbjct: 327 WIPDLFMKRVEANEDWSLMCPHKCPGLEDVWGDKFEELYVKYEKEGLANRI-----VKAQ 381 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +LW ++ ETG+P++ FKD CN +S QQ+VG + SNLCTE+ S+ +E AVCNL Sbjct: 382 SLWFAIIESQVETGNPYMLFKDSCNKKSNQQNVGTIKCSNLCTEVVEYSAPDEIAVCNLA 441 Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 SI L ++ +D+ KL + + L+ +ID+N + + +AKKSN HR IG+G+ G Sbjct: 442 SIALNMFVTTDKTYDFKKLKEVTKIVAKNLNKIIDVNYYPLPEAKKSNLKHRPIGIGVQG 501 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 AL L+ +PY S +A + + E I F A+ AS ELAQ G Y +FKGS +G+ Sbjct: 502 LADALILMRLPYESKQACLLNQQIFETIYFGALEASCELAQMYGPYETFKGSPASRGILQ 561 Query: 723 IDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D + + S L W++LK +K G+RNS +A PTA+ A I G ++S Sbjct: 562 YD-----------MWNKKPSDLWDWNKLKAAIKEHGIRNSLLVAPMPTASTAQIMGNNES 610 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ Sbjct: 611 FEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNKIVSSRGSIQNIEVIPQNV 670 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 + ++ T +EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT Sbjct: 671 RDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKSGLKTGM 730 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 YYLR++ A + T VD +A ++ N S Sbjct: 731 YYLRTKPAAHAIQFT---VDKNASATIISSQNGS 761 >gi|297268642|ref|XP_002799730.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Macaca mulatta] Length = 711 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 256/623 (41%), Positives = 383/623 (61%), Gaps = 22/623 (3%) Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 L+ L Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PT Sbjct: 67 LKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPT 123 Query: 358 LFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 LFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I G Sbjct: 124 LFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAG 183 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 TNG S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R Sbjct: 184 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 243 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q + Sbjct: 244 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----R 298 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S + Sbjct: 299 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 358 Query: 596 ETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E AVCNL S+ L + + +D+ KLA + VR L+ +IDIN + + +A SN HR Sbjct: 359 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHR 418 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS Sbjct: 419 PIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGS 478 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +G+ D + T W+ LK+ + G+RNS +A PTA+ A Sbjct: 479 PVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQ 528 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I Sbjct: 529 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSI 588 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W Sbjct: 589 PEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 648 Query: 895 MGLKT-TYYLRSRSATSVEKSTL 916 GLKT YYLR+R A + + TL Sbjct: 649 QGLKTGMYYLRTRPAANPIQFTL 671 >gi|50426387|ref|XP_461790.1| DEHA2G05610p [Debaryomyces hansenii CBS767] gi|49657460|emb|CAG90249.1| DEHA2G05610p [Debaryomyces hansenii] Length = 867 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 279/768 (36%), Positives = 431/768 (56%), Gaps = 51/768 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VQRLCYGLDTTHVEPVAITQRVISGVYQGVNTIELDNLAAETAAYMTTIHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280 + L +K+ K + LY Y+ LH M+ +D++ Sbjct: 82 AVSNL--------HKQTTKQFSQVSKELY-----EYVNPKTD---LHSPMISKDTYDIIQ 125 Query: 281 L-ANDLK----YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 AN+L ++RDF + Y G + L Y L ING E PQ MRVA+G+ + E Sbjct: 126 ANANELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDIE- 184 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 R +E YN++S +F +PTLFN+GT PQ+SSCFL + DD + GI+ L+ A+++ Sbjct: 185 --RVIESYNMMSLRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSIDGIYDTLKTCALIS 242 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 243 KSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WTLFSP+E L D+ Sbjct: 303 PWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAKGLSDV 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG EFE Y YE++ +RG + A LW +L ETG P++ +KD CN ++ Q Sbjct: 363 YGDEFEELYTKYEKE-NRGR----SVVKAQKLWYAILDAQTETGTPFMLYKDACNKKTNQ 417 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629 +++G++ SSNLC EI S+ +E AVCNL SI L A N +D++KL + Sbjct: 418 KNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPAFVDKNNTTSWYDFEKLHEVTKVVT 477 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R L+ +ID N + + +A+ SN +R I LG+ G A L +P+ S EA E+ + E Sbjct: 478 RNLNRIIDRNYYPVPEARNSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNTQIFET 537 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A+ AS+ELA+ G Y +++GS +G+ D L E + T WD L Sbjct: 538 IYHGAVEASIELAEIEGPYQTYEGSPASKGILQFD----LWERKP------TELWDWDTL 587 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ + Sbjct: 588 KQKLAKHGIRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRD 647 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L +W++ M +++ ++GSI + IPD+LK ++ T +EI +I+ A+ R +IDQ Sbjct: 648 LVDLGIWNDDMKNNIISNNGSIQTLPNIPDELKALYKTVWEISQKHIIDMAADRAAFIDQ 707 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +QSLN+++ +P+ KL ++ W GLKT YYLR+++A + + T+ Sbjct: 708 SQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755 >gi|323452424|gb|EGB08298.1| hypothetical protein AURANDRAFT_37557 [Aureococcus anophagefferens] Length = 793 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 275/771 (35%), Positives = 427/771 (55%), Gaps = 35/771 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++++ +G + ++ +++ C GL + + + + + +YDG++ +L+ Sbjct: 7 MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 66 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + + P+++ + AR + L + T +K H M + +E Sbjct: 67 AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK-LHKHMHPKTKKPAALISDE 125 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 H+ ++ +VY ERDF ++Y G + L Y + ++G+ E PQ M Sbjct: 126 TYATVQKHKDAINAAIVY-------ERDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 178 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + A+E Y ++S F +TPTLFN+GT PQLSSCFL + +D + Sbjct: 179 RVALGI---HGDDLAAALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 235 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA V+QG Sbjct: 236 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYVDQG 295 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G +RKG+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV N W+ Sbjct: 296 GGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWS 355 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D +G EFE YE YE E + + I A LW +L ETG P+ Sbjct: 356 LMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLWFAILDSQVETGTPY 410 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616 + +KD CN +S Q+H+G + SSNLCTEI ++S+E AVC L SINL H F Sbjct: 411 MLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATF 470 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL T + L+ V+D+N + +E+AK SN HR +G+G+ G AL L PY S Sbjct: 471 DFAKLKRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYES 530 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A I + E I F A+ AS++LAQE G Y S+ GS QG+F D L V+ Sbjct: 531 DDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFD----LWNVKP-- 584 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + R W+ L+ R+ G RNS +A PTA+ A I G ++S +P N+Y + ++ Sbjct: 585 ----SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRRVLA 640 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L LW + + + GS+ + IPDDLK ++ T +EI + Sbjct: 641 GEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCV 700 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 ++ ++ R +I Q+QSLNL++ +P+ KL ++ AW GLKT YYLR+R Sbjct: 701 LDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTR 751 >gi|312385901|gb|EFR30291.1| hypothetical protein AND_00204 [Anopheles darlingi] Length = 775 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 266/646 (41%), Positives = 384/646 (59%), Gaps = 27/646 (4%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L I G +E PQ MRVA+G+ E A+ Sbjct: 116 LNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHMLMRVAIGI---HGEDIDSAI 172 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNLLS +F ++PT+F + T+ PQLSSCFL T+ DD + GI+ L++ A+++K +GG Sbjct: 173 ETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSDDSIEGIYDTLKQCALISKSAGG 232 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +R G +I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH D Sbjct: 233 IGLNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHGD 292 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EFLDL+KNTG + R DM A WIPDLFM+RV N W+L P + L + +G+EF Sbjct: 293 VFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMCPHDCPGLSETWGEEF 352 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y YER+ + R++ A LW ++ ETG P++ +KD CN +S QQ++G Sbjct: 353 EKLYTGYEREG-----RFTRQVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQNIGT 407 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID 637 + SNLCTEI SS +E AVCNL SI L ++ +D+ KL +T + L+ +ID Sbjct: 408 IKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDRTYDFAKLKEVAKTVTKNLNKIID 467 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + + +AK+SN HR IG+G+ G A L+ PY S EA + + E I F A+ A Sbjct: 468 INYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRHPYESEEAQLLNQQMFETIYFGALEA 527 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ELA + G Y S+ GS +G+ D + E + T W ELK+ + T G Sbjct: 528 SCELAAQDGPYESYDGSPVSKGILQYD----MWEKKP------TELWDWAELKRNIVTHG 577 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNS +A PTA+ A I G ++S +P N+Y + +SG+F VVN L+ +L + +LWD Sbjct: 578 VRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELWD 637 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + M + + +GSI IE IP ++ ++ T +EI I+ A+ R +IDQ+QS N+++ Sbjct: 638 DEMKNKILAQNGSIQKIEEIPQHIRNLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIHV 697 Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917 EP+ KL I+ W MGLKT YYLR++ A +V+KS L+ Sbjct: 698 AEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKSKLQ 743 >gi|170579939|ref|XP_001895047.1| ribonucleoside-diphosphate reductase large chain [Brugia malayi] gi|158598142|gb|EDP36102.1| ribonucleoside-diphosphate reductase large chain, putative [Brugia malayi] Length = 1061 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 295/832 (35%), Positives = 463/832 (55%), Gaps = 60/832 (7%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSE-TYKNMYDGLSESDLETALIF 204 ++ DG + + ++ + + C GL QD I +S+ +Y G++ +L+ Sbjct: 13 VVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAAE 72 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + +I K P+YA + +R + L +KK +K+ + LY + + G Sbjct: 73 IAADMITKHPDYATLASRITVSNL--------HKKTEKSFSKLSRRLYN---ATHPKSGR 121 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 L+ + + D + L + + +ERD+ + Y GL+ L Y L ING E PQ Sbjct: 122 HMPLISKELFDIIQNNANLLDSAIVHERDYLYTYFGLKTLERSYLLQINGELAERPQHML 181 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380 MRVA+G+ ++ E A+E YNL+S F +TPTLFNSGT PQ+SSCFL T+ D + Sbjct: 182 MRVALGIHGEDIEA---ALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFEDSI 238 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L++ A+++K +GG+G + +R G+ I GTNG S G++P L+V N+ A V+Q Sbjct: 239 EGIFETLKKCALISKSAGGIGLNVHCIRASGSAIAGTNGVSNGLVPMLRVFNNAARYVDQ 298 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA YLE WH D+ +FL+LRKN GD+ R D+ W+PDLFM+RV + W Sbjct: 299 GGNKRPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIW 358 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P E L D +G+ FE Y YE + + +++ A LW ++ ETG P Sbjct: 359 SLMCPAECPGLEDSWGEAFEKLYTQYEEEG-----RYRKQVPARKLWETIVFTQIETGMP 413 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 ++ +KD CN ++ QQ++G + SNLCTE+ L SS EE AVCNL SI L F ++ YD Sbjct: 414 YMVYKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASI-ALGRFVTSEMKYD 472 Query: 620 --KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 L + V+ L+ VID N + I +A++SN HR IG+G+ G A L+ P+ S Sbjct: 473 FKMLHEVTKVVVKNLNKVIDRNYYPIPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSE 532 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E I + A+ AS +LA+E+G Y S++GS +G+ D G+ Sbjct: 533 KARDLNKRIFETIYYAALEASCDLAKEQGPYESYEGSPISKGILQFDMWGVTP------- 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T + W L++++ G+RNS ++ PTA+ A I G ++SI+P N+Y ++ +SG Sbjct: 586 ---TDQCDWGTLREKIAKFGIRNSVLLSPMPTASTAQILGNNESIEPYTSNVYTRNVLSG 642 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F + N L+N+L DLWD+ M ++ + GSI NIERIP +++ ++ T +E+ +I Sbjct: 643 SFQIFNMHLMNDLMHLDLWDDDMKLEIIKNKGSIQNIERIPQEIRDLYRTVWEMSQRDII 702 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW-------LM--GLKT-TYYLRSRS 907 + A+ R +IDQ+QSLN+++ P+ + ++ W LM GLKT YYLR+R Sbjct: 703 DMAADRGAFIDQSQSLNIFIARPNYGNITSMHFYGWQKVCTAFLMYKGLKTGMYYLRTRP 762 Query: 908 AT-----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 A +V+K+ LK D +N D NS + S IP++ TS+ +V + Sbjct: 763 AVDAVQFTVDKTRLKEYDS-VNG----DKNSKSSSSSIPAT-TSELATKVME 808 >gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST] gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST] Length = 809 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 280/779 (35%), Positives = 441/779 (56%), Gaps = 32/779 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201 K+ + DG + ++ +++ C GL D + ++ +Y G++ +L+ Sbjct: 9 KMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLRVINGLYSGVTTQELDNL 68 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ TL +YA + AR + L +E KK H++ + E+ + Sbjct: 69 AAETAATLTTDHADYAILAARLAVSNLHKET-----KKQFSEVMHDLYMMENEFL--KTK 121 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + + ++ +MD + L + + Y+RDF + Y G + L Y L I G +E PQ Sbjct: 122 SPMISDFHYKVIMD-NADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHML 180 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ + A+E YNLLS +F ++PT+F + T+ PQLSSCFL T+ +D + Sbjct: 181 MRVAIGIHGEDIDA---AIETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSEDSI 237 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L++ A+++K +GG+G + +R G +I GTNG S G++P L+V N+TA V+Q Sbjct: 238 EGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYISGTNGISNGLVPMLRVYNNTARYVDQ 297 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA YLE WH D+ EFLDL+KNTG + R DM A WIPDLFM+RV N W Sbjct: 298 GGNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMW 357 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L D +G+EFE Y YE++ + R++ A LW ++ ETG P Sbjct: 358 SLMCPHDCPGLSDTWGEEFEKLYTGYEKEG-----RFIRQVKAQDLWFAIIESQVETGVP 412 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618 ++ +KD CN +S QQ++G + SNLCTEI SS +E AVCNL SI L ++ +D+ Sbjct: 413 YMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVKQDKTYDF 472 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL +T R L+ +ID+N + + +AK+SN HR IG+G+ G A L+ PY S E Sbjct: 473 AKLKEVAKTVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYESEE 532 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I + A+ AS ELA G Y +++GS +G+ L E+ ++ Sbjct: 533 AQKLNQQIFETIYYGALEASCELAARDGPYETYEGSPVSKGI-------LQYEMWNK--- 582 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W ELK+++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+ Sbjct: 583 EPTDLWNWAELKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGE 642 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN L+ +L LWD M +++ ++GSI I IP +++ ++ T +EI I+ Sbjct: 643 FQVVNHHLLQDLTNMGLWDLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTCIK 702 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 A+ R +IDQ+QS N+++ EP+ KL I+ W MGLKT YYLR++ A + + T+ Sbjct: 703 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTV 761 >gi|307196361|gb|EFN77956.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos saltator] Length = 849 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 276/755 (36%), Positives = 430/755 (56%), Gaps = 42/755 (5%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 V V + + +Y G++ +L+ ++ T+ + P+YA + AR + L +E Sbjct: 65 VDPSAVAIQVIRGLYSGVTTVELDNLAAETAATMATQHPDYAILAARIDVSNLHKET--- 121 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFA 292 KK H++ ++ R ++ E +++ + L + + Y+RDF Sbjct: 122 --KKSFSEVMHDL------HYARDPITNEPNPVISEHYYNIIKRNAERLDSAIIYDRDFN 173 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + Y+G + L Y L ING +E PQ MRVA+G+ + K +E Y+ LS +F Sbjct: 174 YNYMGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHEDDINK---VIETYDYLSERYFT 230 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTLFN+ T++ Q+SSCFL T+ DD + GI+G L++ A+++KY+GG+G + +R Sbjct: 231 HASPTLFNACTKNQQMSSCFLLTLNDDSIKGIYGTLKKCALISKYAGGIGINVHCIRAKD 290 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + G+I LK+ ND A+ V+QGG KR GA YLE WH D+ +FL+L++N G Sbjct: 291 TDDTYDTDATNGLISVLKLYNDIAIYVDQGGNKRPGAFAVYLEPWHADIFDFLELKRNIG 350 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D R D+ A W+PDLFM+RV + W+L P E L D++G EF Y YE++ Sbjct: 351 DGNLRARDLFYALWVPDLFMERVFDDEVWSLMCPYESPGLADVWGDEFNELYTRYEKE-- 408 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 G K R++ A +W +L ETG P++ +KD CN +S QH+G + SNLCTEI Sbjct: 409 -GRYK--RQVQARDVWVTILRSQVETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCTEIVE 465 Query: 591 NSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 SS EE AVCNL SI N+ + FD+DKL + ++ R LD VID+N + I + K+ Sbjct: 466 YSSPEEVAVCNLASIALNMFVNTNKKTFDFDKLKTVVKIVTRNLDKVIDVNFYPIPETKR 525 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 SN HR IG+G+ G A L+ P+ S EA E+ + E + + A+ AS ELA E+G Y Sbjct: 526 SNRRHRPIGIGVQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTY 585 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +++GS +G+ D + T WDELK ++ G+RNS +A P Sbjct: 586 ETYEGSPVSKGILQYDMWNV----------KPTDLWDWDELKTKIAKHGVRNSLLIAPMP 635 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TA+ A I G ++SI+ N+YV+ +SG+F ++N L+ +L R LW + M +++ + Sbjct: 636 TASTAQILGNNESIEAYTSNIYVRRVLSGEFVIINPHLLRDLTVRGLWGKDMQNEILANF 695 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 GS+ NIERIPDDLK+++ T +EI ++E A+ R +IDQ+QSLN+++ +PS +KL + Sbjct: 696 GSVQNIERIPDDLKELYKTVWEISQKVILEMAADRGAFIDQSQSLNIHIADPSTEKLTSM 755 Query: 889 YRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917 + W GLKT YYLR++ A +V+KS L+ Sbjct: 756 HFFGWRSGLKTGMYYLRTKPAANPIQFTVDKSKLQ 790 >gi|296217190|ref|XP_002754897.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 3 [Callithrix jacchus] Length = 711 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 256/623 (41%), Positives = 382/623 (61%), Gaps = 22/623 (3%) Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 L+ L Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PT Sbjct: 67 LKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPT 123 Query: 358 LFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 LFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I G Sbjct: 124 LFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAG 183 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 TNG S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R Sbjct: 184 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 243 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q + Sbjct: 244 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR-----R 298 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S + Sbjct: 299 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 358 Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR Sbjct: 359 EVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHR 418 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E G Y +++GS Sbjct: 419 PIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGS 478 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +G+ D + T W LK+++ G+RNS +A PTA+ A Sbjct: 479 PVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQ 528 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I Sbjct: 529 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSI 588 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 IPDDLK+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ W Sbjct: 589 PEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 648 Query: 895 MGLKT-TYYLRSRSATSVEKSTL 916 GLKT YYLR+R A + + TL Sbjct: 649 QGLKTGMYYLRTRPAANPIQFTL 671 >gi|335682|gb|AAA48274.1| Vaccinia virus matrix 1 protein Length = 771 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 281/761 (36%), Positives = 435/761 (57%), Gaps = 42/761 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL + + + + +Y+G++ +L+T + T + P+YA + AR Sbjct: 22 IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280 + L +E +K M+ L+ Y+ + G + ++ MD Y Sbjct: 82 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128 Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + YERDF++ Y G + L Y L IN +E PQ MRVA+G+ + + Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT Q+SSCFL + DD + GI+ L+ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G+IP L+V N+TA ++QGG KR G + YLE WH Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+L PDE L +++G Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y YER+ I I A +W+ ++ ETG P+I +KD CN +S QQ++ Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + SNLCTEI + + E AVCNLGS+ L + +FD+ KL ++ VR L+ +I Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLGSVALNMFVIDGRFDFLKLKVVVKVIVRNLNKII 480 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA +I + E I + A+ Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDINKKIFETIYYGALE 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA++ G Y ++ GS G+ D L V +L W+ LK +++T Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A P A I G ++S++P N+Y + +SG+F VVN L+ L +R LW Sbjct: 591 GLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + + GSI N +P+D+K+++ T +EI +I+ A+ R +IDQ+QS+N++ Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750 >gi|224372454|ref|YP_002606826.1| ribonucleotide-diphosphate reductase subunit alpha [Nautilia profundicola AmH] gi|223589714|gb|ACM93450.1| ribonucleoside-diphosphate reductase, alpha subunit [Nautilia profundicola AmH] Length = 812 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 300/842 (35%), Positives = 439/842 (52%), Gaps = 127/842 (15%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P + ++ +G + ++ + AC GL+ V + + DG++ ++++ L Sbjct: 3 PGITVIKRNGRREPLDISKIRKYTKAACEGLEGVDYTELELDAKLQFRDGITTAEIQDTL 62 Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ I+ PN+ V AR L L V +H EYF + E Sbjct: 63 IKTAVDKIDIDRPNWNYVAARLFLYDLYHRVTGFT------GYNH-----LKEYFQKGEE 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 G R+L FDL L LK ERD F YLG++ LYDRY + NG IE+PQ Sbjct: 112 AG---RILLGLKEKFDLDDLNAYLKPERDLQFTYLGIKTLYDRYIIKDRNGEPIELPQQL 168 Query: 321 FMRVAMGLALKETE-----KEKRA--------------VEFYNLLSSFHFMCSTPTLFNS 361 FM VAM LA ET +E+RA +FY+++S F M +TPTL N+ Sbjct: 169 FMGVAMFLAQNETNYESIPEEERANIPNDPKAIRGYWAKKFYDVISKFEVMVATPTLSNA 228 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T QLSSC++ ++ D++ GIF +E A+L+K+ GG+G D + +R LG+ I + Sbjct: 229 RTTRHQLSSCYVGSMNDNIEGIFDDFKEMALLSKFGGGIGWDVSRIRALGSFIDNHKNAA 288 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 GVIP+LK+ ND A+AV+Q G RKGA+ YLE WH+DV +FLDL+KN+G++RRR HD+ Sbjct: 289 GGVIPWLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDVLDFLDLKKNSGEERRRAHDLFP 348 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A WI DLFMKRV ++A WTLF P EV DL DLYG+EFE Y YE + + I Sbjct: 349 ALWISDLFMKRVQEDALWTLFDPYEVKDLTDLYGEEFEKRYIEYENDPNIAK----ETIK 404 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------- 593 A LW+K+L +ETG+P++ FKD N R+ H G++ SSNLCTEI N+ Sbjct: 405 AKELWKKILLEYYETGNPFLCFKDNANRRNQNDHAGIIRSSNLCTEIFQNTEPNHYKVKV 464 Query: 594 -----------SEETAVCNLGSINLL----------AHFANNQFDYDKLASTIRTAV--- 629 EE G + L A + +K+ +TAV Sbjct: 465 TFEDGSFNMYDEEEDVTVEHGDVKLTKKAKKITSIDAINGKQVYIVEKVPVNGKTAVCNL 524 Query: 630 ----------------------RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 R+LDNVID+N + + K K +N +RAIGLG MG L Sbjct: 525 ASVNLSKVNTPEKIKEVVPVAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQML 584 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 I + S E +++ DE E IS++AI S EL++E+G Y F+GS W +G+ PIDS Sbjct: 585 AEKQIFWGSEEHLKLIDEVFEGISYYAIKTSAELSEEKGIYPEFEGSRWSKGILPIDSAN 644 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 A+ E + + W+ L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ Sbjct: 645 EEAKRLVERDLFSAMQYDWEGLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPVYK 703 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + + N+SG VV + + + + Sbjct: 704 RKWYEENLSGLIPVV-------------------------------VPNLSAETYMFYTP 732 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+E+D L+++A+ RQKW+DQ QSLN+++ D+ SG+ L+ IY W +GLK+ YYLRS Sbjct: 733 AYELDQTVLVKAAAIRQKWVDQGQSLNIFITTDKASGRYLNEIYTLGWKLGLKSFYYLRS 792 Query: 906 RS 907 +S Sbjct: 793 QS 794 >gi|118346189|ref|XP_976850.1| Ribonucleotide reductase, barrel domain containing protein [Tetrahymena thermophila] gi|89288340|gb|EAR86328.1| Ribonucleotide reductase, barrel domain containing protein [Tetrahymena thermophila SB210] Length = 2928 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 275/749 (36%), Positives = 426/749 (56%), Gaps = 38/749 (5%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 V+ +++ + MYDG+ ++L+ ++ + P+Y+ AR + L +E ++ Sbjct: 2119 VNMDLIIQKVVNGMYDGIHTTELDELAAETAAYMTIIHPHYSLFAARIAVSNLHKETSSS 2178 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF---DLVYLANDLKYERDF 291 ++ + LY Y+++ G +A L+ + + + + + + Y+RD+ Sbjct: 2179 FFET--------ISALY-----NYVDKSGRQAGLIAKDVYEIVKENAEAIEKVINYDRDY 2225 Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +++ G + L Y L I+G E PQ MRV++G+ ++ E A YNL+S F Sbjct: 2226 TYDFFGFKTLERSYLLKIHGKIAERPQHMLMRVSIGIHKRDLES---AFRTYNLMSEKWF 2282 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPTLFNSGT PQ+SSCFL + D + GI+ L+++A+++K +GG+G +R Sbjct: 2283 THATPTLFNSGTPKPQMSSCFLLQMKGDSIEGIYDTLKQSALISKSAGGIGISVHNIRAR 2342 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNT 469 ++I GTNG S G++P L+V NDTA V+QGG KRKG+ YLE WH D+ EFL L+KN Sbjct: 2343 DSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIFEFLQLKKNH 2402 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + +R D+ A WIPDLFMKRV + WTL P+E L D++G EFE Y YE Sbjct: 2403 GKEEQRARDLFYALWIPDLFMKRVISDGTWTLMCPNECPGLPDVWGDEFEALYTKYE--- 2459 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 E K + I+A LW+ ++ ETG P++ +KD CN +S QQ++G + SSNLCTEI Sbjct: 2460 --NEGKGRKTINARELWQDIVDSQIETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEII 2517 Query: 590 LNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 +S +E AVCNL SI+L+ N ++DY KL + L+ VID N + + +AK Sbjct: 2518 EYTSPDEVAVCNLASISLVKFVKENGEYDYQKLYEISKVVTFNLNKVIDENYYPVIEAKN 2577 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 SN HR IG+G+ G A + I + S EA + ++ E I F A AS+E+A + G Y Sbjct: 2578 SNMRHRPIGIGVQGLADAFIKMRISFESDEAQIVNEKIFETIYFGACEASMEIAIKEGPY 2637 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +FKGS +G D L + L WD LK+++ GMRNS ++ P Sbjct: 2638 ETFKGSPASKGQLQFD----LWNYKPHLCG-----YDWDGLKQKIVEHGMRNSLLISPMP 2688 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TA+ + I G +S +P NLY + ++G+F +N LV +L +R+LW+ ++ + L + Sbjct: 2689 TASTSQILGNCESFEPYTSNLYTRRVLAGEFVCINPHLVQDLIERNLWNPSIKNQLLAFN 2748 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 GS+ + IPDD+K+++ T +E+ +I A R +IDQ+QSLN+++ +PS K+ + Sbjct: 2749 GSVSQVPDIPDDIKQLYKTVWEVSQKAIINLAVGRSPFIDQSQSLNIHISDPSYSKITSM 2808 Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + AW GLKT YYLRSR A K TL Sbjct: 2809 HFYAWEKGLKTGMYYLRSRPAADPIKFTL 2837 >gi|194389080|dbj|BAG61557.1| unnamed protein product [Homo sapiens] Length = 683 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 253/616 (41%), Positives = 380/616 (61%), Gaps = 22/616 (3%) Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 Y L ING E PQ MRV++G+ ++ + A+E YNLLS F ++PTLFN+GT Sbjct: 74 YLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTN 130 Query: 365 HPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG S G Sbjct: 131 RPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNG 190 Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 ++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A Sbjct: 191 LVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFA 250 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + + A Sbjct: 251 LWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKA 305 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL Sbjct: 306 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNL 365 Query: 603 GSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ Sbjct: 366 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQ 425 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ Sbjct: 426 GLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGIL 485 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D + T W LK+++ G+RNS +A PTA+ A I G ++S Sbjct: 486 QYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNES 535 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDL Sbjct: 536 IEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDL 595 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT Sbjct: 596 KQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGM 655 Query: 901 YYLRSRSATSVEKSTL 916 YYLR+R A + + TL Sbjct: 656 YYLRTRPAANPIQFTL 671 >gi|315452682|ref|YP_004072952.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter felis ATCC 49179] gi|315131734|emb|CBY82362.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter felis ATCC 49179] Length = 788 Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust. Identities = 309/829 (37%), Positives = 445/829 (53%), Gaps = 112/829 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ +G N ++++ + A GL+ ++ + E + DG+ D++ LI Sbjct: 6 EVRVIKRNGRTEPLNVEKIQKYIISATEGLEGINKDELELEAH-FFKDGIKTQDIQQTLI 64 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ PN++ V AR L L +V + K + Y E Sbjct: 65 KTAIDHIDVHAPNWSFVAARLFLFDLYHKVSGFMGYK---------------HLAEYFEV 109 Query: 263 GVK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAF 320 G + R++ FDL L + L+ +RD F YLG++ L+DRY L R IE+PQ Sbjct: 110 GEREGRIVRGFKEKFDLDRLNSALEPKRDLQFNYLGIKTLHDRYLLKDKQDRPIELPQHM 169 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E++ ++A+ FY +LS F MC+TPTL N+ T + QLSSC++ + PD++ Sbjct: 170 FMAIAMFLAQNESDPNEKALAFYEVLSRFEVMCATPTLANARTPNHQLSSCYVGSTPDNI 229 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + ++ A+L+KY GG+G D++ VR LG++I G S G IPFLK+ ND A+AV+Q Sbjct: 230 EGIFDSYKDMALLSKYGGGIGWDFSQVRCLGSYIDGHKEASAGAIPFLKIVNDVAIAVDQ 289 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH DV EF+DLRKN+GD+RRR HD+ A WI DLFM+RV ++ WT Sbjct: 290 LGTRKGAIAVYLEIWHKDVLEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEEDGMWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P SDL + YG F Y YE E + ++I A LW+K+LT FE+G P+ Sbjct: 350 LFDPYVCSDLTECYGDVFTQKYLAYENN----ENIIKQRIEARTLWKKILTNYFESGLPF 405 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEI--TLNSSSEETAVCNL-GSINLL--------- 608 + FKD N H G++ SSNLCTEI SS + AV + GS+ Sbjct: 406 LGFKDNANNAHLNGHTGLIRSSNLCTEIYQMTGSSHYKVAVEFVDGSLEYYEEKDLITTD 465 Query: 609 AHFANNQ--------------FDYDKLASTIRTAV------------------------- 629 AH F K+A + AV Sbjct: 466 AHITKKANKLTSNDSLKGKRIFMTTKIAQGGQVAVCNLASLNLSKVQSEADIARVVPIAV 525 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDN+ID+N + I+KAK++N RAIG G+MG AL I + S E D ME Sbjct: 526 RMLDNIIDLNFYPIDKAKRTNLQSRAIGFGVMGEAQALAQARIEWGSVEHAHYIDALMEK 585 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+ I S +LAQERG+Y+ F+ S W +G+FP+D A E++ ++ + W L Sbjct: 586 ISYTTILESCKLAQERGSYAHFENSEWSRGIFPMDKAKSQAW---EISPHKPT-CDWGGL 641 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K +VK G+RN MAIAPT++I+ + G +Q+I+P YQ + + N+SG VV V E Sbjct: 642 KAQVKQHGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVV----VPE 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L + W + +A++IDP +I A+ RQKWIDQ Sbjct: 698 L-SLETW--------------------------HYYTSAYDIDPKAIIRLAAVRQKWIDQ 730 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 QSLNL+L D+ SGK L IY AW +GLK+TYYLR+ S S+E L Sbjct: 731 GQSLNLFLRPDQASGKLLHEIYHLAWKLGLKSTYYLRTASP-SLETGAL 778 >gi|18640128|ref|NP_570202.1| SPV042 ribonucleotide reductase large chain [Swinepox virus] gi|18448535|gb|AAL69781.1| SPV042 ribonucleotide reductase large chain [Swinepox virus] Length = 757 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 272/769 (35%), Positives = 437/769 (56%), Gaps = 56/769 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTL---IEKEPNYAKVT 220 ++ C L + + + +E K +Y+ + D++T F+S + I + +Y + Sbjct: 22 IDNLCYDLDKNFIDANYLANEIIKGLYNNIRTKDIDT---FASELIAGFITRHYDYDTLA 78 Query: 221 ARFLLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 +R ++ KL +E V+ T+Y P H M EY + + + H Sbjct: 79 SRIVVSKLHKETTESFSDVIHTLYNYINPNNGNHLPM---VSEYLYQQVNK-------HR 128 Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK 331 ++D N + Y+RD+++ Y G++ L Y L N IE PQ MRV++G+ Sbjct: 129 DIID-------NVIAYDRDYSYSYFGIKTLEKSYLLKQNNKIIERPQHMLMRVSLGIHGG 181 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQEN 390 + + +E YN LS F+ ++PTLFN+GT PQ+SSCF+ + DD + GIF L++ Sbjct: 182 DIDD---VIETYNYLSEKWFIHASPTLFNAGTPLPQMSSCFILPIKDDSIEGIFDTLKQC 238 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVC 449 A+++K++GG+G + +R G +I G NGKS G++P L++ N+T +NQGG KR GA+ Sbjct: 239 ALISKHAGGIGLSISNIRAKGTYISGINGKSNGIVPMLRIYNNTVRYINQGGDKRPGAMS 298 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 Y+E WH D+ +FL LRKN G++ RT D+ TA W+PDLFM+RV ++ W+L P E Sbjct: 299 IYIEPWHADIFDFLSLRKNVGNEEYRTKDLFTALWVPDLFMERVEKDEEWSLMCPCECPG 358 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 L D++G +F Y YE + I R +LW+ ++ E G P+I +KD CN Sbjct: 359 LCDVWGNDFNKLYIEYETKKKIKAIVKAR-----SLWKSIIEAQIEQGTPYILYKDSCNK 413 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 +S Q ++G + SSNLCTEI S+ +E AVCNLGSI+L NN F +DKL + V Sbjct: 414 KSNQSNLGTIRSSNLCTEIIQFSNEDEVAVCNLGSISLSKFVNNNVFMFDKLRIITKILV 473 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + L+ +IDIN + + ++ +SN HR IG+G+ G LL + S EA + + E Sbjct: 474 KNLNKIIDINYYPVIESSRSNKKHRPIGIGVQGLADVFILLGYAFDSEEAKILNIQIFET 533 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I + A+ +S ELA+ G Y ++ S +G+ D N T W+EL Sbjct: 534 IYYAALESSCELAKIYGPYETYNDSPASKGILQYDM----------WLKNPTDLWDWNEL 583 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 KKR+ T G+RNS +A PTA+ + I ++SI+P N+Y + +SGDF VVN L+ E Sbjct: 584 KKRINTHGLRNSLLIAPMPTASTSQILSNNESIEPYTSNIYTRRVLSGDFQVVNPHLLRE 643 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L R++W+ + + + H+GSI +++ +PD++K+I+ T +EI ++E A+ R +IDQ Sbjct: 644 LISRNMWNNDIKNTIVLHNGSIQHLD-LPDNIKQIYKTVWEISQKCILEMAADRGAFIDQ 702 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 +QS+ +Y+D P+ KL ++ W +GLKT YY+R++SA++ K T++ Sbjct: 703 SQSMTIYIDNPTYAKLTSMHFYGWRLGLKTGMYYMRTKSASNPIKFTVE 751 >gi|187903102|ref|YP_001883393.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca domestica salivary gland hypertrophy virus] gi|187384751|gb|ACD03524.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca domestica salivary gland hypertrophy virus] Length = 785 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 272/772 (35%), Positives = 429/772 (55%), Gaps = 64/772 (8%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +E C L V ++ + +Y G++ ++L+T ++ +++ P+Y + AR Sbjct: 29 IESLCYNLNADYVHPSTIVVKVVAGLYPGVTTAELDTLAAETAASMMTLHPDYGVLAARI 88 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---- 279 + + ++ + F R ++E A L+ SM +D+V Sbjct: 89 AISNMHKQT--------------------DDSFARTMKELYAAGLI--SMFHYDVVCRHG 126 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + DF + Y G++ L Y +HI +E PQ MR A+G+ E Sbjct: 127 RTLDEAIVHANDFNYSYFGIKTLERSYLMHIKDRLVERPQYLLMRCALGI---HGENIDA 183 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 +E YN +S +F +TPTLF++ T PQLSSC+L T+ D + GIF + + A ++K + Sbjct: 184 VIETYNYMSRHYFTHATPTLFSAATPKPQLSSCYLLTIKGDSIDGIFRTVADCAAISKTA 243 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G+ I GTNGKS G++P L+V N+ A V+QGG KR G+ YLE WH Sbjct: 244 GGIGLNVHDIRARGSPIDGTNGKSNGLVPMLRVFNNVARYVDQGGGKRMGSFAIYLEPWH 303 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EFLDLRKN G + +R D+ A WIPDLFM+RV Q+ W+L P + L +++G+ Sbjct: 304 ADIFEFLDLRKNHGIEEQRARDLFYALWIPDLFMRRVEQDGDWSLMCPHKCPCLSEVWGE 363 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 FE YE+YER+ + R + A ALW ++ ETG P++ +KD CN +S QQ++ Sbjct: 364 SFEHLYEHYERKG-----RAVRTVKARALWHAIIESQVETGTPYMMYKDACNRKSNQQNL 418 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDKLASTIRTAVR 630 G + SNLCTEI ++ +E AVCNL S+ L + FD+++L + R Sbjct: 419 GTIRCSNLCTEIVEYTAPDEIAVCNLASLALPKFVVSGTPDRPKHFDFEQLRRIVHVVTR 478 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +IDIN + + +A++SN HR IG+G+ G L+ +PY S EA E+ E I Sbjct: 479 NLNRIIDINYYPVPEARRSNLRHRPIGIGVQGLADTFVLMGMPYESDEARELNRRIFETI 538 Query: 691 SFHAISASVELAQERGAYSSFKGS-----LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 F A+ S +LA+E G Y SF GS Q ++P+D V D+ N Sbjct: 539 YFAALETSCQLAKEEGVYDSFLGSPASIGTLQQDMWPVD-------VDDKPMWN------ 585 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WDEL+ ++ G+RNS +A PTA+ A I G ++S +P N+YV+ +SG+F V+N Sbjct: 586 WDELRHNIEMNGLRNSLLVAPMPTASTAQILGNTESFEPITSNIYVRRVLSGEFQVINRH 645 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV L LW E+M + + GS+ +IE IP ++++++ T +EI +I+ A+ R + Sbjct: 646 LVQHLIDLGLWSESMRNRIIARRGSVQDIEEIPIEVRRLYKTVWEISGRRIIDMAADRGR 705 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +IDQ+QSLN+++ EP+ KL ++ AW GLKT YYLR+++A + + T+ Sbjct: 706 YIDQSQSLNMHVAEPNYAKLSSMHFYAWRAGLKTGMYYLRTKAAANAIQFTV 757 >gi|281204858|gb|EFA79053.1| ribonucleotide reductase large subunit [Polysphondylium pallidum PN500] Length = 868 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 282/791 (35%), Positives = 432/791 (54%), Gaps = 45/791 (5%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-----VLSETYKNM 189 SK + K+ ++ DGT S ++ ++ C ++ ++ V + + Sbjct: 11 SKEQSTPNSKMYVIKRDGTKASVQYDKITQRLQSLCDLEPKLNGEVIDPSEVTQKVASGV 70 Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + G+ ++L+ ++ + K P+Y + AR + L ++ ++ + +K Sbjct: 71 FPGVKTTELDNLAAETAAYMSTKHPDYGVLAARISVSNLHKQTSSSFLETVEK------- 123 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYF 306 ++ + G A L+ + + + ++ L + Y RDF +++ G + L Y Sbjct: 124 ----QHSFTNPKTGQPAPLVSDELYNLVKIHHKRLEEAIDYRRDFEYDFFGFKTLERSYL 179 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 IN IE PQ MRV++G+ + + A+E YNLLS F +TPTLFNSGT P Sbjct: 180 HRINDIIIERPQQMLMRVSIGIHGDDIDS---AIETYNLLSQRLFTHATPTLFNSGTPSP 236 Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 Q+SSCFL + +D + GI+ L++ A+++K +GG+G +R ++I GTNG S G++ Sbjct: 237 QMSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTNGTSNGLV 296 Query: 426 PFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + R D+ A W Sbjct: 297 PMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALW 356 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + DLFM+RV + W LF P+E L D +G EF YE YE R I A Sbjct: 357 VSDLFMERVENDDVWNLFCPNEAPGLADCWGDEFRALYEKYENTPGLSR----RTIKAQD 412 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LW ++ ETG P+ +KD CN +S QQ++G + SNLCTEI +S++E AVCNL S Sbjct: 413 LWFTIIESQIETGTPYFLYKDACNSKSNQQNLGTIQCSNLCTEIIQYTSADEVAVCNLAS 472 Query: 605 INLLAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 I L + N +FD+ L +T R L+ +ID N + + +A+ SN HR IG+ Sbjct: 473 IALPKYVRENKETGKPEFDHQYLFEVTKTITRNLNKIIDRNYYPVLEARNSNFRHRPIGI 532 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G L +P+ S A + E E I F A++AS ELA+ G Y SFKGS + Sbjct: 533 GIQGLADVFIRLRLPFESNGAAILNKEIAETIYFAALTASAELAERDGPYESFKGSPASK 592 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G +D + + R W LK+++ + G+RNS +A PTA+ + I G Sbjct: 593 GTLQ----------QDFWNVTPSPRWDWTSLKQKIISTGLRNSLLIAPMPTASTSQILGN 642 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 +++ +P N+Y + ++G+FTVVN L+ +L DLW M + + H GSI NIE IP Sbjct: 643 NEAFEPYTSNIYSRRVLAGEFTVVNKQLLQDLMDLDLWTPEMKNQIIAHRGSIQNIEDIP 702 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DDLK+++ T +EI LI+ A+ R +IDQ+QS N+++ EP+ +KL ++ AW GLK Sbjct: 703 DDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFQKLTSMHFYAWKKGLK 762 Query: 899 T-TYYLRSRSA 908 T YYLR+R+A Sbjct: 763 TGMYYLRTRAA 773 >gi|209878422|ref|XP_002140652.1| ribonucleoside-diphosphate reductase, large subunit [Cryptosporidium muris RN66] gi|209556258|gb|EEA06303.1| ribonucleoside-diphosphate reductase, large subunit, putative [Cryptosporidium muris RN66] Length = 809 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/736 (37%), Positives = 428/736 (58%), Gaps = 37/736 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ S+L+ + + P+++K+ AR + L K TH ++ Sbjct: 50 MYSGIKTSELDELASQTCAYMAASHPDFSKLAARISISNL------------HKNTHSDI 97 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRY 305 + + G A LL +++ +F + L + + + RDF ++Y + L Y Sbjct: 98 FEVANQLISFKDVHGNPAPLLSQTVYEFIIENKDRLNSVIDFSRDFEYDYFAFKTLERSY 157 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L ++ +E PQ MRV+ G+ + A+E Y LLS +F +TPTLFN+GT Sbjct: 158 LLRVDDKIVERPQHLLMRVSCGIHYGNIDA---AIETYELLSQKYFTHATPTLFNAGTLR 214 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCF+ + DD + GIF L++ A ++K +GGLG + +R G++I GTNG+S G+ Sbjct: 215 PQMSSCFILKMSDDSIDGIFDTLKKCANISKTAGGLGVAISNIRAAGSYIRGTNGRSNGL 274 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 IP L+V NDTA V+QGG KRKGA+ YLE WH D+ EF+++RKN G + R D+ A Sbjct: 275 IPMLRVYNDTARYVDQGGGKRKGALAVYLEPWHADILEFIEIRKNHGKEEMRCRDIFPAL 334 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFM+RV ++A WTL PDE + D++G +F+ YE+YE++ RG + I A Sbjct: 335 WIPDLFMERVEKDANWTLMCPDECPGMQDVWGDQFKELYEHYEKEG-RGR----KTIKAQ 389 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +LW +L ETG P+I +KD N +S QQ++G + SSNLCTEI +SS+E AVCNL Sbjct: 390 SLWFALLQSQIETGTPFICYKDAANRKSNQQNLGTIKSSNLCTEIMEYTSSDEVAVCNLA 449 Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L N +FD+ KL ++ A+R L+ VID + I + ++SN HR +GLG+ Sbjct: 450 SIGLPRFVDRENKKFDFKKLYEVVKVAIRNLNKVIDRGYYPIPECRRSNLRHRPLGLGVQ 509 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G +L PY S +A ++ E E I + A+ AS ELA++ G Y +F+GS +G+ Sbjct: 510 GLADCFMILRYPYESKDARKLNIEIFETIYYAALDASCELAEKYGPYETFQGSPASRGLL 569 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D L V+ + WD LK+++ G+RNS +A PTA+ + + G ++S Sbjct: 570 QFD----LWNVQPSSGL-----WNWDLLKEKIAKYGLRNSLLVAPMPTASTSQLLGNNES 620 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+N+L + LWDE + ++ ++GS+ NIE IP D+ Sbjct: 621 FEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGLWDERLKQNIIANNGSVQNIESIPRDI 680 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 + ++ T +EI +I+ A+ R +I Q+QSLN+Y+ + KL ++ W GLKT + Sbjct: 681 RDLYKTVWEIRQKAVIDMAADRGPYICQSQSLNIYIANANYAKLSSMHFYGWKKGLKTGS 740 Query: 901 YYLRSRSATSVEKSTL 916 YYLR++SA + + T+ Sbjct: 741 YYLRTQSAANPIQFTI 756 >gi|323454028|gb|EGB09899.1| hypothetical protein AURANDRAFT_24558 [Aureococcus anophagefferens] Length = 787 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 273/771 (35%), Positives = 426/771 (55%), Gaps = 35/771 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++++ +G + ++ +++ C GL + + + + + +YDG++ +L+ Sbjct: 1 MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + + P+++ + AR + L + T +K H M + +E Sbjct: 61 AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK-LHKHMHPKTKKPAALISDE 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 H+ ++ +VY +RDF ++Y G + L Y + ++G+ E PQ M Sbjct: 120 TYATVQKHKDAINAAIVY-------DRDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + A E Y ++S F +TPTLFN+GT PQLSSCFL + +D + Sbjct: 173 RVALGI---HGDDLAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G +RKG+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV N W+ Sbjct: 290 GGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D +G EFE YE YE E + + I A LW +L ETG P+ Sbjct: 350 LMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLWFAILDSQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616 + +KD CN +S Q+H+G + SSNLCTEI ++S+E AVC L SINL H F Sbjct: 405 MLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATF 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL T + L+ V+D+N + +E+AK SN HR +G+G+ G AL L PY S Sbjct: 465 DFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYES 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A I + E I F A+ AS++LAQE G Y S+ GS QG+F D L V+ Sbjct: 525 DDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFD----LWNVKP-- 578 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + R W+ L+ R+ G RNS +A PTA+ A I G ++S +P N++ + ++ Sbjct: 579 ----SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMFTRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L LW + + + GS+ + IPDDLK ++ T +EI + Sbjct: 635 GEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCV 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 ++ ++ R +I Q+QSLNL++ +P+ KL ++ AW GLKT YYLR+R Sbjct: 695 LDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTR 745 >gi|169603614|ref|XP_001795228.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15] gi|111066086|gb|EAT87206.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15] Length = 903 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 280/783 (35%), Positives = 438/783 (55%), Gaps = 56/783 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPDHVDPAAITMKVISGVYHGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81 Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ V++ +Y P+ + Q + +Y + I++ H + Sbjct: 82 AVSNLHKQTKKQFSAVVSDLYTYVNPKNG---KSQPMISDYIYKIIQD-------HAEEL 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 + +VY +RDF +++ G + L Y L ING E PQ MRVA+G+ ++ E Sbjct: 132 NSAIVY-------DRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGEDIE 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 K A+E Y+ +S +F ++PTLFN+GT +PQ+SSCFL + +D + GI+ L+ A++ Sbjct: 185 K---AIETYDYMSQKYFTHASPTLFNAGTPNPQMSSCFLIDMKEDSIDGIYDTLKTCALI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YL Sbjct: 242 SKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV FLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Sbjct: 302 EPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 +YG EFE Y YER E K + A LW +L ETG+P++ +KD CN +S Sbjct: 362 VYGDEFEELYTRYER-----ENKGRETVRAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI ++ +E AVCNL S+ L + +FD+ KL R Sbjct: 417 QKNLGTIRSSNLCTEIVEFTAPDEVAVCNLASLALPSFVDYKRGEFDFHKLHEVTMVVTR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +I++N + +E+A++SN HR IGLG+ G A L +P+ SPEA ++ + E I Sbjct: 477 NLNKIIEVNHYPVEEARRSNFRHRPIGLGVQGLADAFLALRLPFESPEAKKLNTQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+++S ++A+E G Y++++GS +G D G+ + W LK Sbjct: 537 YHAALTSSCDIAKELGPYATYEGSPVSKGQLQYDLWGVTP----------SDLWDWASLK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 DKIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW E M + + GSI I IP++ K ++ T +EI +I+ A+ R +IDQ+ Sbjct: 647 VDMGLWSENMKNRIIADGGSIQRIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QSLN+++ EP+ K+ ++ W +GLKT YYLR+ +A++ + T VD + A+ VT Sbjct: 707 QSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT---VDQE--ALQVT 761 Query: 930 DPN 932 D N Sbjct: 762 DTN 764 >gi|147775539|emb|CAN71697.1| hypothetical protein VITISV_003192 [Vitis vinifera] Length = 791 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/800 (35%), Positives = 429/800 (53%), Gaps = 74/800 (9%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L+ ++ + P+YA + AR V++ ++K Sbjct: 38 LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y + R G+KA L+ + + + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETIKEMYNHFNER---SGLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L I G +E PQ MRV++G+ + + A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKIQGKVVERPQHMLMRVSVGIHKDDIDS---AIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L+E A+++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A W+PDLFM+RV N W+LF P E L D +G+EF Y YER+ Sbjct: 324 RARDLFYALWVPDLFMERVQSNGHWSLFCPXEAPGLADCWGQEFVDLYTQYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K + + A LW ++L ETG P++ FKD CN +S QQ++G + SSNLCTEI +S+ Sbjct: 379 KAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSA 438 Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634 +ETAVCNL SI L + N FD+DKLA L+ Sbjct: 439 DETAVCNLASIALPRYVREKGVPMESNPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNK 498 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID+N + + G LL + + SPEA ++ + E I +HA Sbjct: 499 IIDVNYYPFQ-----------------GLADTFILLGMAFDSPEAQQLNKDIFETIYYHA 541 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA G Y ++ G +G+ D G+ +SR WD L+K + Sbjct: 542 LKASCELAMREGPYETYDGCPVSKGILQPDMWGVTP----------SSRWDWDALRKMIS 591 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+++L + Sbjct: 592 ENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 651 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW + + + Y +GS+ + IP+DLK I+ T +EI L++ A R +IDQ+QSLN Sbjct: 652 LWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLN 711 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 +++D+P+ KL ++ AW GLKT YYLRSR+A K T+ L T + Sbjct: 712 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSILQERTKTADDD 769 Query: 934 STHSLGIPSSCTSDTECEVC 953 T + S T+ EC C Sbjct: 770 DTKMAQMVCSLTNREECMAC 789 >gi|18266787|sp|O61065|RIR1_CRYPV RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase R1 subunit gi|8365757|gb|AAC12280.2| ribonucleotide reductase R1 subunit [Cryptosporidium parvum] gi|32398776|emb|CAD98486.1| ribonucleoside-diphosphate reductase large chain [Cryptosporidium parvum] Length = 803 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 267/729 (36%), Positives = 422/729 (57%), Gaps = 37/729 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G+ S+L+ + + +++K+ AR L K T ++ Sbjct: 46 LYSGIKTSELDELASQTCAYMAATHNDFSKLAARISTSNL------------HKNTSSDI 93 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + + +G A L+ + + DF + + + + + +DF ++Y + L Y Sbjct: 94 GDVASQLYNFKDNQGCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSY 153 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L I+ +E PQ MRV+ G+ + E A+E Y LLS +F +TPTLFNSGT Sbjct: 154 LLKIDNKVVERPQHLLMRVSCGIHCGDIEA---ALETYELLSQKYFTHATPTLFNSGTPR 210 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL +P+D + GIF L + A ++K +GGLG + +RG G++I GTNG+S G+ Sbjct: 211 PQMSSCFLLRIPEDSINGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGL 270 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 IP L+V NDTA ++QGG KRKGA+ YLE WH+DV EF+++RKN G + R D+ A Sbjct: 271 IPMLRVYNDTARYIDQGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPAL 330 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFM+RV ++ WTL PDE L D++G +F+ YE YE+Q RG + + A Sbjct: 331 WVPDLFMERVEKDQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQG-RGR----KTMKAQ 385 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P+I +KD N +S Q+++G + SSNLCTEI +S++E AVCNL Sbjct: 386 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLA 445 Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L N FD+DKL + R L+ +ID+ +++++ KKSN HR +G+G+ Sbjct: 446 SIGLPKFVDKNNKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQ 505 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G +L +PY S A ++ + E I + A+ AS ELA++ G Y ++ GS +G+ Sbjct: 506 GLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGIL 565 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D G+ + + WD LK R+ G+RNS ++ PTA+ + I G ++S Sbjct: 566 QFDMWGVTPD---------SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNES 616 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+N+L + LWD+ + ++ ++GSI NI IP+D+ Sbjct: 617 FEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDI 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 ++++ T +EI +I+ A+ R ++ Q+QSLN++++ + KL ++ W GLKT Sbjct: 677 RELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGI 736 Query: 901 YYLRSRSAT 909 YYLR++SAT Sbjct: 737 YYLRTQSAT 745 >gi|66475480|ref|XP_627556.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal PFL-like glycyl radical enzymes-like fold [Cryptosporidium parvum Iowa II] gi|46229284|gb|EAK90133.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal PFL-like glycyl radical enzymes-like fold [Cryptosporidium parvum Iowa II] Length = 804 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 267/729 (36%), Positives = 422/729 (57%), Gaps = 37/729 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G+ S+L+ + + +++K+ AR L K T ++ Sbjct: 47 LYSGIKTSELDELASQTCAYMAATHNDFSKLAARISTSNL------------HKNTSSDI 94 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + + +G A L+ + + DF + + + + + +DF ++Y + L Y Sbjct: 95 GDVASQLYNFKDNQGCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSY 154 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L I+ +E PQ MRV+ G+ + E A+E Y LLS +F +TPTLFNSGT Sbjct: 155 LLKIDNKVVERPQHLLMRVSCGIHCGDIEA---ALETYELLSQKYFTHATPTLFNSGTPR 211 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL +P+D + GIF L + A ++K +GGLG + +RG G++I GTNG+S G+ Sbjct: 212 PQMSSCFLLRIPEDSINGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGL 271 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 IP L+V NDTA ++QGG KRKGA+ YLE WH+DV EF+++RKN G + R D+ A Sbjct: 272 IPMLRVYNDTARYIDQGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPAL 331 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLFM+RV ++ WTL PDE L D++G +F+ YE YE+Q RG + + A Sbjct: 332 WVPDLFMERVEKDQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQG-RGR----KTMKAQ 386 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG P+I +KD N +S Q+++G + SSNLCTEI +S++E AVCNL Sbjct: 387 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLA 446 Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L N FD+DKL + R L+ +ID+ +++++ KKSN HR +G+G+ Sbjct: 447 SIGLPKFVDKNNKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQ 506 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G +L +PY S A ++ + E I + A+ AS ELA++ G Y ++ GS +G+ Sbjct: 507 GLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGIL 566 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D G+ + + WD LK R+ G+RNS ++ PTA+ + I G ++S Sbjct: 567 QFDMWGVTPD---------SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNES 617 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+N+L + LWD+ + ++ ++GSI NI IP+D+ Sbjct: 618 FEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDI 677 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 ++++ T +EI +I+ A+ R ++ Q+QSLN++++ + KL ++ W GLKT Sbjct: 678 RELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGI 737 Query: 901 YYLRSRSAT 909 YYLR++SAT Sbjct: 738 YYLRTQSAT 746 >gi|320581724|gb|EFW95943.1| ribonucleotide reductase large subunit Rnr1 [Pichia angusta DL-1] Length = 816 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 276/750 (36%), Positives = 425/750 (56%), Gaps = 37/750 (4%) Query: 176 VSSKIVLSETYKNMYDGLSESDLE--TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 VS ++L + + + L+ +L TA + +S T + + +Y + AR L+ L+++V Sbjct: 41 VSIDVILDKVVSGLPESLTVQELLDLTAEVSASLTTVHYDHSY--LAARVLVRHLQKQVC 98 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293 + + + M+ P + + + + A +HE +++ L + ++RD Sbjct: 99 GSFSENVNR-----MRQYRPSQYRSF--KSLIAADVHE-IVNKHADVLNKAIDFDRDLEL 150 Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 +Y G + + Y L ++G E PQ FMRVA+G+ E R +E Y L+S +F+ Sbjct: 151 DYFGFRTMERSYLLKMDGRPCETPQYLFMRVAVGIHKGNIE---RVLETYRLMSQKYFIH 207 Query: 354 STPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTLFN+GT P LSSCFL + D + GIF + ++A+++K +GG+G + +R G+ Sbjct: 208 ASPTLFNAGTETPNLSSCFLLAMDGDSINGIFRTIHKSALISKAAGGIGIHVSNIRAAGS 267 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G++P ++V N TA V+QGG KR GA C YLE WH DV EFLDLRKN G Sbjct: 268 YISGTNGTSNGLVPMVQVFNSTAKYVDQGGNKRPGAFCMYLEPWHADVFEFLDLRKNHGK 327 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + R D+ A WIPDLFM++V ++ W LFS D+ L D YG EF Y YER+ Sbjct: 328 EETRARDLFYALWIPDLFMEKVEKDQEWCLFSEDQSPGLSDSYGDEFVKLYNRYEREG-- 385 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 + RK+ A LW +L ETG+P++ +KD CN +S QQ++G + SSNLC EI Sbjct: 386 ---RYIRKVRAQKLWHAILVAQTETGNPFLLYKDACNKKSNQQNLGTIKSSNLCCEIVEY 442 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 SS+EETAVCNLGS+ L + +N+ FD+ L +T R LD VID+ + + +A+ Sbjct: 443 SSNEETAVCNLGSLALPSFVHDNKGERKFDFKFLHDVCKTLARNLDTVIDVGSYPLPEAE 502 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 SN HR I +G+ G L +P+ SPE+ ++ E I A+ S ELA+ G Sbjct: 503 VSNKRHRPIAIGVQGLADVFFKLRMPFGSPESRKLNILIFETIYHAALETSAELAEIYGP 562 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y S+ GS +GV D + W+ LK ++ G+RNS +A+ Sbjct: 563 YDSYAGSPISKGVLQYDFWN----------AKPSDMWDWEGLKAKIHRNGVRNSLLVALM 612 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PTA+ + I G ++ +P N+Y + +SG+F VVN +L+++L LW M +++ Sbjct: 613 PTASTSQIFGFTECFEPITSNMYSRRVLSGEFQVVNRYLIDDLVDLGLWGPEMKNEILRM 672 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 +GS+ IE IP D K+I+ T +EI LI+ A+ R +IDQ+QS+NL++ P+ KL Sbjct: 673 EGSVQAIESIPADTKEIYKTVWEIQQRALIDMAADRAPFIDQSQSMNLFMRNPTMSKLTS 732 Query: 888 IYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ AW GLKT YYLR+++A S K T+ Sbjct: 733 MHFYAWKKGLKTGIYYLRTQAAASAIKFTV 762 >gi|330929115|ref|XP_003302526.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1] gi|311322081|gb|EFQ89385.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1] Length = 889 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 274/784 (34%), Positives = 433/784 (55%), Gaps = 57/784 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81 Query: 224 LLEKLRREVLTT---------VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ Y P+ + Q + ++ + I++ H + Sbjct: 82 AVSNLHKQTKKQFSAVVEDLYTYVNPKNG---KSQPMISDHVYKIIQD-------HAEEL 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 + +VY +RDF +++ G + L Y L ING E PQ MRVA+G+ E Sbjct: 132 NSAIVY-------DRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGI---HGE 181 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 +A+E Y+ +S +F ++PTLFN+GT PQ+SSCFL + +D + GI+ L+ A++ Sbjct: 182 DIPKAIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSIDGIYDTLKTCALI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YL Sbjct: 242 SKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV FLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Sbjct: 302 EPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 +YG EFE YE+YE+Q ++G + A LW +L ETG+P++ +KD CN +S Sbjct: 362 VYGDEFEALYESYEKQ-NKGR----ETVRAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI ++ +E AVCNL S+ L + +FD+ KL + R Sbjct: 417 QKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQVVTR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +I++N + +E+A++SN HR IG+G+ G A L +P+ S EA ++ + E I Sbjct: 477 NLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEEAKKLNIQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+++S ++A+E G Y +++GS QG+ D + T W LK Sbjct: 537 YHAALTSSCDIAKELGPYQTYEGSPVSQGILQYDMWNVTP----------TDLWDWASLK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 AKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW E M + + GSI I IP++ K ++ T +EI +I+ A+ R +IDQ+ Sbjct: 647 VDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL- 923 QSLN+++ EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D + Sbjct: 707 QSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNIA 766 Query: 924 NAVP 927 A+P Sbjct: 767 KALP 770 >gi|189196218|ref|XP_001934447.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187980326|gb|EDU46952.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 795 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 274/776 (35%), Positives = 431/776 (55%), Gaps = 56/776 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL V + + +Y G++ L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81 Query: 224 LLEKLRREV---LTTV------YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L ++ + V Y P+ + Q + ++ + I++ H + Sbjct: 82 AVSNLHKQTKKQFSAVVEDLYSYVNPKNG---KSQPMISDHVYKVIQD-------HAEEL 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 + +VY +RDF +++ G + L Y L ING E PQ MRVA+G+ E Sbjct: 132 NSAIVY-------DRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGI---HGE 181 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 +A+E Y+ +S +F ++PTLFN+GT PQ+SSCFL + +D + GI+ L+ A++ Sbjct: 182 DIPKAIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSIDGIYDTLKTCALI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YL Sbjct: 242 SKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH DV FLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E L D Sbjct: 302 EPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLAD 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 +YG EFE YE+YE+Q ++G + A LW +L ETG+P++ +KD CN +S Sbjct: 362 VYGDEFEALYESYEKQ-NKGR----ETVRAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630 Q+++G + SSNLCTEI ++ +E AVCNL S+ L + +FD+ KL + R Sbjct: 417 QKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQVVTR 476 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ +I++N + +E+A++SN HR IG+G+ G A L +P+ S EA ++ + E I Sbjct: 477 NLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEEAKKLNIQIFETI 536 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+++S E+A+E G Y +++GS QG+ D + T W LK Sbjct: 537 YHAALTSSCEIAKELGPYQTYEGSPVSQGILQYDMWNVTP----------TDLWDWASLK 586 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L Sbjct: 587 AKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW E M + + GSI I IP++ K ++ T +EI +I+ A+ R +IDQ+ Sbjct: 647 VDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQS 706 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 QSLN+++ EP+ K+ ++ W +GLKT YYLR+ +A+ +V++ LK D Sbjct: 707 QSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762 >gi|320582719|gb|EFW96936.1| Ribonucleoside-diphosphate reductase large chain 1 [Pichia angusta DL-1] Length = 862 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 270/781 (34%), Positives = 430/781 (55%), Gaps = 35/781 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ V C GL + V + +Y G++ +L+ Sbjct: 1 MYVLKRDGRKEPVRFDKITARVSRLCYGLDPEHVEPVAITQRVISGVYHGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ T + + +H + + +E Sbjct: 61 AETAAYMTTIHPDYATLAARIAISNLHKQT-TKQFSQVVDQLYHYINPKNGKPSPMISDE 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + H ++ +VY +RDF++ Y G + L Y L I+G E PQ M Sbjct: 120 TYRIVQEHADELNSAIVY-------DRDFSYNYFGFKTLERSYLLKIDGKVAERPQHMVM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + +E YNL+S F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 173 RVAIGI---HGDDIPSVIETYNLMSQKFFTHASPTLFNAGTPHPQMSSCFLVAMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKAAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KR GA Y+E WH D+ +F+D+RKN G + R D+ A WIPDLFM+RV QNA WT Sbjct: 290 GNKRPGAFALYVEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEQNAEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L D+YG EF+ Y YE++ RG + + A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLADVYGDEFKELYTRYEKEG-RGR----QTVKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----F 616 + +KD CN ++ Q+++G++ SSNLC EI SS EE AVCNL SI L A ++ + Sbjct: 405 MLYKDACNSKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPAFVESDDNTSWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +++KL + + L+ +ID N + + +A++SN +R I +G+ G L +P+ S Sbjct: 465 NFEKLHQITKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIAVGVQGLADVFMQLRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA E+ + E I A+ AS ELA G Y +F+GS QG+ D G Sbjct: 525 PEARELNIQIFETIYHGALEASAELAVRDGKYETFEGSPASQGILQFDLWG--------- 575 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T WD LK R++ G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 576 -KKPTDLWDWDSLKARIQKDGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L LW+++M + + +GS+ N+ +P +LK ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVNLGLWNDSMKNFIIKDNGSVQNLPNVPQELKDLYRTVWEIPQKSI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QS+N++L P+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRGAYIDQSQSMNIHLKNPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 L 916 + Sbjct: 755 V 755 >gi|164659252|ref|XP_001730750.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966] gi|159104648|gb|EDP43536.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966] Length = 850 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 277/746 (37%), Positives = 416/746 (55%), Gaps = 55/746 (7%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV---------YKK 239 +Y+G++ +L+ ++ P+YA + AR + L +E + Y Sbjct: 17 IYEGVTTVELDNLAAETAAYKTTTHPDYAVLAARIAISNLHKETKKSFSQVIQDLHDYVN 76 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 P+ M EE + H ++D ++Y ERDF + + G + Sbjct: 77 PKTGRPSSMIS----------EETFNTVMKHRELLDSAIIY-------ERDFHYNFFGFK 119 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 L Y L ING E PQ MRVA+G+ ++ E A+E YN +S F ++PTLF Sbjct: 120 TLERSYLLRINGKVAERPQHMLMRVAVGIHGEDIES---AIETYNYMSEKAFTHASPTLF 176 Query: 360 NSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N+GT +PQ+SSCFL ++ +D + GI+ L+ AM++K +GG+G + +RG G++I GTN Sbjct: 177 NAGTPNPQMSSCFLVSMKEDSIEGIYDTLKTCAMISKTAGGIGLNIHNIRGTGSYIAGTN 236 Query: 419 GKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G S G++P L+V N+TA V+QGG KR GA YLE WH DV EF+DLRKN G D R Sbjct: 237 GVSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHPDVFEFVDLRKNHGKDEVRAR 296 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 D+ A W+PDLFMKRV +N W+L P E L D YG+EFE YE YER+ + Sbjct: 297 DLFLAMWVPDLFMKRVEKNEDWSLMCPAEAPGLADCYGEEFEELYERYEREG-----RAK 351 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 R + A LW +L ETG+P++ +KD N +S Q+++G + SSNLCTEI SS EET Sbjct: 352 RSVKAQKLWYAILEAQIETGNPFMLYKDAANRKSNQKNLGTIKSSNLCTEIMEYSSPEET 411 Query: 598 AVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 AVCNL SI L A+ +++ +L + + L+ +IDIN + + A++SN H Sbjct: 412 AVCNLASIALPTFIEGTGASKIYNFQRLHDVAKVVCKNLNRIIDINYYPVPSARRSNMRH 471 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G+ G A ++ P+ S EA + + E I A+ S ELA++ G Y +++G Sbjct: 472 RPIGIGVQGLADAFMIMGYPFDSQEARRLNLQIFETIYHAALERSCELAEQYGTYETYQG 531 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELKKRVKTIGMRNSNCMAIAPTAT 771 S QG+ D NRT WD LK ++ G+RNS +A PTA+ Sbjct: 532 SPASQGILQYD------------MWNRTPTDLWDWASLKAKIAQHGLRNSLLLAPMPTAS 579 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G ++ +P N+Y++ ++G+F VVN +L+ EL + LW+++M + H GSI Sbjct: 580 TSQILGFNECFEPYTNNIYMRRVLAGEFQVVNPWLLRELVELGLWNDSMKQKIIAHGGSI 639 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 NI IPD +K ++ T +EI +I+ A+ R ++ Q+QSLN++L PS +L ++ Sbjct: 640 QNIPGIPDHIKALYKTVWEISQKVIIDMAADRGAFVCQSQSLNIHLSAPSFGQLTSMHFY 699 Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTL 916 W GLKT +YYLR+R A S + T+ Sbjct: 700 GWKKGLKTGSYYLRTRPAASAIQFTV 725 >gi|325190738|emb|CCA25231.1| ribonucleosidediphosphate reductase large subunit p [Albugo laibachii Nc14] Length = 782 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 276/772 (35%), Positives = 427/772 (55%), Gaps = 45/772 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ S+L+ ++ + P+++K+ AR ++ ++K K + Sbjct: 47 VYPGVTTSELDELAAETAAYCSTQHPDFSKLAARI--------AISNLHKNTNKVFSENI 98 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRY 305 Q Y ++ V A L+ E + + L + + +RDF ++Y G + L Y Sbjct: 99 QLFYEN---KHDTTKVPAPLIAEDVYRVVIKNKEALNSAIIGDRDFDYDYFGFKTLEKSY 155 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L +NG E PQ MRVA+G+ E + +E Y +S F +TPTLFN+GT Sbjct: 156 LLRVNGKVCERPQHMIMRVAVGI---HKENLEAVLETYECMSQKFFTHATPTLFNAGTPR 212 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSCFL ++ DD + GI+ L++ A ++K++GG+G + +R ++I GTNG S G+ Sbjct: 213 PQLSSCFLLSMQDDSIDGIYDTLKQCACISKWAGGIGVSISNIRCTNSYIRGTNGSSNGI 272 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L+V NDTA V+QGG KRKG+ YLE WH D+ EFL+LRKN G++ R D+ A Sbjct: 273 VPMLRVFNDTARYVDQGGGKRKGSFAMYLEPWHADIFEFLELRKNHGNELHRARDLFYAL 332 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISA 542 WIPDLFMKRV N W+LF P+E L++ +G EF+ Y YE + + RK + A Sbjct: 333 WIPDLFMKRVEDNQEWSLFCPNEAPRLYETWGNEFDALYLKYE------SMNIARKTVKA 386 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW +L ETG P++ +KD CN +S QQ++G + SSNLC EI S S+E AVCNL Sbjct: 387 QQLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIRSSNLCCEIIEYSDSKEVAVCNL 446 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S+ L +F + KL + + L+ +IDIN + I +A+ SN HR IG+G+ G Sbjct: 447 ASVALSKFVYQKEFQFTKLYEITKIVTKNLNKIIDINYYPIPEAQSSNQRHRPIGIGVQG 506 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L+ +P+ S A ++ E E + F A+ AS+ELA+E G Y S+ GS +G F Sbjct: 507 LADTFLLMGLPFESKAARDLNKEIFETMYFAAMEASMELARELGPYESYSGSPVSKGTFQ 566 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D + + + R W LK++V G+RNS +A PTA+ A I G +SI Sbjct: 567 FDMWQVTPD---------SGRWDWKSLKEQVAAHGIRNSLLLAPMPTASTAQILGNCESI 617 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N++ + ++G+FT+VN +L+ EL + +LW + + + GS+ NI IP ++K Sbjct: 618 EPFTSNMFNRRVLAGEFTIVNKYLMEELIEMNLWTSDVRNQILRDRGSVQNIVEIPPNVK 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 + + T +EI +++ A+ R +I Q+QSLN+++ +P+ KL ++ AW GLKT Y Sbjct: 678 EKYKTVWEIKQKSILDMAADRGAYICQSQSLNIHIADPTVSKLTSMHFYAWKKGLKTGMY 737 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YLR+R + T VD K + +S+ L + EC VC Sbjct: 738 YLRTRPRADAIQFT---VDQK------SLDDSALAKLSQTQDVDEEEECLVC 780 >gi|38683667|gb|AAR26844.1| FirrV-1-A20 [Feldmannia irregularis virus a] Length = 766 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 282/746 (37%), Positives = 412/746 (55%), Gaps = 43/746 (5%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKA 243 + +Y G++ +L+ + + P+Y+ + AR + L +E +T+ K+ + Sbjct: 45 QGIYSGVTTRELDNLAAETCAYMSINHPDYSVLAARICVSNLYKETESCYSTLVKQLRDY 104 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 + E P V A L+ + + V A D E ++Y + L Sbjct: 105 VNPETGEWAPL---------VSAELVKVVTENREQVQEALDGFAE---TYDYFAYKTLEK 152 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 Y L +NG E P MRVA+G+ + A++ Y + S + +TPTLFN+GT Sbjct: 153 SYLLKMNGKIAERPHQLLMRVAIGI---HGDDITSALQTYRDMGSKRYTMATPTLFNAGT 209 Query: 364 RHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 PQ+SSCFL T DD + GIF L+ A ++KY+GGLG VRG G++I GTNG S Sbjct: 210 PTPQMSSCFLMTCKDDSISGIFDTLKNCACISKYAGGLGVSIHDVRGRGSYIRGTNGVSN 269 Query: 423 GVIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G++P L+V N+TA V+Q GG+RKG++ YLE WH D+E FLDL+KN G++ R D+ Sbjct: 270 GLVPMLRVFNNTARYVDQGGGRRKGSIAIYLEPWHADIESFLDLKKNQGNELERARDLFY 329 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A W+PDLFM+RV +N W+L P+E L +++GKEF+ YE YE + KV + Sbjct: 330 ALWVPDLFMRRVEKNQKWSLMCPNECPGLANVWGKEFDALYEKYEASPN----KVRATLD 385 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LW +L + ETG P+I +KD N +S QQH+GV+ SSNLCTEI +S +E AVCN Sbjct: 386 ARKLWNHILDVQVETGTPYILYKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCN 445 Query: 602 LGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 L SINL + + A DY L + VR L+ VID N + + +A+ SN HR + Sbjct: 446 LASINLSSVIRHPYTAEAYVDYTALVGLAGSLVRNLNRVIDKNYYPVPEARASNMKHRPV 505 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G+ GF AL +L PY SPEA I E I + A+ AS++ AQ G + SF GS Sbjct: 506 GIGVQGFADALIMLRKPYDSPEAAAINVNLFESIYYGALKASLQEAQLYGRHESFPGSPL 565 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 QG F D G+ T W+ L+ + G+RNS A PTA+ A I Sbjct: 566 SQGRFQFDLWGV----------QPTDTYDWNTLRASIVEHGVRNSLLCAPMPTASTAQIL 615 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G ++S +P N+Y + ++G+F VVN L+ +L DLWD+ M + L H+GS+ NI R Sbjct: 616 GNNESFEPFTTNVYNRRVLAGEFPVVNKHLLKDLTSLDLWDDEMKNQLLLHNGSVQNIAR 675 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 IP +K ++ T +EI +++ A+ R ++ Q+QS+N+++ EP+ KL + W G Sbjct: 676 IPRWVKDLYKTVWEIPQRVILDHAADRGPYVCQSQSMNIHMAEPTRAKLTSMLFHGWKRG 735 Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDG 921 LKT YYLR+R S GVDG Sbjct: 736 LKTGMYYLRTRPRAD---SIQFGVDG 758 >gi|302793891|ref|XP_002978710.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii] gi|300153519|gb|EFJ20157.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii] Length = 786 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 275/747 (36%), Positives = 425/747 (56%), Gaps = 51/747 (6%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 IV + +Y G++ S L+ ++ ++ P+YA + AR V++ ++KK Sbjct: 38 IVAQKVCAGVYKGVTTSQLDELAAETAASMTTSHPDYAILAARI--------VVSNLHKK 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 +K+ ++ +Y R G+KA L+ + D + L +++ Y+RDF ++Y Sbjct: 90 TKKSFSETVKEMYSHVDER---SGLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L +NG +E PQ MRV++G+ ++ E A++ Y+L+S F ++P Sbjct: 147 GFKTLERSYLLKVNGRVVERPQHMLMRVSVGIHKEDIEA---AIKTYHLMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + +D + GI+ L+E A+++K +GG+G +R ++I Sbjct: 204 TLFNAGTPRPQLSSCFLLCMKEDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATNSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRK DV ++LDL+KN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRK------------DVFDWLDLKKNHGKEEN 311 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ WIPDLFM+RV N+ W+LF P+E L D +G+EFE Y YER+ Sbjct: 312 RARDLFYGLWIPDLFMERVRSNSDWSLFCPNEAPGLADCWGEEFESLYTRYEREG----- 366 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + R +SA LW +L ETG+P++ FKD CN +S QQ++G + SNLCTEI +S Sbjct: 367 RAKRSLSAQKLWFAILESQMETGNPYMVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSP 426 Query: 595 EETAVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDN---VIDINCHTIEKAKKSN 650 ETAVCNL SI L + + KL + V +N +IDIN + ++ AK+SN Sbjct: 427 SETAVCNLASIALPRFVREQGINSETKLVDCFQVTTVVTENLNKIIDINYYPVDTAKRSN 486 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A LL +P+ S EA ++ + E I +HA+ S LA+ G Y + Sbjct: 487 LRHRPIGIGVQGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMKTSSVLAELYGVYET 546 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 + GS +GVF D ++ + R W LK+ V G+RNS +A PTA Sbjct: 547 YPGSPVSKGVFQPDMWNVIP----------SGRWDWPALKEMVARHGVRNSLLVAPMPTA 596 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + + I G ++ +P N+Y + +SG+F VVN L+N+L +W + + + ++GS Sbjct: 597 STSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGS 656 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I +IE IPDDLK+I+ T +EI +++ A R +IDQ+QSLN+++++P+ KL ++ Sbjct: 657 IQSIEGIPDDLKQIYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHF 716 Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTL 916 AW GLKT YYLRS++A K T+ Sbjct: 717 HAWSGGLKTGMYYLRSQAAADAIKFTV 743 >gi|294660114|ref|XP_462554.2| DEHA2G23276p [Debaryomyces hansenii CBS767] gi|199434472|emb|CAG91065.2| DEHA2G23276p [Debaryomyces hansenii] Length = 861 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 28/651 (4%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD Y G++ L + Y L ++ E PQ F+RVA+G+ + + +E Y L+S Sbjct: 145 RDLELTYFGIKTLQNSYLLKLDNVVSETPQFMFLRVAIGIHGDDIDS---VIETYELMSQ 201 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 +F+ ++PTLFNSGT + LSSCFL + DD + GI+ L ++A+++K SGG+G + Sbjct: 202 KYFIHASPTLFNSGTEYNYLSSCFLLAMEDDSIDGIYKTLHKSALISKASGGIGLHVHNI 261 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 RG G++I +NG S G++P L+V N+TA V+QGG KR GA Y+E WH D+ LDL+ Sbjct: 262 RGSGSYIASSNGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYIEPWHCDIISILDLK 321 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KN G + R D+ WIPDLFM+RV Q+ W+LFSPD L D YG F+ YE YE Sbjct: 322 KNHGKEEMRARDLFYGLWIPDLFMERVKQDLDWSLFSPDITPGLSDCYGDAFKTLYEKYE 381 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 K R I A LWR +L ETG P++ FKD CN +S Q+++G + SSNLC Sbjct: 382 ESG-----KAIRTIKAQKLWRAILECQTETGGPYMLFKDACNSKSNQRNLGTIKSSNLCC 436 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN---QFDYDKLASTIRTAVRVLDNVIDINCHTI 643 EI SS EETAVCNLGS+ L + N+ ++D+DKL + + + L+ +IDI + I Sbjct: 437 EIIEYSSPEETAVCNLGSLALPSFIKNSNELEYDFDKLHTVTKVLAKNLNKIIDITKYPI 496 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E AK SN +R I +G+ G L +P+ S +A + + E I A+ S+ELA Sbjct: 497 ESAKFSNMRNRPIAVGVQGLADLFLELRLPFDSNQAKVLNTQIFETIYHAAVEVSIELAI 556 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNS 761 + G Y +FKGS +G+F D L ++ S+L WDELK + KT+G+RNS Sbjct: 557 KDGPYDTFKGSPISEGLFQFD-----------LWNHKPSQLYSDWDELKLKAKTLGVRNS 605 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A PTA+ + I G ++ +P N+Y + +SG+F VVN +L+ +L +W+ +M Sbjct: 606 LLVAPMPTASTSQILGFNECFEPYTSNIYNRRVLSGEFQVVNKYLMKDLIDLGIWNSSMK 665 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 + + +GSI NI IP +LK+++ T +EI +IE A+ R K+IDQ+QS+N++L +P+ Sbjct: 666 NKIILENGSIQNIPSIPKELKQLYKTVWEISQKVIIELAADRGKFIDQSQSMNIHLQDPT 725 Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG-KLNAVPVTD 930 KL + AW GLKT YYLR+++AT + T+ + KL+ P D Sbjct: 726 FGKLTSSHFYAWEKGLKTGMYYLRTQAATRAIQFTVDLAESRKLDVQPEAD 776 >gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex quinquefasciatus] gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex quinquefasciatus] Length = 838 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 276/770 (35%), Positives = 430/770 (55%), Gaps = 52/770 (6%) Query: 166 VEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL D + ++ + +Y G++ +L+ ++ TL + +YA + AR Sbjct: 22 IQKLCYGLNMDFVDPVAITLKVINGLYTGVTTQELDNLAAETAATLTTEHADYAILAARL 81 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+ +Y + + + E++ + +MD Sbjct: 82 AVSNLHKETKKHFSDVMADLYNMENEFLKTKSPMISDEHY--------------KIIMD- 126 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L + + Y+RDF + Y G + L Y L I G +E PQ MRVA+G+ + + Sbjct: 127 NADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKVVERPQHMLMRVAVGIHGLDIDA- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNLLS +F ++PT+F + TR PQLSSCFL T+ DD + GI+ L++ A+++K Sbjct: 186 --AIETYNLLSERYFTHASPTMFAAATRRPQLSSCFLLTMSDDSIDGIYDTLKQCALISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G + +R G +I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 244 SAGGIGVNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ EFLDL+KNTG + R DM A WIPDLFMKRV N W L P + L + + Sbjct: 304 WHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWCLMCPHDCPGLPETW 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE Y YE + + RK+ A LW ++ ETG P++ +KD CN +S QQ Sbjct: 364 GEEFEKLYTTYENEG-----RYIRKVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQ 418 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVL 632 ++G + SNLCTEI SS +E AVCNL SI N+ + +D+ KL + + L Sbjct: 419 NIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVK-PDKSYDFQKLKEVSKIVTKNL 477 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +IDIN + + +AK+SN HR IG+G+ G A L+ PY S EA ++ + E I + Sbjct: 478 NKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEAQKLNQQIFETIYY 537 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELK 750 A+ AS E+A++ G Y ++ G +G+ D N+ WD LK Sbjct: 538 GALEASCEIAEKDGTYETYDGCPVSKGILQYD------------MWNKAPSDLWDWAPLK 585 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VVN L+ +L Sbjct: 586 EKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDL 645 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +LWD+ M + + +GSI +I+ IP +++++ T +EI I+ A+ R +IDQ+ Sbjct: 646 TELELWDDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKMAADRGAFIDQS 705 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 QS N+++ EP+ KL I+ W MGLKT YYLR++ A + + T+ V Sbjct: 706 QSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKV 755 >gi|328875304|gb|EGG23669.1| ribonucleotide reductase large subunit [Dictyostelium fasciculatum] Length = 942 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 270/746 (36%), Positives = 421/746 (56%), Gaps = 52/746 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE- 247 ++ G+ ++L+ ++ + K P+YA + AR + L K TH Sbjct: 141 VFPGVKTTELDNLAAETAAYMSTKHPDYAVLAARIAVSNL------------HKQTHESF 188 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND--------LKYERDFAFEYLGLQ 299 ++ + ++ + G A L+ + +++ LAN +KY RDF +++ G + Sbjct: 189 LETVKLQHGYVSPKTGAPAPLVSD-----EILALANKHVDRIEAAIKYTRDFEYDFFGFK 243 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 L Y +N IE PQ MRV++G+ + + A++ Y+ LS+ +F +TPTLF Sbjct: 244 TLERSYLHRVNDMIIERPQHLLMRVSLGIHGDDIDA---AIDTYDQLSNRYFTHATPTLF 300 Query: 360 NSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N+GT PQ+SSCFL + DD + GI+ L++ A+++K +GG+G +R ++I GTN Sbjct: 301 NAGTNSPQMSSCFLVQMKDDSIEGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTN 360 Query: 419 GKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDL+KN G + R Sbjct: 361 GTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDLKKNHGKEEMRAR 420 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 D+ A W+ DLFM+RV QNA W+LF P+E L D YG +F Y +YE+ Sbjct: 421 DLFYALWVSDLFMERVEQNAEWSLFCPNEAPGLADCYGDKFRDLYLSYEQTPGLAR---- 476 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 + + A LW ++ ETG P+I +KD CN +S Q+++G + SNLCTEI +S++E Sbjct: 477 KVVKAQDLWFAIIDSQIETGTPYILYKDACNEKSNQKNLGTIQCSNLCTEIIQYTSADEV 536 Query: 598 AVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 AVCNL SI L A FD++ LA R R L+ +ID N + +E+A++SN Sbjct: 537 AVCNLASIALPKFVKRSSPSAVASFDHNHLAEITRIITRNLNKIIDRNFYPVEEARRSNM 596 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 HR G+G+ G L +P+ SP A + E E I + ++ AS +LA+ G Y +F Sbjct: 597 RHRPTGIGIQGLADVFIALRMPFDSPAAAVLNKEIAETIYYASLDASCQLAERDGPYETF 656 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS QG+ D + +V+ ++R W LK+R+ G+RNS +A PTA+ Sbjct: 657 AGSPASQGILQFD----MWDVQP------SARWDWAALKQRIVKHGLRNSLLVAPMPTAS 706 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G ++ +P N+Y + ++G+FTVVN L+ +L LW M + + + GS+ Sbjct: 707 TSQILGNNECFEPYTSNIYSRKVLAGEFTVVNKQLLQDLMALGLWTPEMKNQIIANRGSV 766 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 N++ IPDDLK+++ +A+EI LI+ A+ R +IDQ+QS N+++ EP+ KL ++ Sbjct: 767 QNVQGIPDDLKELYKSAWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPNFAKLTSMHFY 826 Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTL 916 AW GLKT YYLR+R+A + T+ Sbjct: 827 AWKKGLKTGMYYLRTRAAADAIQFTV 852 >gi|260945435|ref|XP_002617015.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720] gi|238848869|gb|EEQ38333.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720] Length = 878 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 269/668 (40%), Positives = 387/668 (57%), Gaps = 29/668 (4%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--K 337 YL ++ ERD F Y G++ L YFL I+ E PQ F+RVA+GL K +K + Sbjct: 133 YLDKLVRPERDMNFTYFGMRTLCKSYFLQIDNVVAETPQYLFLRVAIGLHGKLDDKNALQ 192 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396 R E Y+L+S + + S+PTLF++GT + LSSCFL + +D + GIF L A+++K Sbjct: 193 RVSEIYDLMSEKYLIFSSPTLFSAGTNNNFLSSCFLMGIKEDSIDGIFKTLHSAALISKG 252 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 SGGLG +R G+ I +NG S G++P LKV N+TA V+QGG KR GA Y+E W Sbjct: 253 SGGLGIHVHNIRSNGSAISSSNGTSNGLVPMLKVFNNTARYVDQGGNKRPGAFAIYIEPW 312 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ E L+LRKN G D R D+ A WIPDLFMKRV N W+LFSP + L D+YG Sbjct: 313 HGDIMEVLELRKNHGPDELRARDLFFALWIPDLFMKRVKNNGKWSLFSPSKAPGLSDVYG 372 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EFE Y+ YE E I A LW +L ETG P++ +KD CN +S Q + Sbjct: 373 EEFESLYQKYEE-----EDLACTTIEARKLWMHILQAQTETGMPFMLYKDACNRKSNQMN 427 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630 +G + SSNLC EI SS EETAVCNL S+ L N+ FD+ KL + R Sbjct: 428 LGTIKSSNLCCEIVEYSSPEETAVCNLASLGLPTFVTANENGNVAFDFKKLHKVTKILAR 487 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD VID+ + I+ AK SN HR I +G+ G L +P+ S EA + + E I Sbjct: 488 SLDRVIDVTKYPIKSAKVSNLKHRPIAIGVQGLADTFLELRLPFDSAEAATLNSQIFETI 547 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 AI +S+EL++E+G Y SF+GS +G D + D+ WDELK Sbjct: 548 YHAAIESSMELSKEKGYYESFEGSPASKGKLQFDLWNYKPDFFDD----------WDELK 597 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN +LV +L Sbjct: 598 EQVKKYGLRNSLLVAAMPTASTSQILGFNECFEPFTSNIYNRRVLSGEFQVVNKYLVKDL 657 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +W++A+ + ++GS+ NI+ IP LKK++ T +EI ++ A+ R ++IDQ+ Sbjct: 658 RALGIWNKAVKDMIIMNNGSVQNIDIIPQKLKKLYKTVWEISQKHIVRLAAERGRFIDQS 717 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL--KGVDGKLNAVP 927 QS+N++L P+ L + AW GLKT YYLR+++A + T+ + ++ KL ++ Sbjct: 718 QSMNIHLMNPTFGTLTSCHFFAWEQGLKTGMYYLRTQAAARAIQFTVDKQEIEAKLKSMV 777 Query: 928 VTDPNSST 935 V P ST Sbjct: 778 V--PEVST 783 >gi|328722843|ref|XP_003247688.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 802 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 276/829 (33%), Positives = 449/829 (54%), Gaps = 58/829 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 KL + DG + ++ M +E+ C GL + + ++ G+S ++ Sbjct: 11 KLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQIDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 ++ L K P++A + AR + L +E V+ +Y + M+ + Sbjct: 71 AAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDVIYDLYNMSNERNQRRMKIISDF 130 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 ++ ++ + L N +K++RD+ + Y G + L Y L ING + Sbjct: 131 HYGVVMKHADR---------------LNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVV 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRV++G+ ++ + A+E Y+L+SS +F ++PT+FN+ T PQLSSCFL Sbjct: 176 ERPQHLLMRVSIGIHGEDIDA---AIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLV 232 Query: 375 TVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVAN 432 D FG ++ A +++ SGG+G + G +S G++ LKV N Sbjct: 233 ANKSDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLN 292 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D A V+QGGKR GAV Y+E WH DV + +LRKNTG+ +T D+ A WIPD FM+R Sbjct: 293 DLAQYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+L P + L D++G +F Y+ YE E + R++SA LW +++T Sbjct: 353 VEANQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITS 407 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAH 610 ETG P++ +KD CN +S Q+++G + SNLCTEI +SSEE AVCNL SI N+ Sbjct: 408 QIETGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVK 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N ++D++KL + + L+ VID+N + + +A+ SN HR +G+G+ G L+ Sbjct: 468 -PNGEYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLM 526 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 P+ SPE+ ++ + E + + A+ AS ELA++ G YSS++GS QG+ D + Sbjct: 527 RFPFGSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNV-- 584 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 T WD LK+++ G+RNS +A PTA+ A I G ++SI+P NLY Sbjct: 585 --------KPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLY 636 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F+VVN L+N+L + +LW+E M ++L Y+ GS+ I+ IPD++K+++ T +E Sbjct: 637 YRRTLSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWE 696 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 + +++ A+ R +IDQ+QSLN+++++P+ K+ ++ W GLKT YYLR+R A Sbjct: 697 LSQKIILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAA 756 Query: 910 -----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +V KSTL N T+ N + + S + C +C Sbjct: 757 DPIQFTVNKSTLSS-----NIAIQTEKNDALSMQELVCSLENKDACTMC 800 >gi|73852902|ref|YP_294186.1| putative ribonucleoside-diphosphate reductase protein [Emiliania huxleyi virus 86] gi|72415618|emb|CAI65855.1| putative ribonucleoside-diphosphate reductase protein [Emiliania huxleyi virus 86] Length = 746 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/767 (35%), Positives = 420/767 (54%), Gaps = 48/767 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ +GT S ++ ++ GL V +V + + +YDG++ L+ + Sbjct: 1 MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EE 262 ++ L P+Y+K+ AR +++++K M LY Y+ + Sbjct: 61 TATYLTMTHPDYSKLAARI--------AVSSLHKMTSNKFSSVMDSLY-----NYVNTKT 107 Query: 263 GVKARLLHESMMD--------FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 G + L+ + +++ FD V + YE+D ++ G + + Y ING + Sbjct: 108 GKWSPLIADDIIECIRSNAEVFDDV-----INYEKDLEYDIFGYKTMEKSYLSRINGDIV 162 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ + + A+E Y LLS+ F +TPT++N+GTR+PQ+SSCFL Sbjct: 163 ERPQHMLMRVAIGIHCPDVDA---AIETYKLLSARVFTHATPTMYNAGTRNPQMSSCFLL 219 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + DD + GIF L+ A+++K +GG+G VR ++I GT G S G++P L+V ++ Sbjct: 220 KMKDDSIEGIFDTLKNCALISKNAGGIGVSIHNVRAQNSYIRGTGGYSNGLVPMLRVFDN 279 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKGA YLE H D+ EFL+LRKNTG + R D+ A W+ D FMKR Sbjct: 280 TARYVDQGGGKRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKR 339 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V W+LF P E L D++G ++ YE YE + K + I A LW ++ Sbjct: 340 VEAGKNWSLFCPHECPGLSDVWGDDYVALYEKYESEG-----KARKTIPAQKLWFAIMDS 394 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD CN +S QQH+G + SNLCTEI ++ +ETAVCNL SI L A Sbjct: 395 QIETGTPYMLYKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVK 454 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + FD+ L A LD VID N + I +A++SN HR IGLG+ G +L + Sbjct: 455 DGTFDHQHLYDVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKM 514 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 + SP+A + E E + F A++AS +LA+ +G YS+++GS QG F D + V Sbjct: 515 AFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSQGKFQFDLWNVTPSV 574 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 R WD L+ VK G RNS A PTA+ A I G ++ +P NLY + Sbjct: 575 ----------RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSR 624 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN +LV +L R LW ++M + + +GS+ NI P+DLK I+ T +EI Sbjct: 625 RVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEIS 684 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 LI+ A+ R +I Q+QS N+++ +P+ KL ++ W GLKT Sbjct: 685 MRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731 >gi|207345939|gb|EDZ72594.1| YER070Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 732 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 274/745 (36%), Positives = 412/745 (55%), Gaps = 51/745 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + C GL + + + V +Y+G++ +L+ + + P+YA + AR Sbjct: 22 ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280 + L +K+ K ++ LY RY+ G A ++ + + +++V Sbjct: 82 AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126 Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ ++ E Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEA- 185 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + +D + GI+ L+E A+++K Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454 +GG+G +R G++I GTNG S G+IP ++V N+TA V+QGG KR GA YLE Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WTLFSP L D Y Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE Y YE++ RG + I A LW +L ETG P++ +KD CN +S Q+ Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628 ++GV+ SSNLC EI S+ +ETAVCNL S+ L A ++ +++ KL + Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ S EA + + E Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I ++ AS ELAQ+ G Y +F+GS QG+ D + D+ WD Sbjct: 538 TIYHASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+K + G+RNS MA PTA+ + I G ++ +P N+Y + +SG+F VVN +L+ Sbjct: 588 LRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L +WDE M L +GSI + +P +LK ++ T +EI +I A+ R +ID Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAW 893 Q+ SLNL+L P+ KL ++ W Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGW 732 >gi|294871762|ref|XP_002766029.1| ribonucleoside-diphosphate reductase large chain, putative [Perkinsus marinus ATCC 50983] gi|239866594|gb|EEQ98746.1| ribonucleoside-diphosphate reductase large chain, putative [Perkinsus marinus ATCC 50983] Length = 1504 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 274/749 (36%), Positives = 428/749 (57%), Gaps = 45/749 (6%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + + + +Y G++ ++L++ + + + P+++ + AR + L Sbjct: 41 ITQKVAEGIYPGVTTTELDSLAAETCAYMSQVHPDFSTLAARIAVSNL------------ 88 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND-----LKYERDFAFEY 295 K TH E + G + L+ E + +++V + D + Y+RDF ++Y Sbjct: 89 HKNTHESFSETITELYNITDSRGRSSPLVSEEV--YNIVKMNADKLDKAIDYDRDFDYDY 146 Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 G + L Y L + IE PQ MRVA+G+ + + A+E Y L+S+ F Sbjct: 147 FGFKTLERSYLLKRPSDKTCIERPQHMIMRVAVGIHGDDVDA---AIETYALMSTRVFTH 203 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTLFNSGT HPQ+SSCFL ++ +D + GI+ L++ AM++K +GG+G T +R + Sbjct: 204 ATPTLFNSGTPHPQMSSCFLLSIKEDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATES 263 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G++P L+V NDTA V+QGG KRKG+ YLE WH DV EFLDL+KN G Sbjct: 264 YIRGTNGFSNGIVPMLRVFNDTARYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGK 323 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + R D+ A WIPDLFMKRV N WTLF P+E L D YG+EFE YE YE+ Sbjct: 324 EEHRARDLFYALWIPDLFMKRVMANGDWTLFCPNEAPGLQDTYGEEFEALYEKYEKDG-- 381 Query: 532 GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 + RK + A +LW K+L ETG P++ +KD N +S Q+++G + SNLC EI Sbjct: 382 ----IGRKTVKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIE 437 Query: 591 NSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 +SS+E AVCNL SI N+ +D+D+L + + L+ VID N + + +A+K Sbjct: 438 YTSSDEVAVCNLASIALNMFVDKKTRTYDFDRLHRVAKVVTKNLNKVIDRNYYPVPEARK 497 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 SN HR IG+G+ G A L+ PY SPEA+++ ++ E I A AS+ELA+ G Y Sbjct: 498 SNMRHRPIGIGVQGLADAFLLMRYPYESPEALKLNNDIFETIYHAACEASMELAKRDGPY 557 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F+GS +G+ D ++ + + R W LK+ +K GMRNS +A P Sbjct: 558 ETFQGSPASEGILQFDMWDVIPD---------SGRWDWASLKEEIKKNGMRNSLLIAPMP 608 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TA+ A I G +++ +P QN+YV+ ++G+F VN LV++L + LW++ + + Sbjct: 609 TASTAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKK 668 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 GS+ +E IP +++ ++ T +EI +++ A+ R +IDQ+QSLN+++ + KL + Sbjct: 669 GSVQGVEEIPSEIQDLYKTVWEIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSM 728 Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + W +GLKT YYLR+++A + TL Sbjct: 729 HFYGWKLGLKTGQYYLRTKAAADAIQFTL 757 >gi|308750952|gb|ADO44435.1| ribonucleoside-diphosphate reductase, alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 792 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 282/790 (35%), Positives = 423/790 (53%), Gaps = 82/790 (10%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++++ AC GL+ V + ++ +G+S +++ LI ++ + E P++ V Sbjct: 42 KIRIVIDFACRGLR-VDPLELEADAQIQFREGISTKEIQQLLIRTAAEKVSPENPDWQYV 100 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR----YIEEGVKARLLHESMMD 275 AR LL L ++V K + + + PE F Y E+G+ L Sbjct: 101 AARLLLYDLYKDVGHIRGYKVKDKINGRYKPYNPESFYNLVKNYAEKGIYGEYLLREYSK 160 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE 334 D LA+ +K +RD F Y G+++LYDRY + G+ IE+PQ +M ++M LAL E + Sbjct: 161 EDFQALASYIKPDRDLLFNYTGIKVLYDRYLVRDEEGNVIELPQEMYMLISMSLALPEKK 220 Query: 335 KE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 +E K FY+L+S +TPTL N+ H QLSSCF+ TV DDLY IF +Q+ Sbjct: 221 EERIKWVKTFYDLMSKHEVSLATPTLMNARRPHTQLSSCFVLTVDDDLYDIFDNVQKAGQ 280 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++K++GGLG VR G+ I G S GV+P +K+ ND V V+Q G RKG+ L Sbjct: 281 ISKFAGGLGIYLGKVRATGSPIRKFKGASSGVLPVVKILNDVMVYVDQLGMRKGSASITL 340 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP------DE 506 + WH DV +FL+++ N GD+R++ HD++ A IPD+FMKR+ WTL P + Sbjct: 341 DIWHKDVMDFLEVKTNVGDERKKAHDIHPAISIPDIFMKRLKNREKWTLLDPYYCKNVKD 400 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 +L D YG+EFE Y+ ER+ K ++ A LW+++LT++FETG P+I F+D Sbjct: 401 GKNLEDFYGEEFEELYQRLERELPPNAKK---EVDAFELWKRLLTVVFETGEPYIFFRDT 457 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS---------------------SEETAVCNLGSI 605 N +P +H GVV+SSNLC EI N S S + VCNLGSI Sbjct: 458 ANRLNPNKHCGVVYSSNLCHEIVQNMSASQHIEDSLDPQTGEIVHRKKSGDVVVCNLGSI 517 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + + + + VR+LDNVI IN + I++A+ +N +RAIG+G+ + Sbjct: 518 NL-----GKVYTKEDMERVVPLLVRMLDNVISINYYAIKEAEYTNRRYRAIGIGVSNYHY 572 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L I + S E ++ A+ E I+++AI S+ELA+ERG Y F+GS W +GVF Sbjct: 573 CLVKNAIQWESEEHLKFANALFERIAYYAIKGSMELAKERGRYPLFEGSDWSKGVF---- 628 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 G AE ++ + L W EL + VKT G+RN+ +A+ PT + + I G + S+DP Sbjct: 629 FGRDAEENQRMSEKNGNNLNWIELAEEVKTYGLRNAYLLALMPTGSTSLIIGATPSVDPI 688 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + NMSG V + R W + Sbjct: 689 FAKFYKEENMSGILPQVPPEI-----DRYFWH---------------------------Y 716 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--SGKKLDFIYRQAWLMGLKTTYYL 903 +A+ ID W+I +AS RQKWIDQAQSLNL++D G L +Y +W +GLKT YY Sbjct: 717 KSAYSIDQEWIIRAASERQKWIDQAQSLNLFIDPEHVDGPTLSKLYELSWELGLKTVYYC 776 Query: 904 RSRSATSVEK 913 RS+S T +E+ Sbjct: 777 RSKSLTEIEE 786 >gi|165969145|ref|YP_001651045.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV] gi|164663641|gb|ABY65861.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV] Length = 761 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 269/773 (34%), Positives = 424/773 (54%), Gaps = 45/773 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 KL ++ DG+ + ++ + GL Q + + + K +Y G++ ++L+ Sbjct: 8 KLYVIKRDGSKQTVLLDKITSKLNRLSYGLNKQFIDPAAITIQVVKTIYAGVTTTELDQH 67 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + + +YA + R +++ + V P+ F R + Sbjct: 68 AAKETANMAYIHDDYALLAGRIMVDDNHKHV--------------------PDSFVRVVA 107 Query: 262 EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 + K L+ ++ + + L + Y+RD+ ++Y + L + Y ING E Q Sbjct: 108 KLYKHNLVSLALFEVASANADALEAQIDYKRDYEYKYFAYKTLENGYLKRINGRVAERIQ 167 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 MRVA+G+ ++ + A+E YNL ++ F ++PTLF +G PQLSSCFL T+ + Sbjct: 168 HMLMRVAIGIHGRDIDA---AIETYNLTANKMFTHASPTLFAAGCPQPQLSSCFLLTLKE 224 Query: 379 D-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + G++ L + A ++KY GGLG + R G+ I GTNG + GV P L+V N+ Sbjct: 225 DSIKGMYETLADCAQISKYGGGLGVNVHKARARGSAIRGTNGTASGVEPLLRVYNNCVRH 284 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+QGGKRKGA+ YLE WH D+ +FL+L++N G + ++ D+ A W+PDLFMKRV QN Sbjct: 285 VDQGGKRKGAMAVYLEPWHADIYDFLNLKRNMGAEDKKARDLLYALWVPDLFMKRVQQNE 344 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L PD L D+Y EFE YE YE E + ++ A +L+R ++ ETG Sbjct: 345 MWSLMCPDRCPGLSDVYSLEFEKLYEQYE-----SENRFTCQVEARSLFRTIIETQVETG 399 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P+I +KD CNI+S Q+++G + SNLC EI SSSEE AVCNL S+ + + FD Sbjct: 400 TPYILYKDACNIKSNQKNLGTIRCSNLCAEIVQYSSSEEIAVCNLASVCVNRFIKSGVFD 459 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + L S + V+ L+ +IDIN + +E AK+SN HR +G+G+ G A +L +PY S Sbjct: 460 FVALKSVTKIVVKNLNKIIDINYYPLEAAKESNLKHRPVGVGIQGLADAFCILGLPYESD 519 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A + + E + + A+ AS +LA+ G YSS+ S GV D + Sbjct: 520 KAKMLNKQIAETVYYAALEASCDLAKLNGPYSSYSDSPASLGVLQYDMWNV--------- 570 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T+ W +LK R+ G+RNS +A PTAT A I G ++S +P NLYV+ ++G Sbjct: 571 -QPTNLWNWADLKLRIAKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNLYVRRVLAG 629 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 DF V+N LV +L + +L+D+ M + + GS+ I+RIPDD+K ++ T +E+ LI Sbjct: 630 DFQVINQHLVEDLCRLNLYDDHMRNSIIAAGGSVQKIDRIPDDIKAVYKTVWEMSSKNLI 689 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 + A+ R +IDQ+QS N+++ +PS L ++ W GLKT YYLR++ A Sbjct: 690 DMAADRGAFIDQSQSFNVFIAQPSFALLTSVHMHTWKRGLKTGMYYLRTKPAA 742 >gi|47222551|emb|CAG02916.1| unnamed protein product [Tetraodon nigroviridis] Length = 898 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 299/866 (34%), Positives = 446/866 (51%), Gaps = 137/866 (15%) Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +Y G++ ++L+T ++ TL K P+YA + AR + L +E +K Sbjct: 69 QGLYSGVTTAELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 120 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--------YERDFAFEYLGL 298 M+ LY Y+ K LH M+ + +++ + K Y+RDF++ + G Sbjct: 121 VMEDLY-----NYVNPLNK---LHSPMISKETLHIIRENKARLNSAIIYDRDFSYNFFGF 172 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 + L Y L ING E PQ MRVA+G+ + E A+E YNLLS F ++PTL Sbjct: 173 KTLERSYLLKINGKVAERPQHMLMRVAVGIHQADMEA---AIETYNLLSERWFTHASPTL 229 Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 FN+GT QLSSCFL T+ DD + GI+ L++ A+++K +GG+G + +R G++I GT Sbjct: 230 FNAGTNRSQLSSCFLLTMKDDSIEGIYDTLKQCALVSKSAGGIGLAVSCIRATGSYIAGT 289 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-----------------------------KRKGAV 448 NGKS G++P L+V N+TA V+QGG +R GA Sbjct: 290 NGKSNGLVPMLRVYNNTARYVDQGGNKVRMKVGEQTASRLRNIRDVIQVWLFLGQRPGAF 349 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YLE WH DV +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+L P E Sbjct: 350 AVYLEPWHSDVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPSECP 409 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L D +G+EFE Y YE++ + R + A LW ++ ETG P++ +KD CN Sbjct: 410 GLTDCWGEEFEELYTRYEKEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 464 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRT 627 +S QQ++G + SNLCTEI +S +E AVCNL SI L + + +D+ KLAS +T Sbjct: 465 RKSNQQNLGTIRCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPQRTYDFHKLASVTKT 524 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 V+ L+ +IDIN + + +AK+SN HR IG+G+ G A L+ PY SPEA + + Sbjct: 525 IVKNLNKIIDINYYPVPEAKRSNLRHRPIGIGVQGLADAFILMRHPYESPEAQLLNTQIF 584 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I A+ AS ELA E G Y ++ GS +GV D G T W Sbjct: 585 ETIYHAALEASCELAAEFGPYQTYAGSPVSRGVLQYDMWG----------KTPTDLWDWT 634 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV------ 801 LK+++ G+RNS +A PTA+ A I G ++S + N+Y + +SG+F V Sbjct: 635 ALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEAYTSNIYTRRVLSGEFQVCTRAFR 694 Query: 802 -------------------VNSFLVNELKQRDLWDEAMISDLKYHDGSI----------- 831 VN L+ +L +R LW + M + L H+GSI Sbjct: 695 PSLTAAGKAERKIWPRLQIVNPHLLKDLTERGLWSDGMKNQLIAHNGSIQVERRICCISS 754 Query: 832 ------------------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 NI IPDDLK+++ T +EI +++ A+ R +IDQ+QSL Sbjct: 755 TISLWQKPIFYKYFFNGQQNIPEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSL 814 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAVP 927 N+++ EP+ KL ++ W +GLKT YYLR++ A ++ K TLK + A Sbjct: 815 NIHIAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKETLK----EAQAAR 870 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953 + + ++ + S + EC +C Sbjct: 871 SEEESKERNAAAVVCSLANKDECMMC 896 >gi|288817345|ref|YP_003431692.1| ribonucleotide reductase alpha subunit [Hydrogenobacter thermophilus TK-6] gi|288786744|dbj|BAI68491.1| ribonucleotide reductase alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 767 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 282/790 (35%), Positives = 423/790 (53%), Gaps = 82/790 (10%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++++ AC GL+ V + ++ +G+S +++ LI ++ + E P++ V Sbjct: 17 KIRIVIDFACRGLR-VDPLELEADAQIQFREGISTKEIQQLLIRTAAEKVSPENPDWQYV 75 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR----YIEEGVKARLLHESMMD 275 AR LL L ++V K + + + PE F Y E+G+ L Sbjct: 76 AARLLLYDLYKDVGHIRGYKVKDKINGRYKPYNPESFYNLVKNYAEKGIYGEYLLREYSK 135 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE 334 D LA+ +K +RD F Y G+++LYDRY + G+ IE+PQ +M ++M LAL E + Sbjct: 136 EDFQALASYIKPDRDLLFNYTGIKVLYDRYLVRDEEGNVIELPQEMYMLISMSLALPEKK 195 Query: 335 KE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 +E K FY+L+S +TPTL N+ H QLSSCF+ TV DDLY IF +Q+ Sbjct: 196 EERIKWVKTFYDLMSKHEVSLATPTLMNARRPHTQLSSCFVLTVDDDLYDIFDNVQKAGQ 255 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++K++GGLG VR G+ I G S GV+P +K+ ND V V+Q G RKG+ L Sbjct: 256 ISKFAGGLGIYLGKVRATGSPIRKFKGASSGVLPVVKILNDVMVYVDQLGMRKGSASITL 315 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP------DE 506 + WH DV +FL+++ N GD+R++ HD++ A IPD+FMKR+ WTL P + Sbjct: 316 DIWHKDVMDFLEVKTNVGDERKKAHDIHPAISIPDIFMKRLKNREKWTLLDPYYCKNVKD 375 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 +L D YG+EFE Y+ ER+ K ++ A LW+++LT++FETG P+I F+D Sbjct: 376 GKNLEDFYGEEFEELYQRLERELPPNAKK---EVDAFELWKRLLTVVFETGEPYIFFRDT 432 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS---------------------SEETAVCNLGSI 605 N +P +H GVV+SSNLC EI N S S + VCNLGSI Sbjct: 433 ANRLNPNKHCGVVYSSNLCHEIVQNMSASQHIEDSLDPQTGEIVHRKKSGDVVVCNLGSI 492 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + + + + VR+LDNVI IN + I++A+ +N +RAIG+G+ + Sbjct: 493 NL-----GKVYTKEDMERVVPLLVRMLDNVISINYYAIKEAEYTNRRYRAIGIGVSNYHY 547 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L I + S E ++ A+ E I+++AI S+ELA+ERG Y F+GS W +GVF Sbjct: 548 CLVKNAIQWESEEHLKFANALFERIAYYAIKGSMELAKERGRYPLFEGSDWSKGVF---- 603 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 G AE ++ + L W EL + VKT G+RN+ +A+ PT + + I G + S+DP Sbjct: 604 FGRDAEENQRMSEKNGNNLNWIELAEEVKTYGLRNAYLLALMPTGSTSLIIGATPSVDPI 663 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + NMSG V + R W + Sbjct: 664 FAKFYKEENMSGILPQVPPEI-----DRYFWH---------------------------Y 691 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--SGKKLDFIYRQAWLMGLKTTYYL 903 +A+ ID W+I +AS RQKWIDQAQSLNL++D G L +Y +W +GLKT YY Sbjct: 692 KSAYSIDQEWIIRAASERQKWIDQAQSLNLFIDPEHVDGPTLSKLYELSWELGLKTVYYC 751 Query: 904 RSRSATSVEK 913 RS+S T +E+ Sbjct: 752 RSKSLTEIEE 761 >gi|167947197|ref|ZP_02534271.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 438 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/381 (60%), Positives = 285/381 (74%), Gaps = 6/381 (1%) Query: 485 IPDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 IPDLFMKRV + WTL P + H +Y E +A RGEIKVFR + Sbjct: 1 IPDLFMKRVAEEGDWTLVLPQRGARPARPHRWLSSR--PSYTACEEKAARGEIKVFRSLK 58 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 AV LWRKML ML+ETGHPWITFKDPCNIR QH GVVHSSNLCTEITL+++ E AVCN Sbjct: 59 AVDLWRKMLGMLYETGHPWITFKDPCNIRYTNQHAGVVHSSNLCTEITLHTNDSEIAVCN 118 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NL AH N D KL T+ TA+R+LDNVID N +++ +A+ SN HR +GLG++ Sbjct: 119 LGSVNLAAHVDENGLDIAKLERTVTTAMRMLDNVIDYNYYSVPQARHSNLRHRPVGLGIL 178 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ I YAS +A+ AD SME +S++AI AS ELA ERG YSS++GSLW QGV Sbjct: 179 GFQDALYKQRIGYASEQALTFADRSMEAVSYYAIQASSELAAERGRYSSYEGSLWSQGVL 238 Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PIDS+ L + R D L ++++S L WD L+++VKT GMRNSN MAIAPTATI+NI GVSQ Sbjct: 239 PIDSLQQLKQARGDYLQIDQSSSLDWDALREKVKTQGMRNSNTMAIAPTATISNIVGVSQ 298 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNL+VKSN+SG+FTVVN +LV++LK+ LWDE MI+DLKY+DGS+ IER+P + Sbjct: 299 SIEPTYQNLFVKSNLSGEFTVVNPYLVHDLKREGLWDEVMINDLKYYDGSLAPIERVPAE 358 Query: 841 LKKIHATAFEIDPMWLIESAS 861 LK ++ATAFEIDP WL+ES S Sbjct: 359 LKVLYATAFEIDPRWLVESGS 379 >gi|294471323|gb|ADE80908.1| RR1 [Spodoptera litura NPV] Length = 778 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 265/780 (33%), Positives = 434/780 (55%), Gaps = 46/780 (5%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + ++ + Sbjct: 6 DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 65 Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + +Y+ + AR + L +E V+ +Y+ + T + P++ Sbjct: 66 MTIDHSDYSLLAARLAVSNLHKETKDLFFNVIVDMYEAIDQKTGAATPMI-PDF------ 118 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ Sbjct: 119 --------HYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 170 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ + A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + +D + Sbjct: 171 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 227 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQ Sbjct: 228 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 287 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W Sbjct: 288 GGNKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 347 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L D +G EFE YE YE+Q + +++SA LWR ++ ETG P Sbjct: 348 SLMCPMQSPGLADCHGVEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 402 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617 ++ +KD CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D Sbjct: 403 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 462 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +++L + R L+ +ID N + +A++SN +R IG+G+ G A + +PY S Sbjct: 463 FERLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESD 522 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A E+ + E I + A+ AS ELA + G Y ++KGS +G D Sbjct: 523 AAAELNKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------G 573 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 574 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 633 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I Sbjct: 634 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 693 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 A+ R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 694 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWNMGLKTGMYYLRTKPAVNAIQFTV 753 >gi|145497945|ref|XP_001434961.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402089|emb|CAK67564.1| unnamed protein product [Paramecium tetraurelia] Length = 840 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 269/788 (34%), Positives = 441/788 (55%), Gaps = 51/788 (6%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ DG + + +++ ++ S LQ ++ +++ + + MY+G++ L+ + Sbjct: 24 VLKRDGGKQNIDIQKIAERLQNLASNLQHININLIMWKVIQGMYEGITTVQLDNLAAETC 83 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 + P Y+ + AR + L +E + E+ + +Y G A Sbjct: 84 AYMNLVHPQYSLLAARIAVNNLHKET---------SESFSEVATKLHSFTDKY---GRPA 131 Query: 267 RLLHES-----MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 L+ + M + D++ N++ Y+RD+ +++ G + L Y L IE PQ Sbjct: 132 PLIADDVYKIIMENKDII--QNEINYDRDYQYDFFGFKTLERSYLLKEGKKPIERPQQLL 189 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRV++G+ E + A + Y+L+S +F +TPTLFNSGT +PQ+SSCFL + DD + Sbjct: 190 MRVSIGI---HKEDLQSAFQTYHLMSQKYFTHATPTLFNSGTPYPQMSSCFLLDMVDDSI 246 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ A+++K +GG+G + +R ++I GTNG S G++P LKV NDTA V+Q Sbjct: 247 EGIYETLKRCALISKSAGGIGLSASKIRSQDSYIRGTNGISNGLVPMLKVFNDTARYVDQ 306 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KRKG+ YLE WH D+ FL LRKN G + +R D+ WIPDLFM+RV ++ W Sbjct: 307 GGGKRKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDW 366 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TL P+E L D YG+EF Y +YE + + G + + A LW++++ TG P Sbjct: 367 TLMCPNECPGLQDCYGQEFNKLYTDYESK-NMGRVT----MKARQLWQEIIDAQISTGLP 421 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618 ++ +KD CN +S Q+++G + SSNLCTEI +S +E AVCNL SINL ++ FD+ Sbjct: 422 YMLYKDACNSKSNQKNLGTIKSSNLCTEIIQYTSPDEIAVCNLASINLQKLIKEDKTFDF 481 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 DKL + L+ VID+N + +++A+ SN +R IG+G+ GF AL + IP+ S + Sbjct: 482 DKLLEITKIITINLNIVIDLNFYPVKQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSED 541 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A+E+ + E I + A S+ELAQ+ G Y +F GS QG+ D G+ ++ D Sbjct: 542 ALELNAKIFETIYYGACQTSLELAQKLGPYETFTGSPASQGILQFDMWGVSPKLYD---- 597 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W+ LK+ + GMRNS +A PTA+ + I ++S +P N+Y + ++G+ Sbjct: 598 -------WNTLKQNIAKHGMRNSLLIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGE 650 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +N LV++L + +LW + + L ++GS+ NIE IP+++K ++ T +EI ++ Sbjct: 651 FVCINPHLVDDLIELNLWTPQIKNKLIMNNGSVQNIEEIPNNIKSLYKTVWEISQKAILN 710 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT----------TYYLRSRSA 908 A+ R +IDQ+QSLN+++ EP+ K+ ++ A G+K YYLR+R A Sbjct: 711 LATSRAPFIDQSQSLNIHMAEPTMSKVTSMHFYAGRKGVKNRYILYITIKGMYYLRTRPA 770 Query: 909 TSVEKSTL 916 K T+ Sbjct: 771 ADPIKFTV 778 >gi|193669060|ref|XP_001942710.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 1 [Acyrthosiphon pisum] gi|328715730|ref|XP_003245707.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 2 [Acyrthosiphon pisum] Length = 802 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/829 (33%), Positives = 449/829 (54%), Gaps = 58/829 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 KL + DG + ++ M +E+ C GL + + ++ G+S ++ Sbjct: 11 KLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQIDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 ++ L K P++A + AR + L +E V+ +Y + M+ + Sbjct: 71 AAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDVIYDLYNMSNERNQRRMKIISDF 130 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 ++ ++ + L N +K++RD+ + Y G + L Y L ING + Sbjct: 131 HYGVVMKHADR---------------LNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVV 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRV++G+ ++ + A+E Y+L+SS +F ++PT+FN+ T PQLSSCFL Sbjct: 176 ERPQHLLMRVSIGIHGEDIDA---AIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLV 232 Query: 375 TVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVAN 432 D FG ++ A +++ SGG+G + G +S G++ LKV N Sbjct: 233 ANKSDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLN 292 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D A V+QGGKR GAV Y+E WH DV + +LRKNTG+ +T D+ A WIPD FM+R Sbjct: 293 DLAQYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + W+L P + L D++G +F Y+ YE E + R++SA LW +++T Sbjct: 353 VEADQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITS 407 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAH 610 ETG P++ +KD CN +S Q+++G + SNLCTEI +SSEE AVCNL SI N+ Sbjct: 408 QIETGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVK 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N ++D++KL + + L+ VID+N + + +A+ SN HR +G+G+ G L+ Sbjct: 468 -PNGEYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLM 526 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 P+ SPE+ ++ + E + + A+ AS ELA++ G YSS++GS QG+ D + Sbjct: 527 RFPFGSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNV-- 584 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 T WD LK+++ G+RNS +A PTA+ A I G ++SI+P NLY Sbjct: 585 --------KPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLY 636 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F+VVN L+N+L + +LW+E M ++L Y+ GS+ I+ IPD++K+++ T +E Sbjct: 637 YRRTLSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWE 696 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 + +++ A+ R +IDQ+QSLN+++++P+ K+ ++ W GLKT YYLR+R A Sbjct: 697 LSQKIILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAA 756 Query: 910 -----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +V KSTL N T+ N + + S + C +C Sbjct: 757 DPIQFTVNKSTLSS-----NIAIQTEKNDALSMQELVCSLENKDACTMC 800 >gi|330945451|gb|EGH47018.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. pisi str. 1704B] Length = 317 Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust. Identities = 217/316 (68%), Positives = 257/316 (81%), Gaps = 1/316 (0%) Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S+GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMN Sbjct: 1 SKGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMN 60 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIKVFRK 539 TANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE + G+IK+F+ Sbjct: 61 TANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKT 120 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AV Sbjct: 121 IQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAV 180 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL H + + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG Sbjct: 181 CNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLG 240 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G Sbjct: 241 IMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKG 300 Query: 720 VFPIDSIGLLAEVRDE 735 + P+DS +L E R E Sbjct: 301 ILPLDSQQILIEQRGE 316 >gi|259147192|emb|CAY80445.1| Rnr3p [Saccharomyces cerevisiae EC1118] Length = 885 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/737 (35%), Positives = 410/737 (55%), Gaps = 36/737 (4%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ + + P+YA + AR + L ++ T + K + H + Sbjct: 63 VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 ++ +E + ++ ++ +VY +RDF + Y G + L Y L Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +NG E PQ MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+ Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + DD + GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++V N+TA V+QGG KR GA +LE WH D+ +F+D+RK G + R D+ A WIP Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV ++ WTLFSP L D++G EFE Y YER+ RG + I A LW Sbjct: 352 DLFMKRVQEDGSWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +L ETG P++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI Sbjct: 406 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 465 Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L A ++ +++++L + L+ VID N + + +A+ SN HR I LG+ Sbjct: 466 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 525 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G +L +P+ S EA + + E I + AS ELAQ+ G YS+F+GS +G+ Sbjct: 526 QGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 585 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D W+ L+K + G+RNS MA PTA+ + I G ++ Sbjct: 586 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 635 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN +L+ +L +WD++M L +GSI + +P + Sbjct: 636 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 695 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK+++ T +EI +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT Sbjct: 696 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 755 Query: 900 TYYLRSRSATSVEKSTL 916 YYLR+++A++ + T+ Sbjct: 756 MYYLRTQAASAAIQFTI 772 >gi|1710392|sp|P50647|RIR1_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase R1 subunit gi|349792|gb|AAA29755.1| ribonucleotide reductase large subunit [Plasmodium falciparum] Length = 804 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/662 (40%), Positives = 387/662 (58%), Gaps = 27/662 (4%) Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G A L+ + + DF L++ L ++ Y F ++Y G + L Y L IN IE PQ Sbjct: 109 GRPASLISKEVYDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQH 168 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378 MRV++G+ + + +K A+E Y+L+S +F +TPTLFNSGT PQ+SSCFL ++ D Sbjct: 169 LLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKAD 225 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GIF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V NDTA V Sbjct: 226 SIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYV 285 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFMKRV +N Sbjct: 286 DQGGGKRKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENK 345 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+E L + +G+EFE Y YE + + G+ + + A LW +L ETG Sbjct: 346 NWTLMCPNECPGLSETWGEEFEKLYTKYEEE-NMGK----KTVLAQDLWFAILQSQIETG 400 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQ 615 P +KD CN + P +++G + SNLC EI +S +E AVCNL SI L + Sbjct: 401 VPIYLYKDSCNAK-PIKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKE 459 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++ KL + R LD +I+ N + +++AK SN HR IG+G+ G LL Y Sbjct: 460 FNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYE 519 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S A E+ E + + A+ SV+ Q G Y S++GS QG+ D A+V ++ Sbjct: 520 SDAAKELNKRIYETMYYAALEMSVDWLQS-GPYESYQGSPGSQGILQFDMWN--AKVDNK 576 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WDELK ++ G+RN +A PTA+ + I G ++S +P N+Y + + Sbjct: 577 Y-------WDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVL 629 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN L+ +L R LWDE M L H+GSI I IPDDLK+++ T +EI Sbjct: 630 SGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKN 689 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++AT K Sbjct: 690 IIDMAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKF 749 Query: 915 TL 916 T+ Sbjct: 750 TV 751 >gi|294941788|ref|XP_002783240.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|239895655|gb|EER15036.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] Length = 792 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 285/787 (36%), Positives = 435/787 (55%), Gaps = 51/787 (6%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + + + +Y G++ ++L++ + + + P+++ + AR + L Sbjct: 41 ITQKVAEGIYPGVTTTELDSLAAETCAYMSQVHPDFSTLAARIAVSNL------------ 88 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND-----LKYERDFAFEY 295 K TH E + G + L+ E + ++LV + D + Y+RDF ++Y Sbjct: 89 HKNTHESFSETVTELYNITDSRGRSSPLVSEEV--YNLVLMNADKLDKAIDYDRDFDYDY 146 Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 G + L Y L + IE PQ MRVA+G+ + + A+E Y L+S+ F Sbjct: 147 FGFKTLERSYLLKRPSDKTCIERPQHMIMRVAVGIHGDDVDA---AIETYALMSTRVFTH 203 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTLFNSGT HPQ+SSCFL ++ +D + GI+ L++ AM++K +GG+G T +R + Sbjct: 204 ATPTLFNSGTPHPQMSSCFLLSIKEDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATES 263 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G++P L+V NDTA V+QGG KRKG+ YLE WH DV EFLDL+KN G Sbjct: 264 YIRGTNGFSNGIVPMLRVFNDTARYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGK 323 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + R D+ A WIPDLFMKRV N WTLF P+E L D YG EFE YE YE+ Sbjct: 324 EEHRARDLFYALWIPDLFMKRVMANGDWTLFCPNEAPGLQDTYGDEFEALYEKYEKDG-- 381 Query: 532 GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 + RK + A +LW K+L ETG P++ +KD N +S Q+++G + SNLC EI Sbjct: 382 ----IGRKTVKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIE 437 Query: 591 NSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 +S +E AVCNL SI N+ +D+ +L + + L+ VID N + + +A+K Sbjct: 438 YTSPDEVAVCNLASIALNMFVDKKTRTYDFGRLHRVAKVVTKNLNKVIDRNYYPVPEARK 497 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 SN HR IG+G+ G A L+ PY SPEA+++ ++ E I A AS+ELA+ G Y Sbjct: 498 SNMRHRPIGIGVQGLADAFLLMRFPYESPEALKLNNDIFETIYHAACEASMELAKRDGPY 557 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F+GS +G+ D + + + R W LK+ VK GMRNS +A P Sbjct: 558 ETFQGSPASEGILQFDMWDVTPD---------SGRWDWASLKEEVKKNGMRNSLLIAPMP 608 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TA+ A I G +++ +P QN+YV+ ++G+F VN LV++L + LW++ + + Sbjct: 609 TASTAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKK 668 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 GS+ +E IP +++ ++ T +EI +++ A+ R +IDQ+QSLN+++ + KL + Sbjct: 669 GSVQGVEEIPMEIQALYRTVWEIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSM 728 Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 + W +GLKT YYLR+++A + TL D K V V P S P D Sbjct: 729 HFYGWKLGLKTGQYYLRTKAAADAIQFTL---DAK--KVTVESPLKPRSSPLKPQYVQED 783 Query: 948 TE-CEVC 953 E C C Sbjct: 784 EETCIAC 790 >gi|294471336|gb|ADE80919.1| RR1 [Spodoptera litura NPV] Length = 778 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 264/780 (33%), Positives = 430/780 (55%), Gaps = 46/780 (5%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + ++ + Sbjct: 6 DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 65 Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + +Y+ + AR + L E V+ +Y+ + T + Sbjct: 66 MTIDHSDYSLLAARLAVSNLHNETKDLFFNVIVDMYEAIDQKTGAATPMISD-------- 117 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ Sbjct: 118 -------FHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 170 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ + A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + +D + Sbjct: 171 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 227 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQ Sbjct: 228 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 287 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W Sbjct: 288 GGNKRPGAFAVYVEPWHADVSDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 347 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L D +G EFE YE YE+Q + +++SA LWR ++ ETG P Sbjct: 348 SLMCPMQSPGLADCHGVEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 402 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617 ++ +KD CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D Sbjct: 403 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 462 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +++L + R L+ +ID N + +A++SN +R IG+G+ G A + +PY S Sbjct: 463 FERLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESD 522 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A E+ + E I + A+ AS ELA + G Y ++KGS +G D Sbjct: 523 AAAELNKKIFETIYYGALEASCELAAKDGPYETYKGSRASRGELQYDMWN---------G 573 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 574 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 633 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I Sbjct: 634 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 693 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 A+ R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 694 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNAIQFTV 753 >gi|557803|emb|CAA86157.1| rir3 [Saccharomyces cerevisiae] gi|323304492|gb|EGA58258.1| Rnr3p [Saccharomyces cerevisiae FostersB] Length = 885 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/737 (35%), Positives = 410/737 (55%), Gaps = 36/737 (4%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ + + P+YA + AR + L ++ T + K + H + Sbjct: 63 VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 ++ +E + ++ ++ +VY +RDF + Y G + L Y L Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +NG E PQ MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+ Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + DD + GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++V N+TA V+QGG KR GA +LE WH D+ +F+D+RK G + R D+ A WIP Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV ++ WTLFSP L D++G EFE Y YER+ RG + I A LW Sbjct: 352 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +L ETG P++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI Sbjct: 406 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 465 Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L A ++ +++++L + L+ VID N + + +A+ SN HR I LG+ Sbjct: 466 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 525 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G +L +P+ S EA + + E I + AS ELAQ+ G YS+F+GS +G+ Sbjct: 526 QGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 585 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D W+ L+K + G+RNS MA PTA+ + I G ++ Sbjct: 586 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 635 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN +L+ +L +WD++M L +GSI + +P + Sbjct: 636 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 695 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK+++ T +EI +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT Sbjct: 696 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 755 Query: 900 TYYLRSRSATSVEKSTL 916 YYLR+++A++ + T+ Sbjct: 756 MYYLRTQAASAAIQFTI 772 >gi|294471317|gb|ADE80903.1| RR1 [Spodoptera litura NPV] Length = 772 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 264/780 (33%), Positives = 431/780 (55%), Gaps = 46/780 (5%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + ++ + Sbjct: 11 DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 70 Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + +Y+ + AR + L +E V+ +Y+ + T + Sbjct: 71 MTIDHSDYSLLAARLAVSNLHKETKDLFFNVIVDMYEAIDQKTGAATPMISD-------- 122 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ Sbjct: 123 -------FHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 175 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ + A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + +D + Sbjct: 176 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 232 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQ Sbjct: 233 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 292 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W Sbjct: 293 GGNKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 352 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L D +G EFE YE YE+Q + +++SA LWR ++ ETG P Sbjct: 353 SLMCPMQSPGLADCHGVEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 407 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617 ++ +KD CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D Sbjct: 408 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 467 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +++L + R L+ +ID N + +A++SN +R IG+G+ G A + +PY S Sbjct: 468 FERLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESD 527 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A E+ + E I + A+ AS ELA + G Y ++KGS +G D Sbjct: 528 AAAELNKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------G 578 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 579 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 638 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I Sbjct: 639 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 698 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 A+ R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 699 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 758 >gi|156541405|ref|XP_001600772.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 797 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 280/799 (35%), Positives = 431/799 (53%), Gaps = 58/799 (7%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKN-MYDGLSESDLETA 201 K+ ++ +G N ++ + + C GL D + +++ N +Y G+ +L+ Sbjct: 6 KMHVLKRNGFKQEVNFDKITQRIRKLCHGLNMDYIDPLAITQCVINGLYPGVKTVELDNL 65 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254 + T+ K P+YA + AR ++ L +E V+ +YK T + E Sbjct: 66 AAEIAATMTTKHPDYAILAARIVISSLHKENRKTFSEVMDDLYKVIDPITKEHKPMISEE 125 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 Y I + K RL S +D+D RDF F Y G + L Y ING + Sbjct: 126 Y--NNIIQKHKDRL--NSAIDYD-----------RDFVFNYFGFKTLEKSYLFRINGQVV 170 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP------QL 368 E PQ MRVA+ L ++ EK +E YN S +F ++PTLF P Sbjct: 171 ERPQDMLMRVAVALHKEDLEK---VIETYNYTSERYFTHASPTLFFCMYYTPTNVQVKNT 227 Query: 369 SSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 S CF LT + D + GIF L+ A+++K +GG+G +R G I NG + G++P Sbjct: 228 SDCFILTMIEDSIEGIFETLKRCAIISKSAGGIGISVHNIRAKGTAIASNNGFANGLVPM 287 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++V N+T ++QGG KR GA YLE WH D+ EFLDL+KN G + R ++ A WIP Sbjct: 288 IRVFNNTVRFIDQGGNKRPGAFALYLEPWHADIFEFLDLKKNIGKEEYRARELFYALWIP 347 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFM+RV N W+L P E L D++G EF Y YE E + R+I A LW Sbjct: 348 DLFMQRVLDNEKWSLMCPHECPGLPDVWGDEFNKLYIKYEE-----EKRYKRQIVARDLW 402 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI- 605 +L ETG P++ +KD CN +S QQ++G + SSNLCTEI SS E AVCNL SI Sbjct: 403 TAILKAQVETGTPYMLYKDHCNRKSNQQNLGTIKSSNLCTEIIQYSSPNEVAVCNLASIA 462 Query: 606 -NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 N+ +++ KL ++T + LD +ID+N + + +A+KSN HR +G+G+ G Sbjct: 463 VNMFVDVETQYYNFLKLKEVVKTVAKNLDKIIDLNHYPLIEAEKSNLMHRPVGIGVQGLA 522 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 A L+ P+ S EA ++ + E + F A+ AS ELA+E G YSS+ GS +G+ D Sbjct: 523 DAFLLMRYPFESKEAQQLNIQIFETLYFGALEASCELAKENGPYSSYNGSPVSKGILQYD 582 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + T+ W LK ++ G+RNS +A PTA+ A I G ++S++P Sbjct: 583 MWNVTP----------TNLWDWAALKLKIAKYGVRNSLLLAPMPTASTAQILGNNESVEP 632 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 N+Y + +SG+F +VN L+N+L +R+LWD+ M +++ ++GSI N+ I DLK++ Sbjct: 633 YTSNIYTRRVLSGEFIIVNPHLLNDLTKRNLWDDEMKNEIIANNGSIQNVGHITQDLKEL 692 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903 + T +EI +++ A+ R +IDQ+QS+N+++ +P+ +KL ++ W GLKT YYL Sbjct: 693 YKTVWEIPQKIILKMAADRGAFIDQSQSVNVHMAKPTTEKLTSMHFYGWKAGLKTGMYYL 752 Query: 904 RSRSAT-----SVEKSTLK 917 R++ A +V KS L+ Sbjct: 753 RTKPAANALQFTVNKSLLR 771 >gi|6322123|ref|NP_012198.1| Rnr3p [Saccharomyces cerevisiae S288c] gi|730516|sp|P21672|RIR3_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 2; AltName: Full=Ribonucleotide reductase DNA damage-inducible regulatory subunit 2; AltName: Full=Ribonucleotide reductase R1 subunit 2; AltName: Full=Ribonucleotide reductase large subunit 2 gi|151943097|gb|EDN61432.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces cerevisiae YJM789] gi|285812585|tpg|DAA08484.1| TPA: Rnr3p [Saccharomyces cerevisiae S288c] Length = 869 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/737 (35%), Positives = 410/737 (55%), Gaps = 36/737 (4%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ + + P+YA + AR + L ++ T + K + H + Sbjct: 47 VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 105 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 ++ +E + ++ ++ +VY +RDF + Y G + L Y L Sbjct: 106 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 158 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +NG E PQ MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+ Sbjct: 159 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 215 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + DD + GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP Sbjct: 216 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 275 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++V N+TA V+QGG KR GA +LE WH D+ +F+D+RK G + R D+ A WIP Sbjct: 276 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 335 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV ++ WTLFSP L D++G EFE Y YER+ RG + I A LW Sbjct: 336 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 389 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +L ETG P++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI Sbjct: 390 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 449 Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L A ++ +++++L + L+ VID N + + +A+ SN HR I LG+ Sbjct: 450 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 509 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G +L +P+ S EA + + E I + AS ELAQ+ G YS+F+GS +G+ Sbjct: 510 QGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 569 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D W+ L+K + G+RNS MA PTA+ + I G ++ Sbjct: 570 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 619 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN +L+ +L +WD++M L +GSI + +P + Sbjct: 620 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 679 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK+++ T +EI +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT Sbjct: 680 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 739 Query: 900 TYYLRSRSATSVEKSTL 916 YYLR+++A++ + T+ Sbjct: 740 MYYLRTQAASAAIQFTI 756 >gi|225850106|ref|YP_002730340.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella marina EX-H1] gi|225645946|gb|ACO04132.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella marina EX-H1] Length = 804 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 271/732 (37%), Positives = 400/732 (54%), Gaps = 63/732 (8%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+T ++ + LI K Y + A+ LL+ + RE+ Sbjct: 55 VTTQELDTLVLKAIEQLIPKHYIYDTLAAKQLLKLINREIDKRFSS-------------- 100 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 F IE GV L ++DFDL L + L Y RD +Y G+ L DRYF G Sbjct: 101 ---FKEAIEFGVNENLYKPELLDFDLDRLEDALDYSRDALLDYFGMTTLKDRYFTRDREG 157 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 + IE PQ FFMRVAMG+ E E ++ YN +S ++ STPTL+NSGT Q SSC Sbjct: 158 NIIEKPQWFFMRVAMGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSC 213 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 ++ + D L I +E A LAKY+GG+G D T +R G+ IH N KS GVIPF+K+ Sbjct: 214 YVNVIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGVIPFIKIF 273 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + A+ QGG+R+ + YL+ WH+D++ FLDLR+ TG+ RT +NTA W+PD M+ Sbjct: 274 DTIVNAIQQGGRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAVWMPDEIMR 333 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 R+ + LF P E +L +G+EF Y +A+ G +K+++KI + + + L Sbjct: 334 RIKEGEPLYLFDPAECPELVTAWGEEFTKKYFECIEKAETGHLKLWKKIDSREWFNRYLF 393 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 L +TGHPW+TFKD N +P GV++SSNLCTEI++ +S E TAVC L S+NL H Sbjct: 394 KLAKTGHPWLTFKDRHNEHNPCPEYGVINSSNLCTEISIPNSPESTAVCTLASVNLAKHL 453 Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 ++ D+DKL TI T V LDN++D N + E+++K+ R +G+GLMGF L Sbjct: 454 NEDRTDIDWDKLKDTIETMVLALDNILDKNFYPSEESRKNTMDLRPLGIGLMGFAETLVE 513 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L IPY S AVE A++ +F+ A S ELA+ERG + + Sbjct: 514 LGIPYDSDTAVEFAEKVAKFMRDTAYRKSEELAKERGPFPHY------------------ 555 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGM---RNSNCMAIAPTATIANICGVSQSIDPSY 786 +E+K++ K RN+ +AIAPTA+I+ I G + SID + Sbjct: 556 -----------------EEMKEKGKPYPYPPRRNAVLLAIAPTASISIIAGTTSSIDSYF 598 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIH 845 N++ + +SG F VVN L+ +L++ D+W+E M +K H GS+ I+ + + K++ Sbjct: 599 SNVFSRDTLSGKFIVVNKQLMKKLEELDMWNEEMAEKIKAHGGSVQFIDELEGKIDKRLF 658 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI P I+ A+ QK++DQA S ++Y++E + IY AW GLK+TYY Sbjct: 659 KGAYEIHPFRQIDIAAAFQKYVDQAVSKSIYIEEELRGDMFDIYMYAWEKGLKSTYYCFI 718 Query: 906 RSATSVEKSTLK 917 EK T K Sbjct: 719 DKTVKGEKYTQK 730 >gi|126327914|ref|XP_001363871.1| PREDICTED: similar to LOC505537 protein [Monodelphis domestica] Length = 804 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 290/813 (35%), Positives = 447/813 (54%), Gaps = 57/813 (7%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL + V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMEFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L +E +K M+ LY Y Y + ++ +S +D V LAN Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-NYINPY--NSKHSPMVAKSTLD---VVLAN 127 Query: 284 D------LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ + + Sbjct: 128 KDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKDDIDA-- 185 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K Sbjct: 186 -AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKS 244 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE W Sbjct: 245 AGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPW 304 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H+DV EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L D++G Sbjct: 305 HLDVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMCPNECPGLDDVWG 364 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ+ Sbjct: 365 EEFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQN 419 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDN 634 +G + SNLCTEI +S +E AVCNL S+ L + +D+ KLA + VR L+ Sbjct: 420 LGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTLEHTYDFKKLAEVTKVIVRNLNK 479 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + + E I + A Sbjct: 480 IIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGA 539 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS ELA+E G Y +++GS +G+ D + T W LK+++ Sbjct: 540 LEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKVLKEKIA 589 Query: 755 TI---GMRNSNCMAIA---PTATIANICGVSQSIDPSYQNLYVKSN------MSGDFT-V 801 G+RN + P+ + S+ + P +L + +S F + Sbjct: 590 KYLDGGIRNELLITAGHYKPSTNTLSFLSNSEFLSPKLGSLGLSYTCSFYCFISHHFVQI 649 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L +R LW+E M + + +GSI +I IP+DLK+++ T +EI +++ A+ Sbjct: 650 VNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAA 709 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 710 DRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEK 769 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + D ++ + S + EC +C Sbjct: 770 LKEKEKVLKDEEKERNTAAMVCSLENRDECLMC 802 >gi|188996382|ref|YP_001930633.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931449|gb|ACD66079.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 850 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/707 (37%), Positives = 387/707 (54%), Gaps = 72/707 (10%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 F YI V +LL +++FD+ L + + Y RD +Y GL L DRY N I Sbjct: 105 FKDYINYAVNEKLLKPELLNFDIDLLESKIDYSRDNNLDYFGLSTLKDRYLTKDRNFETI 164 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FFMRVAMG+ E E ++ Y+ LS+ ++ STPTLFNSGT Q SSC++ Sbjct: 165 EKPQWFFMRVAMGIGNTEEE----ILKIYDKLSNLEYLHSTPTLFNSGTLTNQYSSCYVN 220 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D L I +E A LAKY+GG+G D T +R G+ IH N KS G+IPF+K+ + Sbjct: 221 VVDDSLESIMDKAKETAFLAKYAGGVGTDITRIRATGSKIHSLNAKSSGIIPFIKIFDTI 280 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 A+ QGG+R+ + YL+ WH+DVE FLDLR+ TG+ RT +NTA W+PD M+R+ Sbjct: 281 VNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDEIMRRIK 340 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + LF P E +L YG+EF Y+ +A+RGE+++++KI + ++K L L Sbjct: 341 EGEPIYLFDPAECRELVTSYGEEFAKKYQECIEKAERGELELWKKIDSRDFYKKYLFKLA 400 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611 +TGHPW+TFKD N +P V++SSNLCTEI++ +S + TAVC L S+NL H Sbjct: 401 KTGHPWLTFKDAHNRHNPCPKYSVINSSNLCTEISIPNSPQSTAVCTLASVNLARHLKKV 460 Query: 612 --------------------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 + D+DKL T+ T V LDN++D N + E+ Sbjct: 461 ERETSDVKREELSPNEKNTSHLLTYSPTHSIDWDKLKDTLETMVVALDNILDKNFYPSEE 520 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++K+ R IG+GLMGF AL L IPY S EA+E+A E +F+ S ELA+ER Sbjct: 521 SRKNTMDLRPIGIGLMGFHEALIYLGIPYDSDEAIELAKEIAKFMRETVYRKSEELAKER 580 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-------- 757 GA+ + E++ + ++ +EL KT Sbjct: 581 GAFPHYY----------------------EVSKRESEKVKSEELNPNEKTPTHLLTYSPT 618 Query: 758 -------MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 RN+ +AIAPTA+I+ I G S SID + N++ + +SG F VVN L+ L Sbjct: 619 HPYNYPPRRNAVLLAIAPTASISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKML 678 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQ 869 +++ +W+E M+ +K + GSI I+ + + K++ TA+E+ P I+ A+ Q++IDQ Sbjct: 679 EEKGIWNEEMLEKIKANQGSIQYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQ 738 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 A S +LY++E ++ IY AW GLK+TYY EK T+ Sbjct: 739 AVSKSLYIEEDLRDDMENIYMYAWEKGLKSTYYCFIDKTIKGEKYTM 785 >gi|298711866|emb|CBJ32887.1| ribonucleotide reductase large chain subunit [Ectocarpus siliculosus] Length = 797 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/770 (34%), Positives = 432/770 (56%), Gaps = 37/770 (4%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ DG + + ++ + C GL V ++ + +Y G++ S+L+ Sbjct: 3 VIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQ 62 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + P+ + + AR + L + T + K + H + E +E Sbjct: 63 TAAYQATQHPDMSLLAARISVSNLHKCTWKT-FSKTIEMLHTYVLPQTGERSSLISDEVF 121 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + + ++ ++D + ++ ERDF ++Y G + L Y L NG +E Q MRV Sbjct: 122 RIVMENKEVLD-------SAIQDERDFEYDYFGFKTLEKSYLLRANGFVVERIQHMLMRV 174 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383 A+G+ + + A+E Y+L+S F ++PTLFN+GT PQLSSCFL V +D + GI Sbjct: 175 AIGIHQTDIDS---AIESYDLMSQRLFTHASPTLFNAGTPRPQLSSCFLLNVKEDSIEGI 231 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 + L++ A ++K++GG+G +R +++ G+NG S G++P L+V NDTA V+QGG Sbjct: 232 YDTLKQCACISKFAGGIGVSIHSIRATDSYVAGSNGSSNGLVPMLRVFNDTARYVDQGGG 291 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKG+ Y E WH D+ FLDLRKN G++ R D+ A WIPDLFMKRV + W+LF Sbjct: 292 KRKGSFAMYREPWHADIFAFLDLRKNHGNELERARDLFYALWIPDLFMKRVEADGDWSLF 351 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P+E L D++G EFE Y++YE + R I A LW ++ ETG P++ Sbjct: 352 CPNEAPGLPDVFGDEFEALYKSYEAKG-----LARRSIKARQLWVAIMDAQVETGTPYML 406 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FD 617 FKD CN +S Q+++G + SSNLCTEI + +E AVCNL SI+L A + + FD Sbjct: 407 FKDACNSKSNQKNLGTIKSSNLCTEIIEYTDPDEVAVCNLASISLPAFVSAGEDGQPAFD 466 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + +L + R L+ VID+N + +E+AK+SN HR +GLG+ G A ++ P+ S Sbjct: 467 FHRLYEVTKVVTRNLNRVIDVNFYPVEEAKRSNFRHRPVGLGVQGLADAFIMMRFPFESE 526 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ + E I F A+ ASVELA+++G Y +++GS QG+ D G+ Sbjct: 527 KAAKLNRDIFETIYFGAVEASVELAEKQGTYETYEGSPASQGLLQYDMWGVTP------- 579 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + R W LK ++ G+RNS +A PTA+ A I G ++S++P N+Y + ++G Sbjct: 580 ---SDRWDWAGLKAKMAQHGLRNSLLLAPMPTASTAQILGNNESVEPFTSNMYNRRVLAG 636 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+ +L R LW ++ + + GS+ ++ IP DLK ++ T +EI +I Sbjct: 637 EFAVVNKHLLRDLTTRGLWTPSVRNQIIADQGSVQRVD-IPQDLKDLYKTVWEIKQKVVI 695 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 + ++ R +I Q+QS+N+++ +P+ KL ++ +W GLKT YYLR++ Sbjct: 696 DMSADRGAFICQSQSMNVHMADPTQGKLTSMHFYSWKKGLKTGMYYLRTK 745 >gi|241958750|ref|XP_002422094.1| ribonucleoside-diphosphate reductase, large subunit, putative [Candida dubliniensis CD36] gi|223645439|emb|CAX40095.1| ribonucleoside-diphosphate reductase, large subunit, putative [Candida dubliniensis CD36] Length = 816 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 282/797 (35%), Positives = 439/797 (55%), Gaps = 49/797 (6%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALI 203 KI + G F+S ++ ++EEA L D+ ++ + + L+ +L T A + Sbjct: 3 KIKVLSGEEEEFDSVKIHKLLEEASFNLGDLDLDQLVESVQRGLPSTLTIEELYTFIAEV 62 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +SR + PNYA + R KL +V + ++ +K E + P Y Sbjct: 63 IASRVIYH--PNYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRESKSYSPISSAFY- 119 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 +++ + FD V + RD + Y G++ L Y L + G E+PQ Sbjct: 120 ------KVVKKHGEFFDKV-----IDKTRDSSLTYFGIKTLESSYLLKMGGEVAELPQYL 168 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 FMRVA+G+ + VE Y+L+S +F+ ++PTL+N+G+ LSSCFL + +D Sbjct: 169 FMRVAIGIHQNDLNA---IVETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKEDS 225 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GIF L E A+++K SGG+G +R GA+I GTNG S G++P L+V N+TA V+ Sbjct: 226 IDGIFKTLNEAALISKASGGIGIHVHNIRSNGAYIAGTNGSSNGLVPMLRVYNNTARYVD 285 Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG KR GA Y+E WH D+ + L++RKN G++ RT D+ WIPDLFMKRV N+ Sbjct: 286 QGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKDNSD 345 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSP+E L D+YG+EFE Y YE + K+SA LW +L ETG Sbjct: 346 WTLFSPNEALGLSDVYGEEFEKLYCKYESEG------FGTKVSAHKLWLAILQSQTETGG 399 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615 P++ +KD CN +S Q+++G + SSNLC EI SS EETAVCNL S+ L + + Sbjct: 400 PYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPEETAVCNLASLALPTYLKTTEDAI 459 Query: 616 -FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 FD++KL S + R L+ VID+ + ++ A+ SN HR I LG+ G L +P+ Sbjct: 460 AFDFEKLHSVTKVLTRNLNKVIDVTKYPVKTAEYSNKRHRPIALGVQGLADLFAELRLPF 519 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S A + + E I A+ ASVELA + G Y +F+GS G+ D Sbjct: 520 DSAMAKTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASNGILQFD---------- 569 Query: 735 ELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++ S + W+ LK ++ G+RNS +A PTA+ + I G ++ +P NLY + Sbjct: 570 -MWNHKPSPMYDWNALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRR 628 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 ++G++ +VN +L+ +L +WD AM + + +GSI I IPD++K+++ T +E+ Sbjct: 629 VLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQKIPNIPDEIKQLYKTVWELSQ 688 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +I+ A+ R K++DQ+QS+N++L P+ KL + AW GLKT YYLR+++A+ Sbjct: 689 KVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAI 748 Query: 913 KSTLKGVDGKL--NAVP 927 + T+ + + N VP Sbjct: 749 QFTVDASEAEKAGNKVP 765 >gi|126131606|ref|XP_001382328.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces stipitis CBS 6054] gi|126094153|gb|ABN64299.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces stipitis CBS 6054] Length = 861 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 273/763 (35%), Positives = 428/763 (56%), Gaps = 41/763 (5%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V+ C GL V + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VQRLCYGLDPNHVDAVAITQRVISGVYHGVTTIELDNLAAETAAYMTTIHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280 + L ++ T Y K + + + G+ + ++ + D L + Sbjct: 82 AVSNLHKQT-TKQYSSVSKELYDYINP----------KTGLHSPMISKETYDIILKHTDE 130 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ + EK + Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAIGIHGDDIEK---VI 187 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNL+S F +PTLFN+GT PQ+SSCFL + DD + GI+ L+ A+++K +GG Sbjct: 188 ESYNLMSQRLFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSIDGIYDTLKTCALISKSAGG 247 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G +R GA+I GTNG S G+IP ++V N+TA V+QGG KR GA YLE WH D Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+D+RKN G + R D+ A WIPDLFMKRV QNA WTLFSP+E L D+YG EF Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNADWTLFSPNEAPGLADVYGDEF 367 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE + +RG I A LW +L ETG P++ +KD CN +S Q+++G+ Sbjct: 368 EELYER-YERENRGR----STIKAQKLWYSILEAQTETGTPFMLYKDACNKKSNQKNLGM 422 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634 + SSNLC EI SS EE AVCNL SI L + + ++++KL + + L+ Sbjct: 423 IKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDDSSLWYNFEKLHEVTKVVTKNLNK 482 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +ID N + + +A++SN +R I LG+ G L +P+ S +A E+ + E I A Sbjct: 483 IIDRNYYPVPEARRSNMRNRPIALGVQGLADTFMALRLPFDSQQARELNIQIFETIYHAA 542 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + +S+ELAQ G Y S++GS +G+ D L EL WD LK+ + Sbjct: 543 VESSIELAQIEGPYESYEGSPASKGLLQYD---LWDRKPTEL-------WDWDTLKQNLS 592 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L+ +L Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W++AM +++ ++GS+ + +PD++K ++ T +EI +I+ A+ R +IDQ+QSLN Sbjct: 653 IWNDAMKNNIIANNGSVQGLANVPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +++ +P+ KL ++ W GLKT YYLR+++A + + T+ Sbjct: 713 IHIKDPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAAAAIQFTV 755 >gi|322815075|gb|EFZ23824.1| ribonucleoside-diphosphate reductase large chain, putative [Trypanosoma cruzi] Length = 731 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 276/751 (36%), Positives = 424/751 (56%), Gaps = 44/751 (5%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198 +A L + DG+L SF++ +L +E GL V KI+ ++D +S +L Sbjct: 2 LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + + ++ + K P+Y + R + L + +V + H++ Sbjct: 62 DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLETFSILHKHKIH--------- 112 Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313 + G A LL + + + + L + Y+RD FE+ G + L Y L ++ R Sbjct: 113 --DTGRAAPLLSDEVWEIVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGE 170 Query: 314 ---IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E PQ F+RVA+G+ ++ E+ K E Y+ +S +F +TPTLFN+GT PQ+SS Sbjct: 171 REIAERPQQMFLRVALGIHGEDMERVK---ETYDHMSLGYFTHATPTLFNAGTPFPQMSS 227 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL + +D + GI+ L++ A+++K +GG+G +R G++I GTNG+S G++P L+ Sbjct: 228 CFLVAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLR 287 Query: 430 VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 V N+TA V+QGG KRKGA YLE WH D+ FL L+KNTG + R D+ A WIPDL Sbjct: 288 VWNNTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDL 347 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV WTL P L D YG +F+ YE YER+ +RG + + A +LW Sbjct: 348 FMERVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYERE-NRG----VKTVQAQSLWFA 402 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 +L + ETG P++ +KD CN +S Q++VGV+ SNLCTEI +S +E AVCNL SI L Sbjct: 403 ILELQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASI-AL 461 Query: 609 AHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 F + + +D+ +L + + L+ VID N + + ++++SN +R IG+G+ G Sbjct: 462 PRFVDKERKIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMAD 521 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L+ +P+ EA + ++ E I + A+ ASVELA+ G Y+ F GS QG D Sbjct: 522 TFILMRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFD- 580 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 L E + R+ R WD LKKR+ GMRNS +A PTA+ + I G ++ +P Sbjct: 581 ---LWEQKP-----RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPF 632 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N+YV+ +SG+F VVN +LV +L +R LW+E M + + ++GS+ NI IP+DLK+++ Sbjct: 633 TSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELY 692 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +EI LIE A R K+IDQ+QSLNL+ Sbjct: 693 RVVWEIRQKDLIEMAVDRGKFIDQSQSLNLF 723 >gi|255713718|ref|XP_002553141.1| KLTH0D09922p [Lachancea thermotolerans] gi|238934521|emb|CAR22703.1| KLTH0D09922p [Lachancea thermotolerans] Length = 867 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 281/747 (37%), Positives = 421/747 (56%), Gaps = 47/747 (6%) Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 LL+KLR K+ + +T H + L F + L +++ +D Sbjct: 105 LLQKLRSSSKAPTVKRHKTSTSHNDKNLISAAF-------YEMALRYQTTLD-------A 150 Query: 284 DLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-E 341 ++ +RDF F Y G + L Y + N E PQ FMRVA LA+ + AV E Sbjct: 151 AIQPDRDFDFSYFGWKTLSKSYLIKRKNEETHETPQFLFMRVA--LAIHGPRGDIDAVLE 208 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGL 400 Y+L+S F+ ++PTLFN+GT + LSSCFL + D + GI+ L + AM++K SGG+ Sbjct: 209 TYDLMSRKFFIHASPTLFNAGTVNQYLSSCFLVAMIEDSIDGIYRTLHKTAMISKASGGV 268 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459 G + VRG GA+I G+NG S G++P L+V N+TA V+QGG KR GA C YLE WH DV Sbjct: 269 GVHVSNVRGTGAYISGSNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFCIYLEPWHSDV 328 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FL LRKN G + R D+ A WIPDLFM+RV QN W LFSPDE L + +G+EF+ Sbjct: 329 LDFLQLRKNQGKEELRARDLFLALWIPDLFMERVEQNGSWCLFSPDEAPGLQECFGEEFK 388 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 YE YE+ + +K+ A LW ++L ETG P++ +KD CN +S Q+++G + Sbjct: 389 KLYETYEKT-----LAPAKKMPAQKLWSEILQSQVETGGPFMLYKDSCNNKSNQKNLGTI 443 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634 SSNLC EI SS ETAVCNL S+ L F Q FD++ L ++ + LD+ Sbjct: 444 KSSNLCCEIVQYSSPSETAVCNLASV-ALPSFVKLQREQAIFDFESLHKIVKVLTKNLDS 502 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VIDI + +E AK SN +R I +G+ G AL +L IP+ S A + + E I A Sbjct: 503 VIDICDYPVEDAKFSNEKNRPIAIGVQGLADALMILRIPFHSESARVLNKQIFETIYHAA 562 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + S+E +++ G Y SF S +G F D GL + + L + W E++++VK Sbjct: 563 VETSIERSKKLGPYPSFDNSPVSRGEFQFDLWGLNDDNYEFLFSD------WKEMREKVK 616 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS + PTA+ + I G ++S +P N+Y + +SG+FTV+N ++V++ + Sbjct: 617 QHGIRNSLLVGPMPTASTSQILGFTESFEPMTSNIYTRRVLSGEFTVINKYMVDDFCRLG 676 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +W+E + + + +GSI IE IP +LK+++ T +EI +I+ ++ R +IDQ+QSLN Sbjct: 677 IWNEKLKNRIIEQNGSIQGIEGIPSNLKELYRTVWEIPQRVMIDLSADRGPFIDQSQSLN 736 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV------EKSTLKGVDGKLNAVP 927 L+L EP+ KL ++ W GLKT YYLR+++A+ +++TL+G + Sbjct: 737 LFLREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASGAIKFTINQENTLRGAVSIRKGLE 796 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + H PSSC +V + Sbjct: 797 VKQLSVFGH---YPSSCKPHLHIKVAK 820 >gi|319955827|ref|YP_004167090.1| ribonucleoside-diphosphate reductase class ia alpha subunit [Nitratifractor salsuginis DSM 16511] gi|319418231|gb|ADV45341.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Nitratifractor salsuginis DSM 16511] Length = 791 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/834 (35%), Positives = 430/834 (51%), Gaps = 128/834 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + + +++ A GL VS + + D +S +++ LI Sbjct: 2 IKVVKRNGRVEPLDVSKIQKYTSAAVEGLDGVSQSELEVDAKLQFRDMISTEEIQLTLIK 61 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ +PN+ V AR L +Y K T + +YF R +EG Sbjct: 62 TAVDKIDIDQPNWTFVAARLFL--------YDIYHKVSGFTGY---IHLRDYFDRGEKEG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L +DL L + +K ERD F YLG++ LYDRY L G IE+PQ FM Sbjct: 111 ---RILLGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRQGQPIELPQHLFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 VAM LA E + + A +FY++LS F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 AVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTTRHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF +E A+L+K+ GG+G DWT VRG+G++I G + G++PFLK+AND A+AV+Q G Sbjct: 228 IFDGYKEMALLSKFGGGIGWDWTQVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WHIDV +FLDL+KN+G++RRR HD+ A WI DLFMKRV ++ WTLF Sbjct: 288 TRKGAIAVYIEPWHIDVRDFLDLKKNSGEERRRAHDLFPALWINDLFMKRVQEDGIWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P EV +L DLYG+EFE Y E + D K +SA LW+++L FETG+P++ Sbjct: 348 DPYEVKELTDLYGEEFEKRY--LELEQDESITK--EVVSAKQLWKEVLRSYFETGNPFLC 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----D 617 FKD N +P +H GV+ SSNLCTEI N+S + + + +F + Sbjct: 404 FKDAANRANPNRHAGVIRSSNLCTEIFQNTSPNHYRMKIIFEDQSVTYFEEEEMVTVDSG 463 Query: 618 YDKLASTIRTAVRVLD-------------------NVIDINCHTIEK------------- 645 K A I TA+ LD N+ +N I Sbjct: 464 VTKPAKKI-TALDTLDGKKIWMVEKDPVDGETAVCNLASVNLSKINTPEDIARVVPTAIR 522 Query: 646 -------------AKKSNHTHRAIGLGL--MGFQSALHLLHIPYASPEAVEIADESMEFI 690 K ++ +GL MG L I + S E DE ME + Sbjct: 523 MLDNVIDLNFYPLGKVKKTNEKSRSIGLGVMGEAQMLAEAGIEWGSSEHFHKIDEVMESV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-----------GLLAEVRDELAMN 739 S++AI AS +LA E+G Y +F+GS W +G+FPID GL D Sbjct: 583 SYYAIKASSDLALEKGCYPNFEGSDWSKGIFPIDKANPEACKLVDRGGLFGYTHD----- 637 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG Sbjct: 638 ------WEALREKVKNDGMRNGYLMAIAPTSSISILTGTTQAIEPVYKRKWYEENLSGMI 691 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VV + + D + +E+D L+ + Sbjct: 692 PVV-------------------------------VPNLNPDTWAYYTPCYELDQRLLVRA 720 Query: 860 ASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 + RQKWIDQ QSLN++ LD+ SG+ L+ IY +AW GLK+TYYLRS+S +V Sbjct: 721 GAIRQKWIDQGQSLNIFIRLDKASGRYLNDIYMEAWKFGLKSTYYLRSQSPEAV 774 >gi|323337188|gb|EGA78442.1| Rnr3p [Saccharomyces cerevisiae Vin13] Length = 885 Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust. Identities = 264/737 (35%), Positives = 409/737 (55%), Gaps = 36/737 (4%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ + + P+YA + AR + L ++ T + K + H + Sbjct: 63 VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 ++ +E + ++ ++ +VY +RDF + Y G + L Y L Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +NG E PQ MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+ Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + DD + GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++V N+TA V+QGG KR GA +LE WH D+ +F+D+RK G + R D+ A WIP Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV ++ WTLFSP L D++G EFE Y YER+ RG + I A LW Sbjct: 352 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +L ETG P++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI Sbjct: 406 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 465 Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L A ++ +++++L + L+ VID N + + +A+ SN HR I LG+ Sbjct: 466 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 525 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G +L +P+ S A + + E I + AS ELAQ+ G YS+F+GS +G+ Sbjct: 526 QGLADTYMMLRLPFESEXAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 585 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D W+ L+K + G+RNS MA PTA+ + I G ++ Sbjct: 586 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 635 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN +L+ +L +WD++M L +GSI + +P + Sbjct: 636 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 695 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK+++ T +EI +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT Sbjct: 696 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 755 Query: 900 TYYLRSRSATSVEKSTL 916 YYLR+++A++ + T+ Sbjct: 756 MYYLRTQAASAAIQFTI 772 >gi|283481642|emb|CAZ69758.1| putative ribonucleoside-diphosphate reductase protein [Emiliania huxleyi virus 99B1] Length = 746 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 271/767 (35%), Positives = 417/767 (54%), Gaps = 48/767 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ +GT S ++ ++ GL V +V + + +YDG++ L+ + Sbjct: 1 MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EE 262 ++ L P+Y+K+ AR +++++K M LY Y+ + Sbjct: 61 TATYLTMTHPDYSKLAARI--------AVSSLHKMTSNKFSSVMDSLY-----NYVNTKT 107 Query: 263 GVKARLLHESMMD--------FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 G + L+ + +++ FD V + YE+D ++ G + + Y ING + Sbjct: 108 GQWSPLIADDIIECIRSNADVFDDV-----INYEKDLEYDIFGYKTMEKSYLSRINGDIV 162 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRVA+G+ + + A+E Y LLS F +TPT++N+GT++PQ+SSCFL Sbjct: 163 ERPQHMLMRVAIGIHCPDVDA---AIETYKLLSQKKFTHATPTMYNAGTKNPQMSSCFLL 219 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + DD + GIF ++ A+++K +GG+G VR ++I GT G S G++P L+V + Sbjct: 220 KMKDDSIEGIFDTIKNCALISKNAGGIGVSIHNVRAQNSYISGTGGYSNGLVPMLRVFDS 279 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG +RKGA YLE H D+ EFL+LRKNTG + R D+ A W+ D FMKR Sbjct: 280 TARYVDQGGGRRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKR 339 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V W+LF P E L D++G ++ YE YE + K + I A LW ++ Sbjct: 340 VEAGKNWSLFCPHECPGLSDVWGDDYVALYEKYESEG-----KARKTIPAQKLWFAIMDS 394 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD CN +S QQH+G + SNLCTEI ++ +ETAVCNL SI L + Sbjct: 395 QIETGTPYMLYKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPSFVK 454 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + FD+ L A LD VID N + I +A++SN HR IGLG+ G +L I Sbjct: 455 DGSFDHQHLYDVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKI 514 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 + SP+A + E E + F A++AS +LA+ +G YS+++GS G F D + V Sbjct: 515 SFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSNGKFQFDMWNVTPSV 574 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 R WD L+ VK G RNS A PTA+ A I G ++ +P NLY + Sbjct: 575 ----------RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSR 624 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN +LV +L R LW ++M + + +GS+ NI P+DLK I+ T +EI Sbjct: 625 RVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEIS 684 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 LI+ A+ R +I Q+QS N+++ +P+ KL ++ W GLKT Sbjct: 685 MRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731 >gi|300706935|ref|XP_002995698.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01] gi|239604894|gb|EEQ82027.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01] Length = 738 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 269/756 (35%), Positives = 425/756 (56%), Gaps = 43/756 (5%) Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231 LQ+V + + Y + +S ++ T + ++ +++ P Y K++AR L+ L Sbjct: 2 SLQNVDKNYFIDKVYNGWCEDMSSFEMITFVSETAASMMTINPEYGKLSARILICHLHEI 61 Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291 T +K + + PE + E VK R + + ++D Y +D+ Sbjct: 62 TFNTFSEKIIYLQKYR-NIINPEIY----EIVVKNREIIDDIID-----------YTKDY 105 Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 + + L Y +N IE PQ FMRVA+ + EK K E Y+L+S+ +F Sbjct: 106 DLTFFSITSLMKSYLFRVNDEVIERPQDIFMRVALQIHRDNWEKVK---ETYDLMSNHYF 162 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPTL+NS T QL+SCFL + + D + GI+ L++ A+++K+SGG+G + +R Sbjct: 163 THATPTLYNSCTIRSQLASCFLLSPINDSIEGIYDTLKQCAVISKHSGGIGLNLHSIRCN 222 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA-YLETWHIDVEEFLDLRKNT 469 G+ + T GKS+G+IP ++V N T +NQGG R+ + A YLE WH D+ +FLDLRKNT Sbjct: 223 GSDLVSTGGKSRGIIPLIQVINSTKKYINQGGNRRSSSMAIYLEPWHKDIFDFLDLRKNT 282 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + R D+ TA WI DLFM+RV +N W+LF P+E L D++G++F Y YER Sbjct: 283 GSEDIRARDIFTALWINDLFMERVDKNEEWSLFCPNEAKGLDDVWGEDFNKLYTKYERTK 342 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 +R +K A LW+ ++ ETG P++ +KD CN S QQ++G++ SSNLC EI Sbjct: 343 NRTVVK------ARKLWKAIIEAQIETGTPYMLYKDTCNRLSNQQNLGIIKSSNLCAEII 396 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 S E AVCNL S+ L +FD+++L+ ++ R L+N ID + +E+ K+S Sbjct: 397 EYSDKNEIAVCNLASVCLSRFVREGKFDFEELSKIVKVITRNLNNCIDSTFYPVEECKRS 456 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IG+G+ G A L+ P+ S A ++ + E I + A+ SVELA+E G Y Sbjct: 457 NFRHRPIGIGVQGLADAFVLMRYPFDSQNARDLNFKIFETIYYSALEESVELAKEYGPYE 516 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAP 768 +F GS +G+F EL + L W+ L++++K G+RNS ++ P Sbjct: 517 TFAGSPLSKGIFHF-----------ELCKKKVPNLEKWNLLREKIKKHGVRNSLLVSPMP 565 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TA+ + I ++ +P N+Y + +G+F +VN +L+ +L +LW M + + ++ Sbjct: 566 TASTSQIFNNNECFEPFTSNIYTRRTHAGEFQIVNQYLLKDLINLNLWSHEMKNLIIEYE 625 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 GSI NI+ IP D+K ++ TA+E+ +I+ A+ RQ +IDQ+QSLNL++ +P+ KL + Sbjct: 626 GSIQNIKSIPQDIKDLYKTAWELKMKHVIDLAADRQLFIDQSQSLNLFVAQPTYSKLSSM 685 Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 + A+ GLKT YYLR+R TS K T VD KL Sbjct: 686 HFYAFKSGLKTGMYYLRTRPITSAIKFT---VDQKL 718 >gi|68629683|gb|AAY99446.1| ribonucleotide reductase [Cyprinid herpesvirus 3] Length = 806 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 277/779 (35%), Positives = 423/779 (54%), Gaps = 48/779 (6%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DGT + ++ + E + V +++ + + +G S+++ L ++ + Sbjct: 11 DGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDELLAHTASNMT 70 Query: 211 EKEPNYAKVTARFL---LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 P+Y+K+ AR L KL + V K+ +F + G++A Sbjct: 71 TTHPDYSKLAARIAVTNLHKLTSPKFSEVCKR--------------LWFNVNPDTGLRAP 116 Query: 268 LLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 L+ + + + L +++ DF + Y G + L Y L IE PQ MR Sbjct: 117 LIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQHTLMRC 176 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383 A+ + + ++ Y LSS +F ++PTLFNS + PQLSSCFL + D + GI Sbjct: 177 ALQI---HGDNXDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKSDSMEGI 233 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 ++ A+++K++GGLG + +RG GA+I GTNG S G++P L++ N V+QGG Sbjct: 234 ADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERMVDQGGN 293 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR GA+ Y+E WH+DV +FL+LRKNTG D +RT D+ A WIPDLFM+RV W+L Sbjct: 294 KRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLM 353 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P L +++G EFE Y YE E K R + A LW +L ETG P++ Sbjct: 354 CPASCPGLDEVWGPEFEALYTRYE-----AEGKARRTVKARDLWNSVLVAQLETGGPFML 408 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDY 618 +KD CN +S QH+G + SNLCTEI ++SEE AVCNL S+ L A + ++Y Sbjct: 409 YKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIAEDPYEY 468 Query: 619 D--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D LA +R R L+ VID N + + +A +SN HR IG+G+ G ++ IP+ Sbjct: 469 DFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMMGIPFTC 528 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A ++ E I + A+ S +LAQ G Y +++GS +G+ D GL E Sbjct: 529 GKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKRE----- 583 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + + W+EL+ R++ G+RNS ++ PTA+ A I G ++SI+P NLY + +S Sbjct: 584 --DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLYQRRVLS 641 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN LV L++ LW++ M + L H GS+ NIE P+ LK I+ TA+EI L Sbjct: 642 GEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYEISQKDL 701 Query: 857 IESASRRQKWIDQAQSLNLYL--DEP--SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 I A+ R ++DQ+QSLNL+L D+P KKL ++ AW GLKT YYLR+++A + Sbjct: 702 ITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRTKAAVA 760 >gi|190406283|gb|EDV09550.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|256269776|gb|EEU05042.1| Rnr3p [Saccharomyces cerevisiae JAY291] Length = 869 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 264/737 (35%), Positives = 409/737 (55%), Gaps = 36/737 (4%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ + + P+YA + AR + L ++ T + K + H + Sbjct: 47 VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 105 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 ++ +E + ++ ++ +VY +RDF + Y G + L Y L Sbjct: 106 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 158 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +NG E PQ MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+ Sbjct: 159 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 215 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + DD + GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP Sbjct: 216 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 275 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++V N+TA V+QGG KR GA +LE WH D+ +F+D+RK G + R D+ A WIP Sbjct: 276 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 335 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV ++ WTLFSP L D++G EFE Y YER+ RG + I A LW Sbjct: 336 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 389 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +L ETG P++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI Sbjct: 390 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 449 Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L A ++ +++++L + L+ VID N + + +A+ SN HR I LG+ Sbjct: 450 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 509 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G +L +P+ S A + + E I + AS ELAQ+ G YS+F+GS +G+ Sbjct: 510 QGLADTYMMLRLPFESEVAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 569 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D W+ L+K + G+RNS MA PTA+ + I G ++ Sbjct: 570 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 619 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN +L+ +L +WD++M L +GSI + +P + Sbjct: 620 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 679 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK+++ T +EI +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT Sbjct: 680 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 739 Query: 900 TYYLRSRSATSVEKSTL 916 YYLR+++A++ + T+ Sbjct: 740 MYYLRTQAASAAIQFTI 756 >gi|68490738|ref|XP_710811.1| hypothetical protein CaO19.13267 [Candida albicans SC5314] gi|68490761|ref|XP_710800.1| hypothetical protein CaO19.5845 [Candida albicans SC5314] gi|46432045|gb|EAK91552.1| hypothetical protein CaO19.5845 [Candida albicans SC5314] gi|46432057|gb|EAK91563.1| hypothetical protein CaO19.13267 [Candida albicans SC5314] Length = 816 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 278/795 (34%), Positives = 436/795 (54%), Gaps = 60/795 (7%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALI 203 KI + G F+S ++ ++EE L D+ ++ + + L+ +L T A + Sbjct: 3 KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK--------KPQKATHHEMQCLYPEY 255 +SR + P+YA + R KL +V + + +P+K+ + Sbjct: 63 IASRVIYH--PDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP---ISSA 117 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F + +++ H +D + RD+ Y G++ L Y L I+G E Sbjct: 118 FYKVVKK-------HGEFLD-------KVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAE 163 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FMRVA+G+ + E Y+L+S +F+ ++PTL+N+G+ LSSCFL Sbjct: 164 LPQYLFMRVAIGIHQNDINA---IAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVA 220 Query: 376 VPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + DD + GIF L E A+++K SGG+G +R G++I TNG S G++P L+V N+T Sbjct: 221 MKDDSIDGIFKTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNT 280 Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 A V+QGG KR GA Y+E WH D+ + L++RKN G++ RT D+ WIPDLFMKRV Sbjct: 281 ARYVDQGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRV 340 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N+ WTLFSP+E L D+YG+EFE Y YE + K+SA LW +L Sbjct: 341 KENSDWTLFSPNEAVGLSDVYGEEFEKLYCKYESEG------FGTKVSAHKLWLAILHSQ 394 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ETG P++ +KD CN +S Q+++G + SSNLC EI SS +ETAVCNL S+ L + Sbjct: 395 TETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKT 454 Query: 614 NQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + FD++KL S + R L+ VID+ + +E A+ SN HR I LG+ G Sbjct: 455 TEDAIGFDFEKLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAE 514 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +P+ S A + + E I A+ ASVELA + G Y +F+GS +G+ D Sbjct: 515 LRLPFDSAMAKTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFD----- 569 Query: 730 AEVRDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + ++ S + W LK ++ G+RNS +A PTA+ + I G ++ +P N Sbjct: 570 ------MWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSN 623 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LY + ++G++ +VN +L+ +L +WD AM + + +GSI NI IPD++K+++ T Sbjct: 624 LYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTV 683 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +E+ +I+ A+ R K++DQ+QS+N++L P+ KL + AW GLKT YYLR+++ Sbjct: 684 WELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQA 743 Query: 908 ATSVEKSTLKGVDGK 922 A+ + T VD K Sbjct: 744 ASRAIQFT---VDAK 755 >gi|131840167|ref|YP_001096176.1| ORF141 [Cyprinid herpesvirus 3] gi|84181499|gb|ABC55102.1| hypothetical protein [Cyprinid herpesvirus 3] gi|109706742|gb|ABG42968.1| ORF141 [Cyprinid herpesvirus 3] gi|129560660|dbj|BAF48955.1| ribonucleotide reductase large subunit [Cyprinid herpesvirus 3] Length = 806 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 277/779 (35%), Positives = 423/779 (54%), Gaps = 48/779 (6%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DGT + ++ + E + V +++ + + +G S+++ L ++ + Sbjct: 11 DGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDELLAHTASNMT 70 Query: 211 EKEPNYAKVTARFL---LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 P+Y+K+ AR L KL + V K+ +F + G++A Sbjct: 71 TTHPDYSKLAARIAVTNLHKLTSPKFSEVCKR--------------LWFNVNPDTGLRAP 116 Query: 268 LLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 L+ + + + L +++ DF + Y G + L Y L IE PQ MR Sbjct: 117 LIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQHTLMRC 176 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383 A+ + + ++ Y LSS +F ++PTLFNS + PQLSSCFL + D + GI Sbjct: 177 ALQI---HGDNIDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKSDSMEGI 233 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 ++ A+++K++GGLG + +RG GA+I GTNG S G++P L++ N V+QGG Sbjct: 234 ADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERMVDQGGN 293 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR GA+ Y+E WH+DV +FL+LRKNTG D +RT D+ A WIPDLFM+RV W+L Sbjct: 294 KRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLM 353 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P L +++G EFE Y YE E K R + A LW +L ETG P++ Sbjct: 354 CPASCPGLDEVWGPEFEALYTRYE-----AEGKARRTVKARDLWNSVLVAQLETGGPFML 408 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDY 618 +KD CN +S QH+G + SNLCTEI ++SEE AVCNL S+ L A + ++Y Sbjct: 409 YKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIAEDPYEY 468 Query: 619 D--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D LA +R R L+ VID N + + +A +SN HR IG+G+ G ++ IP+ Sbjct: 469 DFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMMGIPFTC 528 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A ++ E I + A+ S +LAQ G Y +++GS +G+ D GL E Sbjct: 529 GKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKRE----- 583 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + + W+EL+ R++ G+RNS ++ PTA+ A I G ++SI+P NLY + +S Sbjct: 584 --DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLYQRRVLS 641 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN LV L++ LW++ M + L H GS+ NIE P+ LK I+ TA+EI L Sbjct: 642 GEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYEISQKDL 701 Query: 857 IESASRRQKWIDQAQSLNLYL--DEP--SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 I A+ R ++DQ+QSLNL+L D+P KKL ++ AW GLKT YYLR+++A + Sbjct: 702 ITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRTKAAVA 760 >gi|149238952|ref|XP_001525352.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces elongisporus NRRL YB-4239] gi|146450845|gb|EDK45101.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces elongisporus NRRL YB-4239] Length = 862 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 259/648 (39%), Positives = 376/648 (58%), Gaps = 28/648 (4%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 +K +RD+ Y G++ L + Y L I+G E PQ F+RV++G+ T E YN Sbjct: 140 IKSDRDYDLTYFGIKTLENSYLLRIDGEVAETPQQMFLRVSIGI---HTHSVSHVEETYN 196 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403 L+S +F+ + PTL+N+G++ LSSCFL + DD + GI+ L E A+++K SGG+G Sbjct: 197 LMSQKYFIHALPTLYNAGSKFNYLSSCFLMAMKDDSIDGIYKTLHETALISKASGGVGIH 256 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462 +R G++I TNG S G++P L+V N+TA V+QGG KR GA YLE WH DV + Sbjct: 257 VHDIRANGSYIASTNGLSNGLVPMLRVFNNTARFVDQGGGKRPGAFAIYLEPWHADVFDI 316 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD+RKN G++ RT D+ WIPDLFM+RV N W+LFSPDE L D+YG +F+ Y Sbjct: 317 LDMRKNHGNEEHRTRDLFYGLWIPDLFMERVKTNGQWSLFSPDEAPGLSDVYGDDFKELY 376 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E YE+ E R I+A LW +L ETG P++ +KD CN +S Q+++G + SS Sbjct: 377 ERYEK-----EKLATRTINAQKLWLAILESQTETGGPYMLYKDACNRKSNQKNLGTIKSS 431 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDI 638 NLC EI SS ETAVCNL S+ L + ++ FD+ KL + + L+ VID+ Sbjct: 432 NLCCEIIEYSSPTETAVCNLASLALPSFLEVSEDDIKFDFLKLHEVTKVVTKNLNKVIDV 491 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +E AK SN HR I LG+ G L +P+ S A + + E + AI AS Sbjct: 492 TMYPVESAKNSNKKHRPIALGVQGLADLFLELRLPFDSSAAKNLNIQIFETVYHAAIEAS 551 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTI 756 +EL+ G Y+SF+GS +G D L ++ S L WD LK +V Sbjct: 552 MELSIVEGPYASFQGSPASKGKLQFD-----------LWNHKPSDLYDDWDILKSKVMKY 600 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ + I G ++ +P NLY + +SG+F VVN +L+ +L LW Sbjct: 601 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVNKYLIKDLIDLGLW 660 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + AM + L GS+ NI+ +P +LK ++ T +E+ +I+ A+ R K+IDQ QS+N+Y Sbjct: 661 NSAMRNKLMMDGGSVQNIDILPKELKTLYRTVWELKQKDIIDMAADRAKFIDQLQSMNIY 720 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 L P+ KL + AW MGLKT YYLR+++AT + T+ + L Sbjct: 721 LQNPTIGKLTSCHFHAWEMGLKTGMYYLRTQAATRAIQFTIDANEANL 768 >gi|45185841|ref|NP_983557.1| ACR155Wp [Ashbya gossypii ATCC 10895] gi|44981631|gb|AAS51381.1| ACR155Wp [Ashbya gossypii ATCC 10895] Length = 864 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 255/635 (40%), Positives = 372/635 (58%), Gaps = 20/635 (3%) Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 DF F Y G + L Y L G E PQ FMRVA+ L + + R +E Y L+++ Sbjct: 159 DFTFTYFGWKTLCKSYLLKHQGRVHETPQYMFMRVALALHGPSGDID-RVLETYRLMANK 217 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVR 408 +F+ ++PTLFN+GT LSSCFL + +D + GI+ AL + A+++K SGG+G + +R Sbjct: 218 YFIHASPTLFNAGTTSQFLSSCFLLGIHEDSIDGIYNALHKAALISKASGGIGIHVSDIR 277 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRK 467 G++I GTNG S G++P L V N TA V+QGG KR GA C YLE WH DV +FL LR+ Sbjct: 278 ANGSYISGTNGTSNGLVPMLSVFNSTARYVDQGGNKRPGAFCIYLEPWHADVFDFLRLRR 337 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 N G + R D+ WIPDLFMKRV N W+LFSP+E L D YG+ FE Y YER Sbjct: 338 NHGKEEMRARDLFYGLWIPDLFMKRVENNGEWSLFSPNEAVGLSDCYGEAFEQLYVRYER 397 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E++ +R++ A LWR++L ETG P++ +KD CN +S Q+++G + SSNLC E Sbjct: 398 -----ELEPYRRVKAQELWREILLSQTETGGPFMLYKDACNSKSNQKNLGTIKSSNLCCE 452 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTI 643 I SS +E AVCNL S+ L + FDY +L S ++ R LD IDI + + Sbjct: 453 IVEYSSRDEVAVCNLASVALPTFVSVTSDAITFDYARLHSVVKVMTRNLDKAIDIGDYPV 512 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A++SN HR + LG+ G L+ P+ EA ++ E E I A+ S+ELA Sbjct: 513 PEAERSNKKHRPLALGVQGLADVFMLMRFPFNGEEAAQMNREIFETIYHAAVETSIELAA 572 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT-IGMRNSN 762 E G Y+SF GS +G D L +D WDELK+++K+ G+RNS Sbjct: 573 EYGVYASFVGSPASKGELQFD---LWGRNKDNYQFLYDD---WDELKEKIKSGPGLRNSL 626 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 + PTA+ + I G ++S +P +Y + +SG++T+VN ++V + +W E + + Sbjct: 627 LVGPMPTASTSQILGFTESFEPMTSMIYTRRVLSGEYTLVNKYMVQDFCDLGIWSEELKN 686 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 + GSI I+ IP DLK ++ T +E+ LI+ ++ R ++DQ+QSLNL+L EP+ Sbjct: 687 RIIKDGGSIQGIDGIPPDLKDLYKTVWELPQRKLIDLSADRAPFVDQSQSLNLFLKEPTM 746 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 KL ++ AW GLKT YYLR+++A + + TL Sbjct: 747 GKLTSMHFYAWKKGLKTGMYYLRTQAAANAIQFTL 781 >gi|289548461|ref|YP_003473449.1| ribonucleoside-diphosphate reductase subunit alpha [Thermocrinis albus DSM 14484] gi|289182078|gb|ADC89322.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermocrinis albus DSM 14484] Length = 766 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/811 (35%), Positives = 436/811 (53%), Gaps = 93/811 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ G + ++ ++++ AC+GL DV + + D ++ +++ LI Sbjct: 1 MKVIKRSGRREELDISKIRIVIDFACAGL-DVDPLELEMDAQIQFRDNITTREIQQLLIR 59 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR----Y 259 ++ + E P++ V AR LL L ++V K + + + + PE F Y Sbjct: 60 TAAEKVSPETPDWTYVAARLLLYDLYKDVGHLRGYKVKDKINGKYRPYNPESFYHLIKTY 119 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318 + G+ L E+ ++ LA +K ERD F Y G+++L DRY + RI E+PQ Sbjct: 120 TDRGIYGGYLLENYTKEEIDQLAQYIKPERDLLFNYTGIKVLSDRYLVRDEEGRIIELPQ 179 Query: 319 AFFMRVAM--GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 +M +AM G+A K+ E+ + +FY++LS + +TPT+ N+ H QLSSCF+ TV Sbjct: 180 EMYMLIAMTLGIAEKKEERLEWVKKFYDVLSQHYVSLATPTMMNARRTHTQLSSCFVLTV 239 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY IF +Q+ A ++K++GGLG +R GA I G S GV+P +K+ ND V Sbjct: 240 DDDLYDIFDNVQKAAQISKFAGGLGIYLGKIRATGAPIRKFRGASSGVLPVVKIINDVMV 299 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+Q G RKG+ L+ WH DV +FL+++ N GD+R++ HD++ A IPDLFM+RV + Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVLDFLEVKTNVGDERKKAHDIHPAVAIPDLFMERVRRR 359 Query: 497 AGWTLFSP---DEVSD---LHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRK 548 WTL P +V D L D YGKEFE Y E+ E+ + R++ A LW++ Sbjct: 360 EKWTLMDPYYCKKVKDGKNLEDFYGKEFEEVYLRLEK-----ELPPYAKREVDAWELWKR 414 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593 +LT++FETG P+I F+D N +P +H G+V+SSNLC EI N S Sbjct: 415 LLTVIFETGEPYIFFRDTANYLNPNKHCGMVYSSNLCMEIIQNMSVTTHEEDILEEDGRI 474 Query: 594 -----SEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 S + VCNLGSINL L + A + LA + VR+LDNVI IN + I++A+ Sbjct: 475 THRKRSGDVVVCNLGSINLGLVYTAED------LAKVMPVLVRMLDNVISINFYAIKEAE 528 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RAIG+G+ + L I + S E ++ AD E I+++AI AS +LA+ERG Sbjct: 529 YTNKRYRAIGIGVSNYHYCLVKNGIQWESEEHIKFADALFERIAYYAIKASCDLAKERGK 588 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F GS W +G+F G E + ++ + L W L K VK G+RN +A+ Sbjct: 589 YPLFDGSDWSKGIF----FGRTPEENQQESVKNGNHLDWIGLAKEVKEHGLRNGYLLAVM 644 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT + + I G + S+DP + Y + NMS Sbjct: 645 PTGSTSLIIGATASVDPIFAKFYKEENMS------------------------------- 673 Query: 828 DGSIGNIERIPDDLKKI---HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSG 882 G + ++P ++KK + +A+ ID W I +A+ RQKWIDQ+QS NLY+D + G Sbjct: 674 ----GILPQVPPEIKKYFWHYKSAYHIDQEWSIRAAAARQKWIDQSQSFNLYIDPEKIDG 729 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L +Y+ A +GLKT YY RS+S T +E+ Sbjct: 730 PTLSHLYQLAHQLGLKTVYYCRSKSITDIEE 760 >gi|255721743|ref|XP_002545806.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] gi|240136295|gb|EER35848.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] Length = 818 Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust. Identities = 275/792 (34%), Positives = 443/792 (55%), Gaps = 47/792 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--A 201 K+K++ + T F+ ++ +++E L+++ VL K + ++ L T A Sbjct: 3 KVKVLFGE-TEQDFDESKVLKLLQELSFNLENLQLDDVLESVQKGLPATVTVYQLYTFIA 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL--YPEYFCRY 259 + +SR + P+YA + R L KL +V ++ +++ Y ++ Sbjct: 62 EVIASRIIYN--PDYAILAGRVELRKLYLKVPYNFSDNVERLRNYKSHGAKSYSPISSKF 119 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 E K + + ++D RD F Y G++ L + Y L I+ E+PQ Sbjct: 120 YEVVKKHKEFFDGLID-----------KSRDDEFTYFGIKTLENSYLLKIDSEPAELPQF 168 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+RVA+G+ L++ E Y+L+S +F+ ++PTL+N+G LSSCFL + DD Sbjct: 169 LFLRVAIGIHLEDL---GSVAETYDLMSKKYFIHASPTLYNAGGEFNYLSSCFLIAMKDD 225 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L E+A+++K SGG+G VR G++I GTNG + G++P L+V N+TA V Sbjct: 226 SIDGIYKTLHESALISKASGGIGIHVHEVRSNGSYIAGTNGIANGLVPMLRVFNNTARYV 285 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KR GA Y+E WH D+ + L++RKN G + RT D+ WIPDLFM+RV + Sbjct: 286 DQGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGSEELRTRDLFYGLWIPDLFMQRVKADE 345 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL SP E L D+YG +F+ YE YE+Q + KI A LW +L ETG Sbjct: 346 YWTLMSPSEAPGLSDVYGDDFKELYEKYEKQG------LGTKIRAHKLWLAILESQTETG 399 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614 P++ +KD CN +S Q+++G + SSNLC EI SS EETAVCNLGS+ L + + Sbjct: 400 GPYMLYKDACNEKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLGSLALPTYLKTSDDE 459 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 +FD++KL S + + L+ VID+ + +E A+ SN +R I LG+ G L + Sbjct: 460 VIEFDFEKLHSVTKVLAKNLNKVIDVTLYPVETAEYSNKRNRPIALGVQGLADLFAELRL 519 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S A ++ + E I A+ ASVEL+ + G Y +F+GS +G+ D Sbjct: 520 PFESEAARKLNIQIFETIYHAALEASVELSIQDGPYETFQGSPASEGILQFD-------- 571 Query: 733 RDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + S++ W++LK+ ++ G+RNS +A PTA+ + I G ++ +P NLY Sbjct: 572 ---MWNHTPSKMYDWNKLKESIQKFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYN 628 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VVN +L+ +L +W+ AM + + +GSI NI+ IP D+K+++ T +EI Sbjct: 629 RRVLSGEFQVVNKYLIKDLMDLGIWNSAMRNKIMMENGSIQNIQSIPKDIKELYKTVWEI 688 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 +I+ A+ R K+IDQ+QS+N++L EP+ KL + AW GLKT YYLR+++A+ Sbjct: 689 SQKVIIDMAADRGKFIDQSQSMNIHLREPTFGKLTSCHFYAWKQGLKTGMYYLRTQAASR 748 Query: 911 VEKSTLKGVDGK 922 + T+ + + Sbjct: 749 AIQFTVDATEAE 760 >gi|209171046|ref|YP_002268193.1| agip163 [Agrotis ipsilon multiple nucleopolyhedrovirus] gi|208436637|gb|ACI28864.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus] Length = 772 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 279/776 (35%), Positives = 425/776 (54%), Gaps = 49/776 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET- 200 KL ++ DG+ + +V+ C GL + V V + K + G+S +L Sbjct: 2 KLYVVKRDGSHQEVRLDEITALVQSLCYGLNAEYVDPAAVTVKVVKGVRPGVSTEELNAY 61 Query: 201 -ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 A + +S T I + YA + R L++ L + L + + + K H L + R Sbjct: 62 AADVAASMTYIHYD--YALLAGRILVDNLHKR-LDSSFSEIIKNLHG--HGLVSDDLLRI 116 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 E H + +D + + E DF ++Y G + L + Y L I+ E PQ Sbjct: 117 SET-------HAATLDAAIAH-------ELDFEYKYFGYKTLENGYLLKIDNRVAERPQH 162 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRVA+G+ + E A+E Y ++S F ++PTLF++GTR PQ+ SCFL V DD Sbjct: 163 MLMRVALGIHGDDIED---AIETYRMMSQKLFTHASPTLFSAGTRIPQMCSCFLLGVRDD 219 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L + A ++KY GG+G + VR G+ I+ TNG + G+ P ++V N+ V Sbjct: 220 SIDGIYRTLGDCAAISKYGGGIGVNVHQVRARGSKINSTNGTASGLEPMVRVFNNMVRHV 279 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGGKRKGA+ Y+E WH D+ L+L++N G + + D+ A W+PDLFM+RV + Sbjct: 280 DQGGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMRRVNADDM 339 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+L P + L D YG EFE YE YE E + +++ A L R ++ ETG Sbjct: 340 WSLMCPHQCPGLADCYGDEFERLYERYE-----SEGRYRQRVRAQDLHRFIVETQVETGG 394 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQF 616 P++ FKD CN +S QQ++GV+ SNLC EI S +EETAVCNL SI N + Sbjct: 395 PYMLFKDACNRKSNQQNLGVIKCSNLCAEIVQYSDAEETAVCNLASIAVNRCVRVDEMTY 454 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D++KL + + VR L+ +ID N + I A++SN HR IG+G+ G A LL +PY S Sbjct: 455 DFEKLKAITKVVVRNLNKIIDRNHYPIASARRSNEKHRPIGVGIQGLADAFVLLRMPYES 514 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + E I + A+ AS ELAQ G+YS+F GS +GV D Sbjct: 515 EEAAVLNKQIAETIYYGALEASCELAQRDGSYSTFAGSPASRGVLQYD------------ 562 Query: 737 AMNRTSRLPWD--ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 N T WD LK ++ G+RNS +A PTAT A I G ++S +P N+Y++ Sbjct: 563 MWNATPSALWDWQALKDDIRAHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRV 622 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 ++G+F VVN +L+++L + +++ + + + H GSI NIE IPD +K ++ TA+E+ Sbjct: 623 LAGEFQVVNQYLIDDLIKLNVYTPEIRNAIFAHKGSIQNIEGIPDSVKNLYKTAWEMKAK 682 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 +IE A+ R +IDQ+QS NL++ +P+ + I+ +W GLKT YYLR++ A Sbjct: 683 RMIEMAADRNAFIDQSQSFNLFVAQPTYAVMTSIHNYSWRCGLKTGMYYLRTKPAA 738 >gi|215401394|ref|YP_002332698.1| ribonucleotide reductase large subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] gi|198448894|gb|ACH88684.1| ribonucleotide reductase large subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] Length = 761 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/817 (33%), Positives = 438/817 (53%), Gaps = 64/817 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG L +S +L + C L Q V + V + K + D + D++ Sbjct: 1 MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + L K +Y + R L+ + + V + K Q+ H + +E Sbjct: 61 ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS----------DE 110 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + H +++ ++ D+K + D+ Y G Q L + Y + IN E Q M Sbjct: 111 LLSVTIKHSKIIEENI-----DMKLDLDY--NYFGYQTLKNGYLIKINEKVAERIQHMHM 163 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 R+A+G+ + + A++ Y LS + ++PT+F +GT PQ+SSCFL T+ D + Sbjct: 164 RIALGIFGDDIDS---AIKSYKFLSRKMYTHASPTMFAAGTLTPQMSSCFLLTMESDSIR 220 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L + A+++K+ GG+G + VRG + I TNG + G++P L+V N+ V+QG Sbjct: 221 GIYNTLNDCAIISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA Y+E WH D+ + L +R+N G + + D+ A W+PD+FMKRV +N W+L Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L+D YG +FE Y++YE D+G+ + ++ AV L R ++ + ETG P++ Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYE---DKGQFR--EQMPAVTLMRNIIEIQAETGTPYM 395 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD CN +S Q + G++ SNLC EI + +ETAVCNL SI + + N+ FD+ L Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + ++ V L+ +ID N + IE AKKSN HR IG+G+ G A +L IPY S AV Sbjct: 456 HTVVKHVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E + A+ AS ELA YS+F GS +G+ D + T Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S W +LK ++ G+RNS +A PTAT A I ++S +P + NL+++ +SG+F V Sbjct: 566 SLWDWSQLKMNIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858 VN +LV++L + +L+ +M + + GSI +I +IPD+LKK++ T +EI + ++IE Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+Y+ P+ K+ ++ W GLKT YY R+ A + ++ T+ Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTV- 744 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 PN CT +++C CQ Sbjct: 745 ------------SPN---------LECTKNSDCASCQ 760 >gi|322792463|gb|EFZ16447.1| hypothetical protein SINV_80023 [Solenopsis invicta] Length = 802 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 272/762 (35%), Positives = 424/762 (55%), Gaps = 54/762 (7%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 V + + +Y G++ L+ ++ T+ P+YA + AR + L +E KK Sbjct: 3 VAIQVIRGLYSGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKET-----KKS 57 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLG 297 H++ Y+ R ++ E +++ + L + + Y+RDF++ Y+G Sbjct: 58 FSEVMHDL------YYARNSITNQHTPIISEHYYNIIKNNADRLDSAIIYDRDFSYNYIG 111 Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 + L Y L ING +E PQ MRVA+G+ + +K +E YN LS +F ++PT Sbjct: 112 FKTLERSYLLKINGKIVERPQHMLMRVAVGIHENDIDK---VIETYNYLSERYFTHASPT 168 Query: 358 LFNSGTRHPQLSS---------CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 LFN+ T + Q+SS CFL T+ +D + GI+ L++ ++++KY+GG+G + + Sbjct: 169 LFNACTNNQQMSSLRLISEALLCFLLTLENDSIKGIYSMLKKCSLISKYAGGIGINVHCI 228 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R A T + G++ LK+ N+ AV V+QGG KR GA YLE WH D+ EFL+L+ Sbjct: 229 RAKSAEDTNT---TNGLVSVLKLYNEIAVYVDQGGNKRPGAFAIYLEPWHADIFEFLELK 285 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 +N GD R D+ WIPDLFM+RV + W+L P E L D++G EF+ Y YE Sbjct: 286 RNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMCPYESPGLADVWGDEFKELYIRYE 345 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++ + +++ A +W +L ETG P++ +KD CN +S QH+G + SNLCT Sbjct: 346 KEG-----RYRKQVEARTVWLAILRSQGETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCT 400 Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI S E AVCNL SI N+ + FD+DKL + + R LD VID+N + I Sbjct: 401 EIVEYSGPGEVAVCNLASIAVNMFVNTDTKTFDFDKLKTVAKIVTRNLDKVIDVNFYPIP 460 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + K SN HR IG+G+ G A L+ + S EA E+ + E + + A+ S ELA E Sbjct: 461 ETKASNQKHRPIGIGIQGLADAFLLMRYSFDSKEAKELNIKIFETLYYGALECSCELAAE 520 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G Y +++GS +G+ D + T WDELK ++ G+RNS + Sbjct: 521 KGTYETYQGSPVSKGILQYDMWNV----------KPTDLWNWDELKAKIAEHGVRNSLLI 570 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ A I G ++SI+P N+YV+ +SG+F +VN L+ +L R LWDE M +++ Sbjct: 571 APMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEI 630 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 + GS+ NIERIPDDLK ++ T +EI ++E A+ R +IDQ+QSLN+++ +P+ +K Sbjct: 631 LANFGSVQNIERIPDDLKMLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEK 690 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920 L ++ W GLKT YYLR++ A +V++S L+ D Sbjct: 691 LTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDQSKLQSRD 732 >gi|22549569|ref|NP_689342.1| putative ribonucletide reductase large subunit-like protein [Mamestra configurata NPV-B] gi|22476748|gb|AAM95154.1| putative ribonucletide reductase large subunit-like protein [Mamestra configurata NPV-B] Length = 761 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/817 (33%), Positives = 438/817 (53%), Gaps = 64/817 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG L +S +L + C L Q V + V + K + D + D++ Sbjct: 1 MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + L K +Y + R L+ + + V + K Q+ H + +E Sbjct: 61 ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS----------DE 110 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + H +++ ++ D+K + D+ Y G Q L + Y + IN E Q M Sbjct: 111 LLSVTIKHSKIIEENI-----DMKLDLDY--NYFGYQTLKNGYLIKINEKVAERIQHMHM 163 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 R+A+G+ + + A++ Y LS + ++PT+F +G+ PQ+SSCFL T+ D + Sbjct: 164 RIALGIFGDDIDS---AIKSYKFLSRKMYTHASPTMFAAGSLTPQMSSCFLLTMESDSIR 220 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L + AM++K+ GG+G + VRG + I TNG + G++P L+V N+ V+QG Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA Y+E WH D+ + L +R+N G + + D+ A W+PD+FMKRV +N W+L Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L+D YG +FE Y++YE D+G+ + ++ AV L R ++ + ETG P++ Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYE---DKGQFR--EQMPAVTLMRNIIEIQAETGTPYM 395 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD CN +S Q + G++ SNLC EI + +ETAVCNL SI + + N+ FD+ L Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + ++ V L+ +ID N + IE AKKSN HR IG+G+ G A +L IPY S AV Sbjct: 456 HTVVKHVVDSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E + A+ AS ELA YS+F GS +G+ D + T Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S W +LK ++ G+RNS +A PTAT A I ++S +P + NL+++ +SG+F V Sbjct: 566 SLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858 VN +LV++L + +L+ +M + + GSI +I +IPD+LKK++ T +EI + ++IE Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+Y+ P+ K+ ++ W GLKT YY R+ A + ++ T+ Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTVS 745 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 PN CT +++C CQ Sbjct: 746 -------------PN---------LECTKNSDCASCQ 760 >gi|299471069|emb|CBN78928.1| ribonucleotide reductase large chain subunit [Ectocarpus siliculosus] Length = 653 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 250/628 (39%), Positives = 375/628 (59%), Gaps = 32/628 (5%) Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 Y L +G +E PQ MRV++G+ + +K +E Y+L+S F +TPTLFN+GT Sbjct: 8 YLLKADGKVVERPQHMIMRVSVGIHKDDIDK---VIETYDLMSQRLFTHATPTLFNAGTP 64 Query: 365 HPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQ+SSCFL T+ +D + GI+ L++ A ++K++GG+G VR ++I GTNG S G Sbjct: 65 KPQMSSCFLLTMKEDSINGIYDTLKQCAQISKHAGGIGLSIHHVRAANSYIRGTNGSSNG 124 Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 ++P L+V N+TA V+QGG KRKG++ YLE WH D+ FLDL+KN G++ R D+ A Sbjct: 125 IVPMLRVFNNTARYVDQGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYA 184 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 WIPDLFM+RV + W LF P+E L D + +EF+ YE YE A G + R + A Sbjct: 185 MWIPDLFMQRVEADGDWNLFCPNEAPGLSDTHSEEFKELYEQYE--AKEGLSR--RTMKA 240 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW +L ETG P++ +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL Sbjct: 241 RLLWDAILESQVETGTPYMLYKDACNFKSNQKNLGTIKSSNLCTEIVEYTAPDEVAVCNL 300 Query: 603 GSINL-------LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 SINL A +D++KL R L+ VID N + IE+A+ SN HR Sbjct: 301 ASINLSALVIPPTAETTKATYDFEKLQHISEVVTRNLNRVIDANYYPIEEARNSNMRHRP 360 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G+ G A + +P+ S EA ++ + E I F A++ASVELA+E G Y ++ GS Sbjct: 361 IGIGVQGLADAFIKMRLPFESEEACKLNRDIFETIYFGAVNASVELAKELGPYETYAGSP 420 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 +G+ D G+ T R W LK R+ G+RNS +A PTA+ A I Sbjct: 421 ASEGLLQFDLWGV----------KPTGRHDWAALKARMAEHGLRNSLLVAPMPTASTAQI 470 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G ++S++P N+Y + ++G+FTVVN +L+ +L +R LW + + + GS+ N+ Sbjct: 471 LGNNESVEPFTSNMYNRRVLAGEFTVVNKYLLRDLTERGLWTPEVRNQIIADQGSVQNVR 530 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 +IP +LK ++ T +EI +++ A+ R +I Q+QS+N+++ E S KL ++ AW Sbjct: 531 QIPQELKDLYKTVWEIKQKFILNQAADRGAYICQSQSMNVHMAEASFGKLSSMHFYAWKK 590 Query: 896 GLKT-TYYLRSRSAT-----SVEKSTLK 917 GLKT YYLR+R +V++S+LK Sbjct: 591 GLKTGMYYLRTRPKADAIQFTVDQSSLK 618 >gi|303391084|ref|XP_003073772.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis ATCC 50506] gi|303302920|gb|ADM12412.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis ATCC 50506] Length = 768 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 273/807 (33%), Positives = 444/807 (55%), Gaps = 55/807 (6%) Query: 142 APKLKIMMDDGTLISF-NSKRLEMI-VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 + KLKI M G + + N +L+ + V+E ++ ++S T K + D SE+ Sbjct: 12 SEKLKIDMVRGQIEEYTNLLKLQHVNVDEL---MEKIASGWCEDMTRKEIVDYCSET--- 65 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 + ++I K P Y +++R ++ + + + +K + + Q E + Sbjct: 66 ------AASMITKHPEYGWISSRIIVSYIHDITMDSFVEKIKYIQKY--QGTISEEMYKI 117 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 I E + + +S++D YE+DF F Y G+ L Y + + +E PQ Sbjct: 118 IVENAE---IIDSIID-----------YEKDFLFNYFGILTLMKSYLIKVGEEIVERPQD 163 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FMR A+ + + K K E Y +LS +F +TPTL+NS + QL+SCFL T +D Sbjct: 164 VFMRTALQVHKSDFGKVK---ETYEMLSRHYFTHATPTLYNSCLKEAQLASCFLITPRED 220 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + G++ + + A++ KYSGG+G + +R G+ + T GKS G+IP ++V N T + Sbjct: 221 SIEGVYHMINQTAIITKYSGGIGLNLHGIRSKGSPLKRTGGKSNGIIPLIQVLNATKRYI 280 Query: 439 NQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQG +R+ G++ YLE WH+++ +FLDLRKNTG + R D+ A WI DLFM+RV N Sbjct: 281 NQGAERRPGSIAIYLEPWHMEIFDFLDLRKNTGPEEFRARDIFIALWINDLFMERVKNNE 340 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P + L++ +G+EF Y YE+ R + A LW+ ++ ETG Sbjct: 341 EWSLFCPSQAVGLNETWGEEFNALYCKYEKTISR------TVVPAQKLWKAIIEAQIETG 394 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P++ +KD CN S QQH+G + SSNLC EI SS EET+VCNLGSI+L N +FD Sbjct: 395 TPYMCYKDACNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLGSISLPMFVKNKKFD 454 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 ++ L +R L+ VID N + +E++K+SN HR IG+G+ G +L +P+ S Sbjct: 455 FESLKDVVRILTINLNKVIDFNYYPVEESKRSNMKHRPIGIGVQGLADLFAILRLPFDSD 514 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA + + E + + A+ S +LA++ G + S++GS +G+F + G A Sbjct: 515 EARNLNKDIFETMYYSALETSCKLAEKEGPFESYEGSPISKGIFHFELAGKKA------- 567 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ W+ L++R+K G RNS +A+ PTA + I G +++ +P N+Y + +G Sbjct: 568 ---SNNWDWEGLRERIKKYGTRNSLLIALMPTAGTSQIFGNNETFEPFISNIYTRRTHAG 624 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F +VN L+N+L + LW M + + ++GSI NI IP ++ I+ TA+EI +I Sbjct: 625 EFQIVNKHLINDLSELGLWSYEMKNLIIENEGSIQNITTIPKKIRDIYKTAWEIKMKAVI 684 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ RQ ++DQ+QSLN+++ +P+ +L ++ + GLKT YYLR+R TS K T Sbjct: 685 DLAADRQVFVDQSQSLNVFVAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFT- 743 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSS 943 VD KL ++ N + + SS Sbjct: 744 --VDKKLAEKTLSSMNDTDEPCSMCSS 768 >gi|217032473|ref|ZP_03437965.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128] gi|298736377|ref|YP_003728903.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter pylori B8] gi|216945819|gb|EEC24440.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128] gi|298355567|emb|CBI66439.1| ribonucleoside-diphosphate reductase, alpha chain [Helicobacter pylori B8] Length = 788 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 292/827 (35%), Positives = 434/827 (52%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L N +K ERDF F YLG++ LYDRY L N IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY---- 618 FKD N +P H G++ SSNLCTEI N++ + + + F Q Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDSN 463 Query: 619 -----DKLAST-------IRTAVRVLDN----VIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +KL ST I A +V + V ++ + K R + + + Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523 Query: 663 FQSALHLLHIPYASPEAVEIADESM--------EFISFHAIS------------------ 696 + + L P +A + + ++ + ++ H I+ Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQIS 583 Query: 697 -----ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 S LA+E+G Y F+ S W +G+FPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK+ GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + W+ + +A++ID LI++A+ RQKWIDQ Q Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 S+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|261839497|gb|ACX99262.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori 52] Length = 788 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 295/827 (35%), Positives = 437/827 (52%), Gaps = 105/827 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------NLLAHFAN 613 FKD N +P H G++ SSNLCTEI N++ + G+I L+ +N Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463 Query: 614 NQFDYDKLAST-------IRTAVRVLDN----VIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +KL ST I A +V + V ++ + K R + + + Sbjct: 464 ITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523 Query: 663 FQSALHLLHIPYASPEAVEIADESM--------EFISFHAIS------------------ 696 + + L P +A + + S+ + ++ H I+ Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRSIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583 Query: 697 -----ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 S LA+E+G Y F+ S W +G+FPID A E + + W L++ Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + W+ + +A++ID LI++A+ RQKWIDQ Q Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 S+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778 >gi|19074701|ref|NP_586207.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi GB-M1] gi|51701818|sp|Q8SR37|RIR1_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase gi|19069343|emb|CAD25811.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi GB-M1] Length = 768 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 256/742 (34%), Positives = 417/742 (56%), Gaps = 41/742 (5%) Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ ++I K P Y ++++R ++ + + + +K + H + E + +E G Sbjct: 65 TAASMITKHPEYGQISSRIIVSYIHEITMDSFVEKIKYIQKHR-GMVSEEMYGIILEHGE 123 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 E M++ YE DF F Y G+ L Y + + IE PQ FMRV Sbjct: 124 TI----EGMIN-----------YENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRV 168 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383 A+ + + EK + E YNLLS +F +TPTL+NS ++PQL+SCFL T +D + G+ Sbjct: 169 ALQIHKTDFEKVR---EVYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGV 225 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + + + A++ KYSGG+G + +R G+ + T G+S G+IP ++V N T +NQG + Sbjct: 226 YHMINQAAIITKYSGGIGLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAE 285 Query: 444 RK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+ G++ +LE WH+++ +FL+LRKNTG + R D+ TA WI DLFM+RV N W+LF Sbjct: 286 RRPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLF 345 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + L D++G+EF Y YE+ R + A LW+ ++ ETG P++ Sbjct: 346 CPSQAVGLSDVWGEEFNALYCKYEKTISR------TVVPAQKLWKAIIEAQIETGTPYMC 399 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD CN S QQH+G + SSNLC EI SS EET+VCNL SI L + FD++ Sbjct: 400 YKDACNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFR 459 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++ L+ VID N + +E+A++SN +R IG+G+ G +L + + S A + Sbjct: 460 RVVKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSL 519 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E + + A+ AS ELA++ G + S++GS +G+F + G A + Sbjct: 520 NQDIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKA----------SG 569 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ L++R++ G+RNS +A+ PTA + I G +++ +P N+Y + +G+F +V Sbjct: 570 NWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIV 629 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LVN+L + LW M + + ++GSI NI IP ++++I+ TA+EI +I+ A+ Sbjct: 630 NQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAAD 689 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921 RQ ++DQ+QSLN+++ +P+ +L ++ + GLKT YYLR+R TS K T VD Sbjct: 690 RQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFT---VDK 746 Query: 922 KLNAVPVTDPNSSTHSLGIPSS 943 KL ++ N + + SS Sbjct: 747 KLAEKTLSSMNDTDDPCSMCSS 768 >gi|150864273|ref|XP_001383025.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces stipitis CBS 6054] gi|149385529|gb|ABN64996.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces stipitis CBS 6054] Length = 891 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 255/640 (39%), Positives = 370/640 (57%), Gaps = 34/640 (5%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 ++ +RDF Y ++ L Y L IN E PQ F+RVA+G+ + VE Y Sbjct: 169 IEKDRDFDLTYFAIKTLERSYLLKINDEMAETPQYMFLRVAIGIHGNNLDD---VVETYE 225 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403 L+SS +F+ ++PTLFN+G+ + LSSCFL + DD + GI+ L + A+++K SGG+G + Sbjct: 226 LMSSRYFIHASPTLFNAGSEYNYLSSCFLVDMEDDSIDGIYKTLHKTALISKASGGIGLN 285 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462 +R G+ I TNG S G++P L+V NDTA V+QGG KR GA Y+E WH D+ Sbjct: 286 VHNIRASGSLIASTNGTSSGLVPMLRVFNDTARYVDQGGNKRPGAFAIYIEPWHADIFSV 345 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD++KN G + R D+ A WIPDLFM++V + W LFSPDE L D YG EF Y Sbjct: 346 LDMKKNHGKEELRARDLFFALWIPDLFMQKVKDDEDWCLFSPDEAPGLADCYGDEFVDLY 405 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE E + + A LW +L ETG P++ +KD CN +S Q+++G + SS Sbjct: 406 NQYE-----AEGRARTVVKAHKLWLAILESQTETGGPYMLYKDSCNRKSNQKNLGTIKSS 460 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN----------QFDYDKLASTIRTAVRVL 632 NLC EI SSEETAVCNLGS+ L A + +FD++KL S + R L Sbjct: 461 NLCCEIVEYCSSEETAVCNLGSLALPAFIKSVSIDNSDEEVLEFDFEKLHSITKVLTRNL 520 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VID+ + +E K SN HR I LG+ G L +P++S EA ++ + E I Sbjct: 521 NKVIDVTLYPVESTKVSNMKHRPIALGVQGLADVFLELRLPFSSDEAKKLNIQIFETIYH 580 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELK 750 A+ ASVELA G Y+SF+GS +G+ D L ++ S L WD LK Sbjct: 581 AAVEASVELAMSEGPYNSFEGSPASKGILQFD-----------LWDHKPSELYNDWDSLK 629 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + VKT G+RNS +A PTA+ + I G ++ +P NLY + ++G++ V N +LV +L Sbjct: 630 ESVKTHGLRNSLLVAPMPTASTSQILGYNECFEPYTSNLYTRRVLAGEYQVANKYLVKDL 689 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 LW+ A+ + + +GSI NI IP +LK+++ T +EI +I+ A+ R K+IDQ+ Sbjct: 690 IDLGLWNSAVRNKIIVDNGSIQNISSIPQELKELYKTVWEISQKVIIDMAADRGKFIDQS 749 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 QS+N++L P+ KL + W GLKT YYLR+++A+ Sbjct: 750 QSMNIHLQNPTFGKLTSCHFYGWQKGLKTGMYYLRTQAAS 789 >gi|2244677|emb|CAA67423.1| ribonucleotide reductase [Spodoptera littoralis NPV] Length = 781 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 259/774 (33%), Positives = 427/774 (55%), Gaps = 46/774 (5%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + ++ + Sbjct: 6 DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 65 Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + +Y+ + AR + L +E V+ +Y+ + T + Sbjct: 66 MTIDHSDYSLLAARLAVSNLHKETKDLFFNVIVDMYEAIDQKTGAATPMISD-------- 117 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ Sbjct: 118 -------FHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 170 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ + A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + +D + Sbjct: 171 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 227 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQ Sbjct: 228 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 287 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W Sbjct: 288 GGNKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 347 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L + EFE YE YE+Q + +++SA LWR ++ ETG P Sbjct: 348 SLMCPMQSPGLAIVTVFEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 402 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617 ++ +KD CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D Sbjct: 403 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 462 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +++L ++ R L+ +ID N + +A++SN +R IG+G+ G A + +P+ S Sbjct: 463 FERLKEITKSCDRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPFESD 522 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A E+ + E I + A+ A+ ELA + G Y ++KGS +G D Sbjct: 523 AAAELNKKIFETIFYGALEANCELAAKDGPYETYKGSPASRGELQYDMWN---------G 573 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 574 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 633 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I Sbjct: 634 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 693 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 A+ R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + Sbjct: 694 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVN 747 >gi|155371048|ref|YP_001426582.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella virus 1] gi|155124368|gb|ABT16235.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella virus 1] Length = 763 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/741 (35%), Positives = 409/741 (55%), Gaps = 40/741 (5%) Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230 +GL+ S+IV S ++ D ++ L+ + +++ P+Y + AR + L + Sbjct: 47 NGLEVDISRIVAS-ICSSVVDNITTVQLDDLTADKAASMVTNHPDYGILAARIAVSNLHK 105 Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + +V T+ +M + + F + + HE +F + +KY+RD Sbjct: 106 QSSDSVVD-----TYTKMSSMLSDEFMQVVRA-------HEQ--EFQAL-----VKYDRD 146 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 + F+Y G + Y ++G +E PQ ++RVA+ L ++ K K E Y+ LS Sbjct: 147 YDFDYFGFSTMKRLYLTKVDGKVVERPQHTYLRVAIALWGEDIAKVK---ETYDALSKRK 203 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F ++PTLFN+G R+ L+SCFL V D L IF +L + A L+K+ GG+G + +RG Sbjct: 204 FTHASPTLFNAGFRNANLASCFLVHVDDSLTNIFKSLGDVAQLSKFGGGIGLHLSDIRGR 263 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G+ I GTNG+S G++P LKV + T+ NQGG+RKG+ YLE H D+ +FL LR+N G Sbjct: 264 GSKIQGTNGESDGIVPMLKVYDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQG 323 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 ++ +R ++ A W+ DLFMKRV + W+LF P E L D +GKE+E Y YE + Sbjct: 324 EETQRARNLFYAMWLNDLFMKRVEADVAWSLFDPKECPGLTDAFGKEYEDLYLRYESEGR 383 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 ++ + A +W M+ ETG P++ KD N+++ Q + G + SNLC EI Sbjct: 384 AKKV-----VKARDVWNAMIITQIETGMPYVLNKDSVNVKNMQSNAGTITGSNLCAEIVE 438 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 +S++ETAVC +GSI L + N +D++ L ++ + LD ID+ + I +AK SN Sbjct: 439 YTSTDETAVCVIGSIVLQNYVKNGAYDFEDLRKHVKILAKNLDKSIDVMSYAIPEAKTSN 498 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R IG+G+ G Q L +P+ S A + E E I F A+ AS ELA+E G + + Sbjct: 499 MRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPT 558 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F+GS +GV G +RL W L++RVK G+RNS A+ PTA Sbjct: 559 FEGSPASRGVMQYHLWG----------TEPVTRLDWKTLEERVKK-GVRNSLTTALMPTA 607 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + A ICG ++++P NLY + ++G+F VVN++LV +L R W EAM + + + GS Sbjct: 608 STAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGS 667 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I + I +LK I+ TA+E+ +I+ A+ R ++DQ QS+NL++ PS K + + Sbjct: 668 IQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLF 727 Query: 891 QAWLMGLKT-TYYLRSRSATS 910 AW GLKT YY RS+ A + Sbjct: 728 YAWKKGLKTLMYYCRSKPAAN 748 >gi|20070048|ref|NP_613252.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata NPV-A] gi|20043442|gb|AAM09277.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata NPV-A] gi|33331880|gb|AAQ11188.1| putative ribonucletide reductase large subunit-like protein [Mamestra configurata NPV-A] Length = 761 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 267/817 (32%), Positives = 441/817 (53%), Gaps = 64/817 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG L + +L + C L Q V + V + K++ D + D++ Sbjct: 1 MYVVKRDGRLEQVSPSKLHNRIHRLCHDLNSQFVHPRAVSLKVIKSLSDHTTTEDIDIYA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + TL K +Y + R L+ + + V + K Q+ H + +E Sbjct: 61 ASVAATLTYKHYDYDMLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS----------DE 110 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + H +++ ++ D+K + D+ Y G Q L + Y + IN E Q M Sbjct: 111 LLLVTIKHSKIIEENI-----DMKLDLDY--NYFGYQTLKNGYLIKINEKVAERIQHMHM 163 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 R+A+G+ + + A++ Y LS+ + ++PT+F +GT PQ+SSCFL T+ D + Sbjct: 164 RIALGIFGDDIDN---AIKSYKFLSTKMYTHASPTMFAAGTPTPQMSSCFLLTMESDSIR 220 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L + AM++K+ GG+G + VRG + I TNG + G++P L+V N+ VNQG Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVNQG 280 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA Y+E WH D+ + L +R+N G + + D+ A W+PD+FM+RV +N W+L Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMRRVQENGRWSL 340 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E +L++ +G EFE Y++YE D+G+ + ++ AV L R ++ + ETG P++ Sbjct: 341 MCPNECPELNNTFGDEFEYWYKHYE---DKGQFR--DQMPAVTLMRTIIEIQAETGTPYM 395 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD CN +S Q + G++ SNLC EI + +ETAVCNL SI + + N FD+ L Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIINGTFDFQLL 455 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 S ++ V L+ +ID N + +E AKKSN HR IG+G+ G A +L IPY S AV Sbjct: 456 HSVVKHVVISLNKIIDRNFYPVEAAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E + A+ AS++LA + YS+F GS QG+ D + T Sbjct: 516 LNKQISETVYHAALDASLKLASDSEPYSTFAGSKASQGILQYDLWNAIP----------T 565 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S W +LK ++ G+RNS +A PTAT A I ++S +P + NL+++ +SG+F V Sbjct: 566 SLWDWSQLKMNIQKHGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858 VN +LV++L +L+ +M + + GSI +I+ IPD++KK++ T +E + ++I+ Sbjct: 626 VNRYLVDDLIALNLYTSSMRKRIMANRGSIASIDEIPDNIKKLYMTIWECWHNNGKFMID 685 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+Y+ +P+ K+ ++ W GLKT YY R+ A + ++ T+ Sbjct: 686 MAADRGAFIDQSQSFNVYMADPTLAKMASVHMYGWQRGLKTGMYYFRTLPAANSQQFTVA 745 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 PN CT +++C CQ Sbjct: 746 -------------PN---------LECTKNSDCASCQ 760 >gi|269105097|ref|ZP_06157792.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268160732|gb|EEZ39230.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 647 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 250/660 (37%), Positives = 379/660 (57%), Gaps = 38/660 (5%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 V +YDG+ ++++ L ++ +L + P+YAK+ AR ++ L++E T+ Y Sbjct: 13 VAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSLQKE--TSGYATA 70 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + E+ L Y ++ K + E M+D Y+RD+ F+Y G + Sbjct: 71 TRELS-EIGILSSAY----VDFVAKNQFALEDMID-----------YKRDYQFDYFGYKT 114 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L Y L + G +E PQ FMRVA+ +A + E+ + E Y+LLS ++ +TPTLFN Sbjct: 115 LERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLLSLCYYTHATPTLFN 171 Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G + QLSSCFL + +D + GI+ L++ A+++K +GG+G +R GA I GTNG Sbjct: 172 AGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNG 231 Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S G++P LKV N+TA V+QGG KRKG+ YLE WH D+E FLDLRKN G + R D Sbjct: 232 VSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARD 291 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + A W+PDLFM+RV +A WTLFSP L DLYG EF Y+ YER + Sbjct: 292 LFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYERMG-----LGVK 346 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I A L +++ ETG P++ +KD CN +S Q+++G + SSNLC EI S+ +ETA Sbjct: 347 TIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETA 406 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNL S+ L N FD+DKL + A++ LD VID+N H +K +KSNH HR +GL Sbjct: 407 ACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGL 466 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G +H+P+ S EA+ + + E + ++ AS E+A+++G YSS+ GS Sbjct: 467 GIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKGTYSSYDGSPISH 526 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G F D L E +SR W +LK ++ G+RNS +A PTA+ A I G Sbjct: 527 GQFQFD---LWCE-------QPSSRWDWSQLKHQIAEHGVRNSLLIAQMPTASTAQILGN 576 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 +++ + N+Y + +SG+F ++N +LV++L+QR LW + + ++GS+ I+ IP Sbjct: 577 NEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIP 636 >gi|228861716|ref|YP_002854736.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus] gi|226425164|gb|ACO53576.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 769 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/776 (33%), Positives = 430/776 (55%), Gaps = 51/776 (6%) Query: 158 NSKRLEMIVEEACSGLQDVSSKI---------VLSETYKNMYDGLSESDLETALIFSSRT 208 N K+ + +++ S LQ +S + + + K +Y G+S +L+ + Sbjct: 14 NGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTEELDMHAARETAN 73 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + +YA + R +++ L + V + + ++ H + V L Sbjct: 74 MAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNL---------------VSDEL 118 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L S++ + + L + + + D+ ++Y G + L + Y I E Q MRVA+G+ Sbjct: 119 L--SIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKVAERIQHMLMRVAIGV 176 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGAL 387 ++ E A E Y+L+S F ++PTLF +GT+ PQLSSCFL T+ +D + GI+ L Sbjct: 177 HGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTLREDSITGIYETL 233 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++ A+++K+ GG+G + VRG G+ I T+G + G+ L+V N+ V+QGGKRKGA Sbjct: 234 RDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAVRHVDQGGKRKGA 293 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 + YLE WH+DV +FL+L++N G + ++ D+ A W+PDLFM+RV + W+L PD Sbjct: 294 MAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMCPDRC 353 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L D+YG +F+ Y YER+ K ++ A L++ ++ ETG P++ +KD C Sbjct: 354 PGLSDVYGNQFDELYAQYEREG-----KQVSQVPARDLFKFIIETQVETGTPYMLYKDAC 408 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N ++ Q ++G + SNLC+EI S +++ AVCNL SI + N F++ L +T Sbjct: 409 NRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGAFNFQTLKRITKT 468 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 V+ L+ +ID+N + +E+A+ SN HR +G+G+ G A +L +PY S EA + + Sbjct: 469 VVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYESDEAKLLNTQIA 528 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I + A+ AS ELA+ GAY S+ GS +G+ D T+ W Sbjct: 529 ETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----------TNLWDWS 578 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 LK+R+ T G+RNS +A PTAT A I G ++S +P NLYV+ ++GDF V+N LV Sbjct: 579 VLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVLAGDFQVINHHLV 638 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 ++L +L+DE M +++ GS+ I IP+ +K+++ T +E+ LIE A R + Sbjct: 639 DDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKRLIEMAVDRGAYT 698 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917 DQ+QS N+++ EP+ ++ I+ AW GLKT YYLR++ A +V+KS L+ Sbjct: 699 DQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQFTVDKSKLR 754 >gi|62084010|emb|CAI72629.1| ribonucleotide reductase, large subunit [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 769 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/776 (33%), Positives = 430/776 (55%), Gaps = 51/776 (6%) Query: 158 NSKRLEMIVEEACSGLQDVSSKI---------VLSETYKNMYDGLSESDLETALIFSSRT 208 N K+ + +++ S LQ +S + + + K +Y G+S +L+ + Sbjct: 14 NGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTEELDMHAARETAN 73 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + +YA + R +++ L + V + + ++ H + V L Sbjct: 74 MAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNL---------------VSDEL 118 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L S++ + + L + + + D+ ++Y G + L + Y I E Q MRVA+G+ Sbjct: 119 L--SIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKIAERIQHMLMRVAIGV 176 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGAL 387 ++ E A E Y+L+S F ++PTLF +GT+ PQLSSCFL T+ +D + GI+ L Sbjct: 177 HGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTLREDSITGIYETL 233 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++ A+++K+ GG+G + VRG G+ I T+G + G+ L+V N+ V+QGGKRKGA Sbjct: 234 RDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAVRHVDQGGKRKGA 293 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 + YLE WH+DV +FL+L++N G + ++ D+ A W+PDLFM+RV + W+L PD Sbjct: 294 MAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMCPDRC 353 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L D+YG +F+ Y YER+ K ++ A L++ ++ ETG P++ +KD C Sbjct: 354 PGLSDVYGNQFDELYAQYEREG-----KQVSQVPARDLFKFIIETQVETGTPYMLYKDAC 408 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N ++ Q ++G + SNLC+EI S +++ AVCNL SI + N F++ L +T Sbjct: 409 NRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGAFNFQTLKRITKT 468 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 V+ L+ +ID+N + +E+A+ SN HR +G+G+ G A +L +PY S EA + + Sbjct: 469 VVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYESDEAKLLNTQIA 528 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I + A+ AS ELA+ GAY S+ GS +G+ D T+ W Sbjct: 529 ETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----------TNLWDWS 578 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 LK+R+ T G+RNS +A PTAT A I G ++S +P NLYV+ ++GDF V+N LV Sbjct: 579 VLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVLAGDFQVINHHLV 638 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 ++L +L+DE M +++ GS+ I IP+ +K+++ T +E+ LIE A R + Sbjct: 639 DDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKRLIEMAVDRGAYT 698 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917 DQ+QS N+++ EP+ ++ I+ AW GLKT YYLR++ A +V+KS L+ Sbjct: 699 DQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQFTVDKSKLR 754 >gi|294471329|gb|ADE80913.1| RR1 [Spodoptera litura NPV] Length = 770 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 262/765 (34%), Positives = 425/765 (55%), Gaps = 37/765 (4%) Query: 161 RLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 +++ +E+ C GL V+ V + +Y G++ ++L+ + ++ + +Y+ Sbjct: 20 KIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIAETAAAMTIDHSDYSL 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL---HESMMD 275 + AR + L +E + + + Y + GVK ++ H +++ Sbjct: 80 LAARLAVSNLHKETKDSFF-----------DVIIDMYEAIDPKTGVKTPMISNFHYNIIA 128 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 + L + + ++RDF ++Y G + + Y ING +E PQ MRVA+G+ E Sbjct: 129 ANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMRVAIGI---HGED 185 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLA 394 A++ YNL+S+ +F ++PTLF++ T Q+SSCFL T D + GI+ L++ AM++ Sbjct: 186 IDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEGIYDTLKQCAMIS 245 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K GG+G VR G+ + G G S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 246 KSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGGNKRPGAFAVYLE 305 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV ++ W+L P + L D Sbjct: 306 PWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMCPMQSPGLADC 365 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG EF+ Y+ YE + + R++ A +WR ++ ETG P++ +KD CN +S Q Sbjct: 366 YGAEFDALYQKYEEEG-----RYVRRVHAQTMWRAIIESQVETGTPYMLYKDSCNRKSNQ 420 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVL 632 ++G + SNLCTEI +S +E AVCNL SI + + +D++KL + R L Sbjct: 421 SNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVLQSGVYDFEKLKKITKIVTRNL 480 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + ID N + + +AK SN +R IG+G+ G A ++ +PY S A E+ + E I + Sbjct: 481 NRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKIFETIYY 540 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS ELA G Y +++GS +GV D + D + + W LK + Sbjct: 541 GALEASCELAAIYGPYETYEGSPASRGVLQYD-------MWDNVT--PSDLWDWSMLKSK 591 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VVN LV +L Sbjct: 592 ISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLTA 651 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW++ + + + +++GS+ IE IP ++++++ T +E+ LI A+ R +IDQ+QS Sbjct: 652 IGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMAADRGAFIDQSQS 711 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+Y+D PS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 712 FNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 756 >gi|15617495|ref|NP_258291.1| RR1 [Spodoptera litura NPV] gi|15553231|gb|AAL01709.1|AF325155_21 ribonucleotide reductase [Spodoptera litura NPV] Length = 770 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 262/765 (34%), Positives = 425/765 (55%), Gaps = 37/765 (4%) Query: 161 RLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 +++ +E+ C GL V+ V + +Y G++ ++L+ + ++ + +Y+ Sbjct: 20 KIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIAETAAAMTIDHSDYSL 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL---HESMMD 275 + AR + L +E + + + Y + GVK ++ H +++ Sbjct: 80 LAARLAVSNLHKETKDSFF-----------DVIIDMYEAIDPKTGVKTPMISNFHYNIIA 128 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 + L + + ++RDF ++Y G + + Y ING +E PQ MRVA+G+ E Sbjct: 129 ANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMRVAIGI---HGED 185 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLA 394 A++ YNL+S+ +F ++PTLF++ T Q+SSCFL T D + GI+ L++ AM++ Sbjct: 186 IDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEGIYDTLKQCAMIS 245 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K GG+G VR G+ + G G S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 246 KSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGGNKRPGAFAVYLE 305 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV ++ W+L P + L D Sbjct: 306 PWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMCPMQSPGLADC 365 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG EF+ Y+ YE + + R++ A +WR ++ ETG P++ +KD CN +S Q Sbjct: 366 YGAEFDALYQKYEEEG-----RYVRRVHAQTMWRAIIESQVETGTPYMLYKDSCNRKSNQ 420 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632 ++G + SNLCTEI +S +E AVCNL SI + + +D++KL + R L Sbjct: 421 SNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVVQSGVYDFEKLKKITKIVTRNL 480 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + ID N + + +AK SN +R IG+G+ G A ++ +PY S A E+ + E I + Sbjct: 481 NRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKIFETIYY 540 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS ELA G Y +++GS +GV D + D + + W LK + Sbjct: 541 GALEASCELAAIYGPYETYEGSPASRGVLQYD-------MWDNVT--PSDLWDWSMLKSK 591 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VVN LV +L Sbjct: 592 ISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLTA 651 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW++ + + + +++GS+ IE IP ++++++ T +E+ LI A+ R +IDQ+QS Sbjct: 652 IGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMAADRGAFIDQSQS 711 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 N+Y+D PS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 712 FNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 756 >gi|225164891|ref|ZP_03727110.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800505|gb|EEG18882.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 608 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 251/572 (43%), Positives = 345/572 (60%), Gaps = 42/572 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RN V F P KI A+ KAF++++ S + + + ++E+ H Sbjct: 51 RVIRRNHQVVPFLPQKIEVAVRKAFLSLD----RDSTPAEAVTQAVSERI------HASR 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA--QSHSKSDAPIAPKLK- 146 H+E+IQD V+ LM++GH+K+ Y++YR R + RA Q + S P LK Sbjct: 101 QAFAHVEEIQDIVQEELMKAGHYKVAEAYIIYRALRHNGRATSIQPDAASAGSEIPDLKP 160 Query: 147 ------------IMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGL 193 + DGT + ++ L + +E A GL ++ + + +++YD + Sbjct: 161 QIRSGDADTMIVVTQPDGTTLLWDRTDLRLRIEFARIGLDLCLTPAEIETALTRSLYDQI 220 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 + DL+ +I +S+TLIE++ ++AK R L + EVL + + +++ + Sbjct: 221 TRRDLDQTIILNSKTLIERDADFAKFAGRIQLTYIYEEVL---HWDIVRDGIGKLKTAHQ 277 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312 F +++ G L+ ++D+DL LA L D ++LG+Q LYDRY + + Sbjct: 278 AAFKKHLAHGAAIHRLNPRLLDYDLDKLAAALDPSADLELDFLGIQTLYDRYLVTDKTTN 337 Query: 313 -----RIEMPQAFFMRVAMGLALKET-----EKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 R+E PQ F+MRVAMGL L + ++E+R Y L S F STPTLFNSG Sbjct: 338 PAAPRRLETPQLFWMRVAMGLFLDDGDPATGQREQRITALYELYKSRRFCSSTPTLFNSG 397 Query: 363 TRHPQLSSCFLTTVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T H QLSSC+L T+ D L I + ENA L+K++GGLG WT VRG GAHI GTNG+S Sbjct: 398 TLHSQLSSCYLYTIDDSLESIMTRGIAENAQLSKWAGGLGGSWTAVRGTGAHIAGTNGES 457 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGVIPFLK+ ND AVNQGGKRKG+ CAYLETWH D+ EFL+LRKNTGDDRRRTHDMNT Sbjct: 458 QGVIPFLKLHNDQLNAVNQGGKRKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNT 517 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKR+ WTLF +V DLH+LYG++FE AY YE A G+I R I+ Sbjct: 518 ANWIPDLFMKRMEAREHWTLFHSSDVPDLHELYGRKFEDAYLRYETLAAEGKIHGHR-IA 576 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 A+ LW+KML+MLFETGH W+TFKD CNIRSPQ Sbjct: 577 ALDLWKKMLSMLFETGHTWLTFKDACNIRSPQ 608 >gi|323308679|gb|EGA61920.1| Rnr3p [Saccharomyces cerevisiae FostersO] Length = 887 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 265/740 (35%), Positives = 407/740 (55%), Gaps = 40/740 (5%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ + + P+YA + AR + L ++ T + K + H + Sbjct: 63 VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 ++ +E + ++ ++ +VY +RDF + Y G + L Y L Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +NG E PQ MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+ Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + DD + GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++V N+TA V+QGG KR GA +LE WH D+ +F+D+RK G + R D+ A WIP Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV ++ WTLFSP L D++G EFE Y YER+ RG + I A LW Sbjct: 352 DLFMKRVQEDGPWTLFSPSXAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405 Query: 547 RKMLTMLFETGH--PWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +L ETG+ PW +KD C QQ++G + SSNLC EI SS +ETAVCNL Sbjct: 406 YAILQAQTETGNTFPWF-YKDACKQEGQNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLA 464 Query: 604 SINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 SI L A ++ +++++L + L+ VID N + + +A+ SN HR I Sbjct: 465 SIALPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIA 524 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+ G +L +P+ S EA + + E I + AS ELAQ+ G YS+F+GS Sbjct: 525 LGVQGLADTXMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPAS 584 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 +G+ D W+ L+K + G+RNS MA PTA+ + I G Sbjct: 585 KGILQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILG 634 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 ++ +P N+Y + +SG+F VVN +L+ +L +WD++M L +GSI + + Sbjct: 635 YNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNV 694 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P +LK+++ T +EI +I A+ R +IDQ+ SLNL+L PS K+ ++ W GL Sbjct: 695 PQELKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGL 754 Query: 898 KT-TYYLRSRSATSVEKSTL 916 KT YYLR+++A++ + T+ Sbjct: 755 KTGMYYLRTQAASAAIQFTI 774 >gi|299472902|emb|CBN80471.1| EsV-1-180 [Ectocarpus siliculosus] Length = 766 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 271/795 (34%), Positives = 418/795 (52%), Gaps = 62/795 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + +Y G++ ++L+T ++ + P+Y+ + R Sbjct: 25 IKKLCYGLDSRYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGRI 84 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + L H E + + E + G+ A +H ++ D + L Sbjct: 85 AVSSL----------------HKETKESFVETMADLHDYGMVADDVHAAIQD-NAHLLDG 127 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + Y +D +++ + L Y L I+G+ +E Q MRVA+G+ + E ++ Y Sbjct: 128 AIDYGKDLEYDFFAFKTLEKSYLLKIDGNIVERIQHMLMRVAVGIHKDDIES---VLDTY 184 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 LS +TPTLFN+GT + QLSSCFL + DD + GI+ L++ A ++K++GG+G Sbjct: 185 TELSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDSVDGIYDTLKQTAKISKFAGGIGL 244 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R G++I GTNG S G++P L+ TA +NQ G+RKG+ YLE WH D+ EF Sbjct: 245 SVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFINQAGRRKGSFAMYLEMWHADILEF 304 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL+KN G++ R D+ W+ DLFM RV + WTL SP + DL DL+G +F+ AY Sbjct: 305 LDLKKNNGNELMRARDLFYGLWVSDLFMHRVKADGDWTLLSPSDAPDLIDLHGADFDRAY 364 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E YE + + I A L+ K++ ETG P+ FKD CN +S QQH+G + SS Sbjct: 365 EKYESDG------IGKTIKARTLFAKVVESQIETGGPYYLFKDSCNAKSNQQHLGTIRSS 418 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCH 641 NLC E+ SS EE AVCNL SINL+ H ++ FD+++L T + A++ L+ VID N + Sbjct: 419 NLCAEVIQYSSKEEIAVCNLASINLVRHVKPDKTFDFERLHKTAKQAIKNLNKVIDANFY 478 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +E+ SN HR GLG+ ++ P+ S EA + + E I ++ AS+E Sbjct: 479 PLEECSLSNMKHRPCGLGVQALHDVFMVMGFPFESEEAATLNKQIFETIYHGSVEASIER 538 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ G Y SF+GS G D G EV D SR W +++ +KT GMRNS Sbjct: 539 AKIDGPYESFQGSPASFGKLQFDLWG--HEVDD-------SRHDWTKIRGDLKTYGMRNS 589 Query: 762 NCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 A+ PTA+ A+ C G +++ + S LY + +SG+F +VN +L+ EL + LWD M Sbjct: 590 LLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSGEFPIVNKYLIRELIKLGLWDGEM 649 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + GS+ IE IP+ + + +E+ +IE A+ R +IDQ+QS+N++ + P Sbjct: 650 KNAIIRGGGSVQGIESIPEKTRMLFKNVWEVSQKAVIEQAAARGPYIDQSQSMNIFFERP 709 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 + K+ W +GLKT +YY+RSR PV DP T S Sbjct: 710 TVAKISSALFYGWKLGLKTASYYVRSR--------------------PVADPVQFTVSPE 749 Query: 940 IP-SSCTSDTECEVC 953 P D EC C Sbjct: 750 EPVGDEEDDKECLDC 764 >gi|13242650|ref|NP_077665.1| EsV-1-180 [Ectocarpus siliculosus virus 1] gi|13177450|gb|AAK14594.1|AF204951_179 EsV-1-180 [Ectocarpus siliculosus virus 1] Length = 765 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 258/747 (34%), Positives = 406/747 (54%), Gaps = 41/747 (5%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL+ V + + +Y G++ ++L+T ++ + P+Y+ + R Sbjct: 25 IKKLCYGLEPNFVDHVAIAQKVISGVYTGVTTTELDTLAAETAAYMAIAHPDYSLLAGRI 84 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 + +L H E + + E G+ A +H + D + L Sbjct: 85 AVSRL----------------HKETKESFVETMADLHAYGMVADDVHTVIQD-NAHLLDG 127 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + Y +D +++ + L Y L I+G +E Q MRVA+G+ + E +E Y Sbjct: 128 AIDYGKDLEYDFFAFKTLEKSYLLKIDGKIVERIQHMLMRVAVGIHKDDIES---VLETY 184 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 +S +TPTLFN+GT + QLSSCFL + DD + GI+ L++ A ++K++GG+G Sbjct: 185 TGMSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDSVDGIYDTLKQTAKISKFAGGIGL 244 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R G++I GTNG S G++P L+ TA +NQ G+RKG+ YLE WH D+ EF Sbjct: 245 SVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFINQAGRRKGSFAMYLEVWHADILEF 304 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL+KN G++ R D+ W+ DLFM+RV + WTL SP + DL DL+G +F+ AY Sbjct: 305 LDLKKNNGNELMRARDLFYGLWVSDLFMRRVKADGDWTLLSPSDAPDLIDLHGADFDQAY 364 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + YE + + I A L+ K++ ETG P+ FKD CN +S Q+H+G + SS Sbjct: 365 KKYESNG------IGKTIKARTLFAKVVESQIETGGPYYLFKDACNAKSNQRHLGTIRSS 418 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 NLC E+ SS EE AVCNL SINL+ H A+ FD+++L T + A++ L+ VID+N + Sbjct: 419 NLCAEVIQYSSKEEIAVCNLASINLVRHVRADRTFDFERLHRTAKQAIKNLNKVIDVNFY 478 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +E+ + SN HR GLG+ ++ P+ S EA + + E I ++ AS+E Sbjct: 479 PLEECRLSNMKHRPCGLGVQALHDVYMVMGFPFESEEAATLNKQIFETIYHGSVEASIER 538 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ G Y SF+GS G D G EV D SR W + K ++ GMRNS Sbjct: 539 AKIDGPYESFQGSPASFGKLQFDLWG--HEVDD-------SRHDWTKTKADLQKYGMRNS 589 Query: 762 NCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 A+ PTA+ A+ C G +++ + S LY + +SG+F +VN +L+ EL LWD M Sbjct: 590 LLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSGEFPIVNKYLIKELINLGLWDGEM 649 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + GS+ IE IP+ + + +E+ +IE A+ R +IDQ+QS+N++ + P Sbjct: 650 KNAIIRGGGSVQGIESIPEKTRTLFKNVWEVSQKAIIEQAAARGPYIDQSQSMNIFFERP 709 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSR 906 + K+ W +GLKT +YY+RSR Sbjct: 710 TMAKISSALYYGWELGLKTASYYVRSR 736 >gi|15605686|ref|NP_213062.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5] gi|6225952|sp|O66503|RIR1_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|2982838|gb|AAC06460.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5] Length = 801 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 279/826 (33%), Positives = 426/826 (51%), Gaps = 122/826 (14%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ + ++ AC GL +V + ++ DG++ +++ LI ++ + E P++ Sbjct: 19 KIRIAIKFACEGL-NVDPLELEADAQIQFRDGITTKEIQQLLIKTAAEKVSAERPDWTYT 77 Query: 220 TARFLLEKLRREVL----TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 AR LL L ++V ++ K + + Y + Y+E+G+ L E+ + Sbjct: 78 AARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFY-SFVKEYVEKGIYGEYLLENYSE 136 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETE 334 D LAN +K ERD F Y G++ILYDRY + R IE+PQ +M +AM LA+ E Sbjct: 137 EDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELPQEMYMLIAMTLAVPEKP 196 Query: 335 KE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 +E K A +FY++LS +TPTL N+ QLSSCF+ TV DDL+ IF +++ M Sbjct: 197 EERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLTVDDDLFDIFDNVKKAGM 256 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++K++GGLG +R GA I G S GVIP +K+ NDT V+Q G RKG+ L Sbjct: 257 ISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDTMTYVDQLGMRKGSASITL 316 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------- 504 + WH D+ +FL+++ N GD+R++ HD++ A IPDLFMKR+ WTL P Sbjct: 317 DIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRLKNREDWTLIDPYWARQYIT 376 Query: 505 -------------------------DEVSD------LHDLYGKEFEIAYENYERQADRGE 533 D D L D YG+EFE Y E Sbjct: 377 RKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFYGEEFEKWYLELEENLPSYA 436 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC-------- 585 K K+++ LW+++LT+ FETG P+I F+D N ++P +H G+V+SSNLC Sbjct: 437 KK---KVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTGMVYSSNLCHEIVQTMS 493 Query: 586 -------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 EIT + + VCNLGS+NL +++ + VR+L Sbjct: 494 PSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNL-----GKVHTEEEIKEVLPLLVRML 548 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVI++N + I +A+ +N +RAIG+G+ + L I + S E ++ AD+ E I+F Sbjct: 549 DNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWESEEHLKFADKLFELIAF 608 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 +A+ S+ELA+ERG Y F GS W +G+ G E +E + + LPW EL + Sbjct: 609 YALKGSLELAKERGRYKLFDGSNWSKGIL----FGRSVEEIEENSRQNGNNLPWRELAEE 664 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RN+ +A+ PT + + I G + SIDP + Y + NMS Sbjct: 665 IKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMS---------------- 708 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKI---HATAFEIDPMWLIESASRRQKWIDQ 869 G + ++P ++ + + TA+ ID W I +A+ RQKWIDQ Sbjct: 709 -------------------GILPQVPPEVDRFYWHYKTAYTIDHEWTIRAAAVRQKWIDQ 749 Query: 870 AQSLNLYLDEPS--GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 AQSLNL++D + G +L +Y AW +GLKT YYLRSRSA +E+ Sbjct: 750 AQSLNLFVDPQNIDGPRLSRLYELAWELGLKTIYYLRSRSAMDIEE 795 >gi|193608391|ref|XP_001944671.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 802 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 265/832 (31%), Positives = 443/832 (53%), Gaps = 78/832 (9%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG L ++ + +E+ C GL + + ++ G++ ++ ++ Sbjct: 18 DGRLEEVLMDKITLRIEQLCDGLNMDFIDPPEITLYVIGDLCPGITTVQIDNLAAETAAY 77 Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 L K P++A + AR + L +E V+ +Y + M + ++ ++ Sbjct: 78 LTTKHPDFAVLAARIAISNLYKETKENFSDVIYDLYNMSNERNQSRMPIISDFHYGIVMK 137 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L N +K++RD+ + Y G + L Y L I+G +E PQ Sbjct: 138 HADR---------------LNNAIKHDRDYTYSYFGFKTLEKSYLLKIDGKVVERPQHLL 182 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 MRV++G+ ++ + A+E Y+L+S +F ++PT+FN+ T PQLSSCFL D Sbjct: 183 MRVSIGIHGEDIDA---AIETYDLMSLKYFTHASPTMFNASTPRPQLSSCFLVANKSDEL 239 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH--GTNG---------KSQGVIPFLKV 430 FG + S G G+G H+H G G +S G++ LKV Sbjct: 240 EDFGKTVKTCAKISQSAG---------GIGVHLHNVGAAGTKWTKYPKCESHGLVEPLKV 290 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 ND A ++QGG+R GAV Y+E WH D+ + +LRKNTG+ +T D+ A WIPD FM Sbjct: 291 LNDLAQYIDQGGRRPGAVAVYIEPWHADIYTYTELRKNTGNKEEKTRDLFLALWIPDEFM 350 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 +RV N W+L P + L D++G +F Y+ YE + K++ K + A LW ++ Sbjct: 351 RRVEANQSWSLMCPRKCPGLSDVWGDDFVKLYKKYEDE------KLYNKQVPARELWFRI 404 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NL 607 +T ETG P++ +KD CN +S Q+++G + SNLCTE+ +S EE AVCNL SI N+ Sbjct: 405 ITSQIETGMPYMLYKDACNAKSNQKNLGTIKCSNLCTEVIQYTSEEEVAVCNLASIAVNM 464 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 N ++D++KL + R L+ VID+N + + +A+ SN HR IG+G+ G Sbjct: 465 FVK-PNGEYDFEKLLKITKIVTRNLNKVIDVNFYPVIEAETSNKRHRPIGIGIQGLADLF 523 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L+ P+ SPE+ ++ + E + + A+ AS ELA++ G YSS++GS QG+ + Sbjct: 524 SLMRFPFGSPESRKLNIQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYE--- 580 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + V+ N W+ LK+++ G+RNS +A PTA+ A I G ++SI+P Sbjct: 581 -MWNVKPSSLWN------WEILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTT 633 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NLY + +SG+F+V+N L+N+L + +LW+E M + L + GS+ I+ IPD++K+++ T Sbjct: 634 NLYYRRTLSGEFSVINRHLLNDLIKLNLWNEDMRNKLIFFKGSVQKIKSIPDNIKELYKT 693 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 +E+ +++ A+ R +IDQ+QSLN+++++P+ K+ ++ W GLKT YYLR+R Sbjct: 694 NWELSQKIILDMAADRGAYIDQSQSLNIHIEQPTISKISSVHFYGWKKGLKTGMYYLRTR 753 Query: 907 SAT-----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 A +V+KST+ N T+ N + + + S + C +C Sbjct: 754 PAADPIQFTVDKSTVSN-----NVAIQTEKNDALNMEQLVCSLENKDACTMC 800 >gi|190347674|gb|EDK39996.2| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC 6260] Length = 814 Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust. Identities = 251/640 (39%), Positives = 372/640 (58%), Gaps = 28/640 (4%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD+ Y ++ L Y L GS E PQ FMRV++G+ ++ A+E Y Sbjct: 142 IDHRRDYELSYFAVKTLQKSYLLV--GS--ETPQYMFMRVSLGIHGQDVNS---AIETYT 194 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403 +S +F+ ++PTLFNSGT + LSSCFL + +D + GI+ L E A+++K SGG+G Sbjct: 195 YMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALISKASGGIGLH 254 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462 +R G+ I ++G S G++P L+V N+TA V+QGG KR GA YLE WH D+ E Sbjct: 255 VHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFEV 314 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL+KN G + R D+ A WIPDLFM+RV + W+ FSPD+ L + YG+EF+ Y Sbjct: 315 LDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLENCYGEEFKRLY 374 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E+YE A +KV R A LW +L ETG P++ +KD CN +S Q+++G + SS Sbjct: 375 ESYE--AKGLAMKVVR---AQKLWDAILDSQIETGGPYMLYKDACNEKSNQKNLGTIKSS 429 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLC E+ SS +E AVCNLGS+ L N+ FD L + V L+ VID+ + Sbjct: 430 NLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNLNKVIDVTAYP 489 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +E A+ SN HR I +G+ G L +P+ SP A E+ + E I A+ ASVELA Sbjct: 490 LESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYHAAVEASVELA 549 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRN 760 + G Y +F GS +G+ D L ++ S L WDELK++V GMRN Sbjct: 550 IKDGPYETFAGSPASKGLLQFD-----------LWNHKPSDLYTDWDELKQKVVKSGMRN 598 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +A PTA+ + I G ++ +P N+Y + ++G+F VVN +LV +L + +LW++ M Sbjct: 599 SLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTELNLWNKQM 658 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + GS+ NI+ IP ++ + T ++I +I+ A R K+IDQ+QSLN+++ P Sbjct: 659 KDRILVAGGSVMNIDEIPQHVRDVFKTVWDISQRTIIDMAVDRAKFIDQSQSLNIHMRNP 718 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + KL + AW GLKT YYLR++SA+ + T+ G+ Sbjct: 719 TKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGL 758 >gi|146414790|ref|XP_001483365.1| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC 6260] Length = 814 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 255/664 (38%), Positives = 378/664 (56%), Gaps = 30/664 (4%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD+ Y ++ L Y L GS E PQ FMRV++G+ ++ A+E Y Sbjct: 142 IDHRRDYELSYFAVKTLQKSYLLV--GS--ETPQYMFMRVSLGIHGQDVNS---AIETYT 194 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403 +S +F+ ++PTLFNSGT + LSSCFL + +D + GI+ L E A+++K SGG+G Sbjct: 195 YMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALISKASGGIGLH 254 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462 +R G+ I ++G S G++P L+V N+TA V+QGG KR GA YLE WH D+ E Sbjct: 255 VHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFEV 314 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL+KN G + R D+ A WIPDLFM+RV + W+ FSPD+ L + YG+EF+ Y Sbjct: 315 LDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLENCYGEEFKRLY 374 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E+YE A +KV R A LW +L ETG P++ +KD CN +S Q+++G + SS Sbjct: 375 ESYE--AKGLAMKVVR---AQKLWDAILDSQIETGGPYMLYKDACNEKSNQKNLGTIKSS 429 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLC E+ SS +E AVCNLGS+ L N+ FD L + V L+ VID+ + Sbjct: 430 NLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNLNKVIDVTAYP 489 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +E A+ SN HR I +G+ G L +P+ SP A E+ + E I A+ ASVELA Sbjct: 490 LESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYHAAVEASVELA 549 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRN 760 + G Y +F GS +G+ D L ++ S L WDELK++V GMRN Sbjct: 550 IKDGPYETFAGSPASKGLLQFD-----------LWNHKPSDLYTDWDELKQKVVKSGMRN 598 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +A PTA+ + I G ++ +P N+Y + ++G+F VVN +LV +L + +LW++ M Sbjct: 599 SLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTELNLWNKQM 658 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + GS+ NI+ IP ++ + T ++I +I+ A R K+IDQ QSLN+++ P Sbjct: 659 KDRILVAGGSVMNIDEIPQHVRDVFKTVWDILQRTIIDMAVDRAKFIDQLQSLNIHMRNP 718 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 + KL + AW GLKT YYLR++SA+ + T+ G+ A P+ + L Sbjct: 719 TKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSSA--ATPLKRKIDEVYELS 776 Query: 940 IPSS 943 P + Sbjct: 777 FPGT 780 >gi|327287998|ref|XP_003228715.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Anolis carolinensis] Length = 745 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 268/765 (35%), Positives = 409/765 (53%), Gaps = 98/765 (12%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNVDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRRE---VLTTV------YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + L +E V + V Y P + H M +E + L ++ + Sbjct: 82 AVSNLHKETKKVFSDVMEDLYTYVNPHNSKHSPM----------IAKETLDIVLANKDRL 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 + ++Y +RDF++ Y G + L Y L IN E PQ MRV++G+ + + Sbjct: 132 NSAIIY-------DRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVSVGIHKNDID 184 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393 A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L+ A++ Sbjct: 185 A---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKHCALI 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452 +K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YL Sbjct: 242 SKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L + Sbjct: 302 EPWHFDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 ++G+EFE YE+YE+Q +V R + A LW ++ ETG P++ +KD CN +S Sbjct: 362 VWGEEFEKLYESYEKQG-----RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 QQ++G + SNLCTEI +S++E V Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSNDEAEV--------------------------------- 443 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 SN HR IG+G+ G A L+ P+ SPEA + + E I + Sbjct: 444 ----------------SNKRHRPIGIGVQGLADAFILMRFPFESPEAQLLNQQIFETIYY 487 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS LA+E G Y +++G +G+ D ++ T W LK++ Sbjct: 488 AALEASCNLAKECGPYETYEGCPLSKGILQYDMWNVVP----------TDLWDWKALKEK 537 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L + Sbjct: 538 IAKHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTE 597 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R LW+E M + + +GSI I IPDDLK ++ T +EI +++ A+ R +IDQ+QS Sbjct: 598 RGLWNEEMKNQIIACNGSIQTIPEIPDDLKLLYKTVWEISQKTVLKMAADRGAFIDQSQS 657 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 LN+++ EP+ KL ++ W GLKT YYLR++ A + + TL Sbjct: 658 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 702 >gi|68304287|ref|YP_249755.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973116|gb|AAY84082.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 780 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 260/678 (38%), Positives = 394/678 (58%), Gaps = 39/678 (5%) Query: 285 LKYERDFAFEYLGLQILYD-RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + Y+ D + Y GL L + +Y + ++ +E PQ MRVA+ + + E A+E Y Sbjct: 133 ISYDFDKHYTYFGLMTLIEGKYLMRVDNIVVERPQHMLMRVALQIHGDDIES---AIESY 189 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 L+ + F ++PTLF+SG + PQ+SSC+L + +D + GI+ L + AM++K+ GG+G Sbjct: 190 RLMRAKLFTHASPTLFSSGMKMPQMSSCYLLNIQEDSINGIYKTLNDCAMISKHGGGIGL 249 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + T +R + I TNG + G+ P L+V N V+QGGKRKGA+ Y+E WH DV F Sbjct: 250 NVTQIRATNSKIESTNGTAAGLGPALRVFNSMLRHVDQGGKRKGAMTVYIEPWHADVFTF 309 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL++N G + + D+ A W PDLFMKRV W+L PDE L+D YG+EFE Y Sbjct: 310 LDLKRNMGAEDMKARDLLFAMWTPDLFMKRVKTGGKWSLMCPDECPGLNDCYGQEFEDLY 369 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 ENYE E K ++ISA+ L RK++ ETG P++ FKD N ++ Q++ GV+ +S Sbjct: 370 ENYE-----AEGKFKKQISALDLHRKIIETQVETGAPYMMFKDHVNNKNNQKNEGVIRNS 424 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDIN 639 NLC EI S + ETAVCNL SI + +FAN Q FD+ L + R L+ +ID+N Sbjct: 425 NLCAEIVQYSDNRETAVCNLASI-AVNNFANKQFKSFDFKSLYNVSRVVTNNLNKIIDLN 483 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + A+ SN HR IG+G+ G +L +PY S EA ++ + E I + A+S S+ Sbjct: 484 FYPLASAQASNFRHRPIGIGIQGLADTFAILDMPYDSQEARDLNKKISETIYYGALSQSI 543 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTIGM 758 ELA+ G Y S+ GS P S GLL D +N+++ L WDELK+ + G+ Sbjct: 544 ELAKLHGTYDSYDGS-------PA-SCGLLQ--FDLWNINQSNDLWNWDELKREMAMHGL 593 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS +A PTAT A I G ++S +P NLYV+ +SG++ VVN LV++L +++ Sbjct: 594 RNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQVVNQHLVDKLVDTNVYST 653 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ + ++GS+ NI+ IP ++K + TA+EI +++ A+ R +IDQ+QSLNL++ Sbjct: 654 DIMIKIIKNNGSVQNIDEIPHNIKALFKTAWEIKQKVVLDMAAERGPYIDQSQSLNLFVA 713 Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-NSSTH 936 P+ K L I+ +W GLKT YYLR++ A + + T VP + N + + Sbjct: 714 NPTYKVLSSIHDYSWEKGLKTGMYYLRTKPAANTIQFT----------VPSSSAINRANN 763 Query: 937 SLGIPSSCTSDTECEVCQ 954 + +C CE CQ Sbjct: 764 EPDVVDACY--IGCESCQ 779 >gi|50549777|ref|XP_502360.1| YALI0D03333p [Yarrowia lipolytica] gi|49648228|emb|CAG80548.1| YALI0D03333p [Yarrowia lipolytica] Length = 849 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 270/805 (33%), Positives = 428/805 (53%), Gaps = 69/805 (8%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231 VS+ + +T +DG+S +L ++ L+ + P+Y + AR + L ++ Sbjct: 33 VSATEIAQKTVDGAFDGVSTVELNNLASETAAALMTRHPDYGVLAARLSVSNLHKQTSDK 92 Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 V+ +Y + H V LL + + + LA + Y Sbjct: 93 FVNVMQQLYDNKDETGEHAPL--------------VTLALLERAQNHGETLELA--ISYY 136 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD + Y G + L Y L + G+ +E PQ MRVA+G+ + K + E Y LS Sbjct: 137 RDMTYSYFGFKTLEKSYLLRVGGNVVERPQHMLMRVALGIHGDDIFKVR---ETYQALSL 193 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F ++PTLFN+GT QLSSCFL + D + GI+ L+ A ++K +GG+G + Sbjct: 194 RKFTHASPTLFNAGTPQGQLSSCFLVAMAADSIDGIYDTLKTCAQISKTAGGIGLHIHNI 253 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R GA I G+ G+S G++P L+V N+TA V+QGG KR GA YLE WH D+ +FL+LR Sbjct: 254 RAKGALITGSQGRSSGIVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHADILDFLNLR 313 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KN G + R D+ A W+PDLFM++V W+LF P + L D++G+EF+ YE+YE Sbjct: 314 KNHGAEENRARDLFYALWVPDLFMRKVENGEKWSLFCPRKAPGLADVWGEEFDRKYEDYE 373 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + +I A L++ +LT ETG P++ +KD CN +S Q+++G + SSNLCT Sbjct: 374 SKGLYNS-----QIDAQELFKAILTSQIETGGPFMLYKDSCNAKSNQKNLGTIKSSNLCT 428 Query: 587 EITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 EI SS +E AVCNL S+ L ++ +++ +L T++ R L+ +I+ NC+ Sbjct: 429 EIVQYSSPDEVAVCNLASVALPEFVQLKGSSGSYNFGELHETVKHMTRNLNCIIEANCYP 488 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +++A+ SN HR I +G+ G L +P+ SPEA E+ E I A AS+ELA Sbjct: 489 VKEAETSNKRHRPIAVGVQGLADVFMKLRMPFDSPEAAELNVLIFETIYHAACEASIELA 548 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELKKRVKTIGMRN 760 E G Y +++GS QG D N+T WD LK ++ GMRN Sbjct: 549 AELGPYETYEGSPASQGKLQFD------------LWNKTPSDLWDWARLKTKLAKHGMRN 596 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +A PTA+ + I G ++ +P N+Y++ +G+F VVN +L+ +L + +W E M Sbjct: 597 SLLVAPMPTASTSQILGHNECFEPYTSNIYLRRVQAGEFLVVNQWLMKDLIKLGMWTEEM 656 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + + +GSI +I +IP+ ++ ++ TA+EI +I+ A+ R +IDQ+QSLN+++ E Sbjct: 657 KNRIIHDNGSIQSITQIPEHIRAVYRTAWEIKARNIIDMAAARAPYIDQSQSLNIFMPEI 716 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAV-PVT---- 929 + K+ ++ W GLKT YYLR+ A +V+K+ L+ + + V PV Sbjct: 717 THGKITAMHFHGWKAGLKTGMYYLRTPPAAHAIQFTVDKTLLQNIQDPVGEVDPVVYEPP 776 Query: 930 -------DPNSSTHSLGIPSSCTSD 947 P+ + PSS + D Sbjct: 777 SMPWASESPSGPSTRASTPSSLSRD 801 >gi|50310227|ref|XP_455133.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644269|emb|CAG97840.1| KLLA0F01188p [Kluyveromyces lactis] Length = 855 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 253/648 (39%), Positives = 375/648 (57%), Gaps = 22/648 (3%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 RD+ F Y G + L Y + N + E PQ FMRVA+ + + +E + L+S Sbjct: 157 RDYNFTYFGWKTLCKSYLMKRNNEQTHETPQFMFMRVALAIH-GPFDDIDSVLETFELMS 215 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTP 406 +F+ ++PTL NSGT + LSSCFL + DD + GI+ L + A+++K SGG+G + Sbjct: 216 QKYFIHASPTLCNSGTVNQYLSSCFLVGMEDDSIDGIYKTLHKTALISKASGGVGIHVSN 275 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDL 465 +R GA+I G+NG S G++P L+V N+TA V+QGG KR GA C YLE WH D+ +FL L Sbjct: 276 IRANGAYISGSNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFCIYLEPWHADIIDFLQL 335 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RKN G + R D+ A WIPDLFMKRV N W++FSPDE L D YG EF+ YE Y Sbjct: 336 RKNHGKEEMRARDLFYALWIPDLFMKRVENNEDWSIFSPDEAPGLTDCYGDEFDKLYERY 395 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E+ E+ +K+ A +W ++L ETG P++ +KD CN +S Q+++GV+ SSNLC Sbjct: 396 EK-----ELIPRKKMKAQQIWSEILQSQTETGVPFMLYKDACNKKSNQKNLGVIKSSNLC 450 Query: 586 TEITLNSSSEETAVCNLGSINL-----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 EI SS EE AVCNL S+ L L+ FD+ KL ++ V+ LD ID+ Sbjct: 451 CEIVEYSSPEEVAVCNLASVALPTYVNLSSDGPPVFDFVKLHHVVKVLVKNLDRTIDVGK 510 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + +A+ N +R + +G+ G L P+ S +A + + E I AI AS E Sbjct: 511 YPVPEARNGNIRNRPLAIGVQGLADTFMLCRTPFESVDAATLNKQIFETIYHAAIEASTE 570 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMR 759 LA+ G Y SF GS +G D L + L + WD LK R+ K G+R Sbjct: 571 LAELFGHYESFPGSPASEGQLQFDLWSLNKDNYKFLFDD------WDSLKSRITKGKGLR 624 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS + PTA+ + I G ++S +P N+Y + +SG+FT++N ++V++ Q +W+E Sbjct: 625 NSLLVGPMPTASTSQILGFTESFEPMTSNIYSRRVLSGEFTIINQYMVDDFCQLGIWNEK 684 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + + + +GSI IE IP+++K ++ T +E +I+ +S R +IDQ+QSLNLYL E Sbjct: 685 LKNRILRDNGSIQTIEGIPEEVKNLYKTVWETSQRKMIDLSSDRAPFIDQSQSLNLYLRE 744 Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAV 926 P+ KL ++ W GLKT YYLR+++A+ + TL + L+ V Sbjct: 745 PTMGKLTAMHFYTWKKGLKTGMYYLRTQAASRAIQFTLNDENTLLDKV 792 >gi|163781847|ref|ZP_02176847.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp. 128-5-R1-1] gi|159883067|gb|EDP76571.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp. 128-5-R1-1] Length = 767 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 281/813 (34%), Positives = 432/813 (53%), Gaps = 96/813 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ G + ++ + +E A GL +V + ++ DG++ +++ LI Sbjct: 1 MEVVKRSGKREQLDINKIRIALEFAFKGL-NVDPLELETDAQIQFRDGITTEEIQAVLIR 59 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREV-----------LTTVYKKPQKATHHEMQCLY 252 ++ + E P++ AR LL L ++V L+ YK + + Y Sbjct: 60 TAAEKVSPETPDWQFAAARLLLYDLYKKVAHIRGYEVRDELSKDYKP------YNTEGFY 113 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E+ R++ EG+ L + + D+ LA +K ERD F Y G++IL DRY Sbjct: 114 -EFINRFVGEGIYGDYLLKHYSESDIRDLAKHIKPERDLYFNYTGIKILTDRYLARDEDG 172 Query: 313 RI-EMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 RI E+PQ +M ++M LA+ KE ++ K A EFY+LLS +TPTL N+ QLS Sbjct: 173 RIIELPQEMYMLISMTLAIPEKEGDRVKWAKEFYDLLSEHLITVATPTLMNARRPFTQLS 232 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF+ TV DDLY IF +Q+ A ++K++GGLG +R GA I G S G+IP +K Sbjct: 233 SCFILTVDDDLYDIFDNVQKAAQISKHAGGLGIYIGKLRATGAPIRKFKGASSGIIPVVK 292 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 V ND V+Q G RKG+ L+ WH D+ +FL+++ N GD+R++ HD++ A IPDLF Sbjct: 293 VINDVMTYVDQLGMRKGSASITLDIWHKDILDFLEVKTNAGDERKKAHDIHPAISIPDLF 352 Query: 490 MKRVTQNAGWTLFSP------DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 MKRV WTL P + +L DL+G+ FE YE E++ K ++ A Sbjct: 353 MKRVKNREKWTLLDPYYTKNVRDGKNLEDLWGEAFEEEYERLEKELPEDAKK---EVDAF 409 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------- 593 LW+++LT+ FETG P++ F+D N +P +H G+V+SSNLC EI N S Sbjct: 410 ELWKRLLTVAFETGEPYLFFRDHANRINPNKHAGMVYSSNLCHEIVQNMSPTKHLGKELD 469 Query: 594 -----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 S + VCNLGS+NL + + + + VR+LDNVI++N + Sbjct: 470 PETGEIVHRKKSGDVVVCNLGSVNL-----GKVYTKETMEQVVPKLVRLLDNVIEMNYYA 524 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I +A+ +N +RAIG+G+ + L + + S + ++ AD+ E + F+AI S+ELA Sbjct: 525 IPEAEYTNKRYRAIGIGVSNYHYCLVKNGVNWESEDHLKFADKLFELLGFYAIKGSMELA 584 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +ERG Y F+GS W +G+F G AE +E + + LPW +L + V+ G+RNS Sbjct: 585 KERGKYRLFEGSDWSRGIF----FGRKAEELEENSKENGNDLPWKDLAEDVRENGIRNSY 640 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+ PT + + I G + S+DP + Y + NMSG V + R W Sbjct: 641 LLALMPTGSTSLILGATPSVDPIFAKYYKEENMSGILPQVPPEI-----DRFFWH----- 690 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EP 880 + +A+ ID W++ +A+ RQKWIDQAQSLNL++D + Sbjct: 691 ----------------------YKSAYNIDQEWVVRAAAVRQKWIDQAQSLNLFIDPEKI 728 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 G L IY+ AW +GLKT YYLRS+S T +E+ Sbjct: 729 DGPTLSKIYQLAWELGLKTIYYLRSKSITDIEE 761 >gi|90592870|ref|YP_529823.1| RR1 [Agrotis segetum nucleopolyhedrovirus] gi|71559320|gb|AAZ38319.1| RR1 [Agrotis segetum nucleopolyhedrovirus] Length = 779 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/632 (38%), Positives = 371/632 (58%), Gaps = 22/632 (3%) Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+ +++ G + L + Y L I+ E PQ MRVA+G+ + + A+E Y ++S Sbjct: 133 DYTYKFFGYKTLENGYLLKIDNQVAERPQHMLMRVALGIHGDDIQD---AIETYRMMSRK 189 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F ++PTLF++GT Q+ SCFL + D + GI+ L + A ++KY GGLG + VR Sbjct: 190 MFTHASPTLFSAGTPMAQMCSCFLLGIRSDSIDGIYETLGDCAAISKYGGGLGVNVHCVR 249 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I+ TNG + GV P ++V N+ V+QGGKRKGA+ Y+E WH D+ L+L++N Sbjct: 250 SRGTRINSTNGVASGVEPMVRVFNNMVRHVDQGGKRKGALAVYIEPWHADIYSVLNLKRN 309 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 G + + D+ A W+PDLFM+RV N W+L P++ L D YG FE Y YE + Sbjct: 310 MGAEDCKARDLMYALWVPDLFMERVNANGVWSLMCPNKCPGLSDCYGSAFEELYRKYEEE 369 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + +++ A L R ++ ETG P++ +KD CN +S QQ++G + SNLC EI Sbjct: 370 G-----RYQQQVRAQDLHRFIVETQVETGGPYMLYKDACNRKSNQQNLGTIKCSNLCAEI 424 Query: 589 TLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 S +EETAVCNL SI N +FD++KL + VR L+ +ID N + IE A Sbjct: 425 VQYSDAEETAVCNLASIAVNSCVVVDEARFDFEKLRHITKVVVRNLNKIIDRNRYPIESA 484 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + SN HR IG+G+ G A LL +PY S EA+ + + E I F A+ AS ELA+ G Sbjct: 485 RMSNMKHRPIGVGIQGLADAFVLLRMPYESDEAMLLNRQIAETIYFGALEASCELAKTWG 544 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 +YSSF+GS +G+ D + +VR TS W LK+ +K G+RNS +A Sbjct: 545 SYSSFQGSPASEGILQYD----MWDVRP------TSLWDWGTLKEDIKKHGLRNSLLVAY 594 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTAT A I G ++S +P N+Y++ ++G+F VVN +L+++L + L+ M + + Sbjct: 595 MPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIDDLIKLKLYTSEMRNAIFA 654 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 H GSI I+ IPD +K+++ TA+E+ +IE A+ R +IDQ+QSLNL++ EP+ + Sbjct: 655 HKGSIQAIDGIPDHIKRLYKTAWEMKCKRMIEMAADRNAFIDQSQSLNLFVAEPTYALMT 714 Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 I+ W GLKT YYLR++ A ++ T++ Sbjct: 715 SIHDYTWRSGLKTGMYYLRTKPAAHTQQFTVE 746 >gi|9632159|ref|NP_048985.1| hypothetical protein PBCV1_A629R [Paramecium bursaria Chlorella virus 1] gi|2447101|gb|AAC96959.1| similar to Schizosaccharomyces ribonucleotide reductase M1 chain, corresponds to Swiss-Prot Accession Number P36602 [Paramecium bursaria Chlorella virus 1] Length = 771 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 272/747 (36%), Positives = 415/747 (55%), Gaps = 48/747 (6%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228 A +GL SKIV S ++ DG+S L+ S ++ + P+Y + AR + L Sbjct: 53 AMTGLNVDVSKIVAS-VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNL 111 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND---- 284 QK TH ++ Y E A LL+E + +L A++ Sbjct: 112 ------------QKQTHDKITDAYAEI----------AHLLNEDFKE-NLEKHADEYQAF 148 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y+RD+ F+Y G + + Y + +E PQ ++RVA+GL + K K E Y+ Sbjct: 149 VDYDRDYDFDYFGFKTMERLYLTKVGDKIVERPQHVYLRVAIGLWGSDIAKVK---ETYD 205 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 LS F ++PTLFNSG + QL+SCFL TV D L I+ AL + A L+K+ GGLG + Sbjct: 206 ALSCRKFTHASPTLFNSGFKKAQLASCFLMTVEDSLADIYKALGDCAQLSKHGGGLGINI 265 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +RG GA I+GTNG+S G++P LKV + T+ NQGG+RKG+ YLE H D+ +FL Sbjct: 266 SDIRGRGAMINGTNGESDGIVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDIMDFLL 325 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +++N G++ R ++ A W+ DLFMKRV +A W+LF P E L D +G E+ Y Sbjct: 326 MKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYTR 385 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 YE E K + A +W M+T + ETG P++ KD N ++ Q + G + SNL Sbjct: 386 YE-----AEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDTVNKKNMQSNAGTIRGSNL 440 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C EI +S EETAVC +GS+ L + N++FD+D L ++ + LD ID+ + I+ Sbjct: 441 CIEILEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIK 500 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A+ SN R IG+G+ G Q L +P+ SPEA ++ E E I + A+ ASVELA+ Sbjct: 501 EAETSNKRRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEI 560 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G + +F+GS +G+ + + S L W L++RVK G+RNS Sbjct: 561 HGPHPTFEGSPASKGILQYHMWDVTPK----------SNLDWRGLEERVKK-GVRNSLLT 609 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A+ PTA+ A ICG ++ +P NLY + ++G+F VVNS+LV EL +R W E M + + Sbjct: 610 ALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSENMKNQI 669 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 + GSI + I +K ++ TA+++ +I+ A+ R ++DQ QS+NL+L +P+ K Sbjct: 670 IANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLFLAQPTLKN 729 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATS 910 + + W GLK+ YYLRS+ A+S Sbjct: 730 VTSMLFYGWKSGLKSLQYYLRSKPASS 756 >gi|74229829|ref|YP_309033.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV] gi|72259743|gb|AAZ67514.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV] Length = 772 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/675 (37%), Positives = 389/675 (57%), Gaps = 34/675 (5%) Query: 285 LKYERDFAFEYLGLQILYDR-YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + Y+ D + Y GL + + Y + +N +E PQ MRVA+ + ++ E A+E Y Sbjct: 126 ISYDFDKQYTYFGLMTMIEGGYLMRVNNVTVERPQHMLMRVALQIHGEDIES---AIESY 182 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 L+ S F ++PTLF+SG + PQ+SSC+L + +D + GI+ L + AM++K+ GG+G Sbjct: 183 RLMRSKLFTHASPTLFSSGMKMPQMSSCYLLNIQEDSINGIYKTLNDCAMISKHGGGIGL 242 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R + I TNG + G+ P L+V N V+QGGKRKGA+ Y+E WH D+ F Sbjct: 243 NVSQIRAANSKIKSTNGTAAGLGPALRVFNSMLRHVDQGGKRKGALAVYIEPWHADIFTF 302 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL++N G + + D+ A W P LFMKRV+ W+L PDE L+D YG+EFE Y Sbjct: 303 LDLKRNMGAEDMKARDLFFAMWTPSLFMKRVSAGEKWSLMCPDECPGLNDCYGEEFERLY 362 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E+YE Q K +I A+ L RK++ + ETG P++ KD N ++ Q+++GV+ +S Sbjct: 363 ESYETQG-----KFKEQILALDLHRKIIEIQVETGGPYMLHKDNVNEKNNQKNLGVIRNS 417 Query: 583 NLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 NLC EI S ++ETAVCNL SI N A+ FD++ L R L+ +ID N Sbjct: 418 NLCAEIVQYSDNKETAVCNLASIAVNCFANKRTKNFDFESLYKVARVVTNNLNKIIDKNF 477 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + A+ SN HR IG+G+ G A +L++PY S +A E+ + E I + A+S S+E Sbjct: 478 YPLTSAQVSNFKHRPIGIGIQGLADAFAILNLPYDSQQARELNRKISETIYYGALSQSIE 537 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ GAY S+ GS G D + +++ D WDELK+++ G+RN Sbjct: 538 LAKLHGAYDSYNGSPASSGHLQFD-LWNISQSND--------LWNWDELKRQMAIHGLRN 588 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S +A PTAT A I G ++S +P NLYV+ +SG++ +VN LV++L +++ + Sbjct: 589 SLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQIVNQHLVDKLVDCNVYSTEL 648 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + ++GS+ NI+ IP D+K + TA+EI L+ A+ R +IDQ+QSLNL++ P Sbjct: 649 MMKIIKNNGSVQNIDDIPHDVKALFKTAWEIKQKVLLNMAADRGPYIDQSQSLNLFVANP 708 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 S K L I+ +W GLKT YYLR++ A + + T+ ++ P T P++ L Sbjct: 709 SYKILSSIHNYSWEKGLKTGMYYLRTKPAANTIQFTVP------SSSPFTKPSTDDAEL- 761 Query: 940 IPSSCTSDTECEVCQ 954 T CE CQ Sbjct: 762 -----TCYVGCESCQ 771 >gi|197322445|ref|YP_002154718.1| putative ribonucleotide reductase large subunit [Feldmannia species virus] gi|197130512|gb|ACH46848.1| putative ribonucleotide reductase large subunit [Feldmannia species virus] Length = 773 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 273/772 (35%), Positives = 421/772 (54%), Gaps = 51/772 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V + C GL V V + +Y G++ +L+ + + P+Y+ + AR Sbjct: 22 VRKLCEGLDSDFVDPVEVTMRVNQGIYAGVTTVELDLLAAETCAFMSTNHPDYSILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 L L +E + QK + + PE A L+ E + +AN Sbjct: 82 CLSNLYKETESCYKTLVQKMREY----VNPE-------TSQHAPLVSEELASV----VAN 126 Query: 284 DLKYERDFA------FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 + K ++ ++Y + L Y L ++G E P MRVA+G+ + Sbjct: 127 NSKVIQEALDEVLENYDYFAFKTLEKSYLLKMDGRVSERPHQLLMRVAIGIHGHDMPNVL 186 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKY 396 RA + + + +TPTLFN+GT PQ+SSCFL T D + GIF +L++ A ++KY Sbjct: 187 RA---FRDMRDKRYTMATPTLFNAGTPVPQMSSCFLMTNKADSISGIFDSLKDCATISKY 243 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 +GG+G VR G++I GTNG S G++P L+V N+ A V+QGG +RKG+ YLE W Sbjct: 244 AGGIGISVHDVRARGSYIRGTNGTSNGLVPMLRVFNNAARYVDQGGGRRKGSFAVYLEPW 303 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DV+ F+DLRKN G+D R D+ A W+PDLFMKRV +N+ W+LF P+E L D+ G Sbjct: 304 HADVQAFIDLRKNHGNDLERARDLFYALWVPDLFMKRVEKNSAWSLFCPNECPGLSDVCG 363 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 FE Y YE Q K + + A LW +++ + ETG P+I FKD N +S QQH Sbjct: 364 SRFEDLYARYESQG-----KARKVMDARKLWDQIVDVQVETGTPYILFKDSVNAKSNQQH 418 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLL-----AHFANNQFDYDKLASTIRTAVR 630 +GV+ SSNLCTEI +S +E AVCNLGSINL A+ + FD ++L + V Sbjct: 419 LGVIKSSNLCTEIVEYTSPDEIAVCNLGSINLSTFVRDAYTSTASFDLEELVNFAGRMVL 478 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L+ VID N + + +A+ SN HR IG+G+ GF AL ++ +PY S +A + E I Sbjct: 479 NLNRVIDKNFYPVPEAENSNLKHRPIGIGVQGFADALVMMRLPYDSVDAAGLNLNIFESI 538 Query: 691 SFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A+ SV LA+ + G + SF+GS +QG+F D G+ + W+ L Sbjct: 539 YYGAMKQSVHLARSDGGPHESFRGSPLEQGIFQFDLWGV----------KPSGLYDWEAL 588 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V G++N+ +A PTA+ A I G ++S +P N+Y + ++G+F V+N L+ + Sbjct: 589 RADVIKHGVKNALLVAPMPTASTAQILGNNESFEPFTSNVYNRRVLAGEFPVINKHLLRD 648 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L +W + + + L +GS+ NI +IP+D+K ++ T +EI +++ A+ R +I Q Sbjct: 649 LTSLGVWGDKVKNQLLRANGSVQNIPQIPEDIKALYKTVWEIPQRVILDHAAARGPFICQ 708 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR-SATSVEKSTLKGV 919 +QS+N+++ EPS K+ + W GLKT YYLR+R A S++ + K V Sbjct: 709 SQSMNIHMAEPSRGKITSMLFYGWRKGLKTGMYYLRTRPKADSIQFALEKSV 760 >gi|66810005|ref|XP_638726.1| ribonucleotide reductase large subunit [Dictyostelium discoideum AX4] gi|74854399|sp|Q54Q71|RIR1_DICDI RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|60467345|gb|EAL65376.1| ribonucleotide reductase large subunit [Dictyostelium discoideum AX4] Length = 870 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 277/797 (34%), Positives = 422/797 (52%), Gaps = 49/797 (6%) Query: 144 KLKIMMDDGTL--ISFN--SKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDL 198 K+ ++ DGT +SF+ + R+ + E D+ I V + ++ G+ ++L Sbjct: 15 KMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTEL 74 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKATHHEMQCLYPEY 255 + ++ + + P+Y + AR + L ++ KK + + + L P Sbjct: 75 DNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLV 134 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 E +K ES++D Y RDF +++ G + L Y ING +E Sbjct: 135 SKELYEIVMKHGERLESVID-----------YYRDFDYDFFGFKTLERSYLHRINGKIVE 183 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 PQ MRV++G+ ++ E A+ Y LS F +TPTLFN+GT PQ+SSCFL Sbjct: 184 RPQHMLMRVSIGIHGEDLES---AINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQ 240 Query: 376 VPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + +D + GI+ L++ A+++K +GG+G +R ++I GTNG S G++P L+V NDT Sbjct: 241 MKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDT 300 Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 A V+QGG KRKGA YLE WH DV EF+DL+KNTG + R D+ A W+ D+FM+RV Sbjct: 301 ARYVDQGGGKRKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERV 360 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 QN W LF P+E L + + +E Y YE D R I A LW ++ Sbjct: 361 EQNGDWALFCPNEAPGLAETHSEEHRALYLKYEATPDLPR----RVIKAQELWFAIMESQ 416 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611 ETG P+I +KD CN +S Q+++G + SSNLCTEI +S +E AVCNL SI L Sbjct: 417 VETGTPFILYKDACNAKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQ 476 Query: 612 -------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +FD+ L + L+ +ID N + + +AK SN HR IG+G+ G Sbjct: 477 KVGSTDPKEKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLA 536 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + +P+ S A ++ E E I F A++AS ELA G Y SFKGS +G+ D Sbjct: 537 DVFIKMRMPFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFD 596 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +SR W ELK V G+RNS +A PTA+ + I G ++ + Sbjct: 597 MWNVTP----------SSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFE 646 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P N+Y + ++G+FT+VN L+ +L + +W M + + GSI +I IPDDLK+ Sbjct: 647 PYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKE 706 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902 ++ T +EI LI+ A+ R +IDQ+QS N+++ EP+ KL ++ +W GLKT YY Sbjct: 707 LYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYY 766 Query: 903 LRSRSATSVEKSTLKGV 919 LR+R A + T+ + Sbjct: 767 LRTRPAADAIQFTVDPI 783 >gi|157953938|ref|YP_001498829.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella virus AR158] gi|156068586|gb|ABU44293.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella virus AR158] Length = 767 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 271/753 (35%), Positives = 420/753 (55%), Gaps = 48/753 (6%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228 A +GL SKIV S ++ DG+S L+ S ++ + P+Y + AR + L Sbjct: 49 AMTGLSVDVSKIVAS-VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNL 107 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND---- 284 QK TH ++ Y E A LL + + ++ A++ Sbjct: 108 ------------QKQTHDKITDAYAEI----------AHLLSDDFKE-NIEKHADEYQSF 144 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y+RD+ F+Y G + + Y +N +E PQ ++RVA+GL + + K E Y+ Sbjct: 145 IDYDRDYDFDYFGFKTMERLYLTKVNNKIVERPQHVYLRVAIGLWGSDIARVK---ETYD 201 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 LS F ++PTLFN+G + QL+SCFL TV D L I+ L + A L+K+ GGLG + Sbjct: 202 ALSCRKFTHASPTLFNAGFKKAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINI 261 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +RG G+ I+GTNG+S G++P LKV + T+ NQGG+RKG+ YLE H DV +FL Sbjct: 262 SEIRGRGSRINGTNGESDGIVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDVMDFLL 321 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +++N G++ R ++ A W+ DLFMKRV +A W+LF P E L D +G E+ YE Sbjct: 322 MKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYER 381 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 YE E K + A +W M+T + ETG P+++ KD N ++ Q + G + SNL Sbjct: 382 YE-----AEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNL 436 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C EI +S EETAVC +GS+ L + N++FD+D L ++ + LD ID+ + I+ Sbjct: 437 CNEIVEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIK 496 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A+ SN R IG+G+ G Q L +P+ S EA ++ E E I + A+ AS+ELA+ Sbjct: 497 EAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEI 556 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y +F+GS +G+ L +V + S L W L++RVK G+RNS Sbjct: 557 HGPYPTFEGSPASKGILQYH----LWDVTPK------SNLDWRGLEERVKK-GVRNSLVT 605 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A+ PTA+ A ICG ++ +P NLY + ++G+F VVNS+LV EL +R W E+M + + Sbjct: 606 ALMPTASTAQICGSIEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSESMKNQI 665 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 + GSI + I +K ++ TA+++ +I+ A+ R ++DQ QS+NL+L +P+ K Sbjct: 666 IANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGPFVDQTQSMNLFLAQPTLKN 725 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + + W GLKT YYLRS+ ++S T+ Sbjct: 726 VTSMLFYGWKSGLKTLQYYLRSKPSSSAIAVTI 758 >gi|330805291|ref|XP_003290618.1| ribonucleotide reductase large subunit [Dictyostelium purpureum] gi|325079257|gb|EGC32866.1| ribonucleotide reductase large subunit [Dictyostelium purpureum] Length = 855 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/765 (34%), Positives = 415/765 (54%), Gaps = 51/765 (6%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 V + ++ G+ ++L+ ++ + + P+Y + AR + L ++ T++ Sbjct: 57 VAQKVISGVFPGVKTTELDNLAAETAAYMSTRHPDYGVLAARISVSNLHKQTSTSL---- 112 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV-----YLANDLKYERDFAFEY 295 ++ + +Y + + A L+ + + +D+V L + Y+RDF +++ Sbjct: 113 -------VETVKIQYEYINSKTNLPAPLVSKEL--YDIVNEHAERLEKAIDYQRDFDYDF 163 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + L Y IN S +E PQ MRV++G+ + + A+ Y LS F +T Sbjct: 164 FGFKTLERSYLHRINNSIVERPQHMLMRVSIGIHGNDIDN---AILTYEKLSQKLFTHAT 220 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFN+GT +PQ+SSCFL + +D + GI+ L++ A+++K +GG+G +R ++I Sbjct: 221 PTLFNAGTPYPQMSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIACHKIRAAQSYI 280 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EF++L+KN G + Sbjct: 281 RGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFIELKKNHGKEE 340 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A W+ DLFM+RV QN W+LF P+E L + + +E Y YE Sbjct: 341 MRARDLFYALWVSDLFMERVEQNGDWSLFCPNEAPRLDETHSEEHRELYLKYENTPGLAR 400 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 R I A LW ++ ETG P+I +KD CN +S Q+++G + SSNLCTEI +S Sbjct: 401 ----RVIKAQELWFAIMESQVETGTPFILYKDSCNSKSNQKNLGTISSSNLCTEIIQYTS 456 Query: 594 SEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 +E AVCNL SI L +FD+ KL + + L+ +ID N + ++ Sbjct: 457 PDEIAVCNLASIALPKFIRRKEGSTNPKEKEFDHQKLYEITKIVTKNLNKIIDRNYYPVQ 516 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +AK SN HR IG+G+ G L +P+ A ++ E E I F A++AS EL+ Sbjct: 517 EAKTSNLRHRPIGIGIQGLADVFIQLRMPFDGTAAAKLNIEIAETIYFAALTASHELSLI 576 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK-KRVKTIGMRNSNC 763 G Y +FKGS QG+ D + T+R W +LK K V G+RNS Sbjct: 577 EGPYETFKGSPASQGILQYDFWNVTP----------TNRWNWTDLKDKIVNKGGLRNSLL 626 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +A PTA+ + I G ++ +P N+Y + ++G+FT+VN L+ +L + +W + + Sbjct: 627 IAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPELKNQ 686 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 + + GSI +I IPDDLK+++ T +EI LI+ A+ R +IDQ+QS N+++ EP+ Sbjct: 687 IVLNRGSIQSIPSIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFA 746 Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927 KL ++ +W GLKT YYLR+R A + T VD + P Sbjct: 747 KLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFT---VDPTVQQTP 788 >gi|22788802|ref|NP_690514.1| Rr1 [Heliothis zea virus 1] gi|22671562|gb|AAN04389.1|AF451898_94 Rr1 [Heliothis zea virus 1] Length = 939 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/740 (34%), Positives = 412/740 (55%), Gaps = 53/740 (7%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 ++++ K +YD +S +L+T L + ++ P+++ + AR ++ L +K+ Sbjct: 48 IVADVEKGLYDRVSTLELDTLLSETCASMSTAHPDHSILAARIAMQAL--------HKRT 99 Query: 241 QKATHHEMQCLY-----PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF-AFE 294 + ++ LY P+Y+ ++E H +D +V +RDF + Sbjct: 100 RSKFSETIRDLYEANIVPQYYFDLVQE-------HADTLDSAIVD-------DRDFQSLT 145 Query: 295 YLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 Y + L Y + + +I E Q +MR A+G+ ++ E +E YNLLS+ +++ Sbjct: 146 YFAYKTLERTYLIKLADGKICERVQHMYMRTALGIHGRDIES---VIETYNLLSNRYYVH 202 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 STPTL ++ T +SC+L + +D + G+ L++ A ++K+ GG+G +R + Sbjct: 203 STPTLCHAATNRSNYASCYLLELKEDSIGGVMDTLKDAATISKHCGGVGLHVHKLRCKNS 262 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 IH TNG + G++P L++ N + V QGG KR GA+ YLE WH DV +F+++RKN+G Sbjct: 263 TIHSTNGNASGLVPMLRMYNAMSRYVTQGGNKRPGAIAVYLEPWHADVFDFIEMRKNSGF 322 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + R D+ A W+PDLFMKRV W+L PD L D +G+EFE Y YE++ Sbjct: 323 EEARARDLFYALWVPDLFMKRVNDGGYWSLMCPDSSPGLSDCWGEEFEAKYTAYEQEG-- 380 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 + R++ A LW+ ++T ETG P+I +KD N S Q+H+G + SNLCTEI Sbjct: 381 ---RYVRRVDARELWKAIVTAQVETGTPYILYKDTVNRNSNQRHLGTIKGSNLCTEIVEY 437 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 +S +ETAVC L S+NL F+ + LA T+R R L+ +ID + I A KSN Sbjct: 438 ASPDETAVCVLASVNLPKFVEGKVFNLNLLAKTVRLVTRNLNKIIDNALYPIPSAAKSNF 497 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 HR IG+G+ G+ AL ++ I Y +++++ + E I A++ S +LA+ G Y S+ Sbjct: 498 KHRPIGIGVQGYADALAMMGIAYE--DSMQLNRDIFETIYHAALTESCQLARVHGVYESY 555 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS +G D + ++ D W L+K + G+RNS +A PTAT Sbjct: 556 HGSPTSRGELHFDRYSVHSQKCD-----------WSSLRKDIARYGLRNSLLVAPMPTAT 604 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + + G ++S +P N+Y + SG+F + N LV +L++ +LW++ M + Y++GSI Sbjct: 605 TSQVFGNAESFEPFTSNMYQRRTQSGEFQLTNVHLVRDLERLNLWNDDMAQLIMYNNGSI 664 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 NI IP++L++I+ T +EI LI+ A+ R +IDQ+QS NLY+ EP+ ++ I+ Sbjct: 665 QNITIIPEELRRIYKTVWEIPTKTLIDMAADRGAYIDQSQSFNLYVAEPTYSRMTSIHFY 724 Query: 892 AWLMGLKT-TYYLRSRSATS 910 AW GLKT YYLR++SAT+ Sbjct: 725 AWNKGLKTGMYYLRTKSATN 744 >gi|224001624|ref|XP_002290484.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335] gi|220973906|gb|EED92236.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335] Length = 811 Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/671 (37%), Positives = 385/671 (57%), Gaps = 41/671 (6%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343 +K+ERDF Y G + L Y L +N I E Q +MRVA+G+ + A E Y Sbjct: 128 IKHERDFEMTYFGYKTLERSYLLKLNEDTIVERIQYLWMRVALGIHCYANLQA--AFETY 185 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 +L+S +F ++PTLF++GT HPQLSSCFL + DD + GI+ L+ A+++K +GG+G Sbjct: 186 DLMSRGYFTHASPTLFHAGTTHPQLSSCFLVQMSDDSINGIYDTLKRCAVISKAAGGIGL 245 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461 +R G I GT G S G++P L+V + T+ V+QGG KR GA YLE WH D+ + Sbjct: 246 CVHKIRARGTFIKGTRGVSNGLVPMLRVFDVTSHYVDQGGGKRPGAFAIYLEPWHADIFD 305 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 L+L+KN G + +R ++ W+PDLFMKRV ++ W+L P L + +G++FE Sbjct: 306 VLNLKKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVWSLMCPHRCPGLSECHGEKFEEL 365 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y YE + R++ A LW +L ETG P++ +KD N +S QQ++G + Sbjct: 366 YAKYESDG-----RYTRQVRARELWAAILEAQIETGTPYLLYKDAANKKSNQQNLGTIQC 420 Query: 582 SNLCTEITLNSSSEETAVCNLGSINL-------LAHFANNQ-----FDYDKLASTIRTAV 629 SNLCTEI ++ EE AVCNL SI L +F + + FD+++L + Sbjct: 421 SNLCTEIIQYTNEEEVAVCNLASICLPKFVVSDRGNFGSTEGSGAYFDHEQLHKVAKIVT 480 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + LD VID+N + IE AKKSN +HR +G+G+ G L +P+AS EA + + E Sbjct: 481 KNLDKVIDVNQYPIEGAKKSNRSHRPVGIGVSGLADTFLRLGLPFASEEAKTLNEAIFET 540 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQG-----VFPIDSIGLLAEVRDE--LAMNRTS 742 I ++ AS E+A+E+G+Y +F GS +G ++ +D + + +D+ LA + S Sbjct: 541 IYHASLEASNEIAREKGSYETFAGSPASEGKLQFNLWGVDDVETPSHRKDQSALAFQKYS 600 Query: 743 R------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 W+ L++ + G+RNS +A PTA+ + I GV++ +P NLYV+ + Sbjct: 601 TQVNGGGYDWETLRQNIIEGGLRNSLLVAPMPTASTSQILGVNECFEPFASNLYVRRVKA 660 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN L+ +L LW++++ + L GS+ IE +PD LK ++ T +E+ + Sbjct: 661 GEFIIVNPHLIQDLTDLGLWNQSVRNQLMRDGGSVAKIECVPDRLKGLYKTVWEMKMKDV 720 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910 I+ A+ R K+IDQ+QSLNL++ +P+ KL ++ AW GLKT YYLR+R A + Sbjct: 721 IDMAADRGKFIDQSQSLNLFIADPTVDKLTAMHFYAWKKGLKTGIYYLRTRPAVNAIQYT 780 Query: 911 VEKSTLKGVDG 921 VEK L VD Sbjct: 781 VEKDALPEVDA 791 >gi|224097022|ref|XP_002189376.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain [Taeniopygia guttata] Length = 847 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/674 (38%), Positives = 380/674 (56%), Gaps = 48/674 (7%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF++ Y G + L Y L IN E PQ MRV++G+ + + A+ Sbjct: 144 LNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVSVGIHKADIDA---AI 200 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K +GG Sbjct: 201 ETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGG 260 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458 +G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH+D Sbjct: 261 IGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLD 320 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L D++G+EF Sbjct: 321 IFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDDVWGEEF 380 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE+YERQ +V R + A LW ++ ETG P++ +KD CN +S QQ++G Sbjct: 381 EKLYESYERQG-----RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGT 435 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVID 637 + SNLCTEI +S EE AVCNL SI L + + +D+ KLA + VR L+ +ID Sbjct: 436 IKCSNLCTEIVEYTSREEVAVCNLASIALNMYVTPEHSYDFKKLAEVTKVIVRNLNKIID 495 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV----------------- 680 IN + + + N G S L SPEA+ Sbjct: 496 INYYPV--PEDLNRAQFVRGAPHAELSSEETWLPQTPRSPEALPGFWGSGLTGLRVRCSY 553 Query: 681 EIADESMEFISFHAI-SASVELAQERGA-YSSFKGSL----WDQGVFPIDSIGLLAEV-- 732 E + + A +E E G Y +K S Q + I L E+ Sbjct: 554 ERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 613 Query: 733 ---RDELAM----NRTSRLPWD--ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 R+E+ N T WD LK+++ G+RNS ++ PTA+ A I G ++SI+ Sbjct: 614 YTSREEILQYDMWNVTPSDLWDWKALKEKIAKYGVRNSLLISPMPTASTAQILGNNESIE 673 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P N+Y + +SG+F VVN L+ +L +R LW+E M + + H+GSI NI IPDDLK+ Sbjct: 674 PYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNIPEIPDDLKQ 733 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902 ++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YY Sbjct: 734 LYKTVWEISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYY 793 Query: 903 LRSRSATSVEKSTL 916 LR++ A + + TL Sbjct: 794 LRTKPAANPIQFTL 807 >gi|291336892|gb|ADD96421.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 431 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/414 (48%), Positives = 282/414 (68%), Gaps = 6/414 (1%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 +G L N ++ + E AC L++VS ++ + + YD ++ +++ ALI S+R I Sbjct: 11 NGRLQELNIDKINLCAERACEDLENVSWSEIVLDAHVQFYDKITTKEIDKALIMSARQKI 70 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 EKEPNY+ +R LL + +EV K H++ F + I+ VK +L Sbjct: 71 EKEPNYSYAASRLLLATIHKEVFGESRDKDVFEEQHKLS------FIKNIKSLVKEEILD 124 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 E ++ FDL L+ L +RD F+YLGLQI+YDRY H+N R+E PQ+F+MRVAMGLAL Sbjct: 125 ERLLSFDLKMLSEALVTDRDLKFKYLGLQIIYDRYLHHVNERRLETPQSFWMRVAMGLAL 184 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 E +K ++A+EFYN LS+F CSTPTLFNSG+ H QLSSC+L T D + GIF L + Sbjct: 185 NEKDKNEKAIEFYNALSTFSLCCSTPTLFNSGSNHSQLSSCYLNTFDDSIDGIFEGLWQE 244 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A +KY+GGLG D T R +++ GTNGKS G+IP+LK+ NDT +AV+QGGKR GA C+ Sbjct: 245 ARKSKYAGGLGFDCTNFRASNSYVKGTNGKSSGLIPWLKIYNDTLIAVDQGGKRPGAGCS 304 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH+D+E+FL+L+KNTGD+RRR HDMNTANWIPDLF+++V +N W LFSP + +L Sbjct: 305 YLEPWHLDIEDFLELKKNTGDERRRCHDMNTANWIPDLFIRKVQKNEDWYLFSPSDTREL 364 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 H+ YG EF+ Y+ Y + AD G+++ ++ + A LW+KML +LFETGHPW+T K Sbjct: 365 HETYGNEFDKIYKKYCKLADSGDLENYKIVKAKDLWKKMLRVLFETGHPWMTLK 418 >gi|118197505|ref|YP_874319.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV] gi|37039662|gb|AAQ88175.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV] Length = 760 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 239/637 (37%), Positives = 371/637 (58%), Gaps = 20/637 (3%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFY 343 L Y D+ ++Y G + L + Y I G E Q +MRVA+ + +T+ V E Y Sbjct: 127 LNYNLDYDYKYFGFKTLENGYLKTIEGKVAERIQHMYMRVALTIHGNDTDDCIENVFETY 186 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402 NL++ + ++PTLF SG+ + QL+SCFL + +D + GI+ L++ A+++K+ GG+G Sbjct: 187 NLMAHKMYTHASPTLFASGSCYAQLASCFLLNIKEDSIVGIYETLRDCALISKFGGGIGL 246 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 VR G+ I TNG + G+ L+V N+ V+QGGKRKGA+ Y+E WH D+ +F Sbjct: 247 SVHNVRARGSFIESTNGTANGLEAMLRVYNNAVRHVDQGGKRKGAMAIYVEPWHADIYDF 306 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 L+L++N G + R+ D+ A W+PDLFMKRV + W+L P E L ++G EFE Y Sbjct: 307 LELKRNMGAEDRKARDLLYALWVPDLFMKRVEADGMWSLMCPRESPLLDTVHGSEFEQLY 366 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE+ K R+I A L+R ++ ETG P++ +KD CN++S Q+H+G + +S Sbjct: 367 VAYEKCG-----KFVRQIKARDLFRTIVETQVETGTPYMMYKDACNMKSNQKHLGTIKNS 421 Query: 583 NLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 NLC EI S E+AVCNL SI N +++++ L + V+ L+ +IDIN Sbjct: 422 NLCAEIVEYSDKNESAVCNLASICVNQFVDIDVGEYNFEMLKYVTKIVVKNLNKIIDINY 481 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + A+KSN HR IG+G+ G +L +PY S +A + + E I F A+ AS E Sbjct: 482 YPLLSAQKSNRKHRPIGVGIQGLADTFAMLRMPYESDQAKVLNTKIAETIYFGALEASCE 541 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ G + S+ S P S+G+L D TS W +LKK +K G+RN Sbjct: 542 LAKAYGVHDSYFSS-------PA-SLGILQ--YDLWNHTPTSMWDWTQLKKDIKQHGLRN 591 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S C+A PTAT A I G ++S +P N+YV+ ++GDF V+N +L ++L + +L++E M Sbjct: 592 SLCVAYMPTATTAQILGNNESFEPFTNNIYVRRVLAGDFQVINKYLTDDLIKLNLYNEQM 651 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + ++GS+ NIE IP +++++ T +E+ LI A+ R +IDQ+QS N++L +P Sbjct: 652 RNKIIANNGSVQNIEEIPKHVRELYKTVWEMKVKNLIGMAADRGPFIDQSQSFNIFLSQP 711 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + L I+ W GLKT YYLR++ A K T+ Sbjct: 712 TYALLTTIHMHTWKSGLKTGMYYLRTKPAADAIKFTV 748 >gi|254567974|ref|XP_002491097.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|238030894|emb|CAY68817.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|328352376|emb|CCA38775.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris CBS 7435] Length = 774 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 270/811 (33%), Positives = 434/811 (53%), Gaps = 58/811 (7%) Query: 155 ISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE--TALIFSSRTLI 210 ISF+ RL+ + + GL + V +V+ + + + L DL T+ I +S L Sbjct: 8 ISFDEARLKRSLLKLSFGLNLKFVDIALVVEKVSLAIIENLHLQDLLNLTSEILAS--LS 65 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 + +Y+ + AR L LR+ + + + ++ H ++++G+ Sbjct: 66 TRHYDYSNLAARLLSNHLRKRLGDSFFANCERLAEHG-----------FVDKGLLTIARS 114 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 S L +K ERDF F+Y G L Y L + +E PQ FMRVA+G+ Sbjct: 115 NSEQ------LDGSIKPERDFDFDYFGYMTLQSIYLLKKDDLILETPQFLFMRVALGI-- 166 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQE 389 E A++ Y+L+S +F+ ++PTLF++GT P LSSCFL + D D+ ++ +L + Sbjct: 167 -HGEDLSSAIQTYDLMSQGYFIHASPTLFHAGTPTPYLSSCFLMGLQDADVNSVYQSLHK 225 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGA 447 AM++ +GG+G + H I + ++G++P +KV N+TA V QG KR A Sbjct: 226 IAMISNAAGGIG--------INVHDIPAEDACNRGIVPLIKVLNETARYVQQGSNKRPSA 277 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YLE WH +V + L+LRKN G + R D+ A WIPDLFM++V +N W LF+P Sbjct: 278 FAIYLEPWHEEVFDLLNLRKNHGKEEIRARDLFYALWIPDLFMEKVEKNEDWCLFNPLHA 337 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L+D+YG++F + Y YE++ RKI A LW ++ ETG P++ +KD C Sbjct: 338 KGLNDVYGEQFNLLYAEYEKKG-----MYVRKIPAQQLWNAIVDAQIETGTPFMLYKDSC 392 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N +S Q ++G + SNLC EI SS ++ AVCNL SI L + + +FD++ L +++R Sbjct: 393 NRKSNQSNLGTIQCSNLCCEIVEYSSRDQIAVCNLASIGLPKYVVDGKFDFESLKNSVRI 452 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 L+ VIDI+ + + +A SN R + +G+ G LL IPY S EA + + Sbjct: 453 VTENLNKVIDISKYPVPEASYSNDLTRPMAIGVQGLWDTFMLLKIPYDSEEAAALNSQIF 512 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I + A+ S+ +A++ G Y SF+GS +G+ +D L V++E L W Sbjct: 513 ETIYYSALETSMNIAKKDGPYKSFQGSPASKGLLQMD----LWNVKEE-----DLTLDWK 563 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ + G+RNS + PTA+ + I G +S +P N Y + SG++ VVN +L+ Sbjct: 564 SLRSDIVKHGLRNSLLVGPMPTASTSQILGFCESFEPLSYNFYTRRVSSGEYQVVNKYLI 623 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 ++L LW +++ ++ +DGSI I+ IP ++K ++ T +EI I A+ R ++I Sbjct: 624 DDLINLGLWTDSLRQEIIGNDGSIQEIDEIPQEVKSLYKTVWEISQRITINMAADRGRFI 683 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL----KGVDGK 922 DQ+QS+NLYL +P+ KL ++ AW GLKT YYLR+++A+S K ++ + DG Sbjct: 684 DQSQSMNLYLAKPNRGKLTAMHFYAWKKGLKTGMYYLRTKAASSAIKFSIDISKRKRDGT 743 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 N P + +L SC + CE C Sbjct: 744 YN-TPTKRQAVQSEALETTPSCQLNN-CESC 772 >gi|308798579|ref|XP_003074069.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS) [Ostreococcus tauri] gi|116000241|emb|CAL49921.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS) [Ostreococcus tauri] Length = 840 Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/775 (35%), Positives = 409/775 (52%), Gaps = 67/775 (8%) Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236 S IV + ++ G++ +L+ ++ ++ K P+YA + AR + L + TTV Sbjct: 52 SQVIVAQKVCMGVFAGVTTKELDELAAETAASMTSKHPDYALLAARISVSNLHK---TTV 108 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAF 293 K+ M+ +Y R G + LL + + + + L +L Y+RDF + Sbjct: 109 -----KSFSETMKVMYEHVNKR---NGKWSPLLADDVYEIIMANAEKLDAELVYDRDFDY 160 Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 +Y G + L Y L I+G +E PQ MRV++G+ + EK A++ Y++LS Sbjct: 161 DYFGFKTLERSYLLRIDGKVVERPQHLLMRVSIGIHKTDIEK---AIDTYHMLSERWMTH 217 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW-TPVRGLG 411 ++PTLFN+GT PQLSSCFL + +D + GI+ L+E A ++K +GG+ + P Sbjct: 218 ASPTLFNAGTPRPQLSSCFLICMKEDSIEGIYDTLKECACISKSAGGIALTFEAPTERRT 277 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A V ++A T V V+ R YLE WH D+ ++LDLRKN G Sbjct: 278 ASFRCC------VCSTTRLATWTKVVVSARNVR-----IYLEPWHADIFDWLDLRKNHGK 326 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + R D+ W DLFMKRV N WTL P+E L D +G+EFE YE YE Sbjct: 327 EEARARDLFYGLWTNDLFMKRVEANGEWTLMCPNECPGLSDCWGEEFETLYEKYE----- 381 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 E K + I A LW +L ETG+P++ FKD CN +S QQ++G + SSNLCTEI Sbjct: 382 AEGKGKKTIKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEY 441 Query: 592 SSSEETAVCNLGSINLLAHFANNQ-----------------------FDYDKLASTIRTA 628 +S +ETAVCNL SI L N FD+ KL R Sbjct: 442 TSPDETAVCNLASIALPRFVIENNPSSPTGRTETKKLVGSLKSKERFFDHSKLFEITRKV 501 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L+ +ID+N + +E AK SN HR IGLG+ G LL +P+ SPEA ++ E E Sbjct: 502 TRNLNRIIDVNYYPVEAAKNSNMRHRPIGLGVQGLADVFILLGLPFDSPEAQKLNAEIFE 561 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I F A++ S LA G YS+++GS +GV D GL M +R W Sbjct: 562 TIYFAALTESNALAVAEGPYSTYEGSPVSKGVLQPDMWGL-------TEMPGGNRHDWAG 614 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+ + G+RNS +A PTA+ + I G ++ +P N+Y + +SG+FTVVN L++ Sbjct: 615 LRASIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLS 674 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L + LWD + ++L ++GS+ +++ IPD+LK I+ T +EI L++ A+ R +ID Sbjct: 675 DLTELGLWDPELKNELISNNGSVQDLD-IPDNLKNIYKTVWEIKQRVLVDMAADRGAFID 733 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922 Q+QS N+++ +P+ KL ++ AW GLKT YYLRSR+A K T+ K Sbjct: 734 QSQSFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTVDATKTK 788 >gi|269860694|ref|XP_002650066.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] gi|220066497|gb|EED43976.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] Length = 778 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 247/710 (34%), Positives = 393/710 (55%), Gaps = 43/710 (6%) Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T+I P+Y K+ A L++ L T K YI++ + Sbjct: 56 TMITIHPSYNKLAAIILIKHLHENTFNTFSDKMM-----------------YIQQ--EKN 96 Query: 268 LLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + + +M+ ++ + +KYERD+ F+Y L L Y + +N + IE PQ +MRV Sbjct: 97 IFDDHIMELIINNMNVYNSIVKYERDYNFDYFALISLQKSYQIQVNNTVIERPQDIYMRV 156 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383 A+ L + ++ Y+LLS ++ +TPTL+NS + QL+SCFL + D + GI Sbjct: 157 AIELHGDDFNNVQKT---YDLLSQQYYTHATPTLYNSCFKKNQLASCFLLGMKSDTIAGI 213 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 F ++E A+ +K SGG+G + +R + + T G S+G+IP +K+ ND+ +NQGG Sbjct: 214 FDTIKEAAIYSKLSGGVGLHISNLRCDKSQLVTTGGYSKGIIPIVKLINDSMKYINQGGA 273 Query: 444 RKGAVCA-YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+ A CA YLE WH D+ +FLDLRKNTG + R D TA WI DLFM+RV +N W+LF Sbjct: 274 RRCATCAFYLEPWHKDILKFLDLRKNTGIEEERARDSFTALWINDLFMERVEKNEMWSLF 333 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P+ L D++G +F Y YE +R I A LW++++ ETG P++ Sbjct: 334 DPNIAKGLQDVWGDQFNKLYAYYEETIER------TTIPAQKLWKEIICSQIETGTPYMC 387 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQF 616 +KD CN S Q ++G + SSNLC EI S S+ TAVCNL SI L + +N F Sbjct: 388 YKDTCNRYSNQNNIGTIKSSNLCAEIIQYSDSDITAVCNLASICLPKYVKINSTTSNYYF 447 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ +L + ++ ++ +ID + E++KK N R IG+G+ G L+ + S Sbjct: 448 DFQELYTVVKIVTYNMNKMIDKSAFPTEESKKGNSLFRPIGIGVQGLADVFFLMGYSFES 507 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ E + F A+ AS ELAQ+ G YS ++GS++ QG+F + E R + Sbjct: 508 KEARDLNKMIFETLYFGALEASCELAQKHGPYSYYQGSMYSQGIFHFEK---FCEGRINV 564 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + W+EL+ ++KT G+RNS +A+ PTA+ + ICG S+ I+P N++ + + Sbjct: 565 NEILSGMWNWEELRIKMKTYGVRNSLTLALMPTASTSQICGNSECIEPIQSNIFTRRTFA 624 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L + LW+ + + ++GSI I IP +K ++ T +E+ + Sbjct: 625 GEFQIVNKYLMKDLIKLGLWNNEIKQLIIEYEGSIQKIPIIPQHVKDLYKTVWELKMKSV 684 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 ++ A RQ ++DQ+QSLNL++ EP+ L ++ W LKT YYLR+ Sbjct: 685 LDMAIDRQAFVDQSQSLNLFVKEPTYGILSSMHFYGWKNKLKTGMYYLRT 734 >gi|155122463|gb|ABT14331.1| hypothetical protein MT325_M777L [Paramecium bursaria chlorella virus MT325] Length = 765 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 238/609 (39%), Positives = 350/609 (57%), Gaps = 21/609 (3%) Query: 304 RYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 R +L GS+I E PQ ++RVA+ L + E+ K E Y+ LS F ++PTLFN+G Sbjct: 162 RLYLTKVGSKIIERPQHTYLRVAIALWGSDIERVK---ETYDALSRRKFTHASPTLFNAG 218 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 + L+SCFL D L IF L + A L+KY GG+G + +RG GA I GTNG+S Sbjct: 219 FKKANLASCFLVHCNDSLTDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESD 278 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G++P LKV + T+ NQGG+RKG+ YLE H D+ +FL LR+N G++ R ++ A Sbjct: 279 GIVPMLKVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYA 338 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 W+ DLFMKRV +A W+L P E L D+YGKE+E Y YE E K R + A Sbjct: 339 MWVNDLFMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYE-----SEGKAKRVVKA 393 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 +W M+T ETG P++ KD N ++ Q + G + SNLC EI +S EETAVC + Sbjct: 394 RDVWNTMVTTQMETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVI 453 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSI L + N+ FD++ L ++ + LD ID+ + + +A+ SN R +G+G+ G Sbjct: 454 GSIVLKNYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQG 513 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 Q L +P+ S +A ++ E E I F A+ AS EL+ E G + +F+GS +G+ Sbjct: 514 LQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQ 573 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 G+ + + L W L+ RVK G+RNS A+ PTA+ A ICG ++ Sbjct: 574 YHLWGVTPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAA 622 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y + ++G+F VVNS+LV EL R W EAM + + + GSI + I D+K Sbjct: 623 EPITSNIYSRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVK 682 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 ++ T++EI +I+ A+ R ++DQ QS+NL+L P+ K + + AW GLKT Y Sbjct: 683 AVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVY 742 Query: 902 YLRSRSATS 910 Y RS+ A + Sbjct: 743 YTRSKPAAN 751 >gi|155370864|ref|YP_001426398.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella virus FR483] gi|155124184|gb|ABT16051.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella virus FR483] Length = 765 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 236/609 (38%), Positives = 350/609 (57%), Gaps = 21/609 (3%) Query: 304 RYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 R +L GS+I E PQ ++RVA+ L + E+ K E Y+ LS F ++PTLFN+G Sbjct: 162 RLYLTKVGSKIIERPQHTYLRVAIALWGSDIERVK---ETYDALSRRKFTHASPTLFNAG 218 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 + L+SCFL D L IF L + A L+KY GG+G + +RG GA I GTNG+S Sbjct: 219 FKKANLASCFLVHCNDSLSDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESD 278 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G++P LKV + T+ NQGG+RKG+ YLE H D+ +FL LR+N G++ R ++ A Sbjct: 279 GIVPMLKVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYA 338 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 W+ DLFMKRV +A W+L P E L D+YGKE+E Y YE + K R + A Sbjct: 339 MWVNDLFMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYESEG-----KAKRVVKA 393 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 +W M+T ETG P++ KD N ++ Q + G + SNLC EI +S EETAVC + Sbjct: 394 RDVWNTMVTTQIETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVI 453 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSI L + N+ FD++ L ++ + LD ID+ + + +A+ SN R +G+G+ G Sbjct: 454 GSIVLKNYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQG 513 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 Q L +P+ S +A ++ E E I F A+ AS EL+ E G + +F+GS +G+ Sbjct: 514 LQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQ 573 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 G+ + + L W L+ RVK G+RNS A+ PTA+ A ICG ++ Sbjct: 574 YHLWGVTPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAA 622 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y + ++G+F VVNS+LV EL R W E M + + + GSI + I D+K Sbjct: 623 EPITSNIYSRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVK 682 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 ++ T++EI +I+ A+ R ++DQ QS+NL+L P+ K + + AW GLKT Y Sbjct: 683 AVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVY 742 Query: 902 YLRSRSATS 910 Y+RS+ A + Sbjct: 743 YVRSKPAAN 751 >gi|145527768|ref|XP_001449684.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124417272|emb|CAK82287.1| unnamed protein product [Paramecium tetraurelia] Length = 621 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 228/575 (39%), Positives = 352/575 (61%), Gaps = 20/575 (3%) Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404 +S +F +TPTLFNSGT +PQ+SSCFL + DD + GI+ L+ A+++K +GG+G Sbjct: 1 MSQKYFTHATPTLFNSGTPYPQMSSCFLLDMVDDSIEGIYETLKRCALISKSAGGIGLSV 60 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463 + +R ++I GTNG S G++P LKV NDTA V+QGG KRKG+ YLE WH D+ FL Sbjct: 61 SKIRSQDSYIRGTNGISNGLVPMLKVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIISFL 120 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRKN G + +R D+ WIPDLFM+RV ++ WTL P+E L D YG+EF Y Sbjct: 121 QLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYT 180 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +YE + + G + + A LW++++ TG P++ +KD CN +S Q+++G + SSN Sbjct: 181 DYESK-NMGRVT----MKARQLWQEIIDAQISTGLPYMLYKDACNSKSNQKNLGTIKSSN 235 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHT 642 LCTEI +S +E AVCNL SINL ++ F++DKL + L+ VID+N + Sbjct: 236 LCTEIIQYTSPDEVAVCNLASINLQKLIKEDKTFNFDKLLEITKIITTNLNIVIDLNFYP 295 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +++A+ SN +R IG+G+ GF AL + IP+ S +A+E+ + E I + A S+ELA Sbjct: 296 VQQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKIFETIYYGACERSLELA 355 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 Q+ G Y +F GS QG+ D G+ ++ D W+ LK+ + GMRNS Sbjct: 356 QQLGPYETFAGSPASQGILQFDMWGVSPKLYD-----------WNTLKQNIVKYGMRNSL 404 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A PTA+ + I ++S +P N+Y + ++G+F +N LV++L + +LW + + Sbjct: 405 LIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGEFVCINPHLVDDLIELNLWTPQIKN 464 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 L ++GS+ NI+ IP ++K+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ Sbjct: 465 KLIMNNGSVQNIDEIPTNIKQLYKTVWEISQKAILNLATSRAPFIDQSQSLNIHMAEPTM 524 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 K+ ++ AW GLKT YYLR+R A K T+ Sbjct: 525 SKVTSMHFYAWEKGLKTGMYYLRTRPAADPIKFTV 559 >gi|14581686|gb|AAK69359.1|AF132669_1 ribonucleotide reductase large subunit RR1 [shrimp white spot syndrome virus] Length = 848 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/752 (34%), Positives = 408/752 (54%), Gaps = 43/752 (5%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +S +++ L ++T I P++ K+ RF+ + + T + T ++ Sbjct: 65 ISFQEMDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKN--TKEWNSFSATTQKLRHAIH 122 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHI 309 P G A +++++ + + L + Y+ D+ F GL+ L Y + I Sbjct: 123 PG-------TGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKI 175 Query: 310 NGSR-------IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 +E PQ MRVA+G+ + K +E Y+L+S +F ++PTLFN G Sbjct: 176 GSPTDRKKRILVERPQDMIMRVAVGIHGSDI---KSVIETYDLMSRHYFTHASPTLFNCG 232 Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T PQLSSCFL + DD + GI+ L+E A+++K +GGLG + +R G+ I +G Sbjct: 233 TVTPQLSSCFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTH 292 Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 G++ FL++ N + V+QGG KR+GA Y+ WH+DV++F+D RKN G++ RT D+ Sbjct: 293 PGLMAFLQIFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLL 352 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 A W+ DLFM+RV W+L P E L D++G+EF+ YE YE + E+ + Sbjct: 353 PAIWVSDLFMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEAEGKGKEV-----V 407 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A AL+ ++ + ETG P++ FKD N +S Q++VG++ SSNLCTEI S SEETAVC Sbjct: 408 KARALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVC 467 Query: 601 NLGSI---NLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 NL SI + +F DY ++ ++ R LD VID+N + ++K + SN Sbjct: 468 NLASIAVNKFVKYFPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKT 527 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK 712 R +GLG+ G L IP+ S EA I E I + A+ AS E+A+E+G Y F+ Sbjct: 528 RPMGLGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFE 587 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS +G+F D + RD + N W++L++ + G+ NS +A PTA+ Sbjct: 588 GSPLSKGIFQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAPMPTAST 646 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A I G S+S +P N+Y ++ +SG F VVN +++ EL + W+ + GSI Sbjct: 647 AQILGNSESFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQ 706 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 + IP K++ T +EI+P ++ A +R ++DQAQSLNL+++EP K+ + A Sbjct: 707 TLPNIPKSTKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYA 766 Query: 893 WLMGLKTTYYLRSRSAT-----SVEKSTLKGV 919 W G+KT YYLR++ A +V+K+ L+ V Sbjct: 767 WEKGIKTLYYLRTKGAARAVQFTVDKNVLQEV 798 >gi|17158276|ref|NP_477694.1| wsv172 [Shrimp white spot syndrome virus] gi|6165659|gb|AAF04636.1|AF099142_4 large subunit of ribonucleotide reductase [shrimp white spot syndrome virus] gi|15021484|gb|AAK77761.1|AF369029_92 ORF92, putative ribonucleotide reductase large subunit (RR1) [shrimp white spot syndrome virus] gi|17016570|gb|AAL33176.1| wsv172 [shrimp white spot syndrome virus] gi|19481820|gb|AAL89096.1| WSSV228 [shrimp white spot syndrome virus] Length = 848 Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/758 (34%), Positives = 409/758 (53%), Gaps = 55/758 (7%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +S +++ L ++T I P++ K+ RF+ + + T + T ++ Sbjct: 65 ISFQEMDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKN--TKEWNSFSATTQKLRHAIH 122 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHI 309 P G A +++++ + + L + Y+ D+ F GL+ L Y + I Sbjct: 123 PG-------TGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKI 175 Query: 310 NGSR-------IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 +E PQ MRVA+G+ + K +E Y+L+S +F ++PTLFN G Sbjct: 176 GSPTDRKKRILVERPQDMIMRVAVGIHGSDI---KSVIETYDLMSRHYFTHASPTLFNCG 232 Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T PQLSSCFL + DD + GI+ L+E A+++K +GGLG + +R G+ I +G Sbjct: 233 TVTPQLSSCFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTH 292 Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 G++ FL++ N + V+QGG KR+GA Y+ WH+DV++F+D RKN G++ RT D+ Sbjct: 293 PGLMAFLQIFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLF 352 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 A W+ DLFM+RV W+L P E L D++G+EF+ YE YE + E+ + Sbjct: 353 PAIWVSDLFMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEAEGKGKEV-----V 407 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A AL+ ++ + ETG P++ FKD N +S Q++VG++ SSNLCTEI S SEETAVC Sbjct: 408 KARALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVC 467 Query: 601 NLGSINLLAHFANNQF-------------DYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 NL SI A N+F DY ++ ++ R LD VID+N + ++K + Sbjct: 468 NLASI------AVNKFVKYSPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTR 521 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG- 706 SN R +GLG+ G L IP+ S EA I E I + A+ AS E+A+E+G Sbjct: 522 ISNMKTRPMGLGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGE 581 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 Y F+GS +G+F D + RD + N W++L++ + G+ NS +A Sbjct: 582 TYELFEGSPLSKGIFQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAP 640 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTA+ A I G S+S +P N+Y ++ +SG F VVN +++ EL + W+ + Sbjct: 641 MPTASTAQILGNSESFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMA 700 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 GSI + IP K++ T +EI+P ++ A +R ++DQAQSLNL+++EP K+ Sbjct: 701 SGGSIQTLPNIPKSTKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVR 760 Query: 887 FIYRQAWLMGLKTTYYLRSRSAT-----SVEKSTLKGV 919 + AW G+KT YYLR++ A +V+K+ L+ V Sbjct: 761 SMTMYAWEKGIKTLYYLRTKGAARAVQFTVDKNVLQEV 798 >gi|320038060|gb|EFW19996.1| ribonucleoside-diphosphate reductase large subunit [Coccidioides posadasii str. Silveira] Length = 643 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 246/673 (36%), Positives = 373/673 (55%), Gaps = 40/673 (5%) Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 + V + + + +Y G++ +L+ ++ + P+YA + AR + L Sbjct: 2 EHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARIAVSNL----- 56 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY-----LANDLKYE 288 +K+ +K + LY YI S +++V L + + Y+ Sbjct: 57 ---HKQTKKQFSSVIDDLY-----HYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYD 108 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RDF ++Y G + L Y L ING E PQ MRVA+G+ ++ EK A+E YNL+S Sbjct: 109 RDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK---AIETYNLMSQ 165 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A+++K +GG+G + + Sbjct: 166 KFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGGIGLNVHRI 225 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R G++I GTNG S G+IP L+V N+TA V+QGG KR GA YLE WH D+ EFLDLR Sbjct: 226 RATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHSDIFEFLDLR 285 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KN G + R D+ A W PDLFMKRV +N WTLF P+E L D+YG EFE YE YE Sbjct: 286 KNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGDEFEALYEQYE 345 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++ RG + I A LW +L ETG+P++ +KD CN +S Q+++G + SSNLCT Sbjct: 346 KEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTIRSSNLCT 400 Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI +S +E AVCNL S+ L + ++D+ KL + VR L+ +ID N + + Sbjct: 401 EIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNKIIDGNHYPVP 460 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A+KSN HR I +G+ G A L +P+ SPEA ++ + E I A++AS ++A+ Sbjct: 461 EARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKV 520 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y +++GS QGV D + T WD LK+ + G+RNS + Sbjct: 521 DGPYETYEGSPVSQGVLQYDMWNVTP----------TDLWDWDSLKRDIAKHGVRNSLLV 570 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ + I G ++ +P N+Y + ++G+F VVN +L+ +L LW + M + + Sbjct: 571 APMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRI 630 Query: 825 KYHDGSIGNIERI 837 GSI +I I Sbjct: 631 IAEGGSIQSIPNI 643 >gi|171399|gb|AAA34569.1| ribonucleotide reductase DNA damage-inducible regulatory subunit [Saccharomyces cerevisiae] Length = 756 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/742 (34%), Positives = 401/742 (54%), Gaps = 48/742 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+ + + P+YA + AR + L ++ T + K + H + Sbjct: 47 VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 105 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 G A ++ + + + + YL + + Y+RDF + Y G + L Y Sbjct: 106 NP----------ATGKHAPMISDEIYNIVMETRYLNSAIVYDRDFQYTYFGFKTLERSYL 155 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 L +NG E PQ MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT P Sbjct: 156 LRLNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPLP 212 Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 Q+SSCFL + DD + GI+ L+E AM++K +G L + +R G++I GTNG S G+I Sbjct: 213 QMSSCFLIAMKDDSIEGIYDTLKECAMISKTAGVLSHI-NNIRSTGSYIAGTNGTSNGLI 271 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETW----HIDVEEFLDLRKNTGDDRRRTHDMNT 481 P ++V N+TA V + R + + +W I +F D+RK G + R D+ Sbjct: 272 PMIRVFNNTARYVTRVVTRDLVLSPF--SWSHGMQISSTKF-DIRKTHGKEEIRARDLFP 328 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A WIPDLFMKRV ++ WTLFSP L D++G EFE Y YER+ RG + I Sbjct: 329 ALWIPDLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIK 382 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LW +L ETG P++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCN Sbjct: 383 AQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCN 442 Query: 602 LGSINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 L SI L A ++ +++++L + L+ VID N + + +A+ SN HR Sbjct: 443 LASIALPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRP 502 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 I LG+ G +L +P+ S EA + + E I + AS ELAQ+ G YS+F+GS Sbjct: 503 IALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSP 562 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 +G+ D M W+ L+K + G+RNS MA PTA+ + I Sbjct: 563 ASKGILQFDMWNA-----KPFGM-----WDWETLRKDIVKHGLRNSLTMAPMPTASTSQI 612 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G ++ +P N+Y + +SG+F VVN +L+ +L +WD++M L +GSI + Sbjct: 613 LGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLP 672 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 +P +LK+++ T +EI +I A+ R +IDQ+ SLNL+L PS K+ ++ W Sbjct: 673 NVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKK 732 Query: 896 GLKT-TYYLRSRSATSVEKSTL 916 GLKT YYLR+++A++ + T+ Sbjct: 733 GLKTGMYYLRTQAASAAIQFTI 754 >gi|300707604|ref|XP_002996003.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01] gi|239605258|gb|EEQ82332.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01] Length = 800 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/790 (32%), Positives = 419/790 (53%), Gaps = 50/790 (6%) Query: 173 LQDVSSK-IVLSETYKNMYDGLSES-DLETALIFSSRT---LIEKEPNYAKVTARFLLEK 227 + D+ S+ I + E + + GL + +E + F++ T + K +Y + +A+ L+E Sbjct: 50 ISDLDSRFIAIDEYFLKIESGLCDDITVEEFISFAAETADSMTTKHYDYGRFSAKILMEY 109 Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287 L+ L + + K ++ Y E F + + K +L + Y Sbjct: 110 LKENTLDSFFAKVDYI--YKNGDFYSEKFYNIVLDNKK--------------FLDELVDY 153 Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +D ++ Y + L Y L ++G IE PQ +RVA+ L E K E Y LLS Sbjct: 154 SKDDSWTYFAILTLKRAYLLTLDGQTIERPQDMLLRVAVQLHGDNLENVK---ETYELLS 210 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +PT+FNSG++ QL+SCFL T + + + G+F ++ ++K GG+ D Sbjct: 211 NNMYTHGSPTIFNSGSKKSQLASCFLLTPIEETVEGLFETVKRCVQISKSGGGVALDLHD 270 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDL 465 + G I T G S+G+IP+++V N + + Q G R+ G YLE WH D+ +FLDL Sbjct: 271 MAAKGTSIRKTGGISKGIIPYIQVLNWSLKYIGQAGSRRSGCPAIYLEPWHKDIFDFLDL 330 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK+ G D R D+ T WI DLFMKRV N W+LF P V L + YGKEFE Y Y Sbjct: 331 RKSIGKDELRARDVFTGMWINDLFMKRVEANEDWSLFCPKSVPGLSNAYGKEFEDMYLEY 390 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E++ D + A +W+ ++ ETG P++ +KD N S Q+++G + SNLC Sbjct: 391 EKKVD------CVVVPAQKVWKAIIESQIETGTPYMLYKDTINNLSNQKNIGTIRCSNLC 444 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 TEI +S +E AVCNL SI L N +FD++ S ++ + + VID N + +++ Sbjct: 445 TEIVQYTSPDEVAVCNLASICLPKFVINGEFDFNLFKSVVKIVTKNANIVIDCNFYPLKE 504 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+KSN HR IGLG+ G +L +PY S A ++ E E + F A+ +S E A++ Sbjct: 505 AEKSNKKHRPIGLGVQGLADVFLMLRLPYESEGARKLNKEIFETLYFGALESSCEEAEKY 564 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCM 764 G Y S+ GS +G+F E+A + T+ R W+EL+K++ G+RNS + Sbjct: 565 GPYESYNGSPISKGIF-----------HWEMANSSTTGRWNWEELRKKILKYGVRNSLLI 613 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA + I +++ +P N+Y + G+F +VN +L+N+L + ++W + + + Sbjct: 614 APMPTAGTSQIFNNNEAFEPFTSNIYTRRTACGEFQMVNRYLMNDLIKLNMWSPEIKNYI 673 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 +GSI NI IP+++K+++ T +EI +I+ A+ RQ ++DQ QSLNL++ +P+ Sbjct: 674 VEQEGSIQNISGIPEEIKELYKTVWEIKMKCVIDLAADRQAFVDQTQSLNLFVAKPTYPI 733 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 L ++ W GLKT YYLR+R TS K T+ L+ + + N +T+ + Sbjct: 734 LSSMHFYGWKRGLKTGMYYLRTRPITSAIKFTV-----DLDMLKKVEKNEATNEELKENE 788 Query: 944 CTSDTECEVC 953 CE C Sbjct: 789 INKSDICESC 798 >gi|311977696|ref|YP_003986816.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba polyphaga mimivirus] gi|81990393|sp|Q7T6Y8|RIR1_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|55664860|gb|AAQ09572.2| ribonucleotide reductase large subunit [Acanthamoeba polyphaga mimivirus] gi|308204750|gb|ADO18551.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba polyphaga mimivirus] Length = 881 Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/786 (32%), Positives = 419/786 (53%), Gaps = 43/786 (5%) Query: 142 APKLKIMMD-DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE----S 196 PK I +D +G++ S+ + VE+ ++ + + + + KN++ L Sbjct: 65 VPKETIYLDHNGSIQVITSEIIRTYVEKIFEKME--VTHLDIDKMTKNIFPKLKSINTIK 122 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D++ +I ++ ++ +Y K+ L+ L + +K +++ Sbjct: 123 DIDNQIISTASEMVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNKS-------- 174 Query: 257 CRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E A ++ E++ +F + + ++Y+RD+ G + L Y IN Sbjct: 175 ----ESNKNAPIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFRTLEKSYLKRINKKI 230 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +E PQ FMRVA+ L ++ + + R E Y LS +F +TPTLFN+GT H QLSSCFL Sbjct: 231 VERPQHLFMRVAITLHYRKNDLD-RIFETYKYLSKGYFTHATPTLFNAGTTHEQLSSCFL 289 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D L I +E A+++K++GG+G T +R GA+I T G++ G + L + ND Sbjct: 290 LGIGDSLEEISECWKECALISKHAGGIGIHMTNIRVEGAYIASTQGEAGG-LRVLTIFND 348 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + NQGGKR G+ ++E WH D+ FLDL+KNTG + R D+ I D+FM+RV Sbjct: 349 ISRYANQGGKRPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERV 408 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ W+L P + +L + YG EF Y YE + ++I A+ LW K++ Sbjct: 409 YKDDVWSLMCPSQCPNLLNKYGDEFTKEYLKYESEG-----IYLKQIRAIDLWFKIMESQ 463 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ETG P++ FKD N +S Q ++GVV+ SNLC EI S +VCNL SI L F Sbjct: 464 IETGVPYVMFKDAINDKSNQINIGVVNGSNLCCEIVEVSDKNNFSVCNLSSI-CLPRFVK 522 Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 F+Y KL R R L+N+IDIN + ++K + +N R IG+G+ G Sbjct: 523 IIDEVPTFNYQKLFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFA 582 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + P+ S A ++ + E I + A++ S +LA+E G Y +++GS QG F D L Sbjct: 583 MFKTPFDSEIARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFD---L 639 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + +L+ W+ L++ + G+RNS PTA+ + I G ++ I+P +N Sbjct: 640 WNFDKSQLS----GMWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTEN 695 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y +S M+G++ V+N L+ +L + +W+ M+ +KY+ GS+ NI IPD++K I+ T Sbjct: 696 IYSRSTMAGEYFVINKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTV 755 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +IE A+ R ++DQ QS+NLY+D+PS +L+ AW GLKT YYLRS+ Sbjct: 756 WEIPQKSIIEMAADRAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKP 815 Query: 908 ATSVEK 913 A+S + Sbjct: 816 ASSANQ 821 >gi|269859792|ref|XP_002649620.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] gi|220066983|gb|EED44452.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] Length = 769 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/637 (35%), Positives = 363/637 (56%), Gaps = 30/637 (4%) Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+ F+Y GL L+ Y IN S +E PQ +M+VA+ L + K Y LLS+F Sbjct: 126 DYLFDYFGLITLFKTYLNKINNSIVERPQDIYMKVAIQLHRSNFDDVKTT---YELLSNF 182 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVR 408 ++ TPTL+NS + PQ++SCFL + DD + GIF +++ A + K++GG+G T +R Sbjct: 183 YYTHGTPTLYNSCLKKPQMASCFLLAMKDDSVEGIFETIKDCASIRKFNGGIGMYLTNIR 242 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA-YLETWHIDVEEFLDLRK 467 + I+ T G+++G+IP +++ ++T N+ ++ CA YLE WH D+ +FL+LRK Sbjct: 243 PNKSKINSTGGEAKGIIPVIRLISETIKYFNKNETKRSTSCAFYLEPWHPDIFDFLNLRK 302 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 NTG + R D +I D+FM+RV N W+LF P + L + +G EF YE YE+ Sbjct: 303 NTGPEDMRARDAFIGLFINDIFMERVQNNENWSLFDPSIATGLINAWGDEFNKLYEYYEK 362 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + I A LW++++ ETG P++ +KD CN S Q ++G + SSNLC E Sbjct: 363 TIPK------ITIPAQKLWKEIICAQIETGTPYLVYKDSCNRNSNQNNLGTIKSSNLCAE 416 Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 I S + T VCNL SI L N NQFD+ +L ++ L+ +IDI+ + ++A Sbjct: 417 IIEYSDANITGVCNLASICLPKFINNANQFDFKQLYQVMKKVTINLNKLIDISFYPTKEA 476 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K SN R IG+G+ G AL + IP+ S +A E+ E + + + S+ELA+ G Sbjct: 477 KYSNEATRPIGIGVQGLADALCKMRIPFESSQAKELNRMIFETMYYSVMETSMELAKTYG 536 Query: 707 AYSSFKGSLWDQGVFPID------SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 Y S++ +G+F + +I +L+ + D W++L+++++ G+RN Sbjct: 537 PYPLITNSMYSKGIFHFEKYLKNKNIDILSGLWD-----------WEDLREKIRLYGVRN 585 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S ++I PTAT A ICG S+ ++P N+Y + G+F +VN +L+N+L + LW M Sbjct: 586 SLTLSIMPTATTAQICGNSECVEPITSNIYTRRTFVGEFQIVNKYLMNDLIKLGLWSNEM 645 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + ++GSI NI IP ++K ++ T +EI +++ A RQ ++DQ+QSLNL++ +P Sbjct: 646 KQLIIEYNGSIQNIPTIPSNIKNLYKTVWEIKMKCILDMAHERQAFVDQSQSLNLFISQP 705 Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + L ++ W +GLKT YYLR+ S K T+ Sbjct: 706 TYAILSSMHFYGWKLGLKTGIYYLRTSPIASAIKFTI 742 >gi|195953681|ref|YP_002121971.1| ribonucleoside-diphosphate reductase, alpha subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933293|gb|ACG57993.1| ribonucleoside-diphosphate reductase, alpha subunit [Hydrogenobaculum sp. Y04AAS1] Length = 1005 Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust. Identities = 236/617 (38%), Positives = 351/617 (56%), Gaps = 44/617 (7%) Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 I E L +++ ++ + N++DG+ + + ++ S T +P Y + L Sbjct: 43 IEEWTMEDLNEINIDEIMEDIEINIFDGIETAAIFQHILHSLLTRAIDDPIYDAMARNVL 102 Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-DLVYLAN 283 L+++ ++ +Y P+KA Y E F YI+ V+ LL E + + DL LA Sbjct: 103 LQRIYKQAFGGMYS-PKKA--------YKELFIDYIDNAVELGLLDEKLASYYDLEMLAL 153 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKR--- 338 +L +RD ++ GL L DRY + G+ +E PQ F+MRVAMG+AL E E R Sbjct: 154 ELVPKRDQLLKFNGLYNLMDRYLIKDLDTGNILEAPQWFWMRVAMGVALVEKTPEDRNHW 213 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A+EFY+++SS F+ STPTLFNSGTR PQLSSCF+ DDL IF +++ ML K++G Sbjct: 214 AIEFYHMMSSMEFIPSTPTLFNSGTRFPQLSSCFVVDEEDDLSKIFETVKQVGMLNKHAG 273 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G T +R + I GKS G+IPFLK+ ++T AV+QGG+R+G+ A LE WH+D Sbjct: 274 GVGLPATKLRAKDSIIRSIQGKSSGIIPFLKIIDETITAVSQGGRRRGSALASLEPWHLD 333 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V +F+ ++ GDD +R ++ A ++ D FM+RV +N W LF P + L YGK+F Sbjct: 334 VFDFVRTKRKWGDDSQRFKNLKIALFLNDEFMRRVEENGDWYLFDPADCPKLVSTYGKKF 393 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 Y R+A G+I+ +KI AV L+++ + +TG PW TFKDP NIR P +H G Sbjct: 394 SREYSKCIRKALSGKIR-HKKIKAVELFKEAIENTIQTGEPWYTFKDPINIRHPNKHTGT 452 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI----NLLAHF----------------------A 612 + ++NLCTE L S+ + CNLGS+ LL HF + Sbjct: 453 ILTTNLCTEQLLVSTYDSIESCNLGSLVLPRALLTHFRVNEHAQPLNSSENGSKHTKFLS 512 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 NN FD++K + IR A+R LDNVID N + +E +K R IGLG MG+Q + L + Sbjct: 513 NNTFDWEKFKAVIRKAIRFLDNVIDANYYALEAVEKGTKQSRKIGLGFMGYQDMIEKLKL 572 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P S EA+++ D+ E +S+ AI SVELA+ERG Y +F GS W +G+ PID++ L Sbjct: 573 PVDSKEALKLLDKIGETMSYVAIETSVELAKERGTYPNFDGSDWSKGILPIDTLEHL--F 630 Query: 733 RDELAMNRTSRLPWDEL 749 R+ N P++++ Sbjct: 631 RERSLTNDKYTTPYNDM 647 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 2/157 (1%) Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+EL+++VK G+RN+ +APTATI+ I G SQS +P Y +Y ++N++G F VN Sbjct: 746 WEELREKVKQ-GIRNACQTTLAPTATISIIAGTSQSFEPYYALVYSRTNIAGRFLEVNEN 804 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + +LK+ LWD + D+ GSI +I+ IP ++K I+ TA+EID I+ A+ QK Sbjct: 805 FIRDLKKLGLWDR-LREDVLLQQGSIQDIKEIPQEIKDIYKTAYEIDTEVYIKQAAVLQK 863 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 WID + S NLY + +K+ IY +AW GLK TYY Sbjct: 864 WIDSSISRNLYFNTRDPQKIMEIYLKAWKYGLKATYY 900 >gi|215401540|ref|YP_002332844.1| RR1 [Spodoptera litura nucleopolyhedrovirus II] gi|209484081|gb|ACI47514.1| RR1 [Spodoptera litura nucleopolyhedrovirus II] Length = 904 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 237/641 (36%), Positives = 363/641 (56%), Gaps = 27/641 (4%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L ++K+ RD+ ++Y G + L + Y L +N E PQ MRVA+ + + A+ Sbjct: 259 LNREIKHNRDYDYKYFGFKTLTNGYLLKVNDVIAERPQHMLMRVALAI---HGDDVMSAI 315 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E Y L+S F ++PTLF +GT PQ+ SCFL + +D + GI+ L E+A+++ GG Sbjct: 316 ETYQLMSLGTFTHASPTLFAAGTCRPQMCSCFLQCIKEDSIDGIYKTLHESALISNLGGG 375 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 LG V+ + A +GT KS G++ L+V N+ V+QGGKRKGA+ AY+E WH ++ Sbjct: 376 LG---LSVQSVSAQYNGTT-KSGGLVSMLRVFNNMVRHVDQGGKRKGALAAYVEPWHPEI 431 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 + L+LR+N G + + D+ WIPDLFM+RV +N W+LF P + L D YG FE Sbjct: 432 YDVLNLRRNMGSEDAKARDLMLGLWIPDLFMERVKENKEWSLFCPKKYPGLLDEYGSSFE 491 Query: 520 IAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I YE YE+ K++ R++ A L+R ++ ETG P++ +KDPCN S Q+++G+ Sbjct: 492 ILYEKYEKN------KLYERQVKARDLFRFIVETNVETGGPYMLYKDPCNKFSNQKNLGI 545 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SNLC EI +ETAVCNL SI N + FDY L + VR L+ +I Sbjct: 546 IKCSNLCAEIVQYCDKDETAVCNLASIAVNKCVNVKTKTFDYVLLNRLTKIVVRNLNKII 605 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D N + A SN HR +G+G+ G A LL IPY S EA + E I F A+ Sbjct: 606 DSNHYPTAGAANSNKKHRPVGVGIQGLADAFVLLDIPYDSEEARSVNYMIAETIYFSALE 665 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA+ G Y S++ S +G D+ + D L W +L+++++ Sbjct: 666 ASCELAKIDGPYESYENSPLFRGTMHYDNYNIYP--TDHL-------WNWSKLREKIQRH 716 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTAT A I G ++S +P N+Y++ ++G+F VVN +L+ L +++ Sbjct: 717 GVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIKALVDLNIY 776 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + + +GS+ NI+ IP +K + TA+EI +I+ A+ R +IDQ+QSLNL+ Sbjct: 777 TPELRNKILAENGSVQNIDEIPQHVKDLFKTAWEIKSKCMIDMAADRAPFIDQSQSLNLF 836 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + EP+ + I+ W LKT YYLR++ A + T+ Sbjct: 837 VAEPTYSVMSSIHFYTWQKQLKTGMYYLRTKPAAQATQFTV 877 >gi|312066374|ref|XP_003136240.1| ribonucleoside-diphosphate reductase large subunit [Loa loa] gi|307768605|gb|EFO27839.1| ribonucleoside-diphosphate reductase large subunit [Loa loa] Length = 1038 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 267/811 (32%), Positives = 417/811 (51%), Gaps = 128/811 (15%) Query: 166 VEEACSGL-QDVSSKIVLSE-TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + + C GL QD I +S+ +Y G++ +L+ + +I K P+YA + +R Sbjct: 32 IMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAAEIAADMITKHPDYATLASRI 91 Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV- 279 + L ++ + + V K+ ATH + G L+ +++ FD++ Sbjct: 92 AVSNLHKKTEKLFSKVSKRLYNATHPK--------------SGRHMPLISKNI--FDIIQ 135 Query: 280 ----YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 L + + +ERDF + Y GL+ L Y L ING E PQ MRVA+G+ E Sbjct: 136 NNADILDSAIIHERDFCYTYFGLKTLERSYLLQINGELAERPQHMLMRVALGIHGDNIEA 195 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 A+E YNL+S F +TPTLFNSGT PQ+SSCFL T+ DD + GIF L++ A+++ Sbjct: 196 ---ALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFDDSIEGIFETLKKCALIS 252 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K +GG+G + +R G+ I GTNG S G++P L+V N+ A Sbjct: 253 KSAGGIGLNVHCIRATGSAIAGTNGVSNGLVPMLRVFNNAA------------------- 293 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 RKN GD+ R D+ W+PDLFM+RV + W+L P E L D + Sbjct: 294 -----------RKNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLMCPAECPGLEDSW 342 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+ FE Y YE + + +++ A LW +++ ETG P++ +KD CN ++ QQ Sbjct: 343 GEAFEKLYMQYEEEG-----RYRKQVPARKLWETIVSTQIETGMPYMVYKDTCNRKTNQQ 397 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVL 632 ++G + SNLCTE+ L SS EE AVCNL SI L+ F +++ FD+ L + VR L Sbjct: 398 NLGTIKCSNLCTEVVLYSSREEIAVCNLASIA-LSRFVSSEMTFDFKMLREITKVVVRNL 456 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VID N + + +A++SN HR IG+G+ G A L+ P+ S +A ++ E + + Sbjct: 457 NKVIDRNYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKARDLNKRIFETMYY 516 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS ELA E+G Y S++ S PI D + T++ W+ L+K+ Sbjct: 517 AALEASCELAMEQGPYESYERS-------PILQF-------DMWGVTPTNQWDWETLRKK 562 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF------------- 799 + G+RNS +A PTA+ A I G ++SI+P N+Y ++ +SG F Sbjct: 563 IAMYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQVKFHDTLLIRFE 622 Query: 800 ---------------------------TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 V N L+N+L + DLWD+ M ++ + GSI Sbjct: 623 RITSEITFLQSFLLIAFLCLEDYVISLKVFNMHLMNDLMRLDLWDDDMKLEIIKNKGSIR 682 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 NIERIP +++ ++ T +E+ +I+ A R +ID +QSLN+++ P+ + ++ Sbjct: 683 NIERIPQEIRDLYKTVWEMSQRDIIDMAVDRGAFIDHSQSLNIFIARPNYGNITSMHFYG 742 Query: 893 WLMGLKT-TYYLRSRSAT-----SVEKSTLK 917 W GLKT YYLR+R A +V+K+ LK Sbjct: 743 WQKGLKTGMYYLRTRPAVDAVQFTVDKTRLK 773 >gi|9634360|ref|NP_037899.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera exigua MNPV] gi|6960598|gb|AAF33668.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera exigua MNPV] Length = 770 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 239/642 (37%), Positives = 360/642 (56%), Gaps = 33/642 (5%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L N++K+ERD+ ++Y G + L + Y L I+ +E PQ MRVA+ + + K + Sbjct: 128 LNNEIKHERDYNYKYFGFKTLTNGYLLKIDDVIMERPQHMLMRVALAI---HGDDVKSVI 184 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E Y L+S F ++PTLF++GTR Q+ SCFL ++ DD + GI+ L E+A+++ GG Sbjct: 185 ETYQLMSLGTFTHASPTLFSAGTRRQQMCSCFLQSIKDDSVDGIYKTLHESALISNLGGG 244 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 LG + N G++ L+V N+ V+QGGKRKGA+ AY+E WH ++ Sbjct: 245 LG------------LSAQNSGGSGLVNMLRVFNNMVRHVDQGGKRKGALAAYIEPWHPEI 292 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFL+LR+N G + + D+ WIPDLFMKRV N W+LFS DL D YG +FE Sbjct: 293 YEFLNLRRNMGSEDTKARDLMLGLWIPDLFMKRVKNNQMWSLFSHKTCPDLADKYGFDFE 352 Query: 520 IAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 + Y +YE +V+ R++ A L+R ++ ETG P++ +KD CN S Q+++G Sbjct: 353 MRYCDYENA------QVYERQVKARDLFRFIVETNVETGGPYMLYKDHCNNFSNQKNLGT 406 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SNLC EI ETAVCNL SI N FDY L + VR L+ +I Sbjct: 407 IKCSNLCAEIVQYCDENETAVCNLASIAVNKCVDVDAKTFDYVLLKHLTKIIVRNLNKII 466 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + ++++SN HR IG+G+ G A LL I Y S +A + E I F A+ Sbjct: 467 DVNHYPTAESERSNKKHRPIGVGIQGLADAFVLLDIAYDSDDARFVNYSIAETIYFAALE 526 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKT 755 AS ELA+ G Y S+ S +G+ + DE + ++ L W+EL+ + Sbjct: 527 ASCELAKINGPYESYTDSPVSRGILHFHNYD------DENGVYHSNNLWDWNELQCNINK 580 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTAT A I G ++S +P N+Y++ ++G+F VVN +LV L D+ Sbjct: 581 YGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLVKALIDLDI 640 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + + + + +GS+ NI+ IP +K + TA+EI +I A+ R +IDQ+QSLNL Sbjct: 641 YTPELRNKILAENGSVQNIDEIPQHVKNLFKTAWEIKSKCIINMAADRAPFIDQSQSLNL 700 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ EP+ + I+ AW LKT YYLR++ A K T+ Sbjct: 701 FVAEPTYSVVSSIHFYAWEKKLKTGMYYLRTKPAAQATKFTV 742 >gi|91080435|ref|XP_968743.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum] gi|270005755|gb|EFA02203.1| hypothetical protein TcasGA2_TC007860 [Tribolium castaneum] Length = 798 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/781 (31%), Positives = 400/781 (51%), Gaps = 52/781 (6%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +Y G++ +L+T ++ + P+YA + AR + L+++ H Sbjct: 52 LYPGVTTVELDTLAAETAIVMGADHPDYATLAARIAVSNLQKQT-----------KKHFS 100 Query: 249 QCLYPEYFCRYIEEGVKARLL---HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + Y + G K L+ H ++ + L + + Y+RDF++ Y ++L Y Sbjct: 101 DVISDLYHAVDPQTGEKTPLISDQHYEIIMKNASRLNSCIVYDRDFSYNYFAFKLLERSY 160 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 ING +E PQ MRVA+G+ ++ + A+E YN +S +F+ S+ TL +GT + Sbjct: 161 LFKINGKTVERPQHMLMRVAVGIHGEDIDS---AIETYNYMSEGYFIHSSATLLTAGTPY 217 Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 P L S + +PDD L GI+ + ++ +G + +R G I GTNG S G+ Sbjct: 218 PYLPSTYSIAMPDDSLEGIYECISNCIKISNTTGRISVHIQNIRAKGTEIAGTNGVSNGL 277 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +P L+V N++A Q + +LE WH D+ +FL+L++ TG D R D+ A W Sbjct: 278 VPMLRVFNNSAWLNRQSENQPSNQAIFLEPWHADILDFLNLKRTTGKDEYRARDLQYALW 337 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 +PDLFM RV + W+L P + L + +G+EFE YE YE E + ++I A Sbjct: 338 VPDLFMHRVKNDEKWSLMCPHQAQGLPNCWGQEFEKLYEKYE-----SEGRFVKQIPARD 392 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +WR + ETG P+I +KD CN +S QQ++G + SS+L TE SSS+E A C S Sbjct: 393 VWRAICVSQMETGSPYILYKDACNKKSNQQNLGTIKSSSLSTESIQYSSSDEIAACITAS 452 Query: 605 I--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + N+ + N +D++KL ++T + L+ ID++ + +A+ SN HR IG+G+ G Sbjct: 453 VALNMFVNPERNGYDFEKLKQVVKTLTKNLNKAIDVSAYPSPEARTSNLRHRPIGIGVQG 512 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 LL +P+ SPEA + + E + + A+ AS E+A+ G YS++ GS QG Sbjct: 513 LADTFILLRMPFESPEARSLNVQIFETLYYAALEASSEIAERDGPYSTYDGSPLSQGRLQ 572 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D G+ T W LK+R+ G+RNS +A+ PT + A I G +QSI Sbjct: 573 YDMWGV----------EPTKLWDWVALKQRIAKHGVRNSLLVALIPTISTAQILGNNQSI 622 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+ V+ S +F VN L+ +L +R LW + ++ +GS+ NI IPDDLK Sbjct: 623 EPYLSNVQVRRVNSSEFRDVNQHLLKDLTERGLWTSDLKQEVIERNGSVQNIAGIPDDLK 682 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 I+ T +EI +IE A+ R +IDQ+Q++N+++ PS + ++ W GLKT Y Sbjct: 683 CIYKTVWEIPQKIVIEMAADRGAFIDQSQAMNVHIGAPSYAVMSSMHFYGWQKGLKTGMY 742 Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPN---------SSTHSLGIPSSCTSDTECEV 952 LR+ + V+ +G + V V N S + S + CE+ Sbjct: 743 NLRTNPVSVVQ-------NGNRSKVSVVQENGEKSDDMKKSPEEDAALQCSLQNPGACEM 795 Query: 953 C 953 C Sbjct: 796 C 796 >gi|194377918|dbj|BAG63322.1| unnamed protein product [Homo sapiens] Length = 570 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 217/542 (40%), Positives = 332/542 (61%), Gaps = 18/542 (3%) Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA Sbjct: 4 DSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARY 63 Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N Sbjct: 64 VDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETN 123 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ET Sbjct: 124 QDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIGSQTET 178 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQ 615 G P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + Sbjct: 179 GTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHT 238 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ Sbjct: 239 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 298 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 299 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----- 353 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + + Sbjct: 354 -----TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVL 408 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI Sbjct: 409 SGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKT 468 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + Sbjct: 469 VLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQF 528 Query: 915 TL 916 TL Sbjct: 529 TL 530 >gi|12002837|gb|AAG43397.1|AF168794_1 ribonucleotide reductase subunit M1 [Xenopus laevis] Length = 520 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/534 (40%), Positives = 326/534 (61%), Gaps = 18/534 (3%) Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLG 401 YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K +GG+G Sbjct: 2 YNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGIG 61 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVE 460 + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH DV Sbjct: 62 VAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDVF 121 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 +FLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P E L +++G +FE Sbjct: 122 DFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFEE 181 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 YE YER+ + + + A +W ++ ETG P++ +KD CN +S QQ++G + Sbjct: 182 LYEKYEREG-----RARKVVKAQQVWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 236 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDIN 639 SNLCTEI +S +E AVCNL S+ L + + + FD+ KLA + V+ L+ +I+IN Sbjct: 237 CSNLCTEIVEYTSEKEVAVCNLASLALNMYVTSERSFDFKKLADVTKVIVKNLNKIIEIN 296 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + +A+ SN HR IG+G+ G A L+ P+ S +A + + E I + A+ +S Sbjct: 297 FYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFQSEKAQMLNKQIFETIYYAALESSC 356 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E G Y +++G +G+ D + T W LK+++ G+R Sbjct: 357 ELAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGIR 406 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L ++ LW+E Sbjct: 407 NSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNEE 466 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 M + + ++GSI N+ IP +LK+++ T +EI +I A+ R +IDQ+QSL Sbjct: 467 MKNQIIANNGSIQNVPDIPAELKELYKTVWEISQKTVITMAADRGAFIDQSQSL 520 >gi|330897026|gb|EGH28547.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] Length = 417 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/388 (51%), Positives = 268/388 (69%), Gaps = 2/388 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E+EPNY+ VTAR L++ LR E L + ATHHEM LY + Y+ G+K L Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTAGIKFEL 269 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L+ + +FDL L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A++E +E RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 +NAML+K++GGLGNDWTPVR LG++I G Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKG 417 >gi|282174153|ref|YP_003358255.1| ORF116 [Anguillid herpesvirus 1] gi|281308996|gb|ADA57879.1| ORF116 [Anguillid herpesvirus 1] Length = 833 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 234/664 (35%), Positives = 349/664 (52%), Gaps = 50/664 (7%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y RD+ F + ++ L Y L +N +E PQ FMR+A+G+ + E +E Y Sbjct: 133 IDYSRDYTFNFFAIRTLERAYLLKVNERVMERPQHLFMRIAIGIHGFDLES---VLETYR 189 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403 LS F ++PTLF++GT +L+SC+L T+ DD + GI+ LQE A +AK SGG+G Sbjct: 190 CLSEKRFSHASPTLFHAGTNFAKLASCYLVTLADDSIAGIYSTLQECAQIAKCSGGIGAA 249 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462 + VR G+ I+ TNG + G++P L+V N V+QGG KR GA+ +LE WH D+ + Sbjct: 250 ISNVRAEGSAINSTNGTANGLVPMLRVFNAMTRMVDQGGNKRPGAMAVWLEPWHADIAAW 309 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LDL+KN GDD R D+ WI DLFM+RV + W+L P + L D+YG +F Y Sbjct: 310 LDLKKNLGDDGIRARDLFYGLWISDLFMERVKDDQMWSLMCPKKCPGLMDVYGSDFVALY 369 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE Q +++ A LW +L E G P++ +KD CN +S QQHVGVV Sbjct: 370 TKYESQG-----MYVKQVEARELWTHILRSQMENGMPFMMYKDSCNRKSNQQHVGVVKCG 424 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFA-----------------------------N 613 NLCTEI S AVCNL ++ L A Sbjct: 425 NLCTEIVEVSEPHRPAVCNLAAVCLPTCVACECGIRQASRTEVASSASSAVQACEDPTCR 484 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 FD+ +L V+ L+ VID + + + A N R +G+G+ G +L + Sbjct: 485 KSFDFGELGRLTEVLVKNLNRVIDKSDYAFDGANHRNSQDRPLGIGVQGLADVFAMLGLA 544 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + EA + + E + +HA++AS +LA+E Y ++KGS QG+F D G+ Sbjct: 545 FDGTEAARLNVQIFETMYYHAMAASCKLAEEDQPYPTYKGSPVSQGIFQFDMWGVKPSAM 604 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + W LK+RV+ G+RNS +A PTA+ A I G +++ +P NL+ + Sbjct: 605 HD----------WTSLKRRVQKYGVRNSLLLAPMPTASTAQIFGNNEAFEPFTNNLFTRG 654 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SGDF ++N LV EL + +W E L +GSI E +P + + T +EI Sbjct: 655 VLSGDFQIINPHLVRELIRLGMWGEETRMRLMADNGSIRTWEDVPQHTRDVFKTVWEISQ 714 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +I A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLRSR A + Sbjct: 715 KTIINMAADRAPFIDQSQSLNIHMADPNVSKLSSMHMYGWQKGLKTGMYYLRSRPAVNAI 774 Query: 913 KSTL 916 + T+ Sbjct: 775 QFTV 778 >gi|156312488|ref|XP_001617836.1| hypothetical protein NEMVEDRAFT_v1g8281 [Nematostella vectensis] gi|156196039|gb|EDO25736.1| predicted protein [Nematostella vectensis] Length = 294 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/294 (63%), Positives = 240/294 (81%), Gaps = 2/294 (0%) Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLCTEITLN++ E AVCNLGS+NL+ H NN+ + KL TI+TA+R+LDNV+DIN + Sbjct: 1 SNLCTEITLNTNEREIAVCNLGSVNLVNHIENNEINVAKLEKTIKTAMRMLDNVVDINFY 60 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +EKAK SN HR +GLG+MGFQ LH+L IPYAS EAVE AD+SME IS++A SAS +L Sbjct: 61 PVEKAKNSNLAHRPVGLGMMGFQDCLHMLRIPYASKEAVEFADKSMELISYYAFSASSKL 120 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMR 759 A+E+G YSS+K SLWDQG+ P+DS+ LLA+ R L ++ + +L WDEL+ +K GMR Sbjct: 121 AKEKGTYSSYKDSLWDQGILPLDSLKLLAKSRGAQYLDVDESKKLDWDELRSHIKEHGMR 180 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NSNC+AIAPTATIANI G+S SI+P+YQN++VKSN+SG+FTV+N FL+N+LK LWDE Sbjct: 181 NSNCLAIAPTATIANIVGISASIEPTYQNIFVKSNLSGEFTVINDFLINDLKNEGLWDEV 240 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 M+SD+KY DGS+ I+RIPD LK+++ATAFE+DP WL+E+ASRRQKWIDQAQSL Sbjct: 241 MLSDIKYFDGSLQQIDRIPDSLKQLYATAFEMDPKWLVEAASRRQKWIDQAQSL 294 >gi|288800287|ref|ZP_06405745.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332500|gb|EFC70980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 839 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 295/920 (32%), Positives = 457/920 (49%), Gaps = 133/920 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRNG V +D +KI+ AI K+F AS V ++ N V R ++ + Sbjct: 1 MEIIKRNGNVEQYDKNKIAVAIQKSF-------ASVGTEVNIVLINEMVDAVERFIETHS 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKL 145 + ++E IQDQVE +LMQ+G + + Y+L+R +R++ R A ++ +DA + P L Sbjct: 54 D--MRNVESIQDQVEKTLMQNGFYDEAKSYILFRFQRTERRNAINNIVADAEDEDLKPIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204 + + D T + + S ++LS+ +K+ D + ++D +AL+ Sbjct: 112 RKISSDYTSVEY--------------------SLLLLSDKFKSFCKDDMKQADKLSALVK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY-FCRYI-E 261 ++ + +E PN+ + AR L KL R + A + ++ Y RY+ + Sbjct: 152 AAVEMTTQEAPNWEFIAARLLSYKLNRSI----------AAFEDSVGVHSFYDKLRYLTD 201 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 E + + S ++ A +K ER+ Y GL +L RY + N IE Q Sbjct: 202 ERLYGDYILASYSPEEIAQAATFIKEERNDLLNYSGLDLLMKRYLIRTYNNKPIESIQEM 261 Query: 321 FMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 ++ +A+ LA+ E E V +FY++LS +TPTL N+ QLSSCF+ TVPD Sbjct: 262 YLGIALHLAINEKEDRMLWVNKFYDILSKLEVTMATPTLSNARKPFHQLSSCFIDTVPDS 321 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ +L A ++K+ GG+G + VR G I G G + GV+ ++K+ NDTAVAV+ Sbjct: 322 LEGIYRSLDNFAQVSKFGGGMGMYFGKVRAAGGKIRGFKGAAGGVVRWMKLVNDTAVAVD 381 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497 Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N Sbjct: 382 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQEDINQ 441 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P+E+ L D YG+E+E Y + A R +S + R +L Sbjct: 442 PWHLFCPNEILSIKGYCLEDYYGEEWEKRYIDCVSDARLTR----RTLSVKDIVRLVLRS 497 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N S E+ Sbjct: 498 AVETGTPFTFNRDHVNKANPNGHKGMIYCSNLCTEIAQNMSEIESVSTEVKTDDGDTVVV 557 Query: 598 --------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 VCNL S++L N+ +L +RT +R LDNVIDIN + + A+ + Sbjct: 558 RASKPGDFVVCNLASLSLGHLPLENE---SELTDVVRTVIRALDNVIDINFYPLPYAQIT 614 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N +R++GLG+ G+ AL + I + S E ++ D+ E I+ A+ AS ++A+++G+Y Sbjct: 615 NQRYRSLGLGVSGYHHALAVRGIKWESQEHLDFVDKVFETINRAAVEASSDIAKQKGSYK 674 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G E R P W L +VK GMRN+ +AIAP Sbjct: 675 YFEGSDWQTG---------------EYFTKRGYTSPEWTALAAKVKEQGMRNAYLLAIAP 719 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + DP Q +++ V EL R W Sbjct: 720 TSSTSIIAGTTAGTDPVMQRFFLEEKKGAMLPRV----APELSDRTFW------------ 763 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 ++ +A+ ID W + +A RQ+ IDQAQS NLY+ ++ S ++L Sbjct: 764 ---------------VYKSAYNIDQQWTVRAAGVRQRHIDQAQSQNLYITNDFSMRQLLE 808 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 LYLLAWRSGVKTIYYVRSKS 828 >gi|297837607|ref|XP_002886685.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp. lyrata] gi|297332526|gb|EFH62944.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp. lyrata] Length = 688 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/651 (36%), Positives = 360/651 (55%), Gaps = 55/651 (8%) Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 ++ + ++ Y+RDF +++ G + L Y L ++G +E PQ MRV +G+ +++ + Sbjct: 75 ILIMPREIVYDRDFDYDFFGFKTLERLYLLKVHGKVVERPQHMLMRVVVGIHMEDIDS-- 132 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ Y+L+S F ++PTLFN+GT PQLSS FL + DD I LQ+ ++ K + Sbjct: 133 -AIKTYHLMSQRLFTHASPTLFNAGTPRPQLSSSFLICMRDD--SIESTLQKCDVIRKSA 189 Query: 398 GGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 G + + H I GTNG V+P L V GGK+ G YLE WH Sbjct: 190 GSIS--------VSVHNIQGTNG----VVPMLDVDQG-------GGKKNGPFAVYLEPWH 230 Query: 457 IDVEEFLDLRKNTGDDRRRTHD-MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 D+ EFL ++KN G + + M A WIPDLFM+RV + W+LF P+E L D +G Sbjct: 231 ADIFEFLKIQKNHGKVQNSQEEHMAIALWIPDLFMERVKHDGKWSLFCPNEAPGLADCWG 290 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 EFE Y YER+ K + A + +LT ETG P++ FKD CN +S QQ+ Sbjct: 291 TEFERLYTKYEREG-----KAKKVFPAQEPFFDILTSQLETGMPYMLFKDSCNRKSNQQN 345 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINL----------LAHFANNQ---FDYDKLA 622 +G + SS+LCT + +S ET VCNL SI L LA ++ FDYDKLA Sbjct: 346 LGTIKSSSLCTGVIEYTSPTETTVCNLASIALDVPLDSHPSKLAGSLRSKSRYFDYDKLA 405 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 LD +ID N + +E A+ SN HR IG+G+ G A LL +P+ SPEA ++ Sbjct: 406 EVTAIVTNDLDRIIDGNYYPVETAETSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQKL 465 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I +HA+ AS ELA AY ++KGS +G+ D + ++ Sbjct: 466 NKDIFETIYYHALKASSELAARNDAYETYKGSPMSKGILQPDMWNVTP----------SN 515 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 R WD L++ + G+RNS +++ PTA+ + I G ++S +P N+Y +SG+ +V Sbjct: 516 RWDWDFLREMISKNGVRNSLLVSLMPTASTSQILGNNESFEPYTSNIYSHRGLSGESILV 575 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N L+++L + LW + + +GSI N+ IPDD+K I+ TA+EI +++ A Sbjct: 576 NKHLLHDLTEMGLWTPTLKEKIIDENGSIRNVPEIPDDMKAIYRTAWEIKQRTVVDMAVD 635 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 R +IDQ+Q+LN+ L+EPS +KL ++ W GLKT +YLRSR+ T V+ Sbjct: 636 RGCYIDQSQTLNINLEEPSYQKLTSLHFYTWTKGLKTGMHYLRSRATTMVK 686 >gi|320120416|gb|EFE27702.2| ribonucleoside-diphosphate reductase, alpha subunit [Filifactor alocis ATCC 35896] Length = 842 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 298/924 (32%), Positives = 462/924 (50%), Gaps = 138/924 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q++KR+G FD SKI AI KAF++V S IR ++ + E+ T+ + + Sbjct: 1 MQILKRSGEKREFDTSKIETAIQKAFLSVGLPVDSEKIR--SMVDTIEERVRTQFPKGH- 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 IV +E+IQD VE L+++ ++ + + Y+LYR +R + SD I +L Sbjct: 58 ---IVTVEEIQDLVEIVLIENNYYAVVKSYILYRASHHTMRKVIEDFEDYFSDKSIVEEL 114 Query: 146 ----KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 KI +D ++F ++ + ++ ++E + Sbjct: 115 REIQKIFTEDVYNLTFLFQKFKAFIK-----------------------TNMTEEEYLGI 151 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI ++ L KE P + V AR L +L + + ++A E+ + Sbjct: 152 LIRAASELTSKEAPKWEFVAARLLSLQLNKRI-------EERANRLELYSFRDKIHYLTK 204 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQA 319 E+ +L + D ++ L + LK ERD+ F Y GL ++ RY + G +E Q Sbjct: 205 EKRYGDYILEQYQED-EIDELESYLKQERDYLFNYSGLDLVIKRYLITDREGEVLEKVQE 263 Query: 320 FFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FM +AM LA+ E E K K A + Y+++S +TPT+ N+ QLSSCF+ TVPD Sbjct: 264 MFMGIAMHLAIPEKENKVKWAKKIYDVISQLKVTMATPTMSNARKPFHQLSSCFIDTVPD 323 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ + ++K+ GG+G + VR +G+ I G G + GVI ++K+ANDTAVAV Sbjct: 324 TLDGIYRSITNFSQVSKHGGGMGLYFGKVRAMGSDIRGHKGVAGGVIRWIKLANDTAVAV 383 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496 +Q G R+GA YL+ WH DV EFL +R N GDDR + HD+ A +P+ F K +N Sbjct: 384 DQLGVRQGACAVYLDIWHKDVPEFLQIRTNNGDDRMKAHDVFPAICVPNYFWKLAKENRD 443 Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 A W + P E+ L D YG+E+E E Y+ + I R I+ + R +L Sbjct: 444 ANWYMMCPHEIEQVKGFRLEDCYGEEWE---EKYQSCIEDSRIDK-RVITIKDMVRLILR 499 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597 ETG P++ +D N +P H G+++SSNLCTEI N + E+ Sbjct: 500 SAIETGTPFVFNRDIVNEYNPNSHKGMIYSSNLCTEIAQNMQAIESISTEIVVVDGEEIV 559 Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S+ L N+ + +++ ST+ VR LDNVI++N + + AK Sbjct: 560 VEKNKAGDFVVCNLASLVLGNIDVKNKKELEEVVSTV---VRALDNVIELNYYPLPYAKI 616 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG G+ +L + + S E ++ ADE E I++ AI S EL++E+GAY Sbjct: 617 TNQKYRAIGLGTSGYHHSLVKNGMLFQSEEHLKFADEVYEDINYFAIKTSCELSKEKGAY 676 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G + D+ + T W+EL+K V GMRN MA+AP Sbjct: 677 PYFEGSDWSNGNY-----------FDKRNYHSTR---WNELRKEVNQYGMRNGYLMAVAP 722 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T + + I G + SIDP V+ + + E K Sbjct: 723 TGSTSVISGTTASIDP----------------VMKRYFLEEKK----------------- 749 Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 G I + R+ DL ++ A EID W+I+SA RQ+ IDQ+QS+NLY+ E S Sbjct: 750 GQI--VPRVAPDLTAETFWMYENAHEIDQNWVIQSAGIRQRHIDQSQSVNLYITTEFSMS 807 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ +Y A+ G+KT YY+RS+S Sbjct: 808 RMLKLYISAYEHGVKTIYYVRSKS 831 >gi|293401950|ref|ZP_06646090.1| ribonucleoside-diphosphate reductase, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304608|gb|EFE45857.1| ribonucleoside-diphosphate reductase, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 835 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 298/928 (32%), Positives = 455/928 (49%), Gaps = 155/928 (16%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G + +FD K+ +A+ KAF+A D+ + +Q + Q + Sbjct: 3 MKIIKRDGTIQTFDSEKMIQAMKKAFVA-------------DVPMDQLKQIAMEITQEIQ 49 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145 + V +EDIQD VE LM + + Y+LYRE+R + R H D + P Sbjct: 50 GSAKVSVEDIQDLVEQKLMAYQFYNEAKAYILYREKRKEKRQMLLELCHEVQDEKLLP-- 107 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + M +++ D+ + + ++ + + + + L+ + Sbjct: 108 ----------------IFMQIQKDFDETYDLHALYIKFHSF--LKETMGHEERLQMLMKA 149 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEYF 256 LI KE P + + ARFL +L +E+ LT+ Y+K Q + Q LY Y Sbjct: 150 CVELISKETPKWEYIAARFLSYQLHQEINARMKQLQLTSFYEKIQYLSK---QGLYGAYM 206 Query: 257 C-RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314 Y +E + L +K ERD F Y GL+++ RY L + ++ Sbjct: 207 LDAYQKEEIDE--------------LKRYVKDERDALFTYSGLELVVKRYLLRTHDLQLM 252 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FM +AM LA+ ET + A + Y++LS+ +TPT+ N+ + QLSSCF+ Sbjct: 253 ETPQEMFMGIAMHLAIPETNRVYWAKQIYDILSTLKVTMATPTMANARKPYHQLSSCFID 312 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV D L I+ ++ A ++KY GG+G + VR G+ I G G + GVI ++K+ NDT Sbjct: 313 TVADTLANIYKSIDNFAQISKYGGGMGLYFGKVRANGSDIRGFKGAAGGVIRWIKLVNDT 372 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 A AV+Q G R+GAV YL+ WH D+ EFL+LR N GDDR + HD+ A PDLF K Sbjct: 373 ATAVDQLGVRQGAVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAICYPDLFWKMAK 432 Query: 495 Q--NAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 + NA W L P E+ L D YG+E+E E Y + I R++ L R Sbjct: 433 EDLNATWYLMCPHEIGKVKGYQLEDFYGEEWE---ERYFDCVNDARISK-REMILKDLVR 488 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------- 594 +L ETG P+ +D N +P H G+++ SNLCTEI N S+ Sbjct: 489 LILKSAVETGTPFTFNRDQVNKMNPNGHKGMIYCSNLCTEIAQNMSAITLTEPQIIKVDE 548 Query: 595 EET----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EE VCNL S++L N+ +L+ I T VR LDNVID+N + I Sbjct: 549 EEIVVNKSKPGDFVVCNLASLSLGNIDVTNK---QELSHIIHTIVRALDNVIDLNYYPIP 605 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 A+ +N +RAIGLG+ G+ L + + S E ++ D E I+ +AI AS LA+E Sbjct: 606 YAEITNRQYRAIGLGVSGYHHMLVKQGLRFESEEHLQFVDTLFETINAYAIQASNVLAKE 665 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G+Y FKGS WD G + G E W +L + V T GMRN+ + Sbjct: 666 KGSYQYFKGSDWDSGAY-FTKRGYQNEC-------------WQKLAQDVHTYGMRNAYLL 711 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A+APT++ + I G S +DP ++N + + E K Sbjct: 712 AVAPTSSTSIIAGTSAGVDP----------------IMNKYFLEEKK------------- 742 Query: 825 KYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879 GS+ I R+ DL ++ A +I W++++A RQ+ IDQAQS+NLY+ +E Sbjct: 743 ----GSM--IARVAPDLNPQTFWLYKNAHQIQQEWIVKAAGIRQRHIDQAQSVNLYITNE 796 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + + + +Y QAW G+KT YY+RS++ Sbjct: 797 FTLRTVLNLYIQAWENGVKTLYYVRSKA 824 >gi|42525857|ref|NP_970955.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema denticola ATCC 35405] gi|41815907|gb|AAS10836.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema denticola ATCC 35405] Length = 845 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 295/926 (31%), Positives = 470/926 (50%), Gaps = 139/926 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG +++P KI AI AF +VE S + II L ++ +L+ K Sbjct: 1 MQIIKRNGETKNYEPEKIEGAIRSAFKSVEN---SPHTDLDTIIPPLVKEIEEDILELTK 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +V +E IQD VE +L++ ++ + ++LYR R+ R Sbjct: 58 NGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRR------------------- 98 Query: 149 MDDGTLIS--FNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMY-DGLSESDLETALIF 204 D +IS F++ ++ ++ E + D S +L+ + + + +SE++ LI Sbjct: 99 -DSRQMISRFFDTIEIQSVLTEIQNDFTSDEYSLNLLAHKFLSFRKENMSETESLAMLIK 157 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCR 258 +S L ++ P++ + AR L+ + + ++ T + K+ +K + E + LY Y C Sbjct: 158 ASVELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGLYGTYIC- 216 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMP 317 E+ +L A+ + ER+ F Y L +L RY +H + + + E P Sbjct: 217 ------------EAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIHTHSNIVLESP 264 Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q F+ +A+ LA+KE K V FY++ S+ +TPTL N+ + QLSSCF+ TV Sbjct: 265 QEMFLGIALHLAMKEKLKRLEWVRRFYDMTSTLKVTMATPTLSNARKPYHQLSSCFIDTV 324 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD L GI+ ++ A ++K+ GG+G + VR +G+ I G G + G+I ++K+ANDTAV Sbjct: 325 PDSLDGIYRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAV 384 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495 AV+Q G R+G+V YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V Sbjct: 385 AVDQLGVRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDD 444 Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 N+ W L P E+ L D YG+E+E Y++ + + R+I L R + Sbjct: 445 INSSWHLMCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKELVRLI 500 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------- 594 L ETG P+ +D N + H G+++ SNLCTEI+ N S Sbjct: 501 LKSAVETGTPFAFNRDHANKTNTNPHKGMIYCSNLCTEISQNMSGIKHKNIEIKTEDGDT 560 Query: 595 --------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + VCNL S+ L N++ + D + S+ AVR LDNVID+N + I A Sbjct: 561 VVATTTIPGDFVVCNLASLVLGNIDVNDEQEIDTIVSS---AVRALDNVIDLNFYPIPYA 617 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + +N +R+IGLG G+ AL I + S E + AD+ E I++ AI AS ++A+E+G Sbjct: 618 QITNSRYRSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKG 677 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 +YS F+GS W G + + R+ + N W L + VK+ GMRN+ +A+ Sbjct: 678 SYSYFEGSDWQTGEY--------FKKRNYVDEN------WKALTEEVKSNGMRNAYLLAV 723 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT++ + I G + +DP ++N + + E K Sbjct: 724 APTSSTSIIAGTTAGVDP----------------IMNKYFLEEKK--------------- 752 Query: 827 HDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881 GS+ + R+ L ++ A I+ W I +A RQ+ IDQAQS+NLY+ +E + Sbjct: 753 --GSL--MPRVAPSLSPETYWLYKNAHHIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFT 808 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRS 907 K+ +Y +AW GLK+ YY+RSRS Sbjct: 809 FSKVLSLYVKAWEEGLKSIYYVRSRS 834 >gi|325478799|gb|EGC81909.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 842 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 289/917 (31%), Positives = 457/917 (49%), Gaps = 124/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKR+G F+ KI RAI KAF +V+ + +R ++E+ + Q Sbjct: 1 MQIIKRDGNKVDFEKIKIERAISKAFFSVDSSITEKDLR------KMSEKIEQTIKQKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 I +E++QD VE +L+ +++ + ++LYR + D + Sbjct: 55 KDHIPTVEEVQDLVELTLIDENYYREVKSFILYR----------AKHNMDRKVLADFSRY 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 ++D +++ ++ + EE + + S + E++ + ++E D+ AL ++ Sbjct: 105 IEDKKVLNIITE----VQEEFDNQRYPIESLLFKFESF--LKPNMTEEDMLKALTRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARFL+ ++ E+ + + +++ L E+G+ Sbjct: 159 LTSKESPDWEIIAARFLMYQIDLEIEKSEERYELFDFKSKIEFL--------TEKGLYGA 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAM 326 + E+ ++ L + Y R+ F Y GL +L RY + + G IE Q FM +AM Sbjct: 211 YILENYSSEEIDELEKYMDYSRNNIFTYSGLDLLRKRYLITNHKGDLIERVQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIPEADKVAFAKRLYDILSNLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+G Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ +PDLF K R NA W +F P Sbjct: 391 AVAVYLDIWHKDIPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKLTRDDINADWHMFDP 450 Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV L D YG+EFE Y D R +S + R ++ ETG P Sbjct: 451 HEVEKKYGKALEDTYGEEFEEFYHKLVADKDISR----RTMSVKDMVRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597 +I +D N +P +H G+++SSNLCTEI N S E+ Sbjct: 507 FIFNRDIVNKANPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566 Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N+ D L T+RT VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGKVDVNDPTD---LEETVRTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPYASPEAVE-IADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + +A E D E I+++AI S+E+A+E+G+YS F+GS Sbjct: 624 GLGTSGYHHMLVKNDIRWQDEKAHEDFVDRVYEDINYYAIKESMEIAKEKGSYSCFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 WD G + + RD ++ R W+ELK+ VK+ G+RN MA+APT + + I Sbjct: 684 WDTGAY--------FDQRD----YKSER--WEELKEEVKSNGLRNGYLMAVAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ + + E K G+I + Sbjct: 730 SGTSAGVDP----------------IMSRYFLEEKK-----------------GAI--VP 754 Query: 836 RIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 R+ L ++ A +ID + A RQ+ IDQAQS+N+Y+ E + +++ +Y Sbjct: 755 RVAPGLTTKTFWLYENAHDIDQNISMRMAGVRQRHIDQAQSVNIYITTEYTMRQILNVYI 814 Query: 891 QAWLMGLKTTYYLRSRS 907 AW G+K+ YY+R +S Sbjct: 815 TAWESGVKSIYYVRGKS 831 >gi|325846379|ref|ZP_08169348.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481563|gb|EGC84603.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 842 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 294/917 (32%), Positives = 456/917 (49%), Gaps = 124/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V KR+G V F+ KI+RAI K+F +V+ + ++ D I E T+ + Sbjct: 1 MEVKKRDGKVVDFEREKINRAIFKSFRSVDSVISEENL---DKISLNIENTIKERYPKDH 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE L+++ ++K + Y+LYR + + D + + Sbjct: 58 ---VVTVEEIQDLVELELIENNYYKEVKSYILYRAKHN----------MDRKVLTDFESY 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +DD +S ++ I EE + + S + E++ +++ L ALI ++ Sbjct: 105 IDDDYTLSI----IKDINEEYDNQRYPIESLYLKFESFTKA--NMTKEALLNALIKAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARF++ + ++ + K ++Q L G+ Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL--------TSVGLYGA 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E+ + DL L LK ER+ F Y GL ++ RY + G IE Q FM ++M Sbjct: 211 YILEAYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A + Y++LS +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIGEKDKVYFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ A +P+LF K N G W +F P Sbjct: 391 AVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPNLFWKECRDNIGGDWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE E Y + EI R I+ L R ++ ETG P Sbjct: 451 HEVLVKYGKSIEDTYGEEFE---EFYHKLVKDKEISK-RVIAIKDLIRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597 ++ +D N +P +H G+++SSNLCTEI N S ET Sbjct: 507 FVFNRDAVNKANPNKHKGIIYSSNLCTEIAQNMSPSETVNEEIKTVDGETVIVNTTKPGD 566 Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N++ + +++ STI VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGNIDVNDKKELEEVVSTI---VRALDNVIDLNYYPTSYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I ++ +A +E D+ E I++ AI AS E+A+E+G+YS F+GS Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLEFVDKVYEDINYFAIKASNEIAKEKGSYSCFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 WD G D W++LKK V G+RN +AIAPT + + I Sbjct: 684 WDNG--------------DYFTQRGYESERWEKLKKDVHENGLRNGYLLAIAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP ++N + + E K G+I + Sbjct: 730 SGTSAGVDP----------------IMNKYFLEEKK-----------------GAI--VP 754 Query: 836 RIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 R+ L ++ A+ ID + + RQ+ IDQAQS+N+Y+ E + +++ IY Sbjct: 755 RVAPGLNTKTFWLYENAYTIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYL 814 Query: 891 QAWLMGLKTTYYLRSRS 907 AW G+K+ YY+R +S Sbjct: 815 TAWEAGVKSLYYVRGKS 831 >gi|227501019|ref|ZP_03931068.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227216792|gb|EEI82190.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 842 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 289/917 (31%), Positives = 460/917 (50%), Gaps = 124/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G SF+ KI +AI KAF +V+ SI +D ++ ++++ + + Sbjct: 1 MEIIKRDGTRASFERVKIEKAIAKAFNSVD------SIISKDDLEKMSKRIEETIREKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 IV +E+IQD VE +L+ +++ + ++LYR + D I Sbjct: 55 KDHIVSVEEIQDLVELTLIDENYYREVKSFILYR----------AKHNMDRKIIGDFSKY 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D +++ ++ I E + + S + E++ + ++E D+ A+ ++ Sbjct: 105 ISDKEVLAIITR----IQTEFDNQRYPIESLLFKFESF--LKANMTEEDMLKAITRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARFL+ ++ E+ +K+ + E G+ + Sbjct: 159 LTSKEAPDWEIIAARFLMYQINLEI--------EKSEERYELFDFKAKIAFLTENGLYGK 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAM 326 + E+ ++ L + + + RD F Y GL ++ RY + + G IE Q FM +AM Sbjct: 211 YILENYSKDEIDELESYMDFTRDDIFTYSGLDLVKKRYLITNHQGDLIEKVQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIPEKDKISFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+G Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ +PDLF + R NA W +F P Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450 Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE Y+ D R +S + R ++ ETG P Sbjct: 451 HEVEKKYGKAIEDTYGEEFEDFYKKLVEDKDISR----RTMSVKDMVRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599 +I +D N +P +H+G+++SSNLCTEI N S E+ Sbjct: 507 FIFNRDAVNRLNPNKHMGMIYSSNLCTEIAQNMSPSESVSTEIIDENGDTIIVNKTRPGD 566 Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N D +L T+RT VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGKVDVN---DASELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + + +A E D E I+++AI S+E+A+E+GAYS F+GS Sbjct: 624 GLGTSGYHHMLVKNDISWQNEQAHGEFVDRVYEDINYYAIKESLEIAKEKGAYSCFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + ++RD ++ R W+EL+ +K G+RN MAIAPT + + I Sbjct: 684 WESGAY--------FDLRD----YKSQR--WEELRGEIKRHGLRNGYLMAIAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ + + E K G+I + Sbjct: 730 SGTSAGVDP----------------IMSRYFLEEKK-----------------GAI--VP 754 Query: 836 RIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 R+ L + A +ID + A RQ+ IDQAQS+N+Y+ E S ++L IY Sbjct: 755 RVAPGLTTKTFWFYENAHDIDQNISMRMAGIRQRHIDQAQSVNIYITTEYSMRQLLNIYI 814 Query: 891 QAWLMGLKTTYYLRSRS 907 AW G+K+ YY+R +S Sbjct: 815 SAWESGVKSIYYVRGKS 831 >gi|319936386|ref|ZP_08010802.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1] gi|319808501|gb|EFW05053.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1] Length = 835 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 286/912 (31%), Positives = 450/912 (49%), Gaps = 129/912 (14%) Query: 33 KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ---DIIKNLTEQTVTRLLQHNKS 89 KRNG +D KI AI+KAF +G +I Q +I+ ++ +Q R Sbjct: 5 KRNGLYQDYDRHKIENAIIKAF-----EGIHETIHQQHLENILNDVEDQIQER------- 52 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + +E IQD+VE +LM+ G+ ++ + Y+LYRE+ +R + +L M+ Sbjct: 53 ---ISVEYIQDKVEEALMRHGYLQVAKAYILYREKHHHLRI----------VIEELMQML 99 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 +D + S +I + + S +++L + +G+++ D L+ +S L Sbjct: 100 NDEGIESL------LIKIQKDYPQTEYSLQLLLVKLKTFYKEGMNQHDAFKMLMKASVEL 153 Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCRYIEEGVKAR 267 I K+ P + K++ARFL + + + + + + ++ L E Y+ YI E + Sbjct: 154 ISKDAPEWEKISARFLTYDIHQRIQEKMETMGIYSFYDKLVYLTKENYYGDYILEHYSHK 213 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E L + +K ER+ F Y GL+++ RY + N +E PQ FM +AM Sbjct: 214 DIQE---------LESYMKDERNEVFTYSGLELIMKRYLIQDRNRDILEKPQEMFMGIAM 264 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+KE EK K A + Y++LS+ +TPT+ N+ Q+SSCF+ TV D L GI+ + Sbjct: 265 HLAMKEKEKVKWAKDIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAGIYKS 324 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L A ++K+ GG+G + VR G+ I G G + GVI +LK+ NDTA AV+Q G R+G Sbjct: 325 LDNFAKVSKHGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLGVRQG 384 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504 A YL+ WH D+ EFL +R N GDDR + HD+ A PDLF K + +A W + P Sbjct: 385 AAAVYLDAWHRDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKSDLDASWYMMCP 444 Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ + L D YG+E+E Y YE D K R +S + R ++ L ETG P Sbjct: 445 HEIHEVKGYYLEDTYGEEWERKY--YECVEDERISK--RVMSVKDIVRLIIKSLVETGTP 500 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597 + +D N +P H G+++ SNLC+EI N SS E Sbjct: 501 FAFNRDHVNRMNPNAHQGMIYCSNLCSEIAQNMSSMEILPHEQIQIDGETIVVEKTKPGD 560 Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N +L I +R LDNVID+N + + AK +N +R + Sbjct: 561 FVVCNLASLTLGHIDVKND---KELQHIIYVVMRALDNVIDLNYYPVPYAKITNQKYRPV 617 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L L + + S E +E D+ E I+++A+ AS LA+E+G Y F GS + Sbjct: 618 GLGTSGYHHMLVKLGMTFESHEHLEFVDQLYEKINYYALEASCALAKEKGKYDYFDGSDF 677 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 D G + W L+ + G+RN +A+APT++ + I Sbjct: 678 DTGAY--------------FEKRHYQSSSWQVLQNDIHEYGLRNGYLLAVAPTSSTSIIA 723 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G + ++DP + +++ T V +L + W Sbjct: 724 GTTAAVDPIMKKFFMEEKKGSMMTRV----APDLNMKTFW-------------------- 759 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 ++ A ID W+IE+A RQ+ IDQ+QS+NLY+ +E + +KL +Y +AW Sbjct: 760 -------LYKNAHHIDQQWVIEAAGIRQRHIDQSQSVNLYITNEFTFRKLLDLYIKAWEK 812 Query: 896 GLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 813 GVKTLYYVRSQS 824 >gi|256545922|ref|ZP_05473277.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256398344|gb|EEU11966.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 842 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 294/919 (31%), Positives = 458/919 (49%), Gaps = 128/919 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V KR+G V F+ KI+RAI K+F +V+ + ++ D I E+T+ + Sbjct: 1 MEVKKRDGQVVDFEREKINRAIFKSFRSVDSVISDENL---DRISLNIEKTIKERYPKDH 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE L+++ ++K + Y+LYR + + D + + Sbjct: 58 ---VVTVEEIQDLVELELIENNYYKEVKSYILYRAKHN----------MDRKVLTDFEAF 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIFSS 206 +DD +S ++ I +E + + S + E++ KNM ++ L ALI ++ Sbjct: 105 IDDEYTLSI----IKDINDEYDNQRYPIESLYLKFESFTKKNM----TKEALLNALIKAA 156 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 L KE P++ + ARF++ + ++ + K ++Q L G+ Sbjct: 157 SELTSKEAPDWEFIAARFMIHLINLKISLSEEKYGIVDFRSKVQYL--------TSAGLY 208 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 + ES + DL L LK +R+ F Y GL ++ RY + G IE Q FM + Sbjct: 209 GSYILESYTNKDLEELGAYLKEDRNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGI 268 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 +M LA+ E ++ A + Y++LS +TPT+ N+ QLSSCF+ TVPD L GI+ Sbjct: 269 SMHLAIGEKDQVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIY 328 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ A ++K+ GG+G + VR G+ I G + GVI ++K+ANDTAVAV+Q G R Sbjct: 329 RSITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIRNVAGGVIRWIKLANDTAVAVDQLGVR 388 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLF 502 +GAV YL+ WH D+ EFL LR N GDDR + HD+ A +PDLF K N G W +F Sbjct: 389 QGAVACYLDIWHKDIPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFWKECRDNIGGDWYMF 448 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P EV + D YG+EFE E Y + + EI R I+ L R ++ ETG Sbjct: 449 DPHEVFVKYGKSIEDTYGEEFE---EFYYKLVNDKEISK-RVIAIKDLIRLLIKSWTETG 504 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------------ 599 P++ +D N +P +H G+++SSNLCTEI N S ET Sbjct: 505 TPFVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIKTVDGETVIVNTTKP 564 Query: 600 -----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNL S+ L N++ + +++ STI VR LDNVID+N + AK +N +R Sbjct: 565 GDFVECNLASLTLGNIDVNDKEELEEVVSTI---VRALDNVIDLNYYPTPYAKVTNKKYR 621 Query: 655 AIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKG 713 AIGLG G+ L I ++ +A ++ D+ E I++ AI AS E+A+E+G+YS F G Sbjct: 622 AIGLGTSGYHHMLVKNDIKWSEEDAHLDFVDKVYEDINYFAIKASNEIAKEKGSYSCFDG 681 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S WD G D W+ LKK V G+RN +A+APT + + Sbjct: 682 SDWDNG--------------DYFKQRGYESERWENLKKDVHENGLRNGYLLAVAPTGSTS 727 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S +DP ++N + + E K G+I Sbjct: 728 IISGTSAGVDP----------------IMNKYFLEEKK-----------------GAI-- 752 Query: 834 IERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + R+ L ++ A+ ID + + RQ+ IDQAQS+N+Y+ E + +++ I Sbjct: 753 VPRVAPGLNTKTFWLYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNI 812 Query: 889 YRQAWLMGLKTTYYLRSRS 907 Y AW G+K+ YY+R +S Sbjct: 813 YLTAWEAGVKSLYYVRGKS 831 >gi|319902177|ref|YP_004161905.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides helcogenes P 36-108] gi|319417208|gb|ADV44319.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides helcogenes P 36-108] Length = 839 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 292/917 (31%), Positives = 450/917 (49%), Gaps = 127/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F++ K +I I+ E V +++ Sbjct: 1 MEITKRNGTREPYDKEKIATAIRKSFISTGQKVTDETIY---ILVREVENFVDGNMENR- 56 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPIAPKL 145 ++E IQD+VE LM+ G + + Y+LYR +R++ R A ++ D + L Sbjct: 57 -----NVERIQDEVERCLMEHGFYTEAKNYILYRWQRTERRKALNNIVNEVGDTTLMDIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIF 204 K + D T + S I+L+E + + Y ++ + TAL+ Sbjct: 112 KSIQQDFTCNEY--------------------SLIMLAEKFSSFYKPEMASKERLTALVK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ L +E P++ + AR L +L +E+ K Q+ + Y E C EG Sbjct: 152 AAIELTTQEAPDWEFIAARILNFQLSKEL------KEQEGVAG-IHSFY-EKLCFLTNEG 203 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322 + + + ++ L ERD Y GL +L RY + + IE Q ++ Sbjct: 204 LYGDYILAAYSPQEIEEAEGFLCSERDKLLNYSGLDLLAKRYLIRTRSHQLIESVQEMYL 263 Query: 323 RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +A+ LA+ E + V+ Y+LLS +TPT+ N+ + QLSSCF+ TVPD L Sbjct: 264 GIALHLAMPENKNRMSWVKKIYDLLSCLEATMATPTMANARKPYHQLSSCFIDTVPDSLE 323 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q Sbjct: 324 GIYRSIDNFAMVSKFGGGMGLYFGKVRASGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGW 499 G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF M + N W Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQVW 443 Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +F P+E+ L D YGKE+E Y + + + R IS + R +L Sbjct: 444 YMFCPNEIMTVKGYCLEDFYGKEWECRYLECVKDSRLSK----RSISIKDIIRLVLRSAV 499 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N S+ E Sbjct: 500 ETGTPFTFNRDTVNYANPNTHKGIIYCSNLCTEIAQNMSAIENISTDIKTKEGDTVVVKT 559 Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 VCNL S++L H D +++ + T VR LDNVID+N + + A+ +NH Sbjct: 560 VRPGDFVVCNLASLSL-GHLPLE--DEEQMRDKVATIVRALDNVIDLNFYPVPFARITNH 616 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R+IGLG+ G+ AL L I + S E + D+ E I++ AI AS +LA+E+G Y+ F Sbjct: 617 RYRSIGLGVSGYHHALALRGIHWESDEHLHFMDKVFERINYAAIQASADLAKEKGKYAYF 676 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 +GS W G + + + W L K+V GMRN+ +AIAPT++ Sbjct: 677 EGSDWQTGAY--------------FSKRGYTSSAWQRLAKKVSEYGMRNAYLLAIAPTSS 722 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I G + DP V+ F + E K AM+ + Sbjct: 723 TGIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA------ 754 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 + D I+ A+ ID W I +A RQ+ +DQAQSLNLY+ +E + +++ +Y Sbjct: 755 ---PGLSDKTYWIYKGAYLIDQQWSIRAAGIRQRHLDQAQSLNLYITNEFTMRQVLRLYL 811 Query: 891 QAWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 812 LAWECGVKTLYYVRSKS 828 >gi|313900055|ref|ZP_07833555.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. HGF2] gi|312955107|gb|EFR36775.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. HGF2] Length = 838 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 297/927 (32%), Positives = 460/927 (49%), Gaps = 148/927 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + F+ KI++AI KAF + G S+ +++II+++T+ +K Sbjct: 1 MKIQKRDGQLQEFEGEKIAQAIRKAFRST-GTLIEESV-LKEIIEDITKAAAA-----DK 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 L V + +QD VE LMQ +K + Y+LYR++R++ R K++ Sbjct: 54 PMLSVEV--VQDLVEEELMQHQFYKEAKNYILYRQKRTESR----------------KVV 95 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---------VLSETYKNMYDGLSESDLE 199 D L+ K E+ S L D+ + +L + + + + + + Sbjct: 96 QD---LVHALQK------EDLYSILADIQQRYPDEGYDLRHLLMKFHSFLKEDMESDERL 146 Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 L+ +S LI KE P + + +RFL L E+ + K +++ L Sbjct: 147 HMLMKASVELISKEAPKWEYIASRFLSYALHEEISARMQKLELPVFSKKLKYLE------ 200 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMP 317 E+G + ++ D ++ L LK ERD+ F Y GL+++ RY + + + E P Sbjct: 201 --EQGYYGDYIRKAYSDAEIDELGAYLKDERDYLFTYSGLELVKKRYLMCSHAHEVLETP 258 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q FM +AM LAL E + A + Y++LS +TPT+ N+ + QLSSCF+ TV Sbjct: 259 QEMFMGIAMHLALPEQNRMYWAKQIYDILSQLQVTMATPTMSNARKPYHQLSSCFIDTVE 318 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I+ ++ A ++KY GG+G + VR G+ I G G + GVI ++K+ NDTA A Sbjct: 319 DTLNNIYKSVDNFAQVSKYGGGMGLYFGKVRANGSDIRGFEGAAGGVIRWIKLVNDTATA 378 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+GAV YL+ WH D+ EFL+LR N GDDR + HD+ A PDLF K + Sbjct: 379 VDQLGVRQGAVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDL 438 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA--LWRK 548 NA W L P E+ L D YG+E+E ER D + K + V L R Sbjct: 439 NATWYLMCPHEIHKIKGYHLEDFYGEEWE------ERYFDCVQDPRVPKRTMVLKDLVRL 492 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------- 591 +L ETG P+ +D N +P H G+++ SNLCTEI N Sbjct: 493 ILKSAVETGTPFTFNRDHVNRMNPNAHAGMIYCSNLCTEIAQNMKALKLEESRIVEIDGE 552 Query: 592 ------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 S + VCNL S++L NN+ ++L+ I VR LDNVID+N + I Sbjct: 553 SVVVNESKPGDFVVCNLASLSLGNIDVNNE---EELSHIIHVIVRALDNVIDLNYYPIPY 609 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 AK +N +R IGLG+ G+ L ++ + S E ++ AD E I+++AI AS LA+E+ Sbjct: 610 AKITNRKYRPIGLGVSGYHHMLVKQNLRFESEEHLQYADTLFEKINYYAIQASTALAREK 669 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G+YS F GS W G + G ++ W L ++V+ GMRN+ MA Sbjct: 670 GSYSMFAGSDWQSGAY-FTKRGYTSDA-------------WSRLFRQVREQGMRNAWLMA 715 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPT++ + I G + +DP ++N + + E K Sbjct: 716 IAPTSSTSIIAGTTAGVDP----------------IMNKYYLEEKK-------------- 745 Query: 826 YHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 GS+ I R+ DL ++ A ID W++ SA RQ+ IDQAQS+NLY+ +E Sbjct: 746 ---GSM--IARVAPDLDARTFWLYKNAHLIDQEWVVRSAGIRQRHIDQAQSVNLYITNEF 800 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + +++ +Y AW G+KT YY+RS+S Sbjct: 801 TLRQVLMLYIHAWEYGVKTIYYVRSKS 827 >gi|319765946|ref|YP_004131447.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus sp. Y412MC52] gi|317110812|gb|ADU93304.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. Y412MC52] Length = 785 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 268/806 (33%), Positives = 406/806 (50%), Gaps = 100/806 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198 K+ I+ D G +SF+ + ++ +A +G ++ L E + ++ LS + Sbjct: 31 KMIIIDDQGKPVSFSREEFASLIGQAAAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 86 Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +TA++ + E EP++ V AR L +L Y++ + ++ + Y +++ Sbjct: 87 LHQTAILEGLSYIDEDEPDWTFVCARLYLRQL--------YREAARQRGYDERERYGDFY 138 Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 + E+GV + LL E ++ + L E+D F Y+GL+ L DRY R Sbjct: 139 SLLVALTEQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERR 198 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 + E+PQ F+ +AM L + E K + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 199 LYELPQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 258 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K Sbjct: 259 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 318 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM Sbjct: 319 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543 ++V Q W LF P EV L D Y +E E Y + + + K+ A+ Sbjct: 379 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSK-EKVPAI 437 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595 + + ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 438 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 497 Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 + VCNL SINL + LA I +R+LDNVID+N + Sbjct: 498 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 552 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E Sbjct: 553 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 612 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G+Y +F GS W G + + L WD LK+ V GMRN M Sbjct: 613 KGSYPAFPGSDWQTGAY-----------FERRGYESHGELDWDRLKQDVARYGMRNGYIM 661 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAP A+ + I G + SIDP + +Y + V V +L ++ W Sbjct: 662 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 709 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K Sbjct: 710 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 750 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909 +L ++ AW GLKTTYY+RS S T Sbjct: 751 ELLDLHLTAWKSGLKTTYYVRSTSGT 776 >gi|325475466|gb|EGC78647.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402] Length = 845 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 296/925 (32%), Positives = 461/925 (49%), Gaps = 137/925 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG +++P KI AI AF +VE S + II L ++ +L+ K Sbjct: 1 MQIIKRNGETKNYEPEKIEGAIRSAFKSVEN---SPHKDLDIIIPPLVKEIEEDILELTK 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR---EERSDVRAAQSHSKSDAPIAPKL 145 S +V +E IQD VE +L++ ++ + ++LYR +R D R S I P L Sbjct: 58 SGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMISRFFDTIEIQPIL 117 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + +D T ++ L ++ + LS +NM SE++ LI + Sbjct: 118 TEIQNDFTSDEYS---LNLLAHK------------FLSFRKENM----SETESLAMLIKA 158 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCRY 259 S L ++ P++ + AR L+ + + ++ T + K+ +K + E + LY Y C Sbjct: 159 SVELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGLYGTYIC-- 216 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318 E+ +L A+ + ER+ F Y L +L RY + + + + E PQ Sbjct: 217 -----------EAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIRTHSNTVLESPQ 265 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +A+ LA+KE V FY++ SS +TPTL N+ + QLSSCF+ TVP Sbjct: 266 EMFLGIALHLAMKEKSNRLEWVRRFYDMTSSLKVTMATPTLSNARKPYHQLSSCFIDTVP 325 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ A ++K+ GG+G + VR +G+ I G G + G+I ++K+ANDTAVA Sbjct: 326 DSLDGIYRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVA 385 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+G+V YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V Sbjct: 386 VDQLGVRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDI 445 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N+ W L P E+ L D YG+E+E Y++ + + R+I L R +L Sbjct: 446 NSSWHLMCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKDLVRLIL 501 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594 ETG P+ +D N +P H G+++ SNLCTEI+ N S Sbjct: 502 KSAVETGTPFAFNRDHANKTNPNPHKGMIYCSNLCTEISQNMSEIKHKTIEIKTENGDTV 561 Query: 595 -------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + VCNL S+ L N++ + D + S+ AVR LDNVID+N + I A+ Sbjct: 562 VATTTIPGDFVVCNLASLVLGNIDVNDEKEIDTIVSS---AVRALDNVIDLNFYPIPYAQ 618 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG G+ AL I + S E + AD+ E I++ AI AS ++A+E+G+ Sbjct: 619 ITNSRYRSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGS 678 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 YS F+ S W G + W L + VK+ GMRN+ +A+A Sbjct: 679 YSYFERSDWQTGEY--------------FKKRNYVDEKWKALAEEVKSNGMRNAYLLAVA 724 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + +DP ++N + + E K Sbjct: 725 PTSSTSIIAGTTAGVDP----------------IMNKYFLEEKK---------------- 752 Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 GS+ + R+ L ++ A I+ W I +A RQ+ IDQAQS+NLY+ +E + Sbjct: 753 -GSL--MPRVAPSLSPETYWLYKNAHNIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTF 809 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 K+ +Y +AW G+K+ YY+RSRS Sbjct: 810 SKVLSLYVKAWEEGVKSIYYVRSRS 834 >gi|261419129|ref|YP_003252811.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp. Y412MC61] gi|261375586|gb|ACX78329.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. Y412MC61] Length = 760 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 268/806 (33%), Positives = 406/806 (50%), Gaps = 100/806 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198 K+ I+ D G +SF+ + ++ +A +G ++ L E + ++ LS + Sbjct: 6 KMIIIDDQGKPVSFSREEFASLIGQAAAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 61 Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +TA++ + E EP++ V AR L +L Y++ + ++ + Y +++ Sbjct: 62 LHQTAILEGLSYIDEDEPDWTFVCARLYLRQL--------YREAARQRGYDERERYGDFY 113 Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 + E+GV + LL E ++ + L E+D F Y+GL+ L DRY R Sbjct: 114 SLLVALTEQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERR 173 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 + E+PQ F+ +AM L + E K + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 174 LYELPQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 233 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K Sbjct: 234 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 293 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM Sbjct: 294 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 353 Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543 ++V Q W LF P EV L D Y +E E Y + + + K+ A+ Sbjct: 354 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSK-EKVPAI 412 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595 + + ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 413 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 472 Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 + VCNL SINL + LA I +R+LDNVID+N + Sbjct: 473 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 527 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E Sbjct: 528 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 587 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G+Y +F GS W G + + L WD LK+ V GMRN M Sbjct: 588 KGSYPAFPGSDWQTGAY-----------FERRGYESHGELDWDRLKQDVARYGMRNGYIM 636 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAP A+ + I G + SIDP + +Y + V V +L ++ W Sbjct: 637 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 684 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K Sbjct: 685 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 725 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909 +L ++ AW GLKTTYY+RS S T Sbjct: 726 ELLDLHLTAWKSGLKTTYYVRSTSGT 751 >gi|258511566|ref|YP_003185000.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478292|gb|ACV58611.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 772 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 260/790 (32%), Positives = 398/790 (50%), Gaps = 95/790 (12%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG + + ++ ++ C + + + ++ + + DG+ S++ I + + Sbjct: 34 DGRIEPLSLDKIFAFLKRGCEAAEGCDPERLAADVWPQLRDGMRTSEIARVAI---QAAV 90 Query: 211 EK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE---G 263 EK EP + V AR LL YK+ + + Y +++ +E G Sbjct: 91 EKTSVAEPGWQFVAARLLL--------FDAYKQASRNRGYR-HLGYGDFYQLIVELERIG 141 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322 + + + ++ LA +K ERD+ F Y+GL+ L DRY + +++ +E+PQ FM Sbjct: 142 RYGTYIRQHYSEDEIAELAAYIKPERDYLFNYVGLKQLLDRYAIRNLDNGIMELPQELFM 201 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 V+M LA+KE +K A FY++LS+ +TPTL N+ QLSSCF+ DDL Sbjct: 202 GVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPTLSNARKPFHQLSSCFIDMPEDDLVS 261 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + A ++K+ GG+G +R G+ I G S GV+P+++ N+TAV+ NQ G Sbjct: 262 IYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNHPGASGGVVPWIRNFNNTAVSCNQLG 321 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R GA YL+ WH D+ +FL LR N GD+R + HD+ IPDLFM+RV + W LF Sbjct: 322 MRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAHDIFPGVCIPDLFMRRVEERGMWYLF 381 Query: 503 SPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P EV L D +G+EFE YE + + +I A+ + ++++ FETG Sbjct: 382 CPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLPRV----EIPAIEIMKRIMQSAFETG 437 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EET---------------A 598 P+I F+D N +P +H G+V+ SNLCTEI N S EET Sbjct: 438 TPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNMSPSRRIEETEEGGIITMKTEAGDFV 497 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL S+NL D D + +R +R +DNVID+N + + +A +N +RA+GL Sbjct: 498 VCNLSSLNL-----GRCRDLDSIREIVRRQIRAMDNVIDLNHYPVPQAAVTNRKYRAVGL 552 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ G+ L IP+ S V+ ADE E+I+F AI AS+ELA+E+G Y F+GS W Sbjct: 553 GVSGYHQYLAEKGIPWESEAHVKHADELFEWINFFAIEASMELAREKGPYPLFEGSDWQT 612 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + D G R WD L++ V G+RN+ +AIAPT++ + I G Sbjct: 613 GRY-FDLRGY---------RTRPGGPDWDGLRREVAEHGVRNAYLVAIAPTSSTSLIAGS 662 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + IDP Y +++ +G VV N L + W Sbjct: 663 TAGIDPVYARFFLEEKKNG---VVPQTAPN-LNDKTFW---------------------- 696 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGL 897 + A ID W IE+ + RQ+ +DQ+QS NLY+ S ++ +Y AW GL Sbjct: 697 -----YYKEAHTIDQRWSIEACAARQRHVDQSQSFNLYITPGISARQFLDLYLLAWKRGL 751 Query: 898 KTTYYLRSRS 907 KT YY+RS+S Sbjct: 752 KTVYYVRSKS 761 >gi|257067185|ref|YP_003153441.1| ribonucleotide-diphosphate reductase subunit alpha [Anaerococcus prevotii DSM 20548] gi|256799065|gb|ACV29720.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 842 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 288/921 (31%), Positives = 459/921 (49%), Gaps = 132/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G F+ KI +AI KAF +V+ + +R I + E+T+ + Sbjct: 1 MEIIKRDGTRADFEREKIEKAIAKAFYSVDSMISEEDLRK---ISSKIEKTIKEKYPADH 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + V +E++QD VE +L+ +++ + ++LYR + D + Sbjct: 58 T---VTVEEVQDLVELTLIDENYYREVKSFILYR----------AKHNMDRKVIGDFSKY 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD----VSSKIVLSETYKNMYDGLSESDLETALIF 204 +DD +++ I+ E + + + S E++ + ++E D+ A+ Sbjct: 105 IDDKNILN--------IITEVQADFDNQRYPIESLFFKFESF--LKANMTEEDMLKAITR 154 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ L KE P++ + ARFL++++ E+ + + +++ L EEG Sbjct: 155 AASELTSKEAPDWEIIAARFLMQEINYEIEKSEERYELFDFKSKIEFL--------TEEG 206 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322 + + E+ ++ L + + RD F Y GL ++ RY + + G +E Q FM Sbjct: 207 LYGSYILENYTGEEIDELEAYMDFSRDKIFTYSGLDLVRKRYLITNHKGDILEKVQEMFM 266 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L G Sbjct: 267 GIAMHLAIPEKDKIGFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKG 326 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G Sbjct: 327 IYRSVTNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLG 386 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWT 500 R+GAV YL+ WH D+ EF+ LR N GDDR + HD+ +PDLF + R NA W Sbjct: 387 VRQGAVAVYLDIWHKDIPEFMGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWH 446 Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +F P EV L D YG+EFE Y+ D R +S + R ++ E Sbjct: 447 MFDPHEVEKKYGRALEDTYGEEFEEFYKKLVADKDISR----RTMSVKDMVRLLIKSWTE 502 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597 TG P++ +D N +P +H G+++SSNLCTEI N S E+ Sbjct: 503 TGTPFVFNRDAVNRLNPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKT 562 Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNL S+ L NN + L T+RT VR LDNVID+N + AK +N Sbjct: 563 KPGDFVECNLASLTLGKVDVNNSAE---LEETVRTVVRALDNVIDLNYYPTPYAKVTNKK 619 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSF 711 +RAIGLG G+ L I + + EA E D E I+F+AI S+E+A+E+GAYS F Sbjct: 620 YRAIGLGTSGYHHMLVKNDISWQNEEAHGEFVDRVYEDINFYAIKESMEIAKEKGAYSCF 679 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 +GS W+ G + ++RD ++ R W++L+ VK G+RN MAIAPT + Sbjct: 680 EGSDWETGAY--------FDLRD----YKSER--WEKLRAEVKENGLRNGYLMAIAPTGS 725 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G S +DP +++ + + E K G+I Sbjct: 726 TSIISGTSAGVDP----------------IMSRYFLEEKK-----------------GAI 752 Query: 832 GNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 + R+ L ++ A +ID + A RQK IDQAQS+N+Y+ E + ++L Sbjct: 753 --VPRVAPGLTTKTFWLYENAHDIDQNISMRMAGVRQKHIDQAQSVNIYITTEYTMRQLL 810 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 IY AW G+K+ YY+R +S Sbjct: 811 NIYITAWEAGVKSIYYVRGKS 831 >gi|225849392|ref|YP_002729556.1| ribonucleoside-diphosphate reductase subunit alpha (ribonucleotide reductase) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643585|gb|ACN98635.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Sulfurihydrogenibium azorense Az-Fu1] Length = 1222 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/550 (39%), Positives = 319/550 (58%), Gaps = 40/550 (7%) Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 +C++ + D L I +E A LAKY+GG+G D T +R G+ IH N KS G+IPF+K Sbjct: 644 NCYVNVIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGIIPFIK 703 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + A+ QGG+R+ + YL+ WH+DVE FLDLR+ TG+ RT +NTA W+PD Sbjct: 704 IFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDEL 763 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+R+ + LF P E L +G+EF+ YE+ +A++GE+K+++KI + ++K Sbjct: 764 MRRIKEGEPIYLFDPAECPKLVTAWGEEFKKEYESCIEKAEKGELKLWKKIDSRDFYKKY 823 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 L L +TGHPW+TFKD N ++P V++SSNLCTEI++ +S E TAVC L S+NL Sbjct: 824 LFKLAKTGHPWLTFKDRHNEKNPCPQYSVINSSNLCTEISIPNSPESTAVCTLASVNLAR 883 Query: 610 HFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 H ++ FD+DKL T+ T V LDN++D N + E+++K+ R IG+G+MGF AL Sbjct: 884 HVKEDKSDFDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMDLRPIGIGVMGFHEAL 943 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L IPY S +AVE A + +F+ + S ELA+ERGA+ + Sbjct: 944 IKLGIPYDSDKAVETARKIAKFMREVTYAKSEELAKERGAFPHYY--------------- 988 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 E N R RN+ +A+APTA+I+ I G S SID + Sbjct: 989 -------EANYNYPPR---------------RNAVLLAVAPTASISIIAGTSSSIDNYFS 1026 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHA 846 N++ + +SG F V+N L+ EL+++ LW E + +K H GSI IE + + K ++ Sbjct: 1027 NIFSRDTLSGKFIVINKPLMKELEEKGLWSEELAEKIKAHQGSIQYIEELDGKIDKSLYK 1086 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TA+E+ P I+ A+ Q++IDQA S +LY++E K++ IY AW GLK+TYY Sbjct: 1087 TAYEVSPYRQIDIAAAFQEYIDQAVSKSLYIEEDLRDKMEDIYMYAWEKGLKSTYYCFID 1146 Query: 907 SATSVEKSTL 916 EK TL Sbjct: 1147 KTVKGEKYTL 1156 Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 F YI V+ +LL ++ FD+ L + Y RD+ +Y GL L DRY + + I Sbjct: 101 FKDYINYAVEEKLLKPELLQFDIDRLEKSIDYSRDYNLDYFGLSTLKDRYLMKDRDFETI 160 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FFMRVAMG+ E E ++ YN LS+ ++ STPTLFNSGT Q SSCF Sbjct: 161 EKPQWFFMRVAMGIGNTEDE----IIKIYNKLSNLEYLHSTPTLFNSGTLTNQYSSCFPA 216 Query: 375 TVP 377 P Sbjct: 217 GTP 219 >gi|56419446|ref|YP_146764.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus kaustophilus HTA426] gi|56379288|dbj|BAD75196.1| ribonucleoside-diphosphate reductase alpha subunit [Geobacillus kaustophilus HTA426] Length = 785 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 267/806 (33%), Positives = 406/806 (50%), Gaps = 100/806 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198 K+ I+ D G +SF+ + ++ +A +G ++ L E + ++ LS + Sbjct: 31 KMIIIDDQGKPVSFSREEFASLIGQAVAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 86 Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +TA++ + E EP++ V AR L++L Y++ + ++ + Y +++ Sbjct: 87 LHQTAILEGLSYIDEDEPDWTFVCARLYLQQL--------YREAARQRGYDARERYGDFY 138 Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 + E+GV + LL E ++ + L +D F Y+GL+ L DRY R Sbjct: 139 SLIVSLTEQGVYSPLLLERYTKEEIETAGSFLDPGKDLLFTYIGLRTLADRYLARDYERR 198 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 + E+PQ F+ +AM L + E K + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 199 LYELPQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 258 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K Sbjct: 259 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 318 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM Sbjct: 319 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543 ++V Q W LF P EV L D Y +E E Y + + + K+ A+ Sbjct: 379 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSK-EKVPAI 437 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595 + + ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 438 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 497 Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 + VCNL SINL + LA I +R+LDNVID+N + Sbjct: 498 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 552 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E Sbjct: 553 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 612 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G+Y +F GS W G + + L WD LK+ V GMRN M Sbjct: 613 KGSYPAFPGSDWQTGAY-----------FERRGYQSHGELDWDRLKQDVARYGMRNGYIM 661 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAP A+ + I G + SIDP + +Y + V V +L ++ W Sbjct: 662 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 709 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K Sbjct: 710 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 750 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909 +L ++ AW GLKTTYY+RS S T Sbjct: 751 ELLDLHLTAWKSGLKTTYYVRSTSGT 776 >gi|265756567|ref|ZP_06090773.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_1_33FAA] gi|263233755|gb|EEZ19370.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_1_33FAA] Length = 839 Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust. Identities = 305/927 (32%), Positives = 462/927 (49%), Gaps = 147/927 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + K +T++ V ++ ++ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44 Query: 89 SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138 L +H +E IQD+VE SLM+ G + + Y+LYR +R++ R A S D Sbjct: 45 VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197 I+ LK + D F+ K + + L+E + + ++ + Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144 Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY- 255 AL+ ++ L +E P++ + AR L +L +++ A E ++ Y Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFRLTKKL----------AEQAEAAGIFSFYD 194 Query: 256 FCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313 RY+ +EG+ + S ++ A + ERD F Y GL +L RY + Sbjct: 195 KLRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEP 254 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE Q ++ +A+ LA+ E + + V+ FY++LS +TPTL N+ + QLSSCF Sbjct: 255 IESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCF 314 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + TVPD L GI+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ N Sbjct: 315 IDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVN 374 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Sbjct: 375 DTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRM 434 Query: 493 VTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q N W LF P+E+ L D YGKE+E Y + + + R +S + Sbjct: 435 AKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDI 490 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597 R +L ETG P+ +D N +P H G+++ SNLCTEI N SS ET Sbjct: 491 VRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTE 550 Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 VCNL S++ L H D ++ + T VR LDNVI++N + Sbjct: 551 DGDTVVVKTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATLVRALDNVIELNFYP 607 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I A+ +NH +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA Sbjct: 608 IPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELA 667 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761 +E+G+Y F+GS W GV+ I R P W L +V T GMRN+ Sbjct: 668 KEKGSYHYFEGSDWQTGVYFI---------------KRGYNSPEWKALAVKVSTQGMRNA 712 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPT++ + I G + DP V+ F + E K AM+ Sbjct: 713 YLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AML 750 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + + D I+ +A+ ID W I +A RQ IDQAQSLNLY+ +E Sbjct: 751 PRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEF 801 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + +++ +Y AW G+KT YY+RS+S Sbjct: 802 TLRQVLNLYLLAWECGVKTIYYVRSKS 828 >gi|257456710|ref|ZP_05621900.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii ATCC 35580] gi|257445903|gb|EEV20956.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii ATCC 35580] Length = 849 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 292/924 (31%), Positives = 458/924 (49%), Gaps = 131/924 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLLQHN 87 + +IKRNG +++ KI+ A+ AF +V G A ++ +++ +T + + + + Sbjct: 1 MDIIKRNGEREAYNAEKITLAMQAAFNSVTGAEAQQKNSDTGALLRQMTAEIEADIYELS 60 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPK 144 K+ V +E IQD VE +L++ + + ++LYR E++ D R A + + I P Sbjct: 61 KNGSPVQVETIQDLVEKTLIEHNRYAEVKNFILYRVEQTKKRDARRAIAAHFTLIDILPV 120 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALI 203 L + D D S +L +++ ++E++L T LI Sbjct: 121 LTRIQQDFP--------------------DDQYSLTLLFHKFESFRKPDMTEAELLTLLI 160 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCRYIE 261 ++ L +E P + + ARFL+ ++ T + K+ ++ + ++ L + + YI Sbjct: 161 KAAVELTAQEAPRWEFIAARFLMLDFSGKLKTELEKRNIRSFYDKLTYLEEKGLYGAYIR 220 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAF 320 G L ++ D NDL F Y GL +L RY + G +E PQ Sbjct: 221 AGYSKEELEQAYAYIDNS--KNDL-------FTYSGLDLLLRRYVISTRGHIPLETPQEM 271 Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+ +A+ LAL E + V FY +LSS +TPTL N+ + QLSSCF+ TVPD Sbjct: 272 FLGIALHLALHEQKDRMEWVRRFYLMLSSLQVTMATPTLSNARKPYHQLSSCFIDTVPDS 331 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ ++ A ++K+ GG+G + VR +GA I G G + GVI ++K+ANDTAVAV+ Sbjct: 332 LDGIYRSIDNFAKISKFGGGMGLYFGKVRAVGAPIRGFQGAAGGVIRWIKLANDTAVAVD 391 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG- 498 Q G R+G+V YL+ WH DV EFL LR N GDDR + HD+ A PDLF + V ++ G Sbjct: 392 QLGVRQGSVAVYLDVWHKDVPEFLQLRTNNGDDRMKAHDVFPAVCCPDLFWRTVDEDIGA 451 Query: 499 -WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W L P E+ L D YG+E+E + Y+ + I R+I L R +L Sbjct: 452 SWYLMCPHEILTVKGYALEDFYGEEWE---KRYKDCINDNRISK-REIPVKELVRLILKS 507 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------- 593 ETG P+I +D N +P H G+++SSNLCTEI N S Sbjct: 508 AVETGTPFIFNRDHANRANPNGHKGMIYSSNLCTEIAQNMSPIHAVNTEIQTQDGETVVV 567 Query: 594 ----SEETAVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL S+ L N D D +L I AVR LDNVID+N + + AK Sbjct: 568 TVTKPGDFVVCNLASLVL----GNIDTDNDAELEGIIEAAVRALDNVIDLNFYPVPYAKI 623 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG+ G+ L HI + S +++ADE E I+++A+ AS+++AQE+GAY Sbjct: 624 TNEQYRAIGLGVSGYHHLLAKKHIAWESDAHLKLADELFEKINYYAVQASMQIAQEKGAY 683 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+ S W G + R W+ L++ V G+RN +A+AP Sbjct: 684 RLFEDSDWQTGAY--------------FEKRRYQSERWNALREEVARHGIRNGYLLAVAP 729 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + + G + IDP ++ + + E K Sbjct: 730 TSSTSIVAGTTAGIDP----------------IMKRYFLEEKK----------------- 756 Query: 829 GSIGNIERIPD----DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 GS+ + R+ D ++ A ID +W I + RQ+ IDQ QS+N Y+ ++ S + Sbjct: 757 GSL--VPRVAPALSLDTYWLYKNAHTIDQLWSIRACGLRQRHIDQGQSMNFYITNDYSFR 814 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ +Y +AW G+K+ YY+RSRS Sbjct: 815 QVLNLYVEAWKNGIKSVYYVRSRS 838 >gi|227485719|ref|ZP_03916035.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] gi|227236274|gb|EEI86289.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] Length = 842 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 284/915 (31%), Positives = 454/915 (49%), Gaps = 120/915 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G F+ KI RAI KAF +V+ S + ++ + ++ V + + Sbjct: 1 MKIIKRDGSKVDFELEKIKRAIFKAFKSVD------STITDEKLEYIAQKIVGTIEEKFP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E++QD VE SL+ +++ + ++LYR + D + Sbjct: 55 VDHVVTVEEVQDLVELSLIDENYYREVKSFILYR----------AKHNMDRKVISDFTKY 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D L+ SK + E S + S E++ +++ ++ A+I ++ Sbjct: 105 VSDKDLMEIISK----VQREFDSQRYPIESLYFKFESFTK--PEMNDKEVLDAVIRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EEGVKA 266 L KE P++ + ARFL K+ E+ Q+ +++ + R++ E+G+ Sbjct: 159 LTSKEAPDWEIIAARFLAYKINLEI-------RQEEERYDIYDFKSK--IRFLTEKGLYG 209 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA 325 + E+ ++ L L Y+RD F Y GL ++ RY + +G +E Q FM +A Sbjct: 210 SYILENYSSAEIDELEKHLDYDRDDIFTYSGLDLIRKRYLITSYDGRLLEKVQEMFMGIA 269 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ Sbjct: 270 MHLAIPEEDKVSFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIETVPDTLKGIYR 329 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+ Sbjct: 330 SITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQ 389 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503 GAV YL+ WH D+ EFL LR N GDDR + HD+ +PDLF K+V N W +F Sbjct: 390 GAVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKQVKNNMEGDWYMFD 449 Query: 504 PDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKMLTMLFETG 557 P EV + D YG+EFE E Y++ D EI R+I + + R ++ ETG Sbjct: 450 PHEVEKKYGRAIEDTYGEEFE---EFYKKLVDDKEIS--RRIMPIKDMVRLLIKSWSETG 504 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------------ 599 P+I +D N +P +H G+++SSNLCTEI N S ET Sbjct: 505 TPFIFNRDLVNKYNPNKHKGIIYSSNLCTEIAQNMSPSETVSTEIVTEDGDVVIVNKTKP 564 Query: 600 -----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNL S+ L NN +L T+RT VR LDNVID+N + A+ +N +R Sbjct: 565 GDFVECNLASLTLGKLDVNNP---KELEETVRTVVRALDNVIDLNYYPTPYAEVTNKKYR 621 Query: 655 AIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKG 713 AIGLG G+ L I ++ +A E+ D E I+++AI SVE+A+++G+Y F+G Sbjct: 622 AIGLGTSGYHHMLVKNDIRWSDEKAHAELVDRVYEDINYYAIKESVEIAKDKGSYKVFEG 681 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G + D RD + W++L + VK G+RN MAIAPT + + Sbjct: 682 SDWQSGAYFTD--------RDYTSER------WEKLAEDVKKYGLRNGYLMAIAPTGSTS 727 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S +DP +++ + + L + W Sbjct: 728 IISGTSAGVDPIMSRYFLEEKKGA----IVPRVAPGLTTKTFW----------------- 766 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 ++ A +ID + A RQ+ +DQAQS+N+Y+ E + +++ +Y A Sbjct: 767 ----------LYENAHDIDQNISMRMAGIRQRHLDQAQSVNIYITTEYTMRQILNVYLTA 816 Query: 893 WLMGLKTTYYLRSRS 907 W G+K+ YY+R +S Sbjct: 817 WESGVKSIYYVRGKS 831 >gi|212693365|ref|ZP_03301493.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855] gi|212664009|gb|EEB24583.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855] Length = 839 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 303/927 (32%), Positives = 461/927 (49%), Gaps = 147/927 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + K +T++ V ++ ++ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44 Query: 89 SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138 L +H +E IQD+VE SLM+ G + + Y+LYR +R++ R A S D Sbjct: 45 VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197 I+ LK + D F+ K + + L+E + + ++ + Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144 Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY- 255 AL+ ++ L +E P++ + AR L +L +++ A E ++ Y Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFRLTKKL----------AEQAEAAGIFSFYD 194 Query: 256 FCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313 RY+ +EG+ + S ++ A + ERD F Y GL +L RY + Sbjct: 195 KLRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEP 254 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE Q ++ +A+ LA+ E + + V+ FY++LS +TPTL N+ + QLSSCF Sbjct: 255 IESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCF 314 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + TVPD L GI+ +L AM++K+ GG+G + +R G +I G G + GVI ++K+ N Sbjct: 315 IDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKIRAAGGNIRGFKGVAGGVIRWMKLVN 374 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Sbjct: 375 DTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRM 434 Query: 493 VTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q N W LF P+E+ L D YGKE+E Y + + + R +S + Sbjct: 435 AKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDI 490 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597 R +L ETG P+ +D N +P H G+++ SNLCTEI N SS ET Sbjct: 491 VRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTE 550 Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 VCNL S++ L H D ++ + T VR LDNVI++N + Sbjct: 551 DGDTVVVKTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNFYP 607 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I A+ +NH +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA Sbjct: 608 IPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELA 667 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761 +E+G+Y F+GS W G + I R P W L +V T GMRN+ Sbjct: 668 KEKGSYHYFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMRNA 712 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPT++ + I G + DP V+ F + E K AM+ Sbjct: 713 YLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AML 750 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + + D I+ +A+ ID W I +A RQ IDQAQSLNLY+ +E Sbjct: 751 PRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEF 801 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + +++ +Y AW G+KT YY+RS+S Sbjct: 802 TLRQVLNLYLLAWECGVKTIYYVRSKS 828 >gi|168184458|ref|ZP_02619122.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum Bf] gi|237796250|ref|YP_002863802.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum Ba4 str. 657] gi|182672445|gb|EDT84406.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum Bf] gi|229261891|gb|ACQ52924.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum Ba4 str. 657] Length = 763 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 266/814 (32%), Positives = 413/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG S ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A +FY+LLS +TPTL N+G Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S + Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQL 469 Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 CNL SINL ++ ++ + I +R+LDN Sbjct: 470 LEEEIIDENGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKISWESDEHIKVADEIYEEIAYIA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FKGS W+ G + + G +E W +L+ +K Sbjct: 584 IESSMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +NE + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R+RS Sbjct: 719 LYITPEIKAKEILNMYMESWRQGVKTIYYVRNRS 752 >gi|229827461|ref|ZP_04453530.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC 49176] gi|229788399|gb|EEP24513.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC 49176] Length = 763 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 244/662 (36%), Positives = 350/662 (52%), Gaps = 90/662 (13%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 LA +K ERDF F Y G+++L DRY +H +NG +E+PQ FM +AM LA E +K A Sbjct: 146 LAEYIKPERDFLFNYEGVKLLADRYLVHGVNGEVMELPQERFMAIAMHLASVEEDKVYYA 205 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 FY+LLS +TPTL N+GT QLSSCF++TV D+L+ I+ + + ++K+ G Sbjct: 206 KAFYDLLSKLKMTVATPTLANAGTTFNQLSSCFISTVSDNLWSIYDVNSKFSKVSKHGGA 265 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 LG VR LG+ I G N S GVIP++++ NDTAVAV+Q G+RKG L+ WH D+ Sbjct: 266 LGIYLGKVRSLGSDIRGYNNASGGVIPWVRLYNDTAVAVDQLGRRKGGASITLDIWHKDL 325 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLY 514 EF+DLR N GDDRR+ HD+ A IPD+FM+R+ ++LF P EV L D Y Sbjct: 326 YEFIDLRTNNGDDRRKAHDIFPAISIPDIFMERLINRQEFSLFDPHEVEKLMGFSLEDYY 385 Query: 515 GK-----EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 K EF Y+ E +I V A+ + +K++ ETG P+I F+D N Sbjct: 386 DKDEKHKEFSERYKLCENDNRLTKITV----PALDIMKKIMKSAVETGTPFIFFRDTVNR 441 Query: 570 RSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLGSIN 606 +P H G+++ SNLC EI N S S + CNL S+N Sbjct: 442 ANPNSHAGMIYGSNLCHEIAQNMSETKYVSEEIITENGETKIVTTVKSGDMVTCNLNSVN 501 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 L ++L + +R+LDNVI +N + AK ++ +RAIGLG+ G+ Sbjct: 502 L------GNVTLEELKENVPLQIRMLDNVITLNMFPVADAKVTSLKYRAIGLGVSGYHHY 555 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L I + + + +E AD E I+++AI AS+ELA+E+GAY+ F+GS W G + D Sbjct: 556 LAKNAIAWENEKHIEEADRLFEEIAYNAIKASMELAKEKGAYAEFEGSKWQTGEY-FDER 614 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 G ++E W ELKK V G+RN MA+APT + +NI G + IDP + Sbjct: 615 GYVSE-------------RWQELKKDVMKYGLRNGYLMAVAPTGSTSNIAGTTAGIDPIF 661 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + +V+ G FT + EL W + Sbjct: 662 KKFFVEEK-KGSFTPKTA---PELNDETFW---------------------------YYK 690 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A I+ +W I + + RQ+ IDQAQS NLY+ E K + +Y +A+ G+KT YY+R+ Sbjct: 691 EAHYINQLWSIRACAARQRHIDQAQSFNLYITPEVKAKDILDMYVEAYKAGIKTIYYVRN 750 Query: 906 RS 907 RS Sbjct: 751 RS 752 >gi|51891460|ref|YP_074151.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|51855149|dbj|BAD39307.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 782 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 278/820 (33%), Positives = 414/820 (50%), Gaps = 103/820 (12%) Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187 VR AQ P +L +++D+ ++ L +V AC + + ++E Sbjct: 23 VRPAQ-------PYQGELNMLLDE--RVNVPEIDLTELVVSACRSIYPERASEFIAELRP 73 Query: 188 NMY---DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV-YKKPQKA 243 ++ D + DL A + + +T +E EP++ V AR L+KL E Y +P Sbjct: 74 LLHATTDRSQQMDL-AARLAAEKTSVE-EPDWQYVAARLYLQKLYGEAARNRGYHQPGYG 131 Query: 244 THHEMQCLYPEYFCRYIEEG--VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 +E L + E G V + E+ + ++ L ++ ERD F Y+GL L Sbjct: 132 DFYE---LVRQLHAMGDEAGNRVYGAYMIEAYSEEEIRELGRYIRPERDELFTYVGLLHL 188 Query: 302 YDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 DRY + +G +E+PQ +M +AM LA E+++ A FY++LS +TPT N Sbjct: 189 ADRYLIKGFHGEILELPQERYMHIAMHLASVESDRVTWAKRFYDVLSRQEMTVATPTFRN 248 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 + T PQLSSCF+ TV D L I+ Q A ++K+ GG+G +R G+ I G G Sbjct: 249 AATPLPQLSSCFIDTVDDSLQSIYDTNQSFAQVSKHGGGMGIYIGKLRARGSAIRGRKGA 308 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + GVIP+++ NDTAVAV+Q G RKGAV +L+ WH ++ EFL L+ N GDDR R HD+ Sbjct: 309 AAGVIPWVRNYNDTAVAVDQLGARKGAVSIWLDVWHKEIFEFLALKLNNGDDRMRAHDIF 368 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYE--NYERQADRGE 533 +PD FM+ V Q+A W LF P EV L D +G+E+E Y AD+ + Sbjct: 369 PGVCVPDAFMRAVEQDADWHLFCPHEVRTEMGFSLEDAWGEEWERRYRLCVEAAHADKLD 428 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 V R A + + ML +ETG P++ F+D N +P +H G+V+ SNLCTEI N S Sbjct: 429 ATVVR---ARQVAKAMLKSQYETGGPFLFFRDTVNRLNPNKHAGMVYCSNLCTEIAQNQS 485 Query: 594 S----EET---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E+T VCNL SINL + +K+A + A+R+LDN Sbjct: 486 PTRLIEKTDDGEVITYRWQPGDFVVCNLASINL-----SKVHTEEKIAEVVPLAIRMLDN 540 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID+N + + +AK +N +RAIGLG+ G+ L L I + S + + ADE E ++++A Sbjct: 541 VIDLNFYPVPQAKITNKKYRAIGLGVHGYHQMLAELGIHWESEDHLRKADEVFELLNYYA 600 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + S+ELA E+G Y KGS W+ G + A+ W L+++ Sbjct: 601 VKTSIELAAEKGCYPLCKGSDWETGEY--------------FALRGYESDRWQALRRQAA 646 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 +G+RN+ +AIAPT++ + +CG + S+DP Y +Y NE K+ Sbjct: 647 EVGLRNAYLLAIAPTSSTSLLCGTTASVDPIYDRVY-----------------NEGKKDQ 689 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + A + + A +ID W I +A RQ+ IDQ+QS N Sbjct: 690 VIPLAAPG--------------LSPKTYLYYKPAHQIDQTWSIRAAGVRQRHIDQSQSFN 735 Query: 875 LYLDEPSGKKLDF--IYRQAWLMGLKTTYYLRSRSATSVE 912 LY+ P K DF +Y QAW GLKT YY+RSRS E Sbjct: 736 LYI-RPDIKGRDFLNLYMQAWKNGLKTVYYVRSRSLEVTE 774 >gi|260912587|ref|ZP_05919118.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633299|gb|EEX51458.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 839 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 293/921 (31%), Positives = 442/921 (47%), Gaps = 139/921 (15%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 + KRNG + FD KI+ AI K+F++ IR D+ + + +T + N Sbjct: 3 ITKRNGSMAPFDREKIATAIKKSFISTGRTIVEDEIR--DVAIAVEQVIITNPAKQN--- 57 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA---AQSHSKSDAPIAPKLKI 147 +E IQD+VE SLMQ G + + Y+L+R +R++ R +++ IAP LK Sbjct: 58 ----VECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNKIANTLQQPEIAPALK- 112 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFSS 206 G F + L +++ L+E + ++ D +ALI ++ Sbjct: 113 ----GIAADFEPE------------LYPIAA---LAEKFMGFVKADMNGRDKLSALIKAA 153 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRR-----EVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 L E PN+ + AR L +L+R E + QK H Q LY Y Sbjct: 154 VELTSAEAPNWEFIAARLLSYRLQRDLEAFEQAEDIQSFAQKVRHLASQNLYGTY----- 208 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319 + E+ D +L A+ + ER+ Y GL +L RY + + +E Q Sbjct: 209 --------IAEAYTDGELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQE 260 Query: 320 FFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ +A+ LA+ E E V +FY++LS +TPTL N+ QLSSCF+ TVPD Sbjct: 261 MFLGIALHLAMNEGENRLHWVRKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPD 320 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ A ++K+ GG+G + VR G I G G + GV+ ++K+ NDTAVAV Sbjct: 321 SLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAV 380 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496 +Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V Q N Sbjct: 381 DQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMVQQDLN 440 Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 W +F P+EV L D YG E+E Y E AD+ + R ++ + R +L Sbjct: 441 QEWHMFCPNEVLTTRGYSLEDFYGSEWEEKYR--ECVADKRLSR--RTMTLKDVIRLVLR 496 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------- 598 ETG P+ +D N +P H G+++ SNLCTEI N E Sbjct: 497 SAVETGTPFTFNRDIVNRANPNAHNGIIYCSNLCTEIAQNMQPIEEVSNEVVTKDGDTVV 556 Query: 599 ----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S++L N+ L + T VR LDNVID+N + + A+ Sbjct: 557 VRTVKPGDFVVCNLASLSLGNLPLENE---AYLNDVVATVVRALDNVIDLNFYPVPYAQI 613 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +NH +R+IGLG+ G+ AL L I + S + ++ D+ E I+ AI AS LA+E+G+Y Sbjct: 614 TNHRYRSIGLGVSGYHHALALRGINWESEDHLQFVDQVFERINRAAIEASSALAKEKGSY 673 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIA 767 + F+GS W G + R P W + +RVK GMRN+ +AIA Sbjct: 674 ACFEGSDWQTGAY---------------FEKRNYDSPQWQQTAQRVKVQGMRNAYLLAIA 718 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + + + +DP Q +++ V L R W Sbjct: 719 PTSSTSIVAATTAGLDPVMQRFFLEEKKGAMLPRV----APALSDRTFW----------- 763 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 ++ A++ + W + +A RQ+ IDQAQS+NLY+ + + ++L Sbjct: 764 ----------------LYKGAYQTNQAWSMRAAGIRQRHIDQAQSVNLYITNNYTMRQLL 807 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 808 DLYLLAWQSGVKTIYYVRSKS 828 >gi|237710422|ref|ZP_04540903.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 9_1_42FAA] gi|229455144|gb|EEO60865.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 9_1_42FAA] Length = 839 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 306/929 (32%), Positives = 461/929 (49%), Gaps = 151/929 (16%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + K +T++ V ++ ++ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44 Query: 89 SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138 L +H +E IQD+VE SLM+ G + + Y+LYR +R++ R A S D Sbjct: 45 VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197 I+ LK + D F+ K + + L+E + + ++ + Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144 Query: 198 LETALIFSSRTLIEKE-PNYAKVTAR---FLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 AL+ ++ L +E P++ + AR FLL K K ++A + Y Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFLLTK----------KLTEQAEAAGIFSFYD 194 Query: 254 EYFCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + RY+ +EG+ + S ++ A + ERD F Y GL +L RY + Sbjct: 195 K--LRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSH 252 Query: 313 R-IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 IE Q ++ +A+ LA+ E + + V+ FY++LS +TPTL N+ + QLSS Sbjct: 253 EPIESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSS 312 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TVPD L GI+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ Sbjct: 313 CFIDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKL 372 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF Sbjct: 373 VNDTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFW 432 Query: 491 KRVTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 + Q N W LF P+E+ L D YGKE+E Y + + + R +S Sbjct: 433 RMAKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIK 488 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------ 597 + R +L ETG P+ +D N +P H G+++ SNLCTEI N SS ET Sbjct: 489 DIVRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEIC 548 Query: 598 -----------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 VCNL S++ L H D ++ + T VR LDNVI++N Sbjct: 549 TEDGDTVVVKTIRSGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNF 605 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + I A+ +NH +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS E Sbjct: 606 YPIPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSE 665 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMR 759 LA+E+G+Y F+GS W G + I R P W L +V T GMR Sbjct: 666 LAKEKGSYHYFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMR 710 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N+ +AIAPT++ + I G + DP V+ F + E K A Sbjct: 711 NAYLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------A 748 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 M+ + + D I+ +A+ ID W I +A RQ IDQAQSLNLY+ + Sbjct: 749 MLPRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITN 799 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 E + +++ +Y AW G+KT YY+RS+S Sbjct: 800 EFTLRQVLNLYLLAWECGVKTVYYVRSKS 828 >gi|297530898|ref|YP_003672173.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus sp. C56-T3] gi|297254150|gb|ADI27596.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. C56-T3] Length = 785 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 267/806 (33%), Positives = 404/806 (50%), Gaps = 100/806 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198 K+ I+ D G +SF+ + ++ +A +G ++ L E + ++ LS + Sbjct: 31 KMIIIDDQGKPVSFSREEFASLIGQAAAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 86 Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +TA++ + E EP++ V AR L +L Y++ + ++ + Y +++ Sbjct: 87 LHQTAILEGLSYIDEDEPDWTFVCARLYLRQL--------YREAARQRGYDERERYGDFY 138 Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 + E+GV + L E ++ + L E+D F Y+GL+ L DRY R Sbjct: 139 SLLVALTEQGVYSPFLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERR 198 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 + E+PQ F+ +AM L E K + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 199 LYELPQERFLVIAMTLMANEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 258 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K Sbjct: 259 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 318 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM Sbjct: 319 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543 ++V Q W LF P EV L D Y +E E Y + + + K+ A+ Sbjct: 379 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSK-EKVPAI 437 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595 + + ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 438 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 497 Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 + VCNL SINL + LA I +R+LDNVID+N + Sbjct: 498 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 552 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E Sbjct: 553 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 612 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G+Y +F GS W G + + L WD LK+ V GMRN M Sbjct: 613 KGSYPAFPGSDWQTGAY-----------FERRGYESHGELDWDRLKQDVARYGMRNGYIM 661 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAP A+ + I G + SIDP + +Y + V V +L ++ W Sbjct: 662 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 709 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K Sbjct: 710 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 750 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909 +L ++ AW GLKTTYY+RS S T Sbjct: 751 ELLDLHLTAWKSGLKTTYYVRSTSGT 776 >gi|237726930|ref|ZP_04557411.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. D4] gi|229433786|gb|EEO43863.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides dorei 5_1_36/D4] Length = 839 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 303/927 (32%), Positives = 461/927 (49%), Gaps = 147/927 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + K +T++ V ++ ++ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44 Query: 89 SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138 L +H +E IQD+VE SLM+ G + + Y+LYR +R++ R A S D Sbjct: 45 VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197 I+ LK + D F+ K + + L+E + + ++ + Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144 Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY- 255 AL+ ++ L +E P++ + AR L +L +++ A E ++ Y Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFRLTKKL----------AEQAEAAGIFSFYD 194 Query: 256 FCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313 RY+ +EG+ + S ++ A + ERD F Y GL +L RY + Sbjct: 195 KLRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEP 254 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE Q ++ +A+ LA+ E + + V+ FY++LS +TPTL N+ + QLSSCF Sbjct: 255 IESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCF 314 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + TVPD L GI+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ N Sbjct: 315 IDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVN 374 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Sbjct: 375 DTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRM 434 Query: 493 VTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q N W LF P+E+ L D YGK++E Y + + + R +S + Sbjct: 435 AKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKKWEQKYMDCVNDSRLSK----RCMSIKDI 490 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597 R +L ETG P+ +D N +P H G+++ SNLCTEI N SS ET Sbjct: 491 VRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTE 550 Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 VCNL S++ L H D ++ + T VR LDNVI++N + Sbjct: 551 DGDTVVVKTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNFYP 607 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I A+ +NH +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA Sbjct: 608 IPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELA 667 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761 +E+G+Y F+GS W G + I R P W L +V T GMRN+ Sbjct: 668 KEKGSYHYFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMRNA 712 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPT++ + I G + DP V+ F + E K AM+ Sbjct: 713 YLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AML 750 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + + D I+ +A+ ID W I +A RQ IDQAQSLNLY+ +E Sbjct: 751 PRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEF 801 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + +++ +Y AW G+KT YY+RS+S Sbjct: 802 TLRQVLNLYLLAWECGVKTIYYVRSKS 828 >gi|288928560|ref|ZP_06422407.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331394|gb|EFC69978.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 839 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 291/920 (31%), Positives = 451/920 (49%), Gaps = 137/920 (14%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 + KRNG + FD KI+ AI K+F++ R I V+D I ++ ++ H Sbjct: 3 ITKRNGSMAPFDREKIATAIKKSFIST-----GRPI-VEDEIHDVAIAVEQVIITHPAK- 55 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKLKI 147 +++E IQD+VE SLMQ G + + Y+L+R +R++ R +++ A IAP LK Sbjct: 56 --LNVECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNRIANTLQQAEIAPVLK- 112 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFSS 206 G F + L +++ L+E + ++ D +ALI ++ Sbjct: 113 ----GIAADFEPE------------LYPIAA---LAEKFMGFVKADMNGRDKLSALIKAA 153 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLT-----TVYKKPQKATHHEMQCLYPEYFCRYI 260 L E PN+ + AR L +L+R++ T + QK H Q LY Y Sbjct: 154 VELTSAEAPNWEFIAARLLSYRLQRDLETFEQAEDIQSFAQKVRHLASQNLYGAYIV--- 210 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319 ++ + +L A+ + ER+ Y GL +L RY + + +E Q Sbjct: 211 ----------DAYTENELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQE 260 Query: 320 FFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ +A+ LA+ E E V+ FY++LS +TPTL N+ QLSSCF+ TVPD Sbjct: 261 MFLGIALHLAMNEGENRLHWVKKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPD 320 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ A ++K+ GG+G + VR G I G G + GV+ ++K+ NDTAVAV Sbjct: 321 SLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAV 380 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496 +Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K Q N Sbjct: 381 DQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQQDLN 440 Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 W +F P+EV L D YG+ +E Y +E AD+ + R ++ + R +L Sbjct: 441 QDWHMFCPNEVLTTRGYSLEDFYGEAWEEKY--HECVADKRLSR--RTMTIKDVIRLVLR 496 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------- 598 ETG P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 497 SAVETGTPFTFNRDIVNRANPNGHNGIIYCSNLCTEIAQNMKAIEEVSNEVLTKDGDTVV 556 Query: 599 ----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S++L N+ + + +T+ VR LDNVID+N + + A+ Sbjct: 557 VRTVKPGDFVVCNLASLSLGNLPLENETYLNDIVATV---VRALDNVIDLNFYPVPYAQI 613 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +NH +R+IGLG+ G+ AL L I + S E ++ D+ E I+ AI AS LA+E+GAY Sbjct: 614 TNHRYRSIGLGVSGYHHALALRGIKWESEEHLQFVDQVFERINRAAIEASSSLAKEKGAY 673 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 + F+GS W G + D+ N W + +RVK GMRN+ +AIAP Sbjct: 674 AYFEGSDWQTGAY-----------FDKRNYNSPQ---WQQTAQRVKAQGMRNAYLLAIAP 719 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + + + +DP Q +++ V L R W Sbjct: 720 TSSTSIVAATTAGLDPVMQRFFLEEKKGAMLPRV----APALSDRTFW------------ 763 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 ++ A++ + W + ++ RQ+ IDQAQS+NLY+ + + ++L Sbjct: 764 ---------------LYKGAYQTNQAWSMRASGIRQRHIDQAQSVNLYITNNYTMRQLLD 808 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 LYLLAWQSGVKTIYYVRSKS 828 >gi|168179223|ref|ZP_02613887.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum NCTC 2916] gi|182669564|gb|EDT81540.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum NCTC 2916] Length = 763 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 265/814 (32%), Positives = 413/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG S ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A +FY+LLS +TPTL N+G Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S + Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQL 469 Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 CNL SINL ++ ++ + I +R+LDN Sbjct: 470 LEEEIIDENGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FKGS W+ G + + G +E W +L+ +K Sbjct: 584 IKSSMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +NE + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752 >gi|150005610|ref|YP_001300354.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides vulgatus ATCC 8482] gi|254884473|ref|ZP_05257183.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 4_3_47FAA] gi|294778580|ref|ZP_06744002.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides vulgatus PC510] gi|319640835|ref|ZP_07995548.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A] gi|149934034|gb|ABR40732.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides vulgatus ATCC 8482] gi|254837266|gb|EET17575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 4_3_47FAA] gi|294447529|gb|EFG16107.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides vulgatus PC510] gi|317387647|gb|EFV68513.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A] Length = 839 Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust. Identities = 302/920 (32%), Positives = 458/920 (49%), Gaps = 133/920 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHN 87 +Q+IKRNG S+D KI+ AI K+F++ + + ++ + D ++ Q + N Sbjct: 1 MQIIKRNGTTESYDREKIAVAIRKSFISTQKEITDEAVYTIVDEVEQFLHQN-----EAN 55 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPIAPK 144 +S +E IQD+VE SLM+ G + + Y+LYR +R++ R S D IA Sbjct: 56 RS-----VERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKVLSQIITGTGDDTIANI 110 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALI 203 LK + D F+ K + L+E + + ++ + AL+ Sbjct: 111 LKEIQKD-----FSGKEYSLTF---------------LAEKFTSFCKPDMTSGERLAALV 150 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-E 261 ++ L +E P++ + AR L +L + K ++A + Y + RY+ + Sbjct: 151 KAAVELTTQETPDWEFIAARLLNFRLTK-------KLTEQAEAAGIFSFYDK--LRYLTD 201 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAF 320 EG+ + S ++ A + ERD F Y GL +L RY + IE Q Sbjct: 202 EGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEM 261 Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 ++ +A+ LA+ E + + V+ FY++LS +TPTL N+ + QLSSCF+ TVPD Sbjct: 262 YLGIALHLAMPEKQNRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDS 321 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+ Sbjct: 322 LEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVD 381 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNA 497 Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF M + N Sbjct: 382 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKRDLNQ 441 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P+E+ L D YG+E+E Y + + + R +S + R +L Sbjct: 442 QWHLFCPNEIMTVKGYCLEDYYGEEWEQRYMDCVNDSRLSK----RSMSIKDIVRLILRS 497 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N SS ET Sbjct: 498 AVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVV 557 Query: 598 --------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 VCNL S++ L H D ++ + T VR LDNVI++N + I A+ + Sbjct: 558 KTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNFYPIPFAQIT 614 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 NH +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA+E+GAY Sbjct: 615 NHRYRSIGLGVSGYHHALAVRGIRWESEEHLSFMDKVFERINYAAIAASSELAKEKGAYH 674 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G + I R P W L +V T GMRN+ +AIAP Sbjct: 675 YFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMRNAYLLAIAP 719 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + DP V+ F + E K AM+ + Sbjct: 720 TSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA--- 754 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 + D I+ +A+ D W I +A RQ IDQAQSLNLY+ +E + +++ Sbjct: 755 ------PALSDKTYWIYKSAYLTDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLN 808 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 LYLLAWECGVKTVYYVRSKS 828 >gi|187778604|ref|ZP_02995077.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC 15579] gi|187772229|gb|EDU36031.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC 15579] Length = 763 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 267/819 (32%), Positives = 417/819 (50%), Gaps = 125/819 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI +G ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRNGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ L+ + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIENYSDEEIKELSKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A FY++LS +TPTL N+G Sbjct: 170 YLIKGHNGEVLELPQERFMTIAMHLAIPEGDKKIFYAKGFYDILSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++TV D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGASITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDL---------HDLYGKEFEIAYENYERQADRGE 533 IPDLFM+R+ + W+LF P V + D+ KEF Y E+ Sbjct: 350 VSIPDLFMERLEKREQWSLFDPYMVEKIMDYKLEDYFDDVDCKEFTKRYLECEKN----- 404 Query: 534 IKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 I + R + A+ + +K++ ETG P+I F+D NI +P +H G+++SSNLC EI N Sbjct: 405 INIPRNTVPALDIMKKLMKSAVETGTPFIFFRDTVNIANPNKHKGMIYSSNLCHEIAQNM 464 Query: 593 SSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 S E CNL SINL ++ + + + I + Sbjct: 465 SESELVEEEIIDENGYSEVVQRIKAGDMVTCNLNSINL------SKVEKEDFSKCIPLQI 518 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVI +N +++A+ ++ +RAIGLG G+ L I + S E +++ADE E Sbjct: 519 RMLDNVISLNKLPVKEARVTSDKYRAIGLGTSGYHHFLVNNKIRWESDEHIKVADEIYEE 578 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I++ AI AS+ELA+E+G+Y +FKGS W+ G + + G +E W +L Sbjct: 579 IAYTAIKASMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------KWQQL 624 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + +K GMRN AIAPT + +NI + IDP ++ +++ G FT + +NE Sbjct: 625 QSDIKRYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE 683 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W + A ID W I++ + RQK IDQ Sbjct: 684 ---ENFW---------------------------YYKEAHTIDQQWSIKACAARQKHIDQ 713 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 AQS NLY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 714 AQSFNLYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752 >gi|283768722|ref|ZP_06341633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia extructa W1219] gi|283104508|gb|EFC05881.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia extructa W1219] Length = 836 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 304/924 (32%), Positives = 453/924 (49%), Gaps = 151/924 (16%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI--IKNLTEQTVTRLLQHNK 88 + KRNG FD +KI AI K+F +++ I +D+ I +L EQ + N+ Sbjct: 6 ITKRNGQQVPFDSTKIQMAIRKSFASLQA-----DISEEDLASILDLLEQKII-----NR 55 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 L +E IQD+VE SLM+ G+ ++ ++Y+LYR+ VR Q +++ L++M Sbjct: 56 EKL--DVEFIQDKVEQSLMEKGYFEVAKKYILYRQ----VRTIQRQERNEL-----LELM 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS---ETYKNMYDGLSESDLETALIFS 205 +G +EE LQ + L E Y+N G + D + L+ S Sbjct: 105 AIEG-------------LEEHLLSLQKTYPNLSLKRLKERYENTITG--QEDRLSLLVRS 149 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEYF 256 + L KE P + KV R L +L ++ + + Y+K Q T + LY +Y Sbjct: 150 AAELTSKEEPTWEKVAGRLLAFQLSLKLKQAEDSLGIHSFYEKLQYLTQ---EGLYGDY- 205 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-E 315 I +G + E+ D + D+ F Y GL +L +RY +H I E Sbjct: 206 ---ILKGYHQEEIEEAYHFID---------FSHDYRFTYAGLDLLANRYLIHSRQHVILE 253 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 PQ ++ +A+ LALKE + V+ FY++L+ +TPTL N+ + QLSSCF+ Sbjct: 254 SPQEMYLGIALHLALKEKKYRMEWVKKFYDMLARHEVTMATPTLSNARKPYHQLSSCFID 313 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TVPD L GI+ ++ A ++K+ GG+G VR G I G G S GVI +++V NDT Sbjct: 314 TVPDSLDGIYQSIANFADVSKFGGGMGMYLGKVRSRGGMIRGFEGASGGVIRWIRVINDT 373 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K+V Sbjct: 374 AVAVDQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKKVK 433 Query: 495 Q--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 + N W P ++ L D YG+E+E YE E D K I V R Sbjct: 434 EDINQDWYFMDPHDIFVVKGYHLEDSYGEEWERKYE--ECIQDHRISKRVMSIKEVV--R 489 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595 +L + ETG P+ ++D N +P +H G+++ SNLCTEI N S Sbjct: 490 LILKSIVETGTPFAFYRDAVNRANPNKHAGIIYCSNLCTEIAQNMSEACIESRTIETRDG 549 Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 + VCNL S+ L N+ D +++ ST AVR LDNVID+N + + Sbjct: 550 ETVIVQTQKPGDFVVCNLASLCLGNINVNDIADLERVTST---AVRALDNVIDLNFYPLV 606 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 AK +N +RAIGLG+ G+ L I + S E ++ D E I++ I AS ELA+E Sbjct: 607 NAKITNQNYRAIGLGVSGYHHMLAKNRIQWESEEHLQFVDRVFEDIAYMTIRASHELAKE 666 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RG+YS FKGS W+ G D + + W +L+K ++ GMRN+ M Sbjct: 667 RGSYSLFKGSDWENG--------------DYFRLRKYESERWLKLQKDIQKGGMRNAYVM 712 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPT++ + + G + +DP V+N F + E K L A L Sbjct: 713 AIAPTSSTSILIGTTAGLDP----------------VLNRFFMEEKKGTMLPRTAPELSL 756 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 + + + +A ID + I + RQ+ IDQ+QS NL++ +E Sbjct: 757 ETY---------------WYYKSAHTIDQNYSIRANGIRQRHIDQSQSFNLWITNEYKMS 801 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 +L + A+ G+KT YY RS++ Sbjct: 802 QLLKLLTLAYDCGVKTIYYTRSKA 825 >gi|169825013|ref|YP_001692624.1| ribonucleotide-diphosphate reductase subunit alpha [Finegoldia magna ATCC 29328] gi|167831818|dbj|BAG08734.1| ribonucleoside-diphosphate reductase alpha subunit [Finegoldia magna ATCC 29328] Length = 842 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 289/918 (31%), Positives = 468/918 (50%), Gaps = 126/918 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD SKI A+ KA+ +V G A Q+ ++++ +Q ++ Sbjct: 1 MEIKKRDGNIVDFDRSKIELAMKKAYASV-GIYAE-----QNELESMAQQIENTIVNKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + +D + + + Sbjct: 55 KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFEKF 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D +I + I E S + + + E++ + LS+ D+ L +S Sbjct: 105 ITDDDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266 L+ KE PN+ + + F+ L++ + KK + +++Q + ++++E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--IQYDLQDFKSK--IKFLDERGLYG 209 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325 + E D D+ L + ERD F + L ++ RY + + +R IE Q FM +A Sbjct: 210 SYIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIA 269 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LALKE ++ A + Y+ LS +TPT+ N+ QLSSCF+ TVPD L GI+ Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+ Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 G+V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449 Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+S +L D YG E+E Y + E R I L R ++ ETG Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597 P+ +D N +P +H G+++SSNLCTEI N S + ET Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISENIETEDGDDIIVTKTKPG 565 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S+ L NN ++L + TAVR LDNVID+N + +E AK +N +R Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622 Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + ++RD + W+EL +K GMRN MA+APT + + Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + ++DP V++ + + E K G+I + Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753 Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 R+ L ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813 Query: 890 RQAWLMGLKTTYYLRSRS 907 +AW G+K+ YY+RS+S Sbjct: 814 VRAWEKGIKSIYYVRSKS 831 >gi|223983471|ref|ZP_03633657.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM 12042] gi|223964643|gb|EEF68969.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM 12042] Length = 841 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 297/919 (32%), Positives = 456/919 (49%), Gaps = 129/919 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+ V ++D KISRA+ AF AS + ++ K V ++ Sbjct: 1 MEIIKRDQSVQAYDRRKISRAVSAAF-------ASVGHPLPEMTKEAILDQVEVQIRGAA 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 V +E IQD VE +LM+ ++ R Y+LYR+E + +R +L+ + Sbjct: 54 ETAPVSVEQIQDWVEQALMRQNCYEEARHYILYRQEHARLRDQ----------IDQLRRI 103 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D +++ ++L+ + L + K+ K + S LI + Sbjct: 104 IPDPEILA-TCRQLQRDFSQPAMSLDALIQKVQAFSKEK-----MKRSQQLDNLIRACVE 157 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVKA 266 L+ +E P++ K ARF++ KLRR V Q+ ++ L + Y+E +G+ Sbjct: 158 LVSQEAPDWEKAAARFMMIKLRRSV-------SQRMEAQGIRTLAQKLL--YLEAQGLLN 208 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325 + L E DL L + ERD F GL++L RY + + G +E+PQ FM +A Sbjct: 209 KDLSEHYSYNDLNRLEQAIDNERDQLFNASGLELLIKRYLIRDHQGEVLELPQEMFMGIA 268 Query: 326 MGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 M LA+ E + + + A++ Y++LS +TPTL N+ QL+SCF+ VPD L GI+ Sbjct: 269 MHLAIPEGKNRVEWAIKIYDVLSQLQVTMATPTLANARKPKAQLASCFIDVVPDSLKGIY 328 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 +L A ++K GG+G + VR G+ I G G + GV+ ++++ NDTAVAV+Q G R Sbjct: 329 KSLDSFAQISKQGGGMGLYFGKVRASGSDIRGFQGAAGGVLRWIRLVNDTAVAVDQLGVR 388 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLF 502 +GAV YL+ WH D+ EFL +R N GDDR + HD+ A PDLF M + + + W L Sbjct: 389 QGAVAVYLDCWHRDLPEFLQIRTNNGDDRMKAHDVFPAVCYPDLFWRMAKASLDQNWYLM 448 Query: 503 SPDEVSD-----LHDLYGKEFEIAYENYERQAD-RGEIKVFRKISAVALWRKMLTMLFET 556 P ++ L D G+ +E Y+ E AD R E +V I L R +L ET Sbjct: 449 DPHQIQTVKGYALEDCTGELWEQRYQ--ECVADSRIEKRV---ILLKDLVRLILKSAAET 503 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593 G P++ +D N +P H GV++ SNLCTEI N + Sbjct: 504 GTPFVFNRDLVNAMNPNGHRGVIYCSNLCTEIAQNIAPAGEIETRMTEIDGEMVIIEQAK 563 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + E VCNL S+NL N D ++L S I VR LDNVID+N + + +A+++ Sbjct: 564 AGEMVVCNLASLNL---GRLNTEDEEELRSVIEVTVRALDNVIDLNAYPLPQAQRTASRS 620 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 RAIGLG+ G L I + S E + AD+ E I+++AI AS++LAQE+G Y+ F+G Sbjct: 621 RAIGLGVSGLHHWLAKRSIFFESEEHLNAADKLFEAINYNAIRASLQLAQEKGRYADFEG 680 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G + G ++ W L K V G+RN +AIAPT++ + Sbjct: 681 SDWQTGAY-FTKRGYTSDA-------------WQTLAKEVARYGLRNGWLLAIAPTSSTS 726 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S +DP ++N F + E K GSI Sbjct: 727 VIAGTSAGVDP----------------IMNKFFLEEKK-----------------GSI-- 751 Query: 834 IERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 I R+ +L + + A +ID W++ +A RQ+ IDQAQS+NLY+ + S + L + Sbjct: 752 IARVAPELNEKTYWYYKKAHQIDQTWVVRAAGVRQRHIDQAQSVNLYITTDYSLRDLLNL 811 Query: 889 YRQAWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 812 MILAWEKGVKTLYYVRSQS 830 >gi|313887772|ref|ZP_07821454.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846381|gb|EFR33760.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 842 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 297/922 (32%), Positives = 463/922 (50%), Gaps = 134/922 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++++KR+ FD KI AI KAF +V GK V +I LL++ Sbjct: 1 MKILKRDKREVDFDHLKIKNAIEKAFDSV-GKSY-----VDSVINAYALDIKETLLKNYD 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145 +E+IQD VE L+ ++ + Y+LYR S+ R ++ +D + L Sbjct: 55 PKNPPTVEEIQDLVELKLIDEKEIEVVKAYILYRNRHSEERQILDKFANYITDDKVLKIL 114 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + +++ K+ E+ E + K + Y LSE +I + Sbjct: 115 KFVRK-----TYDPKKYEL--ENLYKKFESFVKKDQSQDAY------LSE------IIKA 155 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL-YPEYFCRYIEEG 263 + L +K+ P + + A FL L +++ KA E + + E E+G Sbjct: 156 ASELTDKDAPRWEFIAALFLNYDLEKKI---------KANLEEFKINNFYEKIVFLTEKG 206 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322 + + + E+ D++ L + + R+ Y GL +L RY + + R +E Q FM Sbjct: 207 LYGKYILENYSKEDILELEDYIDNSRNRLLNYSGLDLLIKRYVIRSHDGRFVESIQEMFM 266 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA+ E + A +FY++ SS +TPT+ N+ + QLSSCF+ TVPD L G Sbjct: 267 GIAMHLAIPEKNRIYWAKKFYDIYSSLKVTVATPTMSNARKPYNQLSSCFIDTVPDTLKG 326 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G Sbjct: 327 IYRSIDNFAQISKHGGGMGLYFGKVRATGSDIRGFKGVAGGVIRWIKLANDTAVAVDQLG 386 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+G+V YL+ WH D+ EFL LR N GDDR + HD+ A P+LF + + NA W Sbjct: 387 VRQGSVACYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAISYPNLFFELAEKDINATWY 446 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +F P EV L D YGKE+E Y R+ E R++S L R ++ L E Sbjct: 447 MFDPHEVLAKKGYSLEDFYGKEWEEKY----RECIEDESISRREMSVKDLVRLIIKSLTE 502 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597 TG P+ ++D N +P +HVG+++SSNLCTEI N S+ ET Sbjct: 503 TGTPFAFYRDNVNEMNPNKHVGMIYSSNLCTEIMQNMSAIETLDTTIETEDGDEVIVTKT 562 Query: 598 -----AVCNLGSINLLAHFANNQFDYDK-LASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 VCNL S+ L N + DK L + T VR LDNVID+N + I AK +N Sbjct: 563 KPGDFVVCNLASLVL----GNIDLEDDKELKDIVATTVRALDNVIDLNYYPIPYAKVTNR 618 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSS 710 +R+IGLG G+ AL + ++ E ++ AD+ E I+FHA++AS+E+A+E+G+Y Sbjct: 619 KYRSIGLGTSGYHHALVKAGMAFSDIEDHLKWADDLYERINFHAVTASMEIAKEKGSYDF 678 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F+GS W+ G + ++RD W++L++ VK G+RN MAIAPT Sbjct: 679 FEGSDWENGNY--------FDLRD------YKDAKWNKLREEVKANGLRNGYIMAIAPTG 724 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + + I S +DP ++N + + E K GS Sbjct: 725 STSIIAATSAGVDP----------------IMNRYFLEEKK-----------------GS 751 Query: 831 IGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 I + R+ DL ++ A E+D ++IE+A+ RQ+ IDQAQS+N Y+ + + +K+ Sbjct: 752 I--LPRVAPDLTPQSFWLYENAHELDQNFVIEAAAIRQRHIDQAQSINFYITTDFTMRKI 809 Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907 +Y +A LK+ YY+RS+S Sbjct: 810 LNLYIKAAKEKLKSVYYVRSKS 831 >gi|226950224|ref|YP_002805315.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A2 str. Kyoto] gi|226843054|gb|ACO85720.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A2 str. Kyoto] Length = 763 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 264/814 (32%), Positives = 412/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG S ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ +FY+LLS +TPTL N+G Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYGKKFYDLLSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S + Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHRGMIYSSNLCHEIAQNMSESQL 469 Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 CNL SINL ++ ++ + I +R+LDN Sbjct: 470 LEEEIIDENGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FKGS W+ G + + G +E W +L+ +K Sbjct: 584 IKSSMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +NE + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752 >gi|302379637|ref|ZP_07268122.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna ACS-171-V-Col3] gi|302312544|gb|EFK94540.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna ACS-171-V-Col3] Length = 842 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 288/918 (31%), Positives = 468/918 (50%), Gaps = 126/918 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD SKI A+ KA+ +V G A Q+ ++++ ++ ++ Sbjct: 1 MEIKKRDGNIVDFDRSKIELAMKKAYASV-GIYAE-----QNELESMAQEIENTVVNKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + +D + + + Sbjct: 55 KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFEKF 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D +I + I E S + + + E++ + LS+ D+ L +S Sbjct: 105 ITDDDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVDLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266 L+ KE PN+ + + F+ L++ + KK + +++Q + ++++E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--IQYDLQDFKSK--IKFLDERGLYG 209 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325 + E D D+ L + ERD F + L ++ RY + + +R IE Q FM +A Sbjct: 210 SYIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIA 269 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LALKE ++ A + Y+ LS +TPT+ N+ QLSSCF+ TVPD L GI+ Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+ Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 G+V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449 Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+S +L D YG E+E Y + E R I L R ++ ETG Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597 P+ +D N +P +H G+++SSNLCTEI N S + ET Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPG 565 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S+ L NN ++L + TAVR LDNVID+N + +E AK +N +R Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622 Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + ++RD + W+EL +K GMRN MA+APT + + Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + ++DP V++ + + E K G+I + Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753 Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 R+ L ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813 Query: 890 RQAWLMGLKTTYYLRSRS 907 +AW G+K+ YY+RS+S Sbjct: 814 VRAWEKGIKSIYYVRSKS 831 >gi|167756570|ref|ZP_02428697.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402] gi|167702745|gb|EDS17324.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402] Length = 846 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 290/924 (31%), Positives = 460/924 (49%), Gaps = 139/924 (15%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR---VQDIIKNLTEQTVTR 82 +K + + KRNG +D +KI AI KAF ++ S +I+ ++ +I ++ + + Sbjct: 9 VKKMLIQKRNGLFQDYDNNKIETAIKKAFCSL-----SETIKDDELKKMIADIEKHIIAD 63 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 + +E IQD VE +LM+ G+ ++ + Y+LYR Q H++ I Sbjct: 64 M----------SVEAIQDLVEETLMKHGYLQVAKAYILYR---------QKHTEQRLIID 104 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETA 201 L ++ D N K++ + + + Q+ S +L +K Y +G+S + Sbjct: 105 ELLALLGDQ------NLKKVLLKIHKDYP--QEEYSLQLLLVKFKTFYKEGMSHFEALKM 156 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 L+ +S LI KE P + ++ARFL + ++V QK Y E Sbjct: 157 LMKASVELISKEAPKWEMISARFLTYDVNQQV-------DQKMNTAGRYTFY-ERINYLA 208 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 ++G + + ES ++ L + R+ F Y GL+++ RY + N R IE PQ Sbjct: 209 QQGYYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQ-NHDREIIEKPQ 267 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FM +AM LA+ E+ + K A E Y++LS+ +TPT+ N+ Q+SSCF+ TV D Sbjct: 268 EMFMSIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDD 327 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ A ++K GG+G + VR G+ I G G + GVI +LK+ NDTA AV Sbjct: 328 SLAGIYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAV 387 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496 +Q G R+GA YL+ WH D+ EFL +R N GDDR + HD+ A PDLF K + Sbjct: 388 DQLGVRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLE 447 Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 A W + P E+ + L D YG+E+E Y YE D K R ++ + R ++ Sbjct: 448 ASWYMMCPHEIHEVKGYYLEDCYGEEWERKY--YECVEDDRIPK--RVMTVKEIVRLIIK 503 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597 L ETG P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 504 SLVETGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETII 563 Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S+ L H + + D+L I +R LDNVID+N + I AK Sbjct: 564 VEKTKPGDFVVCNLASLT-LGHL--DVLNDDELRHVISVVIRALDNVIDLNYYPIPFAKI 620 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG G+ L L + + S E ++ ++ E I++ A+ AS +LA+E+G+Y Sbjct: 621 TNQKYRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSY 680 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 S F GS ++ G + I R W L+ ++K G+RN +AIAP Sbjct: 681 SLFNGSDFETGAYFIK--------------RRYQSKAWQNLQAKIKENGLRNGYLLAIAP 726 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + ++DP ++ + + E K Sbjct: 727 TSSTSIIAGTTAAVDP----------------IMKKYFMEEKK----------------- 753 Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 GS+ I R+ DL ++ A ID W++++A RQ+ +DQ+QS+NLY+ +E + + Sbjct: 754 GSM--ITRVAPDLDSETFWLYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFR 811 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 KL +Y +AW G+KT YY+RS+S Sbjct: 812 KLLNLYIKAWEYGVKTLYYVRSQS 835 >gi|307169039|gb|EFN61884.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus floridanus] Length = 744 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/736 (33%), Positives = 393/736 (53%), Gaps = 48/736 (6%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231 V I+ ++Y G++ +L+ + ++I + P+YA + AR + L +E Sbjct: 34 VDPSIIALRVITDLYSGVTTVELDNLASEIAASMINQHPDYAILAARIAISNLHKETKKT 93 Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 V+ +Y T+ + + +Y+ + I+ L + + Y+ Sbjct: 94 FSEVIADLYDAKNSITNKRLPIISEKYY-KIIQSNADK--------------LNSAIIYD 138 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RDF + Y ++L + L +NG +E PQ MRVA+ + + +K A+E YN LS Sbjct: 139 RDFNYSYTTYKMLETNHLLKLNGKVVERPQHMLMRVAIAIHDDDIDK---AIETYNFLSK 195 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 +F+ TL + T Q++S FL T+ D + GI L+ +A+L Y+G +G + + Sbjct: 196 QYFIYPAQTLDTACTVTQQMASSFLLTMSGDSIDGILDTLERSAVLCHYNGDIGFNVHCI 255 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R I GT G S G++P LK N + V++ K V YLE WH D+ EFLDL+K Sbjct: 256 RAKNTPIRGTGGVSNGLVPMLKAYNTSIATVSR--KNTEQVTVYLEPWHADIFEFLDLKK 313 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 N G+++ R DM A W PDLFM+R+ + W+L P E DL + YG+EFE+ Y YE+ Sbjct: 314 NIGEEKLRAKDMFYALWTPDLFMQRIFNDDVWSLMCPHECPDLIEAYGEEFELLYTRYEK 373 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + FRK I A LW ++ FETG P+I +KD CN ++ Q++G + S T Sbjct: 374 EGR------FRKQIKARDLWLLIIQTQFETGTPYIVYKDHCNRKTNHQNLGTIKCSGFST 427 Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 EI SSS+E A+CN SI N+ FD++KL ++ LD +ID N + + Sbjct: 428 EIIQYSSSDEIAMCNTASIAVNMFVDPIKKTFDFNKLKEIVKIVTYNLDKMIDANFYPLP 487 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + K S HR+IG+G+ G A L+ P+ S EA ++ + E + + A+ AS E+A + Sbjct: 488 EIKLSCEKHRSIGIGVQGLADAFILMRYPFESQEARKLNIQIFETLYYGALEASCEIAIK 547 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G+Y S+KGS PI S G+L D T W+ LKK+++ G+RNS + Sbjct: 548 KGSYVSYKGS-------PI-SKGMLQ--YDMWNAKPTDLWDWNTLKKKIEEHGVRNSLLI 597 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A A +A + + S++P N+YV +S F +V L+ +L ++ LWDE + + + Sbjct: 598 AQMSDAFMAQMLENNVSVEPYTSNIYVIHALSKQFRIVKPRLLRDLIEKKLWDENICNKI 657 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 +DGSI NIE IP++LK ++ TA+E+ + + A+ R +IDQ+Q LN+++ +P +K Sbjct: 658 INNDGSIQNIEDIPNELKLLYKTAWEMPQKTIFDMAACRGPFIDQSQCLNVHMIDPL-EK 716 Query: 885 LDFIYRQAWLMGLKTT 900 L ++ AW GLK++ Sbjct: 717 LTSMHFYAWENGLKSS 732 >gi|170758616|ref|YP_001788132.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum A3 str. Loch Maree] gi|169405605|gb|ACA54016.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A3 str. Loch Maree] Length = 763 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 263/814 (32%), Positives = 411/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKIIQNGKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKTKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A +FY+LLS +TPTL N+G Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TTFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S + Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQL 469 Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 CNL SINL ++ ++ + I +R+LDN Sbjct: 470 LEEKIIDDNGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FK S W+ G + + G +E W +L+ +K Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +NE + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752 >gi|237733861|ref|ZP_04564342.1| ribonucleotide-diphosphate reductase subunit alpha [Mollicutes bacterium D7] gi|229382942|gb|EEO33033.1| ribonucleotide-diphosphate reductase subunit alpha [Coprobacillus sp. D7] Length = 838 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 290/924 (31%), Positives = 460/924 (49%), Gaps = 139/924 (15%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR---VQDIIKNLTEQTVTR 82 +K + + KRNG +D +KI AI KAF ++ S +I+ ++ +I ++ + + Sbjct: 1 MKKMLIQKRNGLFQDYDNNKIETAIKKAFCSL-----SETIKDDELKKMIADIEKHIIAD 55 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 + +E IQD VE +LM+ G+ ++ + Y+LYR Q H++ I Sbjct: 56 M----------SVEAIQDLVEETLMKHGYLQVAKAYILYR---------QKHTEQRLIID 96 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETA 201 L ++ D N K++ + + + Q+ S +L +K Y +G+S + Sbjct: 97 ELLALLGDQ------NLKKVLLKIHKDYP--QEEYSLQLLLVKFKTFYKEGMSHFEALKM 148 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 L+ +S LI KE P + ++ARFL + ++V QK Y E Sbjct: 149 LMKASVELISKEAPKWEMISARFLTYDVNQQV-------DQKMNTAGRYTFY-ERINYLA 200 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 ++G + + ES ++ L + R+ F Y GL+++ RY + N R IE PQ Sbjct: 201 QQGYYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQ-NHDREIIEKPQ 259 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FM +AM LA+ E+ + K A E Y++LS+ +TPT+ N+ Q+SSCF+ TV D Sbjct: 260 EMFMSIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDD 319 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ A ++K GG+G + VR G+ I G G + GVI +LK+ NDTA AV Sbjct: 320 SLAGIYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAV 379 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496 +Q G R+GA YL+ WH D+ EFL +R N GDDR + HD+ A PDLF K + Sbjct: 380 DQLGVRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLE 439 Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 A W + P E+ + L D YG+E+E Y YE D K R ++ + R ++ Sbjct: 440 ASWYMMCPHEIHEVKGYYLEDCYGEEWERKY--YECVEDDRIPK--RVMTVKEIVRLIIK 495 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597 L ETG P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 496 SLVETGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETII 555 Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S+ L H + + D+L I +R LDNVID+N + I AK Sbjct: 556 VEKTKPGDFVVCNLASLT-LGHL--DVLNDDELRHVISVVIRALDNVIDLNYYPIPFAKI 612 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG G+ L L + + S E ++ ++ E I++ A+ AS +LA+E+G+Y Sbjct: 613 TNQKYRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSY 672 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 S F GS ++ G + I R W L+ ++K G+RN +AIAP Sbjct: 673 SLFNGSDFETGAYFIK--------------RRYQSKAWQNLQAKIKENGLRNGYLLAIAP 718 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + ++DP ++ + + E K Sbjct: 719 TSSTSIIAGTTAAVDP----------------IMKKYFMEEKK----------------- 745 Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 GS+ I R+ DL ++ A ID W++++A RQ+ +DQ+QS+NLY+ +E + + Sbjct: 746 GSM--ITRVAPDLDSETFWLYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFR 803 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 KL +Y +AW G+KT YY+RS+S Sbjct: 804 KLLNLYIKAWEYGVKTLYYVRSQS 827 >gi|320538425|ref|ZP_08038293.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema phagedenis F0421] gi|320144720|gb|EFW36468.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema phagedenis F0421] Length = 845 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 284/920 (30%), Positives = 452/920 (49%), Gaps = 127/920 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRNG ++ KI RAI AF +V AS + I+ +LT + + +K Sbjct: 1 MEIIKRNGERRPYEAEKIGRAIRAAFDSVP---ASPHTDIGKIVDSLTMEIEGDIKDLSK 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +V +E IQD VE +L++ ++ + ++LYR +R+ R A+ + P ++ Sbjct: 58 NGNLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVDRTKKRDARKTIEQSFPTIDVRSVL 117 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 ++ + + L ++ + S +K + +SE + LI ++ Sbjct: 118 LEVQNDFTEDEYNLNLLSHKFHS--------------FKK--NDMSERECLNLLIKAAVE 161 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCR-YIE 261 L +E P + + +R L+ E+ + K+ +K ++ E LY +Y + Y + Sbjct: 162 LTAQEAPRWELIASRLLMLSFTEELSVELEKRNIHSFYEKISYLEENGLYGDYIRKHYTK 221 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAF 320 E ++ + + ER+ Y L +L RY + G +E PQ Sbjct: 222 EELETAFSY--------------IDTERNKLLTYSSLDMLLRRYVIRTRGHIPLETPQEM 267 Query: 321 FMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+ +A+ LA+ E EK V +FY++LS +TPT+ N+ + QLSSCF+ TVPD Sbjct: 268 FLGIALHLAMLEKEKRMYWVKQFYDMLSKLQVTMATPTISNARKPYHQLSSCFIDTVPDS 327 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ ++ A ++K+ GG+G + VR +G+ I G G + G+I ++K+ANDTAVAV+ Sbjct: 328 LDGIYRSIDNFAKISKFGGGMGLYFGKVRAVGSPIRGFQGAAGGIIRWIKLANDTAVAVD 387 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497 Q G R+G+V YL+ WH DV EFL LR N GDDR + HD+ A PDLF K V NA Sbjct: 388 QLGVRQGSVAVYLDIWHKDVPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKTVRDDINA 447 Query: 498 GWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W L P E+ L D +G E+E Y++ + + + R+I L R +L Sbjct: 448 SWYLMCPHEILSVKGYSLEDYFGDEWEKRYKDCVQDSRISK----REIPIKELVRLILKS 503 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----SSSEET---------- 597 ETG P+ ++D N +P H G+++ SNLCTEI N S S+E Sbjct: 504 AVETGTPFAFYRDAANKTNPNGHKGMIYCSNLCTEIAQNMSPIQSQSQEIKTVDGETVVV 563 Query: 598 --------AVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S+ L N + D +L + + VR LDNVID+N + + AK Sbjct: 564 TTTKPGDFVVCNLASLVL----GNIEVTDRKELQRIVYSVVRALDNVIDLNYYPVPYAKI 619 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG G+ L +I + S E + D+ E I+F AI AS+++A+E+G+Y Sbjct: 620 TNGQYRAIGLGTSGYHHMLAKQNIAWESEEHLRFVDKVFEDINFAAIEASMQIAKEKGSY 679 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G + N TS W L+K V+T GMRN +AIAP Sbjct: 680 LYFEGSDWQTGAYFTKR-------------NYTSE-RWQALQKEVQTSGMRNGYLLAIAP 725 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + DP + +++ V L + W Sbjct: 726 TSSTSIIAGTTAGTDPVMKRYFLEEKKGALMPRV----APALSMKTFW------------ 769 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 ++ A ID W + +A RQ+ +DQAQS+NLY+ + + KK+ Sbjct: 770 ---------------LYKNAHLIDQEWSMRAAGVRQRHVDQAQSVNLYITTDYTFKKVLG 814 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y +AW G+K+ YY+RS+S Sbjct: 815 LYLKAWEEGVKSIYYVRSQS 834 >gi|303234657|ref|ZP_07321286.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna BVS033A4] gi|302494222|gb|EFL53999.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna BVS033A4] Length = 842 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 287/918 (31%), Positives = 467/918 (50%), Gaps = 126/918 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD KI A+ KA+ +V G A Q+ ++++ ++ ++ Sbjct: 1 MEIKKRDGNIVDFDRLKIELAMKKAYASV-GIYAE-----QNELESMAQEIENTVVNKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + +D + + + Sbjct: 55 KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFEKF 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D +I + I E S + + + E++ + LS+ D+ L +S Sbjct: 105 ITDDDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266 L+ KE PN+ + + F+ L++ + KK + +++Q + ++++E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--IQYDLQDFKSK--IKFLDERGLYG 209 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325 + E D D+ L + ERD F + L ++ RY + + +R IE Q FM +A Sbjct: 210 SYIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIA 269 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LALKE ++ A + Y+ LS +TPT+ N+ QLSSCF+ TVPD L GI+ Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+ Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 G+V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449 Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+S +L D YG E+E Y + E R I L R ++ ETG Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597 P+ +D N +P +H G+++SSNLCTEI N S + ET Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPG 565 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S+ L NN ++L + TAVR LDNVID+N + +E AK +N +R Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622 Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + ++RD + W+EL +K GMRN MA+APT + + Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + ++DP V++ + + E K G+I + Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753 Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 R+ L ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813 Query: 890 RQAWLMGLKTTYYLRSRS 907 +AW G+K+ YY+RS+S Sbjct: 814 VRAWEKGIKSIYYVRSKS 831 >gi|239826136|ref|YP_002948760.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp. WCH70] gi|239806429|gb|ACS23494.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. WCH70] Length = 761 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 261/749 (34%), Positives = 378/749 (50%), Gaps = 82/749 (10%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D LS + LI + I E EP + V A L+KL +E K+ Sbjct: 56 DTLSAEQITNYLILEGLSYISEAEPEWTFVCAHIYLQKLYKEAA----KQRGYDAKQRYG 111 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 LY E + +GV R L ++ ++ L + ++D F Y+GL+ L DRY Sbjct: 112 SLY-ELITTLVSKGVYDRSLLDNYSKEEINELGKLIDPDKDKLFTYIGLRTLADRYLARD 170 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP 366 + + E+PQ F+ +AM L KE + + E Y LS+ + +TPTL N+G + Sbjct: 171 YDRNLYELPQERFLIIAMTLMAKEPKHRRFTFIQEAYWALSNLYMTVATPTLANAGKSYG 230 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSCF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S GVIP Sbjct: 231 QLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIP 290 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++K N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD+ T IP Sbjct: 291 WMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIP 350 Query: 487 DLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-FEIAYENYERQADRGEIKVFRKI 540 DLFM++V + W LF P EV L D Y +E ++ Q + E K+ Sbjct: 351 DLFMEQVEKRGDWYLFDPHEVRKVMGFSLEDFYDEEKGSGSFREKYWQCVQEERLSKEKV 410 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 A+ + + ++ E+G P++ ++D N ++P H+G+++ SNLCTEI N S Sbjct: 411 PAIEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTVVEKQ 470 Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 + VCNL SINL + D L I +R+LDNVID+N Sbjct: 471 YTKDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNNI 525 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +AK +N +RA+GLG G+ L L I + S EAVE AD+ E I++ AI AS+EL Sbjct: 526 PVLQAKFTNQKYRAVGLGTFGWHHLLALKGIRWESDEAVEYADKLYEKIAYLAIKASMEL 585 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G+Y +F GS W G + D+ +RT WD LK++V GMRN Sbjct: 586 AKEKGSYPAFPGSDWQTGAY-----------FDKRGYHRTEEFDWDALKEQVAKHGMRNG 634 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 MAIAP A+ + I G + SIDP + +Y + V V +L W Sbjct: 635 YVMAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNAETTW----- 685 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880 + +A+ ID W I+ + RQ+ IDQA S N Y L+ Sbjct: 686 ----------------------YYKSAYHIDQHWSIKQNAARQRHIDQAISFNFYVLNTI 723 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 K+L ++ AW GLKTTYY+RS S+T Sbjct: 724 KAKELLDLHLTAWKSGLKTTYYVRSTSST 752 >gi|138894465|ref|YP_001124918.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus thermodenitrificans NG80-2] gi|134265978|gb|ABO66173.1| Ribonucleoside-diphosphate reductase alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 785 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 262/812 (32%), Positives = 401/812 (49%), Gaps = 111/812 (13%) Query: 147 IMMDD-GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL------- 198 I++DD G S + + ++E+A +G +S L E + ++ LS + Sbjct: 33 IVVDDQGKEKSLSRREFAALIEQATAGFVRLS----LEEYEERVWQLLSRKEFVTVDQLY 88 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 +TA++ + E+EP + V AR L + Y++ + ++ + Y +++ Sbjct: 89 QTAILEGLSYISEEEPEWTFVCARLYLRMM--------YREAARQRGYDARERYGDFYSL 140 Query: 259 YI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314 + E+GV + LL E ++ + L ++D F Y+GL+ L DRY R+ Sbjct: 141 IVSLTEQGVYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLY 200 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E+PQ F+ +AM L + E K + + E Y LS+ + +TPTL N+G + QLSSCF Sbjct: 201 ELPQERFLIIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCF 260 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + TV D L I+ + + A L+K GG+G +R G+ I G G S GVIP++K N Sbjct: 261 VDTVDDSLQAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLN 320 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 +TAV+V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++ Sbjct: 321 NTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQ 380 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKI 540 V Q W LF P EV + ++F Y+ + RG + K+ Sbjct: 381 VEQRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVNDSRLSKEKV 434 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597 A+ + + ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S T Sbjct: 435 PAIEVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQ 494 Query: 598 ----------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 VCNL SINL + F+ I +R+LDNVID+N Sbjct: 495 YVKDGTIIIEKIPGDFVVCNLSSINLARAVTDGVFE-----RLIPIQLRMLDNVIDLNNI 549 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A +N +RA+GLG G+ L L I + S EAV DE E I++ AI AS+EL Sbjct: 550 PVLQASLTNKKYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLAIQASMEL 609 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G+Y F GS W G + + WD LK+ V GMRN Sbjct: 610 AKEKGSYPGFSGSDWQTGAY-----------FERRGYKNHGERDWDRLKREVARYGMRNG 658 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 MA+AP A+ + I G + SIDP ++ +Y + V V +L ++ W Sbjct: 659 YLMAVAPNASTSIIAGSTASIDPIFRKVYAEEKKDYKIPVT----VPDLNEQTTW----- 709 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880 + +A+ ID W I + RQ+ IDQA S N Y ++ Sbjct: 710 ----------------------YYKSAYYIDQRWSIRQNAARQRHIDQAISFNFYVMNTI 747 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 K+L ++ AW GLKTTYY+RS S T E Sbjct: 748 KAKELLELHLTAWKSGLKTTYYVRSTSGTMEE 779 >gi|297587435|ref|ZP_06946080.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia magna ATCC 53516] gi|297575416|gb|EFH94135.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia magna ATCC 53516] Length = 842 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 287/918 (31%), Positives = 464/918 (50%), Gaps = 126/918 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD SKI A+ KA+ +V G + + E T+ N Sbjct: 1 MEIKKRDGNIVDFDRSKIKLAMKKAYASV---GIYAEENELEAMAQEIENTIVNKYPKNH 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + +D + + + Sbjct: 58 ---VVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFERF 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D +I + I E S + + + E++ + LS+ D+ L +S Sbjct: 105 ITDEDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266 L+ KE PN+ + + F+ L++ + KK + +++Q + ++++E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--VQYDLQDFKSK--IKFLDERGLYG 209 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325 + E D D+ L + +RD F + L ++ RY + + +R+ E Q FM +A Sbjct: 210 SYIREVYTDDDIDELEKYIDDDRDKLFTFSALDLIIKRYLIKTHDNRVMESAQEMFMGIA 269 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LALKE ++ A + Y+ LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSTLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+ Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 G+V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449 Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+S +L D YG E+E Y + E R I L R ++ ETG Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597 P+ +D N +P +H G+++SSNLCTEI N S + ET Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPG 565 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S+ L NN ++L + TAVR LDNVID+N + +E AK +N +R Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622 Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + ++RD + W+EL +K GMRN MA+APT + + Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + ++DP V++ + + E K G+I + Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753 Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 R+ L ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813 Query: 890 RQAWLMGLKTTYYLRSRS 907 +AW G+K+ YY+RS+S Sbjct: 814 IRAWEKGIKSIYYVRSKS 831 >gi|148380774|ref|YP_001255315.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium botulinum A str. ATCC 3502] gi|153930834|ref|YP_001385058.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum A str. ATCC 19397] gi|148290258|emb|CAL84377.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium botulinum A str. ATCC 3502] gi|152926878|gb|ABS32378.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A str. ATCC 19397] Length = 763 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 263/814 (32%), Positives = 411/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ + +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-QLVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A +FY+LLS +TPTL N+G Sbjct: 170 YLIKGNNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRKEFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469 Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + CNL SINL ++ ++ I +R+LDN Sbjct: 470 LEEEIIDGNGYSEIVQRVKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FK S W+ G + + G +E W +L+ +K Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +NE + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 719 LYITPEIKAKEILNMYIESWKQGVKTIYYVRNKS 752 >gi|153939013|ref|YP_001392092.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum F str. Langeland] gi|152934909|gb|ABS40407.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum F str. Langeland] Length = 763 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 263/814 (32%), Positives = 410/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A +FY+LLS +TPTL N+G Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469 Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + CNL SINL ++ ++ I +R+LDN Sbjct: 470 LEEEIIDGNGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FK S W+ G + + G +E W +L+ +K Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +NE + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752 >gi|282879358|ref|ZP_06288102.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella buccalis ATCC 35310] gi|281298555|gb|EFA90980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella buccalis ATCC 35310] Length = 839 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 291/927 (31%), Positives = 458/927 (49%), Gaps = 147/927 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG +D KI+ AI K+F++ + + +I +++++ + T ++ N Sbjct: 1 MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDATI--YQMVQSVEDIVCTNHIKQN- 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145 +E IQD+VE +LM++G++ + ++L+R +R+++R + DA I L Sbjct: 58 ------VESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRIAEDLQDAHITEVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K + D F K S ++L + Y + G++ ++ ALI Sbjct: 112 KHIAAD-----FTDKEY---------------SILLLIDKYASFSKAGMTATERMDALIK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEY 255 ++ L +E P + + AR L +L + + L ++Y K + T LY Y Sbjct: 152 AAVELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFLTDRN---LYGAY 208 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRI 314 +++ KA + E F + R+ Y GL++L RY + + + S I Sbjct: 209 I---LQQYSKAEI--EQAATF--------MDASRNHLLNYSGLELLIKRYVIRNFDNSPI 255 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E Q F+ +A+ LA+ E + V+ FYN+LS +TPTL N+ QLSSCF+ Sbjct: 256 ESVQEMFLGIALHLAMNEPQDRMTWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFI 315 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD L GI+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ ND Sbjct: 316 DTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVND 375 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K Sbjct: 376 TAVAVDQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMA 435 Query: 494 TQNAG--WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-L 545 +N W +F P+EV +L D YG+E+E Y ++ AD + R+I + + Sbjct: 436 EENLNQDWYMFCPNEVMTAKGYNLEDYYGEEWEKRY--WDCVAD---TSISRRIMPIKEI 490 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------- 598 R +L ETG P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 491 VRLILRSAVETGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTE 550 Query: 599 ----------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 VCNL S++L H D ++ + + VR LDNVID+N + Sbjct: 551 EGDTVVVRTVKPGDFVVCNLASLSL-GHLKLE--DETEMKEVVSSVVRALDNVIDLNFYP 607 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + AK +N T+R+IGLG+ G+ AL + I + S E + D+ E I+ AI AS ++A Sbjct: 608 LPFAKITNRTYRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIA 667 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761 +++G+Y F+GS W G E R P W L K+V GMRN+ Sbjct: 668 KQKGSYKYFEGSDWQTG---------------EYFTKRQYTSPQWKALAKKVSQQGMRNA 712 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPT++ + I + +DP V+ F + E K AM+ Sbjct: 713 YLLAIAPTSSTSIIAATTAGVDP----------------VMKRFFLEEKKG------AML 750 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + + D ++ +A+ ID W + +A RQK IDQAQS+NLY+ + Sbjct: 751 PRVA---------PSLSDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNY 801 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + ++L +Y AW G+KT YY+RS+S Sbjct: 802 TMRQLLGLYTLAWHCGVKTIYYIRSKS 828 >gi|170754701|ref|YP_001782420.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum B1 str. Okra] gi|169119913|gb|ACA43749.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum B1 str. Okra] Length = 763 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 261/814 (32%), Positives = 410/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A +FY++LS +TPTL N+G Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDILSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469 Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + CNL SINL ++ ++ I +R+LDN Sbjct: 470 LEEEIIDGNGYSEIVQRVKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FK S W+ G + + G +E W +L+ +K Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +L + + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTA---PDLNEEN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752 >gi|299144103|ref|ZP_07037183.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518588|gb|EFI42327.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 843 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 284/913 (31%), Positives = 455/913 (49%), Gaps = 124/913 (13%) Query: 33 KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92 KR+G + FD +KI +AI+KA+ +++ + +++I + LL S I Sbjct: 6 KRDGRLVEFDRNKIEKAILKAYKSLDREPD------ENVINEMACSVENLLLNKFPSNHI 59 Query: 93 VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDG 152 +E+IQD VE +L+++ +++ + Y+LYR + + R I K + D Sbjct: 60 ATVEEIQDLVEITLIENRQYEVVKSYILYRAQHTMNR----------KIIEKFSEYITDN 109 Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212 +I + I + D+ + ++ + +++ A+I ++ L K Sbjct: 110 NVIDI----IRDIQNDFDRTHYDIEQLFLKWNSF--LKKDMTQRQYLLAIIKAAAELTSK 163 Query: 213 E-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 E PN+ ++ARF++ + K+ K + +++ L +EG+ + + Sbjct: 164 ESPNWEYISARFMVYDNNSSIKQNSEKRGIKNFYDKIKTL--------TDEGLYGDYILK 215 Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL 330 + D+ L + RD F Y GL ++ RY + + G+ +E Q FM ++M LA+ Sbjct: 216 EYTEEDINELEVYMDSSRDKLFNYSGLDLIVKRYLIRDSEGNVLENIQEMFMGISMHLAI 275 Query: 331 KE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 E K A + Y++LS+ +TPT+ N+ + QLSSCF+ VPD L GI+ + Sbjct: 276 PEGNNKVSFAKKLYDILSTLKITVATPTMSNARKPYHQLSSCFIDIVPDSLTGIYRTIDN 335 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A ++K+ GG+G + VR G+ I G G + GV+ ++++ NDTAVAV+Q G R+G+V Sbjct: 336 FAQVSKHGGGMGIYFGKVRSQGSDIRGFKGVAGGVVRWIRLTNDTAVAVDQLGVRQGSVA 395 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV 507 YL+ WH D+ EFL LR N GDDR++ HD+ A PDLF + N A W LF P E+ Sbjct: 396 VYLDVWHKDMPEFLQLRTNNGDDRQKAHDVFPAVSYPDLFWRLAKNNIEATWYLFDPHEI 455 Query: 508 SD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 L D YG E+E Y YE + + R IS + R ++ L ETG P+ Sbjct: 456 EQIMGYKLEDYYGDEWEKRY--YECVNNNKLSR--RTISVKDMIRLIIVSLTETGTPFTF 511 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-----------------------AV 599 +D N +P +HVG+++SSNLCTEI N + ET V Sbjct: 512 NRDAANKANPNKHVGMIYSSNLCTEIMQNMKAIETMDTRIEEINKDSYITKVTKAGDFVV 571 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL S+ +L + N D +L + + VR LDNVID+N + + A+ +N +RAIGLG Sbjct: 572 CNLASL-VLGNI--NLEDEKELENIVSITVRALDNVIDLNYYPVPYAEITNQKYRAIGLG 628 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G+ AL I ++S E +E D+ E I++ AI AS E+A+E+GAY F GS W+ G Sbjct: 629 TSGYHHALVQRGIMFSSEEHLEFMDKIYENINYFAIKASSEIAKEKGAYKYFNGSEWESG 688 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + R + + NR W +L++ V+ G+RN+ MAIAPT + + I G S Sbjct: 689 EYF---------RRRDYSSNR-----WKDLQESVRVNGLRNAYLMAIAPTGSTSIIAGTS 734 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 +DP V+ + + E K GSI I R+ Sbjct: 735 AGVDP----------------VMKRYFLEEKK-----------------GSI--IPRVAP 759 Query: 840 DLKKI----HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 L + A E+D W+I +AS RQ+ IDQ QS+NLY+ + + +K+ + A Sbjct: 760 GLNAKTFWNYENAHEVDQDWIIRAASIRQRHIDQGQSVNLYITTDYTMRKILNLLISANE 819 Query: 895 MGLKTTYYLRSRS 907 MG+K+ YY+R +S Sbjct: 820 MGIKSIYYVRGKS 832 >gi|322807125|emb|CBZ04699.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit [Clostridium botulinum H04402 065] Length = 763 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 262/814 (32%), Positives = 410/814 (50%), Gaps = 115/814 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELEVDSRIQFRDGMTTKEIQRTLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKIIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y +Y+ +++ VK +L E ++ D ++ LA + ERD F Y GL++L DR Sbjct: 111 SFGYGDYY-ELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169 Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362 Y + NG +E+PQ FM +AM LA+ E +K+ A +FY+LLS +TPTL N+G Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++++ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537 IPDLFMKR+ + W+LF P V L D + E + N + +R Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDLREFTNKYLECERNTNIPR 409 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595 + + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469 Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + CNL SINL ++ ++ I +R+LDN Sbjct: 470 LEEEIIDGNGYSEIVQRIKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ A Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I +S+ELA+E+G+Y +FK S W+ G + + G +E W +L+ +K Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRN AIAPT + +NI + IDP ++ +++ G FT + +L + + Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTA---PDLNEEN 685 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W I++ + RQK IDQAQS N Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ E K++ +Y ++W G+KT YY+R++S Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752 >gi|320527967|ref|ZP_08029133.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium moorei F0204] gi|320131593|gb|EFW24157.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium moorei F0204] Length = 842 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 296/916 (32%), Positives = 453/916 (49%), Gaps = 130/916 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +++KRNG V +D +KI AI K+F++V K + + D+++ + Q R Sbjct: 8 RIVKRNGQVVPYDGTKIVLAIEKSFLSV--KESVDQAYLSDLLEQIEAQFDGRQE----- 60 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 V +E+IQD VE LM++ + + + Y+LYRE+R+ +R + +K++ Sbjct: 61 ---VDVEEIQDTVEKILMKNEKYNVAKSYILYREKRTQMRNDR---------LELVKLIG 108 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRT 208 D+ LE ++ + D K L E + M +G S D T L SS Sbjct: 109 DE---------ELENVLVDIQKTYPDYDLK-RLYEKFSTMSKEGQSLKDRITLLTRSSAE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE PN+ ++ R L + ++ T K + + ++ + IE+G+ Sbjct: 159 LTTKEEPNWERIAGRLLSYSIASDLRATEEKLGLTSFYQKISYM--------IEQGLYGA 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAM 326 + E+ ++ +A + R+ F Y GL +L RY + + +E PQ ++ +AM Sbjct: 211 YILENYSHKEVDEIATLIDNTRNNLFTYSGLDLLSQRYLIRSHQHVLLESPQEMYIGIAM 270 Query: 327 GLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+KET V+ FY+++S +TPT N+ + QLSSCF+ TVPD L GI+ Sbjct: 271 HLAMKETNNRIGWVKKFYDMMSLHKVTMATPTQANARKPYHQLSSCFIDTVPDSLDGIYH 330 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G VR G I G G S GVI +++V NDTAVAV+Q G R Sbjct: 331 SISNFADVSKFGGGMGMYLGKVRSRGGSIRGFEGASGGVIRWIRVINDTAVAVDQLGVRA 390 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V + N W L Sbjct: 391 GAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVKEDMNQDWYLLD 450 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P +V L D YG+E+E Y +E D K + V R +L + ETG Sbjct: 451 PHDVLMVKGYCLEDFYGEEWEKRY--WECVHDNRISKRVLVLKEVV--RLILKSMVETGT 506 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------E 595 P+ ++D N +P +H G+++SSNLCTEI N S Sbjct: 507 PFAFYRDAVNRANPNKHKGMIYSSNLCTEIAQNMSEVKQISRVIKTEDGDEVIVTTTKPG 566 Query: 596 ETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + VCNL S+ L N N D ++ T VR LDNVID+N + + A+ +N +R Sbjct: 567 DYVVCNLASLCL----GNINVKDPKEIEEVTATVVRALDNVIDLNFYPLPNAQVTNRKYR 622 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +IGLG+ G+ L HI + S E ++ D+ E I++ +I AS LA+ERG+Y F+GS Sbjct: 623 SIGLGVSGYHHMLAKNHIMWESEEHLKFVDKVFENIAYASIKASNTLAKERGSYQYFEGS 682 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + D+ G ++R W ELK+ V GMRN+ +A+APT++ + Sbjct: 683 EWESGAY-FDARGY-----------DSAR--WKELKEEVHATGMRNAYVLAVAPTSSTSI 728 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--G 832 + G S +DP V+N F + E K GSI Sbjct: 729 LIGTSAGLDP----------------VMNRFFLEEKK-----------------GSILPR 755 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + D + TA ID W +++A RQ+ IDQAQS NL++ ++ +L +Y Sbjct: 756 TAPELSADTYWYYKTAHTIDQTWSVKAAGIRQRHIDQAQSFNLWITNDYKMSQLLQLYVL 815 Query: 892 AWLMGLKTTYYLRSRS 907 A+ G+KT YY RS++ Sbjct: 816 AYDCGVKTIYYTRSKA 831 >gi|332022563|gb|EGI62865.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex echinatior] Length = 748 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/740 (31%), Positives = 387/740 (52%), Gaps = 46/740 (6%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +E C GL V + N+ G++ S+L+ ++ T+I + P+YA + +R Sbjct: 29 IEALCYGLDMNYVDPSAIALRVITNLCSGVTTSELDNLAAETAATMINQHPDYATLASRI 88 Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + L +E V+ +Y T+ + + +Y+ + I+ Sbjct: 89 AISNLHKETKKVFSEVIANLYYAKSSITNEHLPIISEKYY-QIIQNNADK---------- 137 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + Y+RDF + Y ++L + L +NG +E PQ MR+A+ + ++ +K Sbjct: 138 ----LNSAILYDRDFNYSYATFKMLESDHLLKLNGKVVERPQHMLMRIAVAIHGEDIDK- 192 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAK 395 +E YN +S +F+ + T+ + T Q++S FL T+ D + GI L+ +L Sbjct: 193 --VIETYNFMSKQYFIYAAQTIDTACTITQQMASTFLLTMSGDSIDGILDTLERFTILCD 250 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 Y+G +G + +R I GT G S G++P LK + + V++ K +G + YLE W Sbjct: 251 YNGEIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKTYDTSIGTVSKNDKNEGPITVYLEPW 310 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFLDL+++ G+++ R M W P+LFMKRV + W+L P E L + +G Sbjct: 311 HSDIFEFLDLKRSIGEEQLRAKGMCYGLWTPNLFMKRVFDDDVWSLMCPHECPGLIEAWG 370 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 EFE Y YE++ + R+I A LW ++ + ETG P+I FKD CN +S QH Sbjct: 371 DEFETLYTKYEQEG-----RFRRQIKARELWLLIIQIQCETGVPYIIFKDHCNYKSNHQH 425 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLD 633 +G + S+ TE+ SSS+E A+CN SI N+ + FD+ KL + LD Sbjct: 426 LGTIKCSSFSTEVVQYSSSDEVAMCNTASIAVNMFVNSTKKVFDFYKLKEIAKIVTHNLD 485 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +ID+N + + +AK S HR+IG+G+ G A L+ P+ S EA E+ + E + + Sbjct: 486 KMIDVNVYPLPEAKLSCDKHRSIGIGVQGLADAFILMRYPFESKEANELNVQIFETLYYG 545 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ AS E+A E+G Y S+K S +G+ D + V+ T+ WD LK ++ Sbjct: 546 ALEASCEIATEKGPYESYKDSPISEGILQFD----MWHVKP------TNLWDWDILKAKI 595 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A A +A + + SI+P N+Y +S ++++ L+ +L ++ Sbjct: 596 AKHGLRNSLLIAQMSDAFMAQMLENNMSIEPYMSNIYTIHALSKQYSIIKPHLLRDLIEK 655 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LWDE M + + ++ GSI NIE IP+DLK ++ T +E+ + E A+ R +IDQ+Q L Sbjct: 656 GLWDENMCNKIIFNGGSIQNIEEIPEDLKLLYKTVWEMPQKTIFEMAASRGPFIDQSQCL 715 Query: 874 NLYLDEPSGKKLDFIYRQAW 893 N+++ +P +KL ++ AW Sbjct: 716 NVHMIDPL-EKLTSMHFFAW 734 >gi|282881359|ref|ZP_06290038.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella timonensis CRIS 5C-B1] gi|281304765|gb|EFA96846.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella timonensis CRIS 5C-B1] Length = 839 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 289/927 (31%), Positives = 457/927 (49%), Gaps = 147/927 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG +D KI+ AI K+F++ + + +I +++++ + T ++ N Sbjct: 1 MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDATI--YQMVQSVEDIVCTNHIKQN- 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145 +E IQD+VE +LM++G++ + ++L+R +R+++R + D I L Sbjct: 58 ------VESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRITEDLQDEHITEVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K + D F K S ++L + Y + G++ ++ ALI Sbjct: 112 KHIAAD-----FTDKEY---------------SILLLIDKYASFSKAGMTATERMDALIK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEY 255 ++ L +E P + + AR L +L + + L ++Y K + T LY Y Sbjct: 152 AAVELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFLTDRN---LYGAY 208 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRI 314 +++ KA + E F + R+ Y GL++L RY + + + + I Sbjct: 209 I---LQQYSKAEI--EQAATF--------MDASRNHLLNYSGLELLIKRYVIRNFDNNPI 255 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E Q F+ +A+ LA+ E + V+ FYN+LS +TPTL N+ QLSSCF+ Sbjct: 256 ESVQEMFLGIALHLAMNEPQDRMMWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFI 315 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD L GI+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ ND Sbjct: 316 DTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVND 375 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K Sbjct: 376 TAVAVDQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMA 435 Query: 494 TQNAG--WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-L 545 +N W +F P+EV +L D YG+E+E Y ++ AD + R+I + + Sbjct: 436 EENLNQDWYMFCPNEVMTAKGYNLEDYYGEEWEKRY--WDCVAD---TTISRRIMPIKEI 490 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------- 598 R +L ETG P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 491 VRLILRSAVETGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTE 550 Query: 599 ----------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 VCNL S++L H D ++ + + VR LDNVID+N + Sbjct: 551 EDDTVVVRTVKPGDFVVCNLASLSL-GHLKLE--DETEMREVVSSVVRALDNVIDLNFYP 607 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + AK +N T+R+IGLG+ G+ AL + I + S E + D+ E I+ AI AS ++A Sbjct: 608 LPFAKITNRTYRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIA 667 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761 +++G+Y F+GS W G E R P W L K+V GMRN+ Sbjct: 668 KQKGSYKYFEGSDWQTG---------------EYFTKRQYTSPEWQALAKKVSQQGMRNA 712 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPT++ + I + +DP V+ F + E K AM+ Sbjct: 713 YLLAIAPTSSTSIIAATTAGVDP----------------VMKRFFLEEKKG------AML 750 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + + D ++ +A+ ID W + +A RQK IDQAQS+NLY+ + Sbjct: 751 PRVA---------PSLSDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNY 801 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + ++L +Y AW G+KT YY+RS+S Sbjct: 802 TMRQLLGLYTLAWHCGVKTIYYIRSKS 828 >gi|15639992|ref|NP_219445.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema pallidum subsp. pallidum str. Nichols] gi|189026231|ref|YP_001934003.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|6093975|sp|O83972|RIR1_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|3323332|gb|AAC65956.1| ribonucleoside-diphosphate reductase, subunit alpha (nrdA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018806|gb|ACD71424.1| ribonucleoside-diphosphate reductase, subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|291060365|gb|ADD73100.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 845 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 295/927 (31%), Positives = 451/927 (48%), Gaps = 141/927 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + +IKRNG + KI AI AF +V+ A V II +L + +L + N+ Sbjct: 1 MHIIKRNGEPQPYMREKIIVAISAAFRSVQNPLAPE---VPAIITDLAAEVERQLFEMNR 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 + + VH+E IQD VE +L + H + ++LYR++R+ R A+ +D+ + L Sbjct: 58 AGVPVHVEKIQDFVEKTLTKYNHSDEVKSFILYRDDRTKKRIAREQIACCFTDSSVLGVL 117 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D ++ L ++SK +L + K + D L LI + Sbjct: 118 KEIQQDFPFPEYS--------------LDALASKFLLFK--KEVTDERRSMQL---LIKA 158 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCRY 259 + L +E P + + AR L+ + T++ K +K T+ E LY Sbjct: 159 AVELTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKITYLEEAGLY------- 211 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 GV R H S + + A L+ RD F Y L ++ RY + +E PQ Sbjct: 212 ---GVYIRT-HYSRAEIEEA--ATYLECSRDKLFTYSSLDMILRRYVIRTRAHVPLETPQ 265 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +A+ LA+ ET+ + V+ FY +LS +TPTL N+ QLSSCF+ TVP Sbjct: 266 EMFLGIALHLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFVDTVP 325 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ + ++K+ GG+G + VR +GA I G G + G++ ++K+ANDTAVA Sbjct: 326 DSLDGIYRSIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLANDTAVA 385 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G R+G+V YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V N Sbjct: 386 VDQLGVRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNL 445 Query: 498 G--WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 G W L P E+ L D Y +E+E Y + + A + R I L R +L Sbjct: 446 GASWYLMCPHEILTVKGYALEDFYAEEWEKRYWDCVKDARISK----RTIPIKELVRLVL 501 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594 + ETG P+ ++D N +P H G+++ SNLCTEI N S+ Sbjct: 502 KSVVETGTPFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKV 561 Query: 595 -------EETAVCNLGSINLLAHFANNQFDYDK-LASTIRTAVRVLDNVIDINCHTIEKA 646 + VCNL S+ L +N DK L +R AVR LDNVID+ + + A Sbjct: 562 VVQTTRPGDFVVCNLASLVL----SNIDLSDDKELREVVRVAVRALDNVIDLTYYPVPYA 617 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + +N +RAIGLG+ G+ L I + S E + AD E I+ AI AS+ +A+E+G Sbjct: 618 QVTNAYYRAIGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKG 677 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 AY F GS W G + G ++E W L++ V T GMRN +A+ Sbjct: 678 AYGCFTGSDWCTGAY-FRKRGYVSE-------------DWQRLQREVATHGMRNGYLLAV 723 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT++ + I G + +DP ++ + + E K M+ Sbjct: 724 APTSSTSIIAGTTAGVDP----------------IMKQYFLEEKK-------GML----- 755 Query: 827 HDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEP 880 + R+ L + ++ +A ++ W I +A RQ+ IDQAQS+NLY+ D Sbjct: 756 -------MPRVAPSLSQKTCPLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFT 808 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + LD +Y AW +G+K+ YY+RS+S Sbjct: 809 LKQVLD-LYVYAWEVGMKSLYYVRSQS 834 >gi|196247936|ref|ZP_03146638.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. G11MC16] gi|196212720|gb|EDY07477.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. G11MC16] Length = 760 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 261/812 (32%), Positives = 398/812 (49%), Gaps = 111/812 (13%) Query: 147 IMMDD-GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL------- 198 I++DD G S + + ++E+A +G +S L E + ++ LS + Sbjct: 8 IVVDDQGKEKSLSRREFAALIEQATAGFVRLS----LEEYEERVWQLLSRKEFVTVDQLY 63 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 +TA++ + E+EP + V AR L + Y++ + ++ + Y +++ Sbjct: 64 QTAILEGLSYISEEEPEWTFVCARLYLRMM--------YREAARQRGYDARERYGDFYSL 115 Query: 259 YI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314 + E+GV + LL E ++ + L ++D F Y+GL+ L DRY R+ Sbjct: 116 IVSLTEQGVYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLY 175 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E+PQ F+ +AM L + E K + + E Y LS+ + +TPTL N+G + QLSSCF Sbjct: 176 ELPQERFLIIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCF 235 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + TV D L I+ + + A L+K GG+G +R G+ I G G S GVIP++K N Sbjct: 236 VDTVDDSLQAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLN 295 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 +TAV+V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++ Sbjct: 296 NTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQ 355 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKI 540 V Q W LF P EV + ++F Y+ + RG + K+ Sbjct: 356 VEQRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVNEPRLSKEKV 409 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597 A+ + + ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S T Sbjct: 410 PAIEVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQ 469 Query: 598 ----------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 VCNL SINL + L I +R+LDNVID+N Sbjct: 470 YVKDGTIIIEKIPGDFVVCNLSSINLARAVTDG-----VLERLIPIQLRMLDNVIDLNNI 524 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A +N +RA+GLG G+ L L I + S EAV DE E I++ I AS+EL Sbjct: 525 PVLQASLTNKKYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLVIQASMEL 584 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G+Y F GS W G + + WD LK+ V GMRN Sbjct: 585 AKEKGSYPGFSGSDWQTGAY-----------FERRGYKNHGERDWDRLKREVARYGMRNG 633 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 MA+AP A+ + I G + SIDP ++ +Y + V V +L ++ W Sbjct: 634 YLMAVAPNASTSIIAGSTASIDPIFRKVYAEEKKDYKIPVT----VPDLNEQTTW----- 684 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880 + +A+ ID W I + RQ IDQA S N Y ++ Sbjct: 685 ----------------------YYKSAYYIDQRWSIRQNAARQHHIDQAISFNFYVMNTI 722 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 K+L ++ AW GLKTTYY+RS S T E Sbjct: 723 KAKELLELHLTAWKSGLKTTYYVRSTSGTMEE 754 >gi|312112172|ref|YP_003990488.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus sp. Y4.1MC1] gi|311217273|gb|ADP75877.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 761 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 255/757 (33%), Positives = 378/757 (49%), Gaps = 100/757 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D LS + LI + I E EP + V AR L+KL YK+ K +E + Sbjct: 56 DTLSTEQITNYLILEGLSYISETEPEWTFVCARIYLQKL--------YKEAAKQRGYEAK 107 Query: 250 CLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 Y + + +GV + L ++ L + ++D F Y+GL+ L DRY Sbjct: 108 QRYGSLYALITALVSKGVYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYL 167 Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT 363 + + E+PQ F+ +AM L KE + + A+ E Y LS+ + +TPTL N+G Sbjct: 168 ARDYHRNLYELPQERFLIIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGK 227 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + QLSSCF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S G Sbjct: 228 SYGQLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSG 287 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++K N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD+ T Sbjct: 288 VIPWMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGV 347 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-------- 535 IPDLFM++V + W LF P EV + ++F Y+ + RG + Sbjct: 348 CIPDLFMEQVEKRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVQ 401 Query: 536 ----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 K+ A+ + + ++ E+G P++ ++D N ++P H+G+++ SNLCTEI N Sbjct: 402 EERLSKEKVPAIEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQN 461 Query: 592 SSSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 S + VCNL SINL + D L I +R+L Sbjct: 462 QSPTIVEKQYTKDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLISIQMRML 516 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID+N + +A+ +N +RA+GLG G+ L L I + S EAVE AD+ E I++ Sbjct: 517 DNVIDLNHIPVLQAQLTNQKYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAY 576 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 AI +S+ELA+E+G+Y +F GS W G + ++ R WD LKK+ Sbjct: 577 LAIRSSMELAKEKGSYPAFPGSDWQTGAY-----------FEKRGYRRNDNADWDTLKKQ 625 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V GMRN MAIAP A+ + I G + SIDP + +Y + V V +L Sbjct: 626 VAKYGMRNGYLMAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNA 681 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 W + +A+ ID W I+ + RQ+ IDQA S Sbjct: 682 ETTW---------------------------YYKSAYHIDQHWSIKQNAVRQRHIDQAIS 714 Query: 873 LNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 N Y ++ K+L ++ AW GLKTTYY+RS S+ Sbjct: 715 FNFYVMNTIKAKELLDLHLTAWKAGLKTTYYVRSTSS 751 >gi|160915702|ref|ZP_02077910.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991] gi|158432178|gb|EDP10467.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991] Length = 835 Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust. Identities = 293/921 (31%), Positives = 457/921 (49%), Gaps = 139/921 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ--DIIKNLTEQTVTRLLQH 86 + ++KR+G + SF KI A+ KAF + + + + +I+ L+E + Sbjct: 1 MNIVKRDGSIQSFHEEKIKDAMRKAFRSTQLPIEEEQLHIMAVEIVSQLSEGS------- 53 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146 +EDIQD+VE +LM+ + ++ + Y+LYR +RS+ R A + ++ Sbjct: 54 -------RVEDIQDKVEEALMKHSYFQVAKNYILYRSKRSEQRKA---------LKSLVE 97 Query: 147 IMMDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + D+G F K +M V + + L + + L ET SE +E LI Sbjct: 98 EVQDEGLKEVFFHIQKDFDMEVYDMSALLTKL--RTFLKETMN------SEQRMEM-LIR 148 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCRYIEE 262 +S +I K+ P + + AR ++ ++ + + + + ++ L E Y+ YI E Sbjct: 149 ASVEMISKDAPKWEYIAARLFAYRMHNDIAARMQQLGIQDFYGKLAYLTKEGYYGSYILE 208 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321 + D+ L L+ ERD F Y GL+++ RY + N +E PQ F Sbjct: 209 NYTQK---------DIAELEAYLQDERDQLFTYSGLELVVKRYLMRAHNHDILETPQEMF 259 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA+ E E+ A + Y++LSS +TPT+ N+ + QLSSCF+ V D L Sbjct: 260 MGIAMHLAIPEQERVVWAKKIYDVLSSLKATMATPTMSNARRPYHQLSSCFIDCVDDSLM 319 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ +++ A ++KY GG+G + VR G+ I G G + G+I ++K+ NDTA AV+Q Sbjct: 320 NIYKSIENFAQVSKYGGGMGLYFGKVRASGSDIRGYEGAAGGIIRWIKLVNDTATAVDQL 379 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGW 499 G R+GAV YL+ WH D+ EFL+LR N GDDR + HD+ A PDLF M + NA W Sbjct: 380 GVRQGAVAVYLDVWHKDLPEFLNLRTNNGDDRMKAHDIFPALCYPDLFWRMAKEDLNATW 439 Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 L P E+ L D YG+E+E Y +E D K R++ + R +L Sbjct: 440 YLMCPHEIHKTMGYHLEDYYGEEWEKRY--FECVNDPRISK--REMLLKDIVRLILKSAV 495 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591 ETG P+ +D N +P H G+++ SNLCTEI N Sbjct: 496 ETGTPFAFNRDHVNRMNPNGHEGMIYCSNLCTEIAQNMKPLELLEKEIVEVDGESIVVER 555 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 S + E VCNL S+ L N +L IR VR LDNVID+N + + AK +N Sbjct: 556 SKAGEFVVCNLASLTLGNLDVQND---SELREVIRVLVRALDNVIDLNYYPLSYAKITNR 612 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+ G+ L + + S E + D E I+++A+ AS +LA+E+G+Y+ F Sbjct: 613 RYRPIGLGVSGYHHMLAKQGLRFESEEHLAFVDTLFEKINYYALEASSDLAKEKGSYACF 672 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 +GS + G + D + E W L+K+VK G+RN MA+APT++ Sbjct: 673 EGSDYATGSY-FDKRSYVDE-------------KWWNLRKQVKENGLRNGYLMAVAPTSS 718 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G S +DP ++N + + E K GS+ Sbjct: 719 TSIISGTSAGVDP----------------IMNKYFLEEKK-----------------GSM 745 Query: 832 GNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 I R+ DL ++ A ID W++ +A RQ+ IDQAQS+NLY+ +E + +K+ Sbjct: 746 --ITRVAPDLSPATFWLYKQAHLIDQSWIVRAAGVRQRHIDQAQSVNLYITNEFTLRKVL 803 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y +AW G+KT YY+RS+S Sbjct: 804 NLYIEAWEQGVKTIYYIRSKS 824 >gi|307564964|ref|ZP_07627481.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella amnii CRIS 21A-A] gi|307346277|gb|EFN91597.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella amnii CRIS 21A-A] Length = 839 Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust. Identities = 289/925 (31%), Positives = 455/925 (49%), Gaps = 143/925 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-----VQDIIKNLTEQTVTRL 83 + + KR+G + ++ PSKI AI K+F++ E G + I V+ IK T++ Sbjct: 1 MNITKRDGSIEAYTPSKIIIAISKSFISTENTGHQKEIEEMALEVECFIKENTDKR---- 56 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143 +E IQD+VE +LM+ G + Y+L+R +R++ R + Sbjct: 57 ----------DVESIQDRVEKTLMKHGFFDEAKSYILFRWQRNEQRKYIKN--------- 97 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK----IVLSETYKNMYDGL-SESD 197 I+FN E +E+ +G+ QD S +LS+ + + L ++ + Sbjct: 98 -----------IAFNIGDNE--IEKVLNGIRQDFRSAEYSVTLLSDKFMSFSKPLMTQKE 144 Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 ALI ++ L E P + + R L ++ R + V +K ++ ++ Sbjct: 145 KMNALIKAAVELTTAECPKWEMIAGRLLSFQINRNI-DEVERKLGISSFYDK-------- 195 Query: 257 CRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314 RY+ +EG+ + E+ D+ + + R++ F Y GL +L RY + +I Sbjct: 196 IRYLTDEGLYGGYILENYSKEDIAWAEKRMDNSRNYLFNYSGLDLLSKRYLIRTFDHKII 255 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E Q +M +A+ LA+ E E V + Y+LLS +TPTL N+ QLSSCF+ Sbjct: 256 ERIQEMYMGIALHLAMPEKENRLSWVGKIYDLLSKLEVTMATPTLSNARKPSHQLSSCFI 315 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD L GI+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ ND Sbjct: 316 DTVPDSLIGIYRSIDNFAQVSKFGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVND 375 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Sbjct: 376 TAVAVDQLGMRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMA 435 Query: 494 TQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 QN W LF P+E+ L D YG+E+E +Y+ D + R IS L Sbjct: 436 EQNLDQNWVLFCPNEILRVKGYALEDFYGEEWE---RHYQECIDDTRLSR-RVISIKDLI 491 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------ 594 R +L ETG P+ +D N +P H G+++ SNLCTEI N ++ Sbjct: 492 RLILRSAVETGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAAIEEISQEVKTEN 551 Query: 595 -----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 E VCNL S++L D D + I T VR LDNVID+N + + Sbjct: 552 GDKVVVTTVKPGEFVVCNLASLSLGRLPLE---DKDAMCDKINTVVRALDNVIDLNFYPV 608 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 AK +NH +R+IGLG+ G+ AL I + S +E DE E I++ AI AS ++A+ Sbjct: 609 PFAKITNHRYRSIGLGVSGYHHALAKRGIKWESDRHLEFMDEVFETINYAAIKASSDIAK 668 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G+Y F GS W G + + RD R+ + W L+++V+T GMRN+ Sbjct: 669 EKGSYEYFNGSDWQTGAY--------FKKRD----YRSDK--WKHLQEKVQTQGMRNAYL 714 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +A+APT++ + + G + +DP Q +++ V EL + W Sbjct: 715 LAVAPTSSTSILAGTTAGLDPIMQRFFLEEKKGAILPRV----APELSDKTYW------- 763 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 ++ A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + Sbjct: 764 --------------------MYKGAYYINQQWSVRASGIRQRHIDQAQSMNLYITNDYTM 803 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y AW G+KT YY+RS+S Sbjct: 804 RQVLNLYLLAWKCGVKTIYYVRSKS 828 >gi|258648773|ref|ZP_05736242.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella tannerae ATCC 51259] gi|260851103|gb|EEX70972.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella tannerae ATCC 51259] Length = 844 Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust. Identities = 285/924 (30%), Positives = 449/924 (48%), Gaps = 142/924 (15%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G + ++ SKI A+ AF ++ + ++ + +I + ++ + N+S Sbjct: 5 IIKRDGTIENYKASKIGDAVSAAFASIGEVCPAEAL--ETLIAAIEKEL--EGIAENRS- 59 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 V +E IQD VE LM++G ++ R ++LYREER+ RA + + + +++ D Sbjct: 60 --VRVEQIQDNVEIELMRAGFYRQARRFILYREERAKDRAYINEIEQTVGLEGMHRLLKD 117 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL--ETALIFSSRT 208 ++ C + SK Y + + E L +R Sbjct: 118 -----------VQRDYPHLCKSFGKLVSK----------YHAFHKPSMTAEEGLHALTRA 156 Query: 209 LIE----KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 +E +EP++ V R L + ++ +K ++Q LY + EG Sbjct: 157 AVECITAEEPDWEFVAGR--LYSFQNDL-----NIRRKMEGLQLQSLYDK-LSYLTTEGY 208 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY----FLHINGSRIEMPQAF 320 + ES ++ L+ ERD Y GL +L RY F+H ++E PQ Sbjct: 209 YGAYILESYTKAEIDLAETFLQPERDRLLTYSGLDLLLRRYTVRNFVH---EQLETPQEM 265 Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 ++ +A+ LA++ET+ V FY++LS +TPTL N+ H Q+SSCF+ TV D Sbjct: 266 YLGIALHLAMRETQNRMDHVRAFYDMLSKQQVSMATPTLANARKPHHQMSSCFIDTVDDS 325 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+ Sbjct: 326 LEGIYRSIANFANVSKFGGGMGLYFGKVRANGSDIRGYKGAAGGVIRWIKLANDTAVAVD 385 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497 Q G R GAV YL+ WH D+ +FL LR N GDDR + HD+ A PDLF K+V + + Sbjct: 386 QLGVRSGAVACYLDVWHKDILDFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKKVREGLDQ 445 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W L P E+ L D YG E+E Y + A + +V K L R +L Sbjct: 446 SWYLMCPHEIQTIKGYALEDSYGDEWEQRYNDCVNDARITKTEVLLK----DLIRLILKS 501 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597 ETG P+ F+D N +P +H G+++SSNLC EI N S ++ Sbjct: 502 AIETGTPFAFFRDHVNRMNPNKHKGIIYSSNLCVEIAQNMSPIQSVQIETMKTPEGDDII 561 Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRT---AVRVLDNVIDINCHTIEK 645 VCNL S+ + ++ ++D A R AVR LDNVID+N + +E Sbjct: 562 VEKTKAGDFVVCNLASLVV------SKINFDDEAEVKRVVYAAVRALDNVIDLNYYPLEY 615 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+ +N +R IGLG+MG+ L I + S +E AD+ ME I+++AI AS+ELA+E+ Sbjct: 616 ARVTNRRYRPIGLGIMGYHHYLAQQGIVWESEAHLEAADKLMEKINYYAIRASMELAKEK 675 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y F+GS W G D + + W L V G+RN +A Sbjct: 676 GHYEYFEGSDWQTG--------------DYFSRRQYESADWQALAADVAQAGVRNGYLLA 721 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPT++ + I G + DP V+N + + E K Sbjct: 722 IAPTSSTSIIAGTTAGTDP----------------VMNRYFLEEKK-------------- 751 Query: 826 YHDGSIGNIE-RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 +I + + D ++ +A ID W I +A RQ+ +DQAQS+NLY+ ++ + + Sbjct: 752 --GATIARVAPSLSDKTWWLYKSAHTIDQTWSIRAAGVRQRHVDQAQSVNLYITNDFTLR 809 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ +Y +AW G+KT YY+RS+S Sbjct: 810 QVLNLYIKAWECGMKTIYYVRSKS 833 >gi|295401052|ref|ZP_06811026.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294976845|gb|EFG52449.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 761 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 255/757 (33%), Positives = 378/757 (49%), Gaps = 100/757 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D LS + LI + I E EP + V AR L+KL YK+ K +E + Sbjct: 56 DTLSTEQITNYLILEGLSYISETEPEWTFVCARIYLQKL--------YKEAAKQRGYEAK 107 Query: 250 CLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 Y + + +GV + L ++ L + ++D F Y+GL+ L DRY Sbjct: 108 QRYGSLYALITALVSKGVYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYL 167 Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT 363 + + E+PQ F+ +AM L KE + + A+ E Y LS+ + +TPTL N+G Sbjct: 168 ARDYHRNLYELPQERFLIIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGK 227 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + QLSSCF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S G Sbjct: 228 SYGQLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSG 287 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++K N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD+ T Sbjct: 288 VIPWMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGV 347 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-------- 535 IPDLFM++V + W LF P EV + ++F Y+ + RG + Sbjct: 348 CIPDLFMEQVEKRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVQ 401 Query: 536 ----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 K+ A+ + + ++ E+G P++ ++D N ++P H+G+++ SNLCTEI N Sbjct: 402 EERLSKEKVPAIEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQN 461 Query: 592 SSSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 S + VCNL SINL + D L I +R+L Sbjct: 462 QSPTIVEKQYTKDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRML 516 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID+N + +A+ +N +RA+GLG G+ L L I + S EAVE AD+ E I++ Sbjct: 517 DNVIDLNHIPVLQAQLTNQKYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAY 576 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 AI +S+ELA+E+G+Y +F GS W G + ++ R WD LKK+ Sbjct: 577 LAIRSSMELAKEKGSYPAFPGSDWQTGAY-----------FEKRGYRRNDNADWDTLKKQ 625 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V GMRN MAIAP A+ + I G + SIDP + +Y + V V +L Sbjct: 626 VAKYGMRNGYLMAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNA 681 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 W + +A+ ID W I+ + RQ+ IDQA S Sbjct: 682 ETTW---------------------------YYKSAYHIDQHWSIKQNAVRQRHIDQAIS 714 Query: 873 LNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 N Y ++ K+L ++ AW GLKTTYY+RS S+ Sbjct: 715 FNFYVVNTIKAKELLDLHLTAWKAGLKTTYYVRSTSS 751 >gi|323343337|ref|ZP_08083564.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella oralis ATCC 33269] gi|323095156|gb|EFZ37730.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella oralis ATCC 33269] Length = 838 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 291/930 (31%), Positives = 460/930 (49%), Gaps = 154/930 (16%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG V +D KI+ AI K+F++ A + I E + N Sbjct: 1 MEITKRNGSVEHYDKEKIATAIRKSFISTGNSVADTELYA---IVGAVENVI------NT 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145 A ++E IQD+VE LM+ G + + Y+L+R +R++ R A + D IA L Sbjct: 52 HADRRNVESIQDEVERKLMEKGFYNEAKSYILFRWKRTEQRKALNAIAEEIGDTAIAGIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD--GLSESDLETALI 203 K + +D + S+ G+ +S K N + G++E + +ALI Sbjct: 112 KGIAND----FYGSE----------YGISALSEKF-------NSFSRAGMNEDNKLSALI 150 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLT--------TVYKKPQKATHHEMQCLYPE 254 ++ + E P++ + AR +L +++ T ++Y+K + T + LY + Sbjct: 151 KAAVEMTTAEAPDWEFIAARLASYQLNKDISTFEETEGIHSLYEKLRYLTDEK---LYGD 207 Query: 255 YFCR-YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 Y + Y EE ++ A+ + ER+ Y G+ +L RY + R Sbjct: 208 YILKAYSEE--------------EIAEAASFIVPERNNLLNYSGIDLLIKRYLMRTYSHR 253 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 IE Q F+ +A+ LA+ E+ +R V +FY++LS +TPTL N+ QLS Sbjct: 254 PIESVQEMFLGIALHLAM--NERHRRMVWVRKFYDMLSLLQVTMATPTLSNARKPFHQLS 311 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF+ TVPD L GIF +L A ++K+ GG+G + VR G I G G + GVI ++K Sbjct: 312 SCFIDTVPDSLEGIFRSLDNFAQVSKFGGGMGLYFGKVRAAGRKIRGFKGAAGGVIRWMK 371 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ A PDLF Sbjct: 372 LVNDTAVAVDQLGMRQGAAAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLF 431 Query: 490 MKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + + N W +F P+E+ L D YG+E+E + Y D ++++ R++ + Sbjct: 432 WRMAEEDINQQWYMFCPNEIISVKGYSLEDYYGEEWE---KRYRECVD--DLRISRRVMS 486 Query: 543 VA-LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA--- 598 + + R +L ETG P+ +D N +P H G+++ SNLCTEI N S ET Sbjct: 487 IKDIVRLVLRSAVETGTPFTFNRDIVNRTNPNAHRGIIYCSNLCTEIAQNMSEIETVANE 546 Query: 599 --------------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 VCNL S++L H D K+ + + T VR LDNVID+ Sbjct: 547 IRTEEGDTVVVRAAKPGDFVVCNLASLSL-GHLPLE--DDGKMKNIVSTVVRALDNVIDL 603 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + A+ +NH +R+IGLG+ G+ AL + I + S +E D+ E I+ AI AS Sbjct: 604 NFYPLHYARITNHRYRSIGLGVSGYHHALAVRGIKWESERHLEFMDQVFERINRAAIEAS 663 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 +LA E+GAY+ F GS W G + G +++ W ++ ++ GM Sbjct: 664 ADLAAEKGAYTYFDGSDWKTGKY-FTKRGYMSK-------------EWQQIARKAAQ-GM 708 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN+ +AIAPT++ + I G + +DP V+ F + E K Sbjct: 709 RNAYLLAIAPTSSTSIIAGTTAGVDP----------------VMKRFFLEEKKG------ 746 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 AM+ + + D + A+ ID W + +A RQK +DQ+QS+NLY+ Sbjct: 747 AMLPRVA---------PNLSDKTYWAYKGAYLIDQKWSMRAAGIRQKHLDQSQSVNLYIT 797 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +E + +++ +Y AW G+KT YY+RS+S Sbjct: 798 NEYTMRQVLDLYLLAWKSGVKTLYYVRSKS 827 >gi|212697416|ref|ZP_03305544.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM 7454] gi|212675608|gb|EEB35215.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM 7454] Length = 805 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 276/854 (32%), Positives = 424/854 (49%), Gaps = 118/854 (13%) Query: 92 IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151 +V +E+IQD VE L+++ ++K + Y+LYR + + D + + +DD Sbjct: 21 VVTVEEIQDLVELELIENNYYKEVKSYILYRAKHN----------MDRKVLTDFESYIDD 70 Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211 +S ++ I EE + + S + E++ +++ L ALI ++ L Sbjct: 71 DYTLSI----IKDINEEYDNQRYPIESLYLKFESFTKA--NMTKEALLNALIKAASELTS 124 Query: 212 KE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 KE P++ + ARF++ + ++ + K ++Q L G+ + Sbjct: 125 KEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL--------TSVGLYGAYIL 176 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLA 329 ES + DL L LK ER+ F Y GL ++ RY + G IE Q FM ++M LA Sbjct: 177 ESYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISMHLA 236 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 + E ++ A + Y++LS +TPT+ N+ QLSSCF+ TVPD L GI+ ++ Sbjct: 237 IGEKDRVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRSITN 296 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A ++K+ GG+G + VR G+ I G + GVI ++K+ANDTAVAV+Q G R+GAV Sbjct: 297 FAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKLANDTAVAVDQLGVRQGAVA 356 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV 507 YL+ WH D+ EFL LR N GDDR + HD+ A +PDLF K N G W +F P EV Sbjct: 357 CYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFWKECRDNIGGDWYMFDPHEV 416 Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + D YG+EFE E Y + EI R I+ L R ++ ETG P++ Sbjct: 417 LVKYGKSIEDTYGEEFE---EFYHKLVKDKEISK-RVIAIKDLIRLLIKSWTETGTPFVF 472 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------------------- 599 +D N +P +H G+++SSNLCTEI N S ET Sbjct: 473 NRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIKTVDGETVIVNTTKPGDFVE 532 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL S+ L N++ + +++ STI VR LDNVID+N + AK +N +RAIGLG Sbjct: 533 CNLASLTLGNIDVNDKEELEEVVSTI---VRALDNVIDLNYYPTPYAKVTNKKYRAIGLG 589 Query: 660 LMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ L I ++ EA +E D E I++ AI AS E+A+E+G+YS F+GS WD Sbjct: 590 TSGYHHMLVKNDIKWSEEEAHLEFVDRVYEDINYFAIKASNEIAKEKGSYSCFEGSDWDN 649 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + W++LK +V G+RN +AIAPT + + I G Sbjct: 650 GNY--------------FKQRGYESQRWEKLKDQVHKNGLRNGYLLAIAPTGSTSIISGT 695 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S +DP ++N + + E K G+I + R+ Sbjct: 696 SAGVDP----------------IMNKYFLEEKK-----------------GAI--VPRVA 720 Query: 839 DDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 L ++ A+ ID + + RQ+ IDQAQS+N+Y+ E + +++ IY AW Sbjct: 721 PGLNTKTFWLYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAW 780 Query: 894 LMGLKTTYYLRSRS 907 G+K+ YY+R +S Sbjct: 781 EAGVKSLYYVRGKS 794 >gi|229816570|ref|ZP_04446869.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM 13280] gi|229807905|gb|EEP43708.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM 13280] Length = 913 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 302/942 (32%), Positives = 449/942 (47%), Gaps = 116/942 (12%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAF-------MAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 + KR+G FD +KI A+ +AF A G A + + E + + Sbjct: 12 IKKRDGRSERFDGAKIVEAMRRAFEDVADEQAAARGLIAGHGASAPAVSADELEALLASI 71 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-----AQSHSKSD 138 Q + +E +QD VE +LM+ GH ++ + Y+LYR ER++ RA A++ + D Sbjct: 72 EQAMDRDAVDCVEGVQDLVERALMERGHFEVAKSYILYRHERAEKRAVRVELARAVAGLD 131 Query: 139 APIA----------PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYK 187 IA P + L+ + D + + +LS ++ Sbjct: 132 GEIACEEGRAAAGVPSAADDDTAAAPKDHLAVELDRTLARIQRDFDDPAYDLAMLSARFR 191 Query: 188 NMYDGLSESDLET-ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245 + ++D ALI ++ L +E P + + AR L R + AT Sbjct: 192 ALTGAGQDADARLGALIRAAVELTSQEAPRWEMIAARLLDLSFMRHL---------AATR 242 Query: 246 HEMQCLYPEYFCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 E+ RY+ E G+ + S +L A + ERD F Y GL +L R Sbjct: 243 RELGIASFGELVRYLTERGLYGDYILASYSVSELEEAAAFMVSERDELFAYSGLDLLISR 302 Query: 305 YFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNS 361 Y + + + +E PQ F+ +A+ LA+ E ++ A FY++LS +TPTL N+ Sbjct: 303 YVIRAHDHTPLESPQEMFLGIALHLAMNEEPTQRLAWVKRFYDMLSKLEVTMATPTLSNA 362 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 QLSSCF+ TVPD L GI+ ++ A ++KY GG+G VR G I G G + Sbjct: 363 RKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYLGKVRATGGSIRGFEGVA 422 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 GVI +++V NDTAVAV+Q G R+GAV YL+ WH D+ EFL+LR N GDDR + HD+ Sbjct: 423 GGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLNLRTNNGDDRMKAHDVFP 482 Query: 482 ANWIPDLF--MKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEI 534 A PDLF M + + W L P ++ L D YG E+E Y + AD Sbjct: 483 AVCYPDLFWRMAEESLDQDWHLMCPHDILQVKGYALEDFYGDEWERRYRDC--VADPRIS 540 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K R+I L R +L ETG P+ +D N +P H GV++ SNLCTEI N+S+ Sbjct: 541 K--RRILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNGHEGVIYCSNLCTEIAQNTSA 598 Query: 595 EET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 E VCNL S++L D + + I TAVR Sbjct: 599 IEEVTREVVTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE---DDEVMGHVIETAVRA 655 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + + A+ +NH +R+IGLG+ G+ L I + S + + ADE E I+ Sbjct: 656 LDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGISWESEDHLAFADEVFERIN 715 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLPW 746 +HAI AS LA+ERGAY F+GS W G + S G +AEVR E AM W Sbjct: 716 YHAIRASERLAEERGAYGLFEGSDWQTGAYFAKRGYCSSSGEVAEVR-EGAMGSER---W 771 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL + V G+RN+ +AIAPT++ + + G + IDP + +++ V Sbjct: 772 GELAEAVARNGVRNAYLLAIAPTSSTSILSGTTPGIDPIMRKFFLEEKKGSMLPRV---- 827 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 EL R W + A I+ W + +A RQ+ Sbjct: 828 APELSPRTYW---------------------------YYKPAHYIEQTWSVRAAGVRQRH 860 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 IDQAQS+NLY+ ++ + +++ +Y +AW G+KT YY+RS+S Sbjct: 861 IDQAQSMNLYITNDYTLRQVLRLYLEAWRRGVKTIYYVRSKS 902 >gi|255008713|ref|ZP_05280839.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis 3_1_12] gi|313146448|ref|ZP_07808641.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis 3_1_12] gi|313135215|gb|EFR52575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis 3_1_12] Length = 838 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 295/923 (31%), Positives = 451/923 (48%), Gaps = 140/923 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG ++ KI+ AI K+F AS V D +TV ++ + Sbjct: 1 MQIIKRNGATEPYNREKIAVAIRKSF-------ASTGREVPD-------ETVYTIVDEVE 46 Query: 89 SALI--VH--IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPI 141 L VH +E IQD+VE SLM+ G + + Y+LYR +R++ R A +H S + Sbjct: 47 LFLCDEVHRSVEQIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKAFNHIVSSIGSEAL 106 Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLE 199 A LK + D + S ++L+E + N+ D +E L Sbjct: 107 ADTLKDIQKDFVANEY--------------------SLVILAEKFVNLCKTDMTAEERLT 146 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY-FCR 258 T + + ++ P++ + AR +L +++ E+ +Y Y R Sbjct: 147 TLIKAAVELTSQEAPDWEFIAARLFNFQLTQKL----------KVQAEIAGIYSFYDKLR 196 Query: 259 YI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316 Y+ +EG+ + + ++ A + ERD F Y GL +L RY + + +E Sbjct: 197 YLTDEGLYGDYILSAYSPREIEVAAGFMCPERDKLFNYSGLDLLAKRYLIRTHSHEPMES 256 Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ +A+ L + E ++ + +FY++LS +TPTL N+ + QLSSCF+ T Sbjct: 257 VQEMYLGIALHLGMSEKCDRLQWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDT 316 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD L GI+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTA Sbjct: 317 VPDSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTA 376 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRV 493 VAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF M + Sbjct: 377 VAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKE 436 Query: 494 TQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 N W LF P+E+ + L D YG+E+E Y + + R ++ + R Sbjct: 437 DLNQQWYLFCPNEIMNVKGYCLEDYYGEEWEQKYLD----CINDPLLSKRVLNIKDIVRL 492 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 +L ETG P+ +D N +P H G+++ SNLCTEI N SS ET Sbjct: 493 ILRSAVETGTPFTFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSSIETVSTEVRTEGGD 552 Query: 598 ------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 VCNL S++ L H D ++ I VR LDNVID+N + I Sbjct: 553 TVVVNTVRPGDFVVCNLASLS-LGHLPLE--DERQMKEKIAVVVRALDNVIDLNFYPIPF 609 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+ +NH +R+IGLG+ G+ AL L I + S E ++ D+ E I++ AI AS LA+E+ Sbjct: 610 ARITNHRYRSIGLGVSGYHHALALRGIRWESVEHLDFIDKVFECINYAAIEASAGLAKEK 669 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y F+GS W G + A L W +L +V GMRN+ +A Sbjct: 670 GRYVYFEGSDWQTGAY--------------FAKRGYDSLQWKDLAAKVAADGMRNAYLLA 715 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPT++ + I G + DP V+ F + E K AM+ + Sbjct: 716 IAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA 753 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 + D ++ A+ ID W I +A RQ IDQAQSLNLY+ ++ + ++ Sbjct: 754 ---------PSLSDKTYWLYKGAYRIDQTWSIRAAGIRQLHIDQAQSLNLYITNDFTMRQ 804 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907 + +Y AW G+KT YY+RS+S Sbjct: 805 VLNLYLLAWECGVKTVYYVRSKS 827 >gi|257792031|ref|YP_003182637.1| ribonucleotide-diphosphate reductase subunit alpha [Eggerthella lenta DSM 2243] gi|257475928|gb|ACV56248.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella lenta DSM 2243] Length = 845 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 294/924 (31%), Positives = 444/924 (48%), Gaps = 135/924 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+ KRNG V +++ KI RA+ AF +V K L ++ RL+ + Sbjct: 1 MQISKRNGTVEAYEAGKIKRAMGAAFASVG--------------KVLDDEEADRLIARIE 46 Query: 89 SALI---------VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139 A+ V +ED+QD VE +LM++ H++ + Y+LYRE+R+ R A+ + Sbjct: 47 RAMASAEQGEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRVARERLCAQL 106 Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 P P L G L S E EE L +S+K S + DG L Sbjct: 107 PSVPALP-----GVLASVQK---EFPGEE--YELAHLSAKF-QSFAKPDAADG----QLL 151 Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 L+ ++ L +E P + + AR L+ + R + + A H E + + Sbjct: 152 AMLVKAAVELTTQEAPRWEIIAARLLMVQFDRALAERL-----AARHIET---FAQKVAF 203 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317 EEG+ + + +L A + R+ F Y GLQ+L DRY + + G+ +E P Sbjct: 204 LTEEGLYGDYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESP 263 Query: 318 QAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q F+ +A+ LA++E E+ FY++LS+ +TPTL N+ QLSSCF+ T Sbjct: 264 QEMFLGIALHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDT 323 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD L GI+ ++ A ++KY GG+G + VR G+ I G +G + GVI ++++ANDTA Sbjct: 324 VPDSLDGIYRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTA 383 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F ++ Sbjct: 384 VAVDQLGMRQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARD 443 Query: 496 N--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 N W L P E+ L D YG+E+ Y E AD IK R I + R Sbjct: 444 NIEGDWYLMCPHEILTVKGYALEDCYGEEWTRKY--LECVAD-ARIKK-RAIPIKDVIRL 499 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 ++ ETG P+ +D N +P +H G+++ SNLCTEI N + E Sbjct: 500 IIKSAVETGTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGE 559 Query: 598 ------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 VCNL S++ L H + D +LA +AVR LDNVID+N + Sbjct: 560 QVVVTVTKPGAFVVCNLASLS-LGHI--DMDDPHELAHVTESAVRALDNVIDLNFFPVPY 616 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+ +N +R IGLG+ G+ L I + S E + A+ + + A+ AS +A+E+ Sbjct: 617 AEINNRQYRPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREK 676 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 GAY F+GS W G + RD L R W EL + V G+RN + Sbjct: 677 GAYGFFEGSGWQTGEY----------FRDRGLTDGR-----WAELARDVAEHGLRNGYLL 721 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A+APT++ + I G + +DP +++ +G V EL W Sbjct: 722 AVAPTSSTSIIAGTTAGLDPVMNRYFLEEKKNGLMPRV----APELSMDTFW-------- 769 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 + A ID W + + RQ+ IDQAQS+NLY+ +E + + Sbjct: 770 -------------------YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYITNEYTFR 810 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ +Y AW G+KT YY+RS+S Sbjct: 811 RVLDLYLLAWEEGVKTIYYVRSKS 834 >gi|160947323|ref|ZP_02094490.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270] gi|158446457|gb|EDP23452.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270] Length = 854 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 298/939 (31%), Positives = 460/939 (48%), Gaps = 150/939 (15%) Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78 Y F E I +++IKR+ SFD SKI AI KAF++V + + K L E+ Sbjct: 5 GYKFAEVIL-LRIIKRDLSEVSFDISKIENAIYKAFISVGDEDKKL------LSKRLAEE 57 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR----AAQSH 134 +LQ + +E+IQD VE +L ++ H++ + Y+LYRE+R+ +R + + + Sbjct: 58 VFESILQDKAENSSISVEEIQDYVEKTLTKNNHYETLKSYILYREKRNSLRKELNSFREY 117 Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG-LQDVSSKIVLSETYKNMYDGL 193 + ++ I KI D F+++ E+ + C L V L+E + Sbjct: 118 IEDESLIEVLAKIQKD------FSTEGYEL--DRLCRKFLSFVKPNSTLNEKIE------ 163 Query: 194 SESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 LI +S L KE PN+ ++AR K+ E++ Y+K Sbjct: 164 -------LLIKASSELTSKENPNWEYISARIYAYKIHNEIVN--YEKEWHIVD------- 207 Query: 253 PEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 F I+ KA L E +++ D+ L + RD F Y L ++Y RY + Sbjct: 208 ---FKSKIQVLTKASLYGEYILENYSSDDIDELEKYIDNSRDELFTYSSLDLVYKRYLIC 264 Query: 309 INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 + + IE Q FM +AM LA+ E ++ A + Y++LS+ +TPT+ N+ Q Sbjct: 265 DSHKKVIETMQEMFMGIAMHLAIPEKDRVSFAKKVYDVLSNLKATVATPTMSNARKPFHQ 324 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ TVPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI + Sbjct: 325 LSSCFIDTVPDTLKGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRW 384 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ANDTAVAV+Q G R+G+ YL+ WH D+ EFL+LR N GDDR + HD+ A P+ Sbjct: 385 IKLANDTAVAVDQLGVRQGSCAVYLDVWHRDIPEFLNLRTNNGDDRMKAHDVFPAICFPN 444 Query: 488 LFMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYE--NYERQADRGEIKVFR 538 LF + +N + W LF P EV + L D YG+E+E Y E + D+ R Sbjct: 445 LFWRLAKENINSNWYLFCPHEVKEVMGFCLEDFYGEEWEEKYRLCIKEPRLDK------R 498 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------- 591 ++ L + +L ETG P+I +D N +P H G+++SSNLCTEI N Sbjct: 499 ILTVKDLVKLILKSQVETGTPFIFNRDNANNANPNSHKGMIYSSNLCTEIMQNMKEILDV 558 Query: 592 ----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 + + VCNL S+ L N +++ + T +R LDNV Sbjct: 559 EDKILQIDGEDHVVTDVKAGDFVVCNLASLVLGNIDLKND---EEMEFVVSTMIRALDNV 615 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID+N + AK +N +RAIGLG G+ AL I + + E +E D+ E I++ AI Sbjct: 616 IDLNYYPTPFAKITNAKYRAIGLGTSGYHHALVKNKIMWQTEEHLEFMDKVYEKINYFAI 675 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 S ++ +E+G+Y F+GS W G + E RD + W ELK++V Sbjct: 676 KESSKIGEEKGSYKYFEGSEWQNGKY--------FEKRD------YNSKEWIELKEKVSK 721 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RN+ +A+APT + + I G + +DP V+ + + E K Sbjct: 722 NGLRNAYLLAVAPTGSTSIIAGTTAGVDP----------------VMMRYFLEEKK---- 761 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQ 871 GSI I R+ DL ++ A E+D W I++ RQ+ IDQ Q Sbjct: 762 -------------GSI--IPRVAPDLTPETFWLYENAHEVDQTWSIKAGGVRQRHIDQGQ 806 Query: 872 SLNLYLDEPSGKKLDFIYRQAWL---MGLKTTYYLRSRS 907 SLNLY+ + K+ I + L +GLK+ YY+RS+S Sbjct: 807 SLNLYI--TTDYKMSQILKLLILSCEVGLKSIYYIRSKS 843 >gi|253567023|ref|ZP_04844474.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_2_5] gi|251944147|gb|EES84656.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_2_5] Length = 839 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 293/921 (31%), Positives = 453/921 (49%), Gaps = 135/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F A G+ S +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + + D + L Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204 K + D T + S +VL E + + S+ ALI Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262 ++ L +E P++ + AR L +L + K ++A ++ Y + RY+ EE Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318 G+ + + ++ A + +RD F Y GL +L RY + +R+ P Q Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ +A+ LA+ E ++ V+ FY+LLS +TPTL N+ + QLSSCF+ TVP Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVP 319 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVA Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMVKEDL 439 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N W LF P+E+ L D YG+E+E Y + + R IS + R +L Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N ++ ET Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++ L H D +++ + T VR LDNVID+N + + A+ Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGR 672 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G + + W+ L RV GMRN+ +AIA Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAARVAENGMRNAYLLAIA 718 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + DP V+ F + E K AM+ + Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 + D ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828 >gi|229495846|ref|ZP_04389572.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas endodontalis ATCC 35406] gi|229317159|gb|EEN83066.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas endodontalis ATCC 35406] Length = 834 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 286/919 (31%), Positives = 438/919 (47%), Gaps = 140/919 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRN V SF KI A+ +AF A E + + L E +T + Sbjct: 1 MKIIKRNKQVESFSVEKIKNALRRAFRATETRVTPAELNA------LCESILTEI----G 50 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S V +E +QD VE LM SG++K+ + Y+LYR + S+ R + + + Sbjct: 51 SPEAVEVEMVQDIVETRLMASGYYKVAKAYILYRTKHSEAR----------EVINRFRHY 100 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE-SDLETALIFSSR 207 + D +IS + E Q + L Y Y E ++ L ++ Sbjct: 101 IADEEVISLLKELQE----------QYTGAAYALDLLYAKFYAFYKEGAEPLQMLTKAAV 150 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 LI E P + + ARFL +LR+ + K + +++ L EEG+ Sbjct: 151 ELITPEAPKWEFIAARFLGLELRKGLEKVEEKYHLSGFYAKIKFL--------TEEGLYG 202 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325 R + E ++ LA + R Y L ++ RY +H + I E PQ FM +A Sbjct: 203 RYILEHYTKEEIDELAKVIDNSRSNLLTYSSLHLIAKRYLIHSSDHIILESPQEMFMGIA 262 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LA+ E + + A + Y++LS +TPT+ N+ QLSSCF+ +PD+L GI+ Sbjct: 263 MHLAMPERHRVQWATKIYDILSQLKVTMATPTMSNARKPLSQLSSCFIDVMPDNLIGIYR 322 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + A ++KY GG+G VR +G+ I G G + GV+ ++K+ANDTA+AV+Q G R+ Sbjct: 323 TIDNFAQVSKYGGGMGIYLGKVRAVGSDIRGFKGVAGGVLKWVKLANDTAIAVDQLGVRQ 382 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 G+V YL+ WH D+ EFL +R N GDDR + HD+ IPDLF +++ + N+ W + Sbjct: 383 GSVALYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGVCIPDLFWQQLEEDPNSTWYMLC 442 Query: 504 PDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P EV L D +G E+ Y R+ + R I+ + R ++ ETG Sbjct: 443 PHEVLSVKGYALEDYWGDEWTRRY----RECLQDSRLAKRPIAIKDMLRLIIKSAVETGT 498 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595 P+I +D N +P H G+V+ SNLC+EI + S + Sbjct: 499 PFIFNRDTVNRMNPNGHCGIVYCSNLCSEIAQSQSEIRLKQQTVVLEEGEEVVIEKTIAG 558 Query: 596 ETAVCNLGSINLLAHFANNQFDYD---KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + VCNL S+ L D + +L T+ T VR LDNVID+N + I A+ +N Sbjct: 559 DFVVCNLASLVL------GNIDTESATELRDTVHTIVRALDNVIDLNFYPIPYAEITNLK 612 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R IGLG G+ L I + S E + D+ E I+++AI AS LA E+G Y+ F Sbjct: 613 MRPIGLGSSGYHHLLAKRGIAWESQEHLSFMDKLYEQINYYAIEASSLLAAEKGQYARFA 672 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + A + W +L +V +GMRN+ MAIAPT++ Sbjct: 673 GSDWQTGQY--------------FAKRNYTSERWQKLAAQVAELGMRNAYLMAIAPTSST 718 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + IDP ++N F + E K GSI Sbjct: 719 SIIAGTTAGIDP----------------IMNRFFLEEKK-----------------GSI- 744 Query: 833 NIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLD 886 + R+ DL ++ TA +ID W++++A RQ+ +DQ+QS+NLY+ D G D Sbjct: 745 -VPRVAPDLSDETFWLYKTAHQIDQKWVVDAAGIRQRHLDQSQSVNLYITQDITFGGIRD 803 Query: 887 FIYRQAWLMGLKTTYYLRS 905 +Y +AW G+KT YY+RS Sbjct: 804 -LYLRAWHEGVKTLYYIRS 821 >gi|282860354|ref|ZP_06269422.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella bivia JCVIHMP010] gi|282586852|gb|EFB92089.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella bivia JCVIHMP010] Length = 839 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 288/920 (31%), Positives = 447/920 (48%), Gaps = 133/920 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QV KR+G + ++ SKI AI K+F + E G + I + V L+ N Sbjct: 1 MQVTKRDGSIENYTQSKIIAAIGKSFASTENLGHQKEIEEMAL-------EVENFLKENT 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +E+IQD+VE +LM G + Y+L+R +R++ R + Sbjct: 54 SKR--DVENIQDKVEKTLMAHGFFDEAKSYILFRWQRNEQRKYIKN-------------- 97 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVS----SKIVLSETYKNMYDGL-SESDLETAL 202 I+FN E +E+ +G+ QD S +LS+ + + L ++ + AL Sbjct: 98 ------IAFNIGDNE--IEKVLNGIRQDFRGAEYSVTLLSDKFMSFSKPLMTQKEKLNAL 149 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI- 260 + ++ L E P + + R L +L R + V +K ++ +E RY+ Sbjct: 150 VKAAVELTTAECPQWEMIAGRLLSFQLNRSI-DEVERKLGLSSFYEK--------LRYLT 200 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 +EG+ + E D++ + R+ F Y GL +L RY +H + IE Q Sbjct: 201 DEGLYGTYILEHYSQEDIMAAEKKMDTSRNHLFNYSGLDLLSKRYLIHTFDHKVIERVQE 260 Query: 320 FFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M +A+ LA+ E E V + Y+LLS +TPTL N+ H QLSSCF+ TVPD Sbjct: 261 MYMGIALHLAIPEKENRMEWVGKIYDLLSQLEVTMATPTLSNARKPHHQLSSCFIDTVPD 320 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV Sbjct: 321 SLIGIYRSIDNFAQVSKHGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAV 380 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496 +Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Q + Sbjct: 381 DQLGMRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQSLD 440 Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 WTLF P+E+ L D YG+E+E Y+ A R IS L R +L Sbjct: 441 QNWTLFCPNEILRVKGYALEDFYGEEWERRYQECINDARLSR----RVISIKDLVRLILR 496 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N ++ E Sbjct: 497 SAVETGTPFTFNRDIVNRANPNNHKGIIYCSNLCTEIAQNMAAIEEVSQEVKTENGDKVV 556 Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S++L D + + + T VR LDNVID+N + + A+ Sbjct: 557 ITTVKPGDFVVCNLASLSLGRLPLE---DKEAMCDKVATVVRALDNVIDLNFYPVPYAEI 613 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +NH +R+IGLG+ G+ AL I + S +E +E E I++ AI AS +A+E+G+Y Sbjct: 614 TNHRYRSIGLGVSGYHHALAKRGIKWESDRHLEFMNEVFETINYAAIKASSAIAKEKGSY 673 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G + + RD + W +L+ V GMRN+ +A+AP Sbjct: 674 EYFEGSDWQTGAY--------FKKRD------YNSEAWQQLQAHVAQQGMRNAYLLAVAP 719 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + + G + +DP Q +++ V EL + W Sbjct: 720 TSSTSILAGTTAGLDPIMQRFFLEEKKGAMLPRV----APELSDKTYW------------ 763 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 ++ A+ I+ W I ++ RQ+ IDQAQS+NLY+ ++ + +++ Sbjct: 764 ---------------MYKGAYYINQQWSIRASGIRQRHIDQAQSMNLYITNDYTMRQVLN 808 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 LYLLAWKSGVKTIYYVRSKS 828 >gi|289450489|ref|YP_003474450.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185036|gb|ADC91461.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 844 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 281/918 (30%), Positives = 446/918 (48%), Gaps = 128/918 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG + +F +KI+ A+ KAF G + I ++K LTE+ + Sbjct: 1 MKIEKRNGQIETFRSAKITAAMAKAF-----DGLNVPINDDQLLK-LTEKVEKLINTEVA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + ++ +E +QD VE LMQ G++++ + Y+LYR ER+ R + + +K Sbjct: 55 NGYVLKVERVQDLVEKILMQEGYYEVAKSYILYRSERAQKRTMRRQ------LTELVKFQ 108 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207 D TL S D S +L + + Y + + LI ++ Sbjct: 109 GLDETLRSIQKDYK-----------SDNYSLDLLLAKFNSFYKLDMPFQEAMRMLIKAAV 157 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVK 265 L +E P + + AR ++ ++ ++ + +++ LY + Y+E EG+ Sbjct: 158 ELTTQEAPAWEFIAARLMMLQINEQI-------GEVCKQFKLRNLYDK--ISYLENEGLY 208 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 R + +S ++ + + ER+ Y GL +L RY +H IE PQ F+ + Sbjct: 209 GRYILQSYSKEEIATAESFIVEERNKLLNYSGLDLLCKRYVIHNYRHQIIETPQEMFLGI 268 Query: 325 AMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 A+ LA+ E ++R +FY++LS +TPTL N+ + QLSSCF+ TVPD L Sbjct: 269 ALHLAMHEKNGDERMGWVRKFYDMLSQLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLE 328 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ ++ A ++K+ GG+G + VR +G+ I G G + GVI ++K+ANDTAVAV+Q Sbjct: 329 GIYRSITNFAQVSKFGGGMGLYFGKVRAIGSSIRGFQGVAGGVIRWVKLANDTAVAVDQL 388 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGW 499 G R+G+V YL+ WH DV EFL +R N GDDR + HD+ A PDLF ++V N + W Sbjct: 389 GMRQGSVACYLDIWHKDVPEFLQVRTNNGDDRMKAHDIFPAICYPDLFWRQVRDNINSSW 448 Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 L P EV L D YG+E+E Y + R + R+I L R +L Sbjct: 449 YLLCPHEVLTVKGYALEDYYGEEWEKRYLDCVRDNRISK----REIPLKELVRLILKSCV 504 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------EE 596 ETG P+ +D N +P +H G+++ SNLCTEI N S E Sbjct: 505 ETGTPFTFNRDIVNRNNPNKHKGIIYCSNLCTEICQNMSEIKQVSLELKDENGDTVVVET 564 Query: 597 T-----AVCNLGSINLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 T VCNL S+ L + D ++L S + T VR LDNVID+N + + AK Sbjct: 565 TKPGDFVVCNLASLAL------GRIDMKRPEELESIVGTVVRALDNVIDLNFYPLPYAKH 618 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +R++GLG+ G+ L I + S E ++ D+ E I++ AI S+ELA+E+G Y Sbjct: 619 TNKAYRSLGLGISGYHHMLAKNGIAWESEEHLQFVDKIFERINYAAIKTSMELAKEKGKY 678 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G + + + W L V G+RN+ +AIAP Sbjct: 679 KYFEGSDWATGEY--------------FTLRNYTDEKWQSLASAVAKNGLRNAYLIAIAP 724 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + +DP + +++ V+ + EL W Sbjct: 725 TSSTSIIAGTTAGLDPVMKRYFLEEKKG----VIMPRVAPELSLNTYW------------ 768 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887 ++ A ID W + +A RQ+ IDQAQSLNLY+ + + +++ Sbjct: 769 ---------------LYKEAHLIDQEWTVRAAGVRQRHIDQAQSLNLYVTQNLTFRQILG 813 Query: 888 IYRQAWLMGLKTTYYLRS 905 + +AW G+KT YY RS Sbjct: 814 YFIKAWENGVKTIYYCRS 831 >gi|23100544|ref|NP_694011.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacillus iheyensis HTE831] gi|22778777|dbj|BAC15045.1| ribonucleoside-diphosphate reductase alpha subunit [Oceanobacillus iheyensis HTE831] Length = 744 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 256/754 (33%), Positives = 375/754 (49%), Gaps = 104/754 (13%) Query: 194 SESDLETALI-FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 SE+ LE ALI + + E PN+ AR +EKL RE Q Y Sbjct: 44 SEAKLEDALINVALENMDEATPNWGFAAARIYVEKLYREA---------SNNRGYTQGSY 94 Query: 253 PEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 ++ + E+G+ L + D+ ++ ERD F YLG+ + RY Sbjct: 95 GSFYALLEQLTEKGIYTPALLQKYTKEDIEEFGKAIQPERDQLFNYLGIYTVATRYLATD 154 Query: 310 NGSRI-EMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 + + E+PQ +M +AM + E ++++ +E Y LS+ + +TPTL N+G H Sbjct: 155 HEKNVYELPQERWMVIAMHIMQDEPADQRQENVLEAYWALSNLYMTVATPTLTNAGKTHG 214 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSCF+ TV D L I+ + + A L+K GG+G +R G+ I G G S GV+P Sbjct: 215 QLSSCFIDTVDDSLQSIYDSNSDIAKLSKNGGGIGVYMGKIRARGSSIKGFKGMSSGVVP 274 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++K N+TAV+V+Q G RKGA+ YL+ WH D+E FLDL+ N GDDR R HD+ T +P Sbjct: 275 WIKQLNNTAVSVDQLGTRKGAIAIYLDVWHQDIESFLDLKLNNGDDRMRAHDIFTGVCLP 334 Query: 487 DLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKV 536 D FM++V W LF P EV L D Y ++ F YE + E Sbjct: 335 DYFMEQVENRGDWYLFDPHEVRQVMGYSLEDFYDEQKGSGSFRTRYE----ECIANEALS 390 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--- 593 RK+ A+ + ++++ E+G P++ ++D N ++ H G+++ SNLCTEIT N S Sbjct: 391 KRKVPAIEIMKRLMKSQLESGTPFMFYRDEVNRQNANAHEGLIYCSNLCTEITQNQSPTE 450 Query: 594 -----------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 S + VCNL S+NL N D L I VR+LDNVI Sbjct: 451 FVEEFLENENTIVKKFKSGDYVVCNLSSVNLGRAVKN-----DVLERLIPIQVRMLDNVI 505 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN I++A+ +N +RAIGLG G+ L L I + S EAV ADE E I++ I Sbjct: 506 DINTLPIKQAEITNRKYRAIGLGTFGWHHLLALKGIAWESDEAVAYADELYEKIAYLTIQ 565 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 +S+EL++E+G Y ++GS W G + D G WDELK VK Sbjct: 566 SSMELSKEKGHYPVYEGSKWQTGEY-FDQKGYTGN-------------KWDELKAEVKQH 611 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GMRN MA+AP +T A I G + SIDP +Q Y + +++D Sbjct: 612 GMRNGYLMAVAPNSTTAMIAGSTASIDPIFQVFYYE------------------EKKDFK 653 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +L +H ++ +A+ +D + ++ ++RQK IDQ+ S N Y Sbjct: 654 IPVTAPELDHHTYNV------------YRRSAYIVDQRFSVKQNAKRQKHIDQSISFNFY 701 Query: 877 LDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907 + P+ K + + QAW GLKTTYY+RS S Sbjct: 702 V--PNTIKASVLLDLHTQAWREGLKTTYYVRSTS 733 >gi|265764335|ref|ZP_06092903.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides sp. 2_1_16] gi|263256943|gb|EEZ28289.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides sp. 2_1_16] Length = 839 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 291/921 (31%), Positives = 452/921 (49%), Gaps = 135/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F A G+ S +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + + D + L Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204 K + D T + S +VL E + + S+ ALI Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262 ++ L +E P++ + AR L +L + K ++A ++ Y + RY+ EE Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318 G+ + + ++ A + +RD F Y GL +L RY + +R+ P Q Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ +A+ LA+ E ++ V+ FY+LLS +TPTL N+ + QLSSCF+ TVP Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVP 319 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVA Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K + Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDL 439 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N W LF P+E+ L D YG+E+E Y + + R IS + R +L Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N ++ ET Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++ L H D +++ + T VR LDNVID+N + + A+ Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASTDLAKEKGR 672 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G + + W+ L +V GMRN+ +AIA Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIA 718 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + DP V+ F + E K AM+ + Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 + D ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828 >gi|53713985|ref|YP_099977.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis YCH46] gi|60682186|ref|YP_212330.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis NCTC 9343] gi|52216850|dbj|BAD49443.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides fragilis YCH46] gi|60493620|emb|CAH08409.1| putative ribonucleoside-diphosphate reductase alpha chain [Bacteroides fragilis NCTC 9343] Length = 839 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 291/921 (31%), Positives = 452/921 (49%), Gaps = 135/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F A G+ S +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + + D + L Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204 K + D T + S +VL E + + S+ ALI Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262 ++ L +E P++ + AR L +L + K ++A ++ Y + RY+ EE Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318 G+ + + ++ A + +RD F Y GL +L RY + +R+ P Q Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ +A+ LA+ E ++ V+ FY+LLS +TPTL N+ + QLSSCF+ TVP Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVP 319 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVA Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K + Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDL 439 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N W LF P+E+ L D YG+E+E Y + + R IS + R +L Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N ++ ET Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++ L H D +++ + T VR LDNVID+N + + A+ Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGR 672 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G + + W+ L +V GMRN+ +AIA Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIA 718 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + DP V+ F + E K AM+ + Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 + D ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828 >gi|306819884|ref|ZP_07453538.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552131|gb|EFM40068.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 852 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 286/922 (31%), Positives = 442/922 (47%), Gaps = 134/922 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAV-----EGKGASRSIRVQDIIKNLTEQTVTRL 83 + +IKR+G + FD +KI AI KAF++V E K S V++ KN + T Sbjct: 11 LNIIKRSGQIVPFDTNKIKIAIKKAFISVGMEIEEEKLNKLSSDVEEKSKNNFPKDHT-- 68 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143 V +E++QD VE +L++ G++ + + Y+LYR ++R Sbjct: 69 ---------VSVEEVQDLVEITLIEKGYYAVVKSYILYRASHHNLRKT----------LE 109 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + DD + K E E+A L + SK S +NM S + + LI Sbjct: 110 DFTLYFDDEKIFKLMRKIQEDFKEDAYK-LSFLYSKFT-SFAKENM----SYDEKLSMLI 163 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L KE P + ++ RFL ++ Q E L F I Sbjct: 164 RAACELTSKEAPKWEYISGRFLALQI------------QNTIEKETTMLDIHSFADKIRY 211 Query: 263 GVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317 K +L M++ D+ L L Y RD F Y GL ++ RY + +G +E P Sbjct: 212 LTKNKLYGPYMLENYSQEDIEELEKYLDYSRDELFNYSGLNLVAKRYLIRDTDGKILESP 271 Query: 318 QAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q FM +AM L++ E +K+ A + Y+ LS+ +TPT+ N+ QLSSCF+ V Sbjct: 272 QEMFMGIAMHLSIPEKDKKIHYAKKLYDALSTLKVTMATPTMSNARKCFNQLSSCFIDVV 331 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD+L GI+ ++ A ++K+ GG+G + VR +G+ I G G + G+ ++K+ANDTAV Sbjct: 332 PDNLDGIYRSVTNFAQVSKHGGGMGLYFGKVRAMGSDIRGFKGVAGGITRWVKLANDTAV 391 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495 AV+Q G R+GA Y++ WH D EFL LR N GDDR + HD+ +P+ F K + Sbjct: 392 AVDQLGVRQGACSVYIDLWHKDTPEFLQLRTNNGDDRMKAHDVFPGICVPNYFWKLAKED 451 Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 N+ W + P E+ L D YG E+E Y + + + + R IS + R + Sbjct: 452 LNSPWYMMCPHEIETVKGYCLEDCYGDEWEEKYLDCVKDSKIDK----RVISVKDMVRLI 507 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSE-------- 595 + ETG P+I +D N +P H G+++ SNLCTEI N SSE Sbjct: 508 IKSAVETGTPFIFNRDIVNKYNPNPHKGMIYCSNLCTEIAQNMEAIQSISSEVKIIDGQE 567 Query: 596 ---------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + VCNL S+ L N D+L + T +R LDNVID+N + + A Sbjct: 568 IVVEMTKPGDFVVCNLASLVLGNIDVKNP---DELEDIVNTVIRALDNVIDLNYYPVPYA 624 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + +N +RAIGLG G+ L I + S E ++ ADE E I++ AI AS +LA+E+G Sbjct: 625 QITNQKYRAIGLGTSGYHHTLVQNDIMFQSEEHLKFADELYENINYFAIKASNQLAKEKG 684 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 +Y F+GS W G + + W+ELK+ V+ G+RN MAI Sbjct: 685 SYKYFEGSNWQDGQY--------------FTKRNYNSKRWEELKQSVEKDGIRNGYIMAI 730 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT + + I G + ++DP + +++ + + L + W Sbjct: 731 APTGSTSIIAGTTAAVDPVMKRYFLEEKKGQ----IVPRVAPSLTPKTFW---------- 776 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 ++ A +ID W+I+SA RQ+ IDQ+QS+NLY+ E + K++ Sbjct: 777 -----------------LYENAHDIDQTWVIKSAGIRQRHIDQSQSVNLYITTEYTMKQI 819 Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907 +Y A +KT YY+RS+S Sbjct: 820 LQLYITACEQEVKTLYYVRSKS 841 >gi|326792203|ref|YP_004310024.1| ribonucleoside-diphosphate reductase, subunit alpha [Clostridium lentocellum DSM 5427] gi|326542967|gb|ADZ84826.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium lentocellum DSM 5427] Length = 763 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 258/815 (31%), Positives = 402/815 (49%), Gaps = 107/815 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++I DG L + + + +VE AC L + + D ++ +++ LI Sbjct: 3 IEIRKRDGRLEPLCASKTKKMVEFACRNLAGCDPIELELDAKIQFRDKMTTREIQKVLI- 61 Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +T IEK N+ V AR L+ L +E + + + + Sbjct: 62 --QTAIEKVIQTNEDAYGNQVKQTYINWQYVAARLLVYDLYKEA--AISRGYTHFGYGDY 117 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 + LY E I G+ L + D ++ LA + ERD F Y G+++L DRY + Sbjct: 118 KALYEEL----IHRGLYGDYLKMNYTDTEVEELAAYINPERDDLFNYEGIKLLADRYLVK 173 Query: 309 -INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 G +E+PQ FM +AM LA+ E EK A +FY+LLS +TPTL N+GT Sbjct: 174 GYKGEVMELPQERFMTIAMHLAIPEGEKRVYYAKQFYDLLSQLKMTVATPTLANAGTAFY 233 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSCF++TV D+L+ I+ Q+ A ++K+ G LG VR L + I G S GVIP Sbjct: 234 QLSSCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYLGKVRALNSEIRGHKRSSGGVIP 293 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++++ NDTAVAV+Q G+RKG+ L+ WH D+ +FL+L+ N GDDRR+ HD+ + IP Sbjct: 294 WVRLYNDTAVAVDQLGRRKGSASVTLDVWHSDLYDFLELKTNNGDDRRKAHDIFPSISIP 353 Query: 487 DLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 DLFM+R+ + W+LF P V L D + E + A+ + E I Sbjct: 354 DLFMERLLKRENWSLFDPYMVHKEMGFYLEDYFDDEEDKAFTTRYLACEANEKLERITIP 413 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----- 596 + + +K++ ETG P+I F+D N +P +H+G++++SNLC EI N S+ E Sbjct: 414 TLDIMKKIMISAVETGTPFIFFRDTVNRANPNKHLGMIYASNLCHEIAQNMSASELIAEG 473 Query: 597 ------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 CNL S NL + + ++ I +R+LDNVI + Sbjct: 474 TKEVNGEMEVYSRIKPGDMVTCNLNSTNL------GRVEREEFKDIIPLQIRMLDNVITL 527 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N +++A+ ++ +RAIGLG G+ L HI + S E +++ADE E +++ AI S Sbjct: 528 NQLPVKEAQLTSDRYRAIGLGTSGYHHYLVNHHISWESEEHLKVADELFEDMAYEAIRGS 587 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 +ELA+E+GAY F+GS W GV+ + W +LK+ V G+ Sbjct: 588 MELAKEKGAYPGFEGSEWQTGVY--------------FERRGYTSPRWQKLKEEVAKYGL 633 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN MA+APT + +NI + IDP ++ +++ G FT + +L + W Sbjct: 634 RNGYIMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKAA---PDLCAENFW-- 687 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ A I+ W I++ RQ+ IDQAQS NLY+ Sbjct: 688 -------------------------LYKEAHHINQSWSIKACGIRQRHIDQAQSFNLYVT 722 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K + +Y AW G+KT YY+R++S + E Sbjct: 723 PEVKAKDILQMYIDAWQEGVKTLYYVRNQSLETDE 757 >gi|15290502|gb|AAK92209.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides fragilis 638R] gi|301163664|emb|CBW23218.1| putative ribonucleoside-diphosphate reductase alpha chain [Bacteroides fragilis 638R] Length = 839 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 290/921 (31%), Positives = 452/921 (49%), Gaps = 135/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F A G+ S +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + + D + L Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204 K + D T + S +VL E + + S+ ALI Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262 ++ L +E P++ + AR L +L + K ++A ++ Y + RY+ EE Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318 G+ + + ++ A + +RD F Y GL +L RY + +R+ P Q Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ +A+ LA+ E ++ V+ FY+LLS +TPTL N+ + QLSSCF+ T+P Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTIP 319 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVA Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K + Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDL 439 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N W LF P+E+ L D YG+E+E Y + + R IS + R +L Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N ++ ET Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++ L H D +++ + T VR LDNVID+N + + A+ Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGR 672 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G + + W+ L +V GMRN+ +AIA Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIA 718 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + DP V+ F + E K AM+ + Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 + D ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828 >gi|332297026|ref|YP_004438948.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema brennaborense DSM 12168] gi|332180129|gb|AEE15817.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema brennaborense DSM 12168] Length = 844 Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust. Identities = 286/920 (31%), Positives = 437/920 (47%), Gaps = 128/920 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR G ++D KI AI KAF K R D+ + +T + + Sbjct: 1 MEIIKRTGKTETYDGQKIINAITKAF-----KSTGR-----DVPQTTLRALLTSVEEKLD 50 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +E IQD VE +LM+S + Y+L+R++RS+ RAA+ Sbjct: 51 RETVKSVEKIQDLVEQALMESLFFAEAKSYILFRQKRSEFRAARK--------------- 95 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ-----DVSSKIVLSETYKNMY-DGLSESDLETAL 202 + LI +S E +E+ SG+Q + S LS Y + + ++ES+ AL Sbjct: 96 -ELCALIRVDSGEGETPLEKVFSGIQKSYQDESYSLKTLSAKYVSFSKENMNESERLAAL 154 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ L+ E P + + R L R + + K+ + +++ L E Sbjct: 155 IRAASELVSPEAPKWEFIAGRLLNYSFRHRLRADTERLGLKSFYDKLEYL--------TE 206 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAF 320 G+ + +S ++ A + ERD F Y GL +L RY + +E PQ Sbjct: 207 AGMYGSYILKSYTKAEIEEAAAFIVPERDDLFTYSGLDLLLKRYVIRTGKHVPLETPQEM 266 Query: 321 FMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+ +A+ LA+ E E+ FY++LS +TPTL N+ + QLSSCF+ TVPD Sbjct: 267 FLGIALHLAMNEPAERMNWVRRFYDMLSRMEVTMATPTLANARKPYHQLSSCFVDTVPDS 326 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ ++ A ++K+ GG+G + VR G+ I G G + G+I ++++ NDTAVAV+ Sbjct: 327 LNGIYRSIDNFAKVSKFGGGMGMYFGKVRAAGSAIRGFEGAAGGIIRWIRLVNDTAVAVD 386 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--A 497 Q G R GAV YL+ WH D+ EFL++R N GDDR + HD+ PDLF K +N Sbjct: 387 QLGVRAGAVAVYLDAWHRDLPEFLNIRTNNGDDRMKAHDVFPGVCYPDLFWKMAKENLDQ 446 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W L P E+ L D +G+E+E Y + + R +S + R +L Sbjct: 447 DWYLMCPHEICTVKGYHLEDFWGEEWEKRYADCVHDNRIAK----RAVSVKDIVRLVLKS 502 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597 ETG P++ +D N +P H G+++ SNLCTEI N S E+ Sbjct: 503 AVETGTPFVFNRDTVNRANPNAHRGMIYCSNLCTEIAQNMSGIESVSTQITVQNGETVVV 562 Query: 598 --------AVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S++L N D L S +RTAVR LDNVID+N + + A+ Sbjct: 563 HTTKPGSFVVCNLASLSL----GNLPLEDTAYLQSVVRTAVRALDNVIDLNFYPVPYAEI 618 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +R IGLG+ G+ AL I + S E + AD E I+ A+ AS + A E+GAY Sbjct: 619 TNRAYRPIGLGVSGWHHALAKRAIKWESDEHLAFADRVFETINRAAVEASSDNAAEKGAY 678 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 S F GS W G + A W L ++V+ GMRN+ +A+AP Sbjct: 679 SCFDGSDWQTGAY--------------FAKRGYDSAEWRALAQKVRAQGMRNAYLLAVAP 724 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + IDP + +++ T EL W Sbjct: 725 TSSTSIIAGTTPGIDPVMKRWFLEEKKGYMLTRT----APELGPETWW------------ 768 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 + A +ID W I S RQ+ IDQAQS+NLY+ +E + +++ Sbjct: 769 ---------------YYKNAHQIDQKWSIRSCGIRQRHIDQAQSMNLYITNEYTMRQVLD 813 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+K+ YY+RS+S Sbjct: 814 LYLLAWECGVKSVYYVRSKS 833 >gi|118442856|ref|YP_878439.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium novyi NT] gi|118133312|gb|ABK60356.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium novyi NT] Length = 764 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 252/811 (31%), Positives = 400/811 (49%), Gaps = 108/811 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ +G ++ + +V AC GL + ++ +G+S +++ LI Sbjct: 3 IKVRKRNGEYEKLCVEKTKKMVSLACEGLDGCDPLELEIDSRIQFRNGMSTKEIQKILI- 61 Query: 205 SSRTLIEK-----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 +T IEK N+ V AR L L +E K + H Sbjct: 62 --QTAIEKVIYIDKNNYDNSPSKKTNINWQYVAARLLAFDLYKEA------KINRNYSHF 113 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 + + + G+ + L E+ D ++ L+ ++ +RD F Y GL++L DRY + Sbjct: 114 GYGDFLSLVKKLVNMGLYGKYLIENYSDEEIKELSEYIEPKRDELFNYEGLKLLNDRYLI 173 Query: 308 H-INGSRIEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRH 365 NG +E+PQ FM +AM LA+ E + A +FY+L+S +TPTL N+GT Sbjct: 174 KGFNGEILELPQERFMVIAMHLAIPEGKNRVYFAKKFYDLMSKLKMTVATPTLGNAGTPF 233 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GVI Sbjct: 234 YQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVI 293 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P++K+ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ T+ I Sbjct: 294 PWIKLYNDTAVAVDQLGKRKGGASITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSI 353 Query: 486 PDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 PD+FMKR+ W+LF P + L D + E + + + E + Sbjct: 354 PDIFMKRLLNRENWSLFDPYTIQKLMGYKLEDYFDDEENKEFTKRYLECEANENLPRDTV 413 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596 S + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S E Sbjct: 414 SCLDVMKKIMKSAVETGAPFIFFRDTVNRANPNKHKGMIYSSNLCHEIAQNMSESELISE 473 Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 CNL SINL ++ D+L +I +R+LDNVI Sbjct: 474 EVTDKNGFNEVVSRIKSGDMVTCNLNSINL------SKVSRDELKESIPLQIRMLDNVIS 527 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N ++++ ++ +RAIGLG G+ L I + S E ++ D E I++ AI A Sbjct: 528 LNRLPVKESAITSDKYRAIGLGTSGYHQYLASNKIKWESEEHIKEVDSLFEDIAYEAIKA 587 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+GAY+ F+GS W G + + G +E W++L++ + G Sbjct: 588 SMELAKEKGAYAEFEGSEWQSGKY-FERRGYNSE-------------RWNKLREDIAKYG 633 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RN MA+APT + +NI + IDP ++ +++ G FT + +L + W Sbjct: 634 IRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEEK-KGSFTPKTA---PDLNNENFW- 688 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A I+ W I++ + RQK IDQ+QS NLY+ Sbjct: 689 --------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNLYI 722 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 E K + +Y ++W G+KT YY+R++S Sbjct: 723 TPEVKAKDILNMYTESWRQGIKTIYYVRNKS 753 >gi|227871658|ref|ZP_03990073.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium sinus F0268] gi|227842500|gb|EEJ52715.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium sinus F0268] Length = 839 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 289/920 (31%), Positives = 454/920 (49%), Gaps = 141/920 (15%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNKS 89 +IKR + KI RA+ KAF+ S I V Q+ + L + L + ++ Sbjct: 7 IIKRGLLEEDYQGEKIERAMEKAFL-------SEGISVEQEKLHFLLGKVEESLAEKHR- 58 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKLK 146 V +E+IQ+ VE +LM +G +K+ R Y+LYRE+R+ +R + K D I L+ Sbjct: 59 ---VSVEEIQNAVEEALMHNGDYKVARAYILYREKRTLLRHLRQRIKEEIGDNEIDDVLR 115 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 D ++ RL G Q++S ++ L L+ + E Sbjct: 116 RCQKD--FPDYDLARLSAKYLSLSKGEQELSKRLAL----------LTRAAAELT----- 158 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 ++EP + ++ R +E+ KK +++ + + Y + E+G+ Sbjct: 159 ---TQEEPGWERIAGRLRSYHFHKEL-----KKAEESRN--LHSFYDK-LVYLTEQGLYG 207 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325 + E ++ LA + R+ F Y GL +L RY + + + E PQ ++ ++ Sbjct: 208 AYILEHYSKEEVEELAKFIDQSRNDLFGYSGLDLLLSRYLIRDHQHVVLESPQEMYLGIS 267 Query: 326 MGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 M LA+KE E + V EFY+++S +TPT N+ + QLSSCF+ TVPD L GI+ Sbjct: 268 MHLAMKEKENRLQYVKEFYDMMSLHQVTMATPTQSNARKPYHQLSSCFIDTVPDSLDGIY 327 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ + A ++KY GG+G + VR G I G G S GVI +++V NDTAVAV+Q G R Sbjct: 328 QSISKFADVSKYGGGMGMYFGKVRSRGGKIRGFEGASGGVIRWIRVVNDTAVAVDQLGMR 387 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502 +GAV YL+ WH D+ EFL L+ N GDDR + HD+ A PDLF K+V + N W L Sbjct: 388 QGAVAVYLDAWHKDLPEFLQLKTNNGDDRMKAHDVFPAVCYPDLFWKKVKEDLNQEWYLM 447 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKMLTMLFET 556 P ++ L D YG+E+E YE+ R ++ +++ + L R +L ET Sbjct: 448 DPHDIFLVKGYCLEDFYGEEWETRYEDCVRDN-----RISKRVYVLKDLVRLILKSAVET 502 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------- 597 G P+ ++D N +P +H G+++ SNLCTEI N E Sbjct: 503 GTPFAFYRDTVNRMNPNKHKGIIYCSNLCTEIAQNMKEAEICERKVVTKDGDEVIVSTVK 562 Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNL S+ L NQ + +++ T+ VR LDNVID+N + + +A+ +N + Sbjct: 563 PGDFVVCNLASLCLGNIPVENQPELERITKTV---VRALDNVIDLNFYPVAEAEITNKRY 619 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 RAIGLG+ G+ L HI + S E ++ D+ E I++ AI AS ELA+ERGAYS+F G Sbjct: 620 RAIGLGVSGYHHMLAKHHIAWESQEHLDFVDKVFENINYAAIKASSELAKERGAYSAFAG 679 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTATI 772 S W+ G E R P W+ LK+ V G+RN+ +A APT++ Sbjct: 680 SEWESG---------------EYFSRRNYNSPRWESLKQEVHE-GIRNAWILATAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + G S +DP ++N F + E K G+I Sbjct: 724 SILIGTSAGLDP----------------IMNRFFLEEKK-----------------GAI- 749 Query: 833 NIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 + R+ +L + +A ++D W + +A RQ+ IDQAQS N ++ +E +L Sbjct: 750 -LPRVAPELSMDTYWYYKSAHQMDQTWSVRAAGLRQRHIDQAQSFNFWITNEYKMSELLN 808 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS++ Sbjct: 809 LYTLAWECGVKTIYYVRSKA 828 >gi|303237765|ref|ZP_07324324.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella disiens FB035-09AN] gi|302482051|gb|EFL45087.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella disiens FB035-09AN] Length = 839 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 284/919 (30%), Positives = 453/919 (49%), Gaps = 131/919 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G S+ KI AI K+F++V G R I + + + +L+H+ Sbjct: 1 MKIKKRDGSEESYTQQKIISAITKSFISVNSLGHQRDI------EQMALEIEAFVLEHDD 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD VE +LM G + + Y+L+R +R++ R K + Sbjct: 55 KR---DVESIQDIVEKTLMSHGFYDEAKSYILFRWQRNEQR----------------KYI 95 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVS----SKIVLSETYKNMYDGL-SESDLETAL 202 + I NS +EE +G+ QD S +LS+ + + L S+++ AL Sbjct: 96 KNIAFNIGDNS------IEEVLNGIRQDFRGAEYSVTLLSDKFVSFSKPLMSQTEKLAAL 149 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ L E P + ++ R L +L + + K + + +++ L + Sbjct: 150 IKAAVELTTAECPQWEMISGRLLSFQLNKSIEALERKLNINSFYDKIKYL--------TD 201 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 EG+ + + ++ ++V ++ ER+ F Y GL +L RY + +G +E Q Sbjct: 202 EGLYGQYILDNYTKEEIVEAEKLMRPERNHLFNYSGLDLLAKRYLIRGYDGRIVENVQEM 261 Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 +M +A+ LA+ E V+ Y+LLS +TPTL N+ + QLSSCF+ TVPD Sbjct: 262 YMGIALHLAMPEKSDRLLWVKKIYDLLSQLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 321 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+ Sbjct: 322 LIGIYRSIDNFAQVSKFGGGMGMYFGKVRATGGSIRGFKGAAGGVIRWMKLVNDTAVAVD 381 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--A 497 Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K ++ Sbjct: 382 QLGMRQGAVAVYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEESLEQ 441 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF PDE+ L D YG+E+E Y+ D + R IS L R +L Sbjct: 442 NWYLFCPDEIKRVKGYALEDFYGEEWE---RRYKECIDDARLSR-RIISIKDLVRLILRS 497 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594 ETG P+ +D N +P H G+++ SNLCTEI N + Sbjct: 498 AVETGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAEIKEVSQVVTTENGDTVVV 557 Query: 595 -----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 + VCNL S++L D + + T VR LDNVID+N + + AK + Sbjct: 558 TTVKPGDFVVCNLASLSLGRLPLE---DKAAMCEKVATVVRALDNVIDLNFYPVPFAKIT 614 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 NH +R+IGLG+ G+ AL + I + S + +E D+ E I++ AISAS E+A+E+GAY Sbjct: 615 NHNYRSIGLGVSGYHHALAIRGIKWESDKHLEFMDKVFETINYAAISASTEIAKEKGAYK 674 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 F+GS W G + E R+ + + W +L++ + GMRN+ +A+APT Sbjct: 675 YFEGSDWQTGKY--------FEKRNYITSD------WQQLRETIGKQGMRNAYLLAVAPT 720 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 ++ + + G + +DP Q +++ V L SD Y Sbjct: 721 SSTSILAGTTAGLDPIMQRFFLEEKKGAMLPRVAPAL---------------SDKTYW-- 763 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 ++ A+ I+ W + ++ RQ+ IDQAQS+NLY+ +E + +++ + Sbjct: 764 --------------VYKDAYHINQQWSVRASGVRQRHIDQAQSMNLYITNEYTMRQVLNL 809 Query: 889 YRQAWLMGLKTTYYLRSRS 907 Y AW G+KT YY+RS+S Sbjct: 810 YILAWKSGVKTIYYVRSKS 828 >gi|89097913|ref|ZP_01170800.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. NRRL B-14911] gi|89087415|gb|EAR66529.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. NRRL B-14911] Length = 769 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 261/756 (34%), Positives = 379/756 (50%), Gaps = 103/756 (13%) Query: 194 SESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 S +L LI S ++I E EP++ V AR L L +KA H Sbjct: 66 SNDELLNQLILDSLSMISEAEPDWTYVAARLYLSSLY-----------EKAAEHRRSTAG 114 Query: 253 PEYFCRY------IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 Y Y + GV + +L ES ++ + + E+D F Y+ +++L DRY Sbjct: 115 ESYGPLYGLITDLTDAGVYSPVLLESYTKEEIDIIGTYIDPEKDRLFTYIAVKMLADRYL 174 Query: 307 LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT 363 R+ E+PQ FM ++M L E ++ + ++ E Y LS+ + +TPTL N+G Sbjct: 175 SRDKKKRLFELPQERFMIISMTLNRSEPKERRLSLIKESYWALSNLYMTAATPTLSNAGK 234 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLSSCF+ TV D L GI+ + + A L+K GG+G +R G+ I G G S G Sbjct: 235 NWGQLSSCFIDTVDDSLQGIYDSNTDIANLSKNGGGIGVYLGKIRSRGSDIKGFKGASSG 294 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+P++K N+TAV+V+Q G+RKGAV YL+ WH D+ FLD + N GD+R RTHD+ T Sbjct: 295 VLPWMKQLNNTAVSVDQLGQRKGAVSVYLDIWHKDIFSFLDSKLNNGDERYRTHDLFTGV 354 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FEIAYENYERQADRGE 533 +PDLFM+ V W LF P EV L D Y ++ F + YE E A+ Sbjct: 355 CLPDLFMETVEARGDWHLFDPHEVRSVMGFSLEDFYDEKPGAGSFRVKYE--ECVANPRL 412 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 K +K+ A+ + ++++ ETG P++ ++D N ++P +H+G+++ +NLCTEI N S Sbjct: 413 SK--QKVPAIDIMKRIMISQLETGTPFMFYRDEVNRKNPNRHLGMIYCTNLCTEIVQNQS 470 Query: 594 SEET-------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + T VCNL SINL A++ L I VR+LDN Sbjct: 471 ATITKDQREEDGRIIIEKIPGDFVVCNLSSINLARAAADHV-----LERLIPIQVRMLDN 525 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID+N + + +N +RAIGLG G+ L L + + + EAV +ADE E I+F Sbjct: 526 VIDLNTIPVLQGVATNRKYRAIGLGTFGWHHLLALKKLRWENEEAVRLADELYEKIAFLT 585 Query: 695 ISASVELAQERGAYSSFKGSLWDQG-VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 I AS+ LA E+G+Y FKGS W G F L V D WD L + V Sbjct: 586 IKASMNLAMEKGSYPGFKGSDWHSGEYFTSRGYSSLDSVHD-----------WDSLMQAV 634 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 + G+RN MA+AP A+ + I G S SIDP ++ Y S D+ + +L + Sbjct: 635 RKNGIRNGYLMAVAPNASTSIIAGSSPSIDPIFRKFY--SEEKKDYKI--PVTAPDLNEH 690 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 W + +A+ ID W I S+RQK IDQA S Sbjct: 691 TTW---------------------------YYKSAYVIDQHWSILQNSKRQKHIDQAISF 723 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 NLY+ + K+L ++ AW GLKTTYY+RS S+ Sbjct: 724 NLYVQNNIKAKELLDLHLSAWKNGLKTTYYVRSTSS 759 >gi|317130867|ref|YP_004097149.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315475815|gb|ADU32418.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 726 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 251/749 (33%), Positives = 372/749 (49%), Gaps = 97/749 (12%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 SE DL L+ + + EP++ V A L++L ++V +P+ E+ + Sbjct: 31 SEKDL---LLAALDRISSDEPDWTYVAATIRLQQLYKQVAEKRQMRPE-----EVYTGFA 82 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GS 312 +E G + L + DL L L D F YLGL L DRY + G Sbjct: 83 HNVTYLVEAGFYDQDLAGAYQKDDLERLEAALNKSNDSKFTYLGLHTLIDRYLTRDHEGH 142 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 +E+PQ FM +AM L +KE ++ KR +E Y LS+ + +TPTL N+G H QLS Sbjct: 143 ILELPQERFMIIAMTL-MKEEKQSKRLDYVLEAYWALSNLYMTVATPTLSNAGKTHGQLS 201 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF+ T+ D L GIF + + A L+K GG+G +R G+ I G G S GV+P++K Sbjct: 202 SCFIDTMDDSLRGIFDSTTDAATLSKNGGGIGIYLGKIRAKGSSIKGFKGTSSGVLPWMK 261 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 N+TAV+V+Q G+R+GA+ YL+ WH D+ FLD + N GD+R+RTHD+ T +PDLF Sbjct: 262 QLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFSFLDAKLNNGDERKRTHDLFTGVCLPDLF 321 Query: 490 MKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRK 539 M++V W LF P EV L D Y +E F YE R + Sbjct: 322 MEKVEAREAWFLFDPHEVRQTMGFSLEDFYDEERGAGSFREKYEQCVRDPRLSK----ES 377 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----E 595 + A+ + ++++ ETG P++ ++D N ++P H G+++ SNLCTEI N S+ E Sbjct: 378 VPAIEIMKRVMISQLETGTPYMFYRDEANRQNPNAHCGMMYGSNLCTEIMQNMSATTIKE 437 Query: 596 ET---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 ET VCNL SINL + L+ I VR+LDNVIDIN Sbjct: 438 ETTEDGKILITKEAGDYVVCNLSSINLATAVTDGV-----LSRLIPIQVRMLDNVIDINN 492 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + +A+ +N +RAIGLG G+ L + + + S EA+ AD+ E I++ I AS+E Sbjct: 493 IEVPQARLTNEKYRAIGLGTFGWHHLLAITGLRWESEEAINFADKLYEKIAYLTIEASME 552 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+E+GAY F+ S W G + + + W L + V G+RN Sbjct: 553 LAKEKGAYEKFENSAWHTGKY--------------FSQRNYTDEKWIALAEMVNRSGLRN 598 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 MA+AP ++ A I G + SIDP Y+ Y + + V ++ W Sbjct: 599 GYLMAVAPNSSTAIIAGTTASIDPIYRKEYAEEKKNFRIPVT----APDISPATTW---- 650 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879 + +A +ID +W ++ RQK IDQ S N+Y+ + Sbjct: 651 -----------------------YYKSAHDIDQIWSVKQNGARQKHIDQGVSFNIYVKNT 687 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 K+L I+ AW GLK+TYY+RS S+ Sbjct: 688 VKAKELLDIHLSAWKHGLKSTYYVRSTSS 716 >gi|294794441|ref|ZP_06759577.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 3_1_44] gi|294454771|gb|EFG23144.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 3_1_44] Length = 767 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 258/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 8 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 67 Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245 + +T IEK ++ V AR L L +E +T YK Sbjct: 68 V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 123 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 +P ++E A +L L + +K +RD+ F Y GL++L DRY Sbjct: 124 ------FPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 177 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 + N E+PQ FM +AM LAL E E K + A +FY+L+S +TPTL N+GT Sbjct: 178 LVKGFNKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 237 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S G Sbjct: 238 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 297 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A Sbjct: 298 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 357 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEI 534 +P++FM+R+ +TLF P E+ L D Y KEF Y E+ + I Sbjct: 358 SVPNIFMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI 417 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 +V A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 418 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 473 Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++ + CNL SI+L + ++L I +R+LDN Sbjct: 474 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 527 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+A Sbjct: 528 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 587 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS+ELA+E+GAY +FKGS W+ G + R +R W +L V Sbjct: 588 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 633 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN MA+APT + +NI + IDP ++ +++ G FT + +L + Sbjct: 634 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 689 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W ++ A ID W I++ RQ+ IDQAQS N Sbjct: 690 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 722 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ + K++ +Y +A+ G+KT YY+R++S Sbjct: 723 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 756 >gi|282849774|ref|ZP_06259158.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella parvula ATCC 17745] gi|282580711|gb|EFB86110.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella parvula ATCC 17745] Length = 760 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 258/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 1 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60 Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245 + +T IEK ++ V AR L L +E +T YK Sbjct: 61 V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 116 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 +P ++E A +L L + +K +RD+ F Y GL++L DRY Sbjct: 117 ------FPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 170 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 + N E+PQ FM +AM LAL E E K + A +FY+L+S +TPTL N+GT Sbjct: 171 LVKGFNKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 230 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S G Sbjct: 231 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 290 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A Sbjct: 291 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 350 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEI 534 +P++FM+R+ +TLF P E+ L D Y KEF Y E+ + I Sbjct: 351 SVPNIFMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI 410 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 +V A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 411 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 466 Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++ + CNL SI+L + ++L I +R+LDN Sbjct: 467 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 520 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+A Sbjct: 521 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 580 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS+ELA+E+GAY +FKGS W+ G + R +R W +L V Sbjct: 581 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 626 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN MA+APT + +NI + IDP ++ +++ G FT + +L + Sbjct: 627 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 682 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W ++ A ID W I++ RQ+ IDQAQS N Sbjct: 683 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 715 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ + K++ +Y +A+ G+KT YY+R++S Sbjct: 716 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749 >gi|238018469|ref|ZP_04598895.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748] gi|237864940|gb|EEP66230.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748] Length = 776 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 258/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 17 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 76 Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245 + +T IEK ++ V AR L L +E +T YK Sbjct: 77 V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 132 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 +P +EE A +L L + +K +RD+ F Y GL++L DRY Sbjct: 133 ------FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 186 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 + N E+PQ FM +AM LAL E E K + A +FY+L+S +TPTL N+GT Sbjct: 187 LVKGFNKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 246 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S G Sbjct: 247 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 306 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A Sbjct: 307 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 366 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEI 534 +P++FM+R+ +TLF P E+ L D Y KEF Y E+ + I Sbjct: 367 SVPNIFMERMIARENFTLFDPHEILAVKGYALEDYYDTDDNKEFTKRYLECEQDPNLHGI 426 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 +V A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 427 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 482 Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++ + CNL SI+L + ++L I +R+LDN Sbjct: 483 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 536 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+++A Sbjct: 537 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYA 596 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS+ELA+E+GAY +FKGS W+ G + R +R W +L V Sbjct: 597 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 642 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN MA+APT + +NI + IDP ++ +++ G FT + +L + Sbjct: 643 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNNKT 698 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W ++ A ID W I++ RQ+ IDQAQS N Sbjct: 699 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 731 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ + K++ +Y +A+ G+KT YY+R++S Sbjct: 732 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 765 >gi|303230488|ref|ZP_07317247.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514854|gb|EFL56837.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-049-V-Sch6] Length = 760 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 254/811 (31%), Positives = 405/811 (49%), Gaps = 110/811 (13%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 1 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60 Query: 203 IFSS--RTLIEKEPNYAK-----------VTARFLLEKLRREV-LTTVYKKPQKATHHEM 248 + ++ + + +K+ + V AR L L +E +T YK Sbjct: 61 VQTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN---- 116 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 117 ---FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVK 173 Query: 309 -INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 N E+PQ FM +AM LAL E E K + A +FY+L+S +TPTL N+GT Sbjct: 174 GFNKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFH 233 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP Sbjct: 234 QLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIP 293 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P Sbjct: 294 WIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVP 353 Query: 487 DLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEIKVF 537 ++FM+R+ +TLF P E+ L D Y KEF Y E+ + I+V Sbjct: 354 NIFMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDPNLHGIEV- 412 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------ 591 A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 413 ---PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNL 469 Query: 592 --------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +++ + CNL SI+L + ++L I +R+LDNVI Sbjct: 470 AEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDNVIS 523 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I++++I A Sbjct: 524 INQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKA 583 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+GAY +FKGS W+ G + R +R W +L V G Sbjct: 584 SMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLASDVAKYG 629 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RN MA+APT + +NI + IDP ++ +++ G FT + +L + W Sbjct: 630 IRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKTFW- 684 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 685 --------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYI 718 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + K++ +Y +A+ G+KT YY+R++S Sbjct: 719 TPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749 >gi|327312836|ref|YP_004328273.1| ribonucleoside-diphosphate reductase subunit alpha [Prevotella denticola F0289] gi|326945781|gb|AEA21666.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella denticola F0289] Length = 840 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 285/921 (30%), Positives = 461/921 (50%), Gaps = 134/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG ++D +KIS AI K+F++ GK + + ++ + EQ +T Sbjct: 1 MEITKRNGEKEAYDNNKISTAIKKSFIST-GKNVPDN-EIAGMVSKV-EQFIT------D 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + + +EDIQ++VE LM+ GH++ + Y+L+R +R++ R A ++ + Sbjct: 52 NPELRTVEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINY----------IAWA 101 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207 +DD L + E A S + L E + + G+S D ALI ++ Sbjct: 102 VDDRQLADVLHRVAHEYRERA-------YSMVTLQEKFASFSKPGMSHRDAIDALIKAAV 154 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EEG 263 L E P + ++AR L Y+ QK + E + ++ +Y+ EEG Sbjct: 155 ELTTPEAPAWEMISARIL-----------SYRSEQKISRLEDELGLKTFYRKVKYMTEEG 203 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322 + + ++ + ++ A+ ++ ER+ Y GL +L RY + + +G IE Q F+ Sbjct: 204 LYGDYILQNYSEEEINEAASFIRPERNELLNYSGLDLLLKRYVIKNYSGKVIERVQEMFL 263 Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 +A+ LA+ E +KE R + Y+LLS +TPTL N+ + QLSSCF+ TVPD Sbjct: 264 GIALHLAMPE-KKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 322 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+ Sbjct: 323 LDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVD 382 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497 Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N Sbjct: 383 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQ 442 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKML 550 WTLF P+E+ L D YG+E+E Y + +++ R R IS + +L Sbjct: 443 NWTLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR------RVISIKDIVHLVL 496 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N + ET Sbjct: 497 RSAVETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTV 556 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++L D +++ + T VR LDNVI +N + + A+ Sbjct: 557 VVTKTRPGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVPYAR 613 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL HI + S E ++ D+ E I+ AI AS +LA+E+G+ Sbjct: 614 ITNQRYRSIGLGVSGYHHALAKRHIKWESEEHLQFMDKVFETINRAAILASSDLAKEKGS 673 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G + D G W ++++ V GMRN+ +A+A Sbjct: 674 YQFFEGSDWQTGAY-FDKRGY-------------DNAEWKDVRRTVARQGMRNAYLLAVA 719 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + +DP + +++ V EL W Sbjct: 720 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 764 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ Sbjct: 765 ----------------MYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVL 808 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 DLYLLAWKNGVKTLYYVRSKS 829 >gi|331086749|ref|ZP_08335826.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409915|gb|EGG89350.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 9_1_43BFAA] Length = 750 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 259/783 (33%), Positives = 379/783 (48%), Gaps = 107/783 (13%) Query: 172 GLQDVSSKIV------------LSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYA 217 GLQ+V S I L E Y Y G S + L+ ++ L +E P + Sbjct: 17 GLQEVFSDISREFLDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWE 76 Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277 + AR L R E+ ++ + Y E C +E + + E+ + + Sbjct: 77 MIAARIRLVTFRNEL-------KEQMKQRNVNSFY-EKICYLTKENLYGAYILENYTEEE 128 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKE 336 + ++ ERD F Y GL++L +RY + G +E PQ F+ +AM LA+KE Sbjct: 129 ITAFEKLMREERDHLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDR 188 Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 VE FYN+LS +TPTL N+ H QLSSCF+ TVPD L GI+ ++ A ++K Sbjct: 189 SVWVEKFYNMLSKLQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSK 248 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + VR G+ I G G + GVI ++++ NDTAVAV+Q G R+GA YL+ W Sbjct: 249 LGGGMGMYFGKVRASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVW 308 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD---- 509 H D+ EFL+LR N GDDR + HD+ PD F ++ N W L P E+ Sbjct: 309 HRDLPEFLNLRTNNGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGY 368 Query: 510 -LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L D +G+E++ Y + AD EI+ R I + R ++ + ETG P+ +D N Sbjct: 369 ALEDSFGEEWKKKY--LDCVAD-PEIQK-RVIPIKDVIRMIIKSVVETGTPFAFNRDHVN 424 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEET-----------------------AVCNLGSI 605 +P H G+++ SNLCTEI N S E VCNL S+ Sbjct: 425 RANPNSHKGIIYCSNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASL 484 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 +L NN+ ++L+ +TAVR LDNVID+N + AK +N +R IGLG+ G+ Sbjct: 485 SLGRIDVNNR---EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHH 541 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L IP+ S E + A+ I + A+ AS ELA+E+G Y+ F+GS W G + Sbjct: 542 MLAKNEIPWESEEHLAFAERVFAEIHYAAVEASAELAREKGCYTYFEGSKWQTGEY---- 597 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 A + W +L K+V+ GMRN MAIAPT + + I G + IDP Sbjct: 598 ----------FAERHLTEDRWKKLAKKVRENGMRNGYLMAIAPTGSTSMIAGTTAGIDPV 647 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 +++ SG V EL W + Sbjct: 648 MSRYFLEEKKSGILPRV----APELTMDTFW---------------------------YY 676 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A ID W + + RQ++IDQAQS+NLY+ +E + +K+ +Y AW G+KT YY+R Sbjct: 677 KNAHHIDQTWSVRACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIR 736 Query: 905 SRS 907 S+S Sbjct: 737 SKS 739 >gi|302344782|ref|YP_003813135.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica ATCC 25845] gi|302149042|gb|ADK95304.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica ATCC 25845] Length = 839 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 284/921 (30%), Positives = 453/921 (49%), Gaps = 135/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG V ++ KIS AI K+F++ + I +I ++E V + ++ N Sbjct: 1 MNITKRNGEVEVYNNEKISIAIKKSFIS-----TGKDISDNEIAGMVSE--VEQFIKENP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +EDIQ++VE LM GH+ + Y+L+R +R++ R A ++ Sbjct: 54 E--LRTVEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINY-------------- 97 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYD-GLSESDLETALIFSS 206 + + + + L ++ ++ S S + L E + + G+S+ D ALI ++ Sbjct: 98 ----IVWTADDRELADVLHSVAREYRERSYSMVTLQEKFSSFTKPGMSQKDSIDALIKAA 153 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EE 262 L E P + ++AR L Y+ +K T E + ++ +Y+ EE Sbjct: 154 VELTTPEAPAWEMISARIL-----------SYRSEKKITRLEEELGLKTFYRKVKYMTEE 202 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFF 321 G+ + ++ + ++ A + ER+ Y GL +L RY + + +G IE Q F Sbjct: 203 GLYGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMF 262 Query: 322 MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 + +A+ LA+ E E V Y+LLS +TPTL NS QLSSCF+ TVPD L Sbjct: 263 LGIALHLAMPEKEDRLMWVRRIYDLLSKLEVTMATPTLSNSRKPSHQLSSCFIDTVPDSL 322 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++++ NDTAVAV+Q Sbjct: 323 DGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQ 382 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498 G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N Sbjct: 383 LGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDMNQN 442 Query: 499 WTLFSPDEVSD-----LHDLYGKEFEIAY---ENYERQADRGEIKVFRKISAVALWRKML 550 W+LF P+E+ L D YG+E+E Y N +R + R IS + R +L Sbjct: 443 WSLFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR-------RVISIKDIVRLVL 495 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N + ET Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTV 555 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++L D +K+ + T VR LDNVI++N + + A+ Sbjct: 556 VVTTTRPGEFVVCNLASLSLGRLPLE---DEEKMKEKVATVVRALDNVINLNFYPVPYAQ 612 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL I + S E +E D+ E I+ AI AS LA+E+G+ Sbjct: 613 LTNQRYRSIGLGISGYHHALAKRRIKWESEEHLEFMDKVFETINRAAILASSNLAKEKGS 672 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G + D G W +++K V GMRN+ +A+A Sbjct: 673 YQFFEGSDWQTGTY-FDKRGY-------------DSAEWQDVRKTVALQGMRNAYLLAVA 718 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + +DP + +++ V EL W Sbjct: 719 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 763 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ Sbjct: 764 ----------------MYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQIL 807 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 808 DLYLLAWKEGVKTIYYVRSKS 828 >gi|288801823|ref|ZP_06407265.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica D18] gi|288335865|gb|EFC74298.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica D18] Length = 839 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 285/920 (30%), Positives = 455/920 (49%), Gaps = 133/920 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG V ++ KIS AI K+F++ GK S S +I ++E V + ++ N Sbjct: 1 MNITKRNGEVEVYNNEKISIAIKKSFIST-GKDISDS----EIAGMVSE--VEQFIKENP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +EDIQ++VE LM GH+ + Y+L+R +R++ R A ++ Sbjct: 54 E--LRTVEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINY-------------- 97 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYD-GLSESDLETALIFSS 206 + + + + L ++ ++ S S + L E + + G+S+ D ALI ++ Sbjct: 98 ----IVWTADDRELADVLHSVAREYRERSYSMVTLQEKFSSFTKPGMSQKDSIDALIKAA 153 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EE 262 L E P + ++AR L Y+ +K T E + ++ +Y+ EE Sbjct: 154 VELTTPEAPAWEMISARIL-----------SYRSEKKITRLEEELGLKTFYRKVKYMTEE 202 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFF 321 G+ + ++ + ++ A + ER+ Y GL +L RY + + G IE Q F Sbjct: 203 GLYGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYTGKVIERVQEMF 262 Query: 322 MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 + +A+ LA+ E E V Y+LLS +TPTL NS QLSSCF+ TVPD L Sbjct: 263 LGIALHLAMPEKEDRLTWVRRIYDLLSKLEVTMATPTLSNSRKSSHQLSSCFIDTVPDSL 322 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++++ NDTAVAV+Q Sbjct: 323 DGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQ 382 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498 G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N Sbjct: 383 LGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQN 442 Query: 499 WTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKMLT 551 W+LF P+E+ L D YG+E+E Y + +++ R R IS + R +L Sbjct: 443 WSLFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR------RVISIKDIVRLVLR 496 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N + ET Sbjct: 497 SAVETGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVV 556 Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S++L D +K+ + T VR LDNVI++N + + A+ Sbjct: 557 VTTTRPGEFVVCNLASLSLGRLPLE---DEEKMKEKVATVVRALDNVINLNFYPVPYAQL 613 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS LA+E+G+Y Sbjct: 614 TNQRYRSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSNLAKEKGSY 673 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G + D G W +++K V GMRN+ +A+AP Sbjct: 674 QFFEGSDWQTGAY-FDKRGY-------------DSAEWQDVRKTVALQGMRNAYLLAVAP 719 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + +DP + +++ V EL W Sbjct: 720 TSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW------------ 763 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ Sbjct: 764 ---------------MYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILD 808 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 LYLLAWKEGVKTIYYVRSKS 828 >gi|333030472|ref|ZP_08458533.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides coprosuis DSM 18011] gi|332741069|gb|EGJ71551.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides coprosuis DSM 18011] Length = 835 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 291/927 (31%), Positives = 449/927 (48%), Gaps = 151/927 (16%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN- 87 +++IKRN V F KI RAI+ AF +++ RS+ ++ + + L+ N Sbjct: 1 MKIIKRNRQVEDFTYDKIKRAIVAAFHSLQ-----RSVSEHEL------EIICDLISVNL 49 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 + + V +E +QD VE LM+ GH+K + Y+LYR+ R+ R + + + Sbjct: 50 EDSDYVDVETVQDLVETVLMKRGHYKEAKAYILYRDRRTACREMINQFR---------QT 100 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFS 205 + DD T+ + L+ I E D+ L Y++ Y DG + L+ + + Sbjct: 101 ITDDDTI-----ELLQDIQNEFGQKQYDLQ---FLYSKYRSFYKADG---NPLKILMKAA 149 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEYFC 257 + PN+ + +R L +L +E+ LT++YKK T Q LY Y Sbjct: 150 VELITPDAPNWEFIASRLLAVELEKEIQQAERELGLTSLYKKMNYLTQ---QNLYGSYML 206 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEM 316 + + ++ L+ +K R+ Y L +L RY + + + +E Sbjct: 207 KNYSQA-------------EVEELSKYMKTSRNQLLTYSSLHLLSKRYLIQNYSHHLLER 253 Query: 317 PQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 PQ FM +AM LA+ E EK+ A Y++LS+ +TPT+ N+ QLSSCF Sbjct: 254 PQEMFMGIAMHLAIPEGEKKVCWAKRIYDVLSTLKVTMATPTMSNARKPLSQLSSCFEDV 313 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 +PD L GI+ L A ++K+ GG+G VR +G+ I G G + G++ ++K+ NDTA Sbjct: 314 MPDSLVGIYRTLTNFAQVSKFGGGMGIYIGKVRAVGSDIRGFKGVAGGILKWVKLCNDTA 373 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +AV+Q G R+G+V YL+ WH D+ EFL +R N GDDR + HD+ IPD F ++V Sbjct: 374 IAVDQLGVRQGSVAIYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGICIPDYFWEQVKT 433 Query: 496 N--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 N W L P E+ +L D YG E++ Y E D K R I + R Sbjct: 434 NMEGDWYLMCPHEIMTMKGYNLEDTYGDEWKQKY--LECVNDHRIPK--RIIPIKEMVRL 489 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------------- 594 ++ ETG P+I +D N +P +H GV++ SNLCTEI N S+ Sbjct: 490 IIKSAVETGTPFIFNRDLVNNLNPNKHQGVIYCSNLCTEIAQNQSAIQDVRRTVRLENGD 549 Query: 595 ----EET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 EET VCNL S+ +L + + D ++L I T VR LDNVID+N + I Sbjct: 550 EIIVEETKAGDFVVCNLASL-VLGNI--DVEDSEELQGIIHTIVRALDNVIDLNFYPIPY 606 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+ +N R IGLG G+ L + + S E + D+ E I+++ I AS +LA+E+ Sbjct: 607 AQITNQKMRPIGLGTSGYHHLLAQKGLRWESDEHLAYMDKVYEKINYYTIEASNQLAKEK 666 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G YS F S W G D + + W L V GMRN +A Sbjct: 667 GVYSFFDKSDWQTG--------------DYFKLRGYASEEWKHLATNVAKNGMRNGYLLA 712 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPT++ + I G + DP V+N + + E K Sbjct: 713 IAPTSSTSIIAGTTAGTDP----------------VMNRYFLEEKK-------------- 742 Query: 826 YHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 GSI + R+ +L ++ TA +ID W+I++A RQ+ +DQ+QS+NLY+ E Sbjct: 743 ---GSI--VPRVAPELSDSTFWLYKTAHQIDQSWVIDAAGVRQRHLDQSQSVNLYITQEF 797 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + +KL +Y +AW G+KT YY+RS+S Sbjct: 798 TFRKLLNLYLRAWEKGVKTLYYVRSQS 824 >gi|269798662|ref|YP_003312562.1| ribonucleoside-diphosphate reductase, subunit alpha [Veillonella parvula DSM 2008] gi|269095291|gb|ACZ25282.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella parvula DSM 2008] Length = 760 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 257/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 1 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60 Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245 + +T IEK ++ V AR L L +E +T YK Sbjct: 61 V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 116 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 +P +EE A +L L + +K +RD+ F Y GL++L DRY Sbjct: 117 ------FPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 170 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 + N E+PQ FM +AM LAL E + K K A +FY+L+S +TPTL N+GT Sbjct: 171 LVKGFNKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGT 230 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S G Sbjct: 231 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 290 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A Sbjct: 291 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 350 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEI 534 +P++FM+R+ +TLF P E+ L + + KEF Y E+ + I Sbjct: 351 SVPNIFMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI 410 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 +V A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 411 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 466 Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++ + CNL SI+L + ++L I +R+LDN Sbjct: 467 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 520 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+A Sbjct: 521 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 580 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS+ELA+E+GAY +FKGS W+ G + R +R W +L V Sbjct: 581 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 626 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN MA+APT + +NI + IDP ++ +++ G FT + +L + Sbjct: 627 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 682 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W ++ A ID W I++ RQ+ IDQAQS N Sbjct: 683 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 715 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ + K++ +Y +A+ G+KT YY+R++S Sbjct: 716 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749 >gi|294792662|ref|ZP_06757809.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 6_1_27] gi|294456561|gb|EFG24924.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 6_1_27] Length = 767 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 257/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 8 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 67 Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245 + +T IEK ++ V AR L L +E +T YK Sbjct: 68 V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 123 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 +P +EE A +L L + +K +RD+ F Y GL++L DRY Sbjct: 124 ------FPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 177 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 + N E+PQ FM +AM LAL E + K K A +FY+L+S +TPTL N+GT Sbjct: 178 LVKGFNKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGT 237 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S G Sbjct: 238 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 297 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A Sbjct: 298 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 357 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEI 534 +P++FM+R+ +TLF P E+ L + + KEF Y E+ + I Sbjct: 358 SVPNIFMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI 417 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 +V A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 418 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 473 Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++ + CNL SI+L + ++L I +R+LDN Sbjct: 474 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 527 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+A Sbjct: 528 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 587 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS+ELA+E+GAY +FKGS W+ G + R +R W +L V Sbjct: 588 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 633 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN MA+APT + +NI + IDP ++ +++ G FT + +L + Sbjct: 634 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 689 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W ++ A ID W I++ RQ+ IDQAQS N Sbjct: 690 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 722 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ + K++ +Y +A+ G+KT YY+R++S Sbjct: 723 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 756 >gi|325859752|ref|ZP_08172882.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella denticola CRIS 18C-A] gi|325482678|gb|EGC85681.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella denticola CRIS 18C-A] Length = 840 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 284/921 (30%), Positives = 461/921 (50%), Gaps = 134/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +++ +KIS AI K+F++ GK + + ++ + EQ +T Sbjct: 1 MEITKRNGEKEAYNNNKISTAIKKSFIST-GKNVPDN-EIAGMVSKV-EQFIT------D 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + + +EDIQ++VE LM+ GH++ + Y+L+R +R++ R A ++ + Sbjct: 52 NPELRTVEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINY----------IAWA 101 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207 +DD L + E A S + L E + + G+S D ALI ++ Sbjct: 102 VDDRQLADVLHRVAHEYRERA-------YSMVTLQEKFASFSKPGMSHRDAIDALIKAAV 154 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EEG 263 L E P + ++AR L Y+ QK + E + ++ +Y+ EEG Sbjct: 155 ELTTPEAPAWEMISARIL-----------SYRSEQKISRLEDELGLKTFYRKVKYMTEEG 203 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322 + + ++ + ++ A+ ++ ER+ Y GL +L RY + + +G IE Q F+ Sbjct: 204 LYGDYILQNYSEEEINEAASFIRPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFL 263 Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 +A+ LA+ E +KE R + Y+LLS +TPTL N+ + QLSSCF+ TVPD Sbjct: 264 GIALHLAMPE-KKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 322 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+ Sbjct: 323 LDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVD 382 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497 Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N Sbjct: 383 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQ 442 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKML 550 WTLF P+E+ L D YG+E+E Y + +++ R R IS + R +L Sbjct: 443 NWTLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR------RVISIKDIVRLVL 496 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N + ET Sbjct: 497 RSAVETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTV 556 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++L D +++ + T VR LDNVI +N + + A+ Sbjct: 557 VVTKTRPGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVPYAR 613 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS +LA+E+G+ Sbjct: 614 ITNQRYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFEIINRAAILASSDLAKEKGS 673 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G + D G W ++++ V GMRN+ +A+A Sbjct: 674 YQFFEGSDWQTGAY-FDKRGY-------------DNAEWKDVRRTVARQGMRNAYLLAVA 719 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + +DP + +++ V EL W Sbjct: 720 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 764 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ Sbjct: 765 ----------------MYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVL 808 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 DLYLLAWKNGVKTLYYVRSKS 829 >gi|303228691|ref|ZP_07315516.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516671|gb|EFL58588.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-134-V-Col7a] Length = 760 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 253/811 (31%), Positives = 406/811 (50%), Gaps = 110/811 (13%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 1 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60 Query: 203 IFSS--RTLIEKEPNYAK-----------VTARFLLEKLRREV-LTTVYKKPQKATHHEM 248 + ++ + + +K+ + V AR L L +E +T YK Sbjct: 61 VQTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN---- 116 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 117 ---FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVK 173 Query: 309 -INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 N E+PQ FM +AM LAL E + K + A +FY+L+S +TPTL N+GT Sbjct: 174 GFNKEIYELPQERFMAIAMHLALVEGKNKVEYAKKFYDLMSQLKMTTATPTLANAGTPFH 233 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP Sbjct: 234 QLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIP 293 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P Sbjct: 294 WIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVP 353 Query: 487 DLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEIKVF 537 ++FM+R+ +TLF P E+ L D Y KEF Y E+ ++ I+V Sbjct: 354 NIFMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDSNLHGIEV- 412 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------ 591 A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 413 ---PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNL 469 Query: 592 --------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +++ + CNL SI+L + ++L I +R+LDNVI Sbjct: 470 AEEIINKDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDNVIS 523 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I++++I A Sbjct: 524 INQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKA 583 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+GAY +FKGS W+ G + R +R W +L V G Sbjct: 584 SMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLASDVAKYG 629 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RN MA+APT + +NI + IDP ++ +++ G FT + +L + W Sbjct: 630 IRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKTFW- 684 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 685 --------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYI 718 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + K++ +Y +A+ G+KT YY+R++S Sbjct: 719 TPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749 >gi|167760515|ref|ZP_02432642.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704] gi|167661881|gb|EDS06011.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704] Length = 843 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 282/919 (30%), Positives = 455/919 (49%), Gaps = 127/919 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHN 87 +++ KRNG ++ P KI RA+ AF +V G S D ++KN+ ++ R+ + Sbjct: 1 MRISKRNGTNEAYCPEKIKRAVSLAFQSV---GNLLSDEEADRLLKNVEQKIDDRITEEP 57 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 V +E+IQD VE +LM++ H+K + Y+LYREER+ R ++ P +L + Sbjct: 58 S----VSVEEIQDFVEQALMEANHYKELKSYILYREERARKRKSRKKLADKIPAFDRLAL 113 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ++ D I + E +E + Q L++ + + LI ++ Sbjct: 114 VLAD---IQKEFTQEEYDLEHLYAKFQAFGKP------------ELNDQEKLSMLIKAAV 158 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L +E P + V AR L+ +++ +K + H ++C Y + E+G+ Sbjct: 159 ELTTQEAPQWEMVAARLLMLDFEQKL-----EKNMRRCH--IECFYDK-LAYLTEQGLYG 210 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325 + ++ ++ L ++ +R+ F Y GL++L RY + G +E PQ F+ +A Sbjct: 211 DYILKAYDRDEIERLVLFIEPKRNHLFTYSGLELLLGRYVIRTGKGVPMESPQEMFLGIA 270 Query: 326 MGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 M LA+KE ++E FY++LS +TPTL N+ + QLSSCF+ TVPD L GI+ Sbjct: 271 MHLAMKEKKDRESWVKRFYDMLSQLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIY 330 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R Sbjct: 331 RSIDNFAKVSKFGGGMGMYFGKVRASGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGMR 390 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502 +GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F K N W L Sbjct: 391 QGAVAVYLDVWHRDLPEFLGLRTNNGDDRMKAHDVFPAVCYPDYFWKGARDNIEGDWYLM 450 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKMLTMLFET 556 P E+ L D +G+++E Y++ R + ++ +++ + + R ++ ET Sbjct: 451 CPHEILTVKGYALEDYFGEDWEERYQDCVRDS-----RIQKRVIPIKDIIRLIIKSAVET 505 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------------ 598 G P+ +D N +P H G+++ SNLCTEI N S+ E Sbjct: 506 GTPFTFNRDTVNRANPNSHKGIIYCSNLCTEIAQNMSAIEQVEQKIEEIDGETVVVTVTK 565 Query: 599 -----VCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 VCNL S++L LA D +++A +AVR LDNVID+N + A+ + Sbjct: 566 PGEFVVCNLASLSLGRLELA-------DEEEIAYITESAVRALDNVIDLNFFPVPYARIN 618 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N +R IGLG+ G+ L I + S E +E ++ I + AI AS +A+E+G+Y Sbjct: 619 NRKYRPIGLGVSGYHHMLAKHEIAWESEEHLEFVEKVFADIHYAAIKASSRIAREKGSYE 678 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 F+GS W G + D GL + W+EL+ V G+RN +A+APT Sbjct: 679 YFEGSGWQNGSYFADR-GL-------------TDGRWEELRAEVAEYGLRNGYLLAVAPT 724 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 ++ + I G + +DP +++ +G V EL + W Sbjct: 725 SSTSIIAGTTAGLDPIMSRYFLEEKKNGLMPRV----APELSMDNFW------------- 767 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + A ID W + + RQ+ IDQAQS+NLY+ +E + +K+ + Sbjct: 768 --------------YYKNAHYIDQYWSVRACGVRQRHIDQAQSMNLYITNEYTFRKVLDL 813 Query: 889 YRQAWLMGLKTTYYLRSRS 907 Y AW G+KT YY+RS+S Sbjct: 814 YILAWEEGVKTIYYIRSKS 832 >gi|313894419|ref|ZP_07827984.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441243|gb|EFR59670.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 760 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 256/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%) Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++IM+ DG + ++ + ++ AC GL + + DG++ +++ L Sbjct: 1 MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELELDAKLQFVDGMTTKEIQKTL 60 Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245 + +T IEK ++ V AR L L +E +T YK Sbjct: 61 V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 116 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 +P +EE A +L L + +K +RD+ F Y GL++L DRY Sbjct: 117 ------FPNLVHMLVEEKKYADFFVSEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 170 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 + N E+PQ FM +AM LAL E E K + A +FY+L+S +TPTL N+GT Sbjct: 171 LVKGFNKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 230 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLSSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S G Sbjct: 231 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 290 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP++++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A Sbjct: 291 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 350 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEI 534 +P++FM+R+ +TLF P E+ L D + KEF Y E+ + I Sbjct: 351 SVPNIFMERMLARENFTLFDPHEILAVKGYALEDYFDTEDEKEFTKRYIECEQDPNLHGI 410 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 +V A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 411 QV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 466 Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++ + CNL SI+L + ++L I +R+LDN Sbjct: 467 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 520 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI IN + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I++++ Sbjct: 521 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYS 580 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS+ELA+E+GAY +FKGS W+ G + R +R W +L V Sbjct: 581 IKASMELAKEKGAYPAFKGSEWETGAYF---------TRRGYTSDR-----WKQLAADVA 626 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN MA+APT + +NI + IDP ++ +++ G FT + +L + Sbjct: 627 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNNKT 682 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W ++ A ID W I++ RQ+ IDQAQS N Sbjct: 683 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 715 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ + K++ +Y +A+ G+KT YY+R++S Sbjct: 716 LYITPQMKAKEILDLYVEAYKQGVKTIYYIRNQS 749 >gi|325663146|ref|ZP_08151596.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 4_1_37FAA] gi|325470600|gb|EGC73830.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 4_1_37FAA] Length = 750 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 258/783 (32%), Positives = 378/783 (48%), Gaps = 107/783 (13%) Query: 172 GLQDVSSKIV------------LSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYA 217 GLQ+V S I L E Y Y G S + L+ ++ L +E P + Sbjct: 17 GLQEVFSDISREFLDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWE 76 Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277 + AR L R E+ ++ + Y E C +E + + E+ + + Sbjct: 77 MIAARIRLVTFRNEL-------KEQMKQRNVNSFY-EKICYLTKENLYGAYILENYTEEE 128 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKE 336 + ++ ERD F Y GL++L +RY + G +E PQ F+ +AM LA+KE Sbjct: 129 ITAFEKLMREERDHLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDR 188 Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 VE FYN+LS +TPTL N+ H QLSSCF+ TVPD L GI+ ++ A ++K Sbjct: 189 SGWVEKFYNMLSKLQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSK 248 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + VR G+ I G G + GVI ++++ NDTAVAV+Q G R+GA YL+ W Sbjct: 249 LGGGMGMYFGKVRASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVW 308 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD---- 509 H D+ EFL+LR N GDDR + HD+ PD F ++ N W L P E+ Sbjct: 309 HRDLPEFLNLRTNNGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGY 368 Query: 510 -LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L D +G+E++ Y + AD EI+ R I + R ++ + ETG P+ +D N Sbjct: 369 ALEDSFGEEWKKKY--LDCVAD-PEIQK-RVIPIKDVIRMIIKSVVETGTPFAFNRDHVN 424 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEET-----------------------AVCNLGSI 605 +P H G+++ SNLCTEI N S E VCNL S+ Sbjct: 425 RANPNSHKGIIYCSNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASL 484 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 +L NN+ ++L+ +TAVR LDNVID+N + AK +N +R IGLG+ G+ Sbjct: 485 SLGRIDVNNK---EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHH 541 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L IP+ S E + A+ I + A+ AS ELA+E+G+Y+ F+GS W G + Sbjct: 542 MLAKNEIPWESEEHLAFAERVFAEIHYAAVEASAELAKEKGSYTYFEGSKWQTGEY---- 597 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 A + W L K++ GMRN MAIAPT + + I G + IDP Sbjct: 598 ----------FAERHLTEDRWKNLAKKIMENGMRNGYLMAIAPTGSTSMIAGTTAGIDPV 647 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 +++ SG V EL W + Sbjct: 648 MSRYFLEEKKSGILPRV----APELTMDTFW---------------------------YY 676 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A ID W + + RQ++IDQAQS+NLY+ +E + +K+ +Y AW G+KT YY+R Sbjct: 677 KNAHHIDQTWSVRACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIR 736 Query: 905 SRS 907 S+S Sbjct: 737 SKS 739 >gi|311032548|ref|ZP_07710638.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus sp. m3-13] Length = 755 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 255/747 (34%), Positives = 374/747 (50%), Gaps = 89/747 (11%) Query: 194 SESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTV-YKKPQKATHHEMQCL 251 ++ +L LI + + E EP++ V +R L +KL++EV KP + ++ L Sbjct: 56 NQDELTNQLILEALNHVDELEPDWTYVASRLLSQKLQQEVCRNRNISKPYTDFYSLIKGL 115 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 ++G+ + ++ ++ L + ++D+ F Y+GL+ L DRY + Sbjct: 116 --------TDQGIYQPQILKAYTHKEVNELEAIIDPQKDYLFTYIGLKTLSDRYLTRDHH 167 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 R+ E+PQ FM +AM L KE V E Y LS+ + +TPT N+G + QLS Sbjct: 168 KRLLELPQERFMIIAMTLMQKEENNRIHYVKEAYWALSNLYMTVATPTFANAGKTYGQLS 227 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF+ TV D L GI+ + + A L+K GGLG +R G+ I G S GVIP++K Sbjct: 228 SCFIDTVDDSLQGIYDSNTDIANLSKSGGGLGVYLGKIRSRGSDIRGFKSVSSGVIPWMK 287 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD+ IPD+F Sbjct: 288 QLNNTAVSVDQLGQRKGAISVYLDVWHKDIFSFLDSKLNNGDERMRTHDLFNGVCIPDMF 347 Query: 490 MKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISA 542 M++V W LF P EV L D Y + + YE + E+ K+ A Sbjct: 348 MEQVENRGDWYLFDPHEVRKLMGYSLEDFYDESVGAGSFRQKYEECINHPELPK-EKVPA 406 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597 + + + ++ ETG P++ ++D N +P H G+++ +NLCTEIT N S+ T Sbjct: 407 IEIMKAIMKGQLETGSPFMFYRDEVNRMNPNAHKGMIYCTNLCTEITQNQSATITKKQYV 466 Query: 598 --------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 VCNL SINL Q L I VR+LDNVI++N + Sbjct: 467 EDGTIITVKTPGDFVVCNLSSINLARTIIAGQ-----LERLIPIQVRMLDNVIELNEIPV 521 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +AK +N +RAIGLG G+ L + I + S EAV ADE E I+FH I AS LA+ Sbjct: 522 LQAKMTNEKYRAIGLGTFGWHHLLAIEGIKWESNEAVLYADELYEKIAFHTIQASCLLAK 581 Query: 704 ERGAYSSFKGSLWDQG-VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 E+G+Y +F+GS W G F + G +S+L W L+K+V G+RN Sbjct: 582 EKGSYPAFEGSDWQTGDYFYKRNYG------------ASSKLDWITLQKQVANYGVRNGY 629 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 MA+AP AT + I G + SIDP + +Y S D+ + +L W Sbjct: 630 LMAVAPNATTSIIAGSTASIDPIFLKVY--SEEKKDYKI--PVTAPDLNAETTW------ 679 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881 + +A+ ID W I + RQK IDQA S NLY+ + Sbjct: 680 ---------------------FYKSAYHIDQHWSIAQNAARQKHIDQAISFNLYVTNTVK 718 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSA 908 K L ++ AW LKTTYY+RS S+ Sbjct: 719 AKALLELHLDAWKQKLKTTYYVRSTSS 745 >gi|325268391|ref|ZP_08135023.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella multiformis DSM 16608] gi|324989245|gb|EGC21196.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella multiformis DSM 16608] Length = 840 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 284/924 (30%), Positives = 460/924 (49%), Gaps = 140/924 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQH 86 +++IKRNG +++ +KIS AI K+F++ + A I V ++ + +T+ R Sbjct: 1 MEIIKRNGEKEAYNNNKISIAIKKSFISTGKEIADNEIAGMVGEVEQFITDNPGLRT--- 57 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146 +EDIQ++VE LM+ GH+ + Y+L+R +R++ R A ++ + Sbjct: 58 --------VEDIQNRVEKCLMEHGHYDEAKNYILFRYQRNEQRQAINY----------IA 99 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYD-GLSESDLETALIF 204 DD ++L ++ ++ S S + L E + + G+S D ALI Sbjct: 100 WAADD--------RQLADVLHRVAREYRERSYSMVTLQEKFASFSKPGMSHRDAIDALIK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI- 260 ++ L E P + ++AR L Y+ QK + E + ++ RY+ Sbjct: 152 AAVELTTPEAPAWEMISARIL-----------SYRSEQKISRLEEELGLKTFYQKVRYMT 200 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 EEG+ + ++ + ++ A+ ++ +R+ + GL +L RY + G +E Q Sbjct: 201 EEGLYGDYILQNYGEEEINEAADFMQPDRNELLNFSGLDLLLKRYVIKSYAGKVLERVQE 260 Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 F+ +A+ LAL E +KE R + Y+LLS +TPTL N+ + QLSSCF+ TV Sbjct: 261 MFLGIALHLALPE-KKEDRLLWVRRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTV 319 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD L GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++K+ NDTAV Sbjct: 320 PDSLDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAV 379 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495 AV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + Sbjct: 380 AVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEED 439 Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWR 547 N WTLF P+E+ L D YG+E+E Y + +++ R R IS + R Sbjct: 440 LNQNWTLFCPNEIMRIKGYCLEDCYGEEWERRYLDCVNDQRISR------RVISIKDIVR 493 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597 +L ETG P+ +D N +P H G+++ SNLCTEI N + ET Sbjct: 494 LVLRSAVETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDG 553 Query: 598 -------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 VCNL S++L D +++ + T VR LDNVI +N + + Sbjct: 554 DTVVVTKTRPGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVP 610 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 A+ +N +R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS +LA+E Sbjct: 611 YARITNQRYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSDLARE 670 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G+Y F+GS W G + D G W E+++ V GMRN+ + Sbjct: 671 KGSYQFFEGSEWQTGAY-FDKRGY-------------GSAEWQEVRRTVARQGMRNAYLL 716 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A+APT++ + I G + +DP + +++ V EL W Sbjct: 717 AVAPTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW-------- 764 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + + Sbjct: 765 -------------------MYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMR 805 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ +Y AW G+KT YY+RS+S Sbjct: 806 QVLDLYLLAWKSGVKTLYYVRSKS 829 >gi|317488667|ref|ZP_07947207.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA] gi|316912226|gb|EFV33795.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA] Length = 845 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 294/915 (32%), Positives = 443/915 (48%), Gaps = 117/915 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+ KRNG V +++ KI RA+ AF +V G D + E+ + Q Sbjct: 1 MQISKRNGTVEAYEAGKIKRAMGAAFASV---GTVLDDDEADRLIARIERAMASAEQGEG 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + V +ED+QD VE +LM++ H++ + Y+LYRE+R+ RAA+ + P P L Sbjct: 58 GS--VSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALP-- 113 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L S E EE L +S+K S + DG L L+ ++ Sbjct: 114 ---GVLASVQK---EFPGEE--YELAHLSAKF-QSFAKPDAADG----QLLAMLVKAAVE 160 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L +E P + + AR L+ + R + + A H E + + EEG+ Sbjct: 161 LTTQEAPRWEIIAARLLMVQFDRALAERL-----AARHIET---FAQKVAFLTEEGLYGD 212 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM 326 + + +L A + R+ F Y GLQ+L DRY + + G+ +E PQ F+ +A+ Sbjct: 213 YILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIAL 272 Query: 327 GLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 LA++E E+ FY++LS+ +TPTL N+ QLSSCF+ TVPD L GI+ Sbjct: 273 HLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGIY 332 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ A ++KY GG+G + VR G+ I G +G + GVI ++++ANDTAVAV+Q G R Sbjct: 333 RSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGMR 392 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502 +GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F ++ N W L Sbjct: 393 QGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYLM 452 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P E+ L D YG+E+ Y E AD IK R I + R ++ ETG Sbjct: 453 CPHEILTVKGYALEDCYGEEWTRKY--LECVAD-ARIKK-RAIPIKDVIRLIIKSAVETG 508 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------------- 597 P+ +D N +P +H G+++ SNLCTEI N + E Sbjct: 509 TPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTKP 568 Query: 598 ---AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VCNL S++ L H + D +LA +AVR LDNVID+N + A+ +N +R Sbjct: 569 GAFVVCNLASLS-LGHI--DMGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQYR 625 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+ G+ L I + S E + A+ + + A+ AS +A+E+GAY F+GS Sbjct: 626 PIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEGS 685 Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 W G + RD L R W EL + V G+RN +A+APT++ + Sbjct: 686 GWQTGEY----------FRDRGLTDGR-----WAELARDVAEHGLRNGYLLAVAPTSSTS 730 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP +++ +G V EL W Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRV----APELSMDTFW----------------- 769 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + A ID W + + RQ+ IDQAQS+NLY+ +E + +++ +Y A Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 820 WEEGMKTIYYVRSKS 834 >gi|325831680|ref|ZP_08164897.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella sp. HGA1] gi|325486551|gb|EGC89000.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella sp. HGA1] Length = 845 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 294/915 (32%), Positives = 443/915 (48%), Gaps = 117/915 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+ KRNG V +++ KI RA+ AF +V G D + E+ + Q Sbjct: 1 MQISKRNGTVEAYEAGKIKRAMGAAFASV---GTVLDDDEADRLIARIERAMASAEQGEG 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + V +ED+QD VE +LM++ H++ + Y+LYRE+R+ RAA+ + P P L Sbjct: 58 GS--VSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALP-- 113 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L S E EE L +S+K S + DG L L+ ++ Sbjct: 114 ---GVLASVQK---EFPGEE--YELAHLSAKF-QSFAKPDAADG----QLLAMLVKAAVE 160 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L +E P + + AR L+ + R + + A H E + + EEG+ Sbjct: 161 LTTQEAPRWEIIAARLLMVQFDRALAERL-----AARHIET---FAQKVAFLTEEGLYGD 212 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM 326 + + +L A + R+ F Y GLQ+L DRY + + G+ +E PQ F+ +A+ Sbjct: 213 YILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIAL 272 Query: 327 GLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 LA++E E+ FY++LS+ +TPTL N+ QLSSCF+ TVPD L GI+ Sbjct: 273 HLAMEERPDERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGIY 332 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ A ++KY GG+G + VR G+ I G +G + GVI ++++ANDTAVAV+Q G R Sbjct: 333 RSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGMR 392 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502 +GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F ++ N W L Sbjct: 393 QGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYLM 452 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P E+ L D YG+E+ Y E AD IK R I + R ++ ETG Sbjct: 453 CPHEILTVKGYALEDCYGEEWTRKY--LECVAD-ARIKK-RAIPIKDVIRLIIKSAVETG 508 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------------- 597 P+ +D N +P +H G+++ SNLCTEI N + E Sbjct: 509 TPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTKP 568 Query: 598 ---AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VCNL S++ L H + D +LA +AVR LDNVID+N + A+ +N +R Sbjct: 569 GAFVVCNLASLS-LGHI--DMGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQYR 625 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+ G+ L I + S E + A+ + + A+ AS +A+E+GAY F+GS Sbjct: 626 PIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEGS 685 Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 W G + RD L R W EL + V G+RN +A+APT++ + Sbjct: 686 GWQTGEY----------FRDRGLTDGR-----WAELARDVAEHGLRNGYLLAVAPTSSTS 730 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP +++ +G V EL W Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRV----APELSMDTFW----------------- 769 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + A ID W + + RQ+ IDQAQS+NLY+ +E + +++ +Y A Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 820 WEEGMKTIYYVRSKS 834 >gi|313115921|ref|ZP_07801348.1| ribonucleoside-diphosphate reductase, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310621685|gb|EFQ05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 847 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 289/928 (31%), Positives = 455/928 (49%), Gaps = 141/928 (15%) Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 E+I+ +++ KRNG F KI A+ KAF +G+G R D I + + Sbjct: 6 ERIE-MEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMDEI-------LATV 54 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAP 140 L + + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS +R + + + D Sbjct: 55 LNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDS 114 Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 + L+ + D T ++ L+M E C G++E + Sbjct: 115 LDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTEDERAE 155 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 AL ++ L E P + + AR L R + Q+ + LY + RY Sbjct: 156 ALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK--LRY 206 Query: 260 I-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EM 316 + ++G+ + ++ + L ERD F Y GL +L RY + + SR+ E Sbjct: 207 LTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQ-SRSRVPLET 265 Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 PQ F+ +A+ LA+ E +++ FY++LS +TPT+ N+ + QLSSCF+ T Sbjct: 266 PQEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDT 325 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD L GI+ +L A ++K+ GG+G + VR G+ I G G + GVI ++++ NDTA Sbjct: 326 VPDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTA 385 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + Sbjct: 386 VAVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEE 445 Query: 496 N--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 N A W L P E+ L D +G E+E + Y + I+ R ++ + R Sbjct: 446 NIDAPWHLMCPHEILTVKGYALEDYWGTEWE---KRYLDCVNDPRIEK-RSVTVKDIVRL 501 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSE------- 595 +L ETG P+ +D N +P H G+++ SNLCTEI N S+E Sbjct: 502 VLRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGD 561 Query: 596 ----------ETAVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIE 644 E VCNL S++L N D + T+ TA+R LDNVID+N + +E Sbjct: 562 TIVVTATRPGEFVVCNLASLSL----GNLPVEDEAYMERTVETAIRALDNVIDLNFYPLE 617 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 A+ +N +R+IGLG+ G+ L I + S E + D E I++ A+ A LA+E Sbjct: 618 YARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALARE 677 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G Y+ F+GS W G + + G +E W L K V GMRN+ + Sbjct: 678 KGRYALFEGSDWQTGAY-FEKRGYTSE-------------KWRALAKTVAVQGMRNAYLL 723 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A+APT++ + + G S IDP ++ F + E K Sbjct: 724 AVAPTSSTSILSGTSAGIDP----------------IMKKFFLEEKK------------- 754 Query: 825 KYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879 GS+ + R+ +L + A ID W + +A RQ+ IDQAQS+NLY+ ++ Sbjct: 755 ----GSM--LPRVAPELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITND 808 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 S +++ +Y +AW G+KT YY+RS++ Sbjct: 809 YSMRQVLRLYLEAWRAGVKTIYYVRSKA 836 >gi|160942849|ref|ZP_02090089.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii M21/2] gi|158445901|gb|EDP22904.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii M21/2] Length = 847 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 285/927 (30%), Positives = 451/927 (48%), Gaps = 139/927 (14%) Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 E+I+ +++ KRNG F KI A+ KAF +G+G R D I + + Sbjct: 6 ERIE-MEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMDEI-------LATV 54 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAP 140 L + + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS +R + + + D Sbjct: 55 LNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDS 114 Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 + L+ + D T ++ L+M E C G++E + Sbjct: 115 LDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTEDERAE 155 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 AL ++ L E P + + AR L R + Q+ + LY + RY Sbjct: 156 ALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK--LRY 206 Query: 260 I-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMP 317 + ++G+ + ++ + L ERD F Y GL +L RY + + +E P Sbjct: 207 LTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRAPLETP 266 Query: 318 QAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q F+ +A+ LA+ E +++ FY++LS +TPT+ N+ + QLSSCF+ TV Sbjct: 267 QEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDTV 326 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD L GI+ +L A ++K+ GG+G + VR G+ I G G + GVI ++++ NDTAV Sbjct: 327 PDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAV 386 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + +N Sbjct: 387 AVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEEN 446 Query: 497 --AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 A W L P E+ L D +G E+E + Y + I+ R ++ + R + Sbjct: 447 IDAPWHLMCPHEILTVKGYALEDYWGTEWE---KRYLDCVNDPRIEK-RSVTVKDIVRLV 502 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------------ 591 L ETG P+ +D N +P H G+++ SNLCTEI N Sbjct: 503 LRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGDT 562 Query: 592 -----SSSEETAVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEK 645 + E VCNL S++L N D + T+ TA+R LDNVID+N + +E Sbjct: 563 IVVTATRPGEFVVCNLASLSL----GNLPVEDEAYMERTVETAIRALDNVIDLNFYPLEY 618 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+ +N +R+IGLG+ G+ L I + S E + D E I++ A+ A LA+E+ Sbjct: 619 ARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAREK 678 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y+ F+GS W G + + G +E W L K V GMRN+ +A Sbjct: 679 GRYALFEGSDWQTGAY-FEKRGYTSE-------------KWRALAKTVAVQGMRNAYLLA 724 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 +APT++ + + G S IDP ++ F + E K Sbjct: 725 VAPTSSTSILSGTSAGIDP----------------IMKKFFLEEKK-------------- 754 Query: 826 YHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 GS+ + R+ +L + A ID W + +A RQ+ IDQAQS+NLY+ ++ Sbjct: 755 ---GSM--LPRVAPELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDY 809 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 S +++ +Y +AW G+KT YY+RS++ Sbjct: 810 SMRQVLRLYLEAWRAGVKTIYYVRSKA 836 >gi|149182582|ref|ZP_01861053.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. SG-1] gi|148849718|gb|EDL63897.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. SG-1] Length = 746 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 256/757 (33%), Positives = 382/757 (50%), Gaps = 99/757 (13%) Query: 193 LSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ L+ LI ++ I +EP + V A L KL R + P+K Sbjct: 45 VTAEQLDNMLILAAVERISSQEPEWTYVAADIYLRKLYRASAESRGTDPEKGYGS----- 99 Query: 252 YPEYFCRYIEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 + E + E G+ RLL + D ++ L + ERD F Y+G+ L +RY + Sbjct: 100 FYEMMAQLEEMGIYDTRLLQKYSRD-EIDSLERIINPERDGLFTYIGIVTLAERYLAKSH 158 Query: 311 -GSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 G IE+PQ FM +AM L E E+++ + E Y LS+ + +TPTL N+G + Q Sbjct: 159 AGHFIELPQERFMIIAMTLLADEPEEKRLTLIQEAYWALSNLYMTVATPTLANAGKSYGQ 218 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ TV DDL I+ + + + L+K GG+G +R G+ I G G S G+IP+ Sbjct: 219 LSSCFIDTVEDDLRSIYDSNTDVSTLSKNGGGIGIYLGKIRSRGSDIKGFKGVSSGIIPW 278 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K N+TAV+V+Q G+R+GA+ YL+ WH D+ FLD + N GD+R+RTHD+ T +PD Sbjct: 279 MKQLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFPFLDSKLNNGDERQRTHDLFTGVCLPD 338 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------VF---- 537 LFM++V + W LF P EV + G E ++Y+ Q +G + VF Sbjct: 339 LFMEQVEKRGDWYLFDPHEV---RKVMGFSLE---DHYDEQPGQGSFREKYWACVFHPEL 392 Query: 538 --RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 + + A+ L++ ++ ETG P++ ++D N + QH G+++ SNLCTEIT N S+ Sbjct: 393 SHQTVPAIELFKSIMISQLETGTPYMFYRDTVNRFNANQHKGMIYCSNLCTEITQNMSAT 452 Query: 596 -------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + VCNL S++L + L I AVR+LDNVI Sbjct: 453 VMEEERVEDGTIITYKKPGDYVVCNLSSLSLAKAVQDG-----VLKEVISIAVRMLDNVI 507 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 DIN + +A+ +N +R IGLG G+ L L I + S EA+E D E I+F I Sbjct: 508 DINDIPVLQAQLTNERYRGIGLGTYGWHHLLALKGIKWESEEALEYCDSLYEDIAFFTIK 567 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA+E+GAY F GS W G + E RD + W ELK+ VK Sbjct: 568 ASAALAKEKGAYPYFTGSEWAAGSY--------FEKRDYTSPR------WLELKEEVKEH 613 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RN MA+AP+++ + I G + SIDP ++ Y S D+ + +L W Sbjct: 614 GVRNGYLMAVAPSSSTSLIAGSTASIDPVFRLEY--SEEKKDYKI--PVTAPDLSPHTTW 669 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + TA+ ID W I+ ++RQ+ IDQ+ S NLY Sbjct: 670 ---------------------------YYKTAYNIDQHWSIKQNAKRQRHIDQSISFNLY 702 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + ++ K L I+ AW GLKTTYY+RS S ++ Sbjct: 703 VRNDIKAKALLDIHLHAWKAGLKTTYYVRSTSNAEID 739 >gi|182419342|ref|ZP_02950594.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum 5521] gi|237666539|ref|ZP_04526524.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376673|gb|EDT74245.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum 5521] gi|237657738|gb|EEP55293.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 743 Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 250/762 (32%), Positives = 382/762 (50%), Gaps = 101/762 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 DG+SE + +LI + L + EPN+ ++ +L EV + + ++ Sbjct: 37 DGMSEKHIRKSLIQVALELTTDMEPNWQFAASKIYTYELYDEVR----ENRGLNSSEDLY 92 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 Y ++ + + G+ + + ++ D++ L +K ERDF F Y G+ +L RY + Sbjct: 93 KNYYDFISQLTDRGLYGKYILDNYTKEDILELEKTIKPERDFLFNYSGINLLSKRYLVQD 152 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRH 365 N + +E+PQ FM +AM LA+ E +K KR A FY++LSS +TPT+ N+ Sbjct: 153 YNRNPVELPQQMFMGIAMHLAIPE-DKSKRVYWAKRFYDVLSSLKATMATPTMSNARKPF 211 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSCF+ TV D L GI+ +L A ++K+ GG+G VR LG+ I G G S G+I Sbjct: 212 YQLSSCFIDTVEDSLEGIYKSLDNFAQVSKFGGGMGIYMGKVRALGSSIRGFKGASGGII 271 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P++K+ NDTAVAV+Q G R G+V +L+ WH D+ EFL +R N GDDR++ HD+ Sbjct: 272 PWVKLFNDTAVAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVFPGLCY 331 Query: 486 PDLFMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFR 538 PDLF K N + W + P E+ + L D YG E+E Y YE D K R Sbjct: 332 PDLFWKLAENNIDSDWYMMCPHEIKEIKGYSLEDFYGDEWEEKY--YECVNDERIEK--R 387 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET- 597 +S + R ++ ETG P+ ++D N +P +H G+++SSNLCTEI N S E Sbjct: 388 VMSVKDIVRLIIKSAAETGAPFAFYRDTVNKMNPNKHNGIIYSSNLCTEIMQNMSPMEIN 447 Query: 598 ----------------------AVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633 VCNL S+ L + + + DY + T +R +D Sbjct: 448 KSEIINEDGSCIVTQNIIPGDFVVCNLSSVVLGNIDVCSEEEVDY-----VVETQIRAMD 502 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NVID+N +++ A+ +N +RAIGLG G+ L I + + + ADE E I+++ Sbjct: 503 NVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNRIHWTEEKHKDFADEVYERINYY 562 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ AS+++A+E+GAY+ FK S WD G D + W L+K + Sbjct: 563 AVKASMKIAKEKGAYNLFKESDWDNG--------------DYFELRGYKDEKWCALRKEI 608 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 K GMRN +A+AP + A I G S+ IDP V+ F + E K Sbjct: 609 KENGMRNGYLLAVAPNGSTATIAGTSEGIDP----------------VMARFYLEEKK-- 650 Query: 814 DLWDEAMISDLKYHDGSI--GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 GSI + DD + A+ ID W ++ RQ+ IDQ Q Sbjct: 651 ---------------GSIIPKTAPNLNDDNYWYYNPAYNIDQAWSVQMNGIRQRHIDQGQ 695 Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 S NLY+ + + +++ +Y +A G+K+ YY+RS+S E Sbjct: 696 SFNLYITNNYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTE 737 >gi|229542077|ref|ZP_04431137.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus coagulans 36D1] gi|229326497|gb|EEN92172.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus coagulans 36D1] Length = 744 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 243/713 (34%), Positives = 362/713 (50%), Gaps = 86/713 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLK 286 R L +Y + K H++ Y ++ + +E+G+ + L + ++ L + Sbjct: 72 RIYLHKLYAEAAKNRHYDPTLKYGSFYDLIRQLVEKGIYSPKLLDKYTKQEIETLGRLID 131 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKR---AVEF 342 E+D F Y GL L RY + E+PQ +M +AM L +++ ++E R E Sbjct: 132 PEKDLLFTYPGLYTLVTRYLASDFEKHVYELPQERWMVIAMYL-MQDEQQETRMEHVKEA 190 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y LS+ + +TPTL N+G H QLSSCF+ TV D L I+ + + A L+K GG+G Sbjct: 191 YWALSNLYMTVATPTLANAGKTHGQLSSCFIDTVADSLQSIYDSNTDIAQLSKNGGGIGV 250 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 +RG G+ I G G S GV+P++K N+TAV+V+Q G RKGA+ YL+ WH D+E+F Sbjct: 251 YMGKIRGRGSAIKGFPGMSSGVVPWIKQLNNTAVSVDQLGTRKGAITVYLDVWHRDIEDF 310 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE 517 LDL+ N GDDR R D+ T IPD FM++V + W +F P EV + L D Y +E Sbjct: 311 LDLKLNNGDDRLRARDIYTGVCIPDYFMEQVEKRGDWYVFDPHEVKEVMGFALEDFYDEE 370 Query: 518 FEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 E YE +++ RK+ A+ + ++++ ETG P++ ++D N ++P H Sbjct: 371 KGKGSWREKYE-ACIHADLRSKRKVPAIEIMKRIMRSQLETGAPFMFYRDEVNRQNPNSH 429 Query: 576 VGVVHSSNLCTEITLNSSSEET--------------------AVCNLGSINLLAHFANNQ 615 G+++ SNLCTEI N S E VCNL SINL + Sbjct: 430 KGIIYCSNLCTEIAQNQSPTELIEEWIKEENVIVKKYRSGDYVVCNLSSINLGKAVPDGV 489 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 L IR VR+LD+VID+N I++ + +N +RA+GLG G+ L L I + Sbjct: 490 -----LERLIRIQVRMLDHVIDVNTLPIKQVQITNKKYRAVGLGTFGWHHLLALEGIEWE 544 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 + AVE AD+ E I+++AI +S+ELA+E+G+Y +F GS W G + G +E Sbjct: 545 TEAAVEYADKLYENIAYYAIKSSMELAREKGSYPAFPGSKWSTGAY-FTGKGYTSE---- 599 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W L + VK G+RN MA+AP AT + I G + SIDP +Q Y++ Sbjct: 600 ---------RWLALAEEVKKYGLRNGYLMAVAPNATTSIIAGSTASIDPVFQPYYMEEKK 650 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 F V L D NI R +A+++D W Sbjct: 651 DYRFPVTAPDL---------------------DHRTYNIYR---------RSAYKLDQRW 680 Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + + RQK IDQ+ S N Y+ + L ++ QAW GLKTTYY+RS S Sbjct: 681 SVRQNAARQKHIDQSISFNFYVPYNIRAQVLLDLHLQAWKSGLKTTYYVRSTS 733 >gi|260591986|ref|ZP_05857444.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella veroralis F0319] gi|260536270|gb|EEX18887.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella veroralis F0319] Length = 840 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 282/921 (30%), Positives = 458/921 (49%), Gaps = 134/921 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + +IKRNG ++ +KI+ AI K+F++ + I+ ++I + E V +++ N Sbjct: 1 MDIIKRNGESERYNNNKIAIAIKKSFIST-----GKPIKDEEIAAMVAE--VEQIIIDNP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 V E+IQ+QVE LM GH+ + ++L+R +R++ R A + + M Sbjct: 54 DQRTV--EEIQNQVEKHLMMHGHYDEAKNFILFRYQRNEQRKAIND----------IARM 101 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207 DD L + ++ + A + V S + L E + N+ +S + LI ++ Sbjct: 102 ADDTELTT-------VLQDVAREYRERVYSMVTLQEKFANLCKPSMSHKEAIDTLIKAAV 154 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EEG 263 L E P + ++AR L Y+ QK E + ++ +Y+ EG Sbjct: 155 ELTTPEAPAWEMISARIL-----------SYRAEQKIKKQEDEIGIDGFYNKLKYMTSEG 203 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322 + + ++ + ++ A +K ER+ Y GL +L RY + + G IE Q ++ Sbjct: 204 LYGEYILQNYTEEEINEAATFIKEERNKLLNYSGLDLLLKRYVIKNYAGKAIERVQEMYL 263 Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 +A+ LA+ E +KE R + Y++LS +TPTL N+ + QLSSCF+ TVPD Sbjct: 264 GIALHLAMPE-QKENRLMWVHRIYDMLSKLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 322 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++++ NDTAVAV+ Sbjct: 323 LDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVD 382 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--A 497 Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K +N Sbjct: 383 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMADENLDQ 442 Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKML 550 W LF P+E+ L D YG+E+E Y + +++ R R IS + R +L Sbjct: 443 NWYLFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLTR------RVISIKDIIRLVL 496 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597 ETG P+ +D N +P H G+++ SNLCTEI N + ET Sbjct: 497 RSAVETGTPFTFNRDTVNRANPNHHKGMIYCSNLCTEIAQNMAPIETVSKTIETKDGETI 556 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S++L D +++ + T VR LDNVI +N + + A+ Sbjct: 557 VVTTTKPGEFVVCNLASLSLGRLPLE---DEEQMREKVATIVRALDNVISLNFYPVPYAE 613 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS LA+E+G+ Sbjct: 614 ITNQKYRSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRSAILASSNLAKEKGS 673 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G++ D G ++ W E++K V GMRN+ +A+A Sbjct: 674 YQYFEGSDWQTGLY-FDKRGYDSD-------------EWKEVRKTVALQGMRNAYLLAVA 719 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + +DP + +++ V EL W Sbjct: 720 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 764 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 ++ +A+ I+ W I+++ RQ+ IDQAQS+NLY+ ++ + +++ Sbjct: 765 ----------------MYKSAYLINQKWSIKASGVRQRHIDQAQSMNLYITNDFTMRQVL 808 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 809 DLYLLAWKSGVKTIYYVRSKS 829 >gi|227498393|ref|ZP_03928543.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] gi|226903855|gb|EEH89773.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] Length = 760 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 251/802 (31%), Positives = 392/802 (48%), Gaps = 106/802 (13%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG + ++ + ++ AC GL + ++ DG++ ++ LI RT I Sbjct: 9 DGHFEPLSVEKTKRMIAFACLGLDSCDPMELEMDSKLQFVDGMTTKQIQQTLI---RTAI 65 Query: 211 EK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 EK P++ V AR L L +E + ++ + + L Sbjct: 66 EKVIPSRHEGGGVPLQEMNPDWQFVAARLFLFDLYKEA--AIQRRYKAFGYGNFSNL--- 120 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 +++ A + +L L + +K +RD+ F Y GL++L DRY + N Sbjct: 121 -IHMLVDKKKYADFFVTDYTEDELQELGDYIKPKRDYLFNYEGLKLLADRYLVRGFNKEV 179 Query: 314 IEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E+PQ FM +AM LAL E + K A +FY+L+S +TPTL N+GT QLSSCF Sbjct: 180 YELPQERFMAIAMHLALVEGKNKVAYAKKFYDLMSELKMTTATPTLANAGTPFHQLSSCF 239 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++++ N Sbjct: 240 VAGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWVRLYN 299 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAV+Q G+RKG L+ WH D EF++LR N GDDRR+ HD+ + +P+LFM+R Sbjct: 300 DTAVAVDQLGRRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPSISVPNLFMER 359 Query: 493 VTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 + + +TLF P EV+ L D Y E + A+ + ++ + A+ + + Sbjct: 360 LIKRENFTLFDPHEVNTVMGFALEDFYDTEEDKAFTEHYLACEKDSRLHGISVPALEMMK 419 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN---------------- 591 K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 420 KIMKSAVETGTPFIFFRDTVNEANPNKHAGMIYASNLCHEIAQNVGFTNLKKEILEDDGT 479 Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 ++ + CNL SINL + D D L I VR+LDNVI IN + +++ Sbjct: 480 ITTVTAPGDMVTCNLNSINL------GKIDEDFLEEQIALQVRMLDNVITINQTPVPESR 533 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + +RAIGLG G+ L + + S E + AD E I+++AI AS+EL++E+GA Sbjct: 534 LTCDKYRAIGLGTSGYHHYLVKHGLRWESKEHIAAADALFEKIAYYAIKASMELSKEKGA 593 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y +FKGS WD G + G +E W L V GMRN +A+A Sbjct: 594 YPAFKGSEWDTGKY-FTRRGYTSE-------------KWQRLAADVHKYGMRNGYLLAVA 639 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT + +NI + IDP ++ +++ G FT + +L + W Sbjct: 640 PTGSTSNIANTTAGIDPIFKKFFIEEK-QGSFTPKTA---PDLNPKTFW----------- 684 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 ++ A ID W I + + RQ+ IDQAQS NLY+ P K + Sbjct: 685 ----------------LYKEAHTIDQQWSIRANAARQRHIDQAQSFNLYI-TPRMKASEI 727 Query: 888 --IYRQAWLMGLKTTYYLRSRS 907 +Y +A+ G+KT YY+R++S Sbjct: 728 LNLYIEAYKQGIKTIYYVRNQS 749 >gi|304439120|ref|ZP_07399039.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372479|gb|EFM26066.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 840 Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 293/926 (31%), Positives = 449/926 (48%), Gaps = 144/926 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KR+G V FD KIS AI K+++ + I +T++ V ++ K Sbjct: 1 MNIRKRDGRVVDFDREKISTAIKKSYIGIMKPFED------SYIDKITDKIVEKVEDLYK 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 I +E IQD VE L++ + + Y+ YR +HSK D + Sbjct: 55 DT-IPTVEQIQDLVELELIEEKEIDVVKSYITYR---------AAHSK-DRQVLRGFNEY 103 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIFSS 206 ++D TL+S + + + L + S ++ K+M S+ D LI ++ Sbjct: 104 LEDDTLVSI----IRDVRNDYSRDLYPIESLFHKFSSFCKKDM----SQDDSRVMLIRAA 155 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREV------LTTVYKKPQKATHHEMQCLYPEYFCRY 259 L KE P++ + +RF L ++ + T Y+K + T EM LY +Y Sbjct: 156 SELTTKEAPDWEYIASRFYRYDLELKINENYKGIDTFYEKIKNLT--EMN-LYGKYIL-- 210 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318 E+ D+ L ++ ERD Y + +L RY + + ++ E PQ Sbjct: 211 -----------ENYTKEDIDKLEKEIVPERDKLLTYSSIDLLAKRYLIRSHDMKVLERPQ 259 Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 FM +AM LAL E + K + A Y +LS +TPT+ N+ QLSSCF+ TV Sbjct: 260 EMFMGIAMHLALPEGKNKVEWATRIYTVLSKLQVTVATPTMNNARKPFYQLSSCFIDTVS 319 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI +L++ NDTAVA Sbjct: 320 DTLEGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWLRLVNDTAVA 379 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496 V+Q G R+G+ YL+ WH D+ EFL +R N GDDR + HD+ A PDLF + N Sbjct: 380 VDQLGVRQGSCAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVSYPDLFFRLAKNNI 439 Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 A W +F P E+ L D YG EFE Y YE D K R IS + R ++ Sbjct: 440 DADWYMFDPHEIMVKKGYCLEDYYGDEFEKKY--YECVHDANISK--RVISVKDMVRLII 495 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------ 598 L ETG P+ F+D N +P +H G+++SSNLCTEI N S+ E Sbjct: 496 KSLTETGTPFAFFRDAVNKMNPNKHKGMIYSSNLCTEIMQNMSAIEAVSQEIETEEGDTV 555 Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL S+ ++++ N D +++ + TAVR LDNVID+N + + AK Sbjct: 556 VVTKTKPGDFVVCNLASL-VISNI--NLEDDEEVEYVVSTAVRGLDNVIDLNYYPLPYAK 612 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERG 706 +N +RAIGLG G+ AL I ++ E +E AD E ++++A+ AS E+A+E+G Sbjct: 613 ITNSKYRAIGLGTSGYHHALIKEGIAFSDEEEHLEFADRVYEKLNYYAVKASNEIAKEKG 672 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 AY FKGS WD G + + W++L+ + GMRN MA+ Sbjct: 673 AYEYFKGSDWDNGNY--------------FELRGYHGKEWEDLRASIHEHGMRNGYIMAV 718 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT + + I G + ++DP V+ F + E K Sbjct: 719 APTGSTSIIAGTTAAVDP----------------VMKRFFLEEKK--------------- 747 Query: 827 HDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881 G+I I R+ DL ++ A EID +I++ R + IDQ QS+NLY+ + + Sbjct: 748 --GAI--IPRVAPDLNTRTFWLYEQAHEIDQSLIIKATGVRGRHIDQGQSVNLYITSDFT 803 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y +A GLK+ YY+RS+S Sbjct: 804 MRQILNLYIRAMEEGLKSLYYVRSKS 829 >gi|15613064|ref|NP_241367.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus halodurans C-125] gi|10173114|dbj|BAB04220.1| ribonucleoside-diphosphate reductase alpha subunit [Bacillus halodurans C-125] Length = 726 Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 250/751 (33%), Positives = 374/751 (49%), Gaps = 95/751 (12%) Query: 191 DGLSE-SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D LS+ + LE+ + + + ++P + +TAR LE+L V K Q+ Sbjct: 26 DVLSQGASLESMRMKAMDEISAEQPEWTFITARIYLEELYNSV------KEQRGLAKPYT 79 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y E +++G+ + L ++ L L E+D F Y+GL+ L DRY + Sbjct: 80 QFY-ELIEVLVDKGIYEKDLLNRYTKEEINELGEHLNQEKDELFTYIGLKTLADRYLARL 138 Query: 310 -NGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP 366 + + +E+PQ FM +AM L KE ++ ++ E Y LS+ + +TPT N+G Sbjct: 139 YDRTLMELPQERFMVIAMSLMKKEVNSQRLSLVKEAYWALSNLYMTVATPTFANAGKAVG 198 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSCF+ TV D L GIF + + A ++K GGLG +R G+ I S GV+P Sbjct: 199 QLSSCFIDTVDDSLRGIFDSCTDAATVSKSGGGLGIYLGKIRAKGSSIKNYQNVSSGVLP 258 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++K N+ AV+V+Q G+R+GA+ YL+ WH D+ FLD + N GD+R+RTHD+ TA +P Sbjct: 259 WMKQLNNVAVSVDQLGQRQGAIAVYLDIWHKDIFSFLDAKLNNGDERQRTHDLFTAVSLP 318 Query: 487 DLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKV 536 DLFM+ V W LF P E+ L D Y ++ F YE D +V Sbjct: 319 DLFMEAVEARDNWYLFDPHEIRQKMGFSLEDSYDEQKGSGTFRERYEACVNNPDLSRTEV 378 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--- 593 A+ + ++++ ETG P++ ++D N +P +H G+V+ SNLCTEI N S Sbjct: 379 ----PAIEIMKRIMISQLETGSPFMYYRDEANRMNPNKHEGMVYGSNLCTEIIQNMSPTT 434 Query: 594 --SEET--------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 E+T VCNL S++L + D L I VR+LDNVID Sbjct: 435 VVEEKTEDGKILITKQPGDYVVCNLSSLSLARVVED-----DVLERLIPIQVRMLDNVID 489 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++A+++N +RAIGLG G+ L I + S EA+ ADE E I++ I A Sbjct: 490 VNRIEVKQAEQTNQKYRAIGLGTYGWHHLLAKKGIAWESEEAIRYADELYETINYLTIQA 549 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S++LA+E+GAY F GS W+ G + + + W EL ++VK G Sbjct: 550 SMKLAEEKGAYPMFGGSDWETGEY--------------FERRQYTTDKWTELAEQVKEKG 595 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RN +A+AP AT A I G + SIDP +Q YV+ + V +L W Sbjct: 596 LRNGYLLAVAPNATTALIGGTTASIDPIFQKTYVEEKKNYRIPVT----APDLSPETTW- 650 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + +A+ ID W I RQ+ +DQ+ S NLY+ Sbjct: 651 --------------------------YYKSAYHIDQTWSIRQNGARQRHVDQSISFNLYV 684 Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS 907 K+L ++ AW GLKTTYYLRS S Sbjct: 685 SNTIRAKELLELHLLAWKEGLKTTYYLRSTS 715 >gi|168186577|ref|ZP_02621212.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum C str. Eklund] gi|169295443|gb|EDS77576.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum C str. Eklund] Length = 764 Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 258/823 (31%), Positives = 407/823 (49%), Gaps = 116/823 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ +G + ++ + +V AC GL+ + ++ D +S +++ LI Sbjct: 3 IKVKKRNGEYEKLHVEKTKKMVSLACEGLEGCDPLELEIDSRIQFRDCMSTKEIQKILI- 61 Query: 205 SSRTLIEK-----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 +T IEK N+ V AR L L +E K + ++ Sbjct: 62 --QTAIEKVIYIDKNNHDNISSKKTNINWQYVAARLLAFDLYKEA------KINRDYNYF 113 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 + R + G+ + L E+ D ++ L++ ++ +RD F Y GL++L DRY + Sbjct: 114 GYGDFLYLVKRLVNIGLYGKYLIENYSDEEIKELSDYIEPKRDELFNYEGLKLLNDRYLI 173 Query: 308 H-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 NG +E+PQ FM +AM LA+ E + K A +FY+L+S +TPTL N+GT Sbjct: 174 KGFNGEILELPQERFMVIAMHLAIPEGKNKIYYAKKFYDLISKLKMTVATPTLGNAGTPF 233 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSCF++ V D+L+ I+ Q+ + ++K+ G LG VR L + I G S GVI Sbjct: 234 YQLSSCFISVVGDNLWSIYDVNQKFSQVSKHGGALGIYIGKVRALNSEIRGHKNASGGVI 293 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P++K+ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ T+ I Sbjct: 294 PWIKLYNDTAVAVDQLGKRKGGAAITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSI 353 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE---NYERQADRGEIKVFRK--- 539 PD+FM R+ W+LF P V H L G + E ++ N E E + + Sbjct: 354 PDIFMTRLLNRESWSLFDPYMV---HKLMGYKLEDYFDDEDNKEFTKRYLECEANKNLQR 410 Query: 540 --ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---- 593 +S + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 411 DTVSCLDIMKKIMKSAVETGTPFIFFRDTVNRANPNKHRGMIYSSNLCHEIAQNMSESEL 470 Query: 594 -------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 S + CNL SINL ++ ++L I +R+LDN Sbjct: 471 ISEESTYKNGFNEVVSRVRSGDMVTCNLNSINL------SKVSREELKEAIPLQIRMLDN 524 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI +N ++++ ++ +RAIGLG G+ L I + S E ++ D E I++ + Sbjct: 525 VISLNKLPVKESSITSDKYRAIGLGTSGYHQYLAKNRIKWESEEHIKEVDALFEDIAYES 584 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS+ELA+E+GAY F+GS W G + + G +E W +L+ V Sbjct: 585 IKASMELAKEKGAYPEFEGSEWQSGKY-FERRGYNSE-------------RWSKLRDDVA 630 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN MA+APT + +NI + IDP ++ +++ G FT + +L + Sbjct: 631 KYGIRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEEK-KGSFTPKTA---PDLNNDN 686 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A I+ W I++ + RQK IDQ+QS N Sbjct: 687 FW---------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFN 719 Query: 875 LYLDEPSGKKLDFI--YRQAWLMGLKTTYYLRSRSATSVEKST 915 LY+ P K D + Y ++W G+KT YY+R++S E S+ Sbjct: 720 LYI-TPDIKAKDILDMYTESWRQGIKTIYYIRNKSIEMNECSS 761 >gi|160881348|ref|YP_001560316.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium phytofermentans ISDg] gi|160430014|gb|ABX43577.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium phytofermentans ISDg] Length = 764 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 257/792 (32%), Positives = 391/792 (49%), Gaps = 118/792 (14%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK---------------- 212 AC GL+ + + DG+S +++ L+ +T IEK Sbjct: 27 ACEGLEGCDPIELELDARIQFVDGMSTKEIQKMLV---QTAIEKVIHTKKDEFGNIMRET 83 Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 N+ V AR + L +E + K H + +EE + L ++ Sbjct: 84 HTNWQYVAARLFVFDLYKEAAIERHYK------HFGYGDFLNLVNSLVEEELYGSYLTDA 137 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 ++ L +K ERD+ F Y G+++L DRY + + E+PQ FM +AM LA+ Sbjct: 138 YTQLEIKELGAYIKPERDYLFNYEGVKLLSDRYLVKGLKKEVFELPQERFMVIAMHLAIP 197 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E EK KR A +FY+LLSS +TPTL N+GT QLSSCF++ V D+L+ I+ Q Sbjct: 198 E-EKAKRMEYAKKFYDLLSSLQMTVATPTLANAGTPFYQLSSCFISVVGDNLWSIYDVNQ 256 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + + ++K+ G LG +R L + I G S GVIP++++ NDTA+AV+Q G+RKG Sbjct: 257 KFSSVSKHGGALGIYVGKIRALNSEIRGNKNASGGVIPWVRLYNDTAIAVDQLGRRKGGA 316 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 L+ WH D+ +FLDL+ N GDDRR+ HD+ TA +P+LFM+R+ + W+LF P V+ Sbjct: 317 TITLDIWHADLYDFLDLKTNNGDDRRKAHDIFTALSVPNLFMERLERREEWSLFDPYLVN 376 Query: 509 -----DLHDLYGKEFEIAYENY-ERQADRGEIKVFRKISAVAL--WRKMLTMLFETGHPW 560 L D Y E+A + +R E K +I+ AL ++++ ETG P+ Sbjct: 377 KVMGFSLEDSYD---EVAENEFTKRYLACEECKELPRITVPALEVMKRIMKSAVETGAPF 433 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------T 597 I F+D N +P +H G+++SSNLC EIT N S E Sbjct: 434 IFFRDTVNQANPNKHAGMIYSSNLCQEITQNMSESELREELIQDESGAKVIITKIKPGDM 493 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNL SI+L + + LA I +R+LDNVI +N + +A+ ++ +RAIG Sbjct: 494 VTCNLNSISL------GRIEKKDLAVNIPLQIRMLDNVITLNQTPVAEARITSDKYRAIG 547 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG G+ L I + + + +E AD+ E I++ AI AS+ELA+E+G Y +F GS W+ Sbjct: 548 LGTSGYHHYLVNHGIGWETQKHLEEADDLFEEIAYQAIKASMELAKEKGKYEAFHGSEWE 607 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G + R + +R W L K V GMRN A+APT + +NI Sbjct: 608 TGEYF---------KRRDYTSDR-----WLALSKEVAEHGMRNGYITAVAPTGSTSNIAN 653 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S IDP ++ +++ G F + +L + W Sbjct: 654 TSAGIDPIFKRYFIEEK-KGSFIPKTA---PDLNTSNFW--------------------- 688 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLM 895 ++ A ID + I + RQ+ IDQ+QS NLY+ P K +D +Y +AW Sbjct: 689 ------LYKEAHTIDQQFSIRACGIRQRHIDQSQSFNLYIT-PEYKAIDILNLYMEAWRK 741 Query: 896 GLKTTYYLRSRS 907 GLKT YY+R++S Sbjct: 742 GLKTIYYVRNQS 753 >gi|225164910|ref|ZP_03727127.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800487|gb|EEG18866.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 382 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 188/382 (49%), Positives = 255/382 (66%), Gaps = 12/382 (3%) Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 CTEITLN+S +ETAVCNLGSI L H + D+ KL TIRTAVR LDNVIDIN + Sbjct: 1 CTEITLNTSKDETAVCNLGSIILETHLHPDGSLDHAKLRDTIRTAVRALDNVIDINFYPT 60 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 A SN HR IGLG+MG +AL+ +ASPEAVE DE+ME I++HA AS +LA Sbjct: 61 RAAGTSNRRHRPIGLGVMGLANALYQRGHAFASPEAVEFNDEAMEAIAYHAYEASSDLAA 120 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG YSS++GS W +G+ P D++ LL + R + + R +L W L+ ++ GMRNSN Sbjct: 121 ERGTYSSYEGSKWHRGILPQDTLDLLEQERGIPVDVPRGGKLDWAPLRAKIAAQGMRNSN 180 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +AIAPTATI+NI S I+P+Y+NL+VKSN+SG+F ++N +LV +LK R+LW + M+ Sbjct: 181 VLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEFVILNPWLVRDLKARNLWTQDMLD 240 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 +LKY DG + +IE IP DL++ + TAF ID W+I +A+RRQKWIDQ+QS+NL+L P Sbjct: 241 NLKYFDGELSDIESIPADLREKYRTAFGIDHQWVIAAAARRQKWIDQSQSVNLWLATPDL 300 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---KGVDGKLNAV--PVTDPNSSTHS 937 K L +YR AW GLKTTYYLR+ A+++EK+T+ K V G + + P ++ Sbjct: 301 KTLSHMYRHAWHAGLKTTYYLRTLGASNIEKATVAVKKEVRGIASGTTPAASSPGVRAYT 360 Query: 938 LGIPSSCTSDT-----ECEVCQ 954 +C+ + ECE CQ Sbjct: 361 AEEKLACSIEAMRNGGECEACQ 382 >gi|251780295|ref|ZP_04823215.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084610|gb|EES50500.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 741 Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 251/764 (32%), Positives = 393/764 (51%), Gaps = 105/764 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM- 248 DG+ +D+ +LI S L + EPN+ + + +L Y K +K + ++ Sbjct: 35 DGMDINDIRKSLIQVSLDLTSDIEPNWQYAASTIYIYEL--------YDKVRKNRNLDIN 86 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDR 304 + LY Y+ +I+E + L E +++ D++ L ++K ERDF F Y G++++ R Sbjct: 87 KNLYDNYY-EFIKELTERNLYGEYILENYSKEDVLELEKEIKPERDFLFNYSGIELVAKR 145 Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFN 360 Y + N IE+PQ FM +AM LA+ E KEKR A FYN+LS +TPT+ N Sbjct: 146 YLVQDFNRKVIELPQQMFMGIAMHLAIPEV-KEKRVYWAKRFYNVLSELKATMATPTMSN 204 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 + QLSSCF+ TV D L GI+ +L A ++K+ GG+G +R LG+ I G G Sbjct: 205 ARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKVSKFGGGMGIYIGKIRSLGSPIRGFKGA 264 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GVIP++K+ NDTA+AV+Q G R G+V +L+ WH D+ EFL +R N GDDR++ HD+ Sbjct: 265 SGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVF 324 Query: 481 TANWIPDLFMKRVTQNA--GWTLFSPDEVSD-----LHDLYGKEFEIAYENYE-RQADRG 532 PDLF K +N W + P E+ + L D YG+E+E Y +E + DR Sbjct: 325 PGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTKGYSLEDFYGEEWEAKY--FECVEDDRI 382 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E R I L R ++ ETG P+ F+D N +P +H G+++SSNLCTEI N Sbjct: 383 EK---RSIKIKDLVRLIIKSAAETGAPFAFFRDSANKMNPNKHNGMIYSSNLCTEIMQNM 439 Query: 593 SSEET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 S+ + VCNL S+ +L + + + D+L + T + Sbjct: 440 SAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLSSL-VLGNI--DVLNDDELEYVVETQI 496 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R +DNVID+N +++ A+ +N +R IGLG G+ L I + + D+ E Sbjct: 497 RAMDNVIDLNYYSVPFAEITNKKYRGIGLGTSGYHHMLANNKIHWTEEKHRIFVDKVYER 556 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I++++I AS+ L++E+G Y F+GS WD G + E+RD + W +L Sbjct: 557 INYYSIKASMNLSKEKGKYELFEGSDWDNGNY--------FELRD------YNDEKWIDL 602 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K+ VK+ GMRN +A+AP + A I G S+ IDP Y++ +++ N Sbjct: 603 KESVKSFGMRNGYLIAVAPNGSTATIAGTSEGIDPIMARFYLEEKKG---SIIPKTAPN- 658 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L + + W + TA+ ++ W +E RQ+ IDQ Sbjct: 659 LSEDNYW---------------------------YYNTAYNLEQGWCVEMNGVRQRHIDQ 691 Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 QS NLY+ + + +++ +Y +A G+K+ YY+RS+S E Sbjct: 692 GQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYYVRSKSLEVTE 735 >gi|188590737|ref|YP_001919719.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum E3 str. Alaska E43] gi|188501018|gb|ACD54154.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum E3 str. Alaska E43] Length = 741 Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 250/764 (32%), Positives = 393/764 (51%), Gaps = 105/764 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM- 248 DG+ +D+ +LI S L + EPN+ + + +L Y K +K + ++ Sbjct: 35 DGMDINDIRKSLIQVSLDLTSDIEPNWQYAASTIYMYEL--------YDKVRKNRNLDIS 86 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDR 304 + LY Y+ +I+E + L E +++ D++ L ++K ERDF F Y G++++ R Sbjct: 87 KNLYDNYY-EFIKELTERNLYGEYILENYSKEDVLELEKEIKPERDFLFNYSGIELVAKR 145 Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFN 360 Y + N IE+PQ FM +AM LA+ E KEKR A FYN+LS +TPT+ N Sbjct: 146 YLVQDFNRKVIELPQQMFMGIAMHLAIPEV-KEKRVYWAKRFYNVLSELKATMATPTMSN 204 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 + QLSSCF+ TV D L GI+ +L A ++K+ GG+G +R LG+ I G G Sbjct: 205 ARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKVSKFGGGMGIYIGKIRSLGSPIRGFKGA 264 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GVIP++K+ NDTA+AV+Q G R G+V +L+ WH D+ EFL +R N GDDR++ HD+ Sbjct: 265 SGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVF 324 Query: 481 TANWIPDLFMKRVTQNA--GWTLFSPDEVSD-----LHDLYGKEFEIAYENYE-RQADRG 532 PDLF K +N W + P E+ + L D YG+E+E Y +E + DR Sbjct: 325 PGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTKGYCLEDFYGEEWEAKY--FECVEDDRI 382 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E R I L R ++ ETG P+ F+D N +P +H G+++SSNLCTEI N Sbjct: 383 EK---RSIKIKDLVRLIIKSAAETGAPFAFFRDSANKMNPNKHNGMIYSSNLCTEIMQNM 439 Query: 593 SSEET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 S+ + VCNL S+ +L + + + ++L + T + Sbjct: 440 SAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLSSL-VLGNI--DVLNDEELEYVVETQI 496 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R +DNVID+N +++ A+ +N +R IGLG G+ L I + + D+ E Sbjct: 497 RAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGYHHMLANNKIHWTEEKHRTFVDKVYER 556 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I++++I AS+ L++E+G Y F+GS WD G + E+RD + W +L Sbjct: 557 INYYSIKASMNLSKEKGKYELFEGSDWDNGNY--------FELRD------YNDEKWIDL 602 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K+ VK+ GMRN +A+AP + A I G S+ IDP Y++ +++ N Sbjct: 603 KESVKSFGMRNGYLIAVAPNGSTATIAGTSEGIDPIMARFYLEEKKG---SIIPKTAPN- 658 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L + + W + TA+ ++ W +E RQ+ IDQ Sbjct: 659 LSEDNYW---------------------------YYNTAYNLEQGWCVEMNGVRQRHIDQ 691 Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 QS NLY+ + + +++ +Y +A G+K+ YY+RS+S E Sbjct: 692 GQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYYVRSKSLEVTE 735 >gi|187933383|ref|YP_001884519.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum B str. Eklund 17B] gi|187721536|gb|ACD22757.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum B str. Eklund 17B] Length = 741 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 250/764 (32%), Positives = 392/764 (51%), Gaps = 105/764 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 DG+ +D+ +LI S L + EPN+ + + +L Y K +K + +++ Sbjct: 35 DGMDINDIRKSLIQVSLDLTSDMEPNWQYSASTVYIYEL--------YDKVRKNRNLDVK 86 Query: 250 -CLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDR 304 LY Y+ +I+E + E +++ D++ L ++K ERDF F Y G+ ++ R Sbjct: 87 KNLYDNYY-EFIKELTEKNFYGEYILENYSKEDILELEKEIKPERDFLFNYSGIDLVTKR 145 Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFN 360 Y + N S IE+PQ FM +AM LA+ E KEKR A FYN+LS +TPT+ N Sbjct: 146 YLVQDFNRSVIELPQQMFMGIAMHLAIPEV-KEKRVYWAKRFYNVLSELKATMATPTMSN 204 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 + QLSSCF+ TV D L GI+ +L A ++K+ GG+G +R LG+ I G G Sbjct: 205 ARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKVSKFGGGMGIYIGKIRSLGSPIRGFKGA 264 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GVIP++K+ NDTA+AV+Q G R G+V +L+ WH D+ EFL +R N GDDR++ HD+ Sbjct: 265 SGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVF 324 Query: 481 TANWIPDLFMKRVTQNA--GWTLFSPDEVSD-----LHDLYGKEFEIAYENYE-RQADRG 532 PDLF K +N W + P E+ + L D YG+E+E Y +E + DR Sbjct: 325 PGVCYPDLFWKLAEENVDNDWYMMCPHEIKNAKGYSLEDFYGEEWETKY--FECVEDDRI 382 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E R I L R ++ ETG P+ F+D N +P +H G+++SSNLCTEI N Sbjct: 383 EK---RSIKIKDLVRLIIKSAAETGAPFAFFRDNANKMNPNKHKGMIYSSNLCTEIMQNM 439 Query: 593 SSEET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 S+ + VCNL S+ +L + + + ++L + T + Sbjct: 440 SAMKVNGDTIIKENDKYNVVQNIEAGDFVVCNLSSL-VLGNI--DVLNDEELECVVETQI 496 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R +DNVID+N +++ A+ +N +R IGLG G+ L I + + D+ E Sbjct: 497 RAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGYHHMLANNKIHWTEEKHRTFVDKVYEK 556 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I++++I AS+ L++E+G Y F+GS WD G + E+RD + W +L Sbjct: 557 INYYSIKASMNLSKEKGKYELFEGSDWDNGNY--------FELRD------YNDEKWIDL 602 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K+ VK+ GMRN +A+AP + A I G S+ IDP Y++ +++ N Sbjct: 603 KQEVKSFGMRNGYLIAVAPNGSTATIAGTSEGIDPIMARFYLEEKKG---SIIPKTAPN- 658 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L + + W + TA+ ++ W +E RQ+ IDQ Sbjct: 659 LSEDNYW---------------------------YYNTAYNLEQGWCVEMNGIRQRHIDQ 691 Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 QS NLY+ + + +++ +Y +A G+K+ YY+RS+S E Sbjct: 692 GQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYYVRSKSLEVTE 735 >gi|150015086|ref|YP_001307340.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium beijerinckii NCIMB 8052] gi|149901551|gb|ABR32384.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 743 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 244/740 (32%), Positives = 374/740 (50%), Gaps = 96/740 (12%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EPN+ V AR +L V ++ + K + + Y E+ E G+ + ++ Sbjct: 60 EPNWQYVAARAYTYELYDRVRSSRNLEDDKNLYQD----YYEFIESLTERGLYGEYILKN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D++ L D+K ERDF F Y G+ +L RY + N S IE+PQ FM +AM LA+ Sbjct: 116 YSREDILELEKDIKPERDFLFNYSGINLLASRYLVQDYNRSPIELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 E E+ + A FY++LSS +TPT+ N+ QLSSCF+ +V D L GI+ +L Sbjct: 176 EKEENRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDSVEDSLEGIYKSLDN 235 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A ++K+ GG+G +R LG+ I G G S GVIP++K+ NDTA+AV+Q G R G+V Sbjct: 236 FAKVSKFGGGMGIYMGKIRALGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVA 295 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN---AGWTLFSPDE 506 +L+ WH D+ EFL +R N GDDR++ HD+ PDLF R+ +N A W + P E Sbjct: 296 IWLDAWHKDIPEFLQIRTNNGDDRKKAHDVFPGICYPDLFW-RLAENDIDANWHMMCPHE 354 Query: 507 VSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 + + L D YG+++E Y YE +D K R +S L R ++ ETG P+ Sbjct: 355 IKNIKGYALEDFYGEQWEEKY--YECVSDERIEK--RVMSVKDLVRLIIKSAVETGAPFA 410 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETA----------- 598 ++D N +P +H G+++SSNLCTEI N S +E A Sbjct: 411 FYRDMTNKMNPNKHNGMIYSSNLCTEIMQNMSPMKIQKSQILSDKDEYAVVEKIIPGDFV 470 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL S+ L N +++ + T +R +DNVID+N +++ A+ +N +RAIGL Sbjct: 471 VCNLSSVVLGNIDVCND---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAIGL 527 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G G+ L I + E D+ E I+++AI AS+ +++E+G Y FKGS WD Sbjct: 528 GTSGYHHMLVNNKIHWTEEEHKSFVDKIYEKINYYAIKASMNISKEKGFYELFKGSDWDT 587 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + + + W+ELK+ V G RN +A+AP + A I G Sbjct: 588 GEY--------------FRLRNYNSAKWNELKELVHEFGTRNGYLIAVAPNGSTATIAGT 633 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--GNIER 836 ++ IDP ++ F + E K GSI Sbjct: 634 TEGIDP----------------IMARFYLEEKK-----------------GSIIPKTAPN 660 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLM 895 + +D + +A+ I+ MW ++ RQ+ IDQ QS NLY+ + +++ +Y +A Sbjct: 661 LSEDNYWYYNSAYNIEQMWCVKMNGIRQRHIDQGQSFNLYITSSYTMRQIMNLYIEACKC 720 Query: 896 GLKTTYYLRSRSATSVEKST 915 G+K+ YY+RS+S E T Sbjct: 721 GVKSIYYVRSKSLEVTECET 740 >gi|281339148|gb|EFB14732.1| hypothetical protein PANDA_021921 [Ailuropoda melanoleuca] Length = 500 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 190/475 (40%), Positives = 287/475 (60%), Gaps = 17/475 (3%) Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L Sbjct: 1 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 60 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P++ + Sbjct: 61 PNECPGLDEVWGEEFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLY 115 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLA 622 KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA Sbjct: 116 KDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLA 175 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + Sbjct: 176 EVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLL 235 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I + A+ AS +LA+E G Y +++GS +G+ D + T Sbjct: 236 NKQIFETIYYGALEASCDLAREHGPYETYEGSPVSRGILQYDMWNVTP----------TD 285 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +V Sbjct: 286 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 345 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ Sbjct: 346 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 405 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 406 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 460 >gi|190574753|ref|YP_001972598.1| ribonucleotide-diphosphate reductase subunit alpha [Stenotrophomonas maltophilia K279a] gi|190012675|emb|CAQ46303.1| putative ribonucleoside-diphosphate reductase 2 alpha chain [Stenotrophomonas maltophilia K279a] Length = 828 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 259/801 (32%), Positives = 389/801 (48%), Gaps = 114/801 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 + F ++RL+ ++ + DVS + + +S DL LI + + ++ Sbjct: 79 LPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLIREAESRVDL 138 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 P + + AR L +L YK+ + +++ Y Y ++E + R ++ Sbjct: 139 VAPEWEQFAARIYLRRL--------YKRASRNRFYDVGLKYGSYVG--LQESLADRGIYS 188 Query: 272 SMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323 + D Y +L+ ERD F Y GL +L RY + E+PQ ++ Sbjct: 189 N--DILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLT 246 Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ TV D L Sbjct: 247 IALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 306 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ + + A ++K+ GG+G VR GA I G S GV+P++K N+TAV+V+Q Sbjct: 307 QGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTAVSVDQ 366 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+RKGAV YL+ WH D+E F+DLR N GD R R HD+ T+ +PDLFM+ V + A W Sbjct: 367 LGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWY 426 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV------------FRKISAVALWRK 548 LF P EV Y ++F Y+ + G ++ R + A+ L+++ Sbjct: 427 LFDPHEVKQAKGWYLQDF------YDEKRGAGSFRLRYAELVADERISRRTVKAIDLFKR 480 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593 ++ ETG+P++ ++D N R+P +H G+++SSNLCTEI N S Sbjct: 481 IMLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIV 540 Query: 594 ----SEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + + VCNL SINL + ++ D L I VR+LDNVID+N + +A Sbjct: 541 TTRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQAT 600 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RAIGLG G+ L I + SP+A E+AD E I+F I AS +LA+E+G+ Sbjct: 601 ITNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEELADRLYERINFLTIQASAQLAKEKGS 660 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F GS W G + D RD S WD L + V T G+RN +A+A Sbjct: 661 YPMFAGSDWHNGRYFRD--------RD------YSGAAWDSLAREVATHGLRNGWLLAVA 706 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + A I G + SIDP Y Y + V L E W Y Sbjct: 707 PNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLE-----TWP-------YYE 754 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKK 884 G A+++D + +RRQ+ +DQ+ S NLY+ PS Sbjct: 755 KG------------------AYKVDQFASVRQNARRQRHVDQSISFNLYV--PSTIRAST 794 Query: 885 LDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 795 LLELHLSAWREGLKTTYYVRS 815 >gi|294501622|ref|YP_003565322.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus megaterium QM B1551] gi|294351559|gb|ADE71888.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus megaterium QM B1551] Length = 747 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 245/770 (31%), Positives = 389/770 (50%), Gaps = 98/770 (12%) Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV- 236 K++ + T K + +++ + LI ++ I +EP++ V A L +L R+ Sbjct: 35 KVIQTVTVK---ENMTDEKVANVLILAALERISMEEPDWTYVAADVYLNELYRKAADNRG 91 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 Y K +K + + + + G+ + L ++ + ++ +A+ + ERD F Y+ Sbjct: 92 YDKKEKYGS------FYQLIQKLTKIGIYNKQLLKTYTEEEINEIASVIIPERDRLFTYI 145 Query: 297 GLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMC 353 GL L DRY + R+ E+PQ F+ +AM L +E ++ + A+ E Y LSS + Sbjct: 146 GLLTLADRYLATSHDKRVYELPQERFLIIAMTLMSQEKKENRTALVKEAYWALSSLYMTV 205 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +TPTL N+G + QLSSCF+ T+ D L GI+ + + A L+K GG+G +R G+ Sbjct: 206 ATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDSNTDLATLSKNGGGIGVYLGHIRSRGSD 265 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G G S G IP++K N+TAV+V+Q G+R+GA+ YL+ WH D+ FLD R N GD+R Sbjct: 266 IKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFSFLDARLNNGDER 325 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FEIAYE 523 +RTHD+ T +PDLFM++V W LF P EV L D Y +E F Y Sbjct: 326 QRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHEVRTLMGYSLEDFYDEEEGSGSFRTRYA 385 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + A+ ++++++ ETG P++ ++D N + +H G+++ SN Sbjct: 386 ----ECVNNEQLSRETVPAIEIFKRIMLSQLETGTPYMFYRDTVNRANQNRHEGIIYCSN 441 Query: 584 LCTEITLNSS----SEET---------------AVCNLGSINLLAHFANNQFDYDKLAST 624 LCTEIT N S +EE VCNL SINL D L Sbjct: 442 LCTEITQNQSTTVVTEEITEDGKIIITKNPGDFVVCNLSSINLARAVTE-----DVLERL 496 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I VR+LDNVI++N + +AK +N +RA+GLG G+ L L I + + EAV D Sbjct: 497 IPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGLGTFGWNHLLALKKIAWETDEAVAYCD 556 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E E I++ + AS+ LA+E+GAY FKGS ++ G + + + Sbjct: 557 ELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFESGAY--------------FETRKYTSE 602 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W EL+ V++ G+RN MA+AP ++ + I G + SIDP ++ Y + + V Sbjct: 603 AWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGSTASIDPIFRKFYSEEKKNYKIPVT-- 660 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L W + + + ID W I+ ++RQ Sbjct: 661 --APDLSPATNW---------------------------YYKSVYLIDQHWSIKQNAKRQ 691 Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 + IDQ+ S NLY+ ++ K+L ++ AW LKTTYY+RS S+ +E+ Sbjct: 692 RHIDQSISFNLYVQNDIRAKELLDLHMTAWKEKLKTTYYVRSTSSEVIEE 741 >gi|288554978|ref|YP_003426913.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pseudofirmus OF4] gi|288546138|gb|ADC50021.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pseudofirmus OF4] Length = 723 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 251/729 (34%), Positives = 369/729 (50%), Gaps = 93/729 (12%) Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 +EP++ V A + LR ++ +P+ + +PE+ IE+G+ L Sbjct: 44 EEPHWTYVAAACYINHLREQIAEQRGVEPKV-----LSASFPEFLKAQIEKGIYDGRLDS 98 Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330 D +L LA L+ RD F Y+G++ L DRY N +E+PQ +M +AM L Sbjct: 99 YSTD-ELYELALTLEPARDQKFTYIGIKTLADRYLAKDFNDQIVELPQERWMVIAMTLMS 157 Query: 331 KETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +E + + E Y LS + +TPT+ N+G QLSSCF+ TV DDL IF + Sbjct: 158 EENRGSRLELVKEAYWALSHLYMTVATPTMSNAGKVGGQLSSCFIDTVEDDLRSIFDSCT 217 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A ++K GGLG +R G+ I G S GVIP++K N+ AV+V+Q G+R+GA+ Sbjct: 218 DAATVSKNGGGLGMYLGKIRARGSSIRGFKNVSSGVIPWMKQLNNVAVSVDQLGQRQGAI 277 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL+ WH D+ FLD + N GD+R+RTHD+ TA +PDLFM+ V + W LF P EV Sbjct: 278 AVYLDVWHKDIFAFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVEKRDTWYLFDPHEVR 337 Query: 509 -----DLHDLYGK-----EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 L D Y + EF + YE+ A E+ +I A+ + ++++ ETG Sbjct: 338 VKMGFSLEDFYDEKKGDGEFR---KRYEQCAANDELSR-TEIPAIEVMKRIMLSQLETGS 393 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EET---------------AV 599 P++ ++D N +P +H G+++ SNLCTEI N S+ EET V Sbjct: 394 PFMFYRDTANRLNPNKHKGMIYGSNLCTEIMQNMSATTVVEETLEDDTISIKKQPGDYVV 453 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL S++L F++ D + ++ VR+LDNVID N +++A+K+N +RAIGLG Sbjct: 454 CNLSSLSLAQVFSD-----DVVERVVKIQVRMLDNVIDQNSIGVKQAEKTNKMYRAIGLG 508 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G+ L I + S E+V + E I+ AI AS ELA E+GAY ++GS W G Sbjct: 509 TYGWHHHLAKRGIAWESEESVWEVERVYERINQAAIKASAELAAEKGAYPHYEGSDWQTG 568 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 F +E E A WDE++ + GMRN MA+AP AT + I G + Sbjct: 569 EF-------FSERGYEGA-------EWDEIRSVISKHGMRNGYVMAVAPNATTSLIAGST 614 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SIDP +Q YV+ + VV +L R W Sbjct: 615 ASIDPLFQKYYVEEKKNYRIPVV----APDLDARTTW----------------------- 647 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 + A +D W I + RQ+ +DQ S NLY+ + K+L ++ AW GLK Sbjct: 648 ----YYKPAHLVDQTWSIRQNAARQRHVDQGISFNLYVPNNVKAKELLDLHLLAWKEGLK 703 Query: 899 TTYYLRSRS 907 TTYY+RS S Sbjct: 704 TTYYVRSTS 712 >gi|295706970|ref|YP_003600045.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus megaterium DSM 319] gi|294804629|gb|ADF41695.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus megaterium DSM 319] Length = 747 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 246/773 (31%), Positives = 392/773 (50%), Gaps = 104/773 (13%) Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVY 237 K++ + T K + +++ + LI ++ I +EP++ V A L +L Y Sbjct: 35 KVIQTVTVK---ENMTDEKVANVLILAALERISMEEPDWTYVAADVYLNEL--------Y 83 Query: 238 KKPQKATHHEMQCLYPEYFCRYIEE----GVKARLLHESMMDFDLVYLANDLKYERDFAF 293 +K ++ + Y ++ + I+E G+ + L ++ + ++ +A+ + ERD F Sbjct: 84 RKAGDNRGYDKKEKYGSFY-QLIQELTKIGIYNKQLLKTYTEEEINEIASVIIPERDRLF 142 Query: 294 EYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFH 350 Y+GL L DRY + R+ E+PQ F+ +AM L +E ++ + A+ E Y LSS + Sbjct: 143 TYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTLMSQEKKESRTALVKEAYWALSSLY 202 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPTL N+G + QLSSCF+ T+ D L GI+ + + A L+K GG+G +R Sbjct: 203 MTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDSNTDLATLSKNGGGIGVYLGHIRSR 262 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G+ I G G S G IP++K N+TAV+V+Q G+R+GA+ YL+ WH D+ FLD R N G Sbjct: 263 GSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFSFLDARLNNG 322 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FEI 520 D+R+RTHD+ T +PDLFM++V W LF P EV L D Y +E F Sbjct: 323 DERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHEVRTLMGYSLEDFYDEEEGSGSFRT 382 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 Y + E + A+ ++++++ ETG P++ ++D N + +H G+++ Sbjct: 383 RYA----ECVNNEQLSRETVPAIEIFKRIMLSQLETGTPYMFYRDTVNRANQNRHEGMIY 438 Query: 581 SSNLCTEITLNSS----SEET---------------AVCNLGSINLLAHFANNQFDYDKL 621 SNLCTEIT N S +EE VCNL SINL D L Sbjct: 439 CSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFVVCNLSSINLARAVTE-----DVL 493 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 I VR+LDNVI++N + +AK +N +RA+GLG G+ L L I + + EAV Sbjct: 494 ERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGLGTFGWNHLLALKKIAWETDEAVA 553 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 DE E I++ + AS+ LA+E+GAY FKGS ++ G + + Sbjct: 554 YCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFESGAY--------------FETRKY 599 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + W EL+ V++ G+RN MA+AP ++ + I G + SIDP ++ Y + + V Sbjct: 600 TSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGSTASIDPIFRKFYSEEKKNYKIPV 659 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L W + + + ID W I+ + Sbjct: 660 T----APDLSPATNW---------------------------YYKSVYLIDQHWSIKQNA 688 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 +RQ+ IDQ+ S NLY+ ++ K+L ++ AW LKTTYY+RS S+ +E+ Sbjct: 689 KRQRHIDQSISFNLYVQNDIRAKELLDLHMAAWKEKLKTTYYVRSTSSEVIEE 741 >gi|254524235|ref|ZP_05136290.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] gi|219721826|gb|EED40351.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] Length = 787 Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 256/802 (31%), Positives = 389/802 (48%), Gaps = 116/802 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 + F+++RL+ ++ + DVS + + LS DL LI + + ++ Sbjct: 38 LPFDAERLQRSIDTVHAEFPQLDVSDYRRVVQAMVERKPSLSADDLVDLLIREAESRVDL 97 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 P + + AR L +L YK+ + +++ Y Y ++E + R ++ Sbjct: 98 VAPEWEQFAARIYLRRL--------YKRASRNRFYDVSLKYGSYVG--LQESLADRGIYS 147 Query: 272 SMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323 + D Y +L+ ERD F Y GL +L RY + E+PQ ++ Sbjct: 148 N--DILRCYSKEELQQAGEMIEPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLT 205 Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ TV D L Sbjct: 206 IALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 265 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ + + A ++K+ GG+G VR GA I G S GV+P++K N+TAV+V+Q Sbjct: 266 QGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVPNSSGGVVPWIKQLNNTAVSVDQ 325 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+RKGAV YL+ WH D+E FLDLR N GD R R HD+ T+ +PDLFM+ V + A W Sbjct: 326 LGQRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWY 385 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKISAVALWRK 548 LF P EV Y ++F Y+ + G + R + A+ L+++ Sbjct: 386 LFDPHEVKSAKGWYLQDF------YDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKR 439 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593 ++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 440 IMLSQLETGNPFLFYRDEVNRKNPNKHAGMVYSSNLCTEILQNMSPTRMIQEIVSGDQIV 499 Query: 594 ----SEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + + VCNL SINL + ++ D L I VR+LDNVID+N + +A Sbjct: 500 TTRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQAT 559 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RAIGLG G+ L I + SP+A ++AD E I+F I AS +LA+E+G+ Sbjct: 560 ITNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEQLADRLYERINFLTIQASAQLAKEKGS 619 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F GS W G + D S WD L + V T G+RN +A+A Sbjct: 620 YPMFAGSDWHNGRYFSD--------------RGYSGADWDSLAREVATHGLRNGWLLAVA 665 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + A I G + SIDP Y Y + D + Sbjct: 666 PNMSTAQIAGSTASIDPIYSAFYYEEK---------------------------KDFRRP 698 Query: 828 DGSIG-NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GK 883 + G ++E P A+++D + +RRQ+ +DQ+ S NLY+ PS Sbjct: 699 VAAPGLSLETWP----YYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYV--PSTIRAS 752 Query: 884 KLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 753 TLLELHLSAWREGLKTTYYVRS 774 >gi|299822181|ref|ZP_07054067.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi DSM 20601] gi|299815710|gb|EFI82948.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi DSM 20601] Length = 758 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 258/735 (35%), Positives = 369/735 (50%), Gaps = 108/735 (14%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270 P + AR L KL YKK K + Y Y E G+ + + Sbjct: 76 PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYIGLQESLGERGIYSGNIL 127 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 ++ +L+ + E+D F Y GL +L RY L + R E+PQ ++ +A+ L Sbjct: 128 KNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 186 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 E KEKR E Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ Sbjct: 187 MQNEG-KEKRMELVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 245 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 246 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 305 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P Sbjct: 306 GAISVYLDVFHKDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDVFMEAVERRGEWYLFDPH 365 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553 EV D Y ++F Y+ + G + + +KI A+ + ++++ Sbjct: 366 EVHDKKGWYLQDF------YDEKKGEGTFREKYDELVADETISKKIVKAIDIAKRIMLSQ 419 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------- 597 ETG+P++ ++D N +P +H G ++SSNLCTEI N S+ Sbjct: 420 LETGNPFMFYRDEVNRMNPNKHEGRIYSSNLCTEIMQNMSATRVIHEIISGDQIVITKKA 479 Query: 598 ---AVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNL SINL A A ++ L+ I VR+LDNVID+N + +A +N + Sbjct: 480 GDFVVCNLSSINLGRAVLAEDE---STLSRLIDVEVRMLDNVIDLNELPVPQATITNKKY 536 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 537 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEKINYLAIQASNKLAQEKGAYKVFKG 596 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + E RD S W EL +V GMRN+ MA+AP + A Sbjct: 597 SDWETGEY--------FERRD------YSTEAWKELADKVAASGMRNAYLMAVAPNMSTA 642 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + +++D + DL + Sbjct: 643 QIAGSTASIDPIYNAFYYE------------------EKKDYRRPVIAPDL--------S 676 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYR 890 + P A+++D + +RRQ+ +DQ+ S NLY+ PSG KL ++ Sbjct: 677 LNTYP----YYEKGAYKVDQFASVRQNARRQRHVDQSLSFNLYV--PSGIKASKLLELHM 730 Query: 891 QAWLMGLKTTYYLRS 905 AW GLKTTYY+RS Sbjct: 731 TAWREGLKTTYYVRS 745 >gi|210631891|ref|ZP_03297103.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279] gi|210159816|gb|EEA90787.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279] Length = 919 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 289/963 (30%), Positives = 439/963 (45%), Gaps = 145/963 (15%) Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-------------- 69 E+ + KR+G ++P KI A+ +AF V G + Q Sbjct: 12 ERTAAGVIRKRDGRTEPYEPGKIIEAMRRAFADVYGDAGWQRSGTQAAANDQRPDAPAGP 71 Query: 70 --DIIKNLTEQTVTRLLQHNKSAL---------------IVHIEDIQDQVECSLMQSGHH 112 + + +E R + L I +EDIQD VE +LM+ GH Sbjct: 72 DGQLSRERSEAHTERPAADQEDELLALLAMVERSMSTSAIQSVEDIQDLVERALMERGHF 131 Query: 113 KITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172 ++ + Y+LYR R++ RAA+ SD + ++ R++ E Sbjct: 132 EVAKNYILYRHHRAEKRAARLELASDVAVDGVDDVL-----------ARIQRDFPEEAYD 180 Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRRE 231 L +S++ T+ +G E ALI ++ L +E P + + AR R+ Sbjct: 181 LAVLSARF---RTFTG--EGQDEPARLEALIRAAIELTSQEAPRWEFIAARLRDFAFARD 235 Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYI----EEGVKARLLHESMMDFDLVYLANDLKY 287 + L E F + I ++G+ + + +L A + Sbjct: 236 LAAA------------RSALGIETFSQLIHHLTDQGLYGAYILAAYSGAELDQAATYMDP 283 Query: 288 ERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYN 344 RD F Y GL +L RY +H + + +E PQ F+ +A+ LA+ E ++ A FY+ Sbjct: 284 SRDELFTYSGLDLLIRRYVIHGHDHTPLESPQEMFLGIALHLAMNEPPAQRLAWVRRFYD 343 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +LS +TPT+ N+ QLSSCF+ TVPD L GI+ ++ A ++KY GG+G Sbjct: 344 MLSRLEVTMATPTMSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYL 403 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR G I G G + GVI +++V NDTAVAV+Q G R+GAV YL+ WH D+ EFL+ Sbjct: 404 GKVRATGGSIRGFEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLN 463 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLFSPDEV-----SDLHDLYGKE 517 LR N GDDR + HD+ A PDLF M + + W L P ++ L D YG+E Sbjct: 464 LRTNNGDDRMKAHDVFPAVCYPDLFWRMAEESLDQQWHLMCPHDILTIKGYALEDSYGEE 523 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +E Y R R I L R +L ETG P+ +D N +P H G Sbjct: 524 WERRY----RDCVADPRIPTRTILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNSHEG 579 Query: 578 VVHSSNLCTEITLNSSSEET-----------------------AVCNLGSINLLAHFANN 614 V++ SNLCTEI N+S+ + VCNL S++L Sbjct: 580 VIYCSNLCTEIAQNTSAIQEVTREVRTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE- 638 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D + I TAVR LDNVID+N + + A+ +NH +R+IGLG+ G+ L + + Sbjct: 639 --DDAAMGRVIETAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGVSW 696 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIG 727 S E + + DE E I++HAI AS LA+ERGA F+GS W G + P+ G Sbjct: 697 ESEEHLRLVDEVFERINYHAICASERLAEERGANGVFEGSEWQSGAYFAKRGYCPLPCDG 756 Query: 728 LLAEVRDELAMNRTS--RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 E + + W EL RV G+RN+ +A+APT++ + + G + IDP Sbjct: 757 SEPEAASAVVTREGAIGSKRWGELAARVAEHGVRNAYLLAVAPTSSTSILSGTTPGIDPI 816 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + +++ V EL + W + Sbjct: 817 MRKFFLEEKKGAMLPRV----APELSPQTYW---------------------------YY 845 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A I+ W I +A RQ+ IDQAQS+NLY+ ++ + +++ +Y AW G+KT YY+R Sbjct: 846 KPAHYINQHWSIRAAGMRQRHIDQAQSMNLYITNDYTLRQVLDLYIGAWRQGVKTVYYVR 905 Query: 905 SRS 907 S+S Sbjct: 906 SKS 908 >gi|194366072|ref|YP_002028682.1| ribonucleotide-diphosphate reductase subunit alpha [Stenotrophomonas maltophilia R551-3] gi|194348876|gb|ACF51999.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas maltophilia R551-3] Length = 787 Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 256/802 (31%), Positives = 390/802 (48%), Gaps = 116/802 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 + F ++RL+ ++ + DVS + + +S DL LI + + ++ Sbjct: 38 LPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLIREAESRVDL 97 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 P + + AR L +L YK+ + +++ Y Y ++E + R ++ Sbjct: 98 VAPEWEQFAARIYLRRL--------YKRASRNRFYDVGLKYGSYVG--LQESLADRGIYS 147 Query: 272 SMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323 + D Y +L+ ERD F Y GL +L RY + E+PQ ++ Sbjct: 148 N--DILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLT 205 Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ TV D L Sbjct: 206 IALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 265 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ + + A ++K+ GG+G VR GA I G S GV+P++K N+TAV+V+Q Sbjct: 266 QGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTAVSVDQ 325 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+RKGAV YL+ WH D+E F+DLR N GD R R HD+ T+ +PDLFM+ V + A W Sbjct: 326 LGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWY 385 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKISAVALWRK 548 LF P EV Y ++F Y+ + G + R + A+ L+++ Sbjct: 386 LFDPHEVKQAKGWYLQDF------YDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKR 439 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593 ++ ETG+P++ ++D N R+P +H G+++SSNLCTEI N S Sbjct: 440 IMLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIV 499 Query: 594 ----SEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + + VCNL SINL + ++ D L I VR+LDNVID+N + +A Sbjct: 500 TTRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQAT 559 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +NH +RAIGLG G+ L I + S +A ++AD E I+F I AS +LA+E+G+ Sbjct: 560 ITNHKYRAIGLGTFGWHHLLAQQSIQWESQDAEQLADRLYERINFLTIQASAQLAKEKGS 619 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F GS W G + D RD S WD L + V T G+RN +A+A Sbjct: 620 YPMFAGSDWHNGRYFSD--------RD------YSGAAWDSLAREVATHGLRNGWLLAVA 665 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + A I G + SIDP Y Y + D + Sbjct: 666 PNMSTAQIAGSTASIDPIYSAFYYEEK---------------------------KDFRRP 698 Query: 828 DGSIG-NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GK 883 + G ++E P A+++D + +RRQ+ +DQ+ S NLY+ PS Sbjct: 699 VAAPGLSLETWP----YYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYV--PSTIRAS 752 Query: 884 KLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 753 TLLELHLSAWREGLKTTYYVRS 774 >gi|331083186|ref|ZP_08332302.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 6_1_63FAA] gi|330404575|gb|EGG84115.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 6_1_63FAA] Length = 733 Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 248/755 (32%), Positives = 388/755 (51%), Gaps = 102/755 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + ++E D+ AL ++ L E EP + + ARFL K + + T + K+ ++ + ++Q Sbjct: 32 ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 L +EG+ + E+ + +++ + +K ER+ F Y GL +L +RY + Sbjct: 92 YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143 Query: 310 NGS-RIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 + ++E PQ +M +A+ LA+KE +K K +FY++LS +TPTL N+ + Q Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ VPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI + Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +++ NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ A PD Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323 Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 LF K ++ W L P E+ L D YG+E+E Y RQ E R I Sbjct: 324 LFWKMAKEDLEQKWYLMCPHEIFMVKGWRLEDCYGEEWEEKY----RQCIEDERIKKRSI 379 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597 + + R +L ETG P+ +D N +P H G+++ SNLCTEI N E+ Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439 Query: 598 --------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 VCNL S++L H + Y + + TAVR LDNVID Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSL-GHLSVEDKKY--MKDIVGTAVRALDNVID 496 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N + + A+ +N +R IGLG+ G+ L +I + S E ++ ADE E I++ + A Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S +LA+E+G Y F+GS W G + E R+ ++ W EL+ +V+ G Sbjct: 557 SADLAEEKGTYQFFEGSDWHTGAY--------FEKRNYVSKE------WKELEYKVRNTG 602 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN +A APT++ + + G + +DP V+ F + E K Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDP----------------VMKKFFMEEKK------ 640 Query: 818 EAMISDLKYHDGSIGNIERIPDDLK----KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 GS+ + R+ DL + A ID + +++ RQ+ IDQAQSL Sbjct: 641 -----------GSM--LPRVAPDLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSL 687 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 NLY+ + + ++L +Y +AW G+KT YY+RS+S Sbjct: 688 NLYITNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722 >gi|260589756|ref|ZP_05855669.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia hansenii DSM 20583] gi|260539996|gb|EEX20565.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia hansenii DSM 20583] Length = 733 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 248/755 (32%), Positives = 388/755 (51%), Gaps = 102/755 (13%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + ++E D+ AL ++ L E EP + + ARFL K + + T + K+ ++ + ++Q Sbjct: 32 ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 L +EG+ + E+ + +++ + +K ER+ F Y GL +L +RY + Sbjct: 92 YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143 Query: 310 NGS-RIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 + ++E PQ +M +A+ LA+KE +K K +FY++LS +TPTL N+ + Q Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ VPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI + Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +++ NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ A PD Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323 Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 LF K ++ W L P E+ L D YG+E+E Y RQ E R I Sbjct: 324 LFWKMAKEDLEQKWHLMCPHEIFMVKGWRLEDCYGEEWEEKY----RQCIEDERIKKRSI 379 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597 + + R +L ETG P+ +D N +P H G+++ SNLCTEI N E+ Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439 Query: 598 --------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 VCNL S++L H + Y + + TAVR LDNVID Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSL-GHLSVEDKKY--MKDIVGTAVRALDNVID 496 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N + + A+ +N +R IGLG+ G+ L +I + S E ++ ADE E I++ + A Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S +LA+E+G Y F+GS W G + E R+ ++ W EL+ +V+ G Sbjct: 557 SADLAEEKGTYQFFEGSDWHTGAY--------FEKRNYVSKE------WKELEYKVRNTG 602 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN +A APT++ + + G + +DP V+ F + E K Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDP----------------VMKKFFMEEKK------ 640 Query: 818 EAMISDLKYHDGSIGNIERIPDDLK----KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 GS+ + R+ DL + A ID + +++ RQ+ IDQAQSL Sbjct: 641 -----------GSM--LPRVAPDLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSL 687 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 NLY+ + + ++L +Y +AW G+KT YY+RS+S Sbjct: 688 NLYITNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722 >gi|15896522|ref|NP_349871.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium acetobutylicum ATCC 824] gi|15026353|gb|AAK81211.1|AE007823_5 Ribonucleotide reductase alpha subunit [Clostridium acetobutylicum ATCC 824] gi|325510680|gb|ADZ22316.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium acetobutylicum EA 2018] Length = 743 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 241/792 (30%), Positives = 403/792 (50%), Gaps = 105/792 (13%) Query: 162 LEMIVEEACSGLQD---VSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEK-EPNY 216 +E + +EA G+ D + +K L K++ +G+ E ++ ++I L + EP + Sbjct: 4 VENLCKEALKGINDDENIYTKTKLINVLKHITREGMKEEEIIKSVIQVCLELTKADEPKW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHE--MQCLYPEYFCRYIEEGVKARLLHESMM 274 + +R + L EV +K + + +E + Y ++ + +EG+ + + E+ Sbjct: 64 LQGASRLYVINLYNEV-----RKNRNISENEDPYKGFY-DFIVKLTDEGLYGKYILENYS 117 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKE 332 D+ L + +K +RDF F Y G+++L +RY + N R +E+PQ FM +AM LA+ E Sbjct: 118 KEDIYELESFIKKDRDFLFTYSGIKLLSERYLIQ-NFERKVLELPQQMFMGIAMHLAVPE 176 Query: 333 TEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 ++ + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 177 KQENRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDTVDDSLKGIYKSLDNF 236 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A ++KY GG+G + VR +GA I G G S GV+P++K+ NDTA+AV+Q G R G+V Sbjct: 237 ANVSKYGGGMGVYFGKVRSMGASIRGFKGASGGVVPWVKLFNDTAIAVDQLGVRNGSVAV 296 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVS 508 +L+ WH D+ EF+ LR N GDDR++ HD+ PDLF + + +A W + P E+ Sbjct: 297 WLDAWHKDLPEFMQLRTNNGDDRKKAHDVFPGVCYPDLFWRLAEEDIDANWYMMCPHEIK 356 Query: 509 -----DLHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 L D YG+E+E Y + + + D+ R +S + R ++ ETG P+ Sbjct: 357 LVKGYSLEDYYGEEWEKRYFDCVNDPRIDK------RMMSVKDIVRLIIKSAAETGTPFA 410 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETA 598 ++D N +P +H G+++SSNLCTEI N S S + Sbjct: 411 FYRDAANRMNPNKHKGMIYSSNLCTEIMQNMSAMDILEDEIIDENGDKIIVQKAKSGDFV 470 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL SI +L + N D ++L I T +R +DNVID+N +++ A+ +N +R IGL Sbjct: 471 VCNLSSI-VLGNVDVN--DDEELQYVIETQIRAMDNVIDLNYYSVPFAEVTNKRYRGIGL 527 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G G+ L + + S + E D E I+++AI AS+ +A+++G Y F+GS W+ Sbjct: 528 GTSGYHHMLTNNRVVWTSDDHFEFTDRVYEKINYYAIQASMNIAKDKGRYEYFEGSDWEN 587 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + + + W L ++K GMRN MA+AP + A I G Sbjct: 588 GSY--------------FKLRGYNSPKWKALIAKIKKYGMRNGYIMAVAPNGSTATIAGT 633 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S+ +DP +++ + + L + + W Sbjct: 634 SEGVDPVMARFWMEEKKGS----ITPKIAPNLSRENFW---------------------- 667 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 + +A+ ID ++ RQ+ IDQ+QS NLY+ + + +++ +Y +A+ G+ Sbjct: 668 -----FYNSAYNIDQKLCVKINGIRQRHIDQSQSFNLYITTDYTMRQIMNLYIEAYKSGV 722 Query: 898 KTTYYLRSRSAT 909 K+ YY+RS+S T Sbjct: 723 KSIYYVRSKSLT 734 >gi|308067266|ref|YP_003868871.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide reductase) [Paenibacillus polymyxa E681] gi|305856545|gb|ADM68333.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Paenibacillus polymyxa E681] Length = 777 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 258/808 (31%), Positives = 402/808 (49%), Gaps = 105/808 (12%) Query: 155 ISFNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 ++F+ R+ + + SGL + +++ T K D ++ D+ A ++ L+ KE Sbjct: 13 LAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDDISNAFAMAALELVSKE 72 Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY---IEEGVKARLL 269 P++ AR LL T++YKK ATH + E + + I + V+ + Sbjct: 73 EPDWKFAAARALL--------TSLYKKA--ATHRRYKSYADEPYGAFYPLITDLVQRGIY 122 Query: 270 HESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 + ++D+ + L + + + D F+Y+GL L +RY + +G +E+PQ +M + Sbjct: 123 RQELLDYYTKEQIDELGDSILPKNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMII 182 Query: 325 AMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381 AM L +E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 183 AMYLMHQEPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLE 242 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 243 GIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQL 302 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+RV W L Sbjct: 303 GTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWNL 362 Query: 502 FSPDEVSD-------------LHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALW 546 F P EV L D Y + F E YE +A + I + A+ + Sbjct: 363 FCPHEVKKVMGWKDDNGRPLGLEDFYDETFGSGTFREKYE-EASQHPILSRITVPAIDIM 421 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595 ++++ ETG P++ ++D N +P + G+V+SSNLCTEI N S+ Sbjct: 422 KRLMKSQLETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEELVTKD 481 Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + VCNL SI+L D + VR+LDNVIDIN + Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDINNIEV 536 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A+ +N +RA+GLG G L L I + S EAV D E I++ A+ +S+ELA+ Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSMELAK 596 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G Y+ F+GS W G + S G R+ + + W EL + VK G+RN+ Sbjct: 597 EKGRYAKFEGSDWSTGHY-FTSRGYTDGTREGKFVTTSE---WSELSEEVKQNGVRNAWL 652 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAP + + I G + SIDP Y+ L + + + + N +L ++ +W Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKTT--YKIANP--APDLNEKTIW------- 701 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 + TAF +D I AS RQ+ IDQ QS NLY+ P K Sbjct: 702 --------------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYV-RPDIK 740 Query: 884 KLDF--IYRQAWLMGLKTTYYLRSRSAT 909 +F ++ AW G+K+TYY+RSR+ T Sbjct: 741 ATEFLELHIHAWKSGMKSTYYVRSRALT 768 >gi|302386032|ref|YP_003821854.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium saccharolyticum WM1] gi|302196660|gb|ADL04231.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium saccharolyticum WM1] Length = 752 Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 248/752 (32%), Positives = 375/752 (49%), Gaps = 116/752 (15%) Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCL 251 ALI ++ L +E P++ + AR L+ E+L R + + + K Sbjct: 61 ALIQAAVELTTQEAPDWEYIGARLLMVRFNIRLKEELGRRKIGSFFDK------------ 108 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HI 309 C EEG+ + E+ ++ + R+ F Y GL++L +RY + H Sbjct: 109 ----ICFLTEEGLYGDYILENYNKEEIQRFEGYMDQTRNHLFNYSGLELLLNRYVIRSHQ 164 Query: 310 NGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N +E PQ F+ +AM LA+ ET ++E FY++LS+ +TPTL N+ + QL Sbjct: 165 NAP-LETPQEMFLGIAMHLAMNETVDREAWVKRFYHMLSTLKVTMATPTLSNARKPYHQL 223 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF+ TVPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GV+ ++ Sbjct: 224 SSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVVRWI 283 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ANDTAVAV+Q G R+GAV YL+ WH D+ EFL L+ N GDDR + HD+ P+L Sbjct: 284 KLANDTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLTLKTNNGDDRMKAHDVFPGVCYPNL 343 Query: 489 FMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQAD-RGEIKVFRKI 540 F K+ +N W L P E+ L D YG ++E ER D + ++ ++I Sbjct: 344 FWKQAKENIEGDWYLMCPHEILTVKGWALEDFYGIQWE------ERYLDCVSDSRIHKRI 397 Query: 541 SAVA-LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597 + + R +L ETG P+ +D N +P H G+++ SNLCTEI N S+ E Sbjct: 398 IPIKDIIRLVLKSAVETGTPFTFNRDIVNEANPNSHCGMIYCSNLCTEIAQNMSTVEQLE 457 Query: 598 ---------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 VCNL S++L + D +LA R+AVR LDNVI Sbjct: 458 QQIRWVDGETVVVTVTKPGDFVVCNLASLSL---GKIDLTDTQELAELTRSAVRALDNVI 514 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N I AK +N +R +GLG+ G+ L I + S E +E +D E I++ AI Sbjct: 515 DLNFFPIPYAKVTNLRYRPVGLGVSGYHHMLAKNGISWESQEHLEFSDRVFEAINYAAIQ 574 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS + A+E+G Y F+GS W G + D G +E W L+++V Sbjct: 575 ASCDFAREKGRYDLFEGSQWQTGAY-FDKRGYCSE-------------KWKSLREKVAAY 620 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GMRN +AIAPT++ + I G + +DP Y++ SG V +L W Sbjct: 621 GMRNGWLLAIAPTSSTSMIAGTTAGLDPVLNRYYLEEKKSGLVPRV----APDLSPETFW 676 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 KY + A ID W + +A RQ+ +DQAQS+NLY Sbjct: 677 --------KYKN-------------------AHYIDQKWSVRAAGVRQRHVDQAQSMNLY 709 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + ++ + +++ +Y AW G+KT YY+RSRS Sbjct: 710 ITNDYTLRQVLGLYILAWECGVKTIYYIRSRS 741 >gi|16804194|ref|NP_465679.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes EGD-e] gi|46908388|ref|YP_014777.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes serotype 4b str. F2365] gi|47091824|ref|ZP_00229619.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|47095729|ref|ZP_00233335.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|224500180|ref|ZP_03668529.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes Finland 1988] gi|224501046|ref|ZP_03669353.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes FSL R2-561] gi|226224762|ref|YP_002758869.1| ribonucleoside-diphosphate reductase, subunit alpha [Listeria monocytogenes Clip81459] gi|254825282|ref|ZP_05230283.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J1-194] gi|254826955|ref|ZP_05231642.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL N3-165] gi|254831408|ref|ZP_05236063.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 10403S] gi|254853281|ref|ZP_05242629.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL R2-503] gi|254899144|ref|ZP_05259068.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes J0161] gi|254912715|ref|ZP_05262727.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes J2818] gi|254931733|ref|ZP_05265092.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes HPB2262] gi|254937042|ref|ZP_05268739.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes F6900] gi|255519997|ref|ZP_05387234.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes FSL J1-175] gi|284802602|ref|YP_003414467.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5578] gi|284995744|ref|YP_003417512.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5923] gi|300764037|ref|ZP_07074033.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes FSL N1-017] gi|16411625|emb|CAD00233.1| lmo2155 [Listeria monocytogenes EGD-e] gi|46881659|gb|AAT04954.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47015872|gb|EAL06799.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|47019835|gb|EAL10573.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|225877224|emb|CAS05938.1| Putative ribonucleoside-diphosphate reductase, subunit alpha [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599336|gb|EEW12661.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL N3-165] gi|258606641|gb|EEW19249.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL R2-503] gi|258609645|gb|EEW22253.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes F6900] gi|284058164|gb|ADB69105.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5578] gi|284061211|gb|ADB72150.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5923] gi|293583288|gb|EFF95320.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes HPB2262] gi|293590710|gb|EFF99044.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes J2818] gi|293594528|gb|EFG02289.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J1-194] gi|300515378|gb|EFK42429.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes FSL N1-017] gi|328465962|gb|EGF37143.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 1816] gi|332312606|gb|EGJ25701.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str. Scott A] Length = 763 Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 256/732 (34%), Positives = 364/732 (49%), Gaps = 103/732 (14%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270 P + AR L KL YKK K + Y Y E G+ + + Sbjct: 82 PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 ++ DL+ + E+D F Y GL +L RY L + R E+PQ ++ +A+ L Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 E KEKR E Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ Sbjct: 193 MQNEP-KEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371 Query: 506 EVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 EV L D Y + F YE E AD K + + A+ + ++++ E Sbjct: 372 EVKAKKGWYLQDFYDESKGEGTFREKYE--ELVADETISK--KIVKAIDIMKRIMMSQLE 427 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEE 596 TG+P++ ++D N +P +H G+V+SSNLCTEI N S + + Sbjct: 428 TGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGD 487 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+NL + ++L I VR+LDNVID+N + +A +N +R+I Sbjct: 488 FVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSI 544 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKGS W Sbjct: 545 GLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDW 604 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + G + A + W EL K V G+RN+ +A+AP + A I Sbjct: 605 NTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIA 650 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G + SIDP Y Y + +++D + DL N+ Sbjct: 651 GSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NLST 684 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893 P A+++D + RRQ+ +DQ+ S N Y+ PSG KL ++ AW Sbjct: 685 YP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAW 738 Query: 894 LMGLKTTYYLRS 905 GLKTTYY+RS Sbjct: 739 NEGLKTTYYVRS 750 >gi|172058303|ref|YP_001814763.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium sibiricum 255-15] gi|171990824|gb|ACB61746.1| ribonucleoside-diphosphate reductase, alpha subunit [Exiguobacterium sibiricum 255-15] Length = 755 Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 242/686 (35%), Positives = 354/686 (51%), Gaps = 89/686 (12%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQA 319 E G+ L E+ ++ LA + RD F Y+GL+ L DRY + ++ E+PQ Sbjct: 116 EIGIFTPHLLETYTKEEVEELAASIDPSRDHLFTYIGLRTLSDRYLARDHVKKLYELPQE 175 Query: 320 FFMRVAMGLALKETEKEKRAVEF----YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 FM +AM L +TE ++R +E Y LS+ + +TPTL N+G + QLSSCF+ T Sbjct: 176 RFMIIAM--TLMQTEPKERRIELVKESYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDT 233 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TA Sbjct: 234 VDDSLRGIYDSNTDVATLSKGGGGIGVYMGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTA 293 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G R+G++ YL+ WH D+ EFLD + N GD+R RTHD+ T +PD FM+ V Sbjct: 294 VSVDQLGMRQGSIAVYLDIWHKDILEFLDAKLNNGDERLRTHDLFTGVSLPDHFMRTVEA 353 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYER--------QADRGEIKVFR-KISAVALW 546 W LF P E+ + G E +++ E+ A E ++ R K+ A+ L Sbjct: 354 RGDWYLFDPHEI---RTVMGFSLEDSFDETEQGGSFTEKYTACVNEPRLSRTKVPAIDLV 410 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----SEET----- 597 ++ + ETG P++ F+D N +P +H G+++SSNLC+EI N S +EE Sbjct: 411 KRYMRSQLETGTPYMFFRDAVNRANPNKHAGMIYSSNLCSEIMQNMSPTTVTEEYTEDGK 470 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL SI L N L I +R+LDNVID+N + +A+ Sbjct: 471 IIITKTPGDFVVCNLSSIALARAVREN-----VLERLIPIQMRMLDNVIDLNTIDVPQAQ 525 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RA+GLG G+ L L I + S EAV+ AD E I++ I AS++LA+E+GA Sbjct: 526 ITNQKYRAVGLGTFGWHHLLALEGIRWESVEAVQYADRLYEKIAYLTIDASMQLAKEKGA 585 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W G E T L WD L+ + GMRN+ MA+A Sbjct: 586 YRLFEGSEWQTG-----------EYIARRHYKTTPELNWDRLQADITAHGMRNAYLMAVA 634 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P ++ A I G + SIDP Y+ +Y + + V V +L W Sbjct: 635 PNSSTAIIAGSTASIDPIYKKVYAEEKKNYKIPVT----VPDLTPETNW----------- 679 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 + +AFEID +W I + RQ+ IDQA S NLY+ + K+L Sbjct: 680 ----------------FYKSAFEIDQLWSIRQNASRQRHIDQAISFNLYVKNSVKAKELL 723 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVE 912 ++ +AW +G+KT YY RS T+VE Sbjct: 724 EMHMEAWQLGMKTIYYTRS---TTVE 746 >gi|307571741|emb|CAR84920.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes L99] Length = 757 Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 251/734 (34%), Positives = 364/734 (49%), Gaps = 107/734 (14%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270 P + AR L KL YKK K + Y Y E G+ + + Sbjct: 76 PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 127 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 ++ DL+ + E+D F Y GL +L RY L + R E+PQ ++ +A+ L Sbjct: 128 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 186 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 ++ KEKR E Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ Sbjct: 187 -MQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 245 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 246 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 305 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P Sbjct: 306 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 365 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553 EV Y ++F Y+ G + + +KI A+ + ++++ Sbjct: 366 EVKAKKGWYLQDF------YDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 419 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S + Sbjct: 420 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 479 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + VCNL S+NL + ++L I VR+LDNVID+N + +A +N +R Sbjct: 480 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 536 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKGS Sbjct: 537 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGS 596 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 597 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 642 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + SIDP Y Y + +++D + DL N+ Sbjct: 643 IAGSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NL 676 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891 P A+++D + RRQ+ +DQ+ S N Y+ PSG KL ++ Sbjct: 677 STYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 730 Query: 892 AWLMGLKTTYYLRS 905 AW GLKTTYY+RS Sbjct: 731 AWNEGLKTTYYVRS 744 >gi|253574543|ref|ZP_04851884.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846248|gb|EES74255.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] Length = 777 Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 262/809 (32%), Positives = 397/809 (49%), Gaps = 107/809 (13%) Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEK- 212 ++F+S RL + + GL +V + +L + D ++ ++ A S+ L+ K Sbjct: 13 LAFDSARLGVYADRILQGLHNVDKERLLRGVNAKLRRDVVTGEEISNAFTMSALELVSKD 72 Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE----YFCRYIEEGVKARL 268 EP++ AR LL T++YKK ++ YPE F I E + + Sbjct: 73 EPDWKYAAARSLL--------TSLYKKAAVNRRYKA---YPEEPYGSFYHLITELCQLGI 121 Query: 269 LHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMR 323 E +++ + L + D F+Y+GL L +RY +G +E+PQ +M Sbjct: 122 YREELLECYTKEQIEELGRTIDPSCDLLFDYIGLLTLTERYLATDFDGRTMELPQERYMV 181 Query: 324 VAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380 +AM L KE E+++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 182 IAMYLMHKEPEEKRLELVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEARGEWH 361 Query: 501 LFSPDEVSD-------------LHDLYGKEFEIAYENYERQADRGEIKVFRKIS--AVAL 545 LF P EV L D Y +E E+ A+ +I+ A+ + Sbjct: 362 LFCPHEVKKTMGWKDENGRPLGLEDFYDEELGKG-SFREKYAEAVAHPTLSRITMPAIDI 420 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET--- 597 ++++ ETG P++ ++D N +P + G+++SSNLCTEI N S EE Sbjct: 421 MKRIMKSQLETGTPYMFYRDTVNRANPNRAHGMIYSSNLCTEIMQNQSPTVVEQEELVTK 480 Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 VCNL SI+L L + R+LDNVIDIN Sbjct: 481 DGQTRIVVSKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQTRMLDNVIDINNIE 535 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + +A+ +N +RAIGLG G L L I + S EAVE D E I++ I +S+ELA Sbjct: 536 VLQAQYTNSQYRAIGLGTFGLHHLLALEGIRWESQEAVEYNDALYEKINYLLIKSSMELA 595 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +E+G Y F GS W+ G + +S G + R+ + W EL+K V+ G+RN+ Sbjct: 596 KEKGKYPKFAGSDWETGQY-FESRGYVDGTREGKYVTTEQ---WRELQKEVRENGVRNAW 651 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 AIAP + + I G + SIDP Y+ L + + + + N +L ++ +W Sbjct: 652 MFAIAPNGSTSIIAGSTASIDPLYELLSYEEKTT--YKIANP--APDLSEKTIW------ 701 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 + TAF ID W IE A RQ+ +DQ QS NLY+ P Sbjct: 702 ---------------------YYKTAFLIDQHWSIEMAGARQRHVDQGQSFNLYV-RPDI 739 Query: 883 KKLDF--IYRQAWLMGLKTTYYLRSRSAT 909 + DF ++ AW GLK+TYY+RSR+ T Sbjct: 740 RATDFLDLHLHAWKAGLKSTYYVRSRALT 768 >gi|328784177|ref|XP_001121495.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Apis mellifera] Length = 610 Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 193/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%) Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EFLDL+KNTG + R ++ A WIPDLFMKRV N WTL P E L D++G EF Sbjct: 102 VFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEF 161 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 EI Y YE E + R+I A LW +L ETG P++ +KD CN +S Q++G Sbjct: 162 EILYTRYE-----NEKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQNIGT 216 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SSNLCTE+ SS +E AVCNL SI N+ + N FD+ KL + LD +I Sbjct: 217 IKSSNLCTEVVQYSSPDEVAVCNLASIAVNMFVNPINQTFDFQKLLKVTKIVTCNLDKII 276 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + I +A+KSN HR IG+G+ G A L+ P+ S EA ++ + E + + A+ Sbjct: 277 DVNYYPIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALE 336 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA+E+G Y +++GS +G+ D ++ T+ W LKK++ Sbjct: 337 ASCELAEEKGTYETYEGSPVSKGILQYDMWNVIP----------TNLWDWTILKKKIAKH 386 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F VVN L+ +L +RDLW Sbjct: 387 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDLTERDLW 446 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 DE M +++ ++GSI +IERIPDDLK ++ T +EI +++ A+ R +IDQ+QSLN++ Sbjct: 447 DEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSLNVH 506 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKG 918 + +P+ +KL ++ W MGLKT YYLR++ A +V+KS L+ Sbjct: 507 MAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAANALQFTVDKSKLRN 554 >gi|295103294|emb|CBL00838.1| ribonucleoside-diphosphate reductase, alpha subunit [Faecalibacterium prausnitzii SL3/3] Length = 817 Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 275/865 (31%), Positives = 424/865 (49%), Gaps = 146/865 (16%) Query: 95 IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKLKIMMDD 151 +E +QD+VE +LM+ GH+++ + Y+LYRE+RS +R + + + D + L+ + D Sbjct: 36 VERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDSLDEVLRRIQMD 95 Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211 T ++ L+M E C G++E + AL ++ L Sbjct: 96 FTEEVYSLAALQMKFESFCRL-------------------GMTEDERAEALTKAAVELTT 136 Query: 212 KE-PNYAKVTARFLLEKLR--------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 E P + + AR L R + +Y K + T + LY +Y Sbjct: 137 AEAPKWEFIAARLLNHSFRCRNAQEWEGRGVCDLYGKLRYLTD---KGLYGDY------- 186 Query: 263 GVKARLLHESMMDFDLVYLAND-LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQA 319 + A HE + +A D L ERD F Y GL +L RY + + SR+ E PQ Sbjct: 187 -ILAHYTHEE------IAMAEDFLCPERDELFTYSGLDLLLKRYVIQ-SRSRVPLETPQE 238 Query: 320 FFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ +A+ LA+ E +++ FY++LS +TPT+ N+ + QLSSCF+ TVPD Sbjct: 239 MFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDTVPD 298 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ +L A ++K+ GG+G + VR G+ I G G + GVI ++++ NDTAVAV Sbjct: 299 SLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAVAV 358 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496 +Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + +N Sbjct: 359 DQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEENID 418 Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 A W L P E+ L D +G E+E + Y + I+ R ++ + R +L Sbjct: 419 APWHLMCPHEILTVKGYALEDYWGTEWE---KRYLDCVNDPRIEK-RSVTVKDIVRLVLR 474 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSE---------- 595 ETG P+ +D N +P H G+++ SNLCTEI N S+E Sbjct: 475 SAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGDTIV 534 Query: 596 -------ETAVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 E VCNL S++L N D + T+ TA+R LDNVID+N + +E A+ Sbjct: 535 VTATRPGEFVVCNLASLSL----GNLPVEDEAYMERTVETAIRALDNVIDLNFYPLEYAR 590 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R+IGLG+ G+ L I + S E + D E I++ A+ A LA+E+G Sbjct: 591 LTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAREKGR 650 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y+ F+GS W G + + G +E W L K V GMRN+ +A+A Sbjct: 651 YALFEGSDWQTGAY-FEKRGYTSE-------------KWRALAKTVAVQGMRNAYLLAVA 696 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + + G S IDP ++ F + E K Sbjct: 697 PTSSTSILSGTSAGIDP----------------IMKKFFLEEKK---------------- 724 Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 GS+ + R+ +L + A ID W + +A RQ+ IDQAQS+NLY+ ++ S Sbjct: 725 -GSM--LPRVAPELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSM 781 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y +AW G+KT YY+RS++ Sbjct: 782 RQVLRLYLEAWRAGVKTIYYVRSKA 806 >gi|16801323|ref|NP_471591.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria innocua Clip11262] gi|16414771|emb|CAC97487.1| lin2259 [Listeria innocua Clip11262] Length = 763 Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 251/734 (34%), Positives = 364/734 (49%), Gaps = 107/734 (14%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270 P + AR L KL YKK K + Y Y E G+ + + Sbjct: 82 PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 ++ DL+ + E+D F Y GL +L RY L + R E+PQ ++ +A+ L Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 ++ KEKR E Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ Sbjct: 193 -MQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553 EV Y ++F Y+ G + + +KI A+ + ++++ Sbjct: 372 EVKAKKGWYLQDF------YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 425 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S + Sbjct: 426 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 485 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + VCNL S+NL + ++L I VR+LDNVID+N + +A +N +R Sbjct: 486 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 542 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKGS Sbjct: 543 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGS 602 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 603 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 648 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + SIDP Y Y + +++D + DL N+ Sbjct: 649 IAGSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NL 682 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891 P A+++D + RRQ+ +DQ+ S N Y+ PSG KL ++ Sbjct: 683 STYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 736 Query: 892 AWLMGLKTTYYLRS 905 AW GLKTTYY+RS Sbjct: 737 AWNEGLKTTYYVRS 750 >gi|217963684|ref|YP_002349362.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes HCC23] gi|290893102|ref|ZP_06556090.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J2-071] gi|217332954|gb|ACK38748.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes HCC23] gi|290557264|gb|EFD90790.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J2-071] Length = 763 Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 251/734 (34%), Positives = 364/734 (49%), Gaps = 107/734 (14%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270 P + AR L KL YKK K + Y Y E G+ + + Sbjct: 82 PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 ++ DL+ + E+D F Y GL +L RY L + R E+PQ ++ +A+ L Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 ++ KEKR E Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ Sbjct: 193 -MQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553 EV Y ++F Y+ G + + +KI A+ + ++++ Sbjct: 372 EVKAKKGWYLQDF------YDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 425 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S + Sbjct: 426 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 485 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + VCNL S+NL + ++L I VR+LDNVID+N + +A +N +R Sbjct: 486 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 542 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKGS Sbjct: 543 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGS 602 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 603 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 648 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + SIDP Y Y + +++D + DL N+ Sbjct: 649 IAGSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NL 682 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891 P A+++D + RRQ+ +DQ+ S N Y+ PSG KL ++ Sbjct: 683 STYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 736 Query: 892 AWLMGLKTTYYLRS 905 AW GLKTTYY+RS Sbjct: 737 AWNEGLKTTYYVRS 750 >gi|319655056|ref|ZP_08009125.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2] gi|317393251|gb|EFV74020.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2] Length = 740 Score = 356 bits (914), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 245/732 (33%), Positives = 365/732 (49%), Gaps = 94/732 (12%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP++ +R LL+KL E +P H F IE + + Sbjct: 57 EPDWTFAASRLLLKKLYTESGKNRECQPDDCYKH---------FYTLIERLTALGIYDQD 107 Query: 273 MMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMG 327 ++D ++ LA +K E D F YLGL++L DRY + E+PQ FM ++M Sbjct: 108 LLDVYSKDEINELAQFIKKENDRLFTYLGLKMLADRYLARDKQKNLYELPQERFMIISMV 167 Query: 328 LALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 L +E + ++ + E Y +S + +TPTL N+G QLSSCF+ TV D L I+ Sbjct: 168 LMKREPKGKRLELIKEAYWAMSGLYMTVATPTLANAGKNWGQLSSCFIETVDDSLDSIYD 227 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+V+Q G+R+ Sbjct: 228 SNTDIASLSKNGGGIGVYLGKIRSRGSDIKGFKGASSGVIPWMKQLNNTAVSVDQLGQRQ 287 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ WH D+ FLD + N GD+R+RTHD+ T IPDLFM++V W LF P Sbjct: 288 GAISVYLDVWHKDIFSFLDAKLNNGDERQRTHDLFTGVCIPDLFMEKVESRGYWYLFDPH 347 Query: 506 EVS-----DLHDLYGK-EFEIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 EV L D Y + E E ++ + Y+ D + K+ A+ + + ++ ETG Sbjct: 348 EVRKVMGFSLEDFYDEGEGEGSFRQKYKECIDNPNLSR-EKVPAIDIMKSIMRSQLETGT 406 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------------AV 599 P++ ++D N ++ H G+++ +NLCTEI N S + V Sbjct: 407 PFMFYRDEVNRKNANSHCGMIYCTNLCTEIVQNQSVTKRVEEYTRDGRIIIEKHPGDFVV 466 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL SINL + L + VR+LDNVIDIN + + + +N +RAIGLG Sbjct: 467 CNLSSINLARAISEGV-----LERLVPIQVRMLDNVIDINSIPVPQGQITNQKYRAIGLG 521 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G+ L L I + S EA + AD E I+F AI +S++LA+E+G+YS+FKGS W+ G Sbjct: 522 TFGWHHLLALKKITWESEEAEKFADILYEQIAFLAIKSSMDLAKEKGSYSAFKGSDWETG 581 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + L AE S + W L K V G+RN+ +A+AP A+ A I G + Sbjct: 582 AYFEKRGYLEAE----------SDMDWAALSKEVSENGVRNAYLLAVAPNASTALIAGST 631 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SIDP + Y S D+ + ++ +W Sbjct: 632 PSIDPIFNKQY--SEEKKDYRI--PVTAPDINSETIW----------------------- 664 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDF--IYRQAWLMG 896 + +A+ I+ W I + RQK IDQA S N Y+ P+ K +D ++ AW Sbjct: 665 ----YYKSAYHINQEWSIRQNANRQKHIDQAISFNFYI--PNHIKAIDLLNLHLSAWKKK 718 Query: 897 LKTTYYLRSRSA 908 LKTTYY+RS S+ Sbjct: 719 LKTTYYIRSTSS 730 >gi|167461831|ref|ZP_02326920.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383592|ref|ZP_08057350.1| ribonucleotide-diphosphate reductase subunit alpha-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152060|gb|EFX44996.1| ribonucleotide-diphosphate reductase subunit alpha-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 761 Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 242/682 (35%), Positives = 346/682 (50%), Gaps = 90/682 (13%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQA 319 E+G+ L +S ++ L ++ E+D F Y+GL L +RY G E+PQ Sbjct: 125 EKGIYKAELIDSYSREEIEDLGRAIQPEKDKLFPYVGLITLAERYLATGFAGEFYELPQE 184 Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376 FM +AM L ++E + + K E Y LS+ + +TPTL N+G R QLSSCF+ TV Sbjct: 185 RFMIIAMQLMIQEKRSTRLKWVKEAYWALSNQYMTVATPTLSNAGKARAGQLSSCFIDTV 244 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L GI+ + + A L+K GG+G VR G+ I G GKS GV+P+++ N+TAV Sbjct: 245 DDSLQGIYDSNTDIARLSKMGGGIGVYMGKVRSRGSDIRGYKGKSSGVLPWIRQLNNTAV 304 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +V+Q G RKG++ YL+ WH D+ FLDL+ N GD+R R HD+ IPDLFM+ V Q Sbjct: 305 SVDQLGTRKGSIAVYLDVWHKDILSFLDLKLNNGDERLRAHDIFPGVCIPDLFMEAVEQR 364 Query: 497 AGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALW 546 + LF P EV L DLY ++ F YE V A+ + Sbjct: 365 GEFHLFDPHEVRQVMGYSLEDLYDEKVGEGSFRTKYEECVNNPQLSRTTV----QAIDIM 420 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595 +++L ETG P++ ++D N +P +H G+++SSNLCTEI N S+ Sbjct: 421 KRILISQLETGTPYMFYRDTVNRANPNKHKGMIYSSNLCTEIMQNMSATTLIEEELNDGE 480 Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + VCNL SI+L + L I +R+LDNVIDIN + +A Sbjct: 481 IVIRKQAGDFVVCNLSSIHLARAVPDG-----VLERLIPVQIRMLDNVIDINRIEVPQAT 535 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RAIGLG G L L I + S EAV + E ISF AI AS+ELA+E+GA Sbjct: 536 YTNKRYRAIGLGTFGLHHLLALKKIQWESEEAVVYNEALYERISFLAIQASMELAREKGA 595 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W+ G + + G +E W +L+++ K GMRN MA+A Sbjct: 596 YPLFEGSGWETGEY-FELKGYKSE-------------EWKKLQQQTKENGMRNGYLMAVA 641 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + I G + SIDP Y + + + + + N +L + +W Sbjct: 642 PNGSTSIIAGSTASIDPIYDLISYEEKTT--YKIANP--APDLSPQTIW----------- 686 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 + TAF ID W I AS RQ+ IDQ QS NLY+ +P K F Sbjct: 687 ----------------YYKTAFHIDQHWSIRQASARQRHIDQGQSFNLYV-KPDIKAKQF 729 Query: 888 --IYRQAWLMGLKTTYYLRSRS 907 ++ AW GLK +YY+RSR+ Sbjct: 730 LELHLDAWRSGLKASYYVRSRA 751 >gi|116873588|ref|YP_850369.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742466|emb|CAK21590.1| ribonucleoside-diphosphate reductase alpha chain [Listeria welshimeri serovar 6b str. SLCC5334] Length = 764 Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 251/714 (35%), Positives = 361/714 (50%), Gaps = 90/714 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLK 286 R L +YKK K + Y Y E G+ + + ++ DL+ + Sbjct: 90 RLYLNKLYKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEDLIVAGKLID 149 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVE 341 E+D F Y GL +L RY L + R E+PQ ++ +A+ L ++ KEKR E Sbjct: 150 PEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMKLVEE 207 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G Sbjct: 208 AYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVG 267 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 VR GA I G G S GVIP++K N+TAV+V+Q G+RKGA+ YL+ +H D+E Sbjct: 268 AYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIES 327 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGK 516 FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P EV L D Y + Sbjct: 328 FLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDE 387 Query: 517 EFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 I E YE I + + A+ + ++++ ETG+P++ ++D N +P + Sbjct: 388 SKGIGTFREKYEELVADETISK-KIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNPNK 446 Query: 575 HVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINL-LAHFANN 614 H G+V+SSNLCTEI N S + + VCNL S+NL A A Sbjct: 447 HEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVLAEE 506 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 + ++L I VR+LDNVID+N + +A +N +R+IGLG G+ L L +I + Sbjct: 507 EGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIAW 563 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + ADE E I++ AI AS +LAQE+GAY FKGS W+ G + Sbjct: 564 DSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEY------------- 610 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 A + W EL K V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 611 -FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE-- 667 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +++D + DL N+ P A+++D Sbjct: 668 ----------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYKVDQF 699 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905 + RRQ+ +DQ+ S N Y+ PSG KL ++ AW GLKTTYY+RS Sbjct: 700 ASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 751 >gi|332971064|gb|EGK10034.1| ribonucleotide-diphosphate reductase alpha subunit [Desmospora sp. 8437] Length = 749 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 251/727 (34%), Positives = 364/727 (50%), Gaps = 93/727 (12%) Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +EP++ V +R L +L E ++ KP + ++ L E GV + LL Sbjct: 70 EEPDWTFVASRIYLLRLYEEASRHPFRQGKPYGDFYELIRGL--------TESGVYSPLL 121 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL 328 E+ ++ LA ++ ERD F Y GL+ L DRY G E+PQ F+ +AM L Sbjct: 122 LETYTRAEIGELAMMIRPERDHLFTYAGLRTLADRYLARSREGELYELPQERFLVIAMVL 181 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 +E E+E+R E Y LS+ + +TPTL N+G QLSSCF+ V D L GI+ Sbjct: 182 MSRE-ERERRLHWVREAYWALSNLYMTVATPTLSNAGKDFGQLSSCFVDVVDDSLQGIYD 240 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K GGLG +R G+ I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 241 SNTDVARVSKGGGGLGVYLGKIRSRGSDIKGYKGISSGVIPWMKQLNNTAVSVDQLGQRK 300 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 G++ YL+ WH D+ FLD + N GD+R RTHD+ T IPDLFM+ V W LF P Sbjct: 301 GSIAVYLDIWHQDILSFLDAKLNNGDERLRTHDLFTGVCIPDLFMEAVEAREDWHLFDPH 360 Query: 506 EVS-----DLHDLYG-KEFEIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 ++ L D Y K E ++ E Y + E+ + A+ L ++++ ETG Sbjct: 361 QIRRVMGWSLEDFYDEKRGEGSFREKYAACVEHPELDR-TTVPAIELMKRIMVSQLETGT 419 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAV 599 P++ ++D N ++P H G+++ SNLCTEI N S + V Sbjct: 420 PYMFYRDEANRKNPNHHAGLIYCSNLCTEIMQNMSPTLLREERVEEGKILITKEPGDFVV 479 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL SINL + L I VR+LDNVID+N + +A+ +N +RAIGLG Sbjct: 480 CNLSSINLGRAVPDG-----VLKRLIPVQVRMLDNVIDLNTIEVPQARITNQKYRAIGLG 534 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G+ L + I + S EAV +E I++ I AS+ELA+E+G Y F GS W G Sbjct: 535 TFGWHHLLAVKGIRWESEEAVRFGEELYGEIAYLTIRASMELAREKGPYPLFAGSDWQTG 594 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + GL E PW L + V+ G+RN+ MA+AP A+ + I G + Sbjct: 595 AY-FEKRGLREE-------------PWHSLAEDVRHHGLRNAWLMAVAPNASTSLIAGST 640 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SIDP ++ Y + + V L E W Sbjct: 641 ASIDPVFRREYSEEKKNYKIPVTAPDLTPETG----W----------------------- 673 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 + A EID W + A+ RQ++IDQ+QSLNLY+ + + L ++ AW GLK Sbjct: 674 ----YYKPAHEIDQRWSLRQAAARQRYIDQSQSLNLYVRHDIKARDLLDLHLTAWKSGLK 729 Query: 899 TTYYLRS 905 TTYYLRS Sbjct: 730 TTYYLRS 736 >gi|313632344|gb|EFR99386.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria seeligeri FSL N1-067] Length = 759 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 246/718 (34%), Positives = 361/718 (50%), Gaps = 99/718 (13%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLK 286 R L +YKK K + Y Y E G+ + + ++ +L+ + Sbjct: 86 RLYLNKLYKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEELIEAGKLID 145 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVE 341 E+D F Y GL +L RY L + R E+PQ ++ +A+ L ++ KEKR E Sbjct: 146 PEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMNLVGE 203 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G Sbjct: 204 AYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVG 263 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 VR GA I G G S GVIP++K N+TAV+V+Q G+RKGA+ YL+ +H D+E Sbjct: 264 AYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIES 323 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P EV Y ++F Sbjct: 324 FLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDF--- 380 Query: 522 YENYERQADRGEIK-----------VFRKI-SAVALWRKMLTMLFETGHPWITFKDPCNI 569 Y+ G + + +KI A+ + ++++ ETG+P++ ++D N Sbjct: 381 ---YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQLETGNPFMFYRDEVNR 437 Query: 570 RSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLLAH 610 +P +H G+V+SSNLCTEI N S + + VCNL S+NL Sbjct: 438 MNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRA 497 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + ++L I VR+LDNVID+N + +A +N +R+IGLG G+ L L Sbjct: 498 VVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALK 554 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +I + S EA + ADE E I++ AI+AS +LAQE+GAY FKGS W+ G + Sbjct: 555 NIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKGSDWNTGEY--------- 605 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 A + W EL K V G+RN+ +A+AP + A I G + SIDP Y Y Sbjct: 606 -----FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFY 660 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +++D + DL N+ P A++ Sbjct: 661 YE------------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYK 690 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905 +D + RRQ+ +DQ+ S N Y+ PSG KL ++ AW GLKTTYY+RS Sbjct: 691 VDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 746 >gi|289435503|ref|YP_003465375.1| ribonucleoside-diphosphate reductase alpha chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171747|emb|CBH28293.1| ribonucleoside-diphosphate reductase alpha chain [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 763 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 246/718 (34%), Positives = 361/718 (50%), Gaps = 99/718 (13%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLK 286 R L +YKK K + Y Y E G+ + + ++ +L+ + Sbjct: 90 RLYLNKLYKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEELIEAGKLID 149 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVE 341 E+D F Y GL +L RY L + R E+PQ ++ +A+ L ++ KEKR E Sbjct: 150 PEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMNLVGE 207 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G Sbjct: 208 AYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVG 267 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 VR GA I G G S GVIP++K N+TAV+V+Q G+RKGA+ YL+ +H D+E Sbjct: 268 AYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIES 327 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P EV Y ++F Sbjct: 328 FLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDF--- 384 Query: 522 YENYERQADRGEIK-----------VFRKI-SAVALWRKMLTMLFETGHPWITFKDPCNI 569 Y+ G + + +KI A+ + ++++ ETG+P++ ++D N Sbjct: 385 ---YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQLETGNPFMFYRDEVNR 441 Query: 570 RSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLLAH 610 +P +H G+V+SSNLCTEI N S + + VCNL S+NL Sbjct: 442 MNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRA 501 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + ++L I VR+LDNVID+N + +A +N +R+IGLG G+ L L Sbjct: 502 VVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALK 558 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +I + S EA + ADE E I++ AI+AS +LAQE+GAY FKGS W+ G + Sbjct: 559 NIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKGSDWNTGEY--------- 609 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 A + W EL K V G+RN+ +A+AP + A I G + SIDP Y Y Sbjct: 610 -----FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFY 664 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +++D + DL N+ P A++ Sbjct: 665 YE------------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYK 694 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905 +D + RRQ+ +DQ+ S N Y+ PSG KL ++ AW GLKTTYY+RS Sbjct: 695 VDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 750 >gi|219118138|ref|XP_002179850.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408903|gb|EEC48836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 926 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 255/841 (30%), Positives = 409/841 (48%), Gaps = 132/841 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSET-YKNMYDGLSESDLETAL 202 L + DG L +S +L + + GL + + L+E+ + MY ++ +++ Sbjct: 67 LHVSKRDGRLELLDSTKLLQRLTDLSDGLDMRFLNLVALTESIVRGMYPNVTTHEIDVLA 126 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEY 255 ++ +L + P+Y ++ AR L+ + + E + T+Y + H++ L Sbjct: 127 AETAASLGTQHPDYGRLAARILITQNHKTTPTCFSEAIETLYNSGKGFIDHKVGEL---- 182 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRI 314 R + +R++HE RD Y G + L Y L NG+++ Sbjct: 183 -VRRRGPEIDSRIVHE-----------------RDLEMTYFGYKTLERAYLLKKDNGNQV 224 Query: 315 -EMPQAFFMRVAMGL-------ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 E PQ MRVA+G+ + E + + A E Y+L+S F ++PTLF++GT HP Sbjct: 225 LERPQYLMMRVALGIHCTSKMSSRSEDDCLEAAFETYDLMSRGFFTHASPTLFHAGTTHP 284 Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSCFL + +D + GI+ L+ A+++K +GG+G +R G I GT G S G++ Sbjct: 285 QLSSCFLVQMSEDSINGIYDTLKRCAVISKAAGGIGLSVHNIRARGTPIQGTRGVSNGLV 344 Query: 426 PFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 P L+V + T+ V+QGG KR GA YLE WH D+ + L L+KN G + +R D+ W Sbjct: 345 PMLRVFDVTSRYVDQGGGKRPGAFAIYLEPWHADIFDVLSLKKNHGKEEQRARDLFYGLW 404 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV ++ W+L P + L YG +FE Y++YE++ K R++ A Sbjct: 405 IPDLFMKRVEEDDVWSLMCPHQCPGLAHCYGAKFEALYQHYEQEG-----KFVRQVRARE 459 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LW +L ETG P++ +KD CN +S QQ++G + SNLCTEI S EETAVCNL S Sbjct: 460 LWGAILESQIETGTPYMLYKDTCNTKSNQQNIGTIQCSNLCTEIIQYSDQEETAVCNLAS 519 Query: 605 INLLAHFANNQ--------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 I L + + FD++ L + R L+++ID+N + ++ AK SN Sbjct: 520 ICLPRFVVSERGTFGSISPESGSAFFDHEALHRAAKIVTRNLNSIIDVNSYPVDGAKTSN 579 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A L +P+ S A ++ + E I A+ AS ELA++ G Y + Sbjct: 580 FKHRPIGIGVSGLADAFLRLGLPFTSAAAKKLNEAIFETIYHAALEASAELAEKEGPYET 639 Query: 711 FKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLP--------------WDELKKRVK 754 F GS QG + GL + + A+ + + +P W+ L++R+ Sbjct: 640 FAGSPASQGKLQFNLWGLSDDETPSHKYALAKETPVPIQMYPNSSNVCGYDWESLRRRIV 699 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +S T V+S + + Sbjct: 700 KTGLRNS---------------------------------LSWASTSVSSLSAQTFRNQM 726 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + D GS+ NI IPD LK+++ T +EI +I+ + R K+IDQ Sbjct: 727 MRD----------GGSVQNIPDIPDRLKELYKTVWEIKMKDIIDMGADRGKFIDQ----- 771 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK--LNAVPVTDP 931 P+ KL ++ AW GLKT YYLR++ A + + T++ + + +P +P Sbjct: 772 ----NPNMDKLTAMHFYAWKKGLKTGMYYLRTKPAVNAIQYTVEKISPTVIVGGIPEAEP 827 Query: 932 N 932 + Sbjct: 828 D 828 >gi|310639979|ref|YP_003944737.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] gi|309244929|gb|ADO54496.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] Length = 812 Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 251/801 (31%), Positives = 397/801 (49%), Gaps = 91/801 (11%) Query: 155 ISFNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 ++F+ R+ + + SGL + +++ T K D ++ ++ A ++ L+ KE Sbjct: 48 LAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDEISNAFAMAALELVSKE 107 Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 P++ AR LL L ++ T +++ + YP +++G+ + L + Sbjct: 108 EPDWKFAAARALLTSLYKKAAT--HRRYKSYADEPYGAFYP-LITDLVQKGIYRQELLDC 164 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 + L + + + D F+Y+GL L +RY + +G +E+PQ +M +AM L + Sbjct: 165 YTKEQIDELGDSILPQNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMIIAMYLMHQ 224 Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388 E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L GIF + Sbjct: 225 EPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 284 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q G RKGA+ Sbjct: 285 DVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 344 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+RV W LF P EV Sbjct: 345 AVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWNLFCPHEVK 404 Query: 509 D-------------LHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTML 553 L D Y + F E YE +A + I + A+ + ++++ Sbjct: 405 KVMGWKDDKGRPLGLEDFYDEAFGSGSFREKYE-EASKHPILSRITVPAIDIMKRLMKSQ 463 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595 ETG P++ ++D N +P + G+V+SSNLCTEI N S+ Sbjct: 464 LETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEELVTKDGQTRIVI 523 Query: 596 -----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 + VCNL SI+L D + VR+LDNVIDIN + +A+ +N Sbjct: 524 SKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDINNIEVLQAQYTN 578 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +RA+GLG G L L I + S EAV D E I++ A+ +S+ELA+E+G Y+ Sbjct: 579 SQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSMELAKEKGRYAK 638 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F+GS W G + S G R+ + + W EL + V+ G+RN+ AIAP Sbjct: 639 FEGSDWATGHY-FTSRGYTDGTREGKFVTTSE---WSELAEEVQQNGVRNAWLFAIAPNG 694 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + + I G + SIDP Y+ L + + + + N +L ++ +W Sbjct: 695 STSIIAGSTASIDPLYELLSYEEKTT--YKIANP--APDLNEKTIW-------------- 736 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--I 888 + TAF +D I AS RQ+ IDQ QS NLY+ P K +F + Sbjct: 737 -------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYV-RPDIKATEFLEL 782 Query: 889 YRQAWLMGLKTTYYLRSRSAT 909 + AW G+K+TYY+RSR+ T Sbjct: 783 HIHAWKSGMKSTYYVRSRALT 803 >gi|297379875|gb|ADI34762.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter pylori v225d] Length = 788 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 193/451 (42%), Positives = 275/451 (60%), Gaps = 20/451 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 FKD N +P H G++ SSNLCTEI N++ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%) Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +TAVCNL SINL N + D ++ + VR+LDNVID+N + K K +N +RA Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L I + S E +E D ME IS+HAI S LA+E+G Y F+ S Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+FPID A E + + W L+++VK GMRN MAIAPT++I+ + Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQSLREKVKANGMRNGYLMAIAPTSSISIL 666 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G +Q+I+P Y+ + + N+SG VV L + W+ Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NLETWN------------------ 703 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893 + +A++ID LI++A+ RQKWIDQ QS+N++L + SGK L IY AW Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755 Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916 +GLK+TYYLRS S + EKS L Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778 >gi|255028523|ref|ZP_05300474.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes LO28] Length = 620 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 239/655 (36%), Positives = 340/655 (51%), Gaps = 92/655 (14%) Query: 288 ERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVEF 342 E+D F Y GL +L RY L + R E+PQ ++ +A+ L ++ KEKR E Sbjct: 8 EKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMKLVEEA 65 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G Sbjct: 66 YWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGA 125 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 VR GA I G G S GVIP++K N+TAV+V+Q G+RKGA+ YL+ +H D+E F Sbjct: 126 YLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIESF 185 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE 517 LDLR N GD R R HD+ TA IPD+FM+ V + W LF P EV L D Y + Sbjct: 186 LDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDES 245 Query: 518 -----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 F YE E AD K + + A+ + ++++ ETG+P++ ++D N +P Sbjct: 246 KGEGTFREKYE--ELVADETISK--KIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNP 301 Query: 573 QQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLLAHFAN 613 +H G+V+SSNLCTEI N S + + VCNL S+NL Sbjct: 302 NKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVA 361 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + ++L I VR+LDNVID+N + +A +N +R+IGLG G+ L L +I Sbjct: 362 EEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIA 418 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S EA + ADE E I++ AI AS +LAQE+GAY FKGS W+ G + Sbjct: 419 WDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEY------------ 466 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 A + W EL K V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 467 --FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE- 523 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +++D + DL N+ P A+++D Sbjct: 524 -----------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYKVDQ 554 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905 + RRQ+ +DQ+ S N Y+ PSG KL ++ AW GLKTTYY+RS Sbjct: 555 FASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 607 >gi|330837705|ref|YP_004412346.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta coccoides DSM 17374] gi|329749608|gb|AEC02964.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta coccoides DSM 17374] Length = 848 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 275/916 (30%), Positives = 432/916 (47%), Gaps = 124/916 (13%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89 +IKR G ++ KI+ A+ AF ASRS D I+ LT + L + + S Sbjct: 7 IIKRTGKPETYQEHKITAAMKAAF-------ASRSHTADDTILSRLTGEVHDELTRLHAS 59 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 +V +E IQD VE LM+ + + + Y+LYR R+ R + + P+ P+L Sbjct: 60 GTMVDVELIQDTVEKILMKHEYFDVAKSYILYRSVRTKKRDDRKKILNLLPV-PEL---- 114 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALIFSSR 207 + LIS +D + + + S+ +ET +L R Sbjct: 115 -EPVLISIQ---------------RDYADAPYQLDLLYGKFSAFSKPGMETDESLGMLVR 158 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVKA 266 +E A F+ +LR + KK + + + L+ + R++ EG+ Sbjct: 159 AAVEMTTQDAP-DWEFIAARLRYLQFSLTLKKQE--SRYGFSDLFGK--IRFLTTEGLYG 213 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325 + E ++ A + +R+ Y L +L RY + + G +E PQ F+ +A Sbjct: 214 AYILEKYTHEEIDRAAAFIDEKRNDFLTYSALDLLLQRYVIRSHEGELLETPQELFLGIA 273 Query: 326 MGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 + LA+ E + V FY+++S+ +TPTL N+ + QLSSCF+ TVPD L GI+ Sbjct: 274 LHLAMDEKKDRLDWVRRFYDMISTLKVTMATPTLSNARKPYHQLSSCFIDTVPDTLDGIY 333 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ + ++K+ GG+G + VR +G+ I G + GVI ++K+ANDTAVAV+Q G R Sbjct: 334 RSVTNFSQVSKFGGGMGLYFGKVRAVGSAIRDFKGVAGGVIRWIKLANDTAVAVDQLGMR 393 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502 +GAV YL+ WH D+ EFL LR N GDDR + HD+ PDLF + V + W L Sbjct: 394 QGAVAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDVFPGVCYPDLFWRMVENDIEGTWNLM 453 Query: 503 SPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P E+ L D YG E+E Y +E D K R I L R ++ ETG Sbjct: 454 CPYEIYKVKGYHLEDSYGDEWEKRY--HECLNDPAVPK--RPIKIKELVRMIIKSGVETG 509 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------------S 592 P+ F+D N +P H G+++ SNLCTEI N + Sbjct: 510 TPFAFFRDAVNKANPNAHKGMIYCSNLCTEIAQNMAPITQESVEVTTEGAGGDIVVVEKT 569 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 E VCNL S+ +L + N D ++ + VR LDNVID+N + + A+ +N Sbjct: 570 KPGEFVVCNLASL-VLGNI--NVDDPVEVEGIVTATVRALDNVIDLNMYPVPYAEITNKR 626 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RAIGLG G+ L + + S + IAD E I++ A+ AS ++A E+G+Y+ F+ Sbjct: 627 YRAIGLGTSGYHHMLAKKGVAWESEAHLGIADRVFEAINYWAVKASSDIAAEKGSYAYFE 686 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + D + W L+ V GMRN+ +AIAPT++ Sbjct: 687 GSDWQTGAY-FDKRNYTGD-------------RWAALRSTVAKQGMRNAYLIAIAPTSST 732 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + G + +DP + +++ V EL + W Sbjct: 733 SILAGTTAGLDPVLRRFFLEEKKKNILPRV----APELSPKTYW---------------- 772 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A ID +W + +A RQ+ +DQAQSLNLY+ + S +++ +Y + Sbjct: 773 -----------LYKNAHLIDQIWTVRAAGVRQRHVDQAQSLNLYITTDMSFRQIMNLYVE 821 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YYLRS++ Sbjct: 822 AWKNGVKTIYYLRSKA 837 >gi|188527475|ref|YP_001910162.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Shi470] gi|188143715|gb|ACD48132.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Shi470] Length = 788 Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 193/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 FKD N +P H G++ SSNLCTEI N++ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%) Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +TAVCNL SINL N + D ++ + VR+LDNVID+N + K K +N +RA Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L I + S E +E D ME IS+HAI S LA+E+G Y F+ S Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+FPID A E + + W L+++VK GMRN MAIAPT++I+ + Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G +Q+I+P Y+ + + N+SG VV L + W+ Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NLETWN------------------ 703 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893 + +A++ID LI++A+ RQKWIDQ QS+N++L + SGK L IY AW Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755 Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916 +GLK+TYYLRS S + EKS L Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778 >gi|254517516|ref|ZP_05129572.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp. 7_2_43FAA] gi|226911265|gb|EEH96466.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp. 7_2_43FAA] Length = 743 Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 257/765 (33%), Positives = 395/765 (51%), Gaps = 111/765 (14%) Query: 188 NMYDG-LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 NM D + +S ++ AL +S + EP + AR + KL ++ +K ++ + Sbjct: 38 NMKDEEIRDSIIQVALELTS----DMEPRWQNAAARLYVFKLYDKI-----RKNREINND 88 Query: 247 EMQCLYPE---YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 E +Y + + + E+G+ + + E+ +++ L N++K ERDF F Y G+ +L Sbjct: 89 EN--IYGDLYGFINKLTEKGLYGKYILENYTREEILELENEIKPERDFLFTYSGINLLAK 146 Query: 304 RYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359 RY + + S +E+PQ FM +AM LA+ E +KE R A FY++LSS +TPT+ Sbjct: 147 RYLIQDFDRSILELPQQMFMGIAMHLAIPE-KKEVRVLWAKRFYDVLSSLKATMATPTMS 205 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N+ QLSSCF+ TV D L GI+ +L A ++K+ GG+G VR L + I G G Sbjct: 206 NARKPFYQLSSCFIDTVQDSLKGIYKSLDNFAEVSKFGGGMGIYIGKVRALESPIRGFKG 265 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S GVIP++K+ NDTA+AV+Q G R G+V +L+ WH D+ EFL L+ N GDDR++ HD+ Sbjct: 266 ASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDLPEFLQLKTNNGDDRKKAHDV 325 Query: 480 NTANWIPDLFMKRVTQ--NAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRG 532 PDLF K +A W + P E+ L D YG+E+E Y YE D Sbjct: 326 FPGLCYPDLFWKLAETDIDANWYMMCPHEIRLAKGYSLEDFYGEEWEKKY--YECVEDDS 383 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 K R +S + R ++ ETG P+ ++D N +P +H G+++SSNLCTEI N Sbjct: 384 ISK--RVMSVKEIVRLIIKSAAETGTPFAFYRDTVNKMNPNKHKGMIYSSNLCTEIMQNM 441 Query: 593 SS------------------EET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SS E+T VCNL S+ L N ++L + T + Sbjct: 442 SSMDIQQSEVKDENGDTIIIEKTKSGDFVVCNLSSVVLGNIDVKND---EELGYVVETQI 498 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R +DNVID+N +++ A+ +N +RAIGLG G+ L I + E AD+ E Sbjct: 499 RAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNLIHWTEDSHKEFADDVYER 558 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I++HAI AS+ +++E+G YS F+GS W G + EL ++ + W++L Sbjct: 559 INYHAIKASMNISKEKGRYSCFEGSDWHNGNYF------------ELRGYKSEK--WNQL 604 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++ V T GMRN MA+AP + A I G S+ IDP V+ F + E Sbjct: 605 REEVNTHGMRNGYLMAVAPNGSTATIAGTSEGIDP----------------VMARFWLEE 648 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQK 865 K GSI I + +L + + +A+ ID W ++ RQ+ Sbjct: 649 KK-----------------GSI--IPKTAPNLSEENYWYYNSAYNIDQKWCVQINGIRQR 689 Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 IDQ QS NLY+ + +++ +Y +A G+K+ YY+RS+S T Sbjct: 690 HIDQGQSFNLYITTNYTMRQIMNLYIEACKAGVKSIYYVRSKSLT 734 >gi|237738721|ref|ZP_04569202.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 2_1_31] gi|229423824|gb|EEO38871.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 2_1_31] Length = 755 Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 239/801 (29%), Positives = 389/801 (48%), Gaps = 112/801 (13%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ T+ +E ++A V R L+ + REV +H + Y + F + I+ Sbjct: 65 TAVTMTSFEESDWAYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHM 111 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 V+ L E ++ + +L ++ + RD ++Y G +L +RY + +G E+PQ Sbjct: 112 VELGLYDERLLTYTEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQET 171 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 FM ++M LAL E E E R EFYN LS +TP L N + LSSCF+T + Sbjct: 172 FMAISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAID 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVA Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTLF P E+ +L +LYG EFE YE E+ D IK+ R +SA L++ ++ Sbjct: 352 SWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKDND---IKLKRVLSAKELFKSIMKT 408 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSE 468 Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 CNL S+NL + D+L + AVR LDN ID+ ++++ K N + Sbjct: 469 MGEIHTCNLISLNLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLMY 522 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKG Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFKG 580 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S WDQ +F + R+ N + W+E V+ G+RN AIAP + + Sbjct: 581 SKWDQAIF-------FGKKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTS 633 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + G + S+ P++ +++ N G Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657 Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 IP +K + A+ ++P+ ++ ++ W Q S+ + D K Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWTTQGVSMEMVFDLNKDIKAKD 715 Query: 888 IY---RQAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736 >gi|317014098|gb|ADU81534.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Gambia94/24] Length = 788 Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 193/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 FKD N +P H G++ SSNLCTEI N++ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434 Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%) Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +TAVCNL SINL N + D ++ + VR+LDNVID+N + K K +N +RA Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L I + S E +E D ME IS+HAI S LA+E+G Y F+ S Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGVYKDFENSE 607 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+FPID A E + + W L+++VK GMRN MAIAPT++I+ + Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G +Q+I+P Y+ + + N+SG VV L + W+ Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893 + +A++ID LI++A+ RQKWIDQ QS+N++L + SGK L IY AW Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755 Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916 +GLK+TYYLRS S + EKS L Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778 >gi|315304278|ref|ZP_07874627.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria ivanovii FSL F6-596] gi|313627357|gb|EFR96141.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria ivanovii FSL F6-596] Length = 763 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 248/734 (33%), Positives = 362/734 (49%), Gaps = 107/734 (14%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270 P + AR L KL YKK K + Y Y E G+ + + Sbjct: 82 PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 ++ +L+ + E+D F Y GL +L RY L + R E+PQ ++ +A+ L Sbjct: 134 KNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 ++ KEKR E Y LS+ + +TPTL N+G QLSSCF+ TV D L I+ Sbjct: 193 -MQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQSIYD 251 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553 EV Y ++F Y+ G + + +KI A+ + ++++ Sbjct: 372 EVKAKKGWYLQDF------YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 425 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S + Sbjct: 426 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 485 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + VCNL S+NL + ++L I VR+LDNVID+N + +A +N +R Sbjct: 486 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 542 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +IGLG G+ L L +I + S EA + ADE E I++ AI+AS +LAQE+GAY FKGS Sbjct: 543 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKGS 602 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 603 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 648 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + SIDP Y Y + V+ L +S Y++ Sbjct: 649 IAGSTASIDPIYSAFYYEEKKDYRRPVIAPGL-------------NLSTYPYYEKG---- 691 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891 A+++D + RRQ+ +DQ+ S N Y+ PSG KL ++ Sbjct: 692 -------------AYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 736 Query: 892 AWLMGLKTTYYLRS 905 AW GLKTTYY+RS Sbjct: 737 AWNEGLKTTYYVRS 750 >gi|307637366|gb|ADN79816.1| Ribonucleotide reductase of class Ia/alpha subunit [Helicobacter pylori 908] gi|325995959|gb|ADZ51364.1| Ribonucleotide reductase of class Ia,alpha subunit [Helicobacter pylori 2018] gi|325997553|gb|ADZ49761.1| Ribonucleotide diphosphate reductase alpha subunit [Helicobacter pylori 2017] Length = 788 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 192/451 (42%), Positives = 275/451 (60%), Gaps = 20/451 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + ++ ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 FKD N +P H G++ SSNLCTEI N++ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 179/323 (55%), Gaps = 39/323 (12%) Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +TAVCNL SINL N + D ++ + VR+LDNVID+N + K K +N +RA Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L L I + S E +E D ME IS+HAI S LA+E+G Y F+ S Sbjct: 548 IGLGVMGEAQMLAELQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+FPID A E + + W L+++VK GMRN MAIAPT++I+ + Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G +Q+I+P Y+ + + N+SG VV L + W+ Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893 + +A++ID LI++A+ RQKWIDQ QS+N++L + SGK L IY AW Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755 Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916 +GLK+TYYLRS S + EKS L Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778 >gi|317012491|gb|ADU83099.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Lithuania75] Length = 788 Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 192/451 (42%), Positives = 275/451 (60%), Gaps = 20/451 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 FKD N +P H G++ SSNLCTEI N++ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%) Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +TAVCNL SINL N + D ++ + VR+LDNVID+N + K K +N +RA Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L I + S E +E D ME IS+HAI S LA+E+G Y F+ S Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+FPID A E + + W L+++VK GMRN MAIAPT++I+ + Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G +Q+I+P Y+ + + N+SG VV L + W+ Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893 + +A++ID LI++A+ RQKWIDQ QS+N++L + SGK L IY AW Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755 Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916 +GLK+TYYLRS S + EKS L Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778 >gi|210134885|ref|YP_002301324.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori P12] gi|210132853|gb|ACJ07844.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter pylori P12] Length = 788 Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 192/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 FKD N +P H G++ SSNLCTEI N++ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 126/323 (39%), Positives = 179/323 (55%), Gaps = 39/323 (12%) Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +TAVCNL SINL N + D ++ + VR+LDNVID+N + K K +N +RA Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L I + S E +E D ME IS+HAI S LA+E+G Y F+ S Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+FPID A E + + W L+++VK+ GMRN MAIAPT++I+ + Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKSNGMRNGYLMAIAPTSSISIL 666 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G +Q+I+P Y+ + + N+SG VV L + W+ Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893 + +A++ID LI++A+ RQKWIDQ QS+N++L + SGK L IY AW Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755 Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916 +GLK+TYYLRS S + +KS L Sbjct: 756 KLGLKSTYYLRSESPSIDKKSVL 778 >gi|237742882|ref|ZP_04573363.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 4_1_13] gi|229430530|gb|EEO40742.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 4_1_13] Length = 755 Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 238/806 (29%), Positives = 390/806 (48%), Gaps = 112/806 (13%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199 + + K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ Sbjct: 2 VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59 Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 +LI ++ ++ +E ++A V R L+ + REV +H Y + F + Sbjct: 60 ASLINTAVSMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSK 106 Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 I + V+ L E ++ + +L + + RD ++Y G + +RY + +G E Sbjct: 107 TIRKMVELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYE 166 Query: 316 MPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 +PQ FM ++M LAL E E E R EFYN LS +TP L N H LSSCF Sbjct: 167 LPQETFMAISMMLALNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCF 226 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 +T + D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ N Sbjct: 227 ITAIDDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVN 286 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKR Sbjct: 287 DTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKR 346 Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 V N WTL P E+ +L +LYG EFE YE E ++ IK+ + +SA L++ Sbjct: 347 VKNNEAWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDSN---IKLKKVLSAKELFK 403 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA--- 598 ++ ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 404 SIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTS 463 Query: 599 ----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNL SINL + D+L + AVR LDN ID+ ++++ K Sbjct: 464 IRKSEMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNK 517 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 N +R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY Sbjct: 518 HNLLYRTIGVGAMGLADYLAREYMIY--EESINEINEMFERIALYSIKASALLAKDRGAY 575 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +FKGS WDQG+F + R+ N + W+E V+T G+RN AIAP Sbjct: 576 KAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAP 628 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + + G + S+ P++ +++ N G Sbjct: 629 NTSTSLLMGSTASVTPTFSRFFIEKNQRG------------------------------- 657 Query: 829 GSIGNIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D Sbjct: 658 -------AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKD 710 Query: 883 KKLDFIYR---QAWLMGLKTTYYLRS 905 K IY AW G K+ YY+R+ Sbjct: 711 IKAKDIYDTLITAWKEGCKSVYYIRT 736 >gi|167462364|ref|ZP_02327453.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus larvae subsp. larvae BRL-230010] Length = 729 Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 237/669 (35%), Positives = 336/669 (50%), Gaps = 82/669 (12%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 +++ ERD F Y+GL+ L DRY +G E+PQ FM +AM L + E E + Sbjct: 101 FGREIEPERDKLFNYIGLKTLADRYLAKSYDGEVYELPQERFMIIAMTLMMYEREDHRAD 160 Query: 340 V--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 + E Y LS+ + +TPTL N+G QLSSCF+ V D L I+ + + AML+K Sbjct: 161 LVKEAYWALSNLYMTVATPTLANAGLSFGQLSSCFIDIVDDSLRSIYDSNTDVAMLSKNG 220 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G +R G+ I G G S GVIP+++ N+TAV+V+Q G+RKG++ YL+ WH Sbjct: 221 GGIGVYVGKLRARGSDIKGFKGVSSGVIPWVRQLNNTAVSVDQLGRRKGSIAVYLDVWHK 280 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD 512 D+ FLDL+ N GD+R R HD+ IPDLFM+ V W LF P EV L D Sbjct: 281 DILAFLDLKLNNGDERLRAHDIFPGVCIPDLFMESVRDRGDWYLFDPHEVRRIMGYSLED 340 Query: 513 LYGKE-FEIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 Y +E E ++ + YE D E+ R + A+ + + ++ ETG P++ ++D N Sbjct: 341 FYDEEKGEGSFRQKYEECVDSPELAKVR-VPAIEIMKSIMKSQLETGTPYMFYRDEANRM 399 Query: 571 SPQQHVGVVHSSNLCTEITLNSS-----SEET---------------AVCNLGSINLLAH 610 +P H G+++ +NLCTEI N S EET VCNL SINL Sbjct: 400 NPNGHAGMIYCTNLCTEIMQNMSPTVVVEEETDRDGNIITTKEPGDFVVCNLSSINLTRA 459 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHTHRAIGLGLMGFQSALH 668 Y+ L I VR+LDNVIDIN IE +A +N +RAIGLG G+ L Sbjct: 460 -------YEVLDRLIPIQVRMLDNVIDINADKIEVQQAVVTNRKYRAIGLGTFGWHHLLA 512 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + I + S +A A+E E I++ I AS LA E+G Y +++ S W G + I Sbjct: 513 VRGIQWESEDAATFANELYEKIAYLTIRASCMLAAEKGPYPAYEVSDWSTGDYFIKH--- 569 Query: 729 LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 R L M + W++L V G+RN MA+AP + A I G + IDP + Sbjct: 570 -GYARPGFLEMKKGDLTDWEDLADNVTIYGIRNGYLMAVAPNMSTAKIGGSTDGIDPIFM 628 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + V V +L +W ++ + Sbjct: 629 RTYSEEKSKYKIPVT----VPDLTTSTMW---------------------------LYKS 657 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLR 904 AF ID W I + RQ+ IDQ S NLY+ P+G K L ++ AW GLK+TYYLR Sbjct: 658 AFNIDQTWSIRQNAARQRHIDQGVSFNLYV--PNGVKAKDLLGLHMLAWESGLKSTYYLR 715 Query: 905 SRSATSVEK 913 S + T +E+ Sbjct: 716 S-ATTEIEE 723 >gi|317181991|dbj|BAJ59775.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F57] Length = 788 Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 192/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN++ V +R L L Y K T + EYF E+G Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 R+L FDL +L +K ERDF F YLG++ L+DRY L N + IE+PQ FM Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLHDRYLLKDANNNPIELPQHMFM 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q G Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WTLF Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E DL +LYG++FE Y YE+ D IK + I+A LW+K+L FE G P++ Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 FKD N +P H G++ SSNLCTEI N++ Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%) Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +TAVCNL SINL N + D ++ + VR+LDNVID+N + K K +N +RA Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L I + S E +E D ME IS+HAI S LA+E+G Y F+ S Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +GVFPID A E + + W L+++VK GMRN MAIAPT++I+ + Sbjct: 608 WSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G +Q+I+P Y+ + + N+SG VV L E W+ Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN------------------ 703 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893 + +A++I+ LI++A+ RQKWIDQ QS+N++L + SGK L IY AW Sbjct: 704 --------FYTSAYDINAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755 Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916 +GLK+TYYLRS S + EKS L Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778 >gi|285016982|ref|YP_003374693.1| ribonucleoside-diphosphate reductase alpha subunit protein [Xanthomonas albilineans GPE PC73] gi|283472200|emb|CBA14707.1| probable ribonucleoside-diphosphate reductase alpha subunit protein [Xanthomonas albilineans] Length = 803 Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 248/760 (32%), Positives = 373/760 (49%), Gaps = 106/760 (13%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + LS ++ LI + + ++ P + AR L++L YK+ K ++ Sbjct: 92 ESLSADEMVDYLIREAESRVDIATPEWEYFAARLYLDRL--------YKRASKNRFYDAG 143 Query: 250 CLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 Y Y + GV + + ++ +L + ERD F Y GL +L RY Sbjct: 144 EKYGSYVGLQESLADRGVYSINILKNYSKEELAEAGRMIDPERDKLFAYNGLYLLATRYL 203 Query: 307 LHINGSRI-EMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSG 362 N ++ E+PQ ++ +A+ L E +E+R E Y LS+ + +TPTL N+G Sbjct: 204 ATDNSRKVYELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLSNAG 263 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G S Sbjct: 264 KIGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVKNSSG 323 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P++K N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R R HD+ TA Sbjct: 324 GVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTA 383 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRG 532 +PD+FM+ V + W LF P EV ++ Y ++ F YE E AD Sbjct: 384 VCVPDIFMEAVERRGEWYLFDPYEVKEVKGWYLQDFFDEKRGEGSFRAKYE--EVVADE- 440 Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 ++ RK + A+ ++++++ ETG+P++ ++D N +P +H G+V+SSNLCTEI N Sbjct: 441 --RIGRKVVKAIDMFKRIMVSQLETGNPFMFYRDEVNRMNPNKHQGMVYSSNLCTEILQN 498 Query: 592 SS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLASTIRTAV 629 S + + VCNL S+N L Q D D L IR V Sbjct: 499 MSPTRVIQEMISGDQIVTTKQAGDFVVCNLSSVN-LGRAVTAQPDLLSPDILERLIRVQV 557 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + +A +N +RAIGLG G+ L I + S +A + +D E Sbjct: 558 RMLDNVIDLNDLPVPQATITNQKYRAIGLGTFGWHHLLAQKGIEWNSRQAEDYSDTLYER 617 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I++ I AS+ LAQE+GAY FKGS W G + + W EL Sbjct: 618 INYLTIQASLALAQEKGAYKVFKGSDWQNGEY--------------FSKRGYDSAQWQEL 663 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +V G+RN+ +A+AP + A I G + SIDP Y Y + VV L Sbjct: 664 AAQVSVHGVRNAWMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVVAPGLT-- 721 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + Y++ A+++D + +RRQ+ +DQ Sbjct: 722 -----------VDTYPYYEKG-----------------AYKVDQFASVRQNARRQRHVDQ 753 Query: 870 AQSLNLYLDEPSGKK----LDFIYRQAWLMGLKTTYYLRS 905 + S N Y+ PSG + LD ++ AW GLKTTYY+RS Sbjct: 754 SISFNFYV--PSGIRAGTLLD-LHMTAWKEGLKTTYYVRS 790 >gi|262067227|ref|ZP_06026839.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379060|gb|EFE86578.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 755 Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 237/801 (29%), Positives = 389/801 (48%), Gaps = 112/801 (13%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ T+ +E +++ V R L+ + REV +H + Y + F + I+ Sbjct: 65 TAVTMTSFEESDWSYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHM 111 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 V+ L E ++ + +L ++ + RD ++Y G +L +RY + +G E+PQ Sbjct: 112 VELGLYDERLLTYTEEELNQISQLIDLNRDMVYDYAGANMLVNRYLIKHDGKTYELPQET 171 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 FM ++M LAL E E E R EFYN LS +TP L N + LSSCF+T + Sbjct: 172 FMTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAID 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVA Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTLF P E+ +L +LYG EFE YE E+ D IK+ R +SA L++ ++ Sbjct: 352 SWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKDND---IKLKRVLSAKELFKSIMKT 408 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSE 468 Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 CNL S+NL + D+L + AVR LDN ID+ ++++ K N + Sbjct: 469 MGEIHTCNLISLNLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLMY 522 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKG Sbjct: 523 RTVGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFKG 580 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S WDQ +F + R+ N + W+E V+ G+RN AIAP + + Sbjct: 581 SKWDQAIF-------FGKKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTS 633 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + G + S+ P++ +++ N G Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657 Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 IP +K + A+ ++P+ ++ ++ W Q S+ + D K Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWTTQGVSMEMVFDLNKDIKAKD 715 Query: 888 IYR---QAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 716 IYDTLITAWEEGCKSVYYIRT 736 >gi|110802610|ref|YP_699621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium perfringens SM101] gi|110683111|gb|ABG86481.1| ribonucleoside-diphosphate reductase, alpha chain [Clostridium perfringens SM101] Length = 743 Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 230/732 (31%), Positives = 366/732 (50%), Gaps = 96/732 (13%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP + ++ A+ ++ L EV T + + E ++G+ + + ++ Sbjct: 60 EPRWQEIAAKLYVKNLYEEVRTNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E +KEKR A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506 +L+ WH D+ EFL ++ N GDDR++ HD+ PDLF K +A W + P E Sbjct: 295 AIWLDAWHKDLPEFLQIKTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354 Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 + L D YG+E+E Y YE + DR E +V +S + R ++ ETG P+ Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597 ++D N +P +H G+++SSNLCTEI N S+ E Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDF 469 Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D ++ + T +R +DNVID+N +++ A+ +N +RA+ Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W ELK+ + GMRN A+AP + A + Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S+ +DP +++ + + L Q + W Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720 Query: 896 GLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 721 GVKSIYYVRSKS 732 >gi|168213272|ref|ZP_02638897.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens CPE str. F4969] gi|182625796|ref|ZP_02953563.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens D str. JGS1721] gi|170715231|gb|EDT27413.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens CPE str. F4969] gi|177908952|gb|EDT71439.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens D str. JGS1721] Length = 743 Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 230/734 (31%), Positives = 366/734 (49%), Gaps = 96/734 (13%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP + ++ A+ ++ L EV + + E ++G+ + + ++ Sbjct: 60 EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E +KEKR A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506 +L+ WH D+ EFL +R N GDDR++ HD+ PDLF K +A W + P E Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354 Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 + L D YG+E+E Y YE + DR E +V +S + R ++ ETG P+ Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597 ++D N +P +H G+++SSNLCTEI N S+ E Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDF 469 Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D ++ + T +R +DNVID+N +++ A+ +N +RA+ Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W ELK+ + GMRN A+AP + A + Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S+ +DP +++ + + L Q + W Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720 Query: 896 GLKTTYYLRSRSAT 909 G+K+ YY+RS+S + Sbjct: 721 GVKSIYYVRSKSLS 734 >gi|18311343|ref|NP_563277.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium perfringens str. 13] gi|18146027|dbj|BAB82067.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium perfringens str. 13] Length = 743 Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 230/732 (31%), Positives = 365/732 (49%), Gaps = 96/732 (13%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP + ++ A+ ++ L EV + + E ++G+ + + ++ Sbjct: 60 EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E +KEKR A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506 +L+ WH D+ EFL +R N GDDR++ HD+ PDLF K +A W + P E Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGICYPDLFWKLAENDIDANWYMMCPHE 354 Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 + L D YG+E+E Y YE + DR E +V +S + R ++ ETG P+ Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597 ++D N +P +H G+++SSNLCTEI N S+ E Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDF 469 Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D ++ + T +R +DNVID+N +++ A+ +N +RA+ Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W ELK+ + GMRN A+AP + A + Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S+ +DP +++ + + L Q + W Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720 Query: 896 GLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 721 GVKSIYYVRSKS 732 >gi|168210335|ref|ZP_02635960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens B str. ATCC 3626] gi|170711563|gb|EDT23745.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens B str. ATCC 3626] Length = 743 Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 230/734 (31%), Positives = 366/734 (49%), Gaps = 96/734 (13%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP + ++ A+ ++ L EV + + E ++G+ + + ++ Sbjct: 60 EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E +KEKR A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDE 506 +L+ WH D+ EFL +R N GDDR++ HD+ PDLF K + A W + P E Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIEANWYMMCPHE 354 Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 + L D YG+E+E Y YE + DR E +V +S + R ++ ETG P+ Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597 ++D N +P +H G+++SSNLCTEI N S+ E Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDF 469 Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D ++ + T +R +DNVID+N +++ A+ +N +RA+ Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W ELK+ + GMRN A+AP + A + Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S+ +DP +++ + + L Q + W Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720 Query: 896 GLKTTYYLRSRSAT 909 G+K+ YY+RS+S + Sbjct: 721 GVKSIYYVRSKSLS 734 >gi|110800461|ref|YP_697051.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium perfringens ATCC 13124] gi|168216674|ref|ZP_02642299.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens NCTC 8239] gi|110675108|gb|ABG84095.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens ATCC 13124] gi|182381125|gb|EDT78604.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens NCTC 8239] Length = 743 Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 230/732 (31%), Positives = 365/732 (49%), Gaps = 96/732 (13%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP + ++ A+ ++ L EV + + E ++G+ + + ++ Sbjct: 60 EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E +KEKR A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506 +L+ WH D+ EFL +R N GDDR++ HD+ PDLF K +A W + P E Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354 Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 + L D YG+E+E Y YE + DR E +V +S + R ++ ETG P+ Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597 ++D N +P +H G+++SSNLCTEI N S+ E Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDF 469 Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D ++ + T +R +DNVID+N +++ A+ +N +RA+ Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W ELK+ + GMRN A+AP + A + Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S+ +DP +++ + + L Q + W Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720 Query: 896 GLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 721 GVKSIYYVRSKS 732 >gi|168205190|ref|ZP_02631195.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens E str. JGS1987] gi|170663300|gb|EDT15983.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens E str. JGS1987] Length = 743 Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 230/732 (31%), Positives = 365/732 (49%), Gaps = 96/732 (13%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP + ++ A+ ++ L EV + + E ++G+ + + ++ Sbjct: 60 EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E +KEKR A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506 +L+ WH D+ EFL +R N GDDR++ HD+ PDLF K +A W + P E Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354 Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 + L D YG+E+E Y YE + DR E +V +S + R ++ ETG P+ Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597 ++D N +P +H G+++SSNLCTEI N S+ E Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSTMEIEQTEIKDENGDVVVIEKTKPGDF 469 Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D ++ + T +R +DNVID+N +++ A+ +N +RA+ Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W ELK+ + GMRN A+AP + A + Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S+ +DP +++ + + L Q + W Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720 Query: 896 GLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 721 GVKSIYYVRSKS 732 >gi|225386406|ref|ZP_03756170.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme DSM 15981] gi|225047487|gb|EEG57733.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme DSM 15981] Length = 761 Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 249/767 (32%), Positives = 381/767 (49%), Gaps = 104/767 (13%) Query: 181 VLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYK 238 +LS +++ G+ ++L +LI S+ L +E P + + AR + E+ Sbjct: 48 ILSNKFRSFRKPGMKRTELYDSLIQSAAELTSREAPRWEFIAARIRYSQFGEEL------ 101 Query: 239 KPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 ++ + Y + Y R EG+ + E + ++ L ER+ F Y Sbjct: 102 -EERLAGLGISGFYDKLVYLTR---EGLYGDYILEHYTEAEIREAETFLDPERNKLFTYS 157 Query: 297 GLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFM 352 GL +L RY + N R +E PQ ++ +A+ LA++E + A FY++LS+ Sbjct: 158 GLDLLIKRYVIQ-NHKRQPLETPQEMYLGIALHLAMEEKPDCRMAWVRRFYDMLSNMQVT 216 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTL N+ QLSSCF+ TVPD L GI+ ++ A ++K+ GG+G + VR G Sbjct: 217 MATPTLSNARKPFHQLSSCFIDTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRATGG 276 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G + GVI ++K+ NDTAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDD Sbjct: 277 SIRGFEGAAGGVIRWVKLVNDTAVAVDQLGMRQGAVAVYLDAWHKDLPEFLQLRTNNGDD 336 Query: 473 RRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENY 525 R + HD+ A PDLF K + N W L P E+ L D +G+E+E Y Sbjct: 337 RMKAHDVFPAICYPDLFWKMAKEDLNQPWHLMCPHEILQVKGYSLEDSFGEEWERRY--L 394 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + AD G I R ++ + R +L ETG P+ +D N +P H G+++ SNLC Sbjct: 395 DCVAD-GRISK-RTVALKDIVRLILRSQVETGTPFTFNRDVVNRANPNGHKGMIYCSNLC 452 Query: 586 TEITLNSSSEET-----------------------AVCNLGSINLLAHFAN-NQFDYDKL 621 TEI N + ET VCNL S+ L N + D + Sbjct: 453 TEIAQNMAGIETVSTEIREENGDTVVVTTTKAGEFVVCNLASLCL----GNIDVTDEAAV 508 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + +AVR LDNVI +N + + AK +N +R+IGLG+ G+ L I + S E + Sbjct: 509 RAVTASAVRALDNVIGLNFYPLPYAKITNRRYRSIGLGVSGYHHMLAKNGIAWESEEHLR 568 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 ADE E I+F A+ AS +LA E+G+Y F+GS W+ G + D G E Sbjct: 569 FADEVFERINFAAVEASSDLAAEKGSYDYFEGSDWETGAY-FDKRGYTGE---------- 617 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 WD L+++V GMRN+ +A+APT++ + +CG + +DP + +++ Sbjct: 618 ---KWDGLRRKVARQGMRNAYLVAVAPTSSTSILCGTTAGVDPVMKRYFLEEKKHAILPR 674 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 V EL R W ++ A +D W + +A Sbjct: 675 V----APELTPRTYW---------------------------LYKEAHLVDQTWSVRAAG 703 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 RQ+ IDQAQS+NLY+ +E + +++ +Y QAW G+KT YY+RS++ Sbjct: 704 ARQRHIDQAQSVNLYITNEYTMRQVLNLYIQAWEEGVKTIYYVRSKA 750 >gi|19703450|ref|NP_603012.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713528|gb|AAL94311.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 755 Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 238/801 (29%), Positives = 388/801 (48%), Gaps = 112/801 (13%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ T+ +E ++A V R L+ + REV +H Y + F + I + Sbjct: 65 TAVTMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSKTIRKM 111 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + L E ++ + +L +A + RD ++Y G +L +RY + +G E+PQ Sbjct: 112 TELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMLVNRYLIKYDGKTYELPQET 171 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 FM ++M LAL E E E R EFYN LS +TP L N LSSCF+T + Sbjct: 172 FMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAID 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVA Sbjct: 232 DNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P E+ +L +LYG EFE YE E + IK+ + +SA L++ ++ Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMKT 408 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSE 468 Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 CNL SINL + ++L + AVR LDN ID+ ++++ K N + Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLLY 522 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKG Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASTLLAKDRGAYKAFKG 580 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S WDQG+F + R+ N + W+E+ V+T G+RN AIAP + + Sbjct: 581 SKWDQGIF-------YGKKREWYDTNSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTS 633 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + G + S+ P++ +++ N G Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657 Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D K Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715 Query: 888 IY---RQAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736 >gi|169347148|ref|ZP_02866090.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens C str. JGS1495] gi|169296831|gb|EDS78960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens C str. JGS1495] Length = 743 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 230/734 (31%), Positives = 365/734 (49%), Gaps = 96/734 (13%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP + ++ A+ ++ L EV + + E ++G+ + + ++ Sbjct: 60 EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175 Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E +KEKR A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506 +L+ WH D+ EFL +R N GDDR++ HD+ PDLF K +A W + P E Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354 Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 + L D YG+E+E Y YE + DR E +V +S + R ++ ETG P+ Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597 ++D N +P +H G+++SSNLCTEI N S E Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSVMEIEQTEIKDENGDVVVIEKTKPGDF 469 Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D ++ + T +R +DNVID+N +++ A+ +N +RA+ Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W ELK+ + GMRN A+AP + A + Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S+ +DP +++ + + L Q + W Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720 Query: 896 GLKTTYYLRSRSAT 909 G+K+ YY+RS+S + Sbjct: 721 GVKSIYYVRSKSLS 734 >gi|296329017|ref|ZP_06871524.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153910|gb|EFG94721.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 755 Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 237/801 (29%), Positives = 388/801 (48%), Gaps = 112/801 (13%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ T+ +E ++A V R L+ + REV +H Y + F + I + Sbjct: 65 TAVTMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSKTIRKM 111 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + L E ++ + +L +A + RD ++Y G + +RY + +G E+PQ Sbjct: 112 TELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQET 171 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 FM ++M LAL E E E R EFYN LS +TP L N LSSCF+T + Sbjct: 172 FMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAID 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVA Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P E+ +L +LYG EFE YE E + IK+ + +SA L++ ++ Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMKT 408 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSE 468 Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 CNL SINL + ++L + AVR LDN ID+ ++++ K N + Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKHVALAVRALDNTIDLTVTPLKESNKHNLLY 522 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKG Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGAYKAFKG 580 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S WDQG+F + R+ +N + W+E+ V+T G+RN AIAP + + Sbjct: 581 SKWDQGIF-------YGKKREWYDINSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTS 633 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + G + S+ P++ +++ N G Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657 Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D K Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715 Query: 888 IY---RQAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736 >gi|294784668|ref|ZP_06749956.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_27] gi|294486382|gb|EFG33744.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_27] Length = 755 Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 240/801 (29%), Positives = 384/801 (47%), Gaps = 102/801 (12%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199 + + K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ Sbjct: 2 VMERRKVINRDNIVEDLNIEKIREKLLRACEGLE--VNMVELESNIDSIYEENITTQKIQ 59 Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPE 254 +LI ++ + +E ++A V R L+ + REV + Y K ++ LY E Sbjct: 60 ASLINTAVAMTTFEESDWAYVAGRLLMMEAEREVFHSRGFSYGNFPKTIRKMIELGLYDE 119 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 Y EE +L +A + RD ++Y G + +RY + +G Sbjct: 120 RLLSYTEE--------------ELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTY 165 Query: 315 EMPQAFFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E+PQ FM ++M LAL E E E R +FYN LS +TP L N H LSSC Sbjct: 166 ELPQETFMAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSC 225 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 F+T + D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ Sbjct: 226 FITAIDDNIESIFYIIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRII 285 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMK Sbjct: 286 NDTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMK 345 Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 RV N WTL P E+ +L +LYG EFE YE E + IK+ + +SA L+ Sbjct: 346 RVKNNEPWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELF 402 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-- 598 + ++ ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 403 KSIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNT 462 Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNL SINL + D+L + AVR LDN ID+ ++++ Sbjct: 463 SIRKSEMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESN 516 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K N +R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGA Sbjct: 517 KHNLLYRTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGA 574 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y +FKGS WDQG+F + R+ N + W+E V+T G+RN AIA Sbjct: 575 YKAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIA 627 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + + G + S+ P++ +++ N G V LK R W Sbjct: 628 PNTSTSLLMGSTASVTPTFSRFFIEKNQRGAIPRT----VKHLKDR-AW----------- 671 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 + ++P+ ++ ++ W+ Q S+ + D K Sbjct: 672 ----------------FYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715 Query: 888 IY---RQAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736 >gi|256027985|ref|ZP_05441819.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp. D11] gi|289765930|ref|ZP_06525308.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D11] gi|289717485|gb|EFD81497.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D11] Length = 755 Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 240/801 (29%), Positives = 385/801 (48%), Gaps = 102/801 (12%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199 + + K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ Sbjct: 2 VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59 Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPE 254 +LI ++ ++ +E +++ V R L+ + REV + Y K ++ LY + Sbjct: 60 ASLINTAVSMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYDNFPKTIRKMVELGLYDK 119 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 Y EE LH+ D+ RD ++Y G + +RY + +G Sbjct: 120 RLLSYTEEE-----LHQITQLIDI---------NRDMVYDYAGAHMFVNRYLIKHDGKTY 165 Query: 315 EMPQAFFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E+PQ FM ++M LAL E E E R EFYN LS +TP L N H LSSC Sbjct: 166 ELPQETFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSC 225 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 F+T + D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ Sbjct: 226 FITAIDDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRII 285 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMK Sbjct: 286 NDTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMK 345 Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 RV N WTL P E+ +L +LYG EFE YE E + IK+ + +SA L+ Sbjct: 346 RVKNNETWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELF 402 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-- 598 + ++ ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 403 KSIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNT 462 Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNL SINL + ++L + AVR LDN ID+ ++++ Sbjct: 463 SIRKSEMGEIHTCNLISINL------TELTSEELEKYVALAVRALDNTIDLTVTPLKESN 516 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K N +R IG+G MG L ++ Y E++ DE E I+ ++I AS LA++RGA Sbjct: 517 KHNLLYRTIGVGAMGLADYLAREYMIY--EESINEIDELFERIALYSIKASALLAKDRGA 574 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y +FKGS WDQG+F + R+ N + W+E V+T G+RN AIA Sbjct: 575 YKAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIA 627 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + + G + S+ P++ +++ N G V LK R W Sbjct: 628 PNTSTSLLMGSTASVTPTFSRFFIEKNQRGAIPRT----VKHLKDR-AW----------- 671 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 + ++P+ ++ ++ W+ Q S+ + D K Sbjct: 672 ----------------FYPEFKNVNPISYVKVMAKIGSWVTQGVSMEMVFDLNKDIKAKN 715 Query: 888 IY---RQAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 716 IYDALMTAWEEGCKSVYYIRT 736 >gi|256846216|ref|ZP_05551674.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_36A2] gi|256719775|gb|EEU33330.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_36A2] Length = 755 Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 236/806 (29%), Positives = 388/806 (48%), Gaps = 112/806 (13%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199 + + K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ Sbjct: 2 VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59 Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 +LI ++ ++ +E ++A V R L+ + REV +H Y + F + Sbjct: 60 ASLINTAVSMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSK 106 Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 I + V+ L E ++ + +L + + RD ++Y G + +RY + +G E Sbjct: 107 TIRKMVELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYE 166 Query: 316 MPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 +PQ FM ++M L L E E E R EFYN LS +TP L N H LSSCF Sbjct: 167 LPQETFMAISMMLVLNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCF 226 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 +T + D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ N Sbjct: 227 ITAIDDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVN 286 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKR Sbjct: 287 DTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKR 346 Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 V N WTL P E+ +L +LYG EFE YE E ++ IK+ + +SA L++ Sbjct: 347 VKNNEAWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDSN---IKLKKVLSAKELFK 403 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLN---------- 591 ++ ETG P+I FKD N + H+G++ + NLC E T+N Sbjct: 404 SIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEKEDGNTS 463 Query: 592 ---SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 S E CNL SINL + D+L + AVR LDN ID+ ++++ K Sbjct: 464 IRKSEMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNK 517 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 N +R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY Sbjct: 518 HNLLYRTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGAY 575 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +FKGS WDQG+F + R+ N + W+E V+T G+RN AIAP Sbjct: 576 KAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAP 628 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + + G + S+ P++ +++ N G Sbjct: 629 NTSTSLLMGATASVTPTFSRFFIEKNQRG------------------------------- 657 Query: 829 GSIGNIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D Sbjct: 658 -------AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKD 710 Query: 883 KKLDFIYR---QAWLMGLKTTYYLRS 905 K IY AW K+ YY+R+ Sbjct: 711 IKAKDIYDTLITAWEESCKSVYYIRT 736 >gi|255658864|ref|ZP_05404273.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella multacida DSM 20544] gi|260849269|gb|EEX69276.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella multacida DSM 20544] Length = 755 Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 232/694 (33%), Positives = 354/694 (51%), Gaps = 105/694 (15%) Query: 258 RYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE 315 RY+ +G+ + E + +L A + ER+ + Y GL +L RY +H + G +E Sbjct: 112 RYLTAKGLYGSYILEHYTERELSAAARFMAEERNHLYTYAGLDLLLSRYVIHTHHGVALE 171 Query: 316 MPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ ++ +A+ LA+ E + FY++LS +TPTL N+ + QLSSCF+ Sbjct: 172 SPQEMYLGIALHLAMLELPAVRMDWVRRFYDMLSLQQVTMATPTLANARKPYHQLSSCFI 231 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD L GI+ +L A ++K+ GG+G + VR GA I G G + GVI ++++ ND Sbjct: 232 DTVPDSLEGIYRSLDSFAKVSKWGGGMGLYFGKVRATGAAIRGFEGAAGGVIRWIRLVND 291 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K Sbjct: 292 TAVAVDQLGVRQGACAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKLA 351 Query: 494 TQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVA 544 ++ A W L P E+ L D +G+E+E Y E + D+ R IS Sbjct: 352 KEDLDAPWFLMDPHEIEMVMGYALEDFWGEEWEKRYRACVAEPRIDK------RVISVKE 405 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------ 598 + R +L + ETG P+ ++D N +P G+++ SNLCTEI N S E Sbjct: 406 IVRLILKSVVETGTPFAFYRDTVNRLNPNPQAGMIYCSNLCTEIAQNMSPVEAVSTEIRT 465 Query: 599 -----------------VCNLGSINLLAHFANNQFD---YDKLASTIRTAVRVLDNVIDI 638 VCNL S+NL + D +++L + +RTAVR LDNVID+ Sbjct: 466 KDGDTVVQVTTRPGDFVVCNLASLNL------GRIDVTSHEELRTVVRTAVRALDNVIDL 519 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + AK +N +R+IGLG+ G+ L I + S E + D+ I++ AI AS Sbjct: 520 NEAPLAYAKLTNAKYRSIGLGVSGYHHMLAKNAIRWESEEHLAFVDDVFARINYAAIEAS 579 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 +LA E+G Y F GS W G + G ++E W +L +V+ GM Sbjct: 580 SDLAAEKGTYGCFAGSDWQTGAY-FKKRGYMSEA-------------WQKLAAKVRAQGM 625 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN+ +A+APT++ + + G + +DP ++ F + E K Sbjct: 626 RNAYLLAVAPTSSTSILVGTTAGVDP----------------IMKRFFLEEKK------- 662 Query: 819 AMISDLKYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 G+I + RI DL + +A +D W + +A RQ+ IDQAQS+N Sbjct: 663 ----------GAI--LPRIAPDLSMKTYWYYKSAHTVDQNWSVRAAGVRQRHIDQAQSVN 710 Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ ++ + +++ +Y +A+ G+KT YY+RS+S Sbjct: 711 LYITNDFTFRQVLALYIRAYEEGVKTIYYVRSKS 744 >gi|237743585|ref|ZP_04574066.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 7_1] gi|229432616|gb|EEO42828.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 7_1] Length = 755 Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 240/802 (29%), Positives = 383/802 (47%), Gaps = 114/802 (14%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPEYFCRY 259 ++ ++ +E +++ V R L+ + REV + Y K + LY E Y Sbjct: 65 TAVSMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYGDFSKTIRKMTELGLYDERLLSY 124 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 EE LH+ D+ RD ++Y G + +RY + +G E+PQ Sbjct: 125 TEEE-----LHQITQLIDI---------NRDMVYDYAGAHMFVNRYLIKYDGKTYELPQE 170 Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 FM ++M LAL E E E R EFYN LS +TP L N H LSSCF+T + Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITEM 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAV Sbjct: 231 DDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350 Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 WTL P E+ +L +LYG EFE YE E + IK+ + +SA L++ ++ Sbjct: 351 ESWTLLDPYEIRKKYGVELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMK 407 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKS 467 Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNL SINL + ++L + AVR LDN ID+ ++++ K N Sbjct: 468 EMGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLL 521 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R IG+G MG L ++ Y E++ DE E I+ ++I AS LA++RGAY +FK Sbjct: 522 YRTIGVGAMGLADYLAREYMIY--EESINEIDELFERIALYSIKASALLAKDRGAYKAFK 579 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS WDQG+F + R+ N + W+E V+T G+RN AIAP + Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + G + S+ P++ +++ N G Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRG----------------------------------- 657 Query: 833 NIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D K Sbjct: 658 ---AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAK 714 Query: 887 FIY---RQAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 715 DIYDTLMTAWEEGCKSIYYIRT 736 >gi|229916486|ref|YP_002885132.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium sp. AT1b] gi|229467915|gb|ACQ69687.1| ribonucleoside-diphosphate reductase, alpha subunit [Exiguobacterium sp. AT1b] Length = 755 Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 245/748 (32%), Positives = 368/748 (49%), Gaps = 114/748 (15%) Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L +EP++ V L +L Y + + +E Y ++ + +E R+ Sbjct: 69 LKAEEPDWTFVATEMYLNRL--------YLEAARNRGYEASMRYGNFY-QLVETLTSKRI 119 Query: 269 LHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323 +++D D+ +L + RD F Y+GL+ L DRY + + E+PQ FM Sbjct: 120 FTSALLDTYSKEDMDHLETLIDPSRDRLFTYIGLRTLSDRYLGRDHVKNLYELPQERFMV 179 Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +AM L KE T + K E Y LS+ + +TPTL N+G + QLSSCF+ TV D L Sbjct: 180 IAMTLMQKEDETTRLKLVEEAYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLR 239 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ + + A L+K GG+G +R G+ I G G S G +P++K N+TAV+V+Q Sbjct: 240 GIYDSNTDVATLSKGGGGIGVYLGKIRSRGSDIKGFKGVSSGALPWMKQLNNTAVSVDQL 299 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+G++ YL+ WH D+ EFLD + N GD+R RTHD+ T +PDLFM+ V W L Sbjct: 300 GMRQGSIAVYLDIWHKDIFEFLDAKLNNGDERLRTHDLFTGVCLPDLFMRTVEARGDWHL 359 Query: 502 FSPDEVS-----DLHDLY-----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 F P E+ L D + G F E Y + E+ + A+ L ++ + Sbjct: 360 FDPHEIRTVMGYSLEDYFDESENGGSFT---EKYMECVNTPELSRV-TVPAIDLVKRYMR 415 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595 ETG P++ F+D N +P +H G+++SSNLC+EI N S+ Sbjct: 416 SQLETGTPYMFFRDAVNRANPNKHAGMIYSSNLCSEIAQNMSATTIEEEYTQDGKIVITK 475 Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + VCNL SI L D L I +R+LDNVID+N + +A +N Sbjct: 476 TPGDFVVCNLSSIAL-----ARAVKADVLERLIPIQMRMLDNVIDLNTIEVPQAMITNQK 530 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RA+GLG G+ L L I + S +AV+ A++ E I++ I AS+ELA+E+GA+ F+ Sbjct: 531 YRAVGLGTFGWHHLLALEGIRWESVDAVQYAEKLYEKIAYLTIQASMELAKEKGAFGVFE 590 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMAIAP 768 GS W G E R R L WD L + V G+RN+ MA+AP Sbjct: 591 GSEWHTG---------------EYFKRRNYRSHDDLDWDGLAEAVHQNGVRNAYMMAVAP 635 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 ++ A I G + SIDP Y+ +Y + + V Sbjct: 636 NSSTAIIAGSTASIDPVYKKVYSEEKKNYKIPVT-------------------------- 669 Query: 829 GSIGNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 +PD D + +AFEID +W I + RQ+ IDQA S NLY+ ++ + Sbjct: 670 --------VPDLTPDTNWFYKSAFEIDQLWSIRQNAARQRHIDQAISFNLYVKNDVKATE 721 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVE 912 L ++ +AW +G+K+ YY RS T+VE Sbjct: 722 LLAMHLEAWSLGMKSIYYTRS---TTVE 746 >gi|160937687|ref|ZP_02085047.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC BAA-613] gi|158439332|gb|EDP17084.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC BAA-613] Length = 748 Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 256/812 (31%), Positives = 394/812 (48%), Gaps = 127/812 (15%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYD-GLSESDLETALIFS 205 M D I + K LE +EE Q + L E Y++ G+ ++ ALI S Sbjct: 1 MADTKVEIDLDYKGLEQCLEEIGRDFQGEGYGLDRLLERYRSFRKPGMGPAEGMEALIRS 60 Query: 206 SRTLIEKE-PNYAKVTARF--------LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 + L KE P + AR + E+L+ + +Y+K T Q LY +Y Sbjct: 61 AAELTSKETPLWEFAAARLRYCGFACEVEEQLKGLGIKGLYEKISYLTE---QGLYGDYI 117 Query: 257 CRY-----IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 ++ IEE E +D ER+ F Y GL +L RY + + Sbjct: 118 LKHYSREEIEEA-------EGFLDD-----------ERNKLFTYAGLDLLLKRYVIQDHS 159 Query: 312 SR-IEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +E PQ ++ +++ LA+KE++ + + FY++LS +TPTL N+ + QL Sbjct: 160 HHPLETPQEMYLGISLHLAMKESKDCRMQWVRRFYDMLSRMQVTMATPTLSNARKPYHQL 219 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF+ TVPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++ Sbjct: 220 SSCFIDTVPDSLEGIYRSVDNFAQVSKFGGGMGLYFGKVRATGSRIRGFEGAAGGVIRWI 279 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ A PDL Sbjct: 280 KLVNDTAVAVDQLGMRQGAAAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCFPDL 339 Query: 489 FMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQAD-RGEIKVFRKI 540 F K +N W L P E+ L D YG+ +E ER D G+ ++ ++ Sbjct: 340 FWKMAEENLDQDWHLMCPHEIRTVKGYCLEDCYGELWE------ERYLDCVGDDRISKRT 393 Query: 541 SAVA-LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597 + + R ++ ETG P+I +D N +P H G+++ SNLCTEI N S E+ Sbjct: 394 VLLKDVVRLIIKSAVETGTPFIFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSPIESVS 453 Query: 598 ---------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 VCNL S+ L A + D D++ +AVR LDNVI Sbjct: 454 TQVLEVNGETAVVQTTRPGDFVVCNLASLCLGAIDVD---DPDEVEYIAASAVRALDNVI 510 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + + A +N +R IGLG+ G+ L I + S E + AD+ E I + A+ Sbjct: 511 DLNFYPLAYAGITNQNYRGIGLGVSGYHHMLAKHGIRWESEEHLVFADQVFERIHYAAVR 570 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA E+G Y F+GS W G + + GL++ W EL ++V Sbjct: 571 ASANLAAEKGCYRYFEGSEWQTGAY-FEKRGLVSR-------------EWKELAEQVAEH 616 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GMRN+ +A+APT++ + + G + +DP + Y++ + V +L R W Sbjct: 617 GMRNAYLLAVAPTSSTSILSGTTAGLDPVMKRFYLEEKKNAILPRV----APDLTPRTFW 672 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ + + +D W + +A RQ+ IDQAQS+NLY Sbjct: 673 ---------------------------LYKSGYTMDQTWTVRAAGVRQRHIDQAQSVNLY 705 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + ++ + ++L +Y AW G+KT YY+RS+S Sbjct: 706 ITNDYTMRQLLNLYILAWESGVKTLYYVRSKS 737 >gi|34763896|ref|ZP_00144798.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886330|gb|EAA23603.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 755 Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 237/802 (29%), Positives = 382/802 (47%), Gaps = 114/802 (14%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACEGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKK-PQKATHHEMQCLYPEYFCRY 259 ++ + +E +++ V R L+ + REV + Y P+ LY E Y Sbjct: 65 TAVAMTTFEESDWSYVAGRLLMMEAEREVFHSRGFSYGNFPKTIRKMTELGLYDERLLSY 124 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 EE +L +A + RD ++Y G + +RY + +G E+PQ Sbjct: 125 TEE--------------ELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQE 170 Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 FM ++M LAL E E E R +FYN LS +TP L N H LSSCF+T + Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAV Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350 Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 WTL P E+ +L +LYG EFE YE E + IK+ + +SA L++ ++ Sbjct: 351 ETWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMK 407 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEENGNTSIRKS 467 Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNL SINL + D+L + AVR LDN ID+ ++++ K N Sbjct: 468 EMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLL 521 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R +G+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FK Sbjct: 522 YRTVGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGAYKAFK 579 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS WDQG+F + R+ N + W+E V+T G+RN AIAP + Sbjct: 580 GSKWDQGIF-------YGKKREWYNTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + G + S+ P++ +++ N G Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRG----------------------------------- 657 Query: 833 NIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D K Sbjct: 658 ---AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAK 714 Query: 887 FIY---RQAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 715 DIYDTLMTAWEEGCKSVYYIRT 736 >gi|254303615|ref|ZP_04970973.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323807|gb|EDK89057.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 755 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 236/801 (29%), Positives = 386/801 (48%), Gaps = 112/801 (13%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACEGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ + +E +++ V R L+ + REV +H Y + F + I + Sbjct: 65 TAVAMTTFEESDWSYVAGRLLMMEAEREV------------YHSRGFSYGD-FSKTIRKM 111 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 V+ L E ++ + +L +A + RD ++Y G + +RY + +G E+PQ Sbjct: 112 VELGLYDERLLSYTEEELNQIAQLIDVNRDMVYDYAGANMFVNRYLIKYDGKTYELPQET 171 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 FM ++M LAL E E R EFYN LS +TP L N H LSSCF+T + Sbjct: 172 FMAISMMLALNEKAGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAID 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVA Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P E+ +L +LYG EFE YE E + IK+ + +SA L++ ++ Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMKT 408 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEEGNTSIRRSE 468 Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 CNL SINL + ++L + AVR LDN ID+ ++++ K N + Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKHVALAVRALDNTIDLTVTPLKESNKHNLLY 522 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKG Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFKG 580 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 581 SKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTS 633 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + G + S+ P++ +++ N G Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657 Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D K Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715 Query: 888 IYR---QAWLMGLKTTYYLRS 905 IY AW G K+ YY+R+ Sbjct: 716 IYDTLITAWEEGCKSVYYIRT 736 >gi|261404532|ref|YP_003240773.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus sp. Y412MC10] gi|261280995|gb|ACX62966.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. Y412MC10] Length = 777 Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 250/804 (31%), Positives = 390/804 (48%), Gaps = 97/804 (12%) Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEKE 213 ++F+ RL + + GL + + +L + + ++ ++ +A S+ L+ KE Sbjct: 13 LAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMSALELVTKE 72 Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 PN+ AR L L ++ T + KA E + +++G+ L S Sbjct: 73 EPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGIYREDLLTS 129 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 + L + RD F+Y+GL L +RY + +G +E+PQ +M +AM L Sbjct: 130 YTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMVIAMFLMHN 189 Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388 E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L GIF + Sbjct: 190 EPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 249 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q G RKGA+ Sbjct: 250 DIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 309 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W+LF P EV Sbjct: 310 AVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWSLFCPHEVK 369 Query: 509 DL---HDLYGKEFEIAYENYERQADRGEIKVFRK---------------ISAVALWRKML 550 + D G+ + + Y+ GE FR+ + A+ + ++++ Sbjct: 370 KIMGWKDENGRPLGLE-DFYDHTQGEGE---FRQKYAEAVANPLLPRITVQAIDIMKRIM 425 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET-------- 597 ETG P++ ++D N +P G+++SSNLCTEI N S EE Sbjct: 426 KSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKDGQTR 485 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL SI+L L + VR+LDNVIDIN + +A+ Sbjct: 486 IVISKIPGDFVVCNLNSIHLARAVPAG-----VLERLVPIQVRMLDNVIDINNIEVLQAQ 540 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RA+GLG G L L I + S EAV D E I++ + +S+ELA+E+G Sbjct: 541 YTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAKEKGH 600 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y FKGS W+ G + E + W EL++ V+ G+RN+ AIA Sbjct: 601 YPKFKGSDWESGEY----FTFRGYTDGEHEGKFVTTEQWRELQQEVQANGVRNAWLFAIA 656 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + I G + SIDP Y+ L + + + V N +L ++ +W Sbjct: 657 PNGSTSIIAGSTASIDPLYELLSYEEKTT--YKVANP--APDLSEKTIW----------- 701 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 + TAF ID W I+ A+ RQ+ +DQAQS NLY+ P + +F Sbjct: 702 ----------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYV-RPDIRASEF 744 Query: 888 --IYRQAWLMGLKTTYYLRSRSAT 909 ++ AW G+K+TYY+RSR+ T Sbjct: 745 LELHLHAWKAGIKSTYYVRSRALT 768 >gi|260497962|ref|ZP_05816078.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_33] gi|260196470|gb|EEW94001.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_33] Length = 755 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 239/807 (29%), Positives = 385/807 (47%), Gaps = 114/807 (14%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199 + + K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ Sbjct: 2 VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59 Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPE 254 +LI ++ ++ +E +++ V R L+ + REV + Y K ++ LY E Sbjct: 60 ASLINTAVSMTTFEESDWSYVAGRLLMMEAEREVFHSRGFSYGDFPKTIRKMVELGLYDE 119 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 Y EE LH+ D+ RD ++Y G + +RY + +G Sbjct: 120 RLLSYTEEE-----LHQITQLIDI---------NRDMVYDYAGAHMFVNRYLIKHDGKTY 165 Query: 315 EMPQAFFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E+PQ FM ++M LAL E E E R EFYN LS +TP L N H LSSC Sbjct: 166 ELPQETFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSC 225 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 F+T + D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ Sbjct: 226 FITAIDDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRII 285 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMK Sbjct: 286 NDTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMK 345 Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 RV N WTL E+ +L +LYG EFE YE E + IK+ + +SA L+ Sbjct: 346 RVKNNETWTLLDSYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELF 402 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-- 598 + ++ ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 403 KSIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNT 462 Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNL SINL + ++L + AVR LDN ID+ ++++ Sbjct: 463 SIRKSEMGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESN 516 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K N +R IG+G MG L ++ Y E++ DE E I+ ++I AS LA++RGA Sbjct: 517 KHNLLYRTIGVGAMGLADYLAREYMIY--EESINEIDELFERIALYSIKASALLAKDRGA 574 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y +FKGS WDQG+F + R+ N + W+E V+T G+RN AIA Sbjct: 575 YKAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIA 627 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + + G + S+ P++ +++ N G Sbjct: 628 PNTSTSLLMGSTASVTPTFSRFFIEKNQRG------------------------------ 657 Query: 828 DGSIGNIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 IP +K + A+ ++P+ ++ ++ W+ Q S+ + D Sbjct: 658 --------AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNK 709 Query: 882 GKKLDFIY---RQAWLMGLKTTYYLRS 905 K IY AW G K+ YY+R+ Sbjct: 710 DIKAKDIYDALMTAWEEGCKSVYYIRT 736 >gi|297582632|ref|YP_003698412.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus selenitireducens MLS10] gi|297141089|gb|ADH97846.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus selenitireducens MLS10] Length = 735 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 250/757 (33%), Positives = 368/757 (48%), Gaps = 118/757 (15%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP++ A E L Y+ K H Y E F I EGV+ L Sbjct: 33 EPHWTYKAAALFAEDL--------YESAAKTRHLNTGEAY-EDFPGLIFEGVRLGLYDNR 83 Query: 273 MMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMG 327 + ++ +L A+ L ++D F Y GL +L DRY +G E+PQ F+ +A+ Sbjct: 84 LTEYYSPAELDEAASMLNPDQDRLFTYPGLFLLADRYLTRTTDGELFELPQERFLVIALV 143 Query: 328 LALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 L + E ++++ A+ E Y +S + +TPTL N+G H QLSSCF+ TV D L GI+ Sbjct: 144 LMMHEPQEKRLALVREAYWAMSHLYMTVATPTLANAGKSHGQLSSCFIDTVDDSLDGIYL 203 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + A L+K GG+G + VR LG+ I G G S GVIP+++ N+TAV+V+Q G+R+ Sbjct: 204 NNWDIARLSKDGGGIGVYYGKVRALGSDIKGFKGNSSGVIPWIRQLNNTAVSVDQLGQRQ 263 Query: 446 GAVCAYLETWHIDV-EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-------A 497 GA+ YL+ +H D+ FLDL+ N GD+RR+ HD+ T +PDLFMK++ + Sbjct: 264 GAIAVYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVCLPDLFMKKLEETDENGRSIG 323 Query: 498 GWTLFSPDEVSDLHDLYGKEFE-IAYENYERQADRGEI---------------KVFRKIS 541 W +F P EV + K+ + E++ +ADR + +R + Sbjct: 324 EWHVFCPHEVKQIMGWKDKDGNPLGLEDFFDEADRPYFTEKYEEAVHHPLLPRETYRAMD 383 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-----VVHSSNLCTEITLNSS--- 593 +A +M+ ETG P+ ++D N ++P + G ++SSNLCTEI N S Sbjct: 384 IMA---RMMVSQLETGTPYFFYRDEVNRQNPNKIAGEPGRTTIYSSNLCTEIAQNMSPSV 440 Query: 594 ------SEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 +EE VCNL S+NL N D D L I +R+LDNVI Sbjct: 441 ITKEYETEEGDQVIVRKPGDFVVCNLSSVNL-----GNAGDPDILKRLIPIQMRMLDNVI 495 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N +++A+++N +RA+GLG G+ L I + S EAV+ AD E I++ AI Sbjct: 496 DLNQLPVQQARRTNSRYRAVGLGTFGWHHYLAKNQIHWESDEAVQEADRLYETIAYLAIE 555 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA+E+GAY +FKGS W+ G + E R + N W LKK V Sbjct: 556 ASAALAREKGAYPAFKGSEWESGRY--------FERRGYTSAN------WQTLKKTVSES 601 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RN MA+AP ++ A I G + IDP Y + + + F V L + Sbjct: 602 GVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEFAEEKKNFKFLVTAPELDH-------- 653 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + T +D W I + RQK IDQ S NLY Sbjct: 654 ----------------------NTYPYYQKTRHTLDQTWSIRQNAARQKHIDQGVSFNLY 691 Query: 877 LDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K+L ++ +AW GLKTTYY+RS S +E Sbjct: 692 VHHAIRAKELLSLHLEAWKQGLKTTYYIRSTSQEEIE 728 >gi|329928245|ref|ZP_08282156.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. HGF5] gi|328937963|gb|EGG34364.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. HGF5] Length = 792 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 250/804 (31%), Positives = 390/804 (48%), Gaps = 97/804 (12%) Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEKE 213 ++F+ RL + + GL + + +L + + ++ ++ +A S+ L+ KE Sbjct: 28 LAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMSALELVTKE 87 Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 PN+ AR L L ++ T + KA E + +++G+ L S Sbjct: 88 EPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGIYREDLLTS 144 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 + L + RD F+Y+GL L +RY + +G +E+PQ +M +AM L Sbjct: 145 YTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMVIAMFLMHN 204 Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388 E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L GIF + Sbjct: 205 EPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 264 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q G RKGA+ Sbjct: 265 DIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 324 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W+LF P EV Sbjct: 325 AVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWSLFCPHEVK 384 Query: 509 DL---HDLYGKEFEIAYENYERQADRGEIKVFRK---------------ISAVALWRKML 550 + D G+ + + Y+ GE FR+ + A+ + ++++ Sbjct: 385 KIMGWKDENGRPLGLE-DFYDHTQGEGE---FRQKYAEAVANPLLPRITVQAIDIMKRIM 440 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET-------- 597 ETG P++ ++D N +P G+++SSNLCTEI N S EE Sbjct: 441 KSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKDGQTR 500 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL SI+L L + VR+LDNVIDIN + +A+ Sbjct: 501 IVISKIPGDFVVCNLNSIHLARAVPAG-----VLERLVPIQVRMLDNVIDINNIEVLQAQ 555 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RA+GLG G L L I + S EAV D E I++ + +S+ELA+E+G Sbjct: 556 YTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAKEKGH 615 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y FKGS W+ G + E + W EL++ V+ G+RN+ AIA Sbjct: 616 YPKFKGSDWESGEY----FTFRGYTDGEHEGKFVTTEQWRELQQEVQANGVRNAWLFAIA 671 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + I G + SIDP Y+ L + + + V N +L ++ +W Sbjct: 672 PNGSTSIIAGSTASIDPLYELLSYEEKTT--YKVANP--APDLSEKTIW----------- 716 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 + TAF ID W I+ A+ RQ+ +DQAQS NLY+ P + +F Sbjct: 717 ----------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYV-RPDIRASEF 759 Query: 888 --IYRQAWLMGLKTTYYLRSRSAT 909 ++ AW G+K+TYY+RSR+ T Sbjct: 760 LELHLHAWKAGIKSTYYVRSRALT 783 >gi|257468677|ref|ZP_05632771.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium ulcerans ATCC 49185] gi|317062932|ref|ZP_07927417.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium ulcerans ATCC 49185] gi|313688608|gb|EFS25443.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium ulcerans ATCC 49185] Length = 748 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 240/770 (31%), Positives = 378/770 (49%), Gaps = 99/770 (12%) Query: 169 ACSGLQDVSSKIVLSETY-KNMY-DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLL 225 AC GL+ +V E+Y ++Y + ++ ++ +LI + + +E ++ V R L+ Sbjct: 26 ACEGLE---VNMVELESYIDSIYQENITTKKIQESLINQAVAMTSFEESDWTYVAGRLLM 82 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESMMDFDLVYLA 282 + REV H+ Y +++ E+G+ L E D ++ L Sbjct: 83 METEREVF------------HKRGFSYGDFYKTIKTLTEKGIYDSRLQEYTKD-EIKELE 129 Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 + RD ++Y G + +RY L G+ E+PQ FM +AM LA+ E ++ A F Sbjct: 130 KVIDISRDMMYDYAGANMFVNRYLLKFKGNIYELPQEVFMCIAMLLAINEEDRVAVAKRF 189 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 YN LS +TP L N LSSCF+T + D++ IF + A ++K GG+G Sbjct: 190 YNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFYNIDTIAKISKSGGGVGL 249 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R + ++G S GV+P++K+ NDTAVAVNQ G+R GAV A L++WH+D+E F Sbjct: 250 NISRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRAGAVTAALDSWHLDIELF 309 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE 517 L+L+ GD R + +D+ + DLFMKRV +N WTL P EV +L +LYG++ Sbjct: 310 LELQTENGDQRGKAYDIYPQVVLSDLFMKRVEENLEWTLIDPYEVRKKYGVELCELYGEK 369 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 FE YE E+ +++ + I A L+++++ + ETG P+I FKD N+ + H G Sbjct: 370 FEEIYEKLEKDTS---LELKKVIKARELFKEIMKVQIETGMPYIFFKDRANLMNHNSHKG 426 Query: 578 VVHSSNLCTEITLNSS-----SEETA--------------VCNLGSINLLAHFANNQFDY 618 ++ + NLC E N S +EET CNL S+NL Sbjct: 427 MIGNGNLCMESFSNFSPSKNFAEETVEEKGVRTVNLGEVHTCNLVSLNLAEILK------ 480 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L + + TAVR+LDN ID+ I+++ K N ++R IG+G MG L + Y E Sbjct: 481 EELENIVDTAVRILDNTIDLTKTPIKESDKHNVSYRTIGVGTMGLADYLAREFMIY--DE 538 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 ++ DE E I+ ++I +S LA++RG Y +FKGSLWD+G+F + R+ Sbjct: 539 SMNDIDELFEEIALYSIKSSALLAKDRGEYPAFKGSLWDKGLF-------FQKDREWYMK 591 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 N W E+ + VK GMRN AIAP + + + G + S++P++ Y++ N G Sbjct: 592 NSKYADKWGEVFELVKKYGMRNGELTAIAPNTSTSLLMGATASVNPTFSRFYIEKNQKGA 651 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 V V LK R W + ++P ++ Sbjct: 652 VPRV----VKYLKDR-AW---------------------------FYPEFKNVNPQTYVK 679 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLKTTYYLRS 905 SR KW Q S+ L D K IY AW G K+ YY+R+ Sbjct: 680 IMSRIGKWTTQGVSMELIFDLNKNIKAKDIYDTFMTAWKNGCKSVYYIRT 729 >gi|21233408|ref|NP_639325.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770373|ref|YP_245135.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. campestris str. 8004] gi|21115248|gb|AAM43207.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575705|gb|AAY51115.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris str. 8004] Length = 827 Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 250/762 (32%), Positives = 377/762 (49%), Gaps = 105/762 (13%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAG 162 Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y + ++E + R ++ +S +L+ + ERD F Y GL +L R Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYLLATR 220 Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359 Y L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + +TPTL Sbjct: 221 Y-LATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLA 279 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G + Sbjct: 280 NAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSN 339 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ Sbjct: 340 SSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRAHDV 399 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--G 532 T+ IPDLFM+ V + W LF P EV L D Y ++ A ++ ++ + Sbjct: 400 FTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEEVVA 459 Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N Sbjct: 460 DERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQN 519 Query: 592 SS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRT 627 S + + VCNL SINL +Q D D L I Sbjct: 520 MSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPI 579 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + +DE Sbjct: 580 QVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELY 639 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-W 746 E I++ + AS+ELA+E+G YS F+GS W G E R P W Sbjct: 640 ERINYLTVQASMELAKEKGTYSVFRGSDWHTG---------------EYFRARDYNSPQW 684 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL +V G+RN+ +A+AP + A I G + SIDP Y Y + V L Sbjct: 685 LELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL 744 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 D W Y G A+++D + +RRQ+ Sbjct: 745 -----SLDTWP-------YYEKG------------------AYKVDQFASVRQNARRQRH 774 Query: 867 IDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 IDQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 775 IDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 814 >gi|319785672|ref|YP_004145147.1| ribonucleoside-diphosphate reductase, subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317464184|gb|ADV25916.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudoxanthomonas suwonensis 11-1] Length = 814 Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 260/796 (32%), Positives = 383/796 (48%), Gaps = 102/796 (12%) Query: 155 ISFNSKRLEMIVEEACSGLQDVS----SKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 ++F+ RLE ++ +G + + VL + LS DL LI + + Sbjct: 63 LAFDPARLERSIDVIAAGFPQLEIGDYKRAVLGFVARK--PALSADDLVDHLIREAEARV 120 Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKA 266 + P + + AR L +L YK+ + ++ Y Y + G+ + Sbjct: 121 DLTAPEWERFAARLYLRRL--------YKRASRNRFYDAGQKYGSYVGLQESLADRGIYS 172 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325 + + +L ++ ERD F Y GL +L RY + E+PQ ++ +A Sbjct: 173 NDILRAYSKEELEEAGRMIEPERDKLFAYNGLYLLATRYLATDTARNVYELPQERWLTIA 232 Query: 326 MGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 + L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ TV D L G Sbjct: 233 LYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLQNAGKVGGQLSSCFIDTVDDSLQG 292 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + + A ++K GG+G VR GA I G S GV+P++K N+TAV+V+Q G Sbjct: 293 IYDSNTDIARVSKGGGGVGAYLGYVRAAGAPIRGVPNSSGGVVPWIKQLNNTAVSVDQLG 352 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKGAV YL+ WH D+E FLDLR N GD R R HD+ TA IPDLFM+ V + W LF Sbjct: 353 QRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDLFMEAVERRGDWYLF 412 Query: 503 SPDEVSDLHDLYGKEF------EIAYEN-YERQADRGEIKVFRKISAVALWRKMLTMLFE 555 P EV Y ++F E ++ + Y+ + G I R + A+ L+++++ E Sbjct: 413 DPHEVKQAKGWYLQDFYDERRGEGSFRSKYQELVEDGRIGR-RTVKAIDLFKRIMVSQLE 471 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEE 596 TG+P++ ++D N ++P +H G V+SSNLCTEI N S + + Sbjct: 472 TGNPFMFYRDEVNRKNPNKHCGTVYSSNLCTEILQNQSPTRMIQEVISGNQIVTTRQAGD 531 Query: 597 TAVCNLGSINLLAHF--ANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL SINL A+ Q D D L + VR+LDNVID+N + +A +N Sbjct: 532 FVVCNLSSINLGRAVVQADGQGDLISDVLERLVPIQVRMLDNVIDLNQLPVPQATITNRR 591 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RAIGLG G+ L L I + S EA + +D E I+ AI AS+ELA+E+G Y +F Sbjct: 592 YRAIGLGTFGWHHLLALKGIHWDSKEAEDYSDALYERINRLAIQASMELAKEKGTYPAFP 651 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + E N W +L +V G+RN +A+AP + Sbjct: 652 GSDWHTGAY-----------FRERGYNSPE---WLDLAAQVAVNGLRNGWLLAVAPNMST 697 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A I G S SIDP Y Y + V L E W Y G Sbjct: 698 AQIAGSSASIDPVYSAFYYEEKKDYRRPVAAPGLSLE-----TWP-------YYEKG--- 742 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IY 889 A+++D + +RRQ+ +DQA S NLY+ PS + ++ Sbjct: 743 ---------------AWKVDQFASVRQNARRQRHVDQAISFNLYV--PSSIRASVLLELH 785 Query: 890 RQAWLMGLKTTYYLRS 905 + W GLKTTYY+RS Sbjct: 786 LEGWRQGLKTTYYVRS 801 >gi|188993573|ref|YP_001905583.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. campestris str. B100] gi|167735333|emb|CAP53547.1| Ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris] Length = 827 Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 250/762 (32%), Positives = 377/762 (49%), Gaps = 105/762 (13%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAG 162 Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y + ++E + R ++ +S +L+ + ERD F Y GL +L R Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYLLATR 220 Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359 Y L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + +TPTL Sbjct: 221 Y-LATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLA 279 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G + Sbjct: 280 NAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSN 339 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ Sbjct: 340 SSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRAHDV 399 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--G 532 T+ IPDLFM+ V + W LF P EV L D Y ++ A ++ ++ + Sbjct: 400 FTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEEVVA 459 Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N Sbjct: 460 DERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQN 519 Query: 592 SS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRT 627 S + + VCNL SINL +Q D D L I Sbjct: 520 MSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPI 579 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + +DE Sbjct: 580 QVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELY 639 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-W 746 E I++ + AS+ELA+E+G YS F+GS W G E R P W Sbjct: 640 ERINYLTVQASMELAKEKGTYSVFRGSDWHTG---------------EYFRARDYNSPQW 684 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL +V G+RN+ +A+AP + A I G + SIDP Y Y + V L Sbjct: 685 LELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL 744 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 D W Y G A+++D + +RRQ+ Sbjct: 745 -----SLDTWP-------YYEKG------------------AYKVDQFASVRQNARRQRH 774 Query: 867 IDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 IDQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 775 IDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 814 >gi|323486977|ref|ZP_08092291.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14163] gi|323399689|gb|EGA92073.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14163] Length = 764 Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 238/742 (32%), Positives = 366/742 (49%), Gaps = 98/742 (13%) Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI ++ L KE P++ + A LL + R + ++ H + Y RY+ Sbjct: 74 LIQAAAELTRKEAPDWEYIAAYLLLVRFRINLR-------EEDKKHGIGSFYDR--IRYL 124 Query: 261 -EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 E + + E +L + +RD F Y GL +L RY + + +E PQ Sbjct: 125 TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLESPQ 184 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +++ LA+KE + + V+ FY++LS+ +TPTL N+ + QLSSCF+ TVP Sbjct: 185 EMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVP 244 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVA Sbjct: 245 DSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTAVA 304 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + Sbjct: 305 VDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADEAI 364 Query: 496 NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKM 549 ++ W L P E+ L D YG+E+E Y + + ++ +++ + + R + Sbjct: 365 DSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKDE-----RIPKRVLPIKDIIRLI 419 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA----------- 598 L ETG P+ +D N +P +H G+++ SNLCTEI N S E Sbjct: 420 LKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGET 479 Query: 599 ------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 VCNL S++L N D +L +R AVR LDNVID+N + A Sbjct: 480 VVVTVTKPGDFVVCNLASLSL---GKINVSDRSELTFLVRCAVRALDNVIDLNFFPVPYA 536 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K +N +R +GLG+ G+ L I + S E + IAD E+I++ AI AS + A+E+G Sbjct: 537 KINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEKG 596 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 Y F GS W G + + DE W L+++ +G+RN +A Sbjct: 597 CYEYFPGSGWQTGSY----FEMRGYCSDE----------WRRLREKAAAVGLRNGWLIAA 642 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT++ + I G + +DP Y++ +G V EL W Sbjct: 643 APTSSTSMISGTTAGLDPIMNRFYLEEKKTGLVPRV----APELTPSTYWR--------- 689 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 + A ID W + +A RQ+ IDQAQS+NLY+ + + +++ Sbjct: 690 ------------------YKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQV 731 Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 732 LELYLLAWKSGVKTIYYIRSKS 753 >gi|315644972|ref|ZP_07898100.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus vortex V453] gi|315279683|gb|EFU42985.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus vortex V453] Length = 777 Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 250/804 (31%), Positives = 390/804 (48%), Gaps = 97/804 (12%) Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEKE 213 ++F+ RL + + GL + + +L + + ++ ++ +A S+ L+ KE Sbjct: 13 LAFDEIRLSVYADRNLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMSALELVTKE 72 Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 PN+ AR L L ++ T + KA E + +++G+ L S Sbjct: 73 EPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGIYREDLLTS 129 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALK 331 + L + RD F+Y+GL L +RY +G +E+PQ +M +AM L Sbjct: 130 YTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLATDFDGRVMELPQERYMVIAMFLMHN 189 Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388 E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L GIF + Sbjct: 190 EPADKRIDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 249 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q G RKGA+ Sbjct: 250 DIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 309 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W+LF P EV Sbjct: 310 AVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGICLPDLFMEAVEAREEWSLFCPHEVK 369 Query: 509 DL---HDLYGKEFEIAYENYERQADRGEIKVFRK---------------ISAVALWRKML 550 + D G+ + + Y++ GE FR+ + A+ + ++++ Sbjct: 370 KIMGWKDENGRPLGLE-DFYDQAQGDGE---FRQKYAEAVANPQLPRITVQAIDIMKRVM 425 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET-------- 597 ETG P++ ++D N +P G+++SSNLCTEI N S EE Sbjct: 426 KSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKDGQTR 485 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 VCNL SI+L L + VR+LDNVIDIN + +A+ Sbjct: 486 IVISKIPGDFVVCNLNSIHLARAVPAG-----VLERLVPIQVRMLDNVIDINNIEVLQAQ 540 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +RA+GLG G L L I + S EAV D E I++ + +S+ELA+E+G Sbjct: 541 YTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAKEKGH 600 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y FKGS W+ G + E + W EL++ V+ G+RN+ AIA Sbjct: 601 YPKFKGSDWESGEY----FTFRGYTDGEHEGKFVTTEQWRELQQEVQANGVRNAWLFAIA 656 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + I G + SIDP Y+ L + + + V N +L ++ +W Sbjct: 657 PNGSTSIIAGSTASIDPLYELLSYEEKTT--YKVANP--APDLSEKTIW----------- 701 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 + TAF ID W I+ A+ RQ+ +DQAQS NLY+ P + +F Sbjct: 702 ----------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYV-RPDIRASEF 744 Query: 888 --IYRQAWLMGLKTTYYLRSRSAT 909 ++ AW G+K+TYY+RSR+ T Sbjct: 745 LELHLHAWKAGIKSTYYVRSRALT 768 >gi|323692022|ref|ZP_08106270.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] gi|323503945|gb|EGB19759.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] Length = 764 Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 238/742 (32%), Positives = 366/742 (49%), Gaps = 98/742 (13%) Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI ++ L KE P++ + A LL + R + ++ H + Y RY+ Sbjct: 74 LIQAAAELTRKEAPDWEYIAAYLLLVRFRINLR-------EEDKKHGIGSFYDR--IRYL 124 Query: 261 -EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 E + + E +L + +RD F Y GL +L RY + + +E PQ Sbjct: 125 TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLESPQ 184 Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +++ LA+KE + + V+ FY++LS+ +TPTL N+ + QLSSCF+ TVP Sbjct: 185 EMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVP 244 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVA Sbjct: 245 DSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTAVA 304 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495 V+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + Sbjct: 305 VDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADEAI 364 Query: 496 NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKM 549 ++ W L P E+ L D YG+E+E Y + + ++ +++ + + R + Sbjct: 365 DSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKDE-----RIPKRVLPIKDIIRLI 419 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA----------- 598 L ETG P+ +D N +P +H G+++ SNLCTEI N S E Sbjct: 420 LKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGET 479 Query: 599 ------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 VCNL S++L N D +L +R AVR LDNVID+N + A Sbjct: 480 VVVTVTKPGDFVVCNLASLSL---GKINVSDRSELTFLVRCAVRALDNVIDLNFFPVPYA 536 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K +N +R +GLG+ G+ L I + S E + IAD E+I++ AI AS + A+E+G Sbjct: 537 KINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEKG 596 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 Y F GS W G + + DE W L+++ +G+RN +A Sbjct: 597 CYEYFPGSGWQTGSY----FEMRGYCSDE----------WRRLREKAAAVGLRNGWLIAA 642 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT++ + I G + +DP Y++ +G V EL W Sbjct: 643 APTSSTSMISGTTAGLDPIMNRFYLEEKKNGLVPRV----APELTPSTYWR--------- 689 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 + A ID W + +A RQ+ IDQAQS+NLY+ + + +++ Sbjct: 690 ------------------YKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQV 731 Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RS+S Sbjct: 732 LELYLLAWKSGVKTIYYIRSKS 753 >gi|210616054|ref|ZP_03290926.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787] gi|210149962|gb|EEA80971.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787] Length = 749 Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 248/754 (32%), Positives = 378/754 (50%), Gaps = 109/754 (14%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHH 246 E +L+ + + ++ P + + AR LL RE+ +TT+Y +K + Sbjct: 53 EENLQLLIKAAVELTTQEAPKWEMIAARLLLFTFERELRKAEESCQITTLY---EKIVYL 109 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 + LY +Y +E K E + +F+ +LA ER+ F Y GL++L +RY Sbjct: 110 TGRGLYGQYI---LENYTK-----EEIDEFE-TFLAP----ERNDLFTYSGLELLLNRYV 156 Query: 307 LHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTR 364 +H G +E PQ F+ +AM LA+KE + V+ FY++LS +TPTL N+ Sbjct: 157 IHTGQGVALESPQEMFLGIAMHLAMKEQKDRALWVKRFYDMLSKLQVTMATPTLSNARKP 216 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + QLSSCF+ VPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GV Sbjct: 217 YHQLSSCFIDIVPDSLNGIYRSIDNFAKVSKFGGGMGMYFGKVRASGSAIRGFEGAAGGV 276 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 I ++++ANDTAVAV+Q G R+GAV YL+ WH D+ EFL+LR N GDDR + HD+ A Sbjct: 277 IRWIRLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLNLRTNNGDDRMKAHDVFPAVC 336 Query: 485 IPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVF 537 PD F ++ N W L P E+ L D YG+ ++ E Y +IK Sbjct: 337 YPDYFWEQARDNIEGDWYLMCPHEILTVKGYALEDCYGEAWK---EKYLDCVQDDQIKK- 392 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--- 594 R + + R ++ ETG P+ +D N +P H G+++ SNLCTEI N S Sbjct: 393 RVVPIKDIIRLIIKSAVETGTPFTFNRDHVNRMNPNGHKGMIYCSNLCTEIAQNMSGIEE 452 Query: 595 --------------------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E VCNL S++L H N D +++A + AVR LDN Sbjct: 453 VEERVETVNGETVVVTVTKPGEFVVCNLASLSL-GHL--NVEDGEEIADITKCAVRALDN 509 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID+N + AK +N +R IGLG+ G+ L I + S + ++ + I + A Sbjct: 510 VIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKQGISWESEQHLQFVGDVFSKIHYAA 569 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 I AS E+A+E+G+Y+ F+GS W G + D L E W++L+++VK Sbjct: 570 IEASSEIAKEKGSYTYFEGSDWQTGKY-FDKRHLKTE-------------KWNQLREKVK 615 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RN+ +AIAPT++ + I G S +DP +++ +G V EL Sbjct: 616 QQGLRNAYLLAIAPTSSTSIIAGTSAGLDPIMNRYFLEEKKNGLMPRV----APELSMET 671 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 W + A ID W + + RQ+ IDQAQS+N Sbjct: 672 FW---------------------------YYKNAHYIDQKWSVRACGVRQRHIDQAQSMN 704 Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 LY+ +E + +K+ +Y AW G+KT YY+RS+S Sbjct: 705 LYITNEYTFRKVLDLYILAWEEGVKTIYYIRSKS 738 >gi|307205346|gb|EFN83694.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos saltator] Length = 701 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 203/625 (32%), Positives = 342/625 (54%), Gaps = 23/625 (3%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + + Y+RDF + Y +IL +++ L +NG +E PQ MRVA+ + + A+ Sbjct: 81 LNSAIIYDRDFNYSYTAFKILENKHLLRLNGKVVERPQHMLMRVAVSI---HNDDVDNAI 137 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399 E YNLLS + + + TL ++ T Q++S FL T+ +D + GI +L+ A+L ++G Sbjct: 138 ETYNLLSKQYIVHAAQTLNSACTVKQQMASSFLLTMSEDSIDGILDSLERVAVLCHHNGD 197 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G + +R I GT G S G++P L+ N T++ +G + YLE WH D+ Sbjct: 198 IGFNVHCIRAKNTPIRGTGGVSNGLVPMLRAYN-TSIPTVCRKNIEGPITVYLEPWHSDI 256 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FL+L+++ GD++ R DM A W PD+FM+RV +A W+L P E L D++G EFE Sbjct: 257 YQFLELKRDIGDEQLRAKDMFYALWTPDIFMRRVFDDADWSLMCPHECPGLIDVWGDEFE 316 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y YE E + +++ A LW + + +TG P+I +KD CN++S QQ++G + Sbjct: 317 ALYIRYEE-----ENRYRKQVKARDLWVFITQLQIQTGTPYIVYKDHCNLKSNQQNLGTI 371 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + + TE+ S+S+E A C+L +I ++ + +D+ KL ++ LD +ID Sbjct: 372 NCGSFSTEVIQYSASDEIAACHLATIAVDMFVNSTTKTYDFSKLKKVVKIVTYNLDKMID 431 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N + +E+ S + RAIG+ G A L+ P+ S EA ++ + E + A+ A Sbjct: 432 VNLYPLEEVTFSAYRQRAIGISASGLADAFILMRYPFESKEAKKLNVQIFETFYYGALEA 491 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S E+A E G Y++++GS +G+ + T WD LK ++ G Sbjct: 492 SCEMAIEDGPYATYEGSPVSKGILQYEMWN----------AKPTDLWDWDTLKAKIAKYG 541 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNS +A +A + G ++S+ P N+ S F V L+ +L ++ LW Sbjct: 542 VRNSLLIAQTSDTFMAQMLGNNESVGPYTSNICTMHASSKLFPYVKKHLLRDLIEKGLWS 601 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E M + + + GSI +I+ IPDDLK ++ TA+E+ + E A+ R +IDQ+Q LN+++ Sbjct: 602 EDMCNKIISNGGSIQDIDDIPDDLKLLYKTAWEMPQKRIFEMAAARGPFIDQSQCLNVHM 661 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYY 902 +PS KL ++ AW +GLK++ Y Sbjct: 662 KDPS-DKLTSMHFYAWEIGLKSSMY 685 >gi|15837798|ref|NP_298486.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa 9a5c] gi|9106168|gb|AAF84006.1|AE003954_3 ribonucleoside-diphosphate reductase alpha chain [Xylella fastidiosa 9a5c] Length = 830 Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 253/765 (33%), Positives = 375/765 (49%), Gaps = 109/765 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 112 DSVNADDLVDLLIREAEARVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163 Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y + ++E + R ++ S +L+ + ERD F Y GL +L R Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221 Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCS 354 Y L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + + Sbjct: 222 Y-LATDASRGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVA 280 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 TPTL N+G + QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I Sbjct: 281 TPTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMI 340 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G S GV+P++K N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R Sbjct: 341 RGVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRL 400 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQA 529 R HD+ T+ IPDLFM+ V + W LF P EV L D Y ++ ++ R+ Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKCVKGWYLQDFYDEKRGDPNGSFRRKY 460 Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCT Sbjct: 461 EDVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCT 520 Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLAST 624 EI N + + + VCNL SIN L Q D D L Sbjct: 521 EILQNMTPTRLIQEMISGNQIVTTKQAGDFVVCNLSSIN-LGRAITVQADLLGADVLERL 579 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + SPEA + +D Sbjct: 580 IPIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSPEAEQYSD 639 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E I++ I AS+ELA+E+G Y+ F GS W G E R Sbjct: 640 ALYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNS 684 Query: 745 P-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 P W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + VV Sbjct: 685 PQWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVA 744 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L D W Y G A+++D I +RR Sbjct: 745 PGL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARR 774 Query: 864 QKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 775 QRHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817 >gi|238879998|gb|EEQ43636.1| ribonucleoside-diphosphate reductase large chain [Candida albicans WO-1] Length = 583 Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 207/581 (35%), Positives = 313/581 (53%), Gaps = 44/581 (7%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALI 203 KI + G F+S ++ ++EE L D+ ++ + + L+ +L T A + Sbjct: 3 KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK--------KPQKATHHEMQCLYPEY 255 +SR + P+YA + R KL +V + + +P+K+ + Sbjct: 63 IASRVIYH--PDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP---ISSA 117 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F + +++ H +D + RD+ Y G++ L Y L I+G E Sbjct: 118 FYKVVKK-------HGEFLD-------KVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAE 163 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FMRVA+G+ + E Y+L+S +F+ ++PTL+N+G+ LSSCFL Sbjct: 164 LPQYLFMRVAIGIHQNDINA---IAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVA 220 Query: 376 VPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + DD + GIF L E A+++K SGG+G +R G++I TNG S G++P L+V N+T Sbjct: 221 MKDDSIDGIFKTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNT 280 Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 A V+QGG KR GA Y+E WH D+ + L++RKN G++ RT D+ WIPDLFMKRV Sbjct: 281 ARYVDQGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRV 340 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N+ WTLFSP+E L D+YG+EFE Y YE + K+SA LW +L Sbjct: 341 KENSDWTLFSPNEAVGLSDVYGEEFEKLYCKYESEG------FGTKVSAHKLWLAILHSQ 394 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ETG P++ +KD CN +S Q+++G + SSNLC EI SS +ETAVCNL S+ L + Sbjct: 395 TETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKT 454 Query: 614 NQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + FD++KL S + R L+ VID+ + +E A+ SN HR I LG+ G Sbjct: 455 TEDAIGFDFEKLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAE 514 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 L +P+ S A + + E I A+ ASVELA + G Y + Sbjct: 515 LRLPFDSAMAKTLNIQIFETIYHAALEASVELAMKEGPYET 555 >gi|317499962|ref|ZP_07958198.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|316898679|gb|EFV20714.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] Length = 761 Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 233/685 (34%), Positives = 350/685 (51%), Gaps = 94/685 (13%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQA 319 E+G+ + E+ ++V + + ER+ F Y GL +L RY + + +E PQ Sbjct: 122 EKGLYGSYIMENYSKEEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQE 181 Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +A+ LA+ E K + EFY++LS +TPTL N+ QLSSCF+ TVP Sbjct: 182 MFLGIALHLAMNEKRKIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVP 241 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GIF ++ AM++KY GG+G + VR G+ I G G + GVI ++++ NDTAVA Sbjct: 242 DSLKGIFRSIDNFAMVSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVA 301 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496 V+Q G R GAV YL+ WH D+ EFL LR N GD+R + HD+ A PDLF K +N Sbjct: 302 VDQLGVRAGAVAVYLDAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENL 361 Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 W L P E+ L D +G+E+E Y + A + V K L R ++ Sbjct: 362 DQDWYLMCPHEIMTVKGYCLEDSFGEEWERRYWDCVHDARIKKRTVLLK----DLIRLII 417 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593 ETG P+ +D N +P H G+++ SNLCTEI N S Sbjct: 418 KSAAETGTPFAFNRDTVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTV 477 Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + E VCNL S++ L + N Y + T VR LDNVID+N + + AK Sbjct: 478 VVNTTKAGEFVVCNLASLS-LGNLPVNDPAYVRKVVR--TVVRALDNVIDLNFYPVPYAK 534 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +NHT+R+IGLG+ G+ L I + S E + D+ E I++ AI AS + A+E+G+ Sbjct: 535 ITNHTYRSIGLGVSGYHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGS 594 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W+ G + + G ++ W EL+++V GMRN+ +AIA Sbjct: 595 YRYFEGSDWESGAY-FEKRGYCSD-------------EWKELREKVHRQGMRNAYLLAIA 640 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + IDP V+N + + E K Sbjct: 641 PTSSTSIIAGTTAGIDP----------------VMNKYFLEEKK---------------- 668 Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 GS+ + R+ DL + A ID W + + RQ+ +DQAQS+N Y+ ++ + Sbjct: 669 -GSM--LPRVAPDLSPETYWYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTM 725 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y +AW G+KT YY+RS+S Sbjct: 726 RQVLNLYLKAWECGVKTVYYVRSKS 750 >gi|153814164|ref|ZP_01966832.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756] gi|145848560|gb|EDK25478.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756] Length = 761 Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 233/685 (34%), Positives = 350/685 (51%), Gaps = 94/685 (13%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQA 319 E+G+ + E+ ++V + + ER+ F Y GL +L RY + + +E PQ Sbjct: 122 EKGLYGSYIMENYSKEEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQE 181 Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +A+ LA+ E K + EFY++LS +TPTL N+ QLSSCF+ TVP Sbjct: 182 MFLGIALHLAMNEKRKIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVP 241 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GIF ++ AM++KY GG+G + VR G+ I G G + GVI ++++ NDTAVA Sbjct: 242 DSLKGIFRSIDNFAMVSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVA 301 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496 V+Q G R GAV YL+ WH D+ EFL LR N GD+R + HD+ A PDLF K +N Sbjct: 302 VDQLGVRAGAVAVYLDAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENL 361 Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 W L P E+ L D +G+E+E Y + A + V K L R ++ Sbjct: 362 DQDWYLMCPHEIMTVKEYCLEDSFGEEWERRYWDCVHDARIKKRTVLLK----DLIRLII 417 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593 ETG P+ +D N +P H G+++ SNLCTEI N S Sbjct: 418 KSAAETGTPFAFNRDTVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTV 477 Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + E VCNL S++ L + N Y + T VR LDNVID+N + + AK Sbjct: 478 VVNTTKAGEFVVCNLASLS-LGNLPVNDPAYVRKVVR--TVVRALDNVIDLNFYPVPYAK 534 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +NHT+R+IGLG+ G+ L I + S E + D+ E I++ AI AS + A+E+G+ Sbjct: 535 ITNHTYRSIGLGVSGYHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGS 594 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W+ G + + G ++ W EL+++V GMRN+ +AIA Sbjct: 595 YRYFEGSDWESGAY-FEKRGYCSD-------------EWKELREKVHRQGMRNAYLLAIA 640 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + IDP V+N + + E K Sbjct: 641 PTSSTSIIAGTTAGIDP----------------VMNKYFLEEKK---------------- 668 Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 GS+ + R+ DL + A ID W + + RQ+ +DQAQS+N Y+ ++ + Sbjct: 669 -GSM--LPRVAPDLSPETYWYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTM 725 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y +AW G+KT YY+RS+S Sbjct: 726 RQVLNLYLKAWECGVKTVYYVRSKS 750 >gi|331087815|ref|ZP_08336740.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409510|gb|EGG88951.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium 3_1_46FAA] Length = 761 Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 233/685 (34%), Positives = 350/685 (51%), Gaps = 94/685 (13%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQA 319 E+G+ + E+ ++V + + ER+ F Y GL +L RY + + +E PQ Sbjct: 122 EKGLYGSYIMENYSKEEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQE 181 Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +A+ LA+ E K + EFY++LS +TPTL N+ QLSSCF+ TVP Sbjct: 182 MFLGIALHLAMNEKRKIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVP 241 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GIF ++ AM++KY GG+G + VR G+ I G G + GVI ++++ NDTAVA Sbjct: 242 DSLKGIFRSIDNFAMVSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVA 301 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496 V+Q G R GAV YL+ WH D+ EFL LR N GD+R + HD+ A PDLF K +N Sbjct: 302 VDQLGVRAGAVAVYLDAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENL 361 Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 W L P E+ L D +G+E+E Y + A + V K L R ++ Sbjct: 362 DQDWYLMCPHEIMTVKGYCLEDSFGEEWERRYWDCVHDARIKKRTVLLK----DLIRLII 417 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593 ETG P+ +D N +P H G+++ SNLCTEI N S Sbjct: 418 KSAAETGTPFAFNRDTVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTV 477 Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + E VCNL S++ L + N Y + T VR LDNVID+N + + AK Sbjct: 478 VVNTTKAGEFVVCNLASLS-LGNLPVNDPAYVRKVVR--TVVRALDNVIDLNFYPVPYAK 534 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +NHT+R+IGLG+ G+ L I + S E + D+ E I++ AI AS + A+E+G+ Sbjct: 535 ITNHTYRSIGLGVSGYHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGS 594 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y F+GS W+ G + + G ++ W EL+++V GMRN+ +AIA Sbjct: 595 YRYFEGSDWESGAY-FEKRGYCSD-------------EWKELREKVHRQGMRNAYLLAIA 640 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT++ + I G + IDP V+N + + E K Sbjct: 641 PTSSTSIIAGTTAGIDP----------------VMNKYFLEEKK---------------- 668 Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 GS+ + R+ DL + A ID W + + RQ+ +DQAQS+N Y+ ++ + Sbjct: 669 -GSM--LPRVAPDLSPETYWYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTM 725 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y +AW G+KT YY+RS+S Sbjct: 726 RQVLNLYLKAWECGVKTVYYVRSKS 750 >gi|166710316|ref|ZP_02241523.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzicola BLS256] Length = 832 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 259/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I F +RLE +++ + DV+ + D ++ DL LI + ++ Sbjct: 73 IPFEPERLERAIDQVHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267 P + AR L +L YK+ + ++ Y + ++E + R Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182 Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 +L D +L+ ++ ERD F Y GL +L RY L + SR E+PQ ++ Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240 Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 241 IALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR G+ I G + S GV+P++K N+TA Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ T+ IPDLFM+ V + Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 420 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547 W LF P EV L D Y ++ A ++ R+ + + ++ RK + A+ +++ Sbjct: 421 RGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 480 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593 +++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540 Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643 + + VCNL SINL +Q D D L I VR+LDNVID+N + Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A +N +RAIGLG G+ L I + + EA + +DE E I++ I AS+ELA+ Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 660 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762 E+G YS F+GS W G E R P W EL +V G+RN+ Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+AP + A I G + SIDP Y Y + V L D W Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 755 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881 Y G A+++D + +RRQ+ +DQ+ S N Y+ PS Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793 Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819 >gi|325919222|ref|ZP_08181269.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325923020|ref|ZP_08184720.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325546490|gb|EGD17644.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325550296|gb|EGD21103.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] Length = 833 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 255/805 (31%), Positives = 393/805 (48%), Gaps = 112/805 (13%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I F +RLE +++ + DV+ + + D ++ DL LI + ++ Sbjct: 74 IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVDRKDSVNADDLVDHLIREAEARVDL 133 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267 P + AR L +L YK+ + ++ Y + ++E + R Sbjct: 134 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 183 Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRV 324 +L D +L+ + ERD F Y GL +L RY N + E+PQ ++ + Sbjct: 184 NDILRRYSKD-ELIEAGKMIAPERDTLFAYNGLYLLATRYLATDNSRGVFELPQERWLTI 242 Query: 325 AMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ TV Sbjct: 243 ALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV 302 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L GI+ + + A ++K+ GG+G VR G+ I G + S GV+P++K N+TAV Sbjct: 303 DDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAV 362 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ T+ IPDLFM+ V + Sbjct: 363 SVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERR 422 Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRK 548 W LF P EV L D Y ++ A ++ R+ + + ++ RK + A+ ++++ Sbjct: 423 GDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFKR 482 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593 ++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 483 IMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIV 542 Query: 594 ----SEETAVCNLGSINLLAHF--ANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIE 644 + + VCNL SINL ++Q D D L I VR+LDNVID+N + Sbjct: 543 TTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGADVLERLIPIQVRMLDNVIDLNQLPVP 602 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 +A +N +RAIGLG G+ L I + + EA + +DE E I++ + AS+ELA+E Sbjct: 603 QATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTVQASMELAKE 662 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNC 763 +G YS F+GS W G E R P W EL +V G+RN+ Sbjct: 663 KGTYSVFRGSDWHTG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAWM 707 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +A+AP + A I G + SIDP Y Y + +++D Sbjct: 708 LAVAPNMSTAQIAGSTASIDPIYSAFYYE------------------EKKDFRRPVAAPG 749 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-- 881 L ++E P A+++D + +RRQ+ IDQ+ S N Y+ PS Sbjct: 750 L--------SLETWP----YYEKGAYKVDQFASVRQNARRQRHIDQSISFNFYV--PSTI 795 Query: 882 -GKKLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 796 RASTLLDLHMTAWREGLKTTYYVRS 820 >gi|167748342|ref|ZP_02420469.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662] gi|167652334|gb|EDR96463.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662] Length = 763 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 224/663 (33%), Positives = 339/663 (51%), Gaps = 99/663 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-F 342 ++ ER+ F Y GL++L RY + G+ +E PQ FM +AM LA+KETE + V+ F Sbjct: 149 IRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGIAMHLAMKETEDRNQWVKRF 208 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y++LS +TPTL N+ + QLSSCF+ TVPD L GI+ ++ A ++K+ GG+G Sbjct: 209 YDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGL 268 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+GAV YL+ WH D+ EF Sbjct: 269 YFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGMRQGAVAVYLDVWHRDLPEF 328 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYG 515 L LR N GD+R + HD+ A PD F ++ N W L P E+ L D YG Sbjct: 329 LSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGSWYLMCPHEILTVKGYALEDCYG 388 Query: 516 KEFEIAYENY---ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E+ Y + ER + R I + R ++ ETG P+ +D N +P Sbjct: 389 TEWTEKYLDCVLDERISKR-------VIPIKDIVRMIIKSAAETGTPFTFNRDHVNRANP 441 Query: 573 QQHVGVVHSSNLCTEITLNSSS-------------EETAV----------CNLGSINLLA 609 +H G+++ SNLCTEI N S+ EE V CNL S++L Sbjct: 442 NRHKGIIYCSNLCTEIAQNMSASGQIEQKIEMIGGEEVVVTVTKPGDFVVCNLASLSLGN 501 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 DY++L+ +AVR LDNVID+N + A+ ++ +R +GLG+ G+ L Sbjct: 502 LCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRYRPVGLGVSGYHHMLAK 558 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 I + S E ++ A++ I + A++AS ++++E+G+Y F GS W G Sbjct: 559 HKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPGSDWQTG---------- 608 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 D ++ W L+ R+K G+RN +A APT++ + I G + +DP Sbjct: 609 ----DYFRKRDLTKGRWKALEDRIKKHGLRNGYLLAAAPTSSTSIIAGTTAGLDP----- 659 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK----IH 845 V+N + + E K G I R+ +L + Sbjct: 660 -----------VMNRYFLEEKK-------------------YGLIPRVAPELSMETFWYY 689 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A ID W +++ RQ+ IDQAQS+NLY+ +E + +K+ +Y AW G+KT YY R Sbjct: 690 KNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEQGVKTIYYTR 749 Query: 905 SRS 907 S+S Sbjct: 750 SKS 752 >gi|84622096|ref|YP_449468.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899022|ref|YP_199113.2| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366036|dbj|BAE67194.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 832 Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 259/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I F +RLE +++ + DV+ + D ++ DL LI + ++ Sbjct: 73 IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267 P + AR L +L YK+ + ++ Y + ++E + R Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182 Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 +L D +L+ ++ ERD F Y GL +L RY L + SR E+PQ ++ Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240 Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 241 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR G+ I G + S GV+P++K N+TA Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ T+ IPDLFM+ V + Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 420 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547 W LF P EV L D Y ++ A ++ R+ + + ++ RK + A+ +++ Sbjct: 421 RGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 480 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593 +++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540 Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643 + + VCNL SINL +Q D D L I VR+LDNVID+N + Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A +N +RAIGLG G+ L I + + EA + +DE E I++ I AS+ELA+ Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 660 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762 E+G YS F+GS W G E R P W EL +V G+RN+ Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+AP + A I G + SIDP Y Y + V L D W Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 755 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881 Y G A+++D + +RRQ+ +DQ+ S N Y+ PS Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793 Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819 >gi|325914791|ref|ZP_08177128.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538984|gb|EGD10643.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas vesicatoria ATCC 35937] Length = 833 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 248/767 (32%), Positives = 379/767 (49%), Gaps = 110/767 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 112 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 163 Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 Y + ++E + R +L D +L+ ++ ERD F Y GL +L Sbjct: 164 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 220 Query: 304 RYFLHINGSRI-EMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCS 354 RY N + E+PQ ++ +A+ L E +E+R E Y LS+ + + Sbjct: 221 RYLATDNSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVA 280 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I Sbjct: 281 TPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAI 340 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R Sbjct: 341 RGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRL 400 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQA 529 R HD+ T+ IPDLFM+ V + W LF P EV L D Y ++ A ++ R+ Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRKY 460 Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLCT Sbjct: 461 EEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCT 520 Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHF--ANNQFDY---DKLA 622 EI N S + + VCNL SINL ++Q D D L Sbjct: 521 EILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGADVLE 580 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + Sbjct: 581 RLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDY 640 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 +DE E I++ I AS+ELA+E+G YS F+GS W G E R Sbjct: 641 SDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARDY 685 Query: 743 RLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 P W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 686 NSPQWLELSAQVSVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYE--------- 736 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +++D L ++E P A+++D + + Sbjct: 737 ---------EKKDFRRPVAAPGL--------SLETWP----YYEKGAYKVDQFASVRQNA 775 Query: 862 RRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 RRQ+ +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 776 RRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 820 >gi|58424691|gb|AAW73728.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 839 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 259/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I F +RLE +++ + DV+ + D ++ DL LI + ++ Sbjct: 80 IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 139 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267 P + AR L +L YK+ + ++ Y + ++E + R Sbjct: 140 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 189 Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 +L D +L+ ++ ERD F Y GL +L RY L + SR E+PQ ++ Sbjct: 190 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 247 Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 248 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 307 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR G+ I G + S GV+P++K N+TA Sbjct: 308 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 367 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ T+ IPDLFM+ V + Sbjct: 368 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 427 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547 W LF P EV L D Y ++ A ++ R+ + + ++ RK + A+ +++ Sbjct: 428 RGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 487 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593 +++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 488 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 547 Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643 + + VCNL SINL +Q D D L I VR+LDNVID+N + Sbjct: 548 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 607 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A +N +RAIGLG G+ L I + + EA + +DE E I++ I AS+ELA+ Sbjct: 608 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 667 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762 E+G YS F+GS W G E R P W EL +V G+RN+ Sbjct: 668 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 712 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+AP + A I G + SIDP Y Y + V L D W Sbjct: 713 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 762 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881 Y G A+++D + +RRQ+ +DQ+ S N Y+ PS Sbjct: 763 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 800 Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 801 IRASTLLDLHMTAWREGLKTTYYVRS 826 >gi|28198392|ref|NP_778706.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa Temecula1] gi|182681035|ref|YP_001829195.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa M23] gi|28056462|gb|AAO28355.1| ribonucleoside-diphosphate reductase alpha chain [Xylella fastidiosa Temecula1] gi|182631145|gb|ACB91921.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylella fastidiosa M23] gi|307579503|gb|ADN63472.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa subsp. fastidiosa GB514] Length = 830 Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 252/765 (32%), Positives = 375/765 (49%), Gaps = 109/765 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + + ++ P + AR L +L YK+ + ++ Sbjct: 112 DSVNADDLVDLLIREAESRVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163 Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y + ++E + R ++ S +L+ + ERD F Y GL +L R Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221 Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCS 354 Y L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + + Sbjct: 222 Y-LATDTSRGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVA 280 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 TPTL N+G + QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I Sbjct: 281 TPTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMI 340 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G S GV+P++K N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R Sbjct: 341 RGVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRL 400 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQA 529 R HD+ T+ IPDLFM+ V + W LF P EV L D Y ++ ++ R+ Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKY 460 Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCT Sbjct: 461 EDVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCT 520 Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLAST 624 EI N + + + VCNL SIN L Q D D L Sbjct: 521 EILQNMTPTRLIQEMISGNQIVTTKHAGDFVVCNLSSIN-LGRAITVQADLLGADVLERL 579 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + S EA + +D Sbjct: 580 IPIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSD 639 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E I++ I AS+ELA+E+G Y+ F GS W G E R Sbjct: 640 ALYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNS 684 Query: 745 P-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 P W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + VV Sbjct: 685 PQWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVA 744 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L D W Y G A+++D I +RR Sbjct: 745 PGL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARR 774 Query: 864 QKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 775 QRHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817 >gi|289664734|ref|ZP_06486315.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670857|ref|ZP_06491932.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 827 Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 250/768 (32%), Positives = 380/768 (49%), Gaps = 112/768 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 106 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 157 Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 Y + ++E + R +L D +L+ ++ ERD F Y GL +L Sbjct: 158 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 214 Query: 304 RYFLHINGSR--IEMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMC 353 RY L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + Sbjct: 215 RY-LATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTV 273 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ Sbjct: 274 ATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSA 333 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R Sbjct: 334 IRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQR 393 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQ 528 R HD+ T+ IPDLFM+ V + W LF P EV L D Y ++ A ++ R+ Sbjct: 394 LRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRK 453 Query: 529 ADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLC Sbjct: 454 YEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLC 513 Query: 586 TEITLNSS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKL 621 TEI N S + + VCNL SINL +Q D D L Sbjct: 514 TEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVL 573 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + Sbjct: 574 ERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAED 633 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 +DE E I++ I AS+ELA+E+G YS F+GS W G E R Sbjct: 634 YSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARD 678 Query: 742 SRLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 679 YNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYE-------- 730 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +++D L ++E P A+++D + Sbjct: 731 ----------EKKDFRRPVAAPGL--------SLETWP----YYEKGAYKVDQFASVRQN 768 Query: 861 SRRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 +RRQ+ +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 769 ARRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 814 >gi|253582917|ref|ZP_04860135.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium varium ATCC 27725] gi|251835123|gb|EES63666.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium varium ATCC 27725] Length = 748 Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 240/770 (31%), Positives = 370/770 (48%), Gaps = 99/770 (12%) Query: 169 ACSGLQDVSSKIVLSETY-KNMY-DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLL 225 AC GL+ +V E+Y ++Y + ++ ++ +LI + + +E ++ V R L+ Sbjct: 26 ACEGLE---VNMVELESYIDSIYQENITTKKIQESLINQAVAMTSFEESDWTYVAGRLLM 82 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESMMDFDLVYLA 282 + REV H+ Y E++ E G+ L E D ++ L Sbjct: 83 METEREVF------------HKRGFSYGEFYKTIKTLTENGIYDNRLQEYTED-EIKELE 129 Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 + RD ++Y G + +RY L G+ E+PQ FM +AM LA+ E + A F Sbjct: 130 KAIDISRDMMYDYAGANMFVNRYLLKYKGNIYELPQEVFMCIAMLLAINEENRVLVAKRF 189 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 YN LS +TP L N LSSCF+T + D++ IF + A ++K GG+G Sbjct: 190 YNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFYNIDTIAKISKSGGGVGL 249 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R + ++G S GV+P++K+ NDTAVAVNQ G+R GAV L++WH+D+E F Sbjct: 250 NVSRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRAGAVTVALDSWHLDIELF 309 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE 517 L+L+ GD R + +D+ + DLFMKRV N WTL P EV +L +LYG++ Sbjct: 310 LELQTENGDQRGKAYDIYPQVVLSDLFMKRVENNLEWTLVDPYEVRIKYGVELCELYGEK 369 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 FE Y+ E+ +K+ + I A L+++++ + ETG P+I FKD N+ + H G Sbjct: 370 FEEIYKALEKDTS---LKLKKVIKARELFKEIMKVQIETGMPYIFFKDRANLMNHNNHKG 426 Query: 578 VVHSSNLCTEITLN---------SSSEETAV----------CNLGSINLLAHFANNQFDY 618 ++ + NLC E N EE V CNL S+N LA A Sbjct: 427 MIGNGNLCMESFSNFFPSKDFTEKVVEEKGVRSAKLGEVHTCNLVSLN-LAEIAR----- 480 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L + + TAVR+LDN ID+ I ++ K N +R IG+G MG L + Y E Sbjct: 481 EELENIVDTAVRMLDNTIDLTKTPIMESDKHNIAYRTIGVGTMGLADYLAREFMIY--DE 538 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 ++ DE E I+ ++I +S LA+ RG Y FKGS+WD+GVF + +D Sbjct: 539 SLNDIDELFEEIALYSIKSSALLAKNRGQYPMFKGSMWDRGVF-------FQKNKDWYIK 591 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 N W+E+ + V GMRN AIAP + + + G + S++P++ Y++ N G Sbjct: 592 NSKYATKWNEVFELVAKYGMRNGELTAIAPNTSTSLLMGATASVNPTFSRFYIEKNQKGA 651 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 V V LK R W + ++P +E Sbjct: 652 VPRV----VKYLKDR-AW---------------------------FYPEFKNVNPQIYVE 679 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRS 905 SR KW Q S+ L D + IY AW G K+ YY+R+ Sbjct: 680 IMSRIGKWTTQGVSMELIFDLNKNIRAKDIYNTLMSAWKNGCKSIYYIRT 729 >gi|78049717|ref|YP_365892.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927515|ref|ZP_08188753.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas perforans 91-118] gi|78038147|emb|CAJ25892.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542108|gb|EGD13612.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas perforans 91-118] Length = 832 Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 252/768 (32%), Positives = 377/768 (49%), Gaps = 112/768 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 162 Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 Y + ++E + R +L D +L+ ++ ERD F Y GL +L Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 219 Query: 304 RYFLHINGSR--IEMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMC 353 RY L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + Sbjct: 220 RY-LATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTV 278 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ Sbjct: 279 ATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSA 338 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R Sbjct: 339 IRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQR 398 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQ 528 R HD+ T+ IPDLFM+ V + W LF P EV L D Y ++ A ++ R+ Sbjct: 399 LRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFRRK 458 Query: 529 ADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLC Sbjct: 459 YEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLC 518 Query: 586 TEITLNSS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKL 621 TEI N S + + VCNL SINL +Q D D L Sbjct: 519 TEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVL 578 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + Sbjct: 579 ERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAED 638 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 +DE E I++ I AS+ELA+E+G YS F+GS W G E R Sbjct: 639 YSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARD 683 Query: 742 SRLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 684 YNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRP 743 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 V L E W Y G A+++D + Sbjct: 744 VAAPGLSLE-----TWP-------YYEKG------------------AYKVDQFASVRQN 773 Query: 861 SRRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 +RRQ+ +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 774 ARRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 819 >gi|188578921|ref|YP_001915850.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523373|gb|ACD61318.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 832 Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 258/806 (32%), Positives = 390/806 (48%), Gaps = 114/806 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I F +RLE +++ + DV+ + D ++ DL LI + ++ Sbjct: 73 IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267 P + AR L +L YK+ + ++ Y + ++E + R Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182 Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 +L D +L+ ++ ERD F Y GL +L RY L + SR E+PQ ++ Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240 Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 241 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR G+ I G + S GV+P++K N+TA Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ + IPDLFM+ V + Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFISVCIPDLFMEAVER 420 Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547 W LF P EV L D Y ++ A ++ R+ + + ++ RK + A+ +++ Sbjct: 421 RGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 480 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593 +++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540 Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643 + + VCNL SINL +Q D D L I VR+LDNVID+N + Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A +N +RAIGLG G+ L I + + EA + +DE E I++ I AS+ELA+ Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 660 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762 E+G YS F+GS W G E R P W EL +V G+RN+ Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+AP + A I G + SIDP Y Y + V L D W Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 755 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881 Y G A+++D + +RRQ+ +DQ+ S N Y+ PS Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793 Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819 >gi|225568011|ref|ZP_03777036.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM 15053] gi|225163185|gb|EEG75804.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM 15053] Length = 741 Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 243/751 (32%), Positives = 368/751 (49%), Gaps = 96/751 (12%) Query: 192 GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 GL++ + + L ++ L +E P + + AR L R + + + ++ + ++ Sbjct: 41 GLTDKEQLSLLTKAAVELTTQEAPGWEMIAARLLYAGFRDSLEDAMKSRGIRSFYEKIVY 100 Query: 251 LYPE-YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 L E + YI E H S + + A ++ +R F Y GL +L +RY + Sbjct: 101 LTKENLYGSYILE-------HYSRQEIEA--FAKLIEEDRSRLFTYSGLDLLLNRYVIRT 151 Query: 310 -NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQ 367 G +E PQ FM ++M LA+KE E V+ FY +LS +TPTL N+ + Q Sbjct: 152 RKGVILETPQEMFMGISMHLAMKEKENRSEWVKRFYGMLSLLKVTMATPTLSNARKPYHQ 211 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ TVPD L GI+ ++ A ++KY GG+G + VR G+ I G G + GVI + Sbjct: 212 LSSCFIDTVPDSLDGIYRSIDSFAKVSKYGGGMGMYFGKVRAGGSAIRGFEGAAGGVIRW 271 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ANDTAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD Sbjct: 272 IKLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLKLRTNNGDDRMKAHDVFPAVCYPD 331 Query: 488 LF--MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 F M R W L P EV L D YGKE+E Y + AD K R + Sbjct: 332 YFWKMARDHIEGDWYLMCPHEVLTVKGYALEDCYGKEWEEKY--LDCVADERISK--RVL 387 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--------- 591 + R ++ ETG P++ +D N +P H G+++ SNLCTEI N Sbjct: 388 PIKEIIRLIIRSAVETGTPFVFNRDEVNRMNPNGHKGIIYCSNLCTEIAQNMGAVEEVRQ 447 Query: 592 --------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + E VCNL S++L H + D ++ T+ +A+R LDNVID Sbjct: 448 SIETVDGETVVVTVTKPGEFVVCNLASVSL-GHI--DVSDEKEIYRTVSSAMRALDNVID 504 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N + AK +N +R +GLG+ G+ L I + S E + AD+ + + AI+A Sbjct: 505 LNFFPVPYAKLNNEKYRPVGLGVSGYHHMLAKHGIQWESEEHLAFADKVFDTLHRAAIAA 564 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ++A+E+G Y+ F+GS W G + + + W++L+ R + G Sbjct: 565 SCDIAEEKGVYACFEGSDWQTGAY--------------FDKRKLTGAAWEQLRARAASCG 610 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RN +A APT++ + I G + +DP Y++ +G V EL W Sbjct: 611 VRNGYMLAAAPTSSTSIIAGTTAGLDPVMHRFYLEEKKNGLVPRV----APELSMDTFW- 665 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W + + RQ+ IDQAQS+NLY+ Sbjct: 666 --------------------------YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYI 699 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +E + + + +Y AW G+KT YY+RSRS Sbjct: 700 TNEYTFRNVLDLYLLAWECGVKTVYYIRSRS 730 >gi|294625676|ref|ZP_06704298.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600045|gb|EFF44160.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 832 Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 258/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I F +RLE +++ + DV+ + D ++ DL LI + ++ Sbjct: 73 IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267 P + AR L +L YK+ + ++ Y + ++E + R Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182 Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 +L D +L+ ++ ERD F Y GL +L RY L + SR E+PQ ++ Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240 Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 241 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR G+ I G + S GV+P++K N+TA Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ T+ IPDLFM+ V + Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 420 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQADR--GEIKVFRK-ISAVALWR 547 W LF P EV + Y ++F A ++ R+ + + ++ RK + A+ +++ Sbjct: 421 RGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK 480 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593 +++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540 Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643 + + VCNL SINL +Q D D L I VR+LDNVID+N + Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A +N +RAIGLG G+ L I + + EA + +DE E I++ I AS+ELA+ Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK 660 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762 E+G YS F+GS W G E R P W EL +V G+RN+ Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+AP + A I G + SIDP Y Y + V L E W Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLE-----TWP----- 755 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881 Y G A+++D + +RRQ+ +DQ+ S N Y+ PS Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793 Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819 >gi|71276517|ref|ZP_00652792.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71900742|ref|ZP_00682864.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|170729740|ref|YP_001775173.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa M12] gi|71162694|gb|EAO12421.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71729512|gb|EAO31621.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|167964533|gb|ACA11543.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12] Length = 830 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 251/765 (32%), Positives = 373/765 (48%), Gaps = 109/765 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 112 DSVNADDLVDLLIREAEARVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163 Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y + ++E + R ++ S +L+ + ERD F Y GL +L R Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221 Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCS 354 Y L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + + Sbjct: 222 Y-LATDASRGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVA 280 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 TPTL N+G + QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I Sbjct: 281 TPTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMI 340 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G S GV+P++K N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R Sbjct: 341 RGVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRL 400 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQA 529 R HD+ T+ IPDLFM+ V + W LF P EV L D Y ++ ++ R+ Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKY 460 Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCT Sbjct: 461 EDVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCT 520 Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLAST 624 EI N + + + VCNL SIN L Q D D L Sbjct: 521 EILQNMTPTRLIQEMISGNQIVTTKHAGDFVVCNLSSIN-LGRAITVQADLLGADVLERL 579 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + S EA + +D Sbjct: 580 IPIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSD 639 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E I++ I AS+ELA+E+G Y+ F GS W G E R Sbjct: 640 VLYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNS 684 Query: 745 P-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 P W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + V Sbjct: 685 PQWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPVYSAFYYEEKKDYRRPVAA 744 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L D W Y G A+++D I +RR Sbjct: 745 PGL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARR 774 Query: 864 QKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 775 QRHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817 >gi|73988081|ref|XP_862175.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 3 [Canis familiaris] Length = 491 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 190/488 (38%), Positives = 289/488 (59%), Gaps = 31/488 (6%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T ++ TL K P+YA + AR Sbjct: 22 IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279 + L +E +K M+ LY YI G + ++ +S +D L Sbjct: 82 AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128 Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ ++ + Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K + Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456 GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE WH Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+ Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE+YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ++ Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635 G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ + Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480 Query: 636 IDINCHTI 643 IDIN + + Sbjct: 481 IDINYYPV 488 >gi|294664799|ref|ZP_06730123.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605430|gb|EFF48757.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 836 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 258/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%) Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I F +RLE +++ + DV+ + D ++ DL LI + ++ Sbjct: 77 IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 136 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267 P + AR L +L YK+ + ++ Y + ++E + R Sbjct: 137 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 186 Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 +L D +L+ ++ ERD F Y GL +L RY L + SR E+PQ ++ Sbjct: 187 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 244 Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 245 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 304 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR G+ I G + S GV+P++K N+TA Sbjct: 305 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 364 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ T+ IPDLFM+ V + Sbjct: 365 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 424 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQADR--GEIKVFRK-ISAVALWR 547 W LF P EV + Y ++F A ++ R+ + + ++ RK + A+ +++ Sbjct: 425 RGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK 484 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593 +++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 485 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 544 Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643 + + VCNL SINL +Q D D L I VR+LDNVID+N + Sbjct: 545 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 604 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A +N +RAIGLG G+ L I + + EA + +DE E I++ I AS+ELA+ Sbjct: 605 PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK 664 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762 E+G YS F+GS W G E R P W EL +V G+RN+ Sbjct: 665 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 709 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+AP + A I G + SIDP Y Y + V L E W Sbjct: 710 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLE-----TWP----- 759 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881 Y G A+++D + +RRQ+ +DQ+ S N Y+ PS Sbjct: 760 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 797 Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905 L ++ AW GLKTTYY+RS Sbjct: 798 IRASTLLDLHMTAWREGLKTTYYVRS 823 >gi|266623613|ref|ZP_06116548.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium hathewayi DSM 13479] gi|288864590|gb|EFC96888.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium hathewayi DSM 13479] Length = 640 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 225/656 (34%), Positives = 332/656 (50%), Gaps = 93/656 (14%) Query: 289 RDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLA-LKETEKEKRAVEFYNLL 346 RD F Y GL++L RY + + +E PQ F+ +A+ LA L++ ++ + FY++L Sbjct: 30 RDQLFTYSGLELLLSRYVIRSRENVPLESPQEMFLGIALHLAMLEKNDRLEWVRRFYDML 89 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S+ +TPTL N+ + QLSSCF+ TVPD L GI+ ++ A ++K+ GG+G + Sbjct: 90 STLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGLYFGK 149 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+GAV YL+ WH D+ EFL LR Sbjct: 150 VRAAGSAIRGFKGAAGGVIRWIKLANDTAVAVDQLGVRQGAVAVYLDAWHKDLPEFLALR 209 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFE 519 N GDDR + HD+ A P+LF K ++ A W L P E+ L D YG+E+E Sbjct: 210 TNNGDDRMKAHDVFPAVCYPNLFWKLAKEDIDADWYLMCPHEILTVKGYSLEDSYGREWE 269 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y +E AD K R I L R +L ETG P+ +D N +P H G++ Sbjct: 270 ERY--WECVADHRIHK--RVIPVKELVRLILKSAVETGTPFTFNRDLVNEANPNSHKGII 325 Query: 580 HSSNLCTEITLNSSSEETA-----------------------VCNLGSINLLAHFANNQF 616 + SNLCTEI N S E VCNL S++L N+ Sbjct: 326 YCSNLCTEIAQNMSPVEQVEQRIETVDGETVVVTVTKPGDFVVCNLASLSLGKIDVTNRE 385 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + +L + AVR LDNVID+N + A+ +N +R IGLG+ G+ L I + S Sbjct: 386 EVTRLT---QYAVRALDNVIDLNFFPVPYARINNMKYRPIGLGVSGYHHMLAKNGISWES 442 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 E + D E+I++ AI AS + A+E+G Y F+GS W G + Sbjct: 443 EEHLAFTDRVFEWINYAAIEASCDNAREKGCYELFEGSDWQTGAY--------------F 488 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + W LK++ GMRN +AIAPT++ + + G + +DP Sbjct: 489 EKRKYHSEEWLRLKEKTAANGMRNGWLIAIAPTSSTSMLAGTTAGLDP------------ 536 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK----IHATAFEID 852 ++N + + E K G + R+ DL + A ID Sbjct: 537 ----IMNRYYLEEKKN-------------------GLVPRVAPDLSPETFWQYKNAHYID 573 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 W + + RQ+ +DQAQS+NLY+ +E + +++ +Y AW G+KT YY+RSRS Sbjct: 574 QQWSVRAGGIRQRHVDQAQSMNLYITNEYTLRQVLNLYILAWECGVKTIYYIRSRS 629 >gi|21244792|ref|NP_644374.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas axonopodis pv. citri str. 306] gi|21110490|gb|AAM38910.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas axonopodis pv. citri str. 306] Length = 832 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 251/768 (32%), Positives = 377/768 (49%), Gaps = 112/768 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + ++ P + AR L +L YK+ + ++ Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 162 Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 Y + ++E + R +L D +L+ ++ ERD F Y GL +L Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 219 Query: 304 RYFLHINGSR--IEMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMC 353 RY L + SR E+PQ ++ +A+ L E +E+R E Y LS+ + Sbjct: 220 RY-LATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTV 278 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ Sbjct: 279 ATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSA 338 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R Sbjct: 339 IRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQR 398 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQ 528 R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F A ++ R+ Sbjct: 399 LRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRK 458 Query: 529 ADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLC Sbjct: 459 YEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLC 518 Query: 586 TEITLNSS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKL 621 TEI N S + + VCNL SINL +Q D D L Sbjct: 519 TEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVL 578 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + Sbjct: 579 ERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAED 638 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 +DE E I++ I AS+ELA+E+G YS F+GS W G E R Sbjct: 639 YSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARD 683 Query: 742 SRLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 684 YNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRP 743 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 V L E W Y G A+++D + Sbjct: 744 VAAPGLSLE-----TWP-------YYEKG------------------AYKVDQFASVRQN 773 Query: 861 SRRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 +RRQ+ +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 774 ARRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 819 >gi|71901121|ref|ZP_00683228.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|71729126|gb|EAO31250.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] Length = 830 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 249/764 (32%), Positives = 372/764 (48%), Gaps = 107/764 (14%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ DL LI + + ++ P + AR L +L YK+ + ++ Sbjct: 112 DSVNADDLVDLLIREAESRVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163 Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 Y + ++E + R ++ S +L+ + ERD F Y GL +L R Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221 Query: 305 YF-LHINGSRIEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCST 355 Y + E+PQ ++ +A+ L E +E+R E Y LS+ + +T Sbjct: 222 YLATDASCGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVAT 281 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTL N+G + QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I Sbjct: 282 PTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIR 341 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 G S GV+P++K N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R R Sbjct: 342 GVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLR 401 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQAD 530 HD+ T+ IPDLFM+ V + W LF P EV L D Y ++ ++ R+ + Sbjct: 402 AHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYE 461 Query: 531 R--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + ++ RK + A+ ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCTE Sbjct: 462 DVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTE 521 Query: 588 ITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLASTI 625 I N + + + VCNL SIN L Q D D L I Sbjct: 522 ILQNMTPTRLIQEMISGNQIVTTKHAGDFVVCNLSSIN-LGRAITVQADLLGADVLERLI 580 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 VR+LDNVID+N + +A +N +RAIGLG G+ L I + S EA + +D Sbjct: 581 PIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDA 640 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E I++ I AS+ELA+E+G Y+ F GS W G E R P Sbjct: 641 LYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNSP 685 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + VV Sbjct: 686 QWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP 745 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L D W Y G A+++D I +RRQ Sbjct: 746 GL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARRQ 775 Query: 865 KWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ+ S N Y+ PS L ++ AW GLKTTYY+RS Sbjct: 776 RHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817 >gi|212638242|ref|YP_002314762.1| ribonucleotide-diphosphate reductase subunit alpha [Anoxybacillus flavithermus WK1] gi|212559722|gb|ACJ32777.1| Ribonucleotide reductase, alpha subunit [Anoxybacillus flavithermus WK1] Length = 758 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 249/778 (32%), Positives = 380/778 (48%), Gaps = 100/778 (12%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREV-L 233 +SS+ + T +++ S D+ LI ++ I E P++ V AR L++L E + Sbjct: 28 LSSERYIERTIRSLTYTKSHDDMMNKLILNALDEITVEQPDWTFVAARLYLQQLYNEAAI 87 Query: 234 TTVYKKPQKATH-HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 Y + +E+Q + + G+ + E +L + ++D Sbjct: 88 NRGYDVSDTYRYFYELQTML-------VNLGIYDPFVLERYTKEELQEAGTWIDPKKDEQ 140 Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSS 348 F Y+GL+ L DRY +G E+PQ F+ +A+ L + E+ KEKR E Y LS+ Sbjct: 141 FTYIGLKTLVDRYLAKGYDGEIYELPQERFLTIALTLMVNES-KEKRMELVKEAYWALSN 199 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G + QLSSCF+ TV D L GI+ + + A L+K GG+G +R Sbjct: 200 QYMTVATPTYANAGKSYGQLSSCFIDTVDDSLIGIYESNTDVARLSKGGGGIGVYLGKIR 259 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 + I G G S GVIP+++ N+TAV+V+Q G R+G++ YL+ WH D+ FLD + N Sbjct: 260 ARNSDIKGFKGVSSGVIPWMRQLNNTAVSVDQLGTRQGSIAVYLDVWHKDIFSFLDAKLN 319 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-------------LHDLYG 515 GD+R++ HD+ IPDLFM++V + W LF P EV L D Y Sbjct: 320 NGDERQKCHDLFYGVCIPDLFMEQVEKRGDWYLFDPHEVKKVMGWKDTDGNPLGLEDFYD 379 Query: 516 KEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +E E YE + E+ R + A+ + +++L ETG P++ ++D N +P Sbjct: 380 EERGRGSFREKYEECINHPELSKER-VPAIEIMKRILKSQLETGTPYMFYRDEANRMNPN 438 Query: 574 QHVGVVHSSNLCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANN 614 +H G+++SSNLCTEI N S + VCNL SI+L + Sbjct: 439 KHAGMIYSSNLCTEIMQNMSPTTVTKEYTQDGEIIIHKKPGDFVVCNLSSIHLARAVQD- 497 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D L I VR+LDNVID+N + IE +A +N +RAIGLG + L L I Sbjct: 498 ----DVLERLIPIQVRMLDNVIDLNENRIEVLQAVMTNKKYRAIGLGAFSWHHLLALKGI 553 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 + S E+V+ AD+ E I++ I AS+ELA+E+GAY +F GS W G + Sbjct: 554 KWNSEESVDFADKLFEKIAYLTIRASMELAKEKGAYPAFAGSDWHTGKY----------- 602 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D + L WDELK++V G+RN MA AP A+ + + + S DP + LY + Sbjct: 603 FDLRGYHSHDELDWDELKQQVMRHGIRNGYLMAPAPNASTSVLANGTASCDPVFNRLYFE 662 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + V V +L + W + A+E+D Sbjct: 663 EKKNYKIPVT----VPDLNAKTFW---------------------------FYENAYEVD 691 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 I + RQK +DQ+ S NLY+ + K L ++ AW LK+TYY+RS + T Sbjct: 692 QKMSIRQNAARQKHVDQSLSFNLYVYNTIKAKDLLDLHLTAWKERLKSTYYVRSTAVT 749 >gi|170077964|ref|YP_001734602.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002] gi|169885633|gb|ACA99346.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002] Length = 780 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 242/803 (30%), Positives = 382/803 (47%), Gaps = 96/803 (11%) Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN- 188 A S S++ P P+ ++ G + R+ +V+ AC L+ ++ I L K Sbjct: 29 ATYSASRAVTPTKPQTYVIKRSGKRAPLDVTRIRNVVQWACQDLE--ANTIELEAGLKTR 86 Query: 189 MYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV-YKKPQKATHH 246 + DG++ +++ LI + + +EP++ V R + L ++ L Y+ Q Sbjct: 87 LKDGVTTREIQENLIQCALEMCSPEEPDWRYVAGRLHIWSLWKDTLVARGYQYGQ----- 141 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL--AND-LKYERDFAFEYLGLQILYD 303 YP+ + + V A+ E ++ + L AN + + D ++Y G +L Sbjct: 142 -----YPQL----VADKVAAKAYDERLLQYSAAELEIANGWINPDWDMDYDYAGAVLLTK 192 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNS 361 RY L E+PQ F+ A+ LAL E + K A +FY ++ +TP L N Sbjct: 193 RYLLDD-----ELPQEAFLTCALLLALPEKPENRLKWAKKFYEAIAQRQISLATPILANL 247 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 + LSSCF+ + D+L IF + A ++K GG+G + + +R G+ + G S Sbjct: 248 RIPNGSLSSCFIIGMEDNLESIFREITNAARISKNGGGVGCNVSRIRATGSRVMGKANAS 307 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 GVIP++K+ NDTA+AVNQGG+R GA+ L+ WH+DV EFL+++ GD RR+ +D+ Sbjct: 308 GGVIPWIKLLNDTAIAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENGDQRRKAYDVFP 367 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKV 536 + D FM+RV WTL P EV DL L+G++F+ AY E D+ +IK+ Sbjct: 368 QLVVTDEFMRRVQHKEAWTLVDPYEVKENLGIDLAALWGEKFDAAYRQIEASLDQ-DIKL 426 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 ++K+ A L+++++ ETG P+I FKD N +P QH G + NLC E N + Sbjct: 427 YKKVDARHLFKEIMRSQIETGMPYIAFKDTINRANPNQHEGYIPGVNLCVESFSNVVPGQ 486 Query: 597 TA-VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 A CNL S+NL AN + D+LA AVR+LDN I+I E + N +R Sbjct: 487 LAHTCNLDSLNL----AN--IEADELADACEVAVRILDNTIEITNTPFEDSSIHNQRYRT 540 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G MG L + Y + EA+ D E I ++ SV LAQERGAY F GS Sbjct: 541 IGVGAMGLADWLAKNKLSYKNIEAI---DRLFEDIGYYCTRTSVNLAQERGAYPGFPGSE 597 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G I + + + A++R W+ L + V+ G+RNS+ AIAP + + + Sbjct: 598 WSKGHL-IGAKPITWYRENAHAVDR-----WERLSEDVRKYGIRNSHITAIAPNTSSSLV 651 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S SI P+Y + G + F+ + W Sbjct: 652 QGCSASILPTYSKFFYDKWAKGTVPIAPPFI-----GKSFW------------------- 687 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SG 882 + +D ++++ + QKWID S+ L + +EP Sbjct: 688 --------FYQENKSMDQRLVVKAVATMQKWIDTGISMELIFNLNQGIYFPNEPERALKA 739 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905 K + I AW G K YY+R+ Sbjct: 740 KDIFEILMLAWAEGCKAIYYIRT 762 >gi|197247241|gb|AAI65359.1| Rrm1 protein [Danio rerio] Length = 509 Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 189/501 (37%), Positives = 285/501 (56%), Gaps = 37/501 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T + TL K P+YA + AR Sbjct: 33 IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAEIAATLTTKHPDYAILAARI 92 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280 + L +E +K M+ LY Y+ + +R H M+ D+V Sbjct: 93 AVSNLHKET--------KKVFSEVMEDLY-----NYVNP-LNSR--HSPMISKETLDIVL 136 Query: 281 LAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 D + Y+RDF++ + G + L Y L ING E PQ MRV++G+ E Sbjct: 137 ANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKED 193 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++ Sbjct: 194 IAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALIS 253 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 254 KSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLE 313 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+L P++ L + Sbjct: 314 PWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDEC 373 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G+EFE Y YE++ + R + A LW ++ ETG P++ +KD CN +S Q Sbjct: 374 WGEEFEKLYAKYEQEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQ 428 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632 Q++G + SNLCTEI +S++E AVCNL SI L + + + FD+ KLAS + V+ L Sbjct: 429 QNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNL 488 Query: 633 DNVIDINCHTIEKAKKSNHTH 653 + +IDIN + ++ +S H Sbjct: 489 NKIIDINYYPVKDGCRSRSLH 509 >gi|27882097|gb|AAH44356.1| Rrm1 protein [Danio rerio] Length = 498 Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 189/501 (37%), Positives = 285/501 (56%), Gaps = 37/501 (7%) Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 +++ C GL V + + + +Y G++ +L+T + TL K P+YA + AR Sbjct: 22 IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAEIAATLTTKHPDYAILAARI 81 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280 + L +E +K M+ LY Y+ + +R H M+ D+V Sbjct: 82 AVSNLHKET--------KKVFSEVMEDLY-----NYVNP-LNSR--HSPMISKETLDIVL 125 Query: 281 LAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 D + Y+RDF++ + G + L Y L ING E PQ MRV++G+ E Sbjct: 126 ANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKED 182 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394 A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++ Sbjct: 183 IAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALIS 242 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QGG KR GA YLE Sbjct: 243 KSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLE 302 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+L P++ L + Sbjct: 303 PWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDEC 362 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G+EFE Y YE++ + R + A LW ++ ETG P++ +KD CN +S Q Sbjct: 363 WGEEFEKLYAKYEQEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQ 417 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632 Q++G + SNLCTEI +S++E AVCNL SI L + + + FD+ KLAS + V+ L Sbjct: 418 QNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNL 477 Query: 633 DNVIDINCHTIEKAKKSNHTH 653 + +IDIN + ++ +S H Sbjct: 478 NKIIDINYYPVKDGCRSRSLH 498 >gi|319790521|ref|YP_004152154.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio ammonificans HB-1] gi|317115023|gb|ADU97513.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio ammonificans HB-1] Length = 764 Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 229/777 (29%), Positives = 386/777 (49%), Gaps = 81/777 (10%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAK 218 +++ ++ A GL V++ + ++ + +DG++ + A+I ++ +L +EP++ Sbjct: 19 EKIRKVINWAAQGLA-VNTLKLEAKLKLHFFDGITTRQIHEAVINTALSLTTPEEPDWRI 77 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + R + L +EV ++ + K + Y + +++G+ + L E + +L Sbjct: 78 LAGRLFIFNLYKEV--SIKRGTSKLAYVGGGEEYLKVVKDLVDKGLYTKELLEKYSEEEL 135 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 V + +K DF ++Y G +L RY + E+PQ FM +A+ LA+ E ++++ Sbjct: 136 VEAGDYIKQSYDFLYDYAGANLLARRYLCIYEDTPFELPQEMFMTIALMLAINEPKEKRM 195 Query: 339 AV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 A +FY+L++ +TP L N + LSSCF+T + D+L I + A ++K Sbjct: 196 AFVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDNLDSIMYTANQVAQISKR 255 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 +GG+G + + +R G+ I G S GV+P++K+ ND AVAVNQ GKR GAV L+ WH Sbjct: 256 AGGVGVNLSRIRAQGSWIKKVFGASGGVVPWVKILNDVAVAVNQEGKRAGAVTVALDVWH 315 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLH 511 +DV +FL+L+ GD RR+ D+ IPDLFM+RV N W L P EV L+ Sbjct: 316 LDVYDFLELKTENGDLRRKAFDIFPQLVIPDLFMERVKLNQEWLLVDPYEVERKFGYRLY 375 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 +L+G EFE AY + E ++D+ +K +++ A L++++L TG P+I FKD N + Sbjct: 376 ELWGDEFEKAYTHVEAESDKLRLK--KRVKARELFKEILKTQVATGLPYIFFKDTANRLN 433 Query: 572 PQQHVGVVHSSNLCTEITLN-----------------SSSEETAV---CNLGSINLLAHF 611 P +H G + + NLC E N + EE + CNL S+N LA+ Sbjct: 434 PLKHDGYIGNGNLCMESFSNFRPSKGFKTYTDGKRIINEVEECGLVHTCNLLSVN-LANI 492 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N++ +L +R AVR+LDN I++ I +++ N +R IG+G +G L Sbjct: 493 ENDE----ELEEAVRAAVRILDNTIELTSSPIPESELHNRRYRTIGIGTLGLADYLAKRE 548 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 IPY +++ + DE E I+++ I SV LA+ERGA+ F+GS W +G+ G L E Sbjct: 549 IPYGR-QSLAVIDELYEKIAYYGIDESVNLAKERGAFPLFEGSDWSKGIIIGKDAGYLLE 607 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + W +L ++KT G+RN AIAP + + G + + P + Y+ Sbjct: 608 -------KTSLKEKWLKLLSKLKTYGIRNGQLFAIAPNTSSGLLQGATPGVLPPFSRFYI 660 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 N + +L + W + + + Sbjct: 661 DKNQKQAVPICPPYL-----KEKFW---------------------------FYRESKTM 688 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ---AWLMGLKTTYYLRS 905 D +I+ S QKW+D S+ L + G + IY AW G+KT YY+R+ Sbjct: 689 DQKEVIDVISTIQKWVDSGISMELLFNLNLGIRARDIYETFLYAWEKGIKTVYYVRT 745 >gi|310830453|ref|YP_003965554.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] gi|309249920|gb|ADO59486.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] Length = 748 Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 254/779 (32%), Positives = 382/779 (49%), Gaps = 114/779 (14%) Query: 193 LSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREV-LTTVYKKPQKATHHEMQC 250 ++ +D+ + ++ LI +EP++ + + + KL +E L YK + Sbjct: 14 INAADITRTIYMTAVELISIEEPDWTYIASAAYVNKLYKEAALHRGYKSYPAKPYGSFST 73 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 L + C+ G+ R L E + +L+ L + Y++D F+Y+G+ L +RY Sbjct: 74 LIKQLVCK----GIYKRELIEEFTEQELLKLEETIDYKKDKLFDYIGIVTLQERYLASDY 129 Query: 310 NGSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEF---------------YNLLSSFH 350 +G +E+PQ M +AM L + EK K +F Y +S + Sbjct: 130 DGKTMELPQERLMLIAMDLMIDAGKMLDEKGKPTDDFLPGGRKERLSYIQEAYWAMSHLY 189 Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 +TPTL N+G + QLSSCF+ TV DDL IF + + A L+K GG+G VR Sbjct: 190 MTTATPTLSNAGKAKGGQLSSCFIDTVDDDLRSIFDSNTDVARLSKVGGGIGVYVGKVRS 249 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G KS G++P+++ N+TAV+V+Q G RKG++ YL+ WH D+ FLDL+ N Sbjct: 250 RGAKIRGYEHKSSGLVPWIRQLNNTAVSVDQLGTRKGSIAVYLDVWHKDILAFLDLKLNN 309 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FE 519 GD+R R HD+ T IPDLFM+RV + + LF P EV L D Y +E F Sbjct: 310 GDERMRAHDIFTGVCIPDLFMERVERREEFYLFDPHEVRTFMGWSLEDYYDEEPGDGTFR 369 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y+ + + A+ + ++M+ ETG P++ ++D N +P + G++ Sbjct: 370 RKYQECVDHPLLSRV----ALPAIDIMKRMMKAQLETGTPYMFYRDTVNRANPNKAHGII 425 Query: 580 HSSNLCTEITLNSSSEETA-----------------------VCNLGSINLLAHFANNQF 616 +SSNLC EI N S+ A VCNL SI+L Sbjct: 426 YSSNLCVEIMQNMSATTVAEEKLVEIDGEKMIMTLKRPGDFVVCNLASISLARAVKEGV- 484 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 L I +R+LDNVID+N + +A +N +RAIGLG G L LL I + S Sbjct: 485 ----LERLIPIMIRMLDNVIDLNQIDVLQATHTNQKYRAIGLGTSGLHHLLALLGIMWES 540 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E D E+I++ AI AS++LA+E+G+Y FKGS W+ G + D RD Sbjct: 541 EEANEYNDHLYEWIAYLAIKASMQLAKEKGSYPLFKGSEWETGKYFSD--------RDYT 592 Query: 737 AMNRTSRL----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + R + W EL +VK G+RN +AIAPT + + I G + SIDP Y+ L + Sbjct: 593 SGKREGKFVTTEQWIELANQVKKHGIRNGYLLAIAPTGSTSIIAGTTASIDPIYKLLTYQ 652 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + + + N DL N++ I + AF +D Sbjct: 653 EKTT--YKIANP----------------APDL--------NVKTI----QYYRKNAFLLD 682 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLKTTYYLRSRSAT 909 + I + RQ+ IDQ+QS NLY+ P K DF ++ QAW G+KTTYY+RS++ T Sbjct: 683 QLASIRMNATRQRHIDQSQSFNLYI-RPDIKAKDFLVLHLQAWKSGVKTTYYVRSQALT 740 >gi|239628851|ref|ZP_04671882.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales bacterium 1_7_47_FAA] gi|239518997|gb|EEQ58863.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales bacterium 1_7_47FAA] Length = 751 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 232/743 (31%), Positives = 361/743 (48%), Gaps = 97/743 (13%) Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ALI S+ L +E P + AR + +EV + + + +++ L Sbjct: 59 ALIRSAAELTSREAPRWEFAAARLRYCQFEQEVKERLGTLGIASLYDKLKYL-------- 110 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQ 318 ++G+ + E+ ++ ++ ER+ F Y GL +L RY + +E PQ Sbjct: 111 TDQGLYGAYILENYSREEIAQAQGFIREERNCLFTYAGLDLLLKRYVIQDRERHGLETPQ 170 Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ +A+ LA+KE + + + FY++LS +TPTL N+ + QLSSCF+ TV Sbjct: 171 EMYLGIALHLAMKEKKDVRMEWVRRFYDMLSQIKATMATPTLSNARKPYHQLSSCFIDTV 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ NDTAV Sbjct: 231 PDSLEGIYRSVDNFAQVSKFGGGMGLYFGKVRATGSSIRGFKGAAGGVIRWIKLVNDTAV 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495 AV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ PDLF K + Sbjct: 291 AVDQLGMRQGAAAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPGVCYPDLFWKLAEES 350 Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 + W L P E+ L D YG+E+E Y + + + V K + R + Sbjct: 351 LDQDWYLMCPHEIEAVKGYCLEDSYGEEWEERYWDCVKDQRISKRTVLLK----DVVRLI 406 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597 L ETG P+ +D N +P H G+++ SNLCTEI N S E+ Sbjct: 407 LKSAVETGTPFAFNRDIVNRANPNSHKGMIYCSNLCTEIAQNMSPVESVSTEILNREGDT 466 Query: 598 -----------AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEK 645 VCNL S+ L N D ++ + TAVR LDNVID+N + + Sbjct: 467 VIVNTTRPGDFVVCNLASLCL----GNIDVTSDSEVEEIVSTAVRALDNVIDLNFYPLPY 522 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 AK +N +R+IGLG+ G+ L I + S E + AD+ E I++ AI AS L E+ Sbjct: 523 AKVTNARYRSIGLGVSGYHHMLAKHRIRWESEEHLAFADQVFERINYAAIRASSALGAEK 582 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G+Y F+GS W G + WD L +V GMRN+ MA Sbjct: 583 GSYEYFEGSQWQSGEY--------------FKKRGYEGGRWDGLAAQVAAQGMRNAWLMA 628 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 +APT++ + + G + +DP + +++ + + + EL W Sbjct: 629 VAPTSSTSILSGTTAGLDPVMKRFFLEEKKNS----IMPRVAPELDISTFW--------- 675 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 ++ +A+ ID + + +A RQ+ IDQAQS+NLY+ +E + ++ Sbjct: 676 ------------------LYKSAYTIDQTYTVRAAGVRQRHIDQAQSVNLYITNEYTMRQ 717 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907 L +Y AW G+KT YY+RS+S Sbjct: 718 LLNLYILAWEQGVKTIYYVRSQS 740 >gi|215275537|sp|P0C8H9|RIR1_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit Length = 778 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 222/740 (30%), Positives = 373/740 (50%), Gaps = 47/740 (6%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y+ + AR + +L + ++ K + L P++ ++ K + + +S + Sbjct: 50 DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332 D Y RD+ LG++ + + Y L + +G +E PQ +MRVA M + + Sbjct: 106 D-----------YNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 K + Y+LLS ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ + Sbjct: 155 VVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++ GG+G + +R + I G+ +S G+ ++ + N + NQGG R GA YL Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274 Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503 E WH D+ FL+ L+ + R ++ W+PDLFM+ + N G W LFS Sbjct: 275 ELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYLFS 334 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLFET----G 557 PD+ +LH ++ E +EN R+ + + ++ + V ++++ F+T G Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTVIQVG 393 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614 +P+I FKD N +S HVG + +SNLC E+T+ E VCNL ++NL A N Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIREN 453 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +DY L LDN+ID + E ++SN HR IG+G+ G L I + Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKIKF 513 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731 SPEA+ + + + + A+ S+ELA+E+G++ SF GS +G+ D G L Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLIP 573 Query: 732 VRDELAMNRT----SRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSY 786 +E T +R W +L R+ I G+RN A+ PTAT +N G ++ +P Sbjct: 574 SWEERVAQTTQGVLTRKSWRQL--RLAAIQGVRNGYLTALMPTATSSNSTGKNECFEPFT 631 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 NLY + +SG+F V+N +L+++LK+ +LW EA+ L GSI +I IP +++ + Sbjct: 632 SNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQHILDIPAEIRDRYK 691 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + W GL T +YY Sbjct: 692 TSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHF 751 Query: 906 RSATSVEKSTLKGVDGKLNA 925 +K ++ + NA Sbjct: 752 SPGAGTQKKIIRNSEKACNA 771 >gi|215275536|sp|P0C8H8|RIR1_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit Length = 778 Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 222/744 (29%), Positives = 370/744 (49%), Gaps = 55/744 (7%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y+ + AR + +L + ++ K + L P++ ++ K + + +S + Sbjct: 50 DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332 D Y RD+ LG++ + + Y L + +G +E PQ +MRVA M + + Sbjct: 106 D-----------YSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 K + Y+LLS ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ + Sbjct: 155 VVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++ GG+G + +R + I G+ +S G+ ++ + N + NQGG R GA YL Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274 Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503 E WH D+ FL+ L+ + R ++ W+PDLFM+ + N G W LFS Sbjct: 275 ELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYLFS 334 Query: 504 PDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 PD+ +LH ++ +EF+ Y Y + + ++I + W K + Sbjct: 335 PDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEI--IKAWFKTV--- 389 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAH 610 + G+P+I FKD N +S HVG + +SNLC E+T+ E VCNL ++NL A Sbjct: 390 IQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAF 449 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +DY L LDN+ID + E ++SN HR IG+G+ G L Sbjct: 450 IRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASL 509 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIG 727 I + SPEA+ + + + + A+ S+ELA+E+G++ SF GS +G+ D G Sbjct: 510 KIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCG 569 Query: 728 LLAEVRDELAMNRT----SRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSI 782 L +E T +R W +L R+ I G+RN A+ PTAT +N G ++ Sbjct: 570 DLIPSWEERVAQTTQGVLTRKSWRQL--RLAAIQGVRNGYLTALMPTATSSNSTGKNECF 627 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P NLY + +SG+F V+N +L+++LK+ +LW EA+ L GSI +I IP +++ Sbjct: 628 EPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQHILDIPAEIR 687 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 + T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + W GL T +Y Sbjct: 688 DRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSY 747 Query: 902 YLRSRSATSVEKSTLKGVDGKLNA 925 Y +K ++ + NA Sbjct: 748 YCHFSPGAGTQKKIIRNSEKACNA 771 >gi|301792342|ref|XP_002931138.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like, partial [Ailuropoda melanoleuca] Length = 477 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 176/452 (38%), Positives = 269/452 (59%), Gaps = 17/452 (3%) Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE Sbjct: 1 KNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYE 60 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +Q +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCT Sbjct: 61 KQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCT 115 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 EI +S +E AVCNL S+ L + + +D+ KLA + VR L+ +IDIN + + + Sbjct: 116 EIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPE 175 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ AS +LA+E Sbjct: 176 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREH 235 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y +++GS +G+ D + T W LK+++ G+RNS +A Sbjct: 236 GPYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIA 285 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW+E M + + Sbjct: 286 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQII 345 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL Sbjct: 346 ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL 405 Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 ++ W GLKT YYLR+R A + + TL Sbjct: 406 TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 437 >gi|9628153|ref|NP_042739.1| ribonucleotide reductase large subunit [African swine fever virus] gi|1172937|sp|P42491|RIR1_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|780415|gb|AAA65275.1| ribonucleotide reductase large subunit [African swine fever virus] gi|162849428|emb|CAN10393.1| Ribonucleotide reductase large subunit [African swine fever virus OURT 88/3] gi|291289489|emb|CBH29146.1| BA71V-F778R [African swine fever virus E75] gi|1097434|prf||2113434AU ribonucleotide reductase:SUBUNIT=large Length = 778 Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 219/739 (29%), Positives = 368/739 (49%), Gaps = 45/739 (6%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y+ + AR + +L + ++ K + L P++ ++ K + + +S + Sbjct: 50 DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332 D Y RD+ LG++ + + Y L + +G +E PQ +MRVA M + + Sbjct: 106 D-----------YNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 K + Y+LLS ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ + Sbjct: 155 VVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++ GG+G + +R + I G+ +S G+ ++ + N + NQGG R GA YL Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274 Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503 E WH D+ FL L+ + R ++ W+PDLFM+ + N G W LFS Sbjct: 275 ELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYLFS 334 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADR------GEIKVFRKISAVALWRKMLTMLFETG 557 PD+ +LH ++ E +EN R+ + E + +A + ++ + + G Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQVG 393 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614 +P+I FKD N +S HVG + +SNLC E+T+ E VCNL ++NL A N Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIREN 453 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +DY L LDN+ID + E ++SN HR IG+G+ G L + + Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKF 513 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731 SPEA+ + + + + A+ S+ELA+E+G++ SF GS +G+ D G L+ Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLSS 573 Query: 732 VRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +E T +R W +L+ G+RN A+ PTAT +N G ++ +P Sbjct: 574 SWEERVAQTTQGVLTRKSWWQLRLAAMQ-GVRNGYLTALMPTATSSNSTGKNECFEPFTS 632 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NLY + +SG+F V+N +L+++LK+ DLW EA+ L GSI +I IP +++ + T Sbjct: 633 NLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKT 692 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 + E++ L + A+ R ++ Q+ SLN Y EP ++ + W GL T +YY Sbjct: 693 SREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFS 752 Query: 907 SATSVEKSTLKGVDGKLNA 925 +K ++ + NA Sbjct: 753 PGAGTQKKIIRNSEKACNA 771 >gi|325294458|ref|YP_004280972.1| ribonucleoside-diphosphate reductase, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064906|gb|ADY72913.1| ribonucleoside-diphosphate reductase, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 765 Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 226/793 (28%), Positives = 395/793 (49%), Gaps = 81/793 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+ ++ +G+ N +++ ++ A GL+ V++ + S+ + YDG++ ++ +++ Sbjct: 3 KISVVKRNGSKEPLNIEKIRKVINWAAKGLE-VNTLKLESKLKLHFYDGITTREIHKSIV 61 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L +EP++ + R + L +EV ++ + K + Y + +E+ Sbjct: 62 NTALQLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYIGGGKEYLKVLKDLVEK 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G+ + +S + ++V + LK E DF ++Y G +L RY IE+PQ +M Sbjct: 120 GLYTNEIFKSYSEEEIVKAGDYLKLEYDFLYDYAGANLLAKRYLCIYEDYPIELPQEMYM 179 Query: 323 RVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ LA E+ ++ + +FY+L++ +TP L N + LSSCF+T + D L Sbjct: 180 SIALMLAKDESIDKRMTLVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDSL 239 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + A ++K +GG+G + + +R G+ I G S GV+P++++ ND AVAVNQ Sbjct: 240 DSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWIRILNDIAVAVNQ 299 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GKR GAV L+ WH+D+ +FL+L+ GD RR+ D+ IPDLFM+RV ++ W Sbjct: 300 EGKRAGAVTVALDVWHLDIFDFLELKTENGDLRRKAFDIFPQVVIPDLFMERVKKDKDWL 359 Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 L P EV L++L+G+EFE AY E+++ + ++K K + +++L Sbjct: 360 LVDPYEVEKKFGFRLYELWGEEFEKAYVQIEKESYKLKLKKKVKAKELL--KEILKTQVA 417 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN---SSSEETAV------------- 599 TG P+I FKD N +P +H G + + NLC E N S S +T + Sbjct: 418 TGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKSFKTTLEKGKIVSKVEKPG 477 Query: 600 ----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNL SIN LA+ N++ +L +RTAVR+LDN ID+ I ++K N +R Sbjct: 478 LVHTCNLLSIN-LANIENDK----ELEDVVRTAVRILDNTIDLTTSPILESKLHNDRYRT 532 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G +G L IPY +++ + DE E I+++ I S+ LA+ERG + +F+GS Sbjct: 533 IGIGTLGLADYLAKREIPYGK-QSLNLIDELYEKIAYYGIDESINLAKERGKFQAFEGSD 591 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+ ++ + R+ L + W + +++K G+RN AIAP + + Sbjct: 592 WSRGI-------IIGKDREYLLKKTHLKEKWLTVLEKLKKYGIRNGQLFAIAPNTSSGLL 644 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + + P + Y+ N + +L ++ W Y + N + Sbjct: 645 QGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KKKFWF--------YRESKFLNQK 691 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ---A 892 + D + I Q+W+D S+ L + G + I+ A Sbjct: 692 EVIDVISTI-------------------QRWVDSGISMELLFNLNLGVRAKDIFETVIYA 732 Query: 893 WLMGLKTTYYLRS 905 W G+KT YY+R+ Sbjct: 733 WEKGIKTIYYVRT 745 >gi|303398730|emb|CBW46711.1| F778R [African swine fever virus Georgia 2007/1] Length = 778 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 219/739 (29%), Positives = 368/739 (49%), Gaps = 45/739 (6%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y+ + AR + +L + ++ K + L P++ ++ K + + +S + Sbjct: 50 DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332 D Y RD+ LG++ + + Y L + +G +E PQ +MRVA M + Sbjct: 106 D-----------YSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGR 154 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 K + Y+LLS ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ + Sbjct: 155 VVNMKMILLTYDLLSQHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++ GG+G + +R + I G+ KS G+ ++ + N + NQGG R GA YL Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLKSNGIQNYIVLQNASQCYANQGGLRPGAYAVYL 274 Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503 E WH D+ FL L+ + R ++ W+PDLFM+ + N G W LFS Sbjct: 275 ELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGKWYLFS 334 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLFET----G 557 PD+ +LH ++ E +EN R+ + + ++ + V ++++ F+T G Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQVG 393 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614 +P+I FKD N +S HVG + +SNLC E+T+ E VCNL ++NL A N Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIREN 453 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +DY L LDN+ID + E ++SN HR IG+G+ G L + + Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKF 513 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731 SPEA+ + + + + A+ S+ELA+E+G++ SF GS +G+ D G L Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLVS 573 Query: 732 VRDELAMNRTSRL----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +E T + W +L+ G+RN A+ PTAT +N G ++ +P Sbjct: 574 SWEERVAQTTQGVLTPKRWSQLRLAAMQ-GLRNGYVTALMPTATSSNSTGKNECFEPFTS 632 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NLY + +SG+F V+N +L+++LK+ +LW EA+ L GSI +I IP +++ + T Sbjct: 633 NLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKT 692 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 + E++ L + A+ R ++ Q+ SLN Y EP ++ + W GL T +YY Sbjct: 693 SREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFS 752 Query: 907 SATSVEKSTLKGVDGKLNA 925 +K ++ + NA Sbjct: 753 PGAGTQKKIIRNSEKACNA 771 >gi|330984035|gb|EGH82138.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 260 Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 160/258 (62%), Positives = 204/258 (79%), Gaps = 5/258 (1%) Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 HIPYAS AVE AD+SME IS++AI AS +LA ERGAY+SF+GSLW QG+ P+DS +L Sbjct: 3 HIPYASEAAVEFADKSMEAISYYAIQASCDLADERGAYASFQGSLWSQGILPLDSQEILI 62 Query: 731 EVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 R E + ++++S L W +++RVK G+RNSN MAIAPTATI+NI GV+QSI+P+YQN Sbjct: 63 AHRGEQYIEVDKSSTLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVTQSIEPTYQN 121 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LYVKSN+SG+FTV+N LV +LK R LWD M+++LK++DGS+ I+R+P DLK ++ATA Sbjct: 122 LYVKSNLSGEFTVINPHLVIDLKARGLWDAVMVNELKHYDGSVQQIDRVPQDLKTLYATA 181 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FE++ WLI+ ASRRQKW+DQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +A Sbjct: 182 FEVEVRWLIDGASRRQKWLDQAQSLNLYIAGASGKKLDTAYRMAWYRGLKTTYYLRALAA 241 Query: 909 TSVEKSTLKGVDGKLNAV 926 TS EKST+ GKLNAV Sbjct: 242 TSTEKSTIN--TGKLNAV 257 >gi|162849255|emb|CAN10144.1| Ribonucleotide reductase large subunit [African swine fever virus Benin 97/1] Length = 778 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 218/739 (29%), Positives = 367/739 (49%), Gaps = 45/739 (6%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y+ + AR + +L + ++ K + L P++ ++ K + + +S + Sbjct: 50 DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332 D Y RD+ LG++ + + Y L + +G +E PQ +MRVA M + + Sbjct: 106 D-----------YNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 K + Y+LLS ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ + Sbjct: 155 VVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++ GG+G + +R + I G+ +S G+ ++ + N + NQGG R GA YL Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274 Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503 E WH D+ FL L+ + R ++ W+PDLFM+ + N G W LFS Sbjct: 275 ELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYLFS 334 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADR------GEIKVFRKISAVALWRKMLTMLFETG 557 PD+ +LH ++ E +EN R+ + E + +A + ++ + + G Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQVG 393 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614 +P+I FKD N +S HVG + +SNLC E+ + E VCNL ++NL A N Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVIIPCWEGDKAEQGVCNLAAVNLAAFIREN 453 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +DY L LDN+ID + E ++SN HR IG+G+ G L + + Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKF 513 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731 SPEA+ + + + + A+ S+ELA+E+G++ SF GS +G+ D G L+ Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLSS 573 Query: 732 VRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +E T +R W +L+ G+RN A+ PTAT +N G ++ +P Sbjct: 574 SWEERVAQTTQGVLTRKSWWQLRLAAMQ-GVRNGYLTALMPTATSSNSTGKNECFEPFTS 632 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NLY + +SG+F V+N +L+++LK+ DLW EA+ L GSI +I IP +++ + T Sbjct: 633 NLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKT 692 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 + E++ L + A+ R ++ Q+ SLN Y EP ++ + W GL T +YY Sbjct: 693 SREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFS 752 Query: 907 SATSVEKSTLKGVDGKLNA 925 +K ++ + NA Sbjct: 753 PGAGTQKKIIRNSEKACNA 771 >gi|67598375|ref|XP_666214.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide reductase R1 subunit) [Cryptosporidium hominis TU502] gi|54657163|gb|EAL35983.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide reductase R1 subunit) [Cryptosporidium hominis] Length = 526 Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 187/534 (35%), Positives = 301/534 (56%), Gaps = 29/534 (5%) Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + + G K + YLE WH+DV EF+++RKN G + R D+ A W+PDLFM+RV Sbjct: 5 GILIKVEGSVKVPIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVE 64 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ WTL PDE L D++G +F+ YE YE+Q RG + + A LW +L Sbjct: 65 KDQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQG-RGR----KTMKAQKLWFLILQAQI 119 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFA 612 ETG P+I +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L Sbjct: 120 ETGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSKDEVAVCNLASIGLPKFVDKN 179 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 N FD+DKL + R L+ +ID+ +++++ K SN HR +G+G+ G +L + Sbjct: 180 NKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKNSNLRHRPLGIGIQGLADCFMMLRM 239 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S A ++ + E I + A+ AS ELA++ G Y ++ GS +G+ D G+ + Sbjct: 240 PYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD- 298 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + WD LK R+ G+RNS ++ PTA+ + I G ++S +P N+Y + Sbjct: 299 --------SGLCDWDSLKDRISKYGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHR 350 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN L+N+L + LWD+ + ++ ++GSI NI IP+D+++++ T +EI Sbjct: 351 RVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIK 410 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-- 909 +I+ A+ R ++ Q+QSLN++++ + KL ++ W GLKT YYLR++SAT Sbjct: 411 QKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRP 470 Query: 910 ---SVEKSTLKGVDGKLNAVPVTDPNS---STHSLGI----PSSCTSDTECEVC 953 +V++ LK + +++ + T L P++ D EC +C Sbjct: 471 IQFTVDQQLLKSETKEKDSLETNKRQALEPETQKLIACPLRPTNMKDDEECMMC 524 >gi|237738279|ref|ZP_04568760.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium mortiferum ATCC 9817] gi|229420159|gb|EEO35206.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium mortiferum ATCC 9817] Length = 748 Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 221/748 (29%), Positives = 364/748 (48%), Gaps = 98/748 (13%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 +G++ ++ LI + ++ +E ++ V R L+ + REV H+ Sbjct: 47 EGITTKKIQETLITQAVAMVSFEESDWTYVAGRLLMMETEREVF------------HKRG 94 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYF 306 Y + F + + E V ++ + D+ ++ L + +RD ++Y G +L +RY Sbjct: 95 FSYGK-FLQTVRELVDKKIYDSRLGDYSDKEIEELGKYIAPDRDMMYDYAGANMLVNRYL 153 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 + G+ E+PQ FM +AM LA+ E + + A +FY+ LS +TP L N Sbjct: 154 IKYLGNTYELPQEVFMCIAMLLAINEKNRVEIAKKFYDALSLKKISLATPILANLRIPKG 213 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCF+T + D++ IF + A ++K GG+G + + +R + ++G S GV+P Sbjct: 214 NLSSCFITAIDDNIESIFYNIDTIAKISKNGGGVGVNISRIRAKNSMVNGYYNASGGVVP 273 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++++ NDTAVAVNQ G+R GAV L+TWH+D+E+FL+L+ GD R + +D+ + Sbjct: 274 WIRIINDTAVAVNQQGRRAGAVTVALDTWHLDIEKFLELQTENGDQRTKAYDIYPQVVVS 333 Query: 487 DLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 D+FMKRV ++ WTL P E+ +L +LYG EFE Y E + + ++I Sbjct: 334 DIFMKRVEKDEMWTLVDPYEIRMKYNLELCELYGVEFEKIYLQIENDET---LTLKKRIR 390 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSE 595 A L+++++ + ETG P+I FKD N + H+G++ + NLC E + N + E Sbjct: 391 ARELFKEIMKVQIETGMPYIFFKDRANRMNHNNHIGMIGNGNLCMESFSNFAPSKNYTEE 450 Query: 596 ETA-------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 E CNL S+NL + + D+L AVR+LDN ID+ Sbjct: 451 ENNGSGVRKVDLGMVHTCNLVSMNLA------EIERDELEDITGIAVRILDNTIDLTETP 504 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I ++ + N +R IG+G MG + + Y E+++ D E I+ + + AS LA Sbjct: 505 ILESDRHNSNYRTIGVGTMGLADFMAKEFMIY--EESLDEIDRLYEEIALYTVKASALLA 562 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRN 760 +ERGAY FK S+WD+GVF +D + S+ W+E+ VK G+RN Sbjct: 563 KERGAYPYFKNSMWDRGVFF---------QKDRVWYEENSQFADKWNEVFNLVKEYGLRN 613 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 A+AP + + + G + S++P++ +++ N G V V LK R W Sbjct: 614 GELSAVAPNTSTSLLMGATASVNPTFSRFFIEKNQKGAVPRV----VKYLKDR-AW---- 664 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + K + A + ++ SR KWI Q S+ L D Sbjct: 665 ----------------FYPEFKNVDAQTY-------VKMMSRIGKWITQGVSMELLFDLN 701 Query: 881 SGKKLDFIYR---QAWLMGLKTTYYLRS 905 + IY AW G K+ YY+R+ Sbjct: 702 KNIRAKDIYDTFLTAWKEGCKSVYYIRT 729 >gi|325261083|ref|ZP_08127821.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. D5] gi|324032537|gb|EGB93814.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. D5] Length = 763 Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 228/684 (33%), Positives = 346/684 (50%), Gaps = 93/684 (13%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQA 319 E+G+ + E ++ L +R+ F + L++L RY + G +E PQ Sbjct: 125 EQGLYGNYILEHYTQAEIEEFGTWLCAKRNDLFTFSSLELLLGRYTICGRAGEPLETPQE 184 Query: 320 FFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FM +AM LA+KE + V FY++LS+ +TPTL N+ + QLSSCF+ TVPD Sbjct: 185 MFMGIAMHLAMKEKQDRSAWVRRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ A ++KY GG+G + VR G+ I G G + GVI ++++ANDTAVAV Sbjct: 245 SLDGIYRSIDNFAKVSKYGGGMGMYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496 +Q G R+GAV YL+ WH D+ EFL+LR N GD+R + HD+ A PD F K+ + Sbjct: 305 DQLGVRQGAVAVYLDVWHRDLPEFLNLRTNNGDERMKAHDVFPAVCYPDYFWKQARDHID 364 Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 W L P E+ L D +G+ +E Y + R E R I + R ++ Sbjct: 365 GDWYLMCPHEILTIKGYALEDSFGEAWEEKYLD----CVRDERIRKRVIPIKDVLRLIIR 420 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594 ETG P+ +D N +P H GV++ SNLCTEI N S+ Sbjct: 421 SAVETGTPFAFNRDTVNKANPNGHKGVIYCSNLCTEIAQNMSAIELEEQRTEEVDGETVV 480 Query: 595 ------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 E VCNL S++L H + DY++L+ +AVR LDNVID+N + A+ Sbjct: 481 VTVTKPGEFVVCNLASLSL-GHI--DVEDYNELSYITESAVRALDNVIDLNFFPVPYARI 537 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +R +GLG+ G+ L I + S E ++ A++ I + A++AS +A+E+G+Y Sbjct: 538 NNQRYRPVGLGVSGYHHMLAKYGIRWESQEHLDFAEKVFSDIHYAAVNASCSIAEEKGSY 597 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 + F+GS W G + + L +R W++L RV G+RN +A AP Sbjct: 598 AYFEGSAWQTGEYF---------RQRNLVDDR-----WEQLAGRVAAFGLRNGYLLAAAP 643 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + +DP V+N + + E K Sbjct: 644 TSSTSIIAGTTAGLDP----------------VMNRYFLEEKKN---------------- 671 Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 G + R+ DL + A ID W + + RQ+ IDQAQS+NLY+ +E + + Sbjct: 672 ---GLMPRVAPDLSMETFWYYKNAHLIDQTWSVRACGIRQRHIDQAQSMNLYITNEYTFR 728 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 + +Y QAW G+KT YY+RSRS Sbjct: 729 GVLNLYLQAWEEGVKTIYYIRSRS 752 >gi|111184258|gb|ABH08178.1| HSPV074b [Horsepox virus] Length = 440 Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 179/449 (39%), Positives = 265/449 (59%), Gaps = 19/449 (4%) Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L L + D + GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP Sbjct: 10 LDVFLLNMMDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPM 69 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 L+V N+TA ++QGG KR G + YLE WH D+ FLD +KNTG+++ RT D+ A WIP Sbjct: 70 LRVYNNTARYMDQGGNKRPGVMAIYLEPWHSDIMAFLDFKKNTGNEKHRTRDLFIALWIP 129 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV + W+L DE S L++++G EFE Y +R+ EI+ + K A +W Sbjct: 130 DLFMKRVKDDGEWSLMCLDECSGLNNVWGDEFERLYTIRKRK----EIQDYMK--ARVVW 183 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 + ++ ETG P+I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ Sbjct: 184 KAIIESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVA 243 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 L + QFD+ KL ++ VR L+ +IDIN + I KA+ SN HR IG+G+ G A Sbjct: 244 LNMFVIDGQFDFFKLKDVVKVIVRNLNKIIDINYYPIPKAEISNKRHRPIGIGVQGLADA 303 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 LL+ P+ S EA ++ + E ++ A+ AS ELA++ G Y S+ S G+ D Sbjct: 304 FILLNYPFDSLEAQDLNKKIFE--TYGALDASCELAEKEGPYESYVRSYASNGILQYD-- 359 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 L V +L W LK ++KT G+RNS +A PTA+ A I ++S+ P Sbjct: 360 -LWNVVPSDL-------WNWKPLKDKIKTYGLRNSLLVAPMPTASTAQILENNESVKPYT 411 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 N+Y + +SG+F VVN L+ L ++ L Sbjct: 412 SNIYTRRVLSGEFQVVNPHLLRVLTEKKL 440 >gi|154505111|ref|ZP_02041849.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149] gi|153794590|gb|EDN77010.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149] Length = 763 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 242/736 (32%), Positives = 360/736 (48%), Gaps = 111/736 (15%) Query: 214 PNYAKVTARFLL---------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 P + + AR L E+ RRE L+ YKK T Q LY Y + Sbjct: 86 PKWEFIAARLLYFQFSFHLKQEETRRE-LSDFYKKLVYLTR---QNLYGSYILEHYSR-- 139 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323 + LL E+ LK ER+ F + GL +L RY + + +E PQ F+ Sbjct: 140 EELLLAETY-----------LKAERNNLFTFSGLDLLLKRYVIRTHDHIPLESPQEMFLG 188 Query: 324 VAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E V+ FY++LS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 189 IALHLAMNERNDRMLWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 248 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G++I G G + GVI ++++ NDTAVAV+Q G Sbjct: 249 IYRSIDNFAQVSKFGGGMGMYFGKVRASGSNIRGFEGAAGGVIRWIRLVNDTAVAVDQLG 308 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + + W Sbjct: 309 MRQGAVAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDMDQNWY 368 Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 L P E+ L D +G+E+E Y + + A + R ++ + R +L E Sbjct: 369 LMCPHEIFQAKGYHLEDYFGEEWERRYLDCVQDARISK----RTVTLKDIIRLVLRSAAE 424 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592 TG P+ +D N +P H G+++ SNLCTEI N + Sbjct: 425 TGTPFTFNRDTVNRMNPNGHAGMIYCSNLCTEIAQNMQAIEEVSKEVQTTDGDTVVVTVT 484 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 E VCNL S++ L H Y + + TAVR LDNVID+N + AK +N Sbjct: 485 RPGEFVVCNLASLS-LGHLPVTDTSY--MEEIVSTAVRALDNVIDLNFYPTPYAKLTNQK 541 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ L I + S E ++ AD E I++ AI AS LA+E+ +YS F Sbjct: 542 YRSIGLGVSGYHHMLAKHGIIWESEEHLKFADTVFETINYAAILASTNLAEEKESYSLFN 601 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + E RD + W L+K+V T GMRN+ +A+APT++ Sbjct: 602 GSDWQSGAY--------FEKRDYHSEK------WLALQKKVATQGMRNAYLLAVAPTSST 647 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + +DP + +++ V EL W Sbjct: 648 SIISGTTAGLDPILKRYFLEEKKGSMLPRV----APELSPATYW---------------- 687 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + A ID + I + RQ+ IDQAQS+N+Y+ ++ + +++ +Y + Sbjct: 688 -----------YYKNAHLIDQTYSIRACGVRQRHIDQAQSMNIYITNDFTMRQIFNLYLK 736 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 737 AWEEGVKTIYYVRSKS 752 >gi|237756543|ref|ZP_04585069.1| ribonucleoside-diphosphate reductase subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] gi|237691302|gb|EEP60384.1| ribonucleoside-diphosphate reductase subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] Length = 538 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 184/510 (36%), Positives = 282/510 (55%), Gaps = 58/510 (11%) Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ + A+ QGG+R+ + YL+ WH+DVE FLDLR+ TG+ RT +NTA W+PD Sbjct: 1 IKIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPD 60 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 M+R+ + LF P E L +G+EF Y+ +A+RGE+++++KI + ++ Sbjct: 61 EIMRRIKEGEPIYLFDPAECRQLVTAWGEEFAKKYQECIEKAERGELQLWKKIDSRDFYK 120 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 K L L +TGHPW+TFKD N +P GV++SSNLCTEI++ +S + TAVC L S+NL Sbjct: 121 KYLFKLAKTGHPWLTFKDAHNRHNPCPKYGVINSSNLCTEISIPNSPQSTAVCTLASVNL 180 Query: 608 LAH--------------------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 H F ++ D+DKL T+ T V LDN++D N + E+++ Sbjct: 181 ERHLKKVEREESNSNETTSHVSRFTSHVIDWDKLKDTLETMVVALDNILDKNFYPSEESR 240 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 ++ R IG+GLMGF AL L IPY S EAV++A E +F+ S ELA+ERGA Sbjct: 241 RNTMDLRPIGIGLMGFHEALIYLGIPYDSDEAVQLAKEIAKFMRETVYRKSEELAKERGA 300 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + +D +P RN+ +AIA Sbjct: 301 FPHYYEGNYD---YP----------------------------------PRRNAVLLAIA 323 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PTA+I+ I G S SID + N++ + +SG F VVN L+ L+++ +W+E ++ +K + Sbjct: 324 PTASISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEILEKIKAN 383 Query: 828 DGSIGNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 GSI I+ + + K++ TA+E+ P I+ A+ Q++IDQA S +LY++E ++ Sbjct: 384 QGSIQYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDME 443 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 IY AW GLK+TYY EK T+ Sbjct: 444 SIYMYAWEKGLKSTYYCFIDKTIKGEKYTM 473 >gi|323487826|ref|ZP_08093084.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus donghaensis MPA1U2] gi|323398560|gb|EGA91348.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus donghaensis MPA1U2] Length = 761 Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 246/772 (31%), Positives = 379/772 (49%), Gaps = 118/772 (15%) Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 E +L+++ + +P++ V A L YKK + + Y +++ + Sbjct: 45 EQSLLYALNHITMDQPDWTYVAAELYASDL--------YKKAAEHREYSASEKYGDFY-K 95 Query: 259 YIEE----GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 + E G+ ++ L S ++ L +++ ERD F Y+GL +L DRY G Sbjct: 96 LVHELTQVGIYSKELLFSYSQEEITELGQEIEPERDLLFNYIGLFLLADRYLAKDYEGRL 155 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E+PQ F+ +AM L E ++++ + E Y +S + +TPTL N+G QLSSC Sbjct: 156 FELPQERFLVIAMTLMQNEPKEQRLELVKEAYWAMSHLYMTVATPTLSNAGKSFGQLSSC 215 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 F+ TV D L GI+ + A L+K GG+G + VR LG+ I S GV+P++++ Sbjct: 216 FIDTVDDSLDGIYLNNWDIARLSKDGGGIGIYYGKVRALGSDIKKFKDNSSGVVPWIRLL 275 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDV-EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTAV+V+Q G+R+GAV YL+ +H D+ FLDL+ N GD+RR+ HD+ T IPDLFM Sbjct: 276 NDTAVSVDQLGQRQGAVAIYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVSIPDLFM 335 Query: 491 KRVTQN-------AGWTLFSPDEVS-------------DLHDLYG-KEFEIAYENYERQA 529 +R+ + W F P +V L D Y K+ + + Y+ Sbjct: 336 ERLQEKDENGRSIGEWHTFCPHQVKRVMGWKDANGNALGLEDFYDEKDTKYFSDKYQEAV 395 Query: 530 DRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-----VGVVHSS 582 D + K +R + +A R M++ L ETG P++ ++D N ++P +H + ++ S Sbjct: 396 DHLLLPRKTYRAMEIMA--RIMVSQL-ETGTPYMFYRDEVNRQNPNKHTRGRGLTSIYCS 452 Query: 583 NLCTEITLNSSSE--------------------ETAVCNLGSINLLAHFANNQFDYDKLA 622 NLCTEI N S+ + VCNL SINL + L Sbjct: 453 NLCTEIMQNMSATTIVKEYTDEDGNLVMIRKPGDFVVCNLSSINLPRAVKSG-----VLE 507 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + R+LDNVID+N ++ +A+ +N +RAIGLG G+ L L I + S +AVE Sbjct: 508 RLVPIQTRMLDNVIDLNTISVGQAEVTNKKYRAIGLGTFGWHHLLALEGIHWESEKAVEF 567 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 AD+ E I++ I AS++LA+E+GA+S F GS W G + E R N TS Sbjct: 568 ADKLYEEIAYQTIRASMQLAEEKGAFSQFSGSEWHTGEY--------FERR-----NYTS 614 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W++L+++V T G+RN MA+AP ++ A I G + IDP Y Y + + F V Sbjct: 615 E-RWNDLQQQVATTGVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEYAEEKKNFKFKVT 673 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 DL +H R H +D W I + Sbjct: 674 ------------------APDLDHHTYDFYRRSR--------HV----LDQKWSIRQNAA 703 Query: 863 RQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 RQ+ IDQ+ S N Y+ K+L ++ +AW LKTTYY+RS S +E+ Sbjct: 704 RQRHIDQSISFNFYVPHTIKAKELLDLHLEAWKQNLKTTYYVRSTSQAEIEE 755 >gi|215275535|sp|P0C8H7|RIR1_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit Length = 779 Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 207/677 (30%), Positives = 339/677 (50%), Gaps = 46/677 (6%) Query: 285 LKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKETEKEKRAVEF 342 + Y RD+ LG++ + + Y L + +G +E PQ +MRVA M + K + Sbjct: 106 IDYSRDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGRVVNMKMILLT 165 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y+LLS ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ +++ GG+G Sbjct: 166 YDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGIISGGGGGIGL 225 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R + I G+ +S G+ ++ + N + NQGG R GA YLE WH D+ F Sbjct: 226 CLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQDIFTF 285 Query: 463 LD---LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEVSDLHDL 513 L L+ + R ++ W+PDLFM+ + + W LFSPD+ +LH + Sbjct: 286 LQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDRGDGTWYLFSPDQAPNLHKV 345 Query: 514 YG----------KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 + +EF Y Y + + ++I + W K + + G+P+I F Sbjct: 346 FDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAKEI--IKEWFKTV---IQVGNPYIGF 400 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 KD N +S HVG + +SNLC EIT+ S E VCNL ++NL A N +DY Sbjct: 401 KDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAVNLAAFIRENSYDYRG 460 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L LDN+ID + E ++SN HR IG+G+ G + + SPEA+ Sbjct: 461 LIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASFKMKFGSPEAI 520 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + + + A+ SVELA+E+G++ SF GS +G+ D L D+L + Sbjct: 521 AMDEAIHAALYYGAMRRSVELAKEKGSHPSFPGSAASKGLLQPD----LWVRCDDLVFSW 576 Query: 741 TSRLP-----------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ W +L+ G+RN A+ PTAT +N G ++ +P NL Sbjct: 577 EERVAQTTQGVLTPKKWWQLRLAAMQ-GVRNGYLTALMPTATSSNSTGKNECFEPFTSNL 635 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + +SG+F V+N +L+++LK+ +LW EA+ L GSI +I IP ++++ + T+ Sbjct: 636 YTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRERYKTSR 695 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 E++ L + A+ R ++ Q+ SLN Y EP ++ + W GL T +YY Sbjct: 696 EMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPG 755 Query: 909 TSVEKSTLKGVDGKLNA 925 +K ++ + +A Sbjct: 756 AGTQKKIIRNSEKACSA 772 >gi|159030367|emb|CAO91262.1| nrdA [Microcystis aeruginosa PCC 7806] Length = 770 Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 230/786 (29%), Positives = 381/786 (48%), Gaps = 92/786 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ DG+ S N ++ +VE AC G + V+S + + + DG++ +++ LI Sbjct: 34 IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + +EP++ V R + L ++ L V + Q + + ++ Sbjct: 93 CALEMCSPEEPDWRYVAGRLHIWSLWKDTL--VVRGYQYGNYE-----------KTVKTQ 139 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 VK RL E ++ + +L + + + D ++Y G ++ RY L + E+PQ Sbjct: 140 VKNRLYDERILIYSEAELKEAGSWINPDWDIDYDYAGALLITSRYLL-----KNELPQEA 194 Query: 321 FMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 + ++ LA E + A +FY ++ +TP L N T L+SCF+ ++ D Sbjct: 195 LLTCSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDD 254 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + A ++K GG+G + + +R G+ + G S G+IP++K+ NDTA+AV Sbjct: 255 SLESIFSEITNAARISKNGGGVGVNVSRIRSTGSWVMGKANASGGIIPWIKLLNDTAIAV 314 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ I D FM+RV A Sbjct: 315 NQGGRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVITKAE 374 Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P EV +L +L+G+EFE AY E D+ E+ +++KI+A L++ ++ Sbjct: 375 WTLVDPYEVRTKLGIELAELWGEEFEEAYRLVEANLDK-EVLLYKKINARDLFKSIMRSQ 433 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHFA 612 ETG P+I FKD N +P +H G + S NLCTE N + ++TA CNL S+NL A Sbjct: 434 VETGMPYIAFKDTINRANPNKHDGYIPSVNLCTESFSNVTPDKTAHCCNLVSLNL----A 489 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 N D +++ S + AVR+LDN IDI + AK N +R IG+G MG L + Sbjct: 490 N--IDKEEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKL 547 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y + + E I + +S+ELA+ERGAY +F GS W QG IG A+ Sbjct: 548 SYNNRSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL----IG--AKP 598 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + N W +L + ++ G+RNS+ AIAP + + + G + S+ P Y + Sbjct: 599 LEWFLTNAVQPQRWQQLAEDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYD 658 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G + F+ + W +L+ Sbjct: 659 KWAKGTVPIAPPFI-----EEAFWFYPENKNLEQQQ------------------------ 689 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD---------EP----SGKKLDFIYRQAWLMGLKT 899 ++++ + Q+WID S+ L + EP + K + AW +G K Sbjct: 690 ---VVKAIAAMQEWIDTGISMELLFNLNEGVYFPAEPNRCLTAKDIFDTLIMAWELGCKA 746 Query: 900 TYYLRS 905 YY+R+ Sbjct: 747 IYYVRT 752 >gi|257453170|ref|ZP_05618469.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp. 3_1_5R] gi|257467365|ref|ZP_05631676.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918495|ref|ZP_07914735.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium gonidiaformans ATCC 25563] gi|317059705|ref|ZP_07924190.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 3_1_5R] gi|313685381|gb|EFS22216.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 3_1_5R] gi|313692370|gb|EFS29205.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium gonidiaformans ATCC 25563] Length = 752 Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 230/793 (29%), Positives = 377/793 (47%), Gaps = 99/793 (12%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ DG + N +++ + AC+GL+ + + L +++Y+ ++ ++ +LI Sbjct: 7 KVINRDGIIEDLNIEKIREKLVRACAGLE--VNMVELESKIESIYEENITTKKIQESLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQ-CLYPEYFCRY 259 S+ ++ +E ++A+V R L+ + REV + Y + +K + LY +Y Sbjct: 65 SAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGELEKTISLMLSYGLYDARLSKY 124 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 +E ++ L + ERD ++Y G + RY L +G E+PQ Sbjct: 125 TKE--------------EIYELNQAIVPERDMVYDYAGASMFVHRYLLKYSGKIHELPQE 170 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FM +AM L++ E +K K A E Y LS +TP L N + LSSCF+T + D+ Sbjct: 171 VFMIIAMLLSIYEKDKVKVAKEIYEGLSLRKISLATPILANLRIPNGNLSSCFITAIDDN 230 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAVN Sbjct: 231 IESIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAVN 290 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G+R GAV +++WH+D+E FL+L+ GD R + +D+ + +LFM+RV A W Sbjct: 291 QQGRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGADW 350 Query: 500 TLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TL P E+ ++ +LYG EFE YE ER+ +I++ + + A L+++++ Sbjct: 351 TLVDPYEIRQIYGVELCELYGVEFEEVYERIERE---NKIQLKKIMKARDLFKEIMKSQL 407 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------- 595 ETG P+I FKD N R+ H+G++ + NLC E N S Sbjct: 408 ETGMPYIFFKDRANERNHNSHLGMIGNGNLCMESFSNFSPSKNFQEKIVGNVAIHEKEMG 467 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E CNL S+NL Y L AVR LDN ID+ + ++ K N +R Sbjct: 468 EVHTCNLLSLNLAEIMEEELEKYTSL------AVRALDNTIDLTVTPLAESNKHNEKYRT 521 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G MG A +L E+ E + E I+ +A+ AS LA++RG Y +F GS Sbjct: 522 IGVGAMGL--ADYLAREYMIYEESEEEISQVFERIAAYALKASAFLARDRGQYPAFVGSK 579 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W QG+F + +D + W E+ V G+RN AIAP + + + Sbjct: 580 WSQGIF-------FGKTQDWYEKHSKYSDVWKEVFYLVDQYGLRNGELTAIAPNTSTSLL 632 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + S+ P++ +++ N SG +V LK R W Sbjct: 633 MGATASVVPTFSRFFIEKNQSG----ATPRVVKYLKDR-AW------------------- 668 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QA 892 + +DP ++ S+ +W Q S+ L D + IY A Sbjct: 669 --------FYPEFKNVDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLLTA 720 Query: 893 WLMGLKTTYYLRS 905 W G K+ YY+R+ Sbjct: 721 WETGCKSVYYVRT 733 >gi|294782023|ref|ZP_06747355.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 1_1_41FAA] gi|294481834|gb|EFG29603.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 1_1_41FAA] Length = 611 Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 205/609 (33%), Positives = 318/609 (52%), Gaps = 60/609 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 K++ D + N +++ + AC GL+ + + L ++Y+ ++ ++ +LI Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPEYFCRY 259 ++ T+ +E ++A V R L+ + REV + Y K H ++ LY E Y Sbjct: 65 TAVTMTSFEESDWAYVAGRLLMMEAEREVYHSRKFSYGDFAKTIKHMVELGLYDERLLAY 124 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 EE +L ++ + RD ++Y G +L +RY + +G E+PQ Sbjct: 125 TEE--------------ELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQE 170 Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 FM ++M LAL E E E R EFYN LS +TP L N + LSSCF+T + Sbjct: 171 TFMTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAI 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAV Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350 Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 WTLF P E+ +L +LYG EFE YE E+ D IK+ R +SA L++ ++ Sbjct: 351 ESWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKDND---IKLKRVLSAKELFKSIMK 407 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA------- 598 ETG P+I FKD N + H+G++ + NLC E T+N EE Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRS 467 Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNL S+NL + D+L + AVR LDN ID+ ++++ K N Sbjct: 468 EMGEIHTCNLISLNLA------ELTSDELEKYVALAVRALDNTIDLTVTPLKESNKHNLM 521 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FK Sbjct: 522 YRTIGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFK 579 Query: 713 GSLWDQGVF 721 GS WDQ +F Sbjct: 580 GSKWDQAIF 588 >gi|132601|sp|P26685|RIR1_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|554615|gb|AAA42732.1| ribonuclease reductase [African swine fever virus] Length = 779 Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 205/668 (30%), Positives = 345/668 (51%), Gaps = 28/668 (4%) Query: 285 LKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGL-ALKETEKEKRAVEF 342 + Y RD+ LG++ + + Y L + +G +E PQ +MRVA+ + + K + Sbjct: 106 IDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIHGMGRVVNMKMILLT 165 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y+LLS ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ +++ GG+G Sbjct: 166 YDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGIISGGGGGIGL 225 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R + I G+ +S G+ ++ + N + NQGG R GA YLE WH D+ F Sbjct: 226 CLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQDIFTF 285 Query: 463 LD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFSPDEVSDLHDL 513 L L+ + R ++ W+PDLFM+ + N G W LFSPD+ +LH + Sbjct: 286 LQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYLFSPDQAPNLHKV 345 Query: 514 YGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLFET----GHPWITFKDPC 567 + E +EN R+ + + ++ + V ++++ F+T G+P+I FKD Sbjct: 346 FDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQVGNPYIGFKDAI 404 Query: 568 NIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 N +S HVG + +SNLC EIT+ + E VCNL ++NL A + +DY L Sbjct: 405 NRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQGVCNLAAVNLAAFIRESSYDYRGLIEA 464 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 LDN+ID + E ++SN HR IG+G+ G L + + SPEA+ I + Sbjct: 465 AGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKFGSPEAIAIDE 524 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID----SIGLLAEVRDELAMNR 740 + + A+ S+ELA+E+G++ SF GS +G+ D L+ + +A Sbjct: 525 AIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLIPSWENRVAQTT 584 Query: 741 TSRL-PWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 L P + R+ I G+RN A+ PTAT +N G ++ +P NLY + +SG+ Sbjct: 585 QGVLTPKKWWQLRLAAIQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGE 644 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F ++N +L+++L++ +LW E + L GSI +I IP ++++ + T+ E++ L + Sbjct: 645 FIILNKYLMDDLEEINLWSEDIQQQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTK 704 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R ++ Q+ SLN Y EP ++ + W GL T +YY +K ++ Sbjct: 705 HAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIR 764 Query: 918 GVDGKLNA 925 + NA Sbjct: 765 NSEKACNA 772 >gi|166367093|ref|YP_001659366.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa NIES-843] gi|166089466|dbj|BAG04174.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa NIES-843] Length = 770 Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 232/787 (29%), Positives = 377/787 (47%), Gaps = 94/787 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ DG+ S N ++ +VE AC G + V+S + + + DG++ +++ LI Sbjct: 34 IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQ-CLYPEYFCRY 259 + + +EP++ V R + L ++ L Y +K +++ LY E Y Sbjct: 93 CALEMCSPEEPDWRYVAGRLHIWSLWKDTLVARGYQYGNYEKTVKTQVKKLLYDERILIY 152 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 E +K S ++ D D ++Y G ++ RY L + E+PQ Sbjct: 153 SEAELKE---AGSWINSDW-----------DIDYDYAGALLITSRYLL-----KNELPQE 193 Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 + ++ LA E + A +FY ++ +TP L N T L+SCF+ ++ Sbjct: 194 ALLTCSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSID 253 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L IF + A ++K GG+G + + +R G+ + G S G+IP++K+ NDTA+A Sbjct: 254 DSLESIFDEITNAARISKNGGGVGVNVSRIRATGSWVMGKANASGGIIPWIKLLNDTAIA 313 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ I D FM+RV A Sbjct: 314 VNQGGRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVINKA 373 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P EV +L +L+G+EFE AY E D+ EI +++KI+A L++ ++ Sbjct: 374 EWTLVDPYEVRNKLGIELAELWGEEFEEAYRLVEANLDQ-EILLYKKINARDLFKSIMRS 432 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHF 611 ETG P+I FKD N +P +H G + NLCTE N + ++TA CNL S+NL Sbjct: 433 QVETGMPYIAFKDTINRANPNKHDGYIPGVNLCTESFSNVTPDKTAHCCNLVSLNL---- 488 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 AN D +++ S + AVR+LDN IDI + AK N +R IG+G MG L Sbjct: 489 AN--IDREEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRK 546 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y + + E I + +S+ELA+ERGAY +F GS W QG IG A+ Sbjct: 547 LSYNNLSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL----IG--AK 597 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W +L ++ G+RNS+ AIAP + + + G + S+ P Y + Sbjct: 598 PVAWFLNNAVQPQRWQQLATDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFY 657 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G + F+ + W + +L+ Sbjct: 658 DKWAKGTVPIAPPFI-----EEAFWFYSENKNLEQQQ----------------------- 689 Query: 852 DPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLK 898 ++++ + Q+WID S+ L + +EP + K + AW +G K Sbjct: 690 ----VVKAIATMQEWIDTGISMELLFNLNEGVYFPEEPNRCLTAKDIFDTLVMAWELGCK 745 Query: 899 TTYYLRS 905 YY+R+ Sbjct: 746 AIYYIRT 752 >gi|284928995|ref|YP_003421517.1| ribonucleoside-diphosphate reductase, subunit alpha [cyanobacterium UCYN-A] gi|284809454|gb|ADB95159.1| ribonucleoside-diphosphate reductase, alpha subunit [cyanobacterium UCYN-A] Length = 770 Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 237/804 (29%), Positives = 391/804 (48%), Gaps = 97/804 (12%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A K+K+ DG+ + + ++ +V ACSG +DV+S + + + DG++ D++ Sbjct: 31 ASKIKVERRDGSWAALDIGKIRAVVSWACSG-KDVNSIALEAGLTTRLRDGITTKDIQNN 89 Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI + + +EP++ V R + L + +L + + + +E + Sbjct: 90 LINCTLEMCSPQEPDWRYVAGRLHIWSLWKNILVS---RGYQYDKYEFT----------V 136 Query: 261 EEGVKARLLHESMMDFDLVYL---ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 + V+ R + ++ + L L + + + D ++Y G +L RY L E+P Sbjct: 137 QTKVENRQYDKRLLTYSLEELKEAGSWINSDWDIDYDYAGAVLLSSRYLLPD-----ELP 191 Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q + A+ LA+ E + + A FY +++ +TP L N L+SCF+ Sbjct: 192 QEALLTCALLLAIVEAPQNRLPWAKRFYEAIATRKISLATPILANLRVPEGSLTSCFIIA 251 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + DDL I + A ++K GG+G + + +R G+ + G S G+IP++K+ NDTA Sbjct: 252 IDDDLESICEGVTNAARISKNGGGVGANVSRIRATGSWVMGKANASGGIIPWVKLLNDTA 311 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +AVNQGG+R GA+ ++ WH+D+ EFL+++ GD RR+ +D+ + D FM+RV Sbjct: 312 IAVNQGGRRAGAITISVDIWHLDIPEFLEMQTENGDQRRKAYDVFPQLVLTDEFMRRVEN 371 Query: 496 NAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 WTL P EV +L +L+G+EFE AY E + +I +++KI+A L++ ++ Sbjct: 372 KQEWTLVDPYEVRTKLGIELAELWGEEFERAYTLIESELG-NKITLYKKINARELFKNIM 430 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLA 609 ETG P++ FKD N +P +HVG + S NLCTE N +E+ CNL S+N LA Sbjct: 431 RSQIETGMPYLAFKDTINRANPNKHVGYIPSVNLCTESFSNVDPRKESHCCNLVSLN-LA 489 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + ++ Y L+S AVR+LDN IDI AK N +R IG+G MG L Sbjct: 490 NIEESEIGY--LSS---LAVRILDNTIDITNPPFSYAKAHNDRYRTIGVGCMGLADWLAK 544 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y A+ + E + + S+EL++ERGAY++F GS W +G IG Sbjct: 545 RFLTYDDINAIS---QLFEEVGYWCTHTSMELSKERGAYNAFAGSDWSKGKL----IG-- 595 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 ++ D N + + W EL + +KT G+RNS+ AIAP + + + G + SI P Y Sbjct: 596 SKPVDWFIENASQKERWVELSENIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRF 655 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + G + F+ + W YH+ + Sbjct: 656 FYDKWAKGTVPIAPPFI-----KESFW--------FYHENKV------------------ 684 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL--------YL-DEP----SGKKLDFIYRQAWLMG 896 +D +I++ S Q+WID S+ L YL +EP S + ++ AW G Sbjct: 685 -LDQQKVIKAVSAIQEWIDTGISMELLFNLNKGIYLPEEPESSLSATDIFKMFVTAWKNG 743 Query: 897 LKTTYYLRSRSATSVEKSTLKGVD 920 K YY+R +V+K K D Sbjct: 744 CKAIYYVR-----TVQKDDFKDFD 762 >gi|209972894|ref|YP_002300341.1| gp2.9 [Bacillus phage SPO1] gi|209871214|gb|ACI90970.1| gp2.9 [Bacillus phage SPO1] Length = 756 Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 221/672 (32%), Positives = 335/672 (49%), Gaps = 99/672 (14%) Query: 288 ERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKR---A 339 ERD ++ G+ +L DRY S+ E+PQ ++ +A+ L +++ + EKR Sbjct: 122 ERDLLLDHSGIMMLNDRYLFKYKDSKGNMHPYELPQERWLTIALTL-MQDEKPEKRMDLV 180 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + Y +LS+ + +TPT+ N+G QLSSCF+ TV D L I+ +++AM++K+ GG Sbjct: 181 KKAYWVLSNLYITVATPTMGNAGRPDGQLSSCFIGTVEDSLDNIYDNNKDSAMVSKFGGG 240 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G +R L ++I G GKSQGVIP++K +TA +V+Q G+RKGA+ YL+ WH DV Sbjct: 241 IGVYMGKIRSLNSYIRGMKGKSQGVIPWIKGLENTANSVDQLGQRKGAIAVYLDIWHKDV 300 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN---------AGWTLFSPDEVS-- 508 EFL + N GD+RR+ D+ +PDLFM+++ N A W LF P EV Sbjct: 301 MEFLQIGTNNGDERRKARDVFPGLCVPDLFMEKLQPNPETGKVDPDAKWYLFDPHEVRMV 360 Query: 509 ---DLHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L D Y +E F Y +V K A A + L ETG P+ Sbjct: 361 MGYSLEDSYDEEEGAGTFRKRYMECVNSPLLSRTEVLVKDVAKAF----MVSLMETGMPF 416 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------SEET------------- 597 + F+D N ++P +H G+++ SNLCTEIT N S +E+T Sbjct: 417 MFFRDEVNRKNPNKHAGMIYCSNLCTEITQNMSPTVQVEEYVENEDTDEAMIVYKVKPGD 476 Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+NL + + L I VR+LDNVID+N ++A +N +RAI Sbjct: 477 YVVCNLSSVNLGKAYPSGH-----LEDIIDIQVRMLDNVIDVNNLPRKQATLTNKKYRAI 531 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L + I + S E+VE AD+ E I++ A+ AS ++A+E+G Y +F+GS + Sbjct: 532 GLGTFGWHHLLAVSGIKWDSEESVEFADKVYEKIAYLALRASADIAKEKGTYRAFEGSDF 591 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G + + G +E S WD LK+ G+RN++ +A+AP A I Sbjct: 592 HTGDY-FNIRGYKSE---------GSEHDWDTLKEDCMNTGIRNAHVLAVAPNGNTALIA 641 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G +Q ID Y + DF + + D+ + + Sbjct: 642 GSTQGIDAFYTGTGIYYEEKKDFKI----------------PVIAPDM--------SPKT 677 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 P K + AF++ + I + RQK IDQ+ S N+Y+ + K + I W Sbjct: 678 FPYYWK---SGAFDVSHEYTIRQNAMRQKHIDQSVSFNIYIKSDIKFKDILNIINTCWKN 734 Query: 896 GLKTTYYLRSRS 907 LKTTYY R +S Sbjct: 735 KLKTTYYFRGQS 746 >gi|218249009|ref|YP_002374380.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp. PCC 8801] gi|218169487|gb|ACK68224.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp. PCC 8801] Length = 769 Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 239/824 (29%), Positives = 393/824 (47%), Gaps = 98/824 (11%) Query: 128 VRAAQSHSKSDAPIA-PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 V + SH P+A PK++++ D + N ++ +V AC G +V+ + + Sbjct: 15 VDSLHSHPHHSVPLATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLT 73 Query: 187 KNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTT---VYKKPQK 242 + G++ +++ LI + + EPN+ V R + L ++ L + Y +K Sbjct: 74 TRLRHGITTREIQDNLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTLVSRGYQYGNYEK 133 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 H +++ EY +RLL S + L + + + D ++Y G +L Sbjct: 134 TVHTKVEA--QEY---------DSRLLTYSSEE--LREAGSWINPDWDTDYDYAGAVLLT 180 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFN 360 RY L E+PQ + ++ LA E+ + + A +FY +++ +TP L N Sbjct: 181 SRYLLPN-----ELPQEALLSCSLLLATVESPENRLLWARQFYEAIATRKISLATPILAN 235 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L+SCF+ ++ D L IF + A ++K GG+G + + +R G+ + Sbjct: 236 LRVPGGSLTSCFIVSIDDSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANA 295 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S G+IP++K+ NDTA+AVNQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ Sbjct: 296 SGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVF 355 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIK 535 +PD FM+RV + WTL P EV +L +L+G++FE AY ER+ + +I Sbjct: 356 PQVILPDEFMRRVINKSEWTLVDPYEVRTKLGIELAELWGEKFEEAYGLIERELGQ-KIT 414 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSS 594 ++++I A L++ ++ ETG P++ FKD N +P +H G + NLCTE N S Sbjct: 415 LYKRIQARDLFKTIMRSQVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPG 474 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 +E CNL S+NL AN + +L S R AVR+LDN IDI + E AK N+ +R Sbjct: 475 KEAHSCNLVSLNL----AN--LEASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYR 528 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L + Y +++ ++ E + AS+ELA+ER Y +F+GS Sbjct: 529 TIGIGCMGLADWLAKNRLSY---DSLGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGS 585 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W QG IG A+ D N T + W +L + +K G+RNS+ AIAP + + Sbjct: 586 EWSQGKL----IG--AKSVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSL 639 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + SI P Y + G + F+ Sbjct: 640 VQGCTASILPVYSRFFYDKWAKGTVPIAPPFI---------------------------- 671 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----S 881 D+ + +D ++++ + Q+W+D S+ L + DEP + Sbjct: 672 ----DESFWFYPENKTLDQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSIT 727 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 K + AW G K YY+R +V+K K DG A Sbjct: 728 AKDIFDTLVLAWQSGCKAVYYVR-----TVQKDDFKESDGGCTA 766 >gi|257062092|ref|YP_003139980.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp. PCC 8802] gi|256592258|gb|ACV03145.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp. PCC 8802] Length = 769 Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 239/824 (29%), Positives = 393/824 (47%), Gaps = 98/824 (11%) Query: 128 VRAAQSHSKSDAPIA-PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 V + SH P+A PK++++ D + N ++ +V AC G +V+ + + Sbjct: 15 VDSLHSHPHHSVPLATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLT 73 Query: 187 KNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTT---VYKKPQK 242 + G++ +++ LI + + EPN+ V R + L ++ L + Y +K Sbjct: 74 TRLRHGITTREIQDNLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTLVSRGYQYGNYEK 133 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 H +++ EY +RLL S + L + + + D ++Y G +L Sbjct: 134 TVHTKVEA--QEY---------DSRLLTYSSEE--LREAGSWINPDWDTDYDYAGAVLLT 180 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFN 360 RY L E+PQ + ++ LA E+ + + A +FY +++ +TP L N Sbjct: 181 SRYLLPN-----ELPQEALLSCSLLLATVESPENRLLWARQFYEAIATRKVSLATPILAN 235 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L+SCF+ ++ D L IF + A ++K GG+G + + +R G+ + Sbjct: 236 LRVPGGSLTSCFIVSIDDSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANA 295 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S G+IP++K+ NDTA+AVNQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ Sbjct: 296 SGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVF 355 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIK 535 +PD FM+RV + WTL P EV +L +L+G++FE AY ER+ + +I Sbjct: 356 PQLILPDEFMRRVINKSEWTLVDPYEVRTKLGIELAELWGEKFEQAYGLIERELGQ-KIT 414 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSS 594 ++++I A L++ ++ ETG P++ FKD N +P +H G + NLCTE N S Sbjct: 415 LYKRIQARDLFKTIMRSQVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPG 474 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 +E CNL S+NL AN + +L S R AVR+LDN IDI + E AK N+ +R Sbjct: 475 KEAHSCNLVSLNL----AN--LEASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYR 528 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L + Y +++ ++ E + AS+ELA+ER Y +F+GS Sbjct: 529 TIGIGCMGLADWLAKNRLSY---DSLGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGS 585 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W QG IG A+ D N T + W +L + +K G+RNS+ AIAP + + Sbjct: 586 EWSQGKL----IG--AKSVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSL 639 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + SI P Y + G + F+ Sbjct: 640 VQGCTASILPVYSRFFYDKWAKGTVPIAPPFI---------------------------- 671 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----S 881 D+ + +D ++++ + Q+W+D S+ L + DEP + Sbjct: 672 ----DESFWFYPENKTLDQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSIT 727 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 K + AW G K YY+R +V+K K DG A Sbjct: 728 AKDIFDTLVLAWQSGCKAVYYVR-----TVQKDDFKESDGGCTA 766 >gi|332708566|ref|ZP_08428540.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya majuscula 3L] gi|332352663|gb|EGJ32229.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya majuscula 3L] Length = 753 Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 237/802 (29%), Positives = 389/802 (48%), Gaps = 99/802 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ DG+L S + ++ +VE AC+G +DV+ + + + DG++ +++ LI Sbjct: 17 IQVIKRDGSLTSLDISKIRAVVEWACAG-KDVNPITLEAGLTTRLRDGVTTREIQDNLIN 75 Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + +P++ V R + L ++ L +E Y +Y R + Sbjct: 76 CALEMCSPDQPDWRYVAGRLQIWSLWKDTLVN--------RGYE----YGDY-PRTVRSK 122 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 V++ S++ + +L + + + D ++Y G +L RY L E+PQ Sbjct: 123 VESGQYDPSILTYTTEELKEAGSWINRDWDTDYDYAGAVLLTRRYLLGD-----ELPQEA 177 Query: 321 FMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ A+ L E +++ A FY ++ +TP L N LSSCF+T++ D Sbjct: 178 FLTCALLLGSVEVPEDRLGWARRFYEAIAQRKISLATPILANLRIPQGSLSSCFITSIDD 237 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L IF + + A ++K GG+G + + +R G+ + G S GVIP++K+ NDTA+AV Sbjct: 238 NLESIFEGITDTARISKNGGGVGVNVSRIRSTGSWVMGKANASGGVIPWIKLLNDTAIAV 297 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ IPD FM+RV Sbjct: 298 NQGGRRAGAVTVSVDVWHLDVPEFLEMQAENGDPRRKAYDIFPQLVIPDEFMRRVVNKED 357 Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGE-IKVFRKISAVALWRKMLTM 552 WTL P EV +L +L+ +EFE AY+ E A GE + +++ ++A L++ ++ Sbjct: 358 WTLIDPYEVRIKLGIELSELWAEEFESAYQTIE--AAIGETLTLYKTVNARELFKTIMRS 415 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHF 611 ETG P++ FKD N +P QH G + + NLCTE N A CNL SINL Sbjct: 416 QVETGMPYLAFKDTINRANPNQHQGYIPAVNLCTESFSNVEIGHAAHCCNLDSINL---- 471 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 AN + +L + R AVR+LDN ID++ + A N +R IG+G MG L Sbjct: 472 AN--IEETELPNICRLAVRILDNTIDLSTPPFKAAHSHNQKYRTIGVGCMGLADWLAKRW 529 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y + + + E I ++ AS+ELA ERGAY++F GS W +G IG A+ Sbjct: 530 LTYNNLKEIS---NLFEDIGYYCTHASMELAIERGAYAAFDGSEWSKGKL----IG--AK 580 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + N W L + ++ G+RNS+ AIAP + + + G + S+ P + + Sbjct: 581 PVEWFVENSQHGERWVALSQDIQQFGIRNSHISAIAPNTSSSLVQGCTASVLPVHSKFFY 640 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G + F+ + + W YH E D KK+ Sbjct: 641 DKWAKGTVPIAPPFI-----KDNFW--------LYH-------ENKNFDQKKV------- 673 Query: 852 DPMWLIESASRRQKWIDQAQSLNL---------YLDEPSGK-KLDFIYR---QAWLMGLK 898 +++ + Q+WID S+ L + DEP K IY AW +G K Sbjct: 674 -----VKAIATIQQWIDTGISMELLFNLNQGVYFPDEPERTLKAKDIYETLVMAWELGCK 728 Query: 899 TTYYLRSRSATSVEKSTLKGVD 920 YY+R +V++ K +D Sbjct: 729 AVYYIR-----TVQRDNFKELD 745 >gi|154278713|ref|XP_001540170.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces capsulatus NAm1] gi|150413755|gb|EDN09138.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces capsulatus NAm1] Length = 508 Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 181/473 (38%), Positives = 262/473 (55%), Gaps = 44/473 (9%) Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 V C GL + V + + + +Y G++ +L+ ++ + P+YA + AR Sbjct: 22 VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYATLAARI 81 Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 + L ++ V+ +Y K Q+ Q Y E R+ +E A Sbjct: 82 AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTY-ETVMRHADEFNSA------ 134 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ + Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391 E R +E YNL+S F ++PTLFN+GT PQ++SCFL + +D + GI+ L+ A Sbjct: 183 VE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450 +++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QGG KR GA Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E L Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 D+YG EFE YE YE++ RG+ + + A LW +L ETG+P++ +KD CN + Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILEAQTETGNPFMLYKDSCNRK 414 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKL 621 S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ KL Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKL 467 >gi|257462864|ref|ZP_05627270.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp. D12] gi|317060490|ref|ZP_07924975.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D12] gi|313686166|gb|EFS23001.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D12] Length = 752 Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 228/795 (28%), Positives = 373/795 (46%), Gaps = 99/795 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETAL 202 K K++ DG + + +++ + AC+GL+ + + L +++Y+ ++ ++ +L Sbjct: 5 KRKVINRDGIVEELDIEKIREKLLRACAGLE--VNMVELESKIESIYEENITTKKIQESL 62 Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQ-CLYPEYFC 257 I S+ ++ +E ++A+V R L+ + REV + Y +K + LY Sbjct: 63 INSAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGNLEKTISLMLSYGLYDTRLS 122 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 Y E+ ++ L + ERD ++Y G + RY L NG E+P Sbjct: 123 IYTEQ--------------EIYELNQAIVPERDMVYDYAGASMFVHRYLLKYNGKTHELP 168 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q FM +AM L++ E ++ K A E Y LS +TP L N LSSCF+T + Sbjct: 169 QEVFMIIAMLLSIHEQDRVKVAKEIYEGLSLQKISLATPILANLRIPKGNLSSCFITAID 228 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVA Sbjct: 229 DNIESIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVA 288 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQ G+R GAV +++WH+D+E FL+L+ GD R + +D+ + +LFM+RV Sbjct: 289 VNQQGRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGE 348 Query: 498 GWTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P E+ L+ +LYG +FE YER +I++ +K+ A L++ M+ Sbjct: 349 DWTLVDPYEIRKLYGVELCELYGAKFEEV---YERVEREEKIQLKKKMKARDLFKAMMKS 405 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG P+I FKD N R+ H G++ + NLC E N S Sbjct: 406 QLETGMPYIFFKDRANERNHNSHEGMIGNGNLCMESFSNFSPSKNFQEEVLGNQAIRRKE 465 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 E CNL S+NL + ++L AVR LDN ID+ + ++ K N + Sbjct: 466 MGEIHTCNLLSLNLA------EITEEELEKYTGLAVRALDNTIDLTVTPLAESNKHNEKY 519 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G MG L ++ Y E E + E I+ +A+ AS LA++RG Y +F G Sbjct: 520 RTVGVGAMGLADYLAREYMIYEDSE--EEISQLFEKIAAYALKASAFLAKDRGQYPAFSG 577 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W QG+F + ++ + W E+ V G+RN AIAP + + Sbjct: 578 SKWSQGIF-------FGKTQEWYEKHSKYAELWKEVFYLVDQYGLRNGELTAIAPNTSTS 630 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + G + SI P++ +++ N SG +V LK R W Sbjct: 631 LLMGATASIVPTFSRFFIEKNQSG----ATPRVVKYLKDR-AW----------------- 668 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR--- 890 + +DP ++ S+ +W Q S+ L D + IY Sbjct: 669 ----------FYPEFKNVDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLV 718 Query: 891 QAWLMGLKTTYYLRS 905 AW G K+ YY+R+ Sbjct: 719 TAWETGCKSVYYVRT 733 >gi|172036269|ref|YP_001802770.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp. ATCC 51142] gi|171697723|gb|ACB50704.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp. ATCC 51142] Length = 769 Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 239/830 (28%), Positives = 395/830 (47%), Gaps = 102/830 (12%) Query: 128 VRAAQSHSKSDAPIAP---------KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS 178 + + Q SD I P K+++ DG+ + N ++ +V AC+ +DV+S Sbjct: 7 ITSPQQTHHSDTHITPNYHSQLGESKIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNS 65 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV- 236 + + + DG++ +++ LI + + EP++ V R + L ++ L Sbjct: 66 IALEAGLTTRLRDGITTREIQDNLINCALEMCSPTEPDWRYVAGRLHIWSLWKDTLVNRG 125 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 Y+ T E + +Y RLL S + L + + + D ++Y Sbjct: 126 YQYGNYETTVETKVEAGQY---------DNRLLTYSTTE--LREAGSWINPDWDTDYDYA 174 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCS 354 G +L RY L E+PQ + A+ LA E+ + + A +FY ++S + Sbjct: 175 GAVLLTSRYLLPQ-----ELPQEALLSCALLLATVESPENRLPWARQFYEAIASRKVSLA 229 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 TP L N L+SCF+ ++ D+L IF + A ++K GG+G + + +R G+ + Sbjct: 230 TPILANLRVPGGSLTSCFILSIDDNLESIFEEITNTARISKNGGGVGVNVSRIRATGSWV 289 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G N S G+IP++K+ NDTA+AVNQGG+R GAV ++ WH+DV EFL+++ GD RR Sbjct: 290 MGKNNASGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRR 349 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQA 529 + +D+ + D FM+RV WTL P E+ +L +L+G++FE AY E + Sbjct: 350 KAYDVFPQLILTDEFMRRVENKEQWTLVDPYEIREKLGIELAELWGEKFEAAYRLIEAEL 409 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 DR EI ++++++A L++ ++ ETG P++ FKD N +P +HVG + NLCTE Sbjct: 410 DR-EITLYKRVNARELFKTIMRSQVETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESF 468 Query: 590 LN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 N + +E CNL S+N LA+ + +Y + AVR+LDN IDI E AK Sbjct: 469 SNVTPGKEAHCCNLVSLN-LANIEEYELNY-----LCKIAVRILDNTIDITNPPFEDAKA 522 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 N +R IG+G MG L + Y + EI++ E + + S+ELA+ER Y Sbjct: 523 HNDRYRTIGVGCMGLADWLAKKELTYEN--LTEISN-LFEEVGYWCTHTSMELAKERSPY 579 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F+GS W++G+ IG ++ + N + W +L + +KT G+RNS+ AIAP Sbjct: 580 DAFEGSDWNKGLL----IG--SKPVNWFVENAHKKERWIQLSEDIKTYGIRNSHITAIAP 633 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + + G + SI P Y + G + F+ + W YH+ Sbjct: 634 NTSSSLVQGCTASILPVYSRFFYDKWAKGTVPIAPPFI-----KDSFW--------FYHE 680 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDE 879 +D ++++ S Q+WID S+ L + +E Sbjct: 681 NKT-------------------LDQQKVVKAVSTIQQWIDTGISMELLFNLNQGIYFPNE 721 Query: 880 P----SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 P + K + AW G K YY+R +V+K K D A Sbjct: 722 PERCLTAKDIFETLLLAWKEGCKAIYYVR-----TVQKDDFKESDNNCTA 766 >gi|48696770|ref|YP_024594.1| ORF51 [Ostreid herpesvirus 1] gi|81986457|sp|Q6R7H4|RIR1_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase large subunit gi|41352434|gb|AAS00941.1| ORF51 [Ostreid herpesvirus 1] Length = 835 Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 209/667 (31%), Positives = 334/667 (50%), Gaps = 64/667 (9%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLS 347 RD++ Y+G+ L + + +N E PQ FMRVAM + +E + + Y L+S Sbjct: 155 RDYSHNYMGITGLLNGVAIKVNKKLYERPQYVFMRVAMAMTDLSSETALEDIWQTYMLIS 214 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 ++P LFN GT +SCFL + D++ I + + L +GG+G +++ + Sbjct: 215 GQCLSMASPVLFNGGTSSSNTASCFLLDMGDNMVSITKKVAQTMTLIAKNGGIGINFSKL 274 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466 R G+ I G GKS G+ L + + A +V+QG KR GA+ YL WH D+ ++L R Sbjct: 275 RATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQGENKRPGAIAGYLTDWHADMYDWLYSR 333 Query: 467 -KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +G++ + H +N + DLFM+RV + W+LFSP++V L +LYG++F AY + Sbjct: 334 YSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLFSPNDVVGLEELYGEKFVRAYRAH 393 Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E K+ R +SA L+ + M++ TG P+I FKD N RS +H+G + +SNL Sbjct: 394 EANP-----KIKRTTVSARKLFSDIANMMWSTGEPYILFKDAVNERSNHKHLGTIKNSNL 448 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVID---- 637 C EI + E AVCNL +I +++F N + D++ +A A + ++N+ID Sbjct: 449 CCEIVQYCDTNEIAVCNLATI-CVSNFVNVETGEIDFEGIADAAGVACKGINNLIDKQNY 507 Query: 638 ------------------INCHTIEKAKK------SNHTHRAIGLGLMGFQSALHLLHIP 673 + + I+ K SN HR G+G+ G L IP Sbjct: 508 DLGNEQLMRLADERTEEVVEVNGIKFDAKYNLVSYSNLKHRPQGIGMQGLHDVFMKLKIP 567 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-----QGVFPIDSIGL 728 Y S A +A E I + A+ SV++A+E+G Y S+ WD +G D + Sbjct: 568 YDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPYPSY---YWDNNTHREGKLQFDFLEG 624 Query: 729 LAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 RD EL W E+ K+ + G+ NS A P+A+ + + +SI+ Sbjct: 625 FDRDRDLTHEL-------FNWREVLKKFEKFGINNSVVTAQPPSASSSQLNDNVESIEAI 677 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N + K G F ++N L +L+ +WD M+ D++ +DGSI NIERIP ++++I+ Sbjct: 678 TSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEANDGSIQNIERIPKNIREIY 737 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL---MGLKT-TY 901 TA EID +++ + Q +IDQ S N+++ + + I L M LKT Y Sbjct: 738 KTAREIDHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQLIMENVILGHKMKLKTGMY 797 Query: 902 YLRSRSA 908 Y R A Sbjct: 798 YTRGIPA 804 >gi|117530177|ref|YP_851020.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis phage Ma-LMM01] gi|86990303|dbj|BAE79255.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis phage Ma-LMM01] gi|117165789|dbj|BAF36097.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis phage Ma-LMM01] gi|124270943|dbj|BAF45773.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage Ma-LMM02] gi|124270945|dbj|BAF45774.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage Ma-LMM03] gi|124270947|dbj|BAF45775.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage Ma-HPM05] Length = 742 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 234/800 (29%), Positives = 379/800 (47%), Gaps = 95/800 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 ++ ++ DG+ +++ R ++ AC GL+ K LS ++ ++ +++ L Sbjct: 2 QINVIHTDGSRTPYDANRAIEVINWACEGLEVDPDK--LSRRLSRRFNADITTEEIQNGL 59 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ L + + P++ KV+ R + RR+V KA + YP F Sbjct: 60 IRTAAELADLQYPDWLKVSGRLRMWDWRRKV---------KARRGYLYGNYPVAFEYLRS 110 Query: 262 EGVKARLLHESMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI 314 EG+ L + +D Y A+D+ ERD F+ G +L RY L Sbjct: 111 EGLYEGDLIKKFLD---TYSADDIAEAGTWIDPERDMRFDISGADLLTARYLLEG----- 162 Query: 315 EMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E+ Q ++ A+ L++ E E+ A + Y+LLS +TP + N LSSC Sbjct: 163 ELLQEMWLTQALLLSMLEPAHERMTFAHKAYDLLSLGKISLATPLMSNLRQADGSLSSCH 222 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + + D IF + + A ++ GG+G + VR G+ I G S GV P++K+ N Sbjct: 223 IIDIDDSRESIFDNISQLAAMSANGGGVGVRISKVRARGSRIRKKKGASGGVCPWIKIIN 282 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T VA NQ G R GA ++ WH D+ E++DLR + G + + D+ I D FM+R Sbjct: 283 ATIVATNQRGVRAGACTVGIDVWHADLLEYMDLRGDAGSEHTKARDILLQFIISDEFMRR 342 Query: 493 VTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVAL 545 V + W L P E+ + L D+YG EF AY E + + V +K+SA A+ Sbjct: 343 VILDKDWYLVCPTEIKNVFGYQLADMYGDEFTNAYHVIEAYINSSAPPLDVVKKVSAKAI 402 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W+KML +L ETG P++ FKD N +P +H G++ NLC E +S + C L S+ Sbjct: 403 WKKMLMLLLETGTPYVAFKDRINALNPNKHEGIIGGVNLCVESYSLFNSSYSHCCMLLSL 462 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 +L A+ D++A RTAVR+LD D+ +A+ + +R IG+G+MG Sbjct: 463 -VLPRIAD-----DEMADVSRTAVRLLDAACDLTTSPTPEARAHVNRYRTIGVGVMGLAD 516 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + H+ Y + + + ++ E I F+ ASVELA+ERGAY +F GS W +G+ Sbjct: 517 WLAIRHLRY---QDLNLIEKLFEDICFYTTQASVELAEERGAYPAFPGSEWSKGLI---- 569 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 L ++ + N T W L +R+ G+RNS+ +A AP ++ + + G + S P Sbjct: 570 --LGGRDKEWVRDNSTDPERWYALMERIIVSGIRNSHILATAPNSSTSLVQGATASFLPV 627 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + L + N +G T+V ++ EA +H + Sbjct: 628 FSRLTIDKNGAGINTIVPLYI----------KEA------FH----------------FY 655 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----------EPSGKKLDFIYRQAWLM 895 + P ++ +A+ QKW+D S L + + K L+ +Y QAW Sbjct: 656 QESRYTHPSVVVSAAATIQKWVDTGLSTELLFNFNEHAYGFDYVATAKDLNDVYMQAWRE 715 Query: 896 GLKTTYYLRSRSATSV-EKS 914 GLKT YY+RS +V EKS Sbjct: 716 GLKTVYYVRSMWQDTVTEKS 735 >gi|218961217|ref|YP_001740992.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) [Candidatus Cloacamonas acidaminovorans] gi|167729874|emb|CAO80786.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) [Candidatus Cloacamonas acidaminovorans] Length = 753 Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 199/616 (32%), Positives = 309/616 (50%), Gaps = 58/616 (9%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 L++L RYF NG IE RVA +A + EK +R FY L+ + +F+ ++P Sbjct: 10 LKVLEKRYFRKDENGVLIEDWDKMLTRVASNIASGDEEKTRR---FYQLMDAGYFLPNSP 66 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TL N+G QLS+CF+ + D + IF ++ A++ K GG G ++ +R A + Sbjct: 67 TLMNAGGDLQQLSACFVLPIEDSMESIFETVKNAALIHKSGGGTGFSFSHLREANARVRS 126 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG S G + FLKV N AV QGG R+GA A L H + +F+ ++N + Sbjct: 127 TNGVSSGPLSFLKVFNAATDAVKQGGTRRGANMAILNVDHPQILDFITCKENPAE----L 182 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 + N + I + FM+ VT + + L SP + + Sbjct: 183 TNFNISVGITEDFMQAVTNDDEYNLISPHTGA---------------------------I 215 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 ++K+ A ++ ++ M + G P I F D N +P +G + S+N C E L Sbjct: 216 YKKLKARDVFALIVKMAHKNGEPGIVFLDRLNNANPTPTLGKIESTNPCGEQPLLPYE-- 273 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNLGSINL + D+DKL +R ++ LD VID++ + + + + +R I Sbjct: 274 --ACNLGSINLALLIKDGDVDWDKLKEVVRESIDFLDAVIDVSKFPLHQIETISQANRKI 331 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+MG+ L L IPYAS EAV +A + MEFI F+A S ELAQE+GA+ +F+ S++ Sbjct: 332 GLGVMGWADLLFQLKIPYASEEAVALAAKLMEFIDFYAKERSSELAQEKGAFPNFQESIY 391 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G + I PWD LK+++K G+RN+ IAPT TI+ I Sbjct: 392 ATGCLKREKI----------------NQPWDSLKEKIKKEGIRNATLTTIAPTGTISMIA 435 Query: 777 GVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 S I+P + YVK+ M G+ VN +L L+++ +++ ++ ++ GS+ IE Sbjct: 436 DTSSGIEPQFSLAYVKNVMDGEKLIYVNKYLQKALEEKGIYNNKLLDEI-LTRGSLAGIE 494 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWL 894 IPDDLKK+ TA +I P W I + QK+ D A S + + + + + + Y A+ Sbjct: 495 GIPDDLKKVFQTAHDISPEWHIRMQAAFQKYTDNAVSKTINFPNSATVEDIQSAYELAYH 554 Query: 895 MGLKTTYYLRSRSATS 910 +G K R S S Sbjct: 555 LGCKGVTVYRDGSRES 570 >gi|261884883|ref|ZP_06008922.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 348 Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 153/320 (47%), Positives = 204/320 (63%), Gaps = 8/320 (2%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 F YLG++ LYDRY + N IE+PQ FM +AM LA E + + A +FY+L+S F Sbjct: 3 FAYLGIKTLYDRYLIKDRNAKPIELPQHMFMAIAMFLAQNELDSQSWAKKFYDLISKFEV 62 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 M +TPTL N+ T QLSSC++ + PD++ GIF + +E A+L K+ GG+G DW VR +G Sbjct: 63 MLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLCKFGGGIGWDWCKVRAMG 122 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 I G + G+IPFLK ND AVAV+Q G RKGA+ Y+E WH+DV +FLDLRKN+G+ Sbjct: 123 GSIDGHKNAAGGIIPFLKDTNDIAVAVDQLGTRKGAIAVYIEPWHMDVSDFLDLRKNSGE 182 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 +RRR H++ A WI DLFMKR++QN WTLF P + DL DLYG EFE Y YE+ Sbjct: 183 ERRRAHELFPALWINDLFMKRLSQNERWTLFDPADTPDLCDLYGDEFEKRYIEYEKDPHI 242 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 + + K LW+K+LT FETG P++ FKD N +P H G++ SSNLCTEI N Sbjct: 243 AKSSMLAK----ELWKKILTNYFETGMPFLCFKDNANRANPNAHKGIIRSSNLCTEIFQN 298 Query: 592 SSS---EETAVCNLGSINLL 608 + + V + GS L Sbjct: 299 TEPNYYQTKVVFDDGSFKLF 318 >gi|284051980|ref|ZP_06382190.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira platensis str. Paraca] gi|291570481|dbj|BAI92753.1| ribonucleoside-diphosphate reductase alpha chain [Arthrospira platensis NIES-39] Length = 752 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 222/805 (27%), Positives = 376/805 (46%), Gaps = 92/805 (11%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + +D P +++++ DG+L + R+ +V AC GL D + + + + +G++ Sbjct: 6 TTTDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGL-DANPITLEAGLTTRLKNGVT 64 Query: 195 ESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 +++ LI + L +P++ V R + L ++ L + + +E Sbjct: 65 TREIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVS------RGYQYED----- 113 Query: 254 EYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 +C+ + VKA + ++ + L + + D ++Y G +L RY L Sbjct: 114 --YCQTVTTKVKAGQYDDRLLKYTPEQLREAGTWINPQWDKDYDYAGAILLTKRYLLPQ- 170 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 E+PQ + A+ LA+ E EKR A +FY ++ +TP L N + Sbjct: 171 ----ELPQEALLSCALLLAVVEA-PEKRMFWAHKFYQAIALRQISLATPILANLRIPNGS 225 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ + D+L IF +++ A ++K GG+G + + +R G+ + G S GVIP+ Sbjct: 226 LSSCFIIGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPW 285 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ NDTA+AVNQGG+R GA+ L+ WH+D+ EFL+++ GD RR+ +D+ I D Sbjct: 286 IKLLNDTAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISD 345 Query: 488 LFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 FM+RV WTL P EV +L +L+G+EFE++Y+ E D ++K++++I+A Sbjct: 346 EFMRRVRNCENWTLVDPYEVRVKLGIELSELWGEEFELSYQKIESSLD-SKLKLYKRINA 404 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 L++ ++ ETG P++ FKD N +P QH G + NLC E N E L Sbjct: 405 RELFKNIMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----L 459 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L D+ L + AVR+LDN I+I + + N +R IG+G+MG Sbjct: 460 AHTCNLNSLNLANLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQCYRTIGVGVMG 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L Y V+ E I F+ S+EL++ERGAY +F GS W QG Sbjct: 520 LADWLAKRRFSY---NHVQEISNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL- 575 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 IG A+ D + ++ W EL + ++ G+RNS+ AIAP + + + G + S+ Sbjct: 576 ---IG--AKPVDWFLTHADDKIRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASV 630 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P Y + G + F+ + + W Sbjct: 631 LPCYSRFFYDKWAKGTVPIAPPFI-----KENFW-------------------------- 659 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIY 889 + +D ++++ + Q+WID S+ L + +EP K + Sbjct: 660 -FYPENKTLDQQIVVKAVATMQQWIDTGISMELMFNLNQGVYFPEEPDRSLKAKDIFETL 718 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914 AW G K YY+R+ S ++S Sbjct: 719 MAAWEQGCKAIYYVRTVQRDSFQES 743 >gi|317472118|ref|ZP_07931450.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA] gi|316900522|gb|EFV22504.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA] Length = 676 Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 210/655 (32%), Positives = 333/655 (50%), Gaps = 81/655 (12%) Query: 173 LQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230 LQ+ S +L+E +++ + +G+ + + L+ ++ L +E P + + AR + + Sbjct: 47 LQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAAAELTSQEAPKWENIAARLKILEFES 106 Query: 231 EVLTTVYKKP-----QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND- 284 V + + +K Q LY +Y + E D ++L + Sbjct: 107 VVKNNLEEYQIRNFYEKIVFLSQQNLYGDYILKNYAE--------------DEIHLFSSW 152 Query: 285 LKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-F 342 ++ ER+ F Y GL++L RY + G+ +E PQ FM +AM LA+KETE + V+ F Sbjct: 153 IRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGIAMHLAMKETEDRNQWVKRF 212 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y++LS +TPTL N+ + QLSSCF+ TVPD L GI+ ++ A ++K+ GG+G Sbjct: 213 YDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGL 272 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+GAV YL+ WH D+ EF Sbjct: 273 YFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGMRQGAVAVYLDVWHRDLPEF 332 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYG 515 L LR N GD+R + HD+ A PD F ++ N W L P E+ L D YG Sbjct: 333 LSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGNWYLMCPHEILTVKGYALEDCYG 392 Query: 516 KEFEIAYENY---ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E+ Y + ER + R I + R ++ ETG P+ +D N +P Sbjct: 393 TEWTEKYLDCVLDERISK-------RVIPIKDIVRMIIKSAAETGTPFTFNRDHVNRANP 445 Query: 573 QQHVGVVHSSNLCTEITLN-SSSEET----------------------AVCNLGSINLLA 609 +H G+++ SNLCTEI N S+S +T VCNL S++L Sbjct: 446 NRHKGIIYCSNLCTEIAQNMSASGQTEQKIEMIGGEEVVVTVTKPGDFVVCNLASLSLGN 505 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 DY++L+ +AVR LDNVID+N + A+ ++ +R +GLG+ G+ L Sbjct: 506 LCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRYRPVGLGVSGYHHMLAK 562 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 I + S E ++ A++ I + A++AS ++++E+G+Y F GS W G Sbjct: 563 HKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPGSDWQTG---------- 612 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 D ++ W L+ RVK G+RN +A APT++ + I G + +DP Sbjct: 613 ----DYFRKRDLTKGRWKALEDRVKKHGLRNGYLLAAAPTSSTSIITGTTAGLDP 663 >gi|126658927|ref|ZP_01730069.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] gi|126619725|gb|EAZ90452.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] Length = 768 Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 233/811 (28%), Positives = 382/811 (47%), Gaps = 105/811 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+++ DG+ + N ++ +V AC+ +DV+S + + + DG++ +++ LI Sbjct: 31 KIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNSIALEAGLTTRLRDGITTREIQDNLI 89 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + EP++ V R + L ++ L V + Q + E Sbjct: 90 NCALEMCSPNEPDWRYVAGRLHIWSLWKDTL--VNRGYQYGNY---------------ET 132 Query: 263 GVKARLLHESMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRIE 315 VK ++ + L Y +LK + D ++Y G +L RY L E Sbjct: 133 TVKTKVETGQYDNRLLTYSKTELKEAGSWINPDWDTDYDYAGAVLLTSRYLLPE-----E 187 Query: 316 MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +PQ + A+ LA E+ + + A FY ++ +TP L N L+SCF+ Sbjct: 188 LPQEALLSCALLLATVESPENRLPWAKRFYEAIARRKVSLATPILANLRVPGGSLTSCFI 247 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 ++ D+L IF + A ++K GG+G + + +R G+ + G N S G+IP++K+ ND Sbjct: 248 LSIDDNLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGIIPWIKLLND 307 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TA+AVNQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ + D FM+RV Sbjct: 308 TAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRV 367 Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 WTL P EV +L +L+G++FE AY E + DR EI ++++++A L++ Sbjct: 368 ENKEQWTLVDPYEVREKLGIELAELWGEKFEEAYRLIEAEIDR-EITLYKRVNARELFKT 426 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINL 607 ++ ETG P++ FKD N +P +HVG + NLCTE N + +E CNL S+NL Sbjct: 427 IMRSQVETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESFSNVTPGKEAHCCNLVSLNL 486 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 AN + D+L + AVR+LDN IDI + AK N +R IG+G MG L Sbjct: 487 ----AN--IEEDELNYLCKIAVRILDNTIDITNPPFDDAKSHNDRYRTIGVGCMGLADWL 540 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y E + E + + S+ELA+ER Y +F GS W +G+ IG Sbjct: 541 AKQGLTY---ENIAEISNIFEEVGYWCTQTSMELAKERSPYDAFAGSDWSKGLL----IG 593 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 ++ + N + W +L + +KT G+RNS+ AIAP + + + G + SI P Y Sbjct: 594 --SKPVNWFVENANKKERWIQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYS 651 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + G + F+ + W YH+ +++ Sbjct: 652 RFFYDKWAKGTVPIAPPFI-----KDSFW--------FYHENKTLEQQKV---------- 688 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWL 894 +++ S Q+WID S+ L + +EP + K + AW Sbjct: 689 ---------VKAVSTIQQWIDTGISMELLFNLNQGVYFPNEPERCLTAKDIFETLLLAWK 739 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 G K YY+R +V+K K D A Sbjct: 740 EGCKAIYYVR-----TVQKDDFKESDNNCTA 765 >gi|209523558|ref|ZP_03272112.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira maxima CS-328] gi|209495963|gb|EDZ96264.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira maxima CS-328] Length = 752 Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 222/805 (27%), Positives = 377/805 (46%), Gaps = 92/805 (11%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + +D P +++++ DG+L + R+ +V AC GL D + + + + +G++ Sbjct: 6 TTTDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGL-DANPITLEAGLTTRLKNGVT 64 Query: 195 ESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 +++ LI + L +P++ V R + L ++ L + + +E Sbjct: 65 TREIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVS------RGYQYED----- 113 Query: 254 EYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 +C+ + VK+ ++ + L + + + D ++Y G +L RY L Sbjct: 114 --YCQTVTSKVKSGQYDARLLKYTPDQLREAGSWINPQWDKDYDYAGAVLLTKRYLLPE- 170 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 E+PQ + A+ LA+ E EKR A +FY ++ +TP L N + Sbjct: 171 ----ELPQEALLSCALLLAVVEA-PEKRMFWAQKFYQAIALRQISLATPILANLRIPNGS 225 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ + D+L IF +++ A ++K GG+G + + +R G+ + G S GVIP+ Sbjct: 226 LSSCFIIGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPW 285 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ NDTA+AVNQGG+R GA+ L+ WH+D+ EFL+++ GD RR+ +D+ I D Sbjct: 286 IKLLNDTAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISD 345 Query: 488 LFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 FM+RV WTL P EV +L +L+G+EFE AY+ E D E+K++++I+A Sbjct: 346 EFMRRVRNCENWTLIDPYEVRVKLGIELSELWGEEFESAYQKIEASLDY-ELKLYKRINA 404 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 L++ ++ ETG P++ FKD N +P QH G + NLC E N E L Sbjct: 405 RELFKNIMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----L 459 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L + D+ L + AVR+LDN I+I + + N +R IG+G+MG Sbjct: 460 AHTCNLNSLNLSNLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQRYRTIGVGVMG 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L Y+ + + E I F+ S+EL++ERGAY +F GS W QG Sbjct: 520 LADWLAKRRFSYSHLQEIS---NLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL- 575 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 IG A+ D + + W EL + ++ G+RNS+ AIAP + + + G + S+ Sbjct: 576 ---IG--AKPVDWFLTHADDKHRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASV 630 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P Y + G + F+ + + W Sbjct: 631 LPCYSRFFYDKWAKGTVPIAPPFI-----KDNFW-------------------------- 659 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEPS----GKKLDFIY 889 + +D ++++ + Q+WID S+ L + +EP+ K + Sbjct: 660 -FYPENKTLDQQIVVKAVAAMQQWIDTGISMELMFNLNQGVYFPEEPARSLKAKDIFDTL 718 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914 AW G K YY+R+ S ++S Sbjct: 719 MAAWEQGCKAIYYVRTVQRDSFQES 743 >gi|302349050|ref|YP_003816688.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans 345-15] gi|302329462|gb|ADL19657.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans 345-15] Length = 756 Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 192/647 (29%), Positives = 328/647 (50%), Gaps = 35/647 (5%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNLLSSFH 350 ++GL +LY+RY + G +E P RVA +A E + EFY ++SS Sbjct: 93 WVGLNLLYERYLVKRKGFVVETPNEALERVASFVAEAELSLGGSLDAARQEFYEIMSSGR 152 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 FM ++PT+ NSGT++ QL++CF+ + DD+ IF AL A + K G G D+TP+RG Sbjct: 153 FMPNSPTIMNSGTKYHQLAACFVIPLEDDMDSIFSALNTAAWVFKTGAGAGFDFTPLRGR 212 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G+ + G + G + F+K+ ++ A + +GG+R+ A+ L H+D+E+F++ + + G Sbjct: 213 GSPLS-FGGTASGPVSFMKLFDEVADVIKEGGRRRAAMMGVLHDVHVDLEDFINSKLSGG 271 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + N + + D FM ++ W L+ P+E L L + + + R + Sbjct: 272 -----LENFNISVGVHDAFMMAAASDSEWNLYDPNECPQLVGLLSGDLP---DLWRRCSP 323 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 R R + A +L + +ETG P + F D N +P +G + ++N C E L Sbjct: 324 R------RTVRASSLLEEAARAAWETGDPGLVFLDTINQHNPTPRLGRIRATNPCGETPL 377 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 S CNLGS+NL + + D++ L IR AVR LD+VI+ + + + + + Sbjct: 378 LSWE----ACNLGSLNLGRYVKDEGIDWELLEHDIRIAVRFLDDVIETSWYPRPEIEAAV 433 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R IGLG+MG+ L L IPY S A+ +AD+ MEFI++ A S L++ERG Y Sbjct: 434 KRTRKIGLGVMGWADMLAKLKIPYDSDSALYLADKLMEFIAYVARDESNRLSRERGPYPE 493 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELA--------MNRTSRLPWDELKKRVKTIGMRNSN 762 F GS+ G F + +++ DE +N +L WD ++ + G RN+ Sbjct: 494 FPGSIHKDGRFNFEPQVSSSQIYDESKVSDAVHSIVNSRPKLDWDRVRSEMME-GTRNAT 552 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 IAPT +I+ I S SI+P Y +Y++ + + +N FL + L++ + + I Sbjct: 553 MTTIAPTGSISIIADASSSIEPFYSLIYIRQSSLFSWVELNRFLRDWLQESNNLNAEKIK 612 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEP 880 D+ H GS+ + +P D++ + TA +ID W + + Q+W+D A +++N+ D Sbjct: 613 DVIRHGGSVRGLSWVPSDVQAVLGTALDIDWRWHVRMQAVFQRWVDNAVSKTVNMRRDA- 671 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 + + ++ +AW + K R +S S + +D + P Sbjct: 672 TVDDVKGVFIEAWRLKCKGITVFRDQSKGVQVMSVNQNIDALIREPP 718 >gi|16330926|ref|NP_441654.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803] gi|3914655|sp|P74240|RIR1_SYNY3 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|1653420|dbj|BAA18334.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803] Length = 767 Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 210/677 (31%), Positives = 344/677 (50%), Gaps = 47/677 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ DG+ N ++ +V+ AC GL+ V+S + + + +G+S +++ LI Sbjct: 30 RIQVIRRDGSSTPLNIGKIRAVVDWACLGLE-VNSIALEAGLTTRLREGISTREIQDNLI 88 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV-YKKPQKATHHEMQCLYPEYFCRYIE 261 + + EP++ V R + L ++ L Y+ Q + + EY Sbjct: 89 SCALEMCSPNEPDWRYVAGRLHVWSLWKDTLVRRGYQYGQYLRTVQTKVTNGEY------ 142 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +R+L S + +L + + D ++Y G +L RY L E+PQ Sbjct: 143 ---DSRILTYS--EGELQEAGCWINSDWDTDYDYAGAVLLTSRYLLPN-----ELPQEAL 192 Query: 322 MRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + A+ LA E + + A FY +++ +TP L N L+SCF+ + D+ Sbjct: 193 LTCALLLASVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGGSLTSCFIVAMEDN 252 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L IFG + A ++K GG+G + + +R G+ + G S GVIP+ K+ NDTA+AVN Sbjct: 253 LESIFGEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVN 312 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG+R GAV L+ WH+DV EFL+++ GD RR+ +D+ +PD FM+RV W Sbjct: 313 QGGRRAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILPDEFMRRVINKEDW 372 Query: 500 TLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TL P EV +L +L+G++FE AY E D I ++++I+A L+++++ Sbjct: 373 TLVDPYEVREKMGIELAELWGEQFEGAYREIESNLDT-TITLYKRINARELFKQIMRTQV 431 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHFAN 613 ETG P+++FKD N +P +H+G + +NLC E N + + A CNL S+NL AN Sbjct: 432 ETGMPYLSFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCCNLVSLNL----AN 487 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D +A + AVR+LDN I++ AK N+ +R IG+G MG L + Sbjct: 488 --LDLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGAMGLADWLAKRRLN 545 Query: 674 YASPEAVEIADESMEF--ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y E+AD + F I + +S+ELA+ERGAY +F GS W +G+ IG ++ Sbjct: 546 YD-----ELADINRLFEEIGYWCTQSSMELAKERGAYPAFPGSDWQKGLL----IG--SK 594 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W++L ++T G+RNS+ AIAP + + + G + SI P Y + Sbjct: 595 PVSWFQANAAKPERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFY 654 Query: 792 KSNMSGDFTVVNSFLVN 808 G + F+ N Sbjct: 655 DKWAKGTVPIAPPFIGN 671 >gi|255025076|ref|ZP_05297062.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes FSL J2-003] Length = 624 Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 204/545 (37%), Positives = 288/545 (52%), Gaps = 54/545 (9%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270 P + AR L KL YKK K + Y Y E G+ + + Sbjct: 82 PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 ++ DL+ + E+D F Y GL +L RY L + R E+PQ ++ +A+ L Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192 Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 E KEKR E Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ Sbjct: 193 MQNEP-KEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V+Q G+RK Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371 Query: 506 EVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 EV L D Y + F YE E AD E + + A+ + ++++ E Sbjct: 372 EVKAKKGWYLQDFYDESKGEGTFREKYE--ELVAD--ETISKKIVKAIDIMKRIMMSQLE 427 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEE 596 TG+P++ ++D N +P +H G+V+SSNLCTEI N S + + Sbjct: 428 TGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGD 487 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+NL + ++L I VR+LDNVID+N + +A +N +R+I Sbjct: 488 FVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSI 544 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKGS W Sbjct: 545 GLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDW 604 Query: 717 DQGVF 721 + G + Sbjct: 605 NTGEY 609 >gi|332185596|ref|ZP_08387344.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas sp. S17] gi|332014574|gb|EGI56631.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas sp. S17] Length = 638 Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 222/686 (32%), Positives = 326/686 (47%), Gaps = 107/686 (15%) Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ + RD G + L DRY L E Q F+RVA A + + A Y Sbjct: 45 EVDHARDARLTDFGKETLNDRYLLPG-----ESYQDLFVRVASAYA----DNAEHAQRLY 95 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + +S FM +TP L N GT SC+L +VPD L GI EN LA GG+G Sbjct: 96 DYISKLWFMPATPVLSNGGTGRGLPISCYLNSVPDSLDGIVTTWNENVWLASRGGGIGTY 155 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 W VRG+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL Sbjct: 156 WGQVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFL 214 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 ++RK +GD R+ +++ IPD FM+ V A W L SP Sbjct: 215 EIRKPSGDFNRKALNLHHGVLIPDAFMEAVRDGAEWHLKSPKT----------------- 257 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580 GE++ + A AL++K++ TG P+I F D N P+ H +G+ V Sbjct: 258 --------GEVRA--TVDARALFQKLVETRLATGEPYIVFADHVNKNMPKHHRELGLKVS 307 Query: 581 SSNLCTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +SNLC+EITL + ++ TAVC L S+NL +++ DK I +R LDNV Sbjct: 308 TSNLCSEITLPTGLDHKGNDRTAVCCLSSLNLETW---DEWKDDK--QFIEDVMRFLDNV 362 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ID + +E+A S R++GLG+MGF S L +P+ A + I+ Sbjct: 363 LQDYIDRHEPGMERAAYSAARERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRMFKHIN 422 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 AS+ LA ERG D GV Sbjct: 423 AQVNQASMTLAAERGPCPDAA----DVGV------------------------------- 447 Query: 752 RVKTIGMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 M +C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L Sbjct: 448 ------MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKL 501 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L ++ +A+ + + H GS+ +++ + + K T+FEID WL+E A R +IDQ Sbjct: 502 LIEKSKNSDAVWNSILEHGGSVQHLDFLSPEEKDTFKTSFEIDQRWLLELAGDRTPYIDQ 561 Query: 870 AQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 AQSLNL++ K L ++ +AW +G+K+ YYLRS+ SV+++ G G + Sbjct: 562 AQSLNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSK---SVQRAGFAGSGGVEADNTI 618 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + P T EC CQ Sbjct: 619 SAPKFEI------GETTDYDECLACQ 638 >gi|194377960|dbj|BAG63343.1| unnamed protein product [Homo sapiens] Length = 454 Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 161/429 (37%), Positives = 252/429 (58%), Gaps = 17/429 (3%) Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 MKRV N W+L P+E L +++G+EFE Y +YE+Q +V + + A LW + Sbjct: 1 MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAI 55 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 + ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L Sbjct: 56 IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNM 115 Query: 610 HF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A Sbjct: 116 YVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFI 175 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 176 LMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNV 235 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N Sbjct: 236 TP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSN 285 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T Sbjct: 286 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTV 345 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R Sbjct: 346 WEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRP 405 Query: 908 ATSVEKSTL 916 A + + TL Sbjct: 406 AANPIQFTL 414 >gi|330889423|gb|EGH22084.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. mori str. 301020] Length = 264 Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/267 (55%), Positives = 191/267 (71%), Gaps = 20/267 (7%) Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSN 762 RGAY +F+GSLW +G+ P+DS +L E R E + ++ L W ++ RV+ G+RNSN Sbjct: 1 RGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSN 59 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+ Sbjct: 60 IMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMIN 119 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SG Sbjct: 120 DLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASG 179 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV----------PVTDPN 932 KKLD YR AW GLKT YYLR+ +ATS EKST+ GKLNAV +T P Sbjct: 180 KKLDVTYRMAWYRGLKTPYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPR 237 Query: 933 SSTHS----LGIPSSCTSD-TECEVCQ 954 + + +P +C D +CE CQ Sbjct: 238 PTEAAPVGPAPVPKACAIDEPDCEACQ 264 >gi|156564206|ref|YP_001429716.1| nrd alpha subunit [Bacillus phage 0305phi8-36] gi|154622903|gb|ABS83783.1| nrd alpha subunit [Bacillus phage 0305phi8-36] Length = 767 Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 212/670 (31%), Positives = 323/670 (48%), Gaps = 102/670 (15%) Query: 289 RDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNL 345 +D F ++GL +L DRY GS E+PQ M +A+ + E + + A E Y Sbjct: 137 KDSLFNFIGLFLLNDRYAATDYQGSLYELPQERLMMIAVTTMINEPKATRLAHIKELYWA 196 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 LS+ + +TPT N+G + QLSSCF+ V D L GI+ + + A L+K GG+ ++ Sbjct: 197 LSNLYATAATPTFANAGKSYGQLSSCFIDKVDDSLDGIYLSNMDAARLSKDGGGVALYFS 256 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR LG+ I G GKS G P++K+ N TA+ V+Q G+RKGA Y+ H D+ +FL+L Sbjct: 257 KVRALGSPIKGFEGKSSGTTPWIKMFNQTAITVDQLGQRKGAFAIYMCLDHKDIMKFLEL 316 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKR---VTQN----AGWTLFSPDEVSD--------- 509 N GD+ R ++ T +PDLFMK+ V +N W F P ++ Sbjct: 317 GLNNGDEADRAREIFTGVAVPDLFMKKLDEVDENGRSIGQWHTFCPHQIKQHMQWKDENG 376 Query: 510 ----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 L D Y ++ YE +A + A+ + +++ + ETG P++ ++D Sbjct: 377 NLLTLDDFYDEKDTKYYEEKYMEAVNNPLLPRDTHRAMDIMVRIMEIQLETGMPYMFYRD 436 Query: 566 PCNIRSPQQHV-GV----VHSSNLCTEITLNSSSE--------------------ETAVC 600 N +P +HV G+ ++ SNLCTEI N S E VC Sbjct: 437 QVNRMNPNKHVHGIGRTAIYCSNLCTEIAQNQVSSMIIGEYIDENENIHMVRSPGEYVVC 496 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL S+NL LA IR R+LDN+IDIN ++ +A +N +R IG+G Sbjct: 497 NLASVNLAKAVPAGV-----LARVIRIVTRMLDNIIDINTISVLQAGITNKRYRPIGMGA 551 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G+ L +L + + S AV AD E ++H I +SVELA+E+G Y F+GS W G Sbjct: 552 YGWHHLLAILGLDWESEAAVNYADTLYEEFAYHVIDSSVELAKEKGTYKYFEGSAWHTGE 611 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + + RD ++ W LK++V G+RN MA+AP AT A + G + Sbjct: 612 Y--------FDQRDYVSAK------WKALKEKVAKFGVRNGWMMALAPNATTAKVGGSTD 657 Query: 781 SIDP--SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 DP + + K N F V L D + N+ R Sbjct: 658 GNDPITAVEGAEEKGNFK--FKVTAPGL---------------------DHNTYNVYR-- 692 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 T ID +W ++ +++Q+ IDQ+ S NLY+ + G +L I++ A +G+ Sbjct: 693 -------KTRHHIDQLWSVKQTAKKQRHIDQSISFNLYVASDIDGAELLNIHKTAHKLGI 745 Query: 898 KTTYYLRSRS 907 KTTYY++ S Sbjct: 746 KTTYYVKGES 755 >gi|224539246|ref|ZP_03679785.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus DSM 14838] gi|224519128|gb|EEF88233.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus DSM 14838] Length = 708 Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 220/682 (32%), Positives = 345/682 (50%), Gaps = 93/682 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG ++ K++ AI K+F + +++T++T+ L+ + Sbjct: 1 MEITKRNGMAEPYNKEKVAIAIRKSFASTG--------------QSVTDETILTLVNEVE 46 Query: 89 SALIV-----HIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAP 140 + ++ H+E IQD+VE SLM+ G + + Y+LYR +R++ R A +H D Sbjct: 47 NFILSDTGNRHVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALNHIVNETGDET 106 Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLE 199 I LK + D ++ S +L+E + + Y ++ ++ Sbjct: 107 ITDTLKGIGQDFP--------------------RNEYSLTLLAEKFSSFYKPEMTPNERL 146 Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 TALI ++ L +E P++ + AR L +L + K ++A + Y + R Sbjct: 147 TALIKAAVELTTQEAPDWEFIAARLLNFQLSK-------KLTEQAEFAGVLSFYEK--LR 197 Query: 259 YI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316 Y+ +EG+ + S ++ +A + ERD F Y GL +L RY + IE Sbjct: 198 YLTDEGLYGSYILASYSPEEIEEVAGFICPERDKLFNYSGLDLLVKRYLIRTRSHEPIES 257 Query: 317 PQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ +A+ LA+ E + V +FY+LLS +TPTL N+ + QLSSCF+ T Sbjct: 258 VQEMYLGIALHLAMPERHNRLQWVRKFYDLLSKLEVTMATPTLANARKPYHQLSSCFIDT 317 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD L GI+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTA Sbjct: 318 VPDSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTA 377 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRV 493 VAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF M + Sbjct: 378 VAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKE 437 Query: 494 TQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 N W LF P+E+ L D YG+E+E Y + + + R +S + R Sbjct: 438 DLNQSWYLFCPNEIMTIKGYCLEDYYGEEWEKRYLDCVNDSRLSK----RSMSIKDIVRL 493 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 +L ETG P+ +D N +P H G+++ SNLCTEI N S+ ET Sbjct: 494 VLRSAVETGTPFTFNRDAVNRANPNNHRGIIYCSNLCTEIAQNMSAIETVSTEIRTEDGD 553 Query: 598 ------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 VCNL S++ L H D ++ + T VR LDNVID+N + I Sbjct: 554 MVVVKTVRPGDFVVCNLASLS-LGHLPLE--DEQQMKEKVATVVRALDNVIDLNFYPIPF 610 Query: 646 AKKSNHTHRAIGLGLMGFQSAL 667 A+ +NH +R+IGLG+ G+ AL Sbjct: 611 AQITNHHYRSIGLGVSGYHHAL 632 >gi|323446056|gb|EGB02379.1| hypothetical protein AURANDRAFT_13764 [Aureococcus anophagefferens] Length = 343 Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 154/351 (43%), Positives = 214/351 (60%), Gaps = 14/351 (3%) Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 ++G+ E PQ MRVA+G+ + A+E Y ++S F +TPTLFN+GT PQL Sbjct: 1 LDGAIAERPQHMIMRVALGI---HGDDLAGALETYEMMSQKMFTHATPTLFNAGTPRPQL 57 Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + +D + GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P Sbjct: 58 SSCFLLAMKEDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPM 117 Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 L+V NDTA V+QGG +RKG+ YLE WH D+E +LDL+KN G++ R D+ WIP Sbjct: 118 LRVYNDTARYVDQGGGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIP 177 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFMKRV N W+L P+E L D +G EFE YE YE E + + I A LW Sbjct: 178 DLFMKRVEANGFWSLMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLW 232 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +L ETG P++ +KD CN +S Q+H+G + SSNLCTEI ++S+E AVC L SIN Sbjct: 233 FAILDSQVETGTPYMLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASIN 292 Query: 607 LLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 L AH FD+ KL T + L+ V+D+N + +E+AK SN H Sbjct: 293 LTAHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKH 343 >gi|149185042|ref|ZP_01863359.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter sp. SD-21] gi|148831153|gb|EDL49587.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter sp. SD-21] Length = 679 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 220/679 (32%), Positives = 326/679 (48%), Gaps = 102/679 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA A + + A Y+ +S Sbjct: 90 RDDLLTEFGKETLEDRYLLPG-----ESYQDLFARVADAFA----DDQDHAQRLYDYISR 140 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SC+L +V D L GI EN LA GG+G W VR Sbjct: 141 LWFMPATPVLSNGGTQRGLPISCYLNSVSDSLDGIVNTWNENVWLASKGGGIGTYWGNVR 200 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++RK Sbjct: 201 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDVTHPEIEEFLEIRKP 259 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V + L SP + S Sbjct: 260 SGDFNRKALNLHHGVLVTDAFMEAVRNGEEFDLLSPKDGS-------------------- 299 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 V + + A +L++K++ TG P+I F D N P+ H +G+ V +SNLC Sbjct: 300 -------VRKTVDARSLFQKLVETRLATGEPYIVFSDTVNRMMPKHHRDLGLKVSTSNLC 352 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDK--LASTIRTAVRVLDNVIDI 638 EITL + ++ TAVC L S+N+ ++++ DK + +R VL N ID Sbjct: 353 AEITLPTGIDHLGNDRTAVCCLSSLNIEKW---DEWNTDKQFIEDIMRFLDNVLQNYIDR 409 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++GLG+MGF S L I + SP A + + I A AS Sbjct: 410 APDEMARAKYSAMRERSVGLGVMGFHSFLQQKGIGFESPMAKVWNLKMFKHIQSKASEAS 469 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LAQERGA + D AM R S Sbjct: 470 MVLAQERGA---------------------CPDAEDMGAMERFS---------------- 492 Query: 759 RNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ Sbjct: 493 ----CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKSKN 548 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 A+ + + GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL+ Sbjct: 549 STAIWNSILEKGGSVQHLDFLTPEEKATFKTSFEIDQRWLLEFAADRAPYIDQAQSLNLF 608 Query: 877 LDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + K L ++ QAW G+K+ YYLRS+ SV+++ G G + A D ++ Sbjct: 609 IPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEADNTAD--AAK 660 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + L + T EC CQ Sbjct: 661 YELAAGAEQTDYEECLACQ 679 >gi|307596370|ref|YP_003902687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Vulcanisaeta distributa DSM 14429] gi|307551571|gb|ADN51636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Vulcanisaeta distributa DSM 14429] Length = 895 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 217/786 (27%), Positives = 380/786 (48%), Gaps = 67/786 (8%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +S S+L + ++ + + +LL + ++V K + + Y Sbjct: 56 VSSSELSDKVQLIMLNMVTDDLKWHDAARNYLLWSVYKQVWGKDVVKAINEGRVKFEDAY 115 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY---ERDFAFEYLGLQILYDRYFL-H 308 E F + G++ R+ M + ++ KY RD Y G++ L RY L Sbjct: 116 REGFKAWFRTGLELRIWDSEMSAWYAQHIDELAKYLDPSRDLLLTYNGVRTLMSRYLLKR 175 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAV----EFYNLLSSFHFMCSTPTLFNSGTR 364 ++GS E+PQ +MR AMG+A E + FY+L+S FM ++PTL+N+ TR Sbjct: 176 LDGSFFEVPQYLWMRTAMGVAYAELRYGGDPITWTRRFYDLMSQLRFMPNSPTLYNAMTR 235 Query: 365 HPQLSSCFLTTVPDDL--------------YGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 QLS+CF+ + D L +GI AL+ A++ + GG+G ++ +R Sbjct: 236 LGQLSACFVVPIDDCLSRESDTNREDPECNFGIMDALRLAALIFQSGGGVGYNFGKLRPE 295 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G + T G + G + F+K+ + + QGGKR+GA L WH D+E+F+ + Sbjct: 296 GDIVRSTTGIASGPLSFMKLFDTLVDTIKQGGKRRGAQMGMLFWWHPDIEKFITSKSGEL 355 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D + + N + I D FM++ + L +P E L+ +G+EF YE Sbjct: 356 KDIQ-LQNFNISVTIDDYFMQKALKGEDIYLINPRECPCLYKTWGEEFVKCYEGCVEAIK 414 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589 G+++++R+++A LW K++ +++G P + +D N + ++ G V++++N C+E + Sbjct: 415 AGKVRIWRRVNAKELWDKIVKSAWDSGDPGLWNRDLANYINNEKLPGEVINATNPCSEES 474 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L + CNLGSINL+ + + D+D LA ++ AVR LD+VID+N E+ +K Sbjct: 475 LY----DFESCNLGSINLVKYVHEGRIDWDSLARDVQLAVRFLDDVIDVNKLPHERLRKR 530 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 R IGLG G L L + Y SP+A+ +++E FI+ A+ AS+ELA+E+G Y Sbjct: 531 VLETRRIGLGANGLADTLIALGLRYDSPQALAVSNELASFIARMAVRASIELAKEKGVYP 590 Query: 710 SFKGSLWDQGVFPI----DSIGLLAEVRDELAMN---RTSRLPWDELKKR---------- 752 ++K S W +GV P + + + D+ A++ +T + +++ K R Sbjct: 591 AYKHSDWAEGVLPWTKHRERLEKFSSTIDKEAVDEYMKTLDVGYNDPKVRAIIDGSTAVL 650 Query: 753 -------------VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 V T+G+RN + M+IAP + + I GV+ SI+P + Y+++ G Sbjct: 651 KGYRALDSDLSIDVSTVGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKL 710 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 N + L Q DE+ ++ + G + + D L+ TA EI W + Sbjct: 711 IEYNYTALRLLMQTKTLDESTRRFVEEY-GILPRDHPLADLLR----TAHEIHWKWHVYM 765 Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTL 916 +W D ++++N+ D P + ++ YR AWL+ T Y + V + + Sbjct: 766 QVTWARWNDSGVSKTINMPSDTPM-EDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGV 824 Query: 917 KGVDGK 922 KG + K Sbjct: 825 KGAEAK 830 >gi|148554423|ref|YP_001262005.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingomonas wittichii RW1] gi|148499613|gb|ABQ67867.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas wittichii RW1] Length = 653 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 213/650 (32%), Positives = 320/650 (49%), Gaps = 101/650 (15%) Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ + RD G + L DRY L E Q F+RVA A + + A Y Sbjct: 63 EVDHSRDALLTDFGKETLTDRYLLPG-----ESYQDLFVRVASAYA----DDQPHAQRLY 113 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + +S FM +TP L N GT SC+L +V D L GI EN LA GG+G Sbjct: 114 DYISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTY 173 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 W VRG+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL Sbjct: 174 WGSVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAAVYLDVSHPEIEEFL 232 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 ++RK +GD R+ +++ + D FM+ V A W L SP + S Sbjct: 233 EIRKPSGDFNRKALNLHHGVLLTDAFMEAVRDGAEWDLVSPKDGS--------------- 277 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580 +R + + A AL++K++ TG P+I F D N P+ H VG+ V Sbjct: 278 --KRSS----------VDARALFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDVGLKVS 325 Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +SNLC+EITL + ++ TAVC L S+NL ++++ DK + +R LDNV Sbjct: 326 TSNLCSEITLPTGRDQHGMDRTAVCCLSSLNLETW---DEWNGDK--RFVEDVMRFLDNV 380 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ID + +AK S R++GLG+MGF S L +P+ A + I+ Sbjct: 381 LQDYIDRAPDEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHIA 440 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A AS+ LA ERG D GV Sbjct: 441 AAAAEASMLLASERGPCPDAA----DLGV------------------------------- 465 Query: 752 RVKTIGMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 M +C MAIAPTA+I+ IC G S I+P N+Y +SG F++ N +L Sbjct: 466 ------MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIKNPYLQKL 519 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L ++ +A+ + + GS+ +++ + D K ++ T+FEID WLIE A+ R +IDQ Sbjct: 520 LAEKSKDSDAVWNSILEKGGSVQHLDFLTQDEKDVYKTSFEIDQRWLIELAADRTPYIDQ 579 Query: 870 AQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AQSLNL++ K L ++ +AW +G+K+ YYLRS+ SV+++ G Sbjct: 580 AQSLNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSK---SVQRAGFAG 626 >gi|323650973|ref|YP_004243616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. natto] gi|323461613|dbj|BAJ77029.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. natto] Length = 789 Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 211/711 (29%), Positives = 349/711 (49%), Gaps = 77/711 (10%) Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYI---EEGVKARLLHESMMDFDLVYLANDLKYER 289 L +YK+ K ++ + Y +++ + E+G+ + + +LV N + ER Sbjct: 104 LQELYKRASKNRSYDSKEKYGDFYGLIVTLTEKGLYTPDILANYTREELVKAGNSIVPER 163 Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL-KETEKEKRAVEFYNLLS 347 D F++ GL L RY + + S E+PQ FM A+ L + +E ++ ++A+E Y LS Sbjct: 164 DELFDFAGLHSLSGRYCVKDFDKSVYELPQERFMIAALHLMMPEEKDRVEKAIELYWALS 223 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + + +TPTL N+G LSSCF+ T D L GIF + + +K G+G + + Sbjct: 224 NLYLTLATPTLMNAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFGKL 283 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R G+ I G G + G++ ++K ++TAV+V+Q G+R GAV YL+ WH D+E+F+DLR Sbjct: 284 RATGSDIRGHKGAASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDLRL 343 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE----- 517 NTGD +R +++ T IPD FM++V + + LF P E+ L D Y K+ Sbjct: 344 NTGDKSKRAYNVFTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLGEK 403 Query: 518 -----FEIAYE-NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + A+ +Y D + R++ A+ L ++ + ETG P++ ++D N + Sbjct: 404 ETPNPIDHAWTYHYYLCVDNNNLDK-RRVPAIELKKRYMKAQLETGIPYMFYRDTVNRNN 462 Query: 572 PQQHVGVVHSSNLCTEITLNSS----SEETAVCNLGSINL-----------LAHFANNQF 616 P H G+++SSNLC+EI N S ++ET G + + L+ N+ Sbjct: 463 PNSHSGMIYSSNLCSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNRT 522 Query: 617 DYDKLAS-TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 + D + I+ +R LDNVI + + +A+ +N +RA+G G G + L I + Sbjct: 523 EKDGVTERVIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIMWD 582 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S +A+E + E I + I AS L +E+G+Y F+GS W G E +E Sbjct: 583 SEQAIEYISKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG-----------EWFEE 631 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 +N L EL + MRN AIAPT + I G + IDP + +Y + Sbjct: 632 RDLNSPEWLEVKELASKY----MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFER-- 685 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 DF + LV EL Q+ + ++Y + ++ +W Sbjct: 686 KKDFHL--PILVPELNQKTWFFYKPTMKMEYENEK-------------------QLAHLW 724 Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905 I+ + RQK++DQA S N Y+ + K ++ + W G+KT+YY RS Sbjct: 725 AIKHNAARQKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 775 >gi|323450453|gb|EGB06334.1| hypothetical protein AURANDRAFT_54285 [Aureococcus anophagefferens] Length = 555 Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 163/470 (34%), Positives = 260/470 (55%), Gaps = 26/470 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++++ +G + ++ +++ C G + + + + + +YDG++ +L+ Sbjct: 7 MQVVKRNGKKETVRYDKITSRIKKLCYGFDAKYIKPNQITQKVIQGVYDGVTTHELDELA 66 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRR---EVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ + + P+++ + AR + L + + + V +K K H + + P Sbjct: 67 AQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEKLHKHVHPKTK--KPAALIS- 123 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 +E H+ ++ +VY +RDF ++Y G + L Y + ++G+ E PQ Sbjct: 124 -DETYATVQKHKDAINAAIVY-------DRDFEYDYFGFKTLERSYLMRLDGAIAERPQH 175 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRVA+G+ + A E Y ++S F +TPTLFN+GT PQLSSCFL + +D Sbjct: 176 MIMRVALGI---HGDDLAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKED 232 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA V Sbjct: 233 SIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYV 292 Query: 439 NQGGKR-KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG+R KG+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV N Sbjct: 293 DQGGRRRKGSFAIYLEPWHADIEMWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANG 352 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P+E L D +G +FE YE YE E + I A LW +L ETG Sbjct: 353 FWSLMCPNECPGLADCHGAKFEALYERYE-----AEGCARKAIPAQQLWFAILDSQVETG 407 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 P++ +KD CN +S Q+H+G + SSNLCTEI ++ +E AVCNL SINL Sbjct: 408 TPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINL 457 >gi|126658753|ref|ZP_01729898.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] gi|126620015|gb|EAZ90739.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] Length = 728 Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 205/653 (31%), Positives = 316/653 (48%), Gaps = 85/653 (13%) Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNL 345 E D F++ G +L RY S E+ Q F+ A+ LA+ E E+ A FY Sbjct: 135 ELDKVFDHAGATLLTQRYL-----SDDELIQEVFLVTALVLAIPERMDERMSYARAFYMA 189 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++ +TP L N +SCF+ +V D + IF ++ A +++ GG+G + + Sbjct: 190 IAHRKISLATPILANLRFEGGSGTSCFILSVEDSIESIFDNVKNTARISQEGGGVGINLS 249 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R +G+ + S G++ ++++ NDTA+AVNQGG+R GAV + WH+D+ EFL++ Sbjct: 250 RIRAVGSWVRSKPNVSGGLMSWIRILNDTAIAVNQGGRRAGAVTVAADIWHLDIPEFLEM 309 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEI 520 R GD RR+ +D+ + D FM+RV Q A WTL P EV DL +L+G EF+ Sbjct: 310 RSEAGDQRRKAYDVFPQVVVTDNFMRRVEQGATWTLVDPYEVKQVLGIDLPNLWGTEFDD 369 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 AYE E A G++ + + ++A L+ +L ETG P+I FKD N +P +H+G++ Sbjct: 370 AYEQIEEAASMGDLTLAQTVNARNLFIDILETQVETGLPYIAFKDALNRANPNKHIGIIP 429 Query: 581 SSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 S NLC E ++ + CNL S+NL Q + D+L + AVR+LDN ID+ Sbjct: 430 SVNLCCESFSVVVPGKLAHSCNLASVNLA------QVEDDELPEICQLAVRLLDNTIDVT 483 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 I +A+ N R IG+G++G L + Y EI + EF S+ + SV Sbjct: 484 TAPIGEARNHNRELRTIGVGVLGLADYLAKRGLRYQDKR--EIRELFKEF-SYQCLMGSV 540 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 LA+ERG+Y + S + G + L +R+ R W L G+R Sbjct: 541 LLAKERGSYPAINSSEYGMG--------------NILGKSRSQRPEWKALYDLFDFYGIR 586 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS+ MAIAP + + I G + S+ P Y +S GD FL R+ D Sbjct: 587 NSHIMAIAPNTSSSLIQGCTASVLPPYAKFNAESLGKGDVMKAVPFL------REYGD-- 638 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878 Y + ID ++++ + QKW+D S+ L + Sbjct: 639 -----NYQENQ-------------------RIDQRVVVDAIAEMQKWVDTGISMELVFNL 674 Query: 879 -----EPSGKKLDF--IYR---QAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 EP+ K +D IY +AW GLK YY+R +V++ L VDG Sbjct: 675 NPDVYEPN-KTVDASDIYDTALRAWRRGLKAIYYIR-----TVKEDRLSEVDG 721 >gi|114327551|ref|YP_744708.1| ribonucleotide-diphosphate reductase subunit alpha [Granulibacter bethesdensis CGDNIH1] gi|114315725|gb|ABI61785.1| ribonucleoside-diphosphate reductase alpha chain [Granulibacter bethesdensis CGDNIH1] Length = 650 Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 215/647 (33%), Positives = 307/647 (47%), Gaps = 97/647 (14%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY + E Q F RV+ + + A Y+ +S Sbjct: 61 RDALLTDFGKATLNDRYLMPG-----ESYQDLFARVSSYYG----DNAEHAQRIYDYMSR 111 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SCFL D L GI G EN LA GG+G+ W +R Sbjct: 112 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVGLWNENVWLASKGGGIGSYWGNLR 171 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++LR+ Sbjct: 172 SIGEKV-GQNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFVELRRP 230 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + S Sbjct: 231 TGGDPNRKALNLHHGVLLSDAFMRAVDHDEEWALLSPKDKS------------------- 271 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNL 584 V RKISA ALW ++LT E G P+I F D N P Q+ G+ V +SNL Sbjct: 272 --------VIRKISARALWIRILTARMEQGEPYIVFSDHVNRALPEHQKLAGLEVKTSNL 323 Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635 C+EITL + + TAVC L S+NL A + + I + LDNV Sbjct: 324 CSEITLPTGIDQHGKQRTAVCCLSSLNLETWHA-----WKDHPTFIEDVMLFLDNVLQDF 378 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID T+E+A+ S R++GLG+MGF S L +P+ S A + I A Sbjct: 379 IDRAPDTMERARYSAMRERSVGLGVMGFHSFLQAERVPFESVVAKVWNLRMFKHIRAQAD 438 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS LA ERGA D G Sbjct: 439 KASRMLAAERGACPDAA----DYG------------------------------------ 458 Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 + R SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L +R Sbjct: 459 LNERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQQLLAERG 518 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +E + S + + GS+ +++ + + K + TAFE+D W+IE A+ R +I Q+QS+N Sbjct: 519 QDNEDVWSSITLNKGSVQHLDFLTEAEKAVFKTAFELDQRWIIEHAADRTPYICQSQSVN 578 Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 L+L K+ L ++ AW GLK+ YY RS S + + K V+ Sbjct: 579 LFLPANVHKRDLHQVHMLAWKRGLKSLYYCRSLSIQRADAVSEKAVN 625 >gi|15921522|ref|NP_377191.1| ribonucleoside-diphosphate reductase large subunit [Sulfolobus tokodaii str. 7] gi|15622308|dbj|BAB66300.1| 831aa long hypothetical ribonucleoside-diphosphate reductase large subunit [Sulfolobus tokodaii str. 7] Length = 831 Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 201/677 (29%), Positives = 345/677 (50%), Gaps = 62/677 (9%) Query: 288 ERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE-----TEKEKRAV 340 ERD Y L++L RY L N R IE PQ F RVA LA E +E E + + Sbjct: 109 ERDLLLTYNALKVLEARYLLKDPNTLRYIETPQMMFRRVAKHLANVERQYGRSESEVKQL 168 Query: 341 E--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAML 393 E FY ++S F+ +TPTL NSGTR LS+CF+ V D + GI+ AL+ A++ Sbjct: 169 EEKFYKIMSELKFLPNTPTLMNSGTRLGILSACFVIPVRDSMITPNGEGIYDALRAMAVV 228 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 + GG G D++ +R G + T G + G + F+++ + + V QGGKR+GA + Sbjct: 229 HQQGGGTGFDFSELRPKGDIVASTAGVASGPVSFMRIFDVSTDVVKQGGKRRGANMGVMH 288 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK-------------RVTQNAGWT 500 WH D+EEF+ + D + + N + + D FM+ R T+ A W Sbjct: 289 VWHPDIEEFIKSKTGQLKDTQ-LQNFNISVGVYDYFMQAVERGDVVPLINPRKTKIADWD 347 Query: 501 LFSPDEVSDLHDLYGKEFEIA-YENYERQADRGEIKVF---------RKISAVALWRKML 550 + +++ + +E ++ E D E K+ K +A+ W Sbjct: 348 YYMSKARGYMNEEWIQEVILSELEEKGGTVDLAESKIITIDEALVIAEKENAITQWVNAR 407 Query: 551 TML-------FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 + +++G P + F D N R P ++G ++++N C E L CNLG Sbjct: 408 NLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYLGKINATNPCGEEPLLPWES----CNLG 463 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL + + D+D LA TIR AVR+LDNVID N + +++ +++ R +GLG+MG Sbjct: 464 SINLEKFVVDGKIDWDGLAETIRYAVRLLDNVIDANRYPLKQIEEATKKTRKVGLGVMGL 523 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL----WD-- 717 L L IPY S +AV ++ + +FI +HA S+E+A+E+G++ ++ L W+ Sbjct: 524 ARMLIKLGIPYDSVDAVYLSYQLAKFIYYHAFKESIEIAKEKGSFPAYDAKLYKDIWESA 583 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + + I I + + + TS +L +D+LK+ G+RN+ +++APT TI+ Sbjct: 584 KDFYEILEIMGIKDKPSDYVKKLTSIVDKLDFDKLKEDRIKYGLRNATVVSVAPTGTISI 643 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G S SI+P + ++++ G F ++ ++ L++ +L + ++ + G IG+ Sbjct: 644 IAGTSSSIEPLFALAFIRNVAVGKFMEIDPLFLDYLRKYELDNPEVVKKIA-ETGMIGDN 702 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQA 892 +P ++K+ TA E+ P + + + Q+W D ++++NL +EP + ++ +Y A Sbjct: 703 PFMPKSMRKVFRTAHEVSPEYHLLHQAAWQQWNDSGTSKTINLRSEEPP-ETVERVYMLA 761 Query: 893 WLMGLKTTYYLRSRSAT 909 W +G+K R +S + Sbjct: 762 WKLGIKGVTVYRDKSKS 778 >gi|83859673|ref|ZP_00953193.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis alexandrii HTCC2633] gi|83852032|gb|EAP89886.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis alexandrii HTCC2633] Length = 626 Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 218/676 (32%), Positives = 323/676 (47%), Gaps = 101/676 (14%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RV+ A + + A Y+ +S+ Sbjct: 42 RDALLTDFGKKTLVDRYLLPG-----ESYQDMFARVSTAYA----DDLEHAQRLYDYMSN 92 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL +V D L I EN LA GG+G W VR Sbjct: 93 LWFMPATPVLSNGGADRGLPISCFLNSVDDSLGDIVSTWTENVWLASNGGGIGTYWGNVR 152 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G NG++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 153 SIGEKV-GQNGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 211 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ + D FM+ V ++ + L SP Sbjct: 212 SGDFNRKSLNLHHGLNVSDAFMEAVAKDEEFELISPRS---------------------- 249 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 GE V + ++A LW+K+L + +TG P+I F D N P Q+ +G+ V SNLC Sbjct: 250 ---GE--VVKTVNARKLWQKILEVRLQTGEPYILFSDTVNNNLPAHQRKLGLKVRQSNLC 304 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +EITL + ++ TAVC L S+N F + D L R +L + I+ Sbjct: 305 SEITLPTGVDHLGNDRTAVCCLSSLN-AEKFLEWKDDERFLEDIFRFLDNILQDFIERAP 363 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+AK S R++GLGLMGF S L +++P+ S A + I A ASV+ Sbjct: 364 DEMERAKYSAARERSVGLGLMGFHSFLQSMNVPFESAMAQSWNKRMFQHIRQGADKASVK 423 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERGA D GV R Sbjct: 424 LAEERGACPDAA----DNGV------------------------------------KARF 443 Query: 761 SNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 S+ +AIAPTA+I+ IC G S I+P N+Y +SG FTV N +L L+++ A Sbjct: 444 SHKLAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPYLEKILEEKGKNTPA 503 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + S + H+GS+ +++ + + K + TAFE+D W+IE A+ R +I QAQSLNL+L Sbjct: 504 VWSSILEHEGSVQHLDCLDELEKDVFKTAFELDQRWVIEHAADRSPYICQAQSLNLFLPG 563 Query: 880 PSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 K L ++ AW G+K+ YY RS+ SV+++ G K D S + S Sbjct: 564 DVNKWDLHMLHWSAWEKGVKSLYYCRSK---SVQRAAYAGAGEK-------DEMSKSLSD 613 Query: 939 GIPSSCTSDTECEVCQ 954 P EC CQ Sbjct: 614 AAPKDY---DECLACQ 626 >gi|159041217|ref|YP_001540469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caldivirga maquilingensis IC-167] gi|157920052|gb|ABW01479.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caldivirga maquilingensis IC-167] Length = 877 Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 209/699 (29%), Positives = 335/699 (47%), Gaps = 67/699 (9%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 L N L RD Y G++ L RY + ++GS E PQ +MR+AMG+A E + Sbjct: 149 LMNKLDPSRDLLLTYNGVRTLMSRYLMKRLDGSFFETPQYMWMRIAMGVAYSEVKYGNDP 208 Query: 340 VE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV------------PDDLYGI 383 ++ FY+L+S F+ ++PT+FN+ T+ +LS+CF+ V P+ +GI Sbjct: 209 IKWVEKFYDLVSQLKFLPNSPTMFNALTKLGELSACFVIPVDDCLSKDSNRDNPNCFFGI 268 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A + A+L + G+G + +R G + T+G + G + F+++ + + QGGK Sbjct: 269 MDAAKLAALLFQAGAGVGYQFGELRPEGDVVKSTSGVASGPLSFMRLFDTLVDVIKQGGK 328 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA L WH D+E+F+ + D + + N + I D FM + + L + Sbjct: 329 RRGAQMGMLFWWHPDIEKFITSKTGRLKDVQ-LQNFNISVTIDDYFMTKALRGEDVYLLN 387 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P E + L+ +G+EF YE + G +KV+R+++A LW K++ +++G P + Sbjct: 388 PRECTCLYQTWGQEFIKCYEECVSKVKAGLVKVWRRVNAGELWSKIVESAWDSGDPGLWN 447 Query: 564 KDPCNIRSP------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 +D N++ + V++ +N C E+ L CNLGSINL + N D Sbjct: 448 RDVANMKIEYVNDVVSEKYRVINGTNPCGEVALYPFES----CNLGSINLTKYINGNSID 503 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + LA+ I AVR LD+VID N H E ++N R IGLG+ G+ L L IPY SP Sbjct: 504 WVSLANDIMLAVRFLDDVIDSNQHPHEYLDRANKASRRIGLGINGWADVLVSLDIPYDSP 563 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726 +A+ +AD M F++ A+ ASVELA+E+G + + S W G P ++ Sbjct: 564 KAIALADVVMGFVARVAVRASVELAKEKGPFPLWPSSKWRSGFLPWRVHDERVSKMLEVK 623 Query: 727 GLLAEVRD-----ELAMNRTSRLPW-------------DELKKRVKTIGMRNSNCMAIAP 768 G+ ++V + +L LP DEL K T+G+RN ++IAP Sbjct: 624 GVSSDVEEYLEILKLGYGELGGLPNKAEEYLAKLRATDDELIKDASTVGVRNGALISIAP 683 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + I GV+ SI+P + YV++ G N + +LK + D S + Sbjct: 684 EGSRSLIAGVNSSIEPIFAIAYVRNLSIGKLIEYNYTALRKLKDSNALDNETTSKV-LES 742 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDF 887 G + + + LK TA EI W + KW D S + + + K+ ++ Sbjct: 743 GMLPSNHVMHPVLK----TANEIHWRWHVFMQVTFAKWSDSGVSKTINMPSNATKEDVNG 798 Query: 888 IYRQAWLMG-LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 YR AW +G T Y A V GV+GK A Sbjct: 799 AYRLAWALGAFGITVYRDKSKAVQV---IYTGVEGKGKA 834 >gi|87198299|ref|YP_495556.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium aromaticivorans DSM 12444] gi|87133980|gb|ABD24722.1| Ribonucleoside-diphosphate reductase [Novosphingobium aromaticivorans DSM 12444] Length = 667 Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 219/680 (32%), Positives = 325/680 (47%), Gaps = 106/680 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RVA A + ++ A Y+ +S Sbjct: 80 RDVNLTDFGKDTLDDRYLLPG-----EKYQDLFARVADAYA----DDQEHAQRLYDYISK 130 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI EN LA GG+G W VR Sbjct: 131 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVATWNENVWLASRGGGIGTYWGKVR 190 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 191 GIGESV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFLEIRKP 249 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V A + L SP + S Sbjct: 250 SGDFNRKALNLHHGVLLTDEFMEAVRDGAEFHLRSPKDGS-------------------- 289 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 V + A +L++K++ TG P+I F D N P+ H +G+ V +SNLC Sbjct: 290 -------VRSTVDARSLFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTSNLC 342 Query: 586 TEITLNSS-----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL ++++ DK + +R LDNV I Sbjct: 343 SEITLPTGRDHLGNDRTAVCCLSSLNLETW---DEWNGDK--RFVEDVLRFLDNVLQDYI 397 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK S R++G+G+MGF S L I + S A + + ++ A Sbjct: 398 DRAPDEMARAKYSAARERSVGMGVMGFHSFLQKKGIAFESAMAKAWNLKMFKHVAAKADE 457 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LAQERGA D M R Sbjct: 458 ASILLAQERGA------------------------CPDAAEMGVMQRF------------ 481 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 S MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L + Sbjct: 482 ----SCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLQKLLADKSK 537 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + + + H GS+ +++ + + K ++ T+FEID WL+E A+ R +IDQAQSLNL Sbjct: 538 DSTNVWNSILEHGGSVQHLDFLSVEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLNL 597 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 Y+ K L ++ QAW G+K+ YYLRS+ SV+++ G G + A D + Sbjct: 598 YIPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEA----DNTAE 647 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + + ++ T EC CQ Sbjct: 648 APKIELATAETDYEECLACQ 667 >gi|326386065|ref|ZP_08207689.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium nitrogenifigens DSM 19370] gi|326209290|gb|EGD60083.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium nitrogenifigens DSM 19370] Length = 685 Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 221/681 (32%), Positives = 326/681 (47%), Gaps = 108/681 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA A + A Y+ +S Sbjct: 98 RDALLTAFGKETLDDRYLLPG-----ETYQDLFARVADAYA----DDAGHAQRLYDYISR 148 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI EN LA GG+G W VR Sbjct: 149 LWFMPATPVLSNGGTGRGLPISCYLNSVEDSLEGIVATWNENVWLAARGGGIGTYWGKVR 208 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 209 GIGESV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 267 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V + L SP + S Sbjct: 268 SGDFNRKALNLHHGVLLTDEFMQAVRDGTEFDLKSPKDGS-------------------- 307 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 V +++A AL++K++ + TG P+I F D N P+ H +G+ V +SNLC Sbjct: 308 -------VRGRLNARALFQKLVEVRLATGEPYIVFSDTVNRTMPKHHRDLGLMVSTSNLC 360 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL ++ DKL I +R LDNV I Sbjct: 361 SEITLPTGRDHLGNDRTAVCCLSSLNLETW---EEWHEDKL--FIEDVLRFLDNVLQDFI 415 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + +AK S R++G+G+MGF S L I + S A + I+ A Sbjct: 416 ERAPDEMARAKYSAARERSVGMGVMGFHSFLQKKSIAFESAMAKAWNLKMFRHIAARADE 475 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LAQERG D GV Sbjct: 476 ASLLLAQERGPCPDAA----DMGV------------------------------------ 495 Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 M+ +C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L LK++ Sbjct: 496 -MQRFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLKEKS 554 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + + + GS+ +++ + + K ++ T+FEID WL+E A+ R +IDQAQSLN Sbjct: 555 KDSTNVWNSILERGGSVQHLDFLTPEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLN 614 Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 LY+ K L ++ QAW G+K+ YYLRS+ SV+++ G G + A D Sbjct: 615 LYIPADVDKWDLLMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEA----DNTP 664 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 + + + + T EC CQ Sbjct: 665 AAPVIELEARQTDYEECLACQ 685 >gi|58617310|ref|YP_196509.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia ruminantium str. Gardel] gi|58416922|emb|CAI28035.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia ruminantium str. Gardel] Length = 595 Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 211/646 (32%), Positives = 307/646 (47%), Gaps = 101/646 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + YERD G +L DRY L E Q F+R++ A + + A Y+ Sbjct: 6 VDYERDNNLTVFGKAVLSDRYLL-----ENEDYQQLFVRISEYYA----DNSEHAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G+ GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 117 GNLRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ + D FMK V +A W L SP + S Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQS--------------- 220 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580 V + A +W K+LT ETG P+I F D N P+ + + + Sbjct: 221 ------------VIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268 Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633 SNLCTEITL + + TA+C L S+NL H+ +N+ I +R LD Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYYEHWKDNEL-------FIEDVMRFLD 321 Query: 634 NV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 NV I+ + +E+AK S R+IG+G+MGF S L IP+ S A + Sbjct: 322 NVLTDFIEKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSH 381 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I HA +AS +A E+G K D GV Sbjct: 382 IKKHADAASYRIAIEKGPCPDAK----DAGVME--------------------------- 410 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 R N ++IAPTA+I+ I G S I+P N++ ++G F V N FL Sbjct: 411 ---------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQK 461 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L + ++ + S + ++GS+ +++ + D K + TA+E+D W+IE +S R K+I Sbjct: 462 LLILKGENNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYIC 521 Query: 869 QAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QAQS+N++L K+ L I+ AW GLK+ YY RS+S +K Sbjct: 522 QAQSVNIFLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADK 567 >gi|296116312|ref|ZP_06834928.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter hansenii ATCC 23769] gi|295977131|gb|EFG83893.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter hansenii ATCC 23769] Length = 620 Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 221/680 (32%), Positives = 317/680 (46%), Gaps = 96/680 (14%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L +RY L G Q F RVA E ++ Y+ +S Sbjct: 23 RDALLTAFGKATLDNRYLLPGEGY-----QDLFGRVASYYGADEGHAQR----LYDYISR 73 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 74 HWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYWGNLR 133 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G ++ G NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++LR+ Sbjct: 134 SIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRRP 192 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ I D FM+ V + W L SP + S + Sbjct: 193 TGGDPNRKALNLHHGILISDAFMRAVAADEEWALLSPKDGSHI----------------- 235 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584 RK+SA +LW ++LT E G P+I + D N PQ H G+ V +SNL Sbjct: 236 ----------RKVSARSLWIRILTARMEQGEPYIIYSDHVNNARPQHHKLAGLEVKTSNL 285 Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 C EITL + E TAVC L S+N L + + D + + RVL + ID Sbjct: 286 CAEITLPTGMDHHGKERTAVCCLSSLN-LETWDEWKDDPQFIEDVMLFLDRVLQDFIDRA 344 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +E+AK + R++GLG+MGF S L +IP+ S A E I A +AS Sbjct: 345 PDDMERAKYAAARERSVGLGVMGFHSFLQAKNIPFESVIAKVWNKRIFEHIRKQADAASH 404 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LAQ S+G + + M R Sbjct: 405 KLAQ---------------------SLGACPDAAEYGVMERF------------------ 425 Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L Q+ + Sbjct: 426 -SNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLLTQKGRNTD 484 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + S + + GS+ +++ + K + TAFE+D W+IE A+ R +I QAQS+NL+L Sbjct: 485 DVWSSITLNKGSVQHLDFLDQQEKDVFKTAFELDQRWVIEHAADRAPFICQAQSINLFLP 544 Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV---TDPNSS 934 K+ L I+ AW G+K+ YY RS S + + DGK+ + TD Sbjct: 545 ANVHKRDLHQIHYMAWKRGVKSLYYCRSLSVQRADAVS----DGKVKNDIMQKETDEALP 600 Query: 935 THSLGIPSSCTSDTECEVCQ 954 P+S T EC CQ Sbjct: 601 PIPPAAPASSTDYEECLACQ 620 >gi|85710101|ref|ZP_01041166.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter sp. NAP1] gi|85688811|gb|EAQ28815.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter sp. NAP1] Length = 669 Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 221/681 (32%), Positives = 328/681 (48%), Gaps = 108/681 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA A + ++ A Y+ +S+ Sbjct: 82 RDANLTEFGKETLTDRYLLPG-----EKYQDLFARVADAYA----DDQEHAQRLYDYISN 132 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI G EN LA GG+G W VR Sbjct: 133 LWFMPATPVLSNGGTSRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTYWGNVR 192 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 193 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFLEIRKP 251 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V A + L SP Sbjct: 252 SGDFNRKALNLHHGVLLTDEFMEAVRDGADFDLKSP------------------------ 287 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 GE++ ++A +L++K++ TG P+I F D N P+ H +G+ V +SNLC Sbjct: 288 -KTGEVR--GTVNARSLFQKLVECRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTSNLC 344 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL +++ DK I +R LDNV I Sbjct: 345 SEITLPTGIDHLGNDRTAVCCLSSLNLEKW---DEWSTDK--QFIEDVMRFLDNVLQDYI 399 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +A+ S R++GLG+MGF S L + + S A + + + I A Sbjct: 400 DRAPDEMARARYSAERERSVGLGVMGFHSFLQQKGLGFESAMAKALNLKMFKHIQAKASE 459 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LAQERG P + AM R S Sbjct: 460 ASMLLAQERG---------------PCPDAAEMG------AMERFS-------------- 484 Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ Sbjct: 485 ------CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKS 538 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + + + GS+ +++ + D+ K T+FEID WL+E A+ R +IDQAQSLN Sbjct: 539 KNSTNVWNSILERGGSVQHLDFLTDEEKASFKTSFEIDQRWLLEFAADRAPYIDQAQSLN 598 Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 L++ K L ++ QAW G+K+ YYLRS+ SV+++ G G + A D + Sbjct: 599 LFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEA----DNTA 648 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 + + T EC CQ Sbjct: 649 DAAKFELAAEQTDYEECLSCQ 669 >gi|330994650|ref|ZP_08318573.1| Ribonucleoside-diphosphate reductase large subunit [Gluconacetobacter sp. SXCC-1] gi|329758291|gb|EGG74812.1| Ribonucleoside-diphosphate reductase large subunit [Gluconacetobacter sp. SXCC-1] Length = 599 Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 215/685 (31%), Positives = 313/685 (45%), Gaps = 101/685 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G L +RY L E Q F RVA ++ Y+ Sbjct: 1 MDHSRDALLTAFGKATLDNRYLLPG-----ESYQDLFGRVASYYGADAAHAQR----LYD 51 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 52 YISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 111 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G ++ G NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++ Sbjct: 112 GNLRSIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 170 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LR+ TG D R+ +++ +PD FM+ V + W L SP + + Sbjct: 171 LRRPTGGDPNRKALNLHHGVLVPDAFMRAVADDDEWALLSPKDNT--------------- 215 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580 V RK+SA ALW ++LT E G P+I F D N P+ H G+ V Sbjct: 216 ------------VIRKVSARALWIRILTARMEQGEPYIIFSDHVNNARPEHHKLAGLEVK 263 Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +SNLC EITL + E TAVC L S+NL ++ I + LDNV Sbjct: 264 TSNLCAEITLPTGMDQHGRERTAVCCLSSLNL-----ETWEEWKDNPQFIEDVMLFLDNV 318 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ID +E+A+ + R++GLG+MGF S L ++P+ S A + I Sbjct: 319 LQDFIDRAPDDMERARYAAMRERSVGLGVMGFHSFLQANNVPFESVVAKGWNRRIFKHIR 378 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A +AS +LA+ERG D GV Sbjct: 379 AQADAASRKLAEERGPCPDAA----DYGVME----------------------------- 405 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L Sbjct: 406 -------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLL 458 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +R + S + + GS+ +++ + K + TAFE+D W+IE A+ R ++ QA Sbjct: 459 TERGQNTSEVWSSITLNKGSVQHLDFLTRQEKDVFKTAFELDQRWVIEHAADRAPYVCQA 518 Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QS+N++L K+ L I+ AW G+K+ YY RS S + + DG+ Sbjct: 519 QSINIFLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSIQRADAVS----DGQEKRDLSH 574 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 P++ T EC CQ Sbjct: 575 REGEDAAGTAGPATTTDYEECLACQ 599 >gi|57239292|ref|YP_180428.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia ruminantium str. Welgevonden] gi|58579256|ref|YP_197468.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia ruminantium str. Welgevonden] gi|57161371|emb|CAH58294.1| putative ribonucleoside-diphosphate reductase alpha chain [Ehrlichia ruminantium str. Welgevonden] gi|58417882|emb|CAI27086.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia ruminantium str. Welgevonden] Length = 595 Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 211/644 (32%), Positives = 308/644 (47%), Gaps = 97/644 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + YERD G +L DRY L E Q F+R++ A + + A Y+ Sbjct: 6 VDYERDNNLTVFGKAVLSDRYLL-----ENEDYQQLFVRISEYYA----DNSEHAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G+ GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 117 GNLRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ + D FMK V +A W L SP + S Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQS--------------- 220 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580 V + A +W K+LT ETG P+I F D N P+ + + + Sbjct: 221 ------------VIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268 Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 SNLCTEITL + + TA+C L S+NL + Q+ ++L I +R LDNV Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYY---EQWKDNEL--FIEDVMRFLDNV 323 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 I+ + +E+AK S R+IG+G+MGF S L IP+ S A + I Sbjct: 324 LTDFIEKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATMWNKKIFSHIK 383 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 HA +AS +A E+G K D GV Sbjct: 384 KHADAASYRIAIEKGPCPDAK----DAGVME----------------------------- 410 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R N ++IAPTA+I+ I G S I+P N++ ++G F V N FL L Sbjct: 411 -------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLL 463 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + ++ + S + ++GS+ +++ + D K + TA+E+D W+IE +S R K+I QA Sbjct: 464 ILKGENNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQA 523 Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS+N++L K+ L I+ AW GLK+ YY RS+S +K Sbjct: 524 QSVNIFLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADK 567 >gi|296536500|ref|ZP_06898591.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC 49957] gi|296263179|gb|EFH09713.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC 49957] Length = 633 Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 224/714 (31%), Positives = 326/714 (45%), Gaps = 117/714 (16%) Query: 276 FDLVYLANDLKY----------ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 D V+LA+D++ RD G L DRY + E Q F RVA Sbjct: 2 LDAVHLADDIQLAGHGQVRVDRSRDALLTDFGKATLDDRYLMPG-----ESYQDLFARVA 56 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 ++ A Y+ +S FM +TP L N GT SCFL D L GI Sbjct: 57 SAY----SDDSAHAQRIYDYISRLWFMPATPVLSNGGTTRGLPISCFLNEANDSLNGIVD 112 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 EN LA GG+G+ W +R +G + G NGK+ G+IPF++V + +A++QG R+ Sbjct: 113 LWNENVWLASKGGGIGSYWGNLRSIGEKV-GQNGKTSGIIPFIRVMDSLTLAISQGSLRR 171 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 G+ YL H ++EEF+DLR+ TG D R+ +++ +PD FM+ V + W L SP Sbjct: 172 GSAAVYLPVSHPEIEEFIDLRRPTGGDPNRKALNLHHGILVPDAFMRAVEADEEWALTSP 231 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + V RK+SA LW ++L E G P+I + Sbjct: 232 KDGA---------------------------VVRKVSARGLWIRILMARIEQGEPYIIYS 264 Query: 565 DPCNIRSP--QQHVGV-VHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQF 616 D N P Q+ G+ V +SNLC+EITL + E TAVC L S+NL F Sbjct: 265 DAVNNARPEHQKLAGLEVKTSNLCSEITLPTGRDQHGKERTAVCCLSSLNL-----ETWF 319 Query: 617 DYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 ++ A I +R LDNV ID ++ +AK S R++GLG+MGF S L ++ Sbjct: 320 EWKDDARFIPDVMRFLDNVLQGFIDDAPDSMARAKYSAMRERSVGLGVMGFHSFLQAQNV 379 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S A + I A AS LA+ERG G + Sbjct: 380 PFESVIAKVWNKRMFKHIREQADLASRLLAEERGPCPDAA------------EYGFME-- 425 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYV 791 R SN MAIAPTA+I+ IC G S I+P N+Y Sbjct: 426 --------------------------RFSNKMAIAPTASISIICGGASPGIEPIAANVYN 459 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 +SG F V N +L L + D+ + + + GS+ +++ + + K + TAFE+ Sbjct: 460 HKTLSGSFIVRNPYLKKVLAKHGRDDDETWTTITVNKGSVSHLDFLDEQEKAVFKTAFEL 519 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRS----R 906 D W++E A+ R +I Q+QS+NL+L K+ L I+ QAW G+K+ YY RS R Sbjct: 520 DQRWVVEHAADRTPYICQSQSVNLFLPADVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQR 579 Query: 907 SATSVEKSTLKGVDG-----KLNAVPVTDPNSSTHSL-GIPSSCTSDTECEVCQ 954 + EK ++ G ++AV P ++ G + T EC CQ Sbjct: 580 ADAISEKVAVQPELGFAAATSIDAVLPVPPAPRVRAVAGEGGNGTDYEECLACQ 633 >gi|262277046|ref|ZP_06054839.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha proteobacterium HIMB114] gi|262224149|gb|EEY74608.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha proteobacterium HIMB114] Length = 646 Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 212/639 (33%), Positives = 300/639 (46%), Gaps = 97/639 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G+ L DRY S E Q F RVA A + A YN +S Sbjct: 60 RDANLTDFGMATLTDRYL-----SENESYQDLFARVAATYA----DDNLHAQRLYNYISK 110 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N+GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 111 LWFMPATPVLSNAGTSRGLPISCFLNEAADSLDGIVNLWSENVWLAAKGGGIGSYWGNLR 170 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G GK+ G+IPF+KV + +A++QG R+G+ YL H ++EEF+++R+ Sbjct: 171 AIGEKV-GRVGKTSGIIPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIEMRRP 229 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D RR +++ + D FM+ V +A W L SP + + Sbjct: 230 TGGDPNRRALNLHHGVLVTDAFMRAVETDADWPLKSPYDGT------------------- 270 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584 V I A LW ++LT ETG P+I + D N PQ H G+ V +SNL Sbjct: 271 --------VQSTIKARNLWIRLLTARVETGEPYIVYIDTVNRMIPQHHKLAGLTVKTSNL 322 Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635 C+EITL + + TAVC L S+NL N ++ I +R+LDNV Sbjct: 323 CSEITLPTGIDKYGKDRTAVCCLSSLNL-----ENYDEWKDEPGFIEDIMRMLDNVLSDF 377 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I+ + + AK S R++GLG+MGF S + IP S A + +FI Sbjct: 378 INRAPESFKDAKYSAMRERSVGLGVMGFHSYMQRHMIPIESVMAKVWNKKMFQFIDKEVN 437 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS +LA+ERG D + I+ Sbjct: 438 AASKKLAEERGPCP-------DAAEYGINE------------------------------ 460 Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 R SN AIAPTA+I+ IC G S I+P N Y +SG F V N +L L++ + Sbjct: 461 ---RFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKKILQKYN 517 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + S + + GS+ +++ + D K + TAFEID WLI+ ++ R +I QAQSLN Sbjct: 518 QDTNEVWSSITTNQGSVEHLDFLSQDEKDVFKTAFEIDQRWLIDHSADRTPYISQAQSLN 577 Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +++ KK L I+ QAW GLK+ YY RS+S E Sbjct: 578 VFIPADIHKKDLHQIHYQAWKKGLKSLYYCRSKSIQRAE 616 >gi|146304479|ref|YP_001191795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera sedula DSM 5348] gi|145702729|gb|ABP95871.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera sedula DSM 5348] Length = 823 Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 200/699 (28%), Positives = 347/699 (49%), Gaps = 69/699 (9%) Query: 289 RDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEK---EKRAVEFY 343 +D Y L++L RY L + IE PQ F RVA LA E +K + A +FY Sbjct: 109 KDLLISYNALKVLEARYLLKDPETLRYIETPQMMFKRVASYLAKVEQDKNVQQDAAQKFY 168 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLAKYSG 398 ++SS F+ +TP L NSGTR LS+CF+ V D + GI+ L+ A++ + G Sbjct: 169 EIMSSLKFVPNTPALMNSGTRLGILSACFVLPVRDSMTSPSGDGIYDTLRAMALVHQQGG 228 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G D++ +R G + T G + G + F+K+ + + V QGGKR+GA + WH D Sbjct: 229 GTGFDFSELRPKGDVVASTAGVASGPVSFMKIFDVSTDVVKQGGKRRGANMGVMHAWHAD 288 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------------- 504 +E+F+ + D + + N + + D FM+ V + L +P Sbjct: 289 IEDFIHAKTGELKD-VQLQNFNISVGVYDYFMEAVMKEEQVPLITPRKTKIPGTDHEYYI 347 Query: 505 -----------------DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 E+ + +Y E +I + E V R ++A L+ Sbjct: 348 VKARNYMREEWVQEEILRELEEKGSVYLDESKIITVDEALAIAEKEGAVIRWVNARTLFE 407 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 +++ +++G P + F D N R P ++G + ++N C E L CNLGS+N Sbjct: 408 QIVKGAWDSGDPGLLFIDEINRRHPTWYLGKIQATNPCGEEPLLPWES----CNLGSLN- 462 Query: 608 LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L F + D+D LA+TIR AVR LDNV+D N + + + +++ R +GLG+MG Sbjct: 463 LEKFVKERDGTPYIDWDDLANTIRYAVRFLDNVVDANRYPLPQIEQATKRTRKVGLGVMG 522 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK----GSLWDQ 718 AL L IPY S +AV ++ +FI +HA+ S+ELA+E+G++ ++ +W+ Sbjct: 523 LARALIKLGIPYDSVDAVYVSYYLAKFIYYHAMKTSIELAKEKGSFPAYDPVRYKDVWES 582 Query: 719 GVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 +D I ++ +R + + M+ +L LK G+RN+ +++APT TI Sbjct: 583 AR-ELDEILTISGIRGKPSDYAKKLMSEAEKLDVTVLKDMRLKYGLRNATVVSVAPTGTI 641 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G S SI+P + ++++ G F ++ + L++ +L ++ + G +G Sbjct: 642 SIIAGTSSSIEPLFALAFIRNVAVGKFMEIDPLFLEYLRKYELDTPDVVKKIA-ETGEVG 700 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 + +P ++K+ TA E++PM+ + + Q+W D ++++NL +EP+ ++ +Y Sbjct: 701 DNPFVPKTIRKLFRTAHEVEPMYHVLHQAAWQQWNDSGTSKTINLRSEEPA-DTVEKVYM 759 Query: 891 QAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 AW +G+K T Y +S+S + K + K A+P Sbjct: 760 TAWKLGIKGITVYRDKSKSQQVIYFGLKKEREEKSKALP 798 >gi|94495784|ref|ZP_01302363.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58] gi|94424476|gb|EAT09498.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58] Length = 626 Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 213/645 (33%), Positives = 313/645 (48%), Gaps = 101/645 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA ++ A Y+ +S Sbjct: 40 RDALLTEFGKETLNDRYLLPG-----ESYQDLFARVAAAY----SDDADHAQRVYDYISK 90 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI EN LA GG+G W VR Sbjct: 91 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWGNVR 150 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 151 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 209 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V A + L SP + Q Sbjct: 210 SGDFNRKALNLHHGVLLTDEFMEAVRDGADFNLRSPKD---------------------Q 248 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 + RG ++A AL++K++ + TG P+I F D N P+ H +G+ V +SNLC Sbjct: 249 SVRG------TVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRELGLKVSTSNLC 302 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL + D+ A I +R LDNV I Sbjct: 303 SEITLPTGRDHLGNDRTAVCCLSSMNL--ETWDEWKDHPTFAEDI---MRFLDNVLQDYI 357 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK S R++GLG+MGF S L +IP+ A + I+ Sbjct: 358 DRAPPEMARAKYSAMRERSVGLGVMGFHSFLQARNIPFEGAMAKSWNLRIFKQINAKVNE 417 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LAQERG DQGV Sbjct: 418 ASMLLAQERGPCPDAA----DQGV------------------------------------ 437 Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 M +C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L + Sbjct: 438 -MERFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKA 496 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 A+ + + GS+ +++ + + K + T+FEID WL+E A+ R +IDQAQSLN Sbjct: 497 KDSTAVWNSILERGGSVQHLDFLTQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLN 556 Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 L++ K L ++ +AW +G+K+ YYLRS+ SV+++ G Sbjct: 557 LFIPADVEKWDLLMLHFRAWELGIKSLYYLRSK---SVQRAGFAG 598 >gi|209966732|ref|YP_002299647.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum centenum SW] gi|209960198|gb|ACJ00835.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodospirillum centenum SW] Length = 621 Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 219/685 (31%), Positives = 306/685 (44%), Gaps = 112/685 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G L DRY L E Q F RVA A + A Y+ Sbjct: 34 VDHSRDNLLTAFGKATLDDRYLLPG-----ESYQDLFARVASYYA----DDTAHAQRLYD 84 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI G EN LA GG+G+ W Sbjct: 85 YISRLWFMPATPVLSNGGTDRGLPISCFLNEASDSLEGIVGLWNENVWLAAKGGGIGSYW 144 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++ Sbjct: 145 GNLRSIGERVKG-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAACYLPVWHPEIEEFVE 203 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ IPD FM+ V + W L SP + + L Sbjct: 204 MRRPTGGDPNRKALNLHHGVVIPDAFMRAVEADEDWKLVSPKDGATL------------- 250 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580 R +SA LW ++LT ETG P++ F D N P+ H G+ V Sbjct: 251 --------------RVVSARQLWIRILTARVETGEPYLLFIDHVNRAIPEHHKLAGLTVK 296 Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 SNLC EITL + + TAVC L S+NL ++ + I +R LDNV Sbjct: 297 MSNLCAEITLPTGLDPWGQQRTAVCCLSSLNL-----ETFLEWQDHPTFIEDTLRFLDNV 351 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 I + +AK + R++GLG+MGF S L +P A I Sbjct: 352 LTDFIAKAPDEMARAKYAAMRERSVGLGVMGFHSFLQGQGVPIEGVMAKVWNKRIFAHIK 411 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A +AS+ L ERG D R Sbjct: 412 RQADAASLALGAERGP------------------------CPDAAEYGGKERF------- 440 Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 SN +AIAPTA+I+ IC G S I+P N Y +SG ++V N +L L Sbjct: 441 ---------SNKIAIAPTASISIICGGASPGIEPIAANAYTHKTLSGSWSVRNKYLEAVL 491 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 ++ DE S + + GS+ +++ + D K + TAFEID WLIE A+ R +I Q+ Sbjct: 492 ERHGRNDEDTWSAITLNGGSVQHLDFLSQDEKDLFRTAFEIDQRWLIEHAADRTPFICQS 551 Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QSLN++L K+ L I+ QAW G+K+ YYLRS S E + K P T Sbjct: 552 QSLNVFLPADVHKRDLHQIHFQAWKKGVKSLYYLRSLSVQRAESESRPAAAAK----PDT 607 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 P + + EC CQ Sbjct: 608 PPEPAKYE-----------ECLACQ 621 >gi|260752514|ref|YP_003225407.1| ribonucleotide-diphosphate reductase subunit alpha [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551877|gb|ACV74823.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 613 Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 209/633 (33%), Positives = 306/633 (48%), Gaps = 96/633 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RVA A + E A Y+ +S Sbjct: 28 RDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDYISR 78 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SC+L VPD L GI EN LA GG+G W VR Sbjct: 79 LWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIIDIWNENVWLASRGGGIGTYWGNVR 138 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++RK Sbjct: 139 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 197 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V + L SP + S Sbjct: 198 SGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDGS-------------------- 237 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585 RGE + A +L++K++ +TG P+I F D N P+ H + V SSNLC Sbjct: 238 -KRGE------VDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSSNLC 290 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL+ +Q+ +K I +R LDNV I Sbjct: 291 SEITLPTGQDHLGNQRTAVCCLSSLNLVTW---DQWHDNK--RFIEDVMRFLDNVLQSYI 345 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + A+ + R++GLG+MGF S L IP+ A + I+ A Sbjct: 346 DNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANE 405 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LA+ERGA D GV Sbjct: 406 ASMMLAKERGACPDAA----DMGVME---------------------------------- 427 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S MAIAPTA+I+ I G S I+P N+Y +SG F V N +L L+ + Sbjct: 428 --RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSK 485 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +A+ + + +GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL Sbjct: 486 DSDAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNL 545 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ K L ++ +AW +G+K+ YYLRS+S Sbjct: 546 FIPADVEKWDLLMLHFRAWELGIKSLYYLRSKS 578 >gi|85375154|ref|YP_459216.1| ribonucleotide-diphosphate reductase subunit alpha [Erythrobacter litoralis HTCC2594] gi|84788237|gb|ABC64419.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter litoralis HTCC2594] Length = 681 Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 212/646 (32%), Positives = 318/646 (49%), Gaps = 103/646 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L G + Q F RVA A + ++ A Y+ +S Sbjct: 91 RDVNLTEFGKETLIDRYLLP--GEKF---QDLFARVADAYA----DDQEHAQRLYDYISR 141 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI G EN LA GG+G W VR Sbjct: 142 LWFMPATPVLSNGGTNRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTYWGNVR 201 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++RK Sbjct: 202 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDIHHPEIEEFLEIRKP 260 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ I D FM+ V + A + L SP + S Sbjct: 261 SGDFNRKALNLHHGVLITDAFMEAVREGAEFDLKSPKDGS-------------------- 300 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 V + A +L++K++ TG P+I F D N P+ H +G+ V +SNLC Sbjct: 301 -------VRGTVDARSLFQKLVETRLATGEPYIVFADTVNRMMPKHHRDLGLKVSTSNLC 353 Query: 586 TEITLNSS-----SEETAVCNLGSINLLAHFANNQFD-YDKLASTIRTAVRVLDNV---- 635 +EITL + ++ TAVC L S+NL ++D ++ I +R LDNV Sbjct: 354 SEITLPTGVDHLGNDRTAVCCLSSLNL------EKWDEWNGEKDFIEDVMRFLDNVLQDY 407 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID + +AK S R++G+G+MGF S L ++P P A D+ + I A Sbjct: 408 IDRAPDEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNDKMFKQIHAKAN 467 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS+ LA+ERG + + AM R S Sbjct: 468 EASMLLAKERGP---------------------CPDAEEMGAMERFS------------- 493 Query: 756 IGMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L LK++ Sbjct: 494 -------CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLKKK 546 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 A+ + + GS+ +++ + + K + T+FEID +L+E A+ R +IDQAQSL Sbjct: 547 SKDSTAVWNSILERGGSVAHLDFLTPEEKAVFKTSFEIDQRYLLEFAADRAPYIDQAQSL 606 Query: 874 NLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 NL++ K L ++ QAW G+K+ YYLRS+ SV+++ G Sbjct: 607 NLFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRAGFAG 649 >gi|83592780|ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum rubrum ATCC 11170] gi|83575694|gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] Length = 629 Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 219/663 (33%), Positives = 317/663 (47%), Gaps = 102/663 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L+ RD G +L DRY L G Q F RV+ A + A Y+ Sbjct: 44 LERSRDDKLNAFGKAMLGDRYLLPGEGI-----QDMFARVSCAFA----DNAAHAQRLYD 94 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT+ SCFL TVPD L GI EN LA GG+G W Sbjct: 95 AMSKLWFMPATPILSNGGTQRGLPISCFLNTVPDSLEGIVAIWNENVDLASNGGGIGTYW 154 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G NG + G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 155 GGVRSIGEAVKG-NGATSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 213 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ A I D FM+ V + + L SP Sbjct: 214 IRKASGDFNRKSLNLHHAINITDDFMEAVRDDRQFALKSPKS------------------ 255 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHS 581 GE V R + A LW+K+L +TG P++ F D N P Q+ +G+ V S Sbjct: 256 -------GE--VLRSVGARQLWQKILETRLQTGEPYLLFTDTVNRALPKHQRDLGLRVSS 306 Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635 SNLC EITL + E TAVC L S+N+ +++ I +R LDNV Sbjct: 307 SNLCAEITLPTGRDHRGQERTAVCCLSSLNI-----ETWDEWENAPGFIEDVLRFLDNVL 361 Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 I+ +E+A + R++GLG+MGF S L IP+ S A I Sbjct: 362 SHFIETAPDGMERAAYAAMRERSVGLGVMGFHSFLQARGIPFESALAKSWNLRLFRKIRR 421 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A +ASV+LA ERGA D ++ Sbjct: 422 DADAASVDLADERGACP-------------------------------------DAAERG 444 Query: 753 VKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +K R S +AIAPTA+I+ IC G S ++P N+Y +SG F+V N L L Sbjct: 445 MKA---RFSAKLAIAPTASISIICGGTSACVEPIPANVYTHKTLSGSFSVRNPHLARRLA 501 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + L + H+GS+ ++E + DD K + TAFEID W+I+ A+ R +I Q+Q Sbjct: 502 DKGLDTAETWQSIIEHEGSVQHLEGLSDDEKLVFRTAFEIDQRWIIDLAADRAPFICQSQ 561 Query: 872 SLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD---GKLNAVP 927 S+NLYL + K L ++ AW GLK+ YY RS+ SV+++ G + G+ ++ P Sbjct: 562 SINLYLPADADKWDLHMLHWTAWRRGLKSLYYCRSK---SVQRAAFVGREKPSGETSSAP 618 Query: 928 VTD 930 D Sbjct: 619 RAD 621 >gi|329847262|ref|ZP_08262290.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis biprosthecum C19] gi|328842325|gb|EGF91894.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis biprosthecum C19] Length = 589 Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 213/680 (31%), Positives = 321/680 (47%), Gaps = 111/680 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY + E Q F RVA A + + A Y+ +S Sbjct: 7 RDALLTDFGKTTLDDRYLMPG-----ESYQDMFARVATTYA----DDSEHAQRIYDYISR 57 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL VPD L GI G EN LA GG+G W VR Sbjct: 58 LWFMPATPVLSNGGASRGLPISCFLNAVPDSLEGIVGTWNENVALASNGGGIGTYWGRVR 117 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G G++ G+IPF++V + +A++QG R+G+ YL+ +H ++EEFL++RK Sbjct: 118 SIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVFHPEIEEFLEIRKP 176 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM+ V + L SP +N E Sbjct: 177 SGDFNRKSLNLHHGIGITDEFMEAVRDGTPFGLRSP------------------KNDE-- 216 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 V R I A LW+K+L + +TG P++ F D N P Q+ +G+ V SNLC Sbjct: 217 -------VVRYIDARNLWQKILEIRLQTGEPYLIFNDTINRSMPQHQRELGLKVTQSNLC 269 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--I 638 +EI L++ + TAVC L S+N A ++ I +R LDNV++ I Sbjct: 270 SEIMLHTGPDHRGQDRTAVCCLSSVN-----AETFMEWRDAPGFIEDVMRFLDNVLEDFI 324 Query: 639 NC--HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 C +++ A S R++GLGLMGF S L + + S A + + A Sbjct: 325 QCAPGSMDSAVYSALCERSVGLGLMGFHSFLQAQGVAFESAMAKSWNMRLFKHLRREADK 384 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS++L QERG P + ++R + Sbjct: 385 ASIKLGQERG--------------------------------------PCRDAEER--GV 404 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L L+ + + Sbjct: 405 MERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLETKGI 464 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + ++ H+GS+ +++ + +D K + TAFEID W++E A+ R I Q+QSLN+ Sbjct: 465 NTAEVWDNIVQHEGSVQHLDELSEDEKFVFKTAFEIDQRWVVELAADRTPEICQSQSLNI 524 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L K L ++ AW GLK+ YYLRS+ SV++++ G + K ++ P Sbjct: 525 FLPGDVDKWDLHMLHWTAWEQGLKSMYYLRSK---SVQRASHAGSETKEIVEKMSTPK-- 579 Query: 935 THSLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 580 ----------TDYEECLACQ 589 >gi|298674718|ref|YP_003726468.1| ribonucleoside-diphosphate reductase [Methanohalobium evestigatum Z-7303] gi|298287706|gb|ADI73672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanohalobium evestigatum Z-7303] Length = 695 Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 190/647 (29%), Positives = 305/647 (47%), Gaps = 91/647 (14%) Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR--------AV 340 D +++L RY L NG+ +E P F RVA ++ +KR Sbjct: 106 DLKLSVNAIRVLERRYLLKGENGNPVETPSEMFERVANSVS----SIDKRYGYNPYDSKA 161 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 EFY ++S+ F+ ++PTL N+GT QLS+CF+ V D + IF AL +++ K GG Sbjct: 162 EFYRMMSNLEFLPNSPTLMNAGTELGQLSACFVLPVEDSMKDIFEALTNMSLIHKSGGGT 221 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R G + T G + G + F+ + + + QGGKR+GA L H D+ Sbjct: 222 GFSFSKLRPNGDIVKSTKGVASGPVSFMSIFDQATEVIKQGGKRRGANMGILRIDHPDII 281 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF++ ++ G + N + + D FMK V ++ + L +P GK E Sbjct: 282 EFINSKEKEG----YLDNFNISVGVTDEFMKAVQSDSKYDLINPRT--------GKTTE- 328 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 K+ A ++ + TM + TG P + F D N R P HV + Sbjct: 329 ------------------KLRARDIFDLITTMAWRTGDPGMIFLDEINRRHPVSHVRTIE 370 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 S+N C E+ L CNLGSINL N+ +++KL + + + LDNVID N Sbjct: 371 STNPCGEVPLLPYES----CNLGSINLSKMVKNDTINWEKLKNNTHSGIHFLDNVIDANK 426 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + + + +R IGLG+MG L+IPY S EA+E A+ M+FI+ ++ SVE Sbjct: 427 YPLNEIDRETKNNRKIGLGVMGLAEMFAKLNIPYNSEEAIETAENIMKFINEESVKKSVE 486 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 L ++RG++ +FKGS W++ K MRN Sbjct: 487 LGEKRGSFPNFKGSQWEK-----------------------------------KYSSMRN 511 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 + IAPT TI+ I S I+P + +V++ M+ VN N K+R+ + + + Sbjct: 512 ATVNTIAPTGTISIIANTSSGIEPIFALSFVRNVMATQLLEVNPVFENVAKERNFYSKDL 571 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + D+ GSI N++++P D++ + T+ +IDP W + + QK++D + S + L P Sbjct: 572 MMDIS-KTGSIQNLKQVPKDVRDLFVTSLDIDPEWHVRMQAAFQKYVDNSVSKTVNL--P 628 Query: 881 SGKKLD---FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGK 922 LD IY A+ + K T Y S+ +E LK G+ Sbjct: 629 EKATLDDVKRIYMMAYKLNCKGITIYRYGSKENQVLELGGLKKEKGE 675 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 10/105 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 + KR+G FD KI++AI KA +V E G D+ + ++ Q + L K+ Sbjct: 4 IKKRDGRTVDFDSDKITQAIHKAIHSVNENDG--------DLARKMSYQVIDNLENRFKN 55 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 I +ED+QD VE L+++G+ ++ + Y+LYR +RS+VR + + Sbjct: 56 T-IPSVEDVQDIVEDVLIKNGYSEVAKSYILYRRKRSEVRETKKY 99 >gi|189184363|ref|YP_001938148.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia tsutsugamushi str. Ikeda] gi|189181134|dbj|BAG40914.1| ribonucleoside-diphosphate reductase alpha chain [Orientia tsutsugamushi str. Ikeda] Length = 604 Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 213/665 (32%), Positives = 317/665 (47%), Gaps = 98/665 (14%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L DRY L + E Q +R+A A + + A Y+ +S F+ +TP L N Sbjct: 27 LADRYLL-----KGETFQDLCVRIASYYA----DNKSHAQRLYDYMSQHWFLPATPILSN 77 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT SCF+ V D LYGI EN LA GG+G+ W VR + I G NG Sbjct: 78 GGTNRGLAISCFVNEVEDSLYGIVNTWIENVWLASRGGGIGSYWGNVRSINEKI-GENGY 136 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDM 479 S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R++T GD R++ ++ Sbjct: 137 SSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPISHPEIEEFIDIRRHTGGDSNRKSLNI 196 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 + I D FM V +N W L SP Y++ ++ Sbjct: 197 HHGIVISDQFMHAVEKNESWNLISP-----------------YDD----------RIINT 229 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLNSSSE- 595 + A LW K+LT ETG P+I F D N P+ H +G+ V +SNLC+EITL + + Sbjct: 230 VKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKLGLKVKTSNLCSEITLPTGRDY 289 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 TAVC L S+N L +F Q + + IR VL++ I+ T+ AK S Sbjct: 290 TNNIRTAVCCLSSLN-LEYFGLWQSNEHFIPDIIRFLDNVLEDFINKAPDTMSNAKYSAM 348 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R+IGLG+MGF S L +IP AS A + E I + SV LA+ERGA Sbjct: 349 HERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKERGA---- 404 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 D N R + A+APTA+ Sbjct: 405 --------------------CIDAQKCNIQERFSYK----------------TAVAPTAS 428 Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I S I+P N + + ++G F++ N L L+ + L ++ + S + H+GS Sbjct: 429 ISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQVWSSIATHEGS 488 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIY 889 + ++ + D K+++ TA+EID WLIE A+ R ++I Q+QSLN++L K+ L I+ Sbjct: 489 VQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQSQSLNIFLPGNCSKQLLHDIH 548 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 AW +K+ YY RS S EK + + V + + T + +S +D E Sbjct: 549 FDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTIDELAKLTDKEQLATS-NNDDE 599 Query: 950 CEVCQ 954 C CQ Sbjct: 600 CLACQ 604 >gi|148284014|ref|YP_001248104.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia tsutsugamushi str. Boryong] gi|146739453|emb|CAM79092.1| ribonucleoside-diphosphate reductase alpha chain [Orientia tsutsugamushi str. Boryong] Length = 605 Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 212/665 (31%), Positives = 316/665 (47%), Gaps = 97/665 (14%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L DRY L + E Q +R+A A + + A Y+ +S F+ +TP L N Sbjct: 27 LADRYLL-----KGETFQDLCVRIASYYA----DNKSHAQRLYDYMSQHWFLPATPILSN 77 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 GT SCF+ V D L+GI EN LA GG+G+ W VR + I G NG Sbjct: 78 GGTNRGLAISCFVNEVEDSLHGIVNTWIENVWLASRGGGIGSYWGNVRSINEKI-GENGY 136 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDM 479 S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R++T GD R++ ++ Sbjct: 137 SSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPVSHPEIEEFIDIRRHTGGDSNRKSLNI 196 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 + I D FM V +N W L SP Y+N ++ Sbjct: 197 HHGIVISDQFMHAVEKNESWNLISP-----------------YDN----------RIINT 229 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLNSSSE- 595 + A LW K+LT ETG P+I F D N P+ H +G+ V +SNLC+EITL + + Sbjct: 230 VKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKLGLKVKTSNLCSEITLPTGRDY 289 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 TAVC L S+N L +F Q + + I+ VL++ I+ +T+ AK S Sbjct: 290 TNNIRTAVCCLSSLN-LEYFELWQSNEHFIPDIIKFLDNVLEDFINKAPNTMSNAKYSAM 348 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R+IGLG+MGF S L +IP AS A + E I + SV LA+ERGA Sbjct: 349 HERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKERGA---- 404 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 D N R + AIAPTA+ Sbjct: 405 --------------------CIDAQKCNIQERFSYK----------------TAIAPTAS 428 Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I S I+P N + + ++G F++ N L L+ + L ++ + S + H+GS Sbjct: 429 ISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQVWSSIATHEGS 488 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIY 889 + ++ + D K+++ TA+EID WLIE A+ R ++I Q+QSLN++L K+ L I+ Sbjct: 489 VQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQSQSLNIFLPGNCSKQLLHDIH 548 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 AW +K+ YY RS S EK + + V D + ++ +D E Sbjct: 549 FDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTTIDELAKLTDKEQLATSNNDDE 600 Query: 950 CEVCQ 954 C CQ Sbjct: 601 CLACQ 605 >gi|326403281|ref|YP_004283362.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium multivorum AIU301] gi|325050142|dbj|BAJ80480.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium multivorum AIU301] Length = 628 Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 211/637 (33%), Positives = 303/637 (47%), Gaps = 103/637 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY + E Q F RVA + + A Y+ +S Sbjct: 30 RDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYDYISK 80 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W +R Sbjct: 81 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYWGNLR 140 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G NGK+ GV+PF++V + +A++QG R+G+ YL H +VEEF+++R+ Sbjct: 141 SIGEKV-GQNGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIEIRRP 199 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + + + Sbjct: 200 TGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKDGAHV----------------- 242 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584 R +SA +LW ++LT ETG P+I F D N P+ H G+ V +SNL Sbjct: 243 ----------RSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVKTSNL 292 Query: 585 CTEITLNS-----SSEETAVCNLGSINL---LAHFANNQFDYDKLASTIRTAVRVLDNV- 635 C EITL + + TAVC L SINL L N QF I +R LDNV Sbjct: 293 CAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQF--------IEDVMRFLDNVL 344 Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 ID ++ +AK + R++GLG+MGF S L L+IP+ S A I Sbjct: 345 QDFIDSAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRA 404 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A +AS +LA+ERG + GV Sbjct: 405 GADAASRKLAEERGPCPDAA----EYGVME------------------------------ 430 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 R S+ MAIAPTA+I+ I G S I+P N++++ +SG F+V N L L Sbjct: 431 ------RFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLA 484 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + DE S++ GS+ +++ + DD K + TAFE+D W+IE A+ R +I Q+Q Sbjct: 485 AKGRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQ 544 Query: 872 SLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 S+N++L K+ L I+ QAW G+K+ YY RS S Sbjct: 545 SINVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLS 581 >gi|148259751|ref|YP_001233878.1| ribonucleotide-diphosphate reductase subunit alpha [Acidiphilium cryptum JF-5] gi|146401432|gb|ABQ29959.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidiphilium cryptum JF-5] Length = 628 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 211/637 (33%), Positives = 303/637 (47%), Gaps = 103/637 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY + E Q F RVA + + A Y+ +S Sbjct: 30 RDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYDYISK 80 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W +R Sbjct: 81 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYWGNLR 140 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G NGK+ GV+PF++V + +A++QG R+G+ YL H +VEEF+++R+ Sbjct: 141 SIGEKV-GQNGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIEIRRP 199 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + + + Sbjct: 200 TGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKDGAHV----------------- 242 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584 R +SA +LW ++LT ETG P+I F D N P+ H G+ V +SNL Sbjct: 243 ----------RSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVKTSNL 292 Query: 585 CTEITLNS-----SSEETAVCNLGSINL---LAHFANNQFDYDKLASTIRTAVRVLDNV- 635 C EITL + + TAVC L SINL L N QF I +R LDNV Sbjct: 293 CAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQF--------IEDVMRFLDNVL 344 Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 ID ++ +AK + R++GLG+MGF S L L+IP+ S A I Sbjct: 345 QDFIDNAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRA 404 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A +AS +LA+ERG + GV Sbjct: 405 GADAASRKLAEERGPCPDAA----EYGVME------------------------------ 430 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 R S+ MAIAPTA+I+ I G S I+P N++++ +SG F+V N L L Sbjct: 431 ------RFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLA 484 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + DE S++ GS+ +++ + DD K + TAFE+D W+IE A+ R +I Q+Q Sbjct: 485 AKGRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQ 544 Query: 872 SLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 S+N++L K+ L I+ QAW G+K+ YY RS S Sbjct: 545 SINVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLS 581 >gi|283856394|ref|YP_162774.2| ribonucleoside-diphosphate reductase subunit alpha [Zymomonas mobilis subsp. mobilis ZM4] gi|283775393|gb|AAV89663.2| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 613 Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 207/633 (32%), Positives = 305/633 (48%), Gaps = 96/633 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RVA A + E A Y+ +S Sbjct: 28 RDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDYISR 78 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SC+L VPD L GI EN LA GG+G W VR Sbjct: 79 LWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWGNVR 138 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++RK Sbjct: 139 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 197 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V + L SP + + Sbjct: 198 SGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDGT-------------------- 237 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585 RGE + A +L++K++ +TG P+I F D N P+ H + V SSNLC Sbjct: 238 -KRGE------VDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSSNLC 290 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL+ +Q+ +K I +R LDNV I Sbjct: 291 SEITLPTGQDHLGNQRTAVCCLSSLNLVTW---DQWHDNK--RFIEDVMRFLDNVLQSYI 345 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + A+ + R++GLG+MGF S L IP+ A + I+ Sbjct: 346 DNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKVNE 405 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LA+ERGA D GV Sbjct: 406 ASMMLAKERGACPDAA----DMGVME---------------------------------- 427 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S MAIAPTA+I+ I G S I+P N+Y +SG F V N +L L+ + Sbjct: 428 --RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSK 485 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +A+ + + +GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL Sbjct: 486 DSDAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNL 545 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ K L ++ +AW +G+K+ YYLRS+S Sbjct: 546 FIPADVEKWDLLMLHFRAWELGIKSLYYLRSKS 578 >gi|241761976|ref|ZP_04760061.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373656|gb|EER63228.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 613 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 207/633 (32%), Positives = 305/633 (48%), Gaps = 96/633 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RVA A + E A Y+ +S Sbjct: 28 RDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDYISR 78 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SC+L VPD L GI EN LA GG+G W VR Sbjct: 79 LWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWGNVR 138 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++RK Sbjct: 139 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 197 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V + L SP + + Sbjct: 198 SGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDGT-------------------- 237 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585 RGE + A +L++K++ +TG P+I F D N P+ H + V SSNLC Sbjct: 238 -KRGE------VDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSSNLC 290 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL+ +Q+ +K I +R LDNV I Sbjct: 291 SEITLPTGQDHLGNQRTAVCCLSSLNLVTW---DQWHDNK--RFIEDVMRFLDNVLQSYI 345 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + A+ + R++GLG+MGF S L IP+ A + I+ A Sbjct: 346 DNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANE 405 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LA+ERGA D GV Sbjct: 406 ASMMLAKERGACPDAA----DMGVME---------------------------------- 427 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S MAIAPTA+I+ I G S I+P N+Y +SG F V N +L L+ + Sbjct: 428 --RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSK 485 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + + + + +GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL Sbjct: 486 DSDTVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNL 545 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ K L ++ +AW +G+K+ YYLRS+S Sbjct: 546 FIPADVEKWDLLMLHFRAWELGIKSLYYLRSKS 578 >gi|88606797|ref|YP_504939.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma phagocytophilum HZ] gi|88597860|gb|ABD43330.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaplasma phagocytophilum HZ] Length = 603 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 207/663 (31%), Positives = 313/663 (47%), Gaps = 108/663 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y RD G +L DRY L E Q F+RVA ++ + A Y+ Sbjct: 13 IDYTRDDNLTNFGKAVLSDRYLLEK-----EDYQQLFVRVAQ----YYSDDSQHAQRLYD 63 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 64 YMSKLWFMPATPILSNGGTSRGLPISCFLNETEDSLAGILNLWNENVWLASRGGGIGSYW 123 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G+ GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 124 GNLRSIGERVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 182 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 183 IRRPTGGDPNRKALNIHHGVLLSDEFMEAVEHDKTWDLLSPKDKC--------------- 227 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VH 580 V + A LW K+LT ETG P+I F D N P+ + +G+ V Sbjct: 228 ------------VISTVKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVK 275 Query: 581 SSNLCTEITLNSSSE-----ETAVCNLGSINLLAH---FANNQFDYDKLASTIRTAVRVL 632 SNLCTEITL + + TAVC L S+NL + N QF I +R L Sbjct: 276 MSNLCTEITLTTGEDHLKKSRTAVCCLSSLNLEYYDMWCGNPQF--------IEDVMRFL 327 Query: 633 DNVIDINCHT----IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV+ +E+A+ S R+IG+G+MGF S L +P+ S A + Sbjct: 328 DNVLTDFVQKAPTELERARYSAMRERSIGIGVMGFHSFLQSKMVPFESFAATMWNKKIFS 387 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 ++ A + S +LA E+GA + +D M R Sbjct: 388 YLKSQADAVSRKLALEKGA---------------------CPDAQDANEMERF------- 419 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 + +++APTA+I+ I G S I+P N++ ++G F V N FL Sbjct: 420 ------------VHKLSVAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQ 467 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 LK + D+ + S + ++GS+ +++ + D K + TA+E+D W+IE + R +I Sbjct: 468 ELLKSKGKDDDQVWSSISTNEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYI 527 Query: 868 DQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QAQS+N++L P+G + L ++ AW GLK+ YY+RS+S +K + + V+G Sbjct: 528 CQAQSVNIFL--PAGVHKRYLHKVHFLAWKKGLKSLYYMRSKSVQRADKVSHE-VNGAAA 584 Query: 925 AVP 927 VP Sbjct: 585 VVP 587 >gi|284175618|ref|ZP_06389587.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus 98/2] gi|261602517|gb|ACX92120.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus solfataricus 98/2] Length = 838 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 233/826 (28%), Positives = 391/826 (47%), Gaps = 118/826 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +LE I+ + S +V+ IV ++ N+ D ++ + ++ Sbjct: 12 KIKVIKRDGKVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRVIADIV 67 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 R LIE Y FL+E +R VL +Y +H Sbjct: 68 --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321 DFD E+D Y L++L RY L N R IE PQ F Sbjct: 100 ------KGKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143 Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 RVA LA E +E E + +E FY ++S F+ ++PTL NS TR LS+CF+ Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSACFVI 203 Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+K Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 V + + + QGGKR+GA + WH D+E+F+ R TG + + + N + D Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDL---HDLY--------GKEF--EIAYENYERQA-----D 530 FM V + L +P + H+ Y +E+ E+ E + D Sbjct: 322 FMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVSLD 381 Query: 531 RGEI--------------KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 +I V + ++A +L+ +++ +++G P + F D N R P ++ Sbjct: 382 ESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSINL + D+D LA IR VR L Sbjct: 442 GKINATNPCGEEPLLPWES----CNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVRFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI + Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557 Query: 693 HAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MNRTSR 743 HA AS+E+A+E+G + ++ L+ + DS+ AE+ D+ + + + Sbjct: 558 HAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVVDK 617 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F ++ Sbjct: 618 LDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 678 PLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQAAW 736 Query: 864 QKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 Q+W D ++++NL +EP + ++ +Y AW +G+K R +S Sbjct: 737 QQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781 >gi|15897814|ref|NP_342419.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2] gi|13814111|gb|AAK41209.1| Ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2] Length = 841 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 233/826 (28%), Positives = 391/826 (47%), Gaps = 118/826 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +LE I+ + S +V+ IV ++ N+ D ++ + ++ Sbjct: 15 KIKVIKRDGKVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRVIADIV 70 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 R LIE Y FL+E +R VL +Y +H Sbjct: 71 --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 102 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321 DFD E+D Y L++L RY L N R IE PQ F Sbjct: 103 ------KGKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 146 Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 RVA LA E +E E + +E FY ++S F+ ++PTL NS TR LS+CF+ Sbjct: 147 RRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSACFVI 206 Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+K Sbjct: 207 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 266 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 V + + + QGGKR+GA + WH D+E+F+ R TG + + + N + D Sbjct: 267 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 324 Query: 489 FMKRVTQNAGWTLFSPDEVSDL---HDLY--------GKEF--EIAYENYERQA-----D 530 FM V + L +P + H+ Y +E+ E+ E + D Sbjct: 325 FMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVSLD 384 Query: 531 RGEI--------------KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 +I V + ++A +L+ +++ +++G P + F D N R P ++ Sbjct: 385 ESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 444 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSINL + D+D LA IR VR L Sbjct: 445 GKINATNPCGEEPLLPWES----CNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVRFL 500 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI + Sbjct: 501 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 560 Query: 693 HAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MNRTSR 743 HA AS+E+A+E+G + ++ L+ + DS+ AE+ D+ + + + Sbjct: 561 HAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVVDK 620 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F ++ Sbjct: 621 LDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 680 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 681 PLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQAAW 739 Query: 864 QKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 Q+W D ++++NL +EP + ++ +Y AW +G+K R +S Sbjct: 740 QQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 784 >gi|157964543|ref|YP_001499367.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia massiliae MTU5] gi|157844319|gb|ABV84820.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia massiliae MTU5] Length = 617 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 34 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 84 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 85 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 144 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 145 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 203 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 204 KALNIHHGIAITDKFMKAVENNTDFDLVSP---------------------------ATK 236 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 237 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 296 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 297 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 355 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS A AS+E+ +E+G Sbjct: 356 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 415 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 416 A------------------------CPDALDAGSNERF----------------SNKTAI 435 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 436 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 495 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 496 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 555 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 556 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 584 >gi|296127718|ref|YP_003634970.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira murdochii DSM 12563] gi|296019534|gb|ADG72771.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira murdochii DSM 12563] Length = 771 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 230/809 (28%), Positives = 380/809 (46%), Gaps = 114/809 (14%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I+ DG FN ++L + A G++ +++++ K + D + L LI ++ Sbjct: 12 IIKRDGREEPFNEEKLRKVTNWATGGIEAFTNQLLEGLNIK-INDKMKIEVLYDELINTA 70 Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +I P Y + + L K+ +E T KK H + ++++G+K Sbjct: 71 VNMISPLYPVYDTIAEKLYLMKIYKE--TCGLKKIGSYPHIK----------NFLKKGIK 118 Query: 266 ARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ + ++ D +L + + + RD F Y GL I Y +Y +I ++E+PQ + Sbjct: 119 YKIYDKDIVKLFSDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITY 178 Query: 322 MRVAM--------------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 M AM L + + E+ K + Y++LS +TP + NS T Q Sbjct: 179 MTAAMFSFYNDYYKGENKDKLEISKAERLKYIKKTYDMLSRHEVTFATPRIANSMTIKAQ 238 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L+SC L T DD + + A+ +K+SGG+ D + +R G+ I G+S G IPF Sbjct: 239 LASCILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPF 298 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K T + NQGG RKGA WH+DV + + L+ G + R + + I + Sbjct: 299 IKRVEQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISN 358 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 +F +RV ++ TLF P E L++ YG++F +AY YE ++ + +KI A L Sbjct: 359 IFRERVNKDGYVTLFDPKETPLLNEEYGEKFNVAYMYYESKSSIRK----KKIKAKDLLF 414 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------- 592 ++L + ETG+ ++TF D NI V +SNLC EI + S Sbjct: 415 QILKVRQETGNLYLTFVD--NINEQNMVNKFVGASNLCQEIVIPSYPSKLIDEKYVINEE 472 Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 S E +CNL SINL++ FD +K S T +R DN+ID + + Sbjct: 473 GEYEIIQRKKSGEIGICNLVSINLMSWV---NFDEEKKKSFCYTLLRGCDNIIDTQFYPV 529 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ + +N +R IG+G++ + + L + Y EA+E ++ + + +H AS LA+ Sbjct: 530 KEGEIANKKNRPIGIGVINYANLLASNKLKYTDREALEFTNKVFDDLYYHIYQASNLLAK 589 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 ERG Y +F S W G+ P I LL + D+L ++ + WD+L + +KT G+R S Sbjct: 590 ERGPYKTFNESKWKDGLTPF-HISLLNK-SDKLNVS-LDKEKWDKLAEEIKTSGVRFSFH 646 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAPTAT ++SI+P +V+ + V E Sbjct: 647 GAIAPTATSGKSVSATESIEP----------------IVDLYFVEE-------------- 676 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMW------LIESASRRQKWIDQAQSLNLYL 877 I+ +P + I + W +IE A+ RQ++IDQ+QSLNLY Sbjct: 677 ---------GIQTLPSLVPNIKNNRAYYERCWAIPAKTIIELAAVRQRYIDQSQSLNLYY 727 Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905 +P S K+L + A +GLKT YY+++ Sbjct: 728 VKPDSAKELWDDIQYAMDLGLKTLYYMKT 756 >gi|322511018|gb|ADX06331.1| putative ribonucleotide reductase large subunit A [Organic Lake phycodnavirus 2] Length = 831 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/323 (44%), Positives = 202/323 (62%), Gaps = 10/323 (3%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 YER+F +Y G + L Y + N +E Q +MRV++ + + +K K E Y+ L Sbjct: 127 YERNFLIDYFGYKTLERSYLMRNNNKVVENIQHLWMRVSIEIHGENLDKVK---ETYDGL 183 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405 S F+ +TPTL+NSGTR PQLSSC+L + DD + GIF L E A ++K++GG+G Sbjct: 184 SKKLFIHATPTLYNSGTRRPQLSSCYLLGMEDDSIDGIFNTLHECASISKWAGGIGLHIH 243 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464 VR G HI GTNGKS G++P L+V N+TA V+QGG KR G+ YLE WH D+EEFL+ Sbjct: 244 NVRSKGTHISGTNGKSNGIVPMLRVFNNTARYVDQGGGKRNGSFAIYLEPWHGDIEEFLE 303 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 LRKN G++ R D+ A W+PDLFM ++ ++ W L P++ L +LYG+ FE Y Sbjct: 304 LRKNHGEEEMRARDLFYALWVPDLFMNKIEKDDDWYLMCPNQCEGLSELYGESFEALYNQ 363 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y + K +K+ A LW K+L ETG P++ +KD CN +S Q+++G + SSNL Sbjct: 364 YVSEG-----KYLKKMKARELWFKILDSQMETGTPYMLYKDACNKKSNQKNLGTIRSSNL 418 Query: 585 CTEITLNSSSEETAVCNLGSINL 607 C EI S EE+AVCNL SI+L Sbjct: 419 CCEIIEYSDKEESAVCNLASISL 441 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 168/303 (55%), Gaps = 12/303 (3%) Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FDY L + L+N+ID+N + EK + SN HR IG+G+ G ++++ + Sbjct: 525 FDYKGLHKITKIVTENLNNIIDVNYYPTEKTRLSNKKHRPIGIGVQGLADTFAMMNVAFD 584 Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S +A +I + E + ++ S+ELA+E+ G Y SF GS QG+F D + Sbjct: 585 SNDAKQINKDIFETMYHASMEKSMELAKEKQGPYDSFDGSPLSQGIFQFDLWNVTP---- 640 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 +++ WD+L+ + G NS C+A PTA+ + I ++ +P N+Y + Sbjct: 641 ------SNKYNWDKLRNNIMEFGTYNSLCLAPMPTASTSQILSNNECFEPFTSNMYTRRT 694 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 ++G+F V+N L+ EL ++W+ ++ +++ H GSI I+ IPD +K+ + +E+ Sbjct: 695 LAGEFMVINKHLMKELIDLNIWNSSIKNEIVKHKGSIQTIKEIPDYIKQKYKIVWEMSMK 754 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I+ A R +I Q+QS+NL++++P+ K L ++ AW GLKT YYLR ++ ++ Sbjct: 755 SIIDMAKDRGAYICQSQSMNLWVEDPNYKILTNMHLYAWKSGLKTGMYYLRRKAKHQAQQ 814 Query: 914 STL 916 T+ Sbjct: 815 FTV 817 >gi|91763117|ref|ZP_01265081.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717530|gb|EAS84181.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 645 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 215/682 (31%), Positives = 313/682 (45%), Gaps = 107/682 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY H E Q F RVA A + A YN +S+ Sbjct: 55 RDSKLTDFGRATLKDRYLGHN-----ESYQDLFARVASSYA----DDNLHAQRIYNYISN 105 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W +R Sbjct: 106 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYWGNLR 165 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G I G GK+ G+IPF+KV + +A++QG R+G+ YL H ++EEF+++R+ Sbjct: 166 SIGEKI-GKVGKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIEMRRP 224 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + + Sbjct: 225 TGGDPNRKALNLHHGVLVSDAFMRAVETDGQWALKSPADGT------------------- 265 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNL 584 V + ISA LW ++LT ETG P+I + D N + PQ H V +SNL Sbjct: 266 --------VQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVKTSNL 317 Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635 C+EITL + + TAVC L S+NL + +++ D + I +R LDNV Sbjct: 318 CSEITLPTGIDKNGRDRTAVCCLSSLNLEKY---DEWKDDNV--MINDVMRFLDNVLTDF 372 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I+ + AK S R++GLG+MGF S L IP S + + + I H Sbjct: 373 IERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVD 432 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA ERGA +++ Sbjct: 433 QASKDLADERGACPDAADYGYNE------------------------------------- 455 Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 R SN AIAPTA+I+ IC G S ++P N Y +SG F V N +LV L++ Sbjct: 456 ---RFSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHG 512 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + + S + + GS+ +++ + D K + TAFE+D W+IE + R +I QAQS+N Sbjct: 513 KNTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSIN 572 Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 L++ K+ L I+ AW GLK+ YY RS+S E +N TD N+ Sbjct: 573 LFVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE---------NVNDTKATDVNA 623 Query: 934 STHSLGIPSSCTSD-TECEVCQ 954 + + ++ + EC CQ Sbjct: 624 NVYKSKPQTTEQPEYEECLSCQ 645 >gi|163784573|ref|ZP_02179422.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159880159|gb|EDP73814.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 592 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 143/332 (43%), Positives = 201/332 (60%), Gaps = 5/332 (1%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 F +E GVK L E +++FDL + N + YERD +Y G+ L DRYF NG I Sbjct: 101 FKEALEYGVKEGLYKEDILNFDLEKIENAIDYERDNLLDYFGMTTLKDRYFTKDRNGEII 160 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FFMRVA+G+ E E ++ YN +S ++ STPTL+NSGT Q SSC++ Sbjct: 161 EKPQWFFMRVALGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVN 216 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D L I +E A LAKY+GG+G D T +R G+ I N KS GVIPF+K+ + Sbjct: 217 VIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSAIKSLNAKSSGVIPFIKIFDTI 276 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 A+ QGG+R+ + YL+ WH+D++ FLDLR+ TG+ RT +NTA W+PD M+R+ Sbjct: 277 VNAIQQGGRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAIWMPDEIMRRIK 336 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + LF P E +L +GK+F Y +A+ GEIK+++KI + +R+ L L Sbjct: 337 EGEPLYLFDPAECPELVASWGKDFTEKYFECIEKAETGEIKLWKKIDSQEWFRRYLFKLA 396 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +TGHPW+TFKD N +P GV++SSNLC Sbjct: 397 KTGHPWLTFKDRHNEHNPCPEYGVINSSNLCV 428 >gi|190571531|ref|YP_001975889.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018934|ref|ZP_03334742.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357803|emb|CAQ55259.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995885|gb|EEB56525.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 594 Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 206/651 (31%), Positives = 317/651 (48%), Gaps = 103/651 (15%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 Y+A + Y +D G +L DRY + E Q F+R+A ++ ++ A Sbjct: 3 YIA--INYAKDSKLTDFGKAVLLDRYLI-----ENESYQDLFIRIANYY----SDNKEHA 51 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 Y+ +S+ FM STP L N GT+ SCFL D L GI EN LA GG Sbjct: 52 QRLYDYMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGG 111 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G+ W +R +G + G+ GK+ G++PF+ V N +A++QG R+G+ YL WH ++ Sbjct: 112 IGSYWGNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEI 170 Query: 460 EEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 EEFLDLRK TG D R+ +++ A + D FM+ V + W L SP Sbjct: 171 EEFLDLRKPTGGDPNRKALNIHHAVIVTDKFMQAVEDDQEWDLISP-------------- 216 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 + N KV + A +W K+LT ETG P+I F D N P+ + + Sbjct: 217 ---HNN----------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKL 263 Query: 579 ---VHSSNLCTEITLNSSSE-----ETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628 + SNLC+EITL + + TAVC L S+NL + +N+ I Sbjct: 264 NLDIKMSNLCSEITLTTGYDHLKKSRTAVCCLSSVNLEYYEEWKDNEL-------FIEDI 316 Query: 629 VRVLDNVID--IN--CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +R LDNV++ IN + I++AK S R+IGLG+MGF S L +P+ S A + Sbjct: 317 MRFLDNVLEDFINQAPNEIQRAKYSAIRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNK 376 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + + + A S +LA+E+G K I L+ Sbjct: 377 KVFKHLREQADVVSKKLAEEKGPCLDAK------------EIDLME-------------- 410 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803 R ++ +AIAPTA+I+ I G S I+P N++++ ++G F V N Sbjct: 411 --------------RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRN 456 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 FL L +++ ++ + S + ++GS+ +++ + K TA+E+D W+IE AS R Sbjct: 457 KFLQKLLAEKNQDNDEIWSSISTNEGSVQHLDFLSKHEKLTFKTAYELDQQWIIEHASDR 516 Query: 864 QKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 +I Q+QS+NL+L K+ L I+ AW GLK+ YY RS+S +K Sbjct: 517 TPYICQSQSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 567 >gi|332797062|ref|YP_004458562.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidianus hospitalis W1] gi|332694797|gb|AEE94264.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidianus hospitalis W1] Length = 841 Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 202/683 (29%), Positives = 355/683 (51%), Gaps = 70/683 (10%) Query: 289 RDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE-----TEKEKRAVE 341 +D Y L++L RY L N R IE PQ F RVA LA E +E E +A+E Sbjct: 113 KDLLLTYNALKVLEARYLLKDPNTLRYIETPQMMFRRVAKYLASVELKYGKSESEVKALE 172 Query: 342 --FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLA 394 FY+++S+ F+ +TPTL NSGTR LS+CF+ V D + GI+ AL+ A++ Sbjct: 173 EKFYDIMSNLRFLPNTPTLMNSGTRLGILSACFVIPVRDSMTTPEGDGIYDALRAMALVH 232 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG G D++ +R G + T G + G + F+K+ + + V QGGKR+GA + Sbjct: 233 QQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMKIFDVSTDVVKQGGKRRGANMGVMHV 292 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV---SDLH 511 WH ++E+F++ + D + + N + + D FM++V + L +P + H Sbjct: 293 WHAEIEDFINSKSGKLKD-VQLQNFNISVGVYDYFMEKVERGEEVPLITPRKTRIPGTDH 351 Query: 512 DLY--------GKEF---EIAYENYERQA----DRGEI--------------KVFRKISA 542 D Y +E+ EI E E+ D +I + R I+A Sbjct: 352 DYYINKARNYMSEEWVQEEILNELEEKGGAVWLDESKIITVDEALVIAEKEGAIIRWINA 411 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 +L+ +++ +++G P + F D N R P ++G ++++N C E L CNL Sbjct: 412 RSLFNEIVRSAWDSGDPGLLFIDEINRRHPVWYLGKINATNPCGEEPLLPWES----CNL 467 Query: 603 GSINL---LAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 GSINL + N ++ D+D LA TI+ AVR+LDNVID N + +++ +++ + R +GL Sbjct: 468 GSINLEKFVKETENGKYIDWDGLAETIKYAVRLLDNVIDANKYPLKQIEQATKSTRKVGL 527 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----S 714 G+MG L L IPY S +A+ ++ + +FI +HA S+ELA+E+G++ + Sbjct: 528 GVMGLARMLIKLGIPYDSVDAIYLSYQVAKFIYYHAFKTSIELAKEKGSFPVYDPLRYHD 587 Query: 715 LWDQGVFPIDSIGLLAEVR---DELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAP 768 +W+ P + + + +V E T+ ++ + ELK G+RN+ +++AP Sbjct: 588 IWESAR-PFEYLLEVTKVEGKPSEYVRKLTAIVDKIDFSELKAERIKHGLRNATVVSVAP 646 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T TI+ I G S SI+P + ++++ G F ++S + L++ +L + ++ + Sbjct: 647 TGTISIIAGTSSSIEPLFALAFIRNVAVGKFMEIDSLFLEYLRKYELDNPEVVKKVA-ET 705 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLD 886 G++G +P ++K+ TA E+ P + + + Q+W D ++++NL +EP + ++ Sbjct: 706 GTVGENMFMPATIRKLFRTAHEVPPEYHLLHQAAWQQWNDSGTSKTINLRSEEPP-ETVE 764 Query: 887 FIYRQAWLMGLKTTYYLRSRSAT 909 +Y AW +G+K R +S + Sbjct: 765 RVYLMAWKLGVKGITVYRDKSKS 787 >gi|42520094|ref|NP_966009.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696744|ref|ZP_00372286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila simulans] gi|58698281|ref|ZP_00373199.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila ananassae] gi|99036013|ref|ZP_01315053.1| hypothetical protein Wendoof_01000107 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630021|ref|YP_002726812.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp. wRi] gi|42409831|gb|AAS13943.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535205|gb|EAL59286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila ananassae] gi|58537070|gb|EAL60196.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila simulans] gi|225592002|gb|ACN95021.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp. wRi] Length = 594 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 204/644 (31%), Positives = 318/644 (49%), Gaps = 97/644 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y +D G +L DRY + E Q F R+A ++ ++ A Y+ Sbjct: 6 INYAKDSKLTDFGKAVLSDRYLI-----ENESYQDLFARIANYY----SDNKEHAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM STP L N GT+ SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G+ GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 117 GNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ A + D FM+ V + W L SP + Sbjct: 176 LRKPTGGDPNRKALNIHHAVIVTDKFMQAVENDQEWNLISP-----------------HN 218 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580 N KV + A +W K+LT ETG P+I F D N P+ + + + Sbjct: 219 N----------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIK 268 Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 SNLC+EITL + + TAVC L S+NL + ++ +KL I +R LDNV Sbjct: 269 MSNLCSEITLTTGYDHLNKSRTAVCCLSSVNLEYY---EEWKDNKL--FIEDIMRFLDNV 323 Query: 636 ID--IN--CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ++ IN + +++AK S R+IGLG+MGF S L +P+ S A + + +++ Sbjct: 324 LEDFINKAPNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLR 383 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A S +LA+E+GA S K + L+ Sbjct: 384 EQADIVSKKLAEEKGACSDAK------------EVDLME--------------------- 410 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R ++ +AIAPTA+I+ I G S I+P N++++ ++G F V N FL L Sbjct: 411 -------RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLL 463 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +++ ++ + S + ++GS+ +++ + + K TA+E+D W+IE AS R +I Q+ Sbjct: 464 AEKNQDNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASDRTSYICQS 523 Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS+NL+L K+ L I+ AW GLK+ YY RS+S +K Sbjct: 524 QSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 567 >gi|67459101|ref|YP_246725.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia felis URRWXCal2] gi|67004634|gb|AAY61560.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia felis URRWXCal2] Length = 607 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLISP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS A AS+E+ +E+G Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 574 >gi|103487258|ref|YP_616819.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingopyxis alaskensis RB2256] gi|98977335|gb|ABF53486.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis RB2256] Length = 676 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 212/649 (32%), Positives = 314/649 (48%), Gaps = 109/649 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA A + + A Y+ +S Sbjct: 91 RDALLTDFGKETLQDRYLLPG-----ESYQDLFARVADAYA----DDQDHAQRLYDYISK 141 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI G EN LA GG+G W VR Sbjct: 142 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVGTWNENVWLASRGGGIGTYWGAVR 201 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 202 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKP 260 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ I D FM+ V + L SP + S Sbjct: 261 SGDFNRKALNLHHGVLITDEFMEAVRDGTEFNLRSPKDNS-------------------- 300 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 V + A +L++K++ TG P+I F D N P+ H +G+ V +SNLC Sbjct: 301 -------VRGTVDARSLFQKLVETRLATGEPYIIFIDQVNRMMPKHHRDLGLKVTTSNLC 353 Query: 586 TEITLNSS-----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL ++++ DK I +R+LDNV I Sbjct: 354 SEITLPTGRDHLGNDRTAVCCLSSLNLETW---DEWNGDK--RFIEDVMRMLDNVLQDYI 408 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK S R++GLG+MGF S L +P+ A + I Sbjct: 409 DRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSSNLRIFKHIRAQVDQ 468 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LA+ERG DQGV Sbjct: 469 ASMLLAKERGPCPDAA----DQGV------------------------------------ 488 Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVN----SFLVNEL 810 M +C MAIAPTA+I+ IC G S I+P N+Y +SG F++ N + LV++ Sbjct: 489 -MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIRNPHLEALLVDKA 547 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K D A+ + + GS+ +++ + D K + T+FEID WL+E A+ R +IDQA Sbjct: 548 KNSD----AVWNSILERGGSVQHLDFLTQDEKDVFKTSFEIDQRWLLELAADRTPYIDQA 603 Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 SLNL++ K L ++ +AW +G+K+ YYLRS+ SV+++ G Sbjct: 604 ASLNLFIPADVEKWDLLMLHYRAWELGIKSLYYLRSK---SVQRAGFAG 649 >gi|296282220|ref|ZP_06860218.1| ribonucleotide-diphosphate reductase subunit alpha [Citromicrobium bathyomarinum JL354] Length = 690 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 206/634 (32%), Positives = 307/634 (48%), Gaps = 98/634 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA A + + A Y+ +S+ Sbjct: 100 RDANLTEFGKETLEDRYLLPG-----ESYQDLFARVADAYA----DDQAHAQRLYDYISN 150 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI EN LA GG+G W VR Sbjct: 151 LWFMPATPVLSNGGTNRGLPISCYLNSVEDSLNGIVDTWNENVWLASKGGGIGTYWGNVR 210 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++RK Sbjct: 211 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM++V + L SP + S Sbjct: 270 SGDFNRKALNLHHGVLVTDEFMEKVRAGEEFDLVSPRDGS-------------------- 309 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 V + + A +L++K++ TG P+I F D N P+ H +G+ V +SNLC Sbjct: 310 -------VRKTVDARSLFQKLVETRLATGEPYIVFSDTVNSMMPKHHRDLGLKVSTSNLC 362 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL ++++ DK I +R LDNV I Sbjct: 363 SEITLPTGRDHLGNDRTAVCCLSSLNLEKW---DEWNSDK--QFIEDVMRFLDNVLQDYI 417 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK S R++G+G+MGF S L ++P P A + + IS A Sbjct: 418 DRAPPEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNIKMFQHISTAANE 477 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ LA ERG + + AM R S Sbjct: 478 ASMMLAHERGP---------------------CPDAEEMGAMERFS-------------- 502 Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ Sbjct: 503 ------CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLQELLAKKS 556 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + + + GS+ +++ + + K I+ T+FEID WL+E A+ R IDQAQSLN Sbjct: 557 KDSTNVWNSILERGGSVAHLDFLTPEEKAIYKTSFEIDQRWLLEFAADRSPMIDQAQSLN 616 Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907 L++ K L ++ AW +K+ YYLRS+S Sbjct: 617 LFIPADVDKWDLMMLHFHAWEKKIKSLYYLRSKS 650 >gi|254293197|ref|YP_003059220.1| ribonucleotide-diphosphate reductase subunit alpha [Hirschia baltica ATCC 49814] gi|254041728|gb|ACT58523.1| ribonucleoside-diphosphate reductase, alpha subunit [Hirschia baltica ATCC 49814] Length = 621 Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 215/676 (31%), Positives = 318/676 (47%), Gaps = 103/676 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L G Q F RVA A + + A Y+ +S Sbjct: 39 RDELLTEFGKKTLTDRYILPGEGY-----QEMFARVAEAYA----DDAEHAQRIYDYMSR 89 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL V D L GI EN LA GG+G W VR Sbjct: 90 LWFMPATPVLSNGGAGRGLPISCFLNDVNDSLDGIVETWNENVWLASNGGGIGTYWGNVR 149 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G I G GK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 150 SIGETI-GNAGKTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEIRKP 208 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM+ V + + L SP G+E Sbjct: 209 SGDFNRKSLNLHHGLNISDAFMEAVKNDEEFGLISPKT--------GEE----------- 249 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 +KI+A LW+K+L + +TG P++ + D N P Q+ +G+ V SNLC Sbjct: 250 --------VKKINARKLWQKILEVRIQTGEPYLIYSDTVNNAMPAHQRQLGMKVKQSNLC 301 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +EI L++ ++ TAVC L S+N F + D + L R VL + ID Sbjct: 302 SEIMLHTGLDHLGNDRTAVCCLSSVN-AEKFLEWKNDENFLEDIFRFLDNVLQDFIDRAP 360 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + +A S R++GLGLMG S L +++P S A + + I + +ASV+ Sbjct: 361 PEMARAAYSATRERSVGLGLMGMHSFLQSMNVPMESATAKSWNNMIFKHIRRGSDAASVK 420 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERG + G++A R Sbjct: 421 LAKERGPCPD------------AEECGVMA----------------------------RF 440 Query: 761 SNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 S+ MAIAPTA+I+ IC G S I+P N+Y +SG FTV N L L+ + + Sbjct: 441 SHKMAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPHLEKVLEAKGKNTDG 500 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + + + +GS+ ++ + + K TAFEID WLIE A+ R +I QAQSLNL+L Sbjct: 501 IWAIILEAEGSVQGLDFLDEHEKATFRTAFEIDQRWLIELAADRTPYICQAQSLNLFLPA 560 Query: 880 PSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 K L ++ AW GLK+ YY RS+ SV++++ G + K+ + P+ Sbjct: 561 DIDKWDLHMLHWSAWEKGLKSLYYCRSK---SVQRASFAGAEDKVKVEGMDTPD------ 611 Query: 939 GIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 612 ------TDYDECLACQ 621 >gi|157825768|ref|YP_001493488.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia akari str. Hartford] gi|157799726|gb|ABV74980.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia akari str. Hartford] Length = 607 Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLISP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV KI A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVNKIRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ +T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLASLN-LEYYEEWKDDKEFIYSIMLFLDNVLEDFINKAPNTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS A AS+E+ +E+G Sbjct: 346 KYSALRERSVGLGVMGFHSFLQIKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + + K++ TA+EID WLIE AS R +I QAQSLN+++ KK Sbjct: 486 THEGSVQHLTFLSEAEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFVPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 574 >gi|91205548|ref|YP_537903.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia bellii RML369-C] gi|91069092|gb|ABE04814.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia bellii RML369-C] Length = 607 Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 208/637 (32%), Positives = 306/637 (48%), Gaps = 92/637 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKEHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + IH Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLASRGGGIGSYWGNVRSINEAIH 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -NKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 ++ +++ I D FM+ V N + L SP Sbjct: 194 KSLNIHHGIAITDKFMQAVENNTDFELISP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLHVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + + + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIPTIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E++S ASV++ +E+G Sbjct: 346 KYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYVSKEVEEASVKIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERLLEEKGFNNDQVWSSIS 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE A+ R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQAQSLNVFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLKG 918 L+ I+ +AW G+K+ YY RS S A V LKG Sbjct: 546 LNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKG 582 >gi|227827566|ref|YP_002829346.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent [Sulfolobus islandicus M.14.25] gi|238619723|ref|YP_002914549.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent [Sulfolobus islandicus M.16.4] gi|227459362|gb|ACP38048.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent [Sulfolobus islandicus M.14.25] gi|238380793|gb|ACR41881.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent [Sulfolobus islandicus M.16.4] Length = 838 Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 233/830 (28%), Positives = 392/830 (47%), Gaps = 126/830 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +LE I+ + S +V+ IV ++ N+ D ++ ++ Sbjct: 12 KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 R LIE Y FL+E +R VL +Y +H Sbjct: 68 --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321 DF+ E+D Y L++L RY L N R IE PQ F Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143 Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 RVA LA E +E E + +E FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203 Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+K Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 V + + + QGGKR+GA + WH D+E+F+ R TG + + + N + D Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532 FM+ V + L +P + + G++ E Y N E ++G Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377 Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E V R ++A +L+ +++ +++G P + F D N R P Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628 ++G ++++N C E L CNLGSINL + + D+D LA I Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR LDNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + + Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739 FI +HA AS+E+A+E+G + ++ L+ + +S+ +AEV D+ + + Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 ++ + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732 Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + Q+W D ++++NL +EP + ++ +Y AW +G+K R +S Sbjct: 733 QAAWQQWNDSGTSKTINLRFEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781 >gi|157827264|ref|YP_001496328.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia bellii OSU 85-389] gi|157802568|gb|ABV79291.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia bellii OSU 85-389] Length = 607 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 208/637 (32%), Positives = 306/637 (48%), Gaps = 92/637 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKEHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + IH Sbjct: 75 PILSNGGTDRGLPISCFLNETGDSLDDIVNLWTENVWLASRGGGIGSYWGNVRSINEAIH 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -NKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 ++ +++ I D FM+ V N + L SP Sbjct: 194 KSLNIHHGIAITDKFMQAVENNTDFELISP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLHVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + + + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIPTIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E++S ASV++ +E+G Sbjct: 346 KYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYVSKEVEEASVKIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERLLEEKGFNNDQVWSSIS 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE A+ R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQAQSLNVFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLKG 918 L+ I+ +AW G+K+ YY RS S A V LKG Sbjct: 546 LNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKG 582 >gi|157803770|ref|YP_001492319.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia canadensis str. McKiel] gi|157785033|gb|ABV73534.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia canadensis str. McKiel] Length = 607 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 208/629 (33%), Positives = 301/629 (47%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + IH Sbjct: 75 PILSNGGTDRGLPISCFLNETNDSLDDIVNLWTENVWLASRGGGIGSYWGNVRSINEEIH 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ G D R Sbjct: 135 -NKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPIGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 ++ +++ I D FM V N + L SP Sbjct: 194 KSLNIHHGIAITDEFMNAVENNTDFNLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVTNKVRARDLWIKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + + TAVC L S+N L +F + D + S + VL++ I+ T+ +A Sbjct: 287 TGIDHLGNSRTAVCCLSSLN-LEYFEEWKDDKAFIHSIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS A AS+E+ +E+G Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + + K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLSAEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 574 >gi|15892570|ref|NP_360284.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia conorii str. Malish 7] gi|15619734|gb|AAL03185.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia conorii str. Malish 7] Length = 607 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS AS+E+ +E+G Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574 >gi|238650261|ref|YP_002916113.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia peacockii str. Rustic] gi|238624359|gb|ACR47065.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia peacockii str. Rustic] Length = 607 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS AS+E+ +E+G Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574 >gi|323474617|gb|ADX85223.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus REY15A] gi|323477349|gb|ADX82587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus HVE10/4] Length = 838 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 232/830 (27%), Positives = 390/830 (46%), Gaps = 126/830 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +LE I+ + S +V+ IV ++ N+ D ++ ++ Sbjct: 12 KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 R LIE Y FL+E +R VL +Y +H Sbjct: 68 --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321 DF+ E+D Y L++L RY L N R IE PQ F Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143 Query: 322 MRVAMGLALKETEKEKRAVE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 RVA LA E + +K E FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 144 RRVARFLASVERKYDKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203 Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+K Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 V + + + QGGKR+GA + WH D+E+F+ R TG + + + N + D Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532 FM+ V + L +P + + G++ E Y N E ++G Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377 Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E V R ++A +L+ +++ +++G P + F D N R P Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628 ++G ++++N C E L CNLGSINL + + D+D LA I Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR LDNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + + Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739 FI +HA AS+E+A+E+G + ++ L+ + +S+ +AEV D+ + + Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVTDKPSDYVKKLTS 613 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 ++ + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732 Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + Q+W D ++++NL +EP + ++ +Y AW +G+K R +S Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781 >gi|227830253|ref|YP_002832033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.S.2.15] gi|229579068|ref|YP_002837466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.G.57.14] gi|284997676|ref|YP_003419443.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.D.8.5] gi|227456701|gb|ACP35388.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.S.2.15] gi|228009782|gb|ACP45544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.G.57.14] gi|284445571|gb|ADB87073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.D.8.5] Length = 838 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 233/830 (28%), Positives = 392/830 (47%), Gaps = 126/830 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +LE I+ + S +V+ IV ++ N+ D ++ ++ Sbjct: 12 KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 R LIE Y FL+E +R VL +Y +H Sbjct: 68 --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321 DF+ E+D Y L++L RY L N R IE PQ F Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143 Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 RVA LA E +E E + +E FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203 Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+K Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 V + + + QGGKR+GA + WH D+E+F+ R TG + + + N + D Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532 FM+ V + L +P + + G++ E Y N E ++G Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377 Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E V R ++A +L+ +++ +++G P + F D N R P Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628 ++G ++++N C E L CNLGSINL + + D+D LA I Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR LDNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + + Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739 FI +HA AS+E+A+E+G + ++ L+ + +S+ +AEV D+ + + Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 ++ + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732 Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + Q+W D ++++NL +EP + ++ +Y AW +G+K R +S Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781 >gi|71083846|ref|YP_266566.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Pelagibacter ubique HTCC1062] gi|71062959|gb|AAZ21962.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus Pelagibacter ubique HTCC1062] Length = 645 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 214/682 (31%), Positives = 313/682 (45%), Gaps = 107/682 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY + E Q F RVA A + A YN +S+ Sbjct: 55 RDSKLTDFGKATLKDRYL-----GQNESFQDLFARVASSYA----DDNLHAQRIYNYISN 105 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W +R Sbjct: 106 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYWGNLR 165 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G I G GK+ G+IPF+KV + +A++QG R+G+ YL H ++EEF+++R+ Sbjct: 166 SIGEKI-GKVGKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIEMRRP 224 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + + Sbjct: 225 TGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPADGT------------------- 265 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNL 584 V + ISA LW ++LT ETG P+I + D N + PQ H V +SNL Sbjct: 266 --------VQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVKTSNL 317 Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635 C+EITL + + TAVC L S+NL + +++ D + I +R LDNV Sbjct: 318 CSEITLPTGIDKNGRDRTAVCCLSSLNLEKY---DEWKDDNV--MINDVMRFLDNVLTDF 372 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I+ + AK S R++GLG+MGF S L IP S + + + I H Sbjct: 373 IERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVD 432 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA ERGA +++ Sbjct: 433 QASKDLADERGACPDAADYGYNE------------------------------------- 455 Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 R SN AIAPTA+I+ IC G S ++P N Y +SG F V N +LV L++ Sbjct: 456 ---RFSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHG 512 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + + S + + GS+ +++ + D K + TAFE+D W+IE + R +I QAQS+N Sbjct: 513 KNTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSIN 572 Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 L++ K+ L I+ AW GLK+ YY RS+S E +N TD N+ Sbjct: 573 LFVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE---------NVNDTKATDVNA 623 Query: 934 STHSLGIPSSCTSD-TECEVCQ 954 + + ++ + EC CQ Sbjct: 624 NVYKSKPQTTEQPEYEECLSCQ 645 >gi|300870142|ref|YP_003785013.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira pilosicoli 95/1000] gi|300687841|gb|ADK30512.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira pilosicoli 95/1000] Length = 771 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 224/809 (27%), Positives = 383/809 (47%), Gaps = 114/809 (14%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I+ DG FN ++L+ ++ A G + ++ ++ K + D + L LI ++ Sbjct: 12 IIKRDGREEPFNEEKLKKVINWATDGKEGFTNALLEGLNIK-INDRMKIEVLYDELINTA 70 Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 I P+Y + + L K+ +E T KK H + ++++GVK Sbjct: 71 VNKISPLYPSYDTIAEKLYLMKIYKE--TCKLKKTGSYPHIKT----------FLKKGVK 118 Query: 266 ARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ ++++ D +L + + + +RD F Y GL I Y +Y +I ++E+PQ + Sbjct: 119 HKVYDKNIVSLFSDKELDKINSMIVPDRDLLFTYKGLAIFYRKYCKNIGSKKLELPQITY 178 Query: 322 MRVAMG--------------LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 M AM + +T++ K Y++LS +TP + NS + PQ Sbjct: 179 MVAAMFSFYDDFYKGANKDIVEKTKTDRLKYIKRTYDMLSKHEVTFATPRIANSMSIRPQ 238 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L+SC L T DD + + A+ +K+SGG+ D + +R G+ I G+S G +PF Sbjct: 239 LASCILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQSNRGRSDGPVPF 298 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K T + NQGG RKGA WH+DV + + L+ G + R + + I + Sbjct: 299 IKRTEQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISN 358 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 + +RV ++ TLF P E L++ +G+ F +AY YE ++ + ++I A L Sbjct: 359 ILRERVNKDEYITLFDPKETPLLNEEFGENFNVAYIYYESKSSIRK----KRIKAKDLLF 414 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------- 592 ++L + ETG+ ++TF D NI V +SNLC EI + S Sbjct: 415 QILKVRQETGNLYLTFVD--NINEQNMVNKFVGASNLCQEIVIPSFPSKLIEEKYVVNED 472 Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 S E +CNL S+NL++ F +K S T +R DN+ID + + Sbjct: 473 GSYEIVQRKKSGEIGICNLVSVNLMSWV---NFSEEKKKSFCYTLLRGCDNIIDSQFYPV 529 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ + +N +R IG+G++ + + L + Y EA+E ++ E + +H AS LA+ Sbjct: 530 KEGEIANKKNRPIGIGVINYANLLASNKLKYTDKEALEFTNKIFEDLYYHIYEASNILAK 589 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLL---AEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 ERG Y +F S W +G P+ I LL + ++ ++ M++ W++L + +K G+R Sbjct: 590 ERGPYKTFNESKWREGKTPV-HISLLNKSSNLKFDIDMDK-----WNKLAENIKNYGVRF 643 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S AIAPTAT ++SI+P +V+ F V E Sbjct: 644 SFHGAIAPTATSGKSVSATESIEP----------------IVDLFFVEE----------- 676 Query: 821 ISDLKYHDGSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 I + + +LKK + ++I +IE A+ RQ++IDQ+QSLNLY Sbjct: 677 ---------GIQTLPSLAPNLKKNREYYERCWDIPAKTIIELAAIRQRYIDQSQSLNLYY 727 Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905 +P S K+L + A +GLKT YY+++ Sbjct: 728 VKPDSAKELWDDIQYAMDLGLKTLYYMKT 756 >gi|157828521|ref|YP_001494763.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933239|ref|YP_001650028.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia rickettsii str. Iowa] gi|157801002|gb|ABV76255.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908326|gb|ABY72622.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia rickettsii str. Iowa] Length = 607 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 194 KALNIHHGIAITDEFMKAVKNNTDFDLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS AS+E+ +E+ Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEK- 404 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 GV P D L R SN AI Sbjct: 405 ------------GVCP-----------DALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574 >gi|73667183|ref|YP_303199.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia canis str. Jake] gi|72394324|gb|AAZ68601.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake] Length = 622 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 207/645 (32%), Positives = 302/645 (46%), Gaps = 103/645 (15%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 Y RD G +L DRY L E Q F+R++ ++ + A Y+ + Sbjct: 35 YGRDNNLTSFGKAVLSDRYLLEN-----EDYQQLFVRISEYY----SDNPEHAQRLYDYM 85 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 86 SQLWFMPATPILSNGGTNRGLPISCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYWGN 145 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +G + G+ GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLDLR Sbjct: 146 LRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDLR 204 Query: 467 KNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 K TG D R+ +++ + D FMK V + W L SP + S Sbjct: 205 KPTGGDPNRKALNIHHGVVLSDKFMKCVENDEPWDLISPKDQS----------------- 247 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSS 582 V + A +W K+LT ETG P+I F D P+ + + + S Sbjct: 248 ----------VIFTVKARDIWIKILTTRVETGEPYILFIDQVEQNKPEIYKKLNLNIKMS 297 Query: 583 NLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLAST---IRTAVRVLDN 634 NLCTEITL + + TA+C L S+NL Y+K I +R LDN Sbjct: 298 NLCTEITLTTGYDHLNKSRTAICCLASLNLEY--------YEKWKDNSLFIEDVMRFLDN 349 Query: 635 V----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V I+ + +E+AK S R+IG+G+MGF S L IP+ S A + I Sbjct: 350 VLTDFIEKAPNDMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHI 409 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 HA +AS +A E+G+ + D GV Sbjct: 410 KRHADAASYNIAMEKGSCPDAQ----DAGVIE---------------------------- 437 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 R N ++IAPTA+I+ I G S I+P N++ ++G F V N FL Sbjct: 438 --------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKL 489 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L + +E + S + ++GS+ +++ + ++ K I TA+E+D W+IE S R K+I Q Sbjct: 490 LIVKGKDNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQ 549 Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 AQS+N++L K+ L I+ AW GLK+ YY RS+S +K Sbjct: 550 AQSVNIFLPANVHKRYLHKIHFLAWKKGLKSLYYCRSKSIQRADK 594 >gi|229586744|ref|YP_002845245.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia africae ESF-5] gi|228021794|gb|ACP53502.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia africae ESF-5] Length = 607 Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----QGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS AS+E+ +E+G Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRIPYITQAQSLNIFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574 >gi|315497332|ref|YP_004086136.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis excentricus CB 48] gi|315415344|gb|ADU11985.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis excentricus CB 48] Length = 625 Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 219/680 (32%), Positives = 319/680 (46%), Gaps = 110/680 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +D G + L DRY L E Q F RVA A + + A YN +S+ Sbjct: 42 KDDKLTEFGKKTLDDRYLLAG-----ETYQDMFARVATAYA----DDSEHAQRIYNYISN 92 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G + SCFL VPD L GI EN LA GG+G W VR Sbjct: 93 LWFMPATPVLSNGGAKRGLPISCFLNAVPDSLEGIVSVWNENVALASNGGGIGTYWGGVR 152 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G G++ G+IPF++V + +A++QG R+G+ Y++ +H ++EEFL++RK Sbjct: 153 SIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYIDIFHPEIEEFLEIRKP 211 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ I D FM+ V A + L SP +N E Sbjct: 212 SGDFNRKALNLHHGISITDEFMEAVRDGAQFGLRSP------------------KNNE-- 251 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLC 585 + R + A ALW+K+L + +TG P++ F D N + Q+ +G+ V SNLC Sbjct: 252 -------IIRYVDARALWQKILEIRMQTGEPYLIFADTVNRSMAPHQRELGLKVKQSNLC 304 Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 EI L++ E TAVC L S+N A ++ I +R LDNV++ Sbjct: 305 AEIMLHTGKDHLGHERTAVCCLSSVN-----AETFLEWRDEPRFIEDIMRFLDNVLEDFI 359 Query: 641 HT----IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + A S R++GLGLMGF S L + + S A + + A Sbjct: 360 QSAPDAMSAAIYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADK 419 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ASV+LAQERG L AE R + Sbjct: 420 ASVKLAQERGPC-------------------LDAEERGVME------------------- 441 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N FL L ++ + Sbjct: 442 --RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPFLRALLAEKGI 499 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + H+GS+ +I+ + +D K I TAFEID W++E A+ R I Q+QSLN+ Sbjct: 500 DTPETWDSIVEHEGSVQHIDALSEDEKAIFKTAFEIDQRWVVELAADRAPEICQSQSLNI 559 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L K L ++ AW G+K+ YYLRS+ SV+++ G +GK AV + Sbjct: 560 FLPGDVDKWDLHMLHWTAWEQGVKSLYYLRSK---SVQRAAFAGSEGKAAAVSMA----- 611 Query: 935 THSLGIPSSCTSDTECEVCQ 954 S T EC CQ Sbjct: 612 ------ASGKTDYEECLACQ 625 >gi|229584769|ref|YP_002843271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus M.16.27] gi|228019819|gb|ACP55226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus M.16.27] Length = 838 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 233/830 (28%), Positives = 391/830 (47%), Gaps = 126/830 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +LE I+ + S +V+ IV ++ N+ D ++ ++ Sbjct: 12 KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 R LIE Y FL+E +R VL +Y +H Sbjct: 68 --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321 DF+ E+D Y L++L RY L N R IE PQ F Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143 Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 RVA LA E +E E + +E FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203 Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+K Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 V + + + QGGKR+GA + WH D+E+F+ R TG + + + N + D Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532 FM+ V + L +P + + G++ E Y N E ++G Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377 Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E V R ++A +L+ +++ +++G P + F D N R P Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628 ++G ++++N C E L CNLGSINL + + D+D LA I Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR LDNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + + Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739 FI +HA AS+E+A+E+G + ++ L+ + +S+ +AEV D+ + Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTG 613 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTIVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 ++ + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732 Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + Q+W D ++++NL +EP + ++ +Y AW +G+K R +S Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781 >gi|154250960|ref|YP_001411784.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154154910|gb|ABS62127.1| ribonucleoside-diphosphate reductase, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 218/686 (31%), Positives = 314/686 (45%), Gaps = 102/686 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G L DRY + E Q F RVA A K A Y+ Sbjct: 62 VDHGRDALLTEFGKATLRDRYLMPG-----ESYQDMFARVASFYADKG--DAGHAQRLYD 114 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT+ SCFL D L GI G EN LA GG+G+ W Sbjct: 115 YISKLWFMPATPVLSNGGTQRGLPISCFLNEASDSLDGIVGLWNENVWLAAKGGGIGSYW 174 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G NGK+ G+IPF++V + +A++QG R+G+ YL H ++EEF++ Sbjct: 175 GNLRSIGETV-GGNGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLPIDHPEIEEFME 233 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V +A W L SP + S Sbjct: 234 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVEADAEWQLKSPKDRS--------------- 278 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580 V + +SA +LW ++LT ETG P+I +KD N P+ H G+ V Sbjct: 279 ------------VQKTVSARSLWIRLLTSRIETGEPYIIYKDTVNNARPEHHKLAGLEVK 326 Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +SNLC EITL + + TAVC L S+NL + N D+ + I +R LDNV Sbjct: 327 TSNLCAEITLPTGIDQHGEQRTAVCCLSSLNLETY--NEWQDH---PTIIEDVMRFLDNV 381 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ID + +AK + R++GLG+MGF S L IP+ A I Sbjct: 382 LQDFIDRAPDDMRRAKYAAMRERSVGLGVMGFHSYLQANMIPFEGVMAKVWNKRMFARIK 441 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +AS +LA+ERGA E N Sbjct: 442 EGVDAASKKLAEERGACPDAA----------------------EYGFNE----------- 468 Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R SN AIAPTA+I+ I G S I+P N + +SG F V N L L Sbjct: 469 -------RFSNKTAIAPTASISIITGGTSPGIEPIAANSFTHKTLSGSFNVRNRHLTKLL 521 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D+ S + + GS+ +++ + D+ K + TAFE+D W+IE A R +DQA Sbjct: 522 ELKGRNDDDTWSSIVVNGGSVQHLDFLSDEEKDVFKTAFELDQRWVIEHAGDRAPLVDQA 581 Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG-VDGKLNAVPV 928 QS+NL+L K+ L ++ AW G+K+ YY RS S EK+ + + GK+ V Sbjct: 582 QSVNLFLAADVHKRDLHKLHFMAWQHGVKSLYYCRSLSIQRAEKAEVVSLLPGKVLDVLT 641 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 D + + EC CQ Sbjct: 642 LD------QVAAEAQSNDYEECLACQ 661 >gi|31322340|gb|AAP15463.1| ribonucleotide reductase large subunit [Rickettsia rickettsii str. 'Sheila Smith'] Length = 607 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 194 KALNIHHGIAITDEFMKAVKNNTDFDLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S A + E+IS AS+E+ +E+ Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEK- 404 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 GV P D L R SN AI Sbjct: 405 ------------GVCP-----------DALDAGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGPFNVRNKHLERLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574 >gi|58040421|ref|YP_192385.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconobacter oxydans 621H] gi|58002835|gb|AAW61729.1| Ribonucleoside-diphosphate reductase alpha chain [Gluconobacter oxydans 621H] Length = 658 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 207/634 (32%), Positives = 297/634 (46%), Gaps = 97/634 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L +RY L E QA F RVA ++ Y+ +S Sbjct: 61 RDSLLTDFGKATLNNRYLL-----PGEDYQALFARVASYYGADAGHAQR----IYDYISR 111 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI G EN LA GG+G+ W +R Sbjct: 112 HWFMPATPVLSNGGTERGLPISCFLNEAEDSLSGIVGLWNENVWLASKGGGIGSYWGNLR 171 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G +I G NGK+ GVIPF++V + +A++QG R+G+ YL WH +VEEF+++R+ Sbjct: 172 SIGENI-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEVEEFVEMRRP 230 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + S + Sbjct: 231 TGGDPNRKALNLHHGVLVTDAFMRAVENDEEWALLSPKDHSTI----------------- 273 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584 RK+SA LW ++LT E G P+I + D N P+ H G+ V +SNL Sbjct: 274 ----------RKVSARGLWIRILTARMEQGEPYIIYSDHVNRARPEHHKLAGLEVKTSNL 323 Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635 C EITL + TAVC L S+NL ++ I + LDNV Sbjct: 324 CAEITLPTGIDHHGKNRTAVCCLSSLNL-----ETWDEWKDDPQFIEDVMLFLDNVLQDF 378 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID + +AK + R++GLG+MGF S L IP+ S A + E I A Sbjct: 379 IDRAPDDMARAKYAAARERSVGLGVMGFHSFLQARMIPFESVMAKVWNRKIFEHIRKQAD 438 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS LA+ RG G + Sbjct: 439 AASKHLAEVRGPCPDAA------------EYGFME------------------------- 461 Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 R S+ +AIAPTA+I+ I G S I+P N++++ +SG F+V N L L++R Sbjct: 462 ---RFSHKLAIAPTASISIITGNASPGIEPISANVFLQKTLSGSFSVRNRHLKKILEERG 518 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + + S + + GS+ N++ + D K + TAFE+D W++E A+ R +I QAQS+N Sbjct: 519 YDTDEVWSAITLNKGSVQNLDFLTQDEKDVFKTAFELDQRWVVEHAADRAPFICQAQSVN 578 Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 L+L K+ L I+ QAW GLK+ YY RS S Sbjct: 579 LFLPADVHKRDLHQIHFQAWKKGLKSLYYCRSLS 612 >gi|225631267|ref|ZP_03787950.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591041|gb|EEH12240.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 584 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 202/636 (31%), Positives = 315/636 (49%), Gaps = 97/636 (15%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 F G +L DRY + E Q F R+A ++ ++ A Y+ +S+ FM Sbjct: 4 FTDFGKAVLSDRYLI-----ENESYQDLFARIANYY----SDNKEHAQRLYDYMSNLWFM 54 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 STP L N GT+ SCFL D L GI EN LA GG+G+ W +R +G Sbjct: 55 PSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIGE 114 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + G+ GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLDLRK TG D Sbjct: 115 SVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLDLRKPTGGD 173 Query: 473 -RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R+ +++ A + D FM+ V + W L SP + N Sbjct: 174 PNRKALNIHHAVIVTDKFMQAVENDQEWNLISP-----------------HNN------- 209 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEI 588 KV + A +W K+LT ETG P+I F D N P+ + + + SNLC+EI Sbjct: 210 ---KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIKMSNLCSEI 266 Query: 589 TLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--IN-- 639 TL + + TAVC L S+NL + +++ +KL I +R LDNV++ IN Sbjct: 267 TLTTGYDHLNKSRTAVCCLSSVNLEYY---EEWEDNKL--FIEDIMRFLDNVLEDFINKA 321 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++AK S R+IGLG+MGF S L +P+ S A + + +++ A S Sbjct: 322 PNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSK 381 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA+E+GA K + L+ R Sbjct: 382 KLAEEKGACPDAK------------EVDLME----------------------------R 401 Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 ++ +AIAPTA+I+ I G S I+P N++++ ++G F V N FL L +++ ++ Sbjct: 402 FTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDND 461 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + S + ++GS+ +++ + + K TA+E+D W+IE AS R +I Q+QS+NL+L Sbjct: 462 KIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASNRTSYICQSQSVNLFLP 521 Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 K+ L I+ AW GLK+ YY RS+S +K Sbjct: 522 ANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 557 >gi|254168705|ref|ZP_04875547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197622331|gb|EDY34904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 796 Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 243/893 (27%), Positives = 408/893 (45%), Gaps = 172/893 (19%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHN 87 ++VIKR+G + F KI +AIMKA ++ G G + RV + +++ + E V R Sbjct: 19 MKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKESRVER----- 73 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 + +E IQD VE +LM G+ + + Y+LYREER +R A K I Sbjct: 74 -----ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQA------------KKVI 116 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + D ++ N+ + V EA L+D + ++ ET + M++ + L IF Sbjct: 117 GVQDDLKLTVNAIK----VLEARYLLKDENGNVI--ETPRQMFERTARY-LALVDIFYED 169 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 + +KE ++E V +KP+ + E L F + +EG Sbjct: 170 DIYDKEGK-------------QKERKIDVEEKPEFLSIWEFNML-KRAFTYFSKEG---- 211 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 M D Y+ + LK + D +IE + F V + Sbjct: 212 -----YMKVDFSYVLDSLKSKWD----------------------KIERVKNKFAEVML- 243 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 ++ ++PTL N+ T+ QLS+CF+ VPD + GIF A+ Sbjct: 244 --------------------HRKYVPNSPTLMNANTKLGQLSACFVLPVPDSIEGIFNAV 283 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + AM+ K GG G ++ +R G + T G + G + F++V + + QGGKR+GA Sbjct: 284 KYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGA 343 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 L H D+ EF+ + + + + + N + + D FM + ++ + L +P Sbjct: 344 NMGVLSVHHPDILEFITSKDS---ENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPRN- 399 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 G+E ++I A +W ++T ++TG P + F D Sbjct: 400 -------GEEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEV 433 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N + P +H+G + S+N C E L CNLGSINL N + +D L T+ T Sbjct: 434 NRKHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDDLRDTVHT 489 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AV +DNVID N + + + + R IGLG+MG+ L L IPY S EAVE+A++ M Sbjct: 490 AVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVM 549 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 +FI+ + AS++LA++RG + +++GS W W Sbjct: 550 KFINEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK 580 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFL 806 K + +RN+ IAPT TI+ I G S SI+P + +++ + G + VN Sbjct: 581 ------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVLDGQELLEVNPLF 634 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +K+ L+ E ++ + GS+ +I+ +P+++K++ TA +IDP+W + + QK+ Sbjct: 635 EEIMKREGLYSEELMHKVA-ETGSVQHIDDVPENIKRLFRTAHDIDPVWHVRMQAAFQKY 693 Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915 +D A +++NL D S ++ Y AW + K T Y S++ + K T Sbjct: 694 VDNAVSKTVNLRHD-ASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIYKGT 745 >gi|225619346|ref|YP_002720572.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira hyodysenteriae WA1] gi|225214165|gb|ACN82899.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira hyodysenteriae WA1] Length = 773 Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 224/803 (27%), Positives = 379/803 (47%), Gaps = 100/803 (12%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I+ DG FN ++L +++ A G + +++++ K + D + L LI ++ Sbjct: 12 IIKRDGREEPFNEEKLRKVIDWATEGKEAFTNQLLEGLNIK-INDKMKIEVLYDELINTA 70 Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +I P Y + + L K+ +E T KK H + ++++G+K Sbjct: 71 VNMISPLYPMYDTIAEKLYLMKIYKE--TCGLKKIGSYPHIK----------NFLKKGIK 118 Query: 266 ARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ + ++ D +L + + + RD F Y GL I Y +Y +I ++E+PQ + Sbjct: 119 YKIYDKDIIQLFTDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITY 178 Query: 322 MRVAM--------------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 M AM L + ++E+ K Y++LS +TP + NS T Q Sbjct: 179 MVAAMFSFYDDYYKGENKDKLEISKSERLKYIKRTYDMLSRHEVTFATPRIANSMTIKAQ 238 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L+SC L T DD + + A+ +K+SGG+ D + +R G+ I G+S G IPF Sbjct: 239 LASCILNTPADDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPF 298 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K T + NQGG RKGA WH+DV + + L+ G + R + + I + Sbjct: 299 IKRVEQTISSFNQGGVRKGACVVTFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISN 358 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 +F +RV ++ TLF P E L++ YG++F +AY YE ++ + K+ A L Sbjct: 359 IFRERVNKDGYVTLFDPKETPLLNEEYGEKFNVAYIYYESKSSIRKKKI----KAKDLLF 414 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------- 592 ++L + ETG+ ++TF D NI V +SNLC EI + S Sbjct: 415 QILKVRQETGNLYLTFVD--NINEQNMVNRFVGASNLCQEIVIPSYPSKLIKEKYVINED 472 Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 S E +CNL S+NL++ F +K S T +R DN+ID + + Sbjct: 473 GEYEIIQRKKSGEIGICNLVSVNLMSWV---NFSPEKKKSFCYTLLRGCDNIIDTQFYPV 529 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ + +N +R IG+G++ + + L I Y EA+E ++ + + +H AS LA+ Sbjct: 530 KEGEIANKKNRPIGIGVINYANLLASNKIKYTDKEALEFTNKVFDDLYYHIYEASNILAR 589 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 ERG Y +F S W +G+ P I LL + + WD+L + +K G+R S Sbjct: 590 ERGPYKTFNESKWKEGLTPF-HISLLNNNKKNNLNVSVDKEKWDKLAENIKNNGVRFSFH 648 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAPTAT ++SI+P +V+ F + E Q +++ + Sbjct: 649 GAIAPTATSGKSVSATESIEP----------------IVDLFFIEEGIQT---LPSLVPN 689 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SG 882 +K + ++ + + I +IE A+ RQ++IDQ+QSLNLY +P S Sbjct: 690 IKKN--------------REYYERCWNIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSA 735 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905 K+L + A +GLKT YY+++ Sbjct: 736 KELWDDIQYAMDLGLKTLYYMKT 758 >gi|289596835|ref|YP_003483531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|289534622|gb|ADD08969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 785 Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 243/893 (27%), Positives = 408/893 (45%), Gaps = 172/893 (19%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHN 87 ++VIKR+G + F KI +AIMKA ++ G G + RV + +++ + E V R Sbjct: 8 MKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKESRVER----- 62 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 + +E IQD VE +LM G+ + + Y+LYREER +R A K I Sbjct: 63 -----ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQA------------KKVI 105 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + D ++ N+ + V EA L+D + ++ ET + M++ + L IF Sbjct: 106 GVQDDLKLTVNAIK----VLEARYLLKDENGNVI--ETPRQMFERTARY-LALVDIFYED 158 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 + +KE ++E V +KP+ + E L F + +EG Sbjct: 159 DIYDKEGK-------------QKERKIDVEEKPEFLSIWEFNML-KRAFTYFSKEG---- 200 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 M D Y+ + LK + D +IE + F V + Sbjct: 201 -----YMKVDFSYVLDSLKSKWD----------------------KIERVKNKFAEVML- 232 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 ++ ++PTL N+ T+ QLS+CF+ VPD + GIF A+ Sbjct: 233 --------------------HRKYVPNSPTLMNANTKLGQLSACFVLPVPDSIEGIFNAV 272 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + AM+ K GG G ++ +R G + T G + G + F++V + + QGGKR+GA Sbjct: 273 KYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGA 332 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 L H D+ EF+ + + + + + N + + D FM + ++ + L +P Sbjct: 333 NMGVLSVHHPDILEFITSKDS---ENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPRN- 388 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 G+E ++I A +W ++T ++TG P + F D Sbjct: 389 -------GEEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEV 422 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N + P +H+G + S+N C E L CNLGSINL N + +D L T+ T Sbjct: 423 NRKHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDDLRDTVHT 478 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AV +DNVID N + + + + R IGLG+MG+ L L IPY S EAVE+A++ M Sbjct: 479 AVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVM 538 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 +FI+ + AS++LA++RG + +++GS W W Sbjct: 539 KFINEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK 569 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFL 806 K + +RN+ IAPT TI+ I G S SI+P + +++ + G + VN Sbjct: 570 ------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVLDGQELLEVNPLF 623 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +K+ L+ E ++ + GS+ +I+ +P+++K++ TA +IDP+W + + QK+ Sbjct: 624 EEIMKREGLYSEELMHKVA-ETGSVQHIDDVPENIKRLFRTAHDIDPVWHVRMQAAFQKY 682 Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915 +D A +++NL D S ++ Y AW + K T Y S++ + K T Sbjct: 683 VDNAVSKTVNLRHD-ASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIYKGT 734 >gi|58584952|ref|YP_198525.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419268|gb|AAW71283.1| Ribonucleotide reductase, alpha subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 594 Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 203/644 (31%), Positives = 315/644 (48%), Gaps = 97/644 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + +E++ G +L DRY + E Q F+R+A ++ ++ A Y+ Sbjct: 6 INHEKNGKLTDFGKAVLSDRYLI-----ENESYQDLFIRIANYY----SDNKEHAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM STP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G+ GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 117 GNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ A + D FM+ V + W L SP Y Sbjct: 176 IRKPTGGDPNRKALNIHHAVIVDDRFMQAVESDLEWNLISP-----------------YN 218 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580 N KV I A +W K+LT ETG P+I F D N P+ + + + Sbjct: 219 N----------KVISTIKARDIWIKILTARIETGEPYIIFLDAINNNKPESYKRLNLDIK 268 Query: 581 SSNLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 SNLC+EITL + + TAVC L S+NL + ++ +++L I +R LDNV Sbjct: 269 MSNLCSEITLTTGYDHLNKLRTAVCCLSSVNLEYY---KEWRHNEL--FIEDIMRFLDNV 323 Query: 636 ID--IN--CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ++ IN I++AK S R+IGLG+MGF S L +P+ S A + + +++ Sbjct: 324 LEDFINKAPDEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLR 383 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A S +LA+E+GA D +N R Sbjct: 384 KQADMVSKKLAEEKGA------------------------CLDAKEINLMERF------- 412 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++ +AIAPTA+I+ I G S I+P N++ + ++G F V N FL L Sbjct: 413 ---------THKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLL 463 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +++ ++ + S + ++GS+ +++ + K TA+E+D W+IE AS R +I Q+ Sbjct: 464 AEKNQNNDKIWSSISTNEGSVQHLDFLNKHEKLTFRTAYELDQRWIIEHASDRTPYICQS 523 Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS+NL+L K+ L I+ AW GLK+ YY RS+S +K Sbjct: 524 QSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 567 >gi|304320879|ref|YP_003854522.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula bermudensis HTCC2503] gi|303299781|gb|ADM09380.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula bermudensis HTCC2503] Length = 628 Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 217/679 (31%), Positives = 325/679 (47%), Gaps = 114/679 (16%) Query: 261 EEGVKAR----LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 EEG K R L+ E ++D RD G + DRY L E Sbjct: 21 EEGTKQRPALKLVREVVVD-----------RSRDALLTDFGKTTMDDRYLLEG-----ES 64 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q F RVA + A Y+ +S FM +TP L N G SCFL V Sbjct: 65 YQDMFARVATAYG----DDADHAQRIYDYISKLWFMPATPVLSNGGASRGLPISCFLNAV 120 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L GI G EN LA GG+G W VR +G + G +G++ G+IPF++V + + Sbjct: 121 DDSLDGIVGTWNENVWLASNGGGIGTYWGGVRSIGESVKG-HGQTSGIIPFIRVMDSLTL 179 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 A++QG R+G+ YL+ H ++EEFL++RK +GD R++ +++ I D FM+ V ++ Sbjct: 180 AISQGSLRRGSAACYLDIHHPEIEEFLEIRKASGDFNRKSLNLHHGINITDAFMEAVARD 239 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 + L SP GE V R ++A LW+K+L + +T Sbjct: 240 EEFGLLSPKT-------------------------GE--VLRTVNARKLWQKILEIRLQT 272 Query: 557 GHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNS-----SSEETAVCNLGSINLL 608 G P++ F D N + Q+ +G+ V +SNLC EI L++ E TAVC L S+N Sbjct: 273 GEPYLVFADTVNRSMAKHQRDLGLKVSTSNLCAEIMLHTGEDHLGQERTAVCCLSSVN-- 330 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKK--SNHTHRAIGLGLMGFQ 664 A F++ + I +R LDNV++ IN E AK S R++GLGLMGF Sbjct: 331 ---AEKYFEWKDEPTFIEDVMRFLDNVLEDFINRAPPEMAKAVYSARRERSVGLGLMGFH 387 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 S L + +P+ S A + + I A +ASV LA+ERGA Sbjct: 388 SFLQQMGVPFESAMAKSWNIKLFKHIRMGADAASVTLAEERGAC---------------- 431 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSID 783 L + I R S+ MAIAPTA+I+ IC G S I+ Sbjct: 432 ------------------------LDAAERGIKQRFSHKMAIAPTASISIICGGASPCIE 467 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P N+Y +SG FTV N L L+++ D+ + + ++GS+ +++ + D+ K Sbjct: 468 PIPANVYTHKTLSGSFTVKNRALEEMLEEKGCNDDDTWASILENEGSVQHLDCLTDEEKA 527 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYY 902 + TAFEID W+++ A+ R +I Q+QS+N++L K L ++ AW G+K+ YY Sbjct: 528 VFKTAFEIDQRWVVDLAADRAPFICQSQSVNVFLPGDINKWDLHMLHWTAWEKGVKSLYY 587 Query: 903 LRSRSATSVEKSTLKGVDG 921 RS+ SV+++ G G Sbjct: 588 CRSK---SVQRTQFAGGRG 603 >gi|114798532|ref|YP_759596.1| ribonucleotide-diphosphate reductase subunit alpha [Hyphomonas neptunium ATCC 15444] gi|114738706|gb|ABI76831.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomonas neptunium ATCC 15444] Length = 593 Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 206/644 (31%), Positives = 310/644 (48%), Gaps = 99/644 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA A + E +R Y+ +S Sbjct: 12 RDSLLTDFGKKTLDDRYLLPG-----ETYQDMFARVATAYA-DDAEHGQR---IYDYISR 62 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL V D L I EN LA GG+G W VR Sbjct: 63 LWFMPATPVLSNGGADRGLPISCFLNQVGDSLDDIVETWTENVWLASNGGGIGTYWGNVR 122 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G NG++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 123 SIGEKV-GQNGQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEIRKT 181 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM+ V + + L SP Sbjct: 182 SGDFNRKSLNLHHGINITDAFMEAVRNDEEFGLISPKS---------------------- 219 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 GE V + ++A LW+K+L + +TG P++ F D N P Q+ +G+ V SNLC Sbjct: 220 ---GE--VLKYVNARKLWQKLLELRMQTGEPYLLFTDTVNNALPAHQKRLGLKVTQSNLC 274 Query: 586 TEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +EITL + ++ TAVC L S+N A ++ K + R LDNV++ Sbjct: 275 SEITLPTGVDHRGTDRTAVCCLSSVN-----AETFLEWSKEPMFLEDIFRFLDNVLEDFI 329 Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + +A S R++GLG+MGF S L +++ S A + + + I A + Sbjct: 330 QRAPPEMARAVYSAKRERSVGLGVMGFHSFLQAMNVSMESATAKSLNLKIFKHIRQGADA 389 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ASV+LA+ERG + +G++A Sbjct: 390 ASVKLAKERGPCEDAR------------DVGMMA-------------------------- 411 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R SN MA+APTA+I+ IC G S I+P N+Y +SG FTV N L L + L Sbjct: 412 --RFSNKMAVAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNQQLETLLDTKGL 469 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + + + H+GS+ +++ + K + TAFE+D W+IE A+ R +I Q+QSLNL Sbjct: 470 NTNEIWTSILEHEGSVQHLDCLDAHEKDVFKTAFELDQRWIIELAADRTPFICQSQSLNL 529 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +L K L ++ AW GLK+ YY RS+ SV+++ G Sbjct: 530 FLPGDINKWDLHMLHWTAWERGLKSLYYCRSK---SVQRAAFAG 570 >gi|237678831|emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii] Length = 645 Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 218/689 (31%), Positives = 317/689 (46%), Gaps = 116/689 (16%) Query: 284 DLKYER--DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 DLK +R D G + DRY L E+ Q F RV+ A + A Sbjct: 55 DLKLDRTRDDLLTPFGKLTVTDRYLL-----AGELLQDMFARVSCAFA----DDVAHAQR 105 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 Y+ +S FM +TP L N GT SCFL +V D L GI G EN LA GG+G Sbjct: 106 LYDAMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIG 165 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 W VR +G + G G + G+IPF+ V + +A++QG R+G+ YL+ H ++EE Sbjct: 166 TYWGNVRSIGEKVKG--GVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEE 223 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL++RK +GD R++ +++ + D FM+ V + L SP Sbjct: 224 FLEIRKASGDFNRKSLNLHHGINVTDAFMRAVGAGTAFALRSP----------------- 266 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV- 578 R D V R+I A LW+++L +TG P++ F D N P Q+ +G+ Sbjct: 267 -----RTND-----VIREIDARQLWQRILENRLQTGEPYLLFIDTVNRSLPKHQRELGLK 316 Query: 579 VHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 V +SNLC+EITL + E TAVC L S+NL +++ I +R LD Sbjct: 317 VSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNL-----ETWDQWNEKPGFIEDVMRFLD 371 Query: 634 NV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 NV I + +++A+ + R++GLG+MGF S L IP S A Sbjct: 372 NVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMESVVAKSFNLNMFRK 431 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A +ASV LA+ERG D L Sbjct: 432 IRRDADAASVTLARERGPCP-------------------------------------DAL 454 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 ++ V R S+ +AIAPTA+I+ IC G S ++P N+Y +SG +V N L Sbjct: 455 ERGVMA---RFSHKIAIAPTASISIICGGTSACVEPIPANIYTHKTLSGAISVRNPHLAK 511 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L + A + H+GS+ +++ + + K + TAFEID W++E A+ R +I Sbjct: 512 LLAAKGADTSATWQSIIAHEGSVAHLDTLSEHEKAVFRTAFEIDQRWIVELAADRAAFIC 571 Query: 869 QAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG--VDGKLNA 925 Q+QS+NLYL K L ++ AW G+K+ YY RS+ S+ ++ G DG NA Sbjct: 572 QSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSK---SISRAAFAGNIADGD-NA 627 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 P P H T EC CQ Sbjct: 628 AP---PQPQRH--------TDYEECLACQ 645 >gi|229582181|ref|YP_002840580.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.N.15.51] gi|228012897|gb|ACP48658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.N.15.51] Length = 838 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 232/830 (27%), Positives = 391/830 (47%), Gaps = 126/830 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +LE I+ + S +V+ IV ++ N+ D ++ ++ Sbjct: 12 KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 R LIE Y FL+E +R VL +Y +H Sbjct: 68 --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321 DF+ E+D Y L++L RY L N R IE PQ F Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143 Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 RVA LA E +E E + +E FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203 Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+K Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 V + + + QGGKR+GA + WH D+E+F+ R TG + + + N + D Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532 FM+ V + L +P + + G++ E Y N E ++G Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377 Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E V R ++A +L+ +++ +++G P + F D N R P Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628 ++G ++++N C E L CNLGSINL + + D+D LA I Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR LDNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + + Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739 FI +HA AS+E+A+E+G + ++ L+ + +S+ +AEV D+ + + Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 ++ + L++ +L D +I + G I + +P L+K+ TA E+ P++ + Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIDDNVFMPRSLRKLFRTAHEVPPIYHVLH 732 Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + Q+W D ++++NL +EP + ++ +Y AW +G+K R +S Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781 >gi|239947954|ref|ZP_04699707.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922230|gb|EER22254.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 616 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 33 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 83 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 84 PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGIR 143 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+ +R+ TG D R Sbjct: 144 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIGIRRPTGGDVNR 202 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ I D FMK V N + L SP Sbjct: 203 KALNIHHGIAITDEFMKAVENNTDFDLISP---------------------------ATK 235 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 236 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 295 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ T+ +A Sbjct: 296 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 354 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S + E+IS A AS+E+ +E+ Sbjct: 355 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADKASIEIGKEK- 413 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 GV P D L R SN AI Sbjct: 414 ------------GVCP-----------DALDAGSNERF----------------SNKTAI 434 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 435 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 494 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 495 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNISKKY 554 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 555 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 583 >gi|254168812|ref|ZP_04875653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197622249|gb|EDY34823.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 796 Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 244/893 (27%), Positives = 406/893 (45%), Gaps = 172/893 (19%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87 ++VIKR+ + F KI +AIMKA ++ G + RV +++ + E V R Sbjct: 19 MKVIKRDSRIVDFSEDKIFQAIMKAMNSIGGYSEEDAQRVTWKVVEKIKESRVER----- 73 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 + +E IQD VE +LM G+ + + Y+LYREER +R A K I Sbjct: 74 -----ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQA------------KKVI 116 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + D ++ N+ + V EA L+D + ++ ET + M++ + L IF Sbjct: 117 GVQDDLKLTVNAIK----VLEARYLLKDENGNVI--ETPRQMFERTARY-LALVDIFYED 169 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 + +KE ++E V +KP+ + E L F + +EG Sbjct: 170 DIYDKEGK-------------QKERKIDVEEKPEFLSIWEFNML-KRAFTYFSKEG---- 211 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 M D Y+ + LK + D +IE + F V + Sbjct: 212 -----YMKVDFSYVLDSLKSKWD----------------------KIERVKNKFAEVML- 243 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 ++ ++PTL N+ T+ QLS+CF+ VPD + GIF A+ Sbjct: 244 --------------------HRKYVPNSPTLMNANTKLGQLSACFVLPVPDSIEGIFNAV 283 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + AM+ K GG G ++ +R G + T G + G + F++V + + QGGKR+GA Sbjct: 284 KYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGA 343 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 L H D+ EF+ + + + + + N + + D FM+ + ++ + L +P Sbjct: 344 NMGVLSVHHPDILEFITSKDS---ENKVLSNFNISVAVTDEFMEALLRDDYYPLRNPRN- 399 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 G+E +KI A +W ++T ++TG P I F D Sbjct: 400 -------GEE-------------------VKKIKARQVWDLIITQAWKTGDPGIIFIDEV 433 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N R P +H+G + S+N C E L CNLGSINL N + +D L T+ T Sbjct: 434 NRRHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDDLRDTVHT 489 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AV +DNVID N + + + + R IGLG+MG+ L L IPY S EAVE+A++ M Sbjct: 490 AVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVM 549 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 +FI+ + AS++LA++RG + +++GS W W Sbjct: 550 KFINEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK 580 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFL 806 K + +RN+ IAPT TI+ I G S SI+P + +++ + G + VN Sbjct: 581 ------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVLDGQELLEVNPLF 634 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +K+ L+ E ++ + GS+ +I+ +P+++K++ TA +IDP+W + + QK+ Sbjct: 635 EEIMKREGLYSEELMHKVA-ETGSVQHIDDVPENIKRLFRTAHDIDPVWHVRMQAAFQKY 693 Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915 +D A +++NL D S ++ Y AW + K T Y S++ + K T Sbjct: 694 VDNAVSKTVNLRHD-ASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIYKGT 745 >gi|330834375|ref|YP_004409103.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera cuprina Ar-4] gi|329566514|gb|AEB94619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera cuprina Ar-4] Length = 820 Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 194/717 (27%), Positives = 355/717 (49%), Gaps = 83/717 (11%) Query: 264 VKARLLHESMMDFDLVYLANDL--------KY----ERDFAFEYLGLQILYDRYFLHING 311 ++ L H+ +MD Y+ + + K+ ++D Y L++L RY L Sbjct: 72 IEGSLEHQELMDLAKRYVLSRIYNHVFGKGKWKGIDDKDLLISYNALKVLEARYLLKNPE 131 Query: 312 S--RIEMPQAFFMRVAMGLA-LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 + +E PQ F RVA LA ++ ++++ +FY+++S+ F+ +TP L NSGTR L Sbjct: 132 TLRYVETPQMMFRRVASYLAGVEREKRKEIEEKFYDIMSTLRFVPNTPALMNSGTRLGIL 191 Query: 369 SSCFLTTVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 S+CF+ V D + GI+ L+ A++ + GG G D++ +R G + T G + G Sbjct: 192 SACFVLPVKDSMTTQNGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASG 251 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTA 482 + F+K+ + + V QGGKR+GA + WH D+E+F +R TGD + + + N + Sbjct: 252 PVSFMKIFDVSTDVVKQGGKRRGANMGVMHVWHADIEDF--IRSKTGDLKDVQLQNFNIS 309 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE---IAYENYERQ----------- 528 + D FM+ V + L +P + + G + E + NY R+ Sbjct: 310 VGVYDYFMEAVMKEEQVPLITPRKTK----IKGTDHEYYIVKARNYMREDWVQEEILREL 365 Query: 529 -------ADRGEI--------------KVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 D +I + R ++A L+++++ +++G P + F D Sbjct: 366 EERGPVYLDESKIITVDEALAIAESEGAIIRWVNARNLFQQIVKGAWDSGDPGLLFIDEI 425 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLAS 623 N R P ++G + ++N C E L S CNLGS+NL D++ L + Sbjct: 426 NRRHPVWYLGKIQATNPCGEEPLLSWES----CNLGSLNLELFVKEKNGKPYIDWEDLTN 481 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 I+ AVR LDNV+D N + + + +++ R +GLG+MG AL L IPY S +A+ ++ Sbjct: 482 VIKYAVRFLDNVVDANRYPLPQIEQATKMTRKVGLGVMGLARALIKLGIPYDSVDAIYVS 541 Query: 684 DESMEFISFHAISASVELAQERGAYSSFK----GSLWDQGVFPIDSIGLLAEVRDELA-- 737 +FI + A+ AS+ELA+E+G++ ++ +W+ + I ++EV+ E + Sbjct: 542 YNLAKFIYYQAMKASIELAKEKGSFPAYDPVRYKDIWESAK-EFEDILAISEVKGEPSDY 600 Query: 738 ----MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 M +++ ELK G+RN+ +++APT TI+ I G S SI+P + ++++ Sbjct: 601 AKAIMAEAAKIDISELKDLRMRYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRN 660 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G F ++ + L++ +L +I + G +G+ +P ++++ TA E++P Sbjct: 661 VAVGKFMEIDPLFLEYLRKYELDTPEVIKKIA-ESGEVGDNPFVPKTIRRLFRTAHEVEP 719 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 M+ + + Q+W D S + L E + + + +Y AW +G+K R +S + Sbjct: 720 MYHVLHQAAWQQWNDSGTSKTINLRSEETEETVGKVYLTAWRLGIKGITVYRDKSKS 776 >gi|258542156|ref|YP_003187589.1| ribonucleotide-diphosphate reductase subunit alpha [Acetobacter pasteurianus IFO 3283-01] gi|256633234|dbj|BAH99209.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636293|dbj|BAI02262.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639346|dbj|BAI05308.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642402|dbj|BAI08357.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645457|dbj|BAI11405.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648510|dbj|BAI14451.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651563|dbj|BAI17497.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654554|dbj|BAI20481.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-12] Length = 643 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 207/637 (32%), Positives = 301/637 (47%), Gaps = 103/637 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L +RY L G Q F RVA ++ Y+ +S Sbjct: 50 RDALLTPFGKATLDNRYLLPDEGY-----QDLFGRVASYYGADAAHAQR----IYDYISK 100 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 101 HWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYWGNLR 160 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G ++ G NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++LR+ Sbjct: 161 SIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRRP 219 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + S Sbjct: 220 TGGDPNRKALNLHHGVLVSDAFMRAVESDDEWALISPKDGS------------------- 260 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584 V RKISA LW ++LT E G P+I + D N P+ H G+ V +SNL Sbjct: 261 --------VIRKISARGLWIRILTARMEQGEPYIVYSDHVNNARPEHHKLAGLEVKTSNL 312 Query: 585 CTEITLNSSSE-----ETAVCNLGSINL--LAHFANN-QFDYDKLASTIRTAVRVLDNV- 635 C+EITL + + TAVC L S+NL + +N QF I + LDNV Sbjct: 313 CSEITLPTGIDHHGKARTAVCCLSSLNLETWDQWKDNPQF--------IEDVMLFLDNVL 364 Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 ID + +AK + R++GLG+MGF S L ++P+ S A + + I Sbjct: 365 QDFIDRAPEDMHRAKYAAMRERSVGLGVMGFHSFLQSRNVPFESVVAKVWNRKIFKHIRE 424 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A +AS +LA+ RG + G++ Sbjct: 425 QADAASRKLAELRGPCPD------------AEEYGIME---------------------- 450 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 R SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L+ Sbjct: 451 ------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQKLLE 504 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ + S + GS+ +++ + K + TAFE+D W++E A+ RQ +I QAQ Sbjct: 505 EKGQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRQPFICQAQ 564 Query: 872 SLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 S+NL+L K+ L I+ AW GLK+ YY RS S Sbjct: 565 SVNLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLS 601 >gi|34580443|ref|ZP_00141923.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia sibirica 246] gi|28261828|gb|EAA25332.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia sibirica 246] Length = 573 Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 200/607 (32%), Positives = 292/607 (48%), Gaps = 84/607 (13%) Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q F RV+ A E ++ A + Y +S FM +TP L N GT SCFL Sbjct: 7 QDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETD 62 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I EN LA GG+G+ W VR + I G S G+IPF+KV + +A Sbjct: 63 DSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR-DKGHSSGIIPFIKVMDSMTLA 121 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQN 496 ++QG R+G+ YL H ++EEF+D+R+ TG D R+ +++ I D FMK V N Sbjct: 122 ISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENN 181 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 + L SP KV K+ A LW K+LT ET Sbjct: 182 TDFDLVSP---------------------------ATKKVVNKVRARDLWVKLLTTRIET 214 Query: 557 GHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLNS-----SSEETAVCNLGSINLL 608 G P++ F D N P+ H +G+ V SNLC+EITL + TAVC L S+N L Sbjct: 215 GEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLN-L 273 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 ++ + D + + S + VL++ I+ T+ +AK S R++GLG+MGF S L Sbjct: 274 EYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQ 333 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + +P S A + E+IS AS+E+ +E+GA Sbjct: 334 MKKVPIESVMAKVWNKKIFEYISDETDKASIEIGKEKGA--------------------- 372 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQ 787 D L R SN AIAPTA+I+ I G S I+P Sbjct: 373 ---CPDALDAGSNERF----------------SNKTAIAPTASISVIAGNASPGIEPFAA 413 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 N +V+ ++G F V N L L+++ ++ + S + H+GS+ ++ + ++ K++ T Sbjct: 414 NSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKT 473 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSR 906 A+EID WLIE AS R +I QAQSLN++L KK L+ I+ +AW G+K+ YY RS Sbjct: 474 AYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRST 533 Query: 907 SATSVEK 913 S +K Sbjct: 534 SIQRADK 540 >gi|330903418|gb|EGH33990.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] Length = 160 Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 125/160 (78%), Positives = 139/160 (86%), Gaps = 1/160 (0%) Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRT Sbjct: 1 TNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRT 60 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIK 535 HDMNTANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE + G+IK Sbjct: 61 HDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIK 120 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +F+ I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQH Sbjct: 121 LFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQH 160 >gi|330814260|ref|YP_004358499.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487355|gb|AEA81760.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 648 Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 218/674 (32%), Positives = 313/674 (46%), Gaps = 113/674 (16%) Query: 270 HESMMDF---DLVYLAND-------------LKYERDFAFEYLGLQILYDRYFLHINGSR 313 +E++ D DL L+ND + RD G L DRY + Sbjct: 25 NENLQDLKRPDLFSLSNDTELFQNEKGITIRIDRSRDSKLTDFGKATLVDRYL-----NE 79 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E Q F RVA A ++ YN +S+ FM STP L N+GT SCFL Sbjct: 80 GESYQDLFARVASTYADDNLHGQR----IYNYMSNLWFMPSTPVLSNAGTERGLPISCFL 135 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L GI EN LA GG+G+ W +R +G + G GK+ G++PF+KV + Sbjct: 136 NEASDSLNGIVDLWSENVWLAAKGGGIGSYWGNLRSIGEQV-GRVGKTSGIMPFIKVMDS 194 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKR 492 +A++QG R+G+ YL H ++EEF+++R+ TG D RR +++ + D FM+ Sbjct: 195 LTLAISQGSLRRGSAACYLPIDHPEIEEFIEMRRPTGGDPNRRALNLHHGVLVTDAFMRA 254 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + W L SP HD G ++ +SA LW ++LT Sbjct: 255 VELDEQWPLKSP------HD-------------------GTVQ--SSMSARNLWIRLLTA 287 Query: 553 LFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITL-----NSSSEETAVCNLGS 604 ETG P+I F D N PQ H G+ V +SNLC+EITL S + TAVC L S Sbjct: 288 RVETGEPYIVFIDTVNRMIPQHHKLAGLTVKTSNLCSEITLPTGIDKSGRDRTAVCCLSS 347 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGL 660 +NL + +++ +K+ + ++ LDNV I + A + R++GLG+ Sbjct: 348 LNLETY---DEWKDEKI--MLEDIMKFLDNVLTDFITRAPESFSDATYAAMRERSVGLGV 402 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGF S L IP S A ++ + I +ASV+LA+ERG D G+ Sbjct: 403 MGFHSFLQKNSIPIESVMAKVWNNKMFKQIDKEVNAASVKLAEERGPCPDAA----DYGI 458 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVS 779 R SN AIAPTA+I+ IC G S Sbjct: 459 ME------------------------------------RFSNKTAIAPTASISIICGGAS 482 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P N Y +SG F V N +L L + + + + S + + GSI ++ + D Sbjct: 483 PGIEPVAANSYTHKTLSGSFNVRNKYLKQILAKYEKDTDEVWSSITTNQGSISHLNFLSD 542 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLK 898 K + TAFEID WLI+ ++ R ++ QAQSLN++L KK L I+ QAW GLK Sbjct: 543 LEKDVFKTAFEIDQRWLIDHSADRTPYVSQAQSLNVFLPADVHKKDLHQIHFQAWKKGLK 602 Query: 899 TTYYLRSRSATSVE 912 + YY RS+S E Sbjct: 603 SMYYCRSKSIQRAE 616 >gi|68171691|ref|ZP_00545050.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|88658153|ref|YP_507276.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia chaffeensis str. Arkansas] gi|67998883|gb|EAM85576.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|88599610|gb|ABD45079.1| ribonucleoside-diphosphate reductase, alpha subunit [Ehrlichia chaffeensis str. Arkansas] Length = 595 Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 208/644 (32%), Positives = 307/644 (47%), Gaps = 97/644 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + YERD G +L DRY L E Q F+R++ ++ + A Y+ Sbjct: 6 VDYERDNNLTAFGKAVLSDRYLLEN-----EDYQQLFVRISEYY----SDNPEHAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSQLWFMPATPILSNGGTNRGLPVSCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G+ GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 117 GNLRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ + + FMK V + W L SP + S Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSNKFMKCVENDEPWDLISPKDQS--------------- 220 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580 V I A +W K+LT ETG P+I F D + P+ + + + Sbjct: 221 ------------VLFTIKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIK 268 Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 SNLCTEITL + + TA+C L S+NL + Q+ + L I +R LDNV Sbjct: 269 MSNLCTEITLTTGYDHLNKSRTAICCLASLNLEYY---EQWKDNSLF--IEDVMRFLDNV 323 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 I+ +E+AK S R+IG+G+MGF S L IP+ S A + I Sbjct: 324 LTDFIEKAPSEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIR 383 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 HA +AS +A E+G+ + D G+ Sbjct: 384 KHADAASYNIAMEKGSCLDAQ----DAGIVE----------------------------- 410 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R N ++IAPTA+I+ I G S I+P N++ ++G F V N FL L Sbjct: 411 -------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLL 463 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K + +E + S + ++GS+ +++ + ++ K I TA+E+D W+IE S R K+I QA Sbjct: 464 KLKGKDNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQA 523 Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS+N++L K+ L I+ AW GLK+ YY RS+S +K Sbjct: 524 QSVNIFLPANVHKRYLHKIHFLAWRKGLKSLYYCRSKSIQRADK 567 >gi|114568950|ref|YP_755630.1| ribonucleotide-diphosphate reductase subunit alpha [Maricaulis maris MCS10] gi|114339412|gb|ABI64692.1| ribonucleoside-diphosphate reductase, alpha subunit [Maricaulis maris MCS10] Length = 637 Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 206/647 (31%), Positives = 313/647 (48%), Gaps = 91/647 (14%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RVA A +TE +R Y+ +S Sbjct: 53 RDAFLTEFGKKTLEDRYLLPG-----ESYQDMFARVATAYA-DDTEHAQR---LYDYISQ 103 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL +V D L I G EN LA GG+G W VR Sbjct: 104 LWFMPATPVLSNGGADRGLPISCFLNSVGDSLDDIVGTWTENVWLASNGGGIGTYWGDVR 163 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G I G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 164 SIGEKI-GEIGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 222 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM+ V + +EFE+ + Sbjct: 223 SGDFNRKSLNLHHGLNISDAFMEAVRDD-------------------EEFEL------KS 257 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 GE V + ++A LW+K++ + +TG P+I + D N P Q+ +G+ V SNLC Sbjct: 258 PKSGE--VVKTVNARKLWQKIIELRLQTGEPYIIYSDTVNRALPAHQRKLGLKVRQSNLC 315 Query: 586 TEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 EI L + E TAVC L S+N A + + + D + R VL + ID Sbjct: 316 AEIMLPTGFDQNGKERTAVCCLSSLN-AAKYMEWKDNPDFIEDIYRFLDNVLQDFIDRAP 374 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +++A S R++GLGLMG + L ++ P+ S A + + I A +ASV+ Sbjct: 375 AEMDRAVYSAIQERSVGLGLMGMHTLLQQMNAPFESAMAKSWNLKLFKHIRTAADAASVK 434 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERGA + S + R Sbjct: 435 LAEERGACPDAEAS----------------------------------------GVKARF 454 Query: 761 SNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 S+ +AIAPTA+I+ IC GVS I+P N+Y +SG TV N L L+ + L Sbjct: 455 SHKLAIAPTASISIICGGVSAGIEPIPANVYTHKTLSGSTTVKNPQLEAVLEAKGLNTPG 514 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 M + + +GS+ ++E + + K TAFEID W+IE A+ R ++ Q+QSLN++L Sbjct: 515 MWASILEAEGSVQHLECLDEHEKATFRTAFEIDQRWVIEHAADRTPYVCQSQSLNIFLPG 574 Query: 880 PSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 K L ++ AW G+K+ YY RS+ S++++ G + K +A Sbjct: 575 DVDKWDLHMLHWSAWEKGVKSLYYCRSK---SIQRAAYAGSEKKSDA 618 >gi|328722126|ref|XP_003247490.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 767 Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 210/781 (26%), Positives = 368/781 (47%), Gaps = 51/781 (6%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYDGLSESD 197 A + L + DGT+ + + +++ C GL+ + + + K +Y G++ S Sbjct: 2 AELKKHLHVQKRDGTIEKVHYDAITARIKQLCYGLEKIDPAATAIHVIKKFLYAGITTSQ 61 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A ++ T+ P+Y K+ AR ++ ++K+ ++ + ++ Y Sbjct: 62 LDDAAAETAITMATIHPDYEKLAARI--------AISNLHKQTKEKFSDVIDDIHKNY-- 111 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 Y G+ + M D L + YE D+ +Y G + L + + IE P Sbjct: 112 NYWNIGLSDDIYEIIMKHKD--RLNEAINYENDYILDYFGFKYLIQHFLVKSENQTIERP 169 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--- 374 Q FM+VA+G+ + + A+E Y +LS M S P + +L+ ++ Sbjct: 170 QHLFMKVAVGIHGDDIDS---AIETYKMLSQKLCMFS-PVVMQLQPAARKLNVSVISHYS 225 Query: 375 --TVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D + GI+ +++ ++ + YS + +R G +I G+ G+S G +P + Sbjct: 226 VAMIADSIDGIYDTSIRLSSFILPYSS-VALHVHKIRAAGTYIQGSYGESSG-LPLMLKQ 283 Query: 432 NDTAVAVNQGGKRKGA---VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 D+ V ++ +R + V Y E WH D+ + +D + T + + A WIPD Sbjct: 284 YDSIVRNSETLERPKSIKGVTIYCELWHADIMKVIDQIRMTSIADIKLKNCQLALWIPDE 343 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV + W+ SPD L D++GKEF+ Y+ YE ++ V R+I A LW + Sbjct: 344 FMRRVQNDQMWSFMSPDHCPGLIDVHGKEFDNLYKEYELKSKSF---VMRQIEAKKLWSQ 400 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607 ++ ETG P + FKD CN +S + H+G + + + ++S+E A C SI++ Sbjct: 401 IIQSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVD 460 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS----NHTHRAIGLGLMGF 663 + + N FD+ KL T + L+ +ID N + K K+ AIG+G+ G Sbjct: 461 MFLTSENIFDFSKLKETAKKLTYDLNKIIDNNNVILNKEKQLELGLKQNQWAIGIGVQGL 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + P+ + EA + + E I + A+ AS ELA G Y +F S +G+ Sbjct: 521 ADLFIKMKYPFDNKEARVLNTQIHESIYYGALEASCELATTNGPYKTFPNSPTSKGLLQF 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D L V+ ++ W+ LK ++ G+RNS + T + ICG SI+ Sbjct: 581 D----LWNVKP------SNLWDWNNLKTKITQHGLRNSLVTVTSNTEVESTICGKVNSIE 630 Query: 784 PSYQNL---YVKSNMSG--DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 P N+ Y+ S + VVN L+ +L R LWD+ + L + GS+ I+ +P Sbjct: 631 PLDTNVKRRYISLGESKPKEIQVVNPHLLKDLHDRKLWDDNLKYQLMNNMGSVQEIKGLP 690 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 +DLK+++ T +EID LI A+ R +IDQ+Q+ +L + + + + W MGLK Sbjct: 691 EDLKQLYKTKWEIDQKDLIIMAADRAPFIDQSQAFSLNMVKADEDIISEMLISTWKMGLK 750 Query: 899 T 899 T Sbjct: 751 T 751 >gi|15604373|ref|NP_220889.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia prowazekii str. Madrid E] gi|3861065|emb|CAA14965.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (nrdA) [Rickettsia prowazekii] gi|292572127|gb|ADE30042.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia prowazekii Rp22] Length = 607 Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 202/629 (32%), Positives = 304/629 (48%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSHYA----ENKQHAQKLYEYMSQMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYWGNVRSINEAIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 ++ +++ I D FM+ V N + L SP Sbjct: 194 KSLNIHHGITITDEFMQAVENNMDFDLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 227 KVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPEHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + + TAVC L S+N L ++ + D + + S + VL++ I+ +T+ +A Sbjct: 287 TGIDHLGNSRTAVCCLASLN-LEYYEVWKDDKEFIHSIMLFLDNVLEDFINKAPNTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K + R++GLG++GF S L + IP S A + E+IS AS+E+ +++G Sbjct: 346 KYAAFRERSVGLGVIGFHSFLQMKKIPIESVMAKVWNKKIFEYISAEVDKASIEIGKDKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDSGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K+I TA+EID WLIE A+ R +I Q+Q+LN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNIFLHGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWKKGIKSLYYCRSTSIQRADK 574 >gi|302390649|ref|YP_003826470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosediminibacter oceani DSM 16646] gi|302201277|gb|ADL08847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosediminibacter oceani DSM 16646] Length = 772 Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 176/588 (29%), Positives = 288/588 (48%), Gaps = 78/588 (13%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A +FY++++ FM ++PTL N+G QLS+CF+ V D + GIFGA++ A++ K G Sbjct: 59 AEKFYDMMAELKFMPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFGAIKNAALIHKSGG 118 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G ++ +R GA + T G++ G + F+KV N AV QGG+R+GA L H D Sbjct: 119 GTGMSFSRLRPKGATVRSTGGEASGPVSFMKVFNAATEAVKQGGRRRGANMGILRVDHPD 178 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + EF+ + +D + N + I D FM+ + + + L P+ Sbjct: 179 ILEFIRCK----EDNNELTNFNISVAITDKFMETLKNDGTYELVDPNTG----------- 223 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 KV ++ A ++ ++ M ++ G P I F D N ++P H+G Sbjct: 224 ----------------KVTGRLKAREVFDLIVDMAWKNGEPGILFIDRVNAKNPTPHIGQ 267 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDN 634 + S+N C E L CNLGSINL N+ DY++L + AVR LD+ Sbjct: 268 IESTNPCGEQPLLPFES----CNLGSINLSKFVKEGSTGNEIDYEELKQVVHMAVRFLDD 323 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VID+N + + + ++ +R IGLG+MGF L L IPY S EAV++A+E M FI A Sbjct: 324 VIDVNKYPLPEIEQMTKANRKIGLGVMGFADMLIKLGIPYDSEEAVKLAEEVMGFIQREA 383 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 AS +LA+ RGA+ +F GS++D +P L Sbjct: 384 RKASEDLAKTRGAFPNFPGSVYD--------------------------VPGGPL----- 412 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQR 813 +RN+ IAPT TI+ I G S I+P + + ++ + + + E+++R Sbjct: 413 ---LRNATVTTIAPTGTISIIAGCSSGIEPVFALAFERNVLDKQRLIEIYPLFEEEMRRR 469 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 L+ ++ ++ GS+ I IP+++K++ TA +I P W + + QK+ D A S Sbjct: 470 GLYSPELMEEV-LEKGSLKGIAGIPEEVKRVFVTAHDISPEWHVRIQAAFQKYTDNAVSK 528 Query: 874 NLYLDEPSGKK-LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKG 918 + + ++ + +Y A+ +G K T Y SR ++K T +G Sbjct: 529 TVNFPHSATREDVKKVYLLAYELGCKGVTVYRDGSREEQVLKKGTRQG 576 >gi|254455714|ref|ZP_05069143.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082716|gb|EDZ60142.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 645 Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 207/635 (32%), Positives = 292/635 (45%), Gaps = 89/635 (14%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +D G L DRY H E Q F RVA A + A YN +S+ Sbjct: 55 KDANLTDFGKATLKDRYLGHN-----ESFQDLFARVASSYA----DDNLHAQRIYNYISN 105 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W +R Sbjct: 106 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLGGILDLWSENVWLAAKGGGIGSYWGNLR 165 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G I G GK+ G+IPF+KV + +A++QG R+G+ YL H ++EEF+++R+ Sbjct: 166 SIGEKI-GKVGKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIDHPEIEEFIEMRRP 224 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V + W L SP + Sbjct: 225 TGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPAD--------------------- 263 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNL 584 G I+ + ISA LW ++LT ETG P+I + D N PQ H V +SNL Sbjct: 264 ----GTIQ--QTISARNLWIRLLTARIETGEPYIIYIDTVNRLIPQHHKLANLTVKTSNL 317 Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 C+EITL + TAVC L S+N L + + D D + +R VL + I+ Sbjct: 318 CSEITLPTGIDKDGHDRTAVCCLSSLN-LEKYDEWKDDPDMIGDVMRFLDNVLSDFINKA 376 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + AK S R++GLG+MGF S L IP S A + + I AS Sbjct: 377 PDQFKDAKYSAGRERSVGLGVMGFHSFLQKNRIPLESVMAKSWNKKIFKQIDAQVNQASK 436 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA+ERGA + + E R Sbjct: 437 DLAEERGACPD------------------------------AAEYGYQE----------R 456 Query: 760 NSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 SN AIAPTA+I+ IC G S ++P N Y +SG F V N +L L+ D+ Sbjct: 457 FSNKTAIAPTASISIICGGASPGVEPIAANSYTHKTLSGSFNVRNRYLEEILESHGKNDD 516 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 S + + GS+ +++ + D K + TAFE++ W+IE + R +I QAQS+NL+L Sbjct: 517 ETWSTITTNQGSVSHLDFLTDLEKDVFKTAFELNQNWIIELSGDRTPFISQAQSVNLFLP 576 Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912 KK L I+ AW GLK+ YY RS+S E Sbjct: 577 ADVHKKELHKIHFDAWKKGLKSLYYCRSKSIQRAE 611 >gi|51473695|ref|YP_067452.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia typhi str. Wilmington] gi|51460007|gb|AAU03970.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington] Length = 607 Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 202/629 (32%), Positives = 303/629 (48%), Gaps = 89/629 (14%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G IL DRY + + E Q F RV+ A E ++ A + Y +S FM +T Sbjct: 24 FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSQMWFMPAT 74 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 75 PILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYWGNVRSINEAIR 134 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D R Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 ++ +++ I D FM+ V N + L SP Sbjct: 194 KSLNIHHGITITDEFMQAVENNMDFDLVSP---------------------------ATK 226 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P H +G+ V SNLC+EITL Sbjct: 227 KVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPAHHKKLGLQVKMSNLCSEITLP 286 Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+N L ++ + D + + S + VL++ I+ +T+ +A Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEVWKDDKEFIHSIMLFLDNVLEDFINKAPNTMARA 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K + R++GLG++GF S L + +P S A + E+IS AS+E+A+++G Sbjct: 346 KYAAFRERSVGLGVIGFHSFLQMKKVPIESVMAKVWNKKIFEYISSEVDKASIEIAKDKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D L R SN AI Sbjct: 406 A------------------------CPDALDSGSNERF----------------SNKTAI 425 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K+I TA+EID WLIE A+ R +I Q+Q+LN++L KK Sbjct: 486 THEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNIFLHGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 546 LNNIHFKAWKKGIKSLYYCRSTSIQRADK 574 >gi|70607111|ref|YP_255981.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639] gi|68567759|gb|AAY80688.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639] Length = 837 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 202/692 (29%), Positives = 338/692 (48%), Gaps = 88/692 (12%) Query: 289 RDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKET-----EKEKRAVE 341 RD Y L++L RY L N R IE PQ F RVA +A E EK+ + +E Sbjct: 109 RDLLISYNALKVLEARYLLKDPNTLRYIETPQMMFRRVARHIANVEKLYGKDEKQVKEIE 168 Query: 342 --FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLA 394 Y ++S+ F+ +TP L NSGTR LS+CF+ V D + GI+ AL+ A++ Sbjct: 169 DKLYEMMSNLKFIPNTPALMNSGTRLGILSACFVIPVRDAMSTPNGDGIYDALRAMALVH 228 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG G D++ +R G + T G + G + F+++ + + V QGGKR+GA + Sbjct: 229 QQGGGTGFDFSELRPKGDIVASTAGVASGPVSFMRIFDVSTDVVKQGGKRRGANMGVMHA 288 Query: 455 WHIDVEEFLDLRKNTGDDRRRTH--DMNTANWIPDLFMKRVTQNAGWTLFSPDEV----- 507 WH DV++F+ R TG+ R TH + N + + D FM V + L +P + Sbjct: 289 WHADVQDFI--RAKTGE-LRDTHLQNFNISVGVYDYFMNAVERGEAVPLINPRKTRIPGK 345 Query: 508 ----------SDLHDLYGKEF---EIAYENYERQADRGEI--------------KVFRKI 540 +HD +E+ E+ + D I + + + Sbjct: 346 DWDYYMTNARGYMHDESVQEYILKELEEKGGSVYLDESRIITVDEALVIAEKENAIVQWV 405 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 +A L+ +++ +++G P + F D N R P ++G ++++N C E L C Sbjct: 406 NARQLFDEIVKGAWDSGDPGLLFIDEINRRHPVWYIGKINATNPCGEEPLLPWES----C 461 Query: 601 NLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NLGSI+L D+D L I+ VR LDNVID N + +++ +++ R + Sbjct: 462 NLGSISLEKFVVEKDGKMSIDWDGLVEAIKYGVRFLDNVIDANRYPLKQIEEATKKTRKV 521 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK---- 712 GLG+MG L L IPY S +A+ I+ + +FI +HA+ S++LA+E+G++ ++ Sbjct: 522 GLGVMGLARMLIKLGIPYDSVDALYISYQLAKFIYYHALKTSIDLAKEKGSFPAYDPYYY 581 Query: 713 ----------GSLWDQGVF---PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 GSL + P D + L EV D RL + LK+ G+R Sbjct: 582 HDIWESARDFGSLLEVSNIKDKPSDYVKKLTEVVD--------RLDFSLLKEERIKFGLR 633 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS +++APT TI+ I G S SI+P + +V++ G F ++ + L++ +L D Sbjct: 634 NSTVVSVAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEIDPLFLEYLRKYELDDPE 693 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYL 877 ++ + G++ IP +KK+ TA E+ P + + + Q+W D ++++NL Sbjct: 694 VVQKIA-ETGTVAENPFIPRTMKKLFRTAHEVPPEYHVLHQAMWQQWNDSGTSKTINLKS 752 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +EP + ++ +Y AW +G+K R RS + Sbjct: 753 EEPP-ETVEKVYMLAWKLGIKGVTVYRDRSKS 783 >gi|328719872|ref|XP_003246886.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 766 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 211/788 (26%), Positives = 364/788 (46%), Gaps = 66/788 (8%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYDGLSESD 197 A + L + DGT+ + + +++ C GL+ + + + K ++ G++ S Sbjct: 2 AELKKHLYVQKRDGTIEKVHYDEIIARIKQLCYGLEKIDPAATAIHVIKKCLFAGITTSQ 61 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQC 250 L+ A + T+ P+Y K+ AR + L ++ V+ ++K Sbjct: 62 LDDAAAEMAITMATIHPDYEKLAARIAISNLHKQTKEKFSDVIDDIHKNDD--------- 112 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 Y G+ + M + D L + YE D+ +Y G + L + + Sbjct: 113 --------YWNTGLSDDIYEIIMKNKD--RLNEAINYENDYILDYFGFKYLTQNFLVKSE 162 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 IE PQ FM+VA+ + + + A+E Y +LS M S P + +L+ Sbjct: 163 NQTIERPQHLFMKVAVSIHGDDIDS---AIETYKMLSQKLCMFS-PVVMQLQPAARKLNV 218 Query: 371 CFLT-----TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 ++ + D + GI+ L + + +R G +I G+NGKS G + Sbjct: 219 SVISHYSVAMIADSIDGIYDTLNRLSTFILPYSSVAVHVHKIRAAGTYIKGSNGKSSG-L 277 Query: 426 PFLKVANDTAVAVNQGGKRKGA---VCAYLETWHIDVEEFLD-LRKNTGDDRRRTHDMNT 481 P + D+ V + +R + V Y E WH D+ + +D +RK T D + + Sbjct: 278 PLMLKQYDSMVHCKETLERPKSIKGVAIYCELWHADIMKIIDQIRKTTIADIK-LKNSQL 336 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A WIPD FM+RV + W+ SPD L D++G+EF+ Y+ YE ++ V R+I Sbjct: 337 ALWIPDEFMRRVENDQMWSFMSPDHCPGLIDVHGEEFDNLYKEYELKSKSF---VMRQIE 393 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LW +++ ETG P + FKD CN +S + H+G + + + ++S+E A C Sbjct: 394 AKKLWSQIIQSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCT 453 Query: 602 LGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK----SNHTHRAI 656 SI++ + + N FD+ KL T + L+ +I+ N + K + AI Sbjct: 454 TASISVDMFLTSENIFDFSKLKETAKKITYDLNKIIENNNVILNKEDQLKLGLKQNQLAI 513 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G+ G + P+ + EA + + E I + A+ AS ELA + G Y ++ S Sbjct: 514 GIGIQGLADLFIKMRYPFDNKEARYLNIQIHETIYYGALEASCELASKNGPYKTYPNSPT 573 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 +G+ D L V+ ++ W+ LK ++ G+RNS + T + I Sbjct: 574 SKGLLQFD----LWNVKP------SNLWDWNSLKTKIAQHGLRNSLVTVTSNTEVESTIF 623 Query: 777 GVSQSIDPSYQNL---YVKSNMS--GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 G SI+P N+ Y+ S + VVN +L+ +L R LWDE +I +L + GSI Sbjct: 624 GNVNSIEPLDTNVKRRYISLGESKPKEIQVVNPYLLKDLHDRKLWDEKLIPELVNNMGSI 683 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 I +PDDLK+++ T +EID L+ A+ R +IDQ+Q+ +L + + + + ++ Sbjct: 684 QEI-NLPDDLKQLYRTKWEIDQKVLVTMAADRAPFIDQSQAFSLNMVKANEDIISEMHIS 742 Query: 892 AWLMGLKT 899 W MGLKT Sbjct: 743 TWKMGLKT 750 >gi|307295358|ref|ZP_07575197.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium chlorophenolicum L-1] gi|306878861|gb|EFN10080.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium chlorophenolicum L-1] Length = 645 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 207/645 (32%), Positives = 309/645 (47%), Gaps = 101/645 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L P + + +A + A Y+ +S Sbjct: 59 RDALLTDFGKDTLQDRYLL---------PGESYQDLFARVAAAYADDADHAQRVYDYISR 109 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI EN LA GG+G W VR Sbjct: 110 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWGNVR 169 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 170 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 228 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM V GKEF A + + Q Sbjct: 229 SGDFNRKALNLHHGVLLTDEFMAAVRD-------------------GKEF--ALRSPKDQ 267 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 + RG ++A AL++K++ + TG P+I F D N P+ H +G+ V +SNLC Sbjct: 268 SVRG------SVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTSNLC 321 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL +++ DK + +R LDNV I Sbjct: 322 SEITLPTGRDHIGNDRTAVCCLSSLNLETW---DEWKDDK--QFVEDVMRFLDNVLQDYI 376 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK S R++GLG+MGF S L +P+ A + IS A Sbjct: 377 DRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHISEKAAE 436 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS++LA ERG D GV Sbjct: 437 ASMQLAVERGPCPDAA----DMGV------------------------------------ 456 Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 M +C MAIAPTA+I+ IC G S I+P N+Y +SG F + N +L L + Sbjct: 457 -MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFAIKNPYLEKLLVAKA 515 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 A+ + + GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLN Sbjct: 516 KDSTAVWNSILEKGGSVQHLDFLSQEEKDTFKTSFEIDQRWLLELAADRTPYIDQAQSLN 575 Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 L++ K L ++ +AW +G+K+ YYLRS+ SV+++ G Sbjct: 576 LFIPADVEKWDLLMLHYRAWELGIKSLYYLRSK---SVQRAGFAG 617 >gi|162147607|ref|YP_001602068.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209542239|ref|YP_002274468.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|161786184|emb|CAP55766.1| Ribonucleoside-diphosphate reductase large subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209529916|gb|ACI49853.1| ribonucleoside-diphosphate reductase, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 665 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 212/681 (31%), Positives = 314/681 (46%), Gaps = 99/681 (14%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L +RY L E Q F RV+ ++ Y+ +S Sbjct: 69 RDALLTPFGKATLDNRYLL-----EGESYQDLFGRVSSYYGADPGHAQR----LYDYMSR 119 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 120 HWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYWGNLR 179 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G ++ G NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++LR+ Sbjct: 180 SIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRRP 238 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V ++ W L SP + + + Sbjct: 239 TGGDPNRKALNLHHGVLVSDAFMRAVAEDGEWALLSPKDGAHI----------------- 281 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584 RKISA +LW ++LT E G P+I + D N P+ H G+ V +SNL Sbjct: 282 ----------RKISARSLWIRILTARMEQGEPYIIYSDHVNNARPEHHKMAGLEVKTSNL 331 Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635 C EITL + +E TAVC L S+NL ++ I + LDNV Sbjct: 332 CAEITLPTGMDHHGNERTAVCCLSSLNL-----ETWDEWKDDPRFIEDVMLFLDNVLQDF 386 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID +E+AK + R++GLG+MGF S L +IP+ S A + I A Sbjct: 387 IDRAPDDMERAKYAASRERSVGLGVMGFHSFLQANNIPFESVIAKVWNKRIFKHIREQAD 446 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+ RG G + Sbjct: 447 LASRKLAELRGPCPDAA------------EYGFME------------------------- 469 Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 R SN +AIAPTA+I+ I G S I+P N++++ +SG FTV N L+ L + Sbjct: 470 ---RFSNKLAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLLKLLIDKG 526 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 E + S + GS+ +++ + K + TAFE+D W++E A+ R +I QAQS+N Sbjct: 527 QNTEEVWSSITLTKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRAGYICQAQSIN 586 Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 L+L K+ L I+ AW G+K+ YY RS S + T+ V GK++ + Sbjct: 587 LFLPADVHKRDLHQIHYLAWKRGVKSLYYCRSLSIQRAD--TVSNVLGKVDVMADEPSAP 644 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 + P+S + EC CQ Sbjct: 645 APAPASPPASSNNYDECLACQ 665 >gi|220933052|ref|YP_002509960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halothermothrix orenii H 168] gi|219994362|gb|ACL70965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halothermothrix orenii H 168] Length = 766 Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 189/639 (29%), Positives = 315/639 (49%), Gaps = 98/639 (15%) Query: 284 DLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL------KETEKE 336 D+K R+ +++L RY +G IE P+ F RVA +A ++ E++ Sbjct: 3 DIKLTRN------AIKVLKARYLKRDASGELIETPEEMFKRVANNIASANEKYGEDPERD 56 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 K A F+NL++S F+ ++PTL N+ QLS+CF+ + D + GIF AL+ A++ K Sbjct: 57 KEA--FFNLMASLDFLPNSPTLMNADNDLQQLSACFVLPIEDSMDGIFDALKYTALIQKS 114 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG G ++ +R + T G + G I F+++ + V QGGKR+GA L H Sbjct: 115 GGGTGFSFSRLRPKSDIVKTTGGVASGPISFMEIFDAATNTVKQGGKRRGANMGILRVDH 174 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EF+ + D R ++ N + + D FM+ V ++ + L +P Sbjct: 175 PDIMEFITAKA----DENRLNNFNISVAVTDEFMEAVKKDEEYDLVNP------------ 218 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 R +V ++ A ++ K++ M + G P I F D N +P H+ Sbjct: 219 ----------RSG-----QVVGQLRAREVFNKIVEMAHKNGEPGIIFIDEINRHNPTPHL 263 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRV 631 G + S+N C E L CNLGSIN L+H N + D++KL +T+RTA R Sbjct: 264 GEIESTNPCGEQPLLPYE----ACNLGSIN-LSHMVKNEGDKPEVDFEKLENTVRTATRF 318 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + +E+ K+ +++R IGLG+MG+ L L IPY S AV +A++ M+FI+ Sbjct: 319 LDNVIDMNRYPLEQIKEMVYSNRKIGLGVMGWSDLLIRLGIPYNSDRAVNLAEKVMKFIN 378 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + S ++A++RG++ + +GS++D+ Sbjct: 379 EISHDESHKIARKRGSFPNIEGSIYDK--------------------------------- 405 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 MRN+ IAPT +I+ I G S I+P + Y + + V+ + + Sbjct: 406 -----SMRNATTTTIAPTGSISIIAGCSSGIEPLFAINYERHVLDDTLIEVHPYFEKIAR 460 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +R + E +++ + GSI + IP+D++KI TA +I+P W I+ + QKW+D A Sbjct: 461 ERGFYSEELMAKVAER-GSIQGMSEIPEDVQKIFVTAHDIEPEWHIKMQAAFQKWVDNAV 519 Query: 872 SLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRS 907 S + + E + + + +Y A+ + K T Y SRS Sbjct: 520 SKTVNFRHEATKEDVARVYTLAYDLKCKGVTIYRDGSRS 558 >gi|295691247|ref|YP_003594940.1| ribonucleoside-diphosphate reductase subunit alpha [Caulobacter segnis ATCC 21756] gi|295433150|gb|ADG12322.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter segnis ATCC 21756] Length = 625 Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 213/680 (31%), Positives = 317/680 (46%), Gaps = 108/680 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RVA A + A Y+ +S Sbjct: 40 RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVATAFA----DDADHAQRVYDYMSR 90 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL V D L GI G EN LA GG+G W VR Sbjct: 91 LWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYWGGVR 150 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 151 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 209 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM V + L SP Sbjct: 210 SGDFNRKSLNLHHGINITDEFMHAVRDGHKFGLRSPKTN--------------------- 248 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 +V R++ A ALW+K+L + +TG P++ F D N P Q+ +G+ V SNLC Sbjct: 249 ------EVLREVDARALWQKVLELRLQTGEPYLIFSDSVNNAMPSFQRELGLKVRQSNLC 302 Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EI L++ + E TAVC L S+N A ++ + I +R LDNV I Sbjct: 303 SEIMLHTGTDHLGNERTAVCCLSSVN-----AETFLEWRDHPTFIEDVMRFLDNVLQDFI 357 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D A + R++GLGLMGF S L ++P+ S A + + A Sbjct: 358 DRAPDAAASAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 417 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS++L +E+G A +R S Sbjct: 418 ASIKLGEEKGPCPD--------------------------AADRGSV------------- 438 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L N L ++ Sbjct: 439 -ERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLENLLAEKGQ 497 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +A+ + H+GS+ +++ + D K ++ TAFE+D W+IE A+ R I Q+QS+N+ Sbjct: 498 NTDAVWGSILEHEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNV 557 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L K L ++ AW G+K+ YYLRS+ SV+++ G + K+ A + Sbjct: 558 FLPGDVDKWDLHMLHWTAWERGVKSLYYLRSK---SVQRAAYAGAEDKVAA--------T 606 Query: 935 THSLGIPSSCTSDTECEVCQ 954 T +P D EC CQ Sbjct: 607 TSGFDVPEKTDYD-ECLACQ 625 >gi|291279559|ref|YP_003496394.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter desulfuricans SSM1] gi|290754261|dbj|BAI80638.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter desulfuricans SSM1] Length = 768 Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 181/628 (28%), Positives = 304/628 (48%), Gaps = 79/628 (12%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFH 350 L +L RY G+ +E P+ F RVAM +AL K + EK A EF++++ S Sbjct: 21 LTVLRKRYLKKDEKGNIVETPKGMFQRVAMNIALADLNYDKNADIEKTAKEFFDIMVSLK 80 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D L IF A++ A++ K GG G ++ +R Sbjct: 81 FLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSFSRLRPK 140 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F+ V + + QGG R+GA L H D+ EF+ +K Sbjct: 141 DDVVKTTKGVSSGPVSFMTVFDSATETIKQGGTRRGANMGILRVDHPDIMEFIYAKK--- 197 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D+ + + N + + + FM+ V + + L +P + Sbjct: 198 -DKTKLTNFNLSVAVTEKFMEAVIKGEDYPLINPKDG----------------------- 233 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KV +K++A ++ +M+ + +E G P I F D N +P G + S+N C E L Sbjct: 234 ----KVVKKLNAKEVFDQMVKLAWEGGDPGIVFIDRINKDNPTPKEGEIESTNPCGEQPL 289 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL N + +D+L I TAV LDNVID+N + I + ++ Sbjct: 290 LPYES----CNLGSINLGKFVKNKKILWDELKKVIHTAVHFLDNVIDMNNYPIPQIEEMT 345 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLG+MG+ + LL IPY S +A+++A++ M FI +ASV+LA++RG++ + Sbjct: 346 KKNRKIGLGVMGWADMMALLEIPYNSEDALKLAEKVMSFIQEEGRNASVKLAEKRGSFPN 405 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 FK S++ + F + +RN+ IAPT Sbjct: 406 FKDSIYPEKGFKM----------------------------------LRNATVTTIAPTG 431 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 TI+ I G S I+P + + ++ + D V + + E+ +R+ + + + G Sbjct: 432 TISIIAGASSGIEPYFAIAFYRNVLDNDKLVEVNPIFKEIAKREGFYSDELMEKIAESGH 491 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889 + +I+ +P+ K++ TA EI P+W ++ + Q++ D A S + + +E + + + +Y Sbjct: 492 LEDIDEVPEKWKRVFVTAHEISPIWHVKMQAAFQRYTDNAVSKTVNFPNEATVEDVREVY 551 Query: 890 RQAWLMGLK--TTYYLRSRSATSVEKST 915 A+ G K T Y SR + T Sbjct: 552 LLAYKEGCKGITIYRDGSREGQVINVGT 579 >gi|310831538|ref|YP_003970181.1| putative ribonucleotide reductase large subunit [Cafeteria roenbergensis virus BV-PW1] Length = 922 Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 151/427 (35%), Positives = 230/427 (53%), Gaps = 24/427 (5%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 ++ +T ++Y G++ +L+ + + +YA + R + L +E + T +K Sbjct: 54 IVKKTITSIYPGITTKELDNQSAYQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEK- 112 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + + + Y +IE K R ++D Y RD++F++ G++ Sbjct: 113 MELINDNLHI----YDSEWIEFIKKHRNKLNKIID-----------YNRDYSFDFFGIKT 157 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 + Y ++G IE PQ FMRVA +L ++ ++ YNL+S +F ++PTLFN Sbjct: 158 MERTYITKLDGHLIERPQDVFMRVA---SLVHCGDLQKTIDSYNLMSKKYFTHASPTLFN 214 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +G + L SCFL D + GI + A ++K+ GG+G + VR G+ I TNG Sbjct: 215 AGNKKGNLVSCFLLGTEDSMTGISKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGH 274 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S G++P L+V N VNQ G+RKG+ YLE H D+ +FL+LRKNTG + R D+ Sbjct: 275 SDGIVPMLQVYNSICRYVNQSGRRKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLF 334 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 A W+ DLFM +V N W LF PD+ L+D+YG E+E Y Y E K +KI Sbjct: 335 LALWVSDLFMNQVKLNNDWYLFCPDKAPGLNDVYGDEYETLYWKY-----VSEEKYNKKI 389 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW ++T FETG P++ +KD N +S Q+++G++ SSNLC EI S S ETA C Sbjct: 390 KARKLWEAIMTAQFETGSPYMLYKDNINKKSNQKNIGIIRSSNLCAEIVEYSDSTETAAC 449 Query: 601 NLGSINL 607 NL SI L Sbjct: 450 NLASIAL 456 Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 177/371 (47%), Gaps = 69/371 (18%) Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +DY+KL + + LD+VID N + +++++SN HR IGLG+ G L LL +PYA Sbjct: 545 YDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLALLRVPYA 604 Query: 676 SPEAVEIADESMEFISFHAISA-------------------------------------- 697 S A++I ++ I A++A Sbjct: 605 SKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEFYDDNFEC 664 Query: 698 ---------------SVEL--AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 S EL Q GAYS+F+GS + +G L + + +N Sbjct: 665 YPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEG-------KLQYHLWNRTPINI 717 Query: 741 TSRL---PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ + WD L +K G RNS A+ PTA+ + + G +S +P N+Y + ++G Sbjct: 718 STLIEGKSWDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRRTLAG 777 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+N+L + W + + +GSI NI +P+ +K I+ T++E+ ++I Sbjct: 778 EFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQKYII 836 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST- 915 + S R +IDQ QS+NLY +P +KL AW GLKT YYLRS+ + + K T Sbjct: 837 DGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANATKITV 896 Query: 916 -LKGVDGKLNA 925 L K+N+ Sbjct: 897 LLNNSQNKINS 907 >gi|302381297|ref|YP_003817120.1| ribonucleoside-diphosphate reductase, subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302191925|gb|ADK99496.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas subvibrioides ATCC 15264] Length = 631 Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 214/685 (31%), Positives = 322/685 (47%), Gaps = 104/685 (15%) Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 +L RD G + L DRY L E Q F RV+ A + A Y Sbjct: 37 ELDRTRDDLLTDFGKKTLEDRYLLAG-----ESYQDMFARVSTAYA----DDADHAQRVY 87 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + +S FM STP L N G SCFL +V D L GI EN LA GG+G Sbjct: 88 DYMSKLWFMPSTPVLSNGGANRGLPISCFLNSVQDSLDGIQRVWNENVSLASNGGGIGTY 147 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 W VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL Sbjct: 148 WGGVRSIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVHHPEIEEFL 206 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 ++RK +GD R++ +++ I D FM+ V + + L SP + + Sbjct: 207 EIRKPSGDFNRKSLNLHHGINITDEFMEAVKAGSDFALLSPKDQA--------------- 251 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VH 580 V R++ A +LW+K+L + +TG P++ F D N + P Q+ +G+ V Sbjct: 252 ------------VIRRVDARSLWQKILEIRLQTGEPYLIFSDTVNRQMPRHQRELGLKVK 299 Query: 581 SSNLCTEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 SNLC+EI L++ + TAVC L S+N A ++ + + +R LDNV Sbjct: 300 QSNLCSEIMLHTGPDHLGIDRTAVCCLSSVN-----AEMFLEWREEPRFVEDVMRFLDNV 354 Query: 636 ID--INCHTIEKAKK--SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ++ I E A S R++GLGLMGF S L + + S A + + Sbjct: 355 LEDFITRAPPEMAAAVYSAKRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLR 414 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A ASV+LA+E+G P ++ + Sbjct: 415 READKASVKLAEEKG--------------------------------------PCEDAAE 436 Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R + R S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L L Sbjct: 437 R--GVMERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLL 494 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +A+ S + H+GS+ ++ + DD K I TAFE+D W++E ++ R I QA Sbjct: 495 DGYGANTDAVWSSILEHEGSVQHLTMLNDDEKGIFKTAFELDQRWVVELSADRSPEICQA 554 Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QS+NL++ K L ++ AW G+K+ YYLRS+ SV+++ G + K P Sbjct: 555 QSINLFIPGDVNKWDLHMLHWSAWERGVKSLYYLRSK---SVQRAAFAGAEDKAEVEP-- 609 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 DPN P T EC CQ Sbjct: 610 DPNQPDLFSAAP---TDYDECLACQ 631 >gi|27375118|ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27348254|dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110] Length = 723 Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 212/685 (30%), Positives = 307/685 (44%), Gaps = 112/685 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L RD G L DRY L G Q F RV+ A + A Y+ Sbjct: 136 LDRSRDDLLTSFGRLTLTDRYLLAGEGL-----QDMFARVSCAFA----DNVAHAQRLYD 186 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL +V D L GI G EN LA GG+G W Sbjct: 187 AMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIGTYW 246 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G G G + G+IPF+ V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 247 GNVRSIGEKARG--GVTSGIIPFIHVTDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 304 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ + D FM V + L SP Sbjct: 305 IRKASGDFNRKSLNLHHGINVTDEFMCAVGAGTAFALRSPKTN----------------- 347 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHS 581 +V R+I A LW+++L +TG P++ F D N P Q+ +G+ V + Sbjct: 348 ----------EVVREIDARQLWQRILENRLQTGEPYLLFIDTVNRALPKHQRELGLEVST 397 Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635 SNLC+EITL++ E TAVC L S+NL +++ I +R LDNV Sbjct: 398 SNLCSEITLSTGIDHRGEERTAVCCLSSLNL-----ETWDQWNEEPGFIEDVMRFLDNVL 452 Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 I + +++A+ + R++GLG+MGF S L IP A + Sbjct: 453 THFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMEGTLAKSFNLNMFRKLRR 512 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A +ASV LA+ERG D L++ Sbjct: 513 EADAASVALARERGPCP-------------------------------------DALERG 535 Query: 753 VKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 V R S+ +AIAPTA+I+ IC G S +P N+Y +SG +V N L L Sbjct: 536 VMA---RFSHKIAIAPTASISIICGGTSACTEPIPANIYTHKTLSGAISVRNPHLAKVLA 592 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + A + HDGS+ +++ + + K I TAFEID W++E A+ R I Q+Q Sbjct: 593 AKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELAADRAALICQSQ 652 Query: 872 SLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG-VDGKLNAVPVT 929 S+NLYL K L ++ AW G+K+ YY RS+ S+ ++ G + G +A P Sbjct: 653 SINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSK---SISRAAFAGKIAG--DATPTQ 707 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 P T EC CQ Sbjct: 708 QPARQR---------TDYEECLACQ 723 >gi|154269831|ref|XP_001535822.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1] gi|150409470|gb|EDN04916.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1] Length = 524 Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 238/437 (54%), Gaps = 40/437 (9%) Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV +N WTLF P+E L D+YG EFE YE YE++ RG+ + + A LW +L Sbjct: 1 RVEKNGEWTLFCPNEAPGLADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILE 55 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LA 609 ETG+P++ +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L Sbjct: 56 AQTETGNPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFV 115 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 ++D+ KL + VR L+ +ID N + +E+AK+SN HR I G+ G A Sbjct: 116 DPIRGEYDFGKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLA 175 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +P+ SPEA ++ + E I ++AS ELA+ G YS+++GS QG+ D + Sbjct: 176 LRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKVDGPYSTYEGSPVSQGILQYDMWNVT 235 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T WD LK+ + G I G ++ +P N+ Sbjct: 236 P----------TDLWDWDSLKQDIAKHG-----------------ILGFNECFEPYTSNI 268 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + ++G+F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T + Sbjct: 269 YSRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVW 328 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI +++ A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A Sbjct: 329 EISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAA 388 Query: 909 T-----SVEKSTLKGVD 920 + +V++ LK D Sbjct: 389 SAPIQFTVDQEQLKVAD 405 >gi|294013208|ref|YP_003546668.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium japonicum UT26S] gi|292676538|dbj|BAI98056.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium japonicum UT26S] Length = 731 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 204/645 (31%), Positives = 310/645 (48%), Gaps = 101/645 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L P + + +A + A Y+ +S Sbjct: 145 RDALLTDFGKDTLQDRYLL---------PGESYQDLFARVAAAYADDADHAQRVYDYISR 195 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SC+L +V D L GI EN LA GG+G W VR Sbjct: 196 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWGNVR 255 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G + G NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 256 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 314 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R+ +++ + D FM+ V GKEF A + + Q Sbjct: 315 SGDFNRKALNLHHGVLLTDEFMEAVRD-------------------GKEF--ALRSPKDQ 353 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585 + RG ++A AL++K++ + TG P+I F D N P+ H +G+ V +SNLC Sbjct: 354 SVRG------SVNARALFQKLVEVRLATGEPYIVFNDTVNRTMPKHHRDLGLKVSTSNLC 407 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EITL + ++ TAVC L S+NL +++ D+ + +R LDNV I Sbjct: 408 SEITLPTGRDHIGNDRTAVCCLSSLNLETW---DEWKDDR--QFVEDVMRFLDNVLQDYI 462 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK S R++GLG+MGF S L +P+ A + ++ Sbjct: 463 DRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHVNEKVNE 522 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS++LA ERG D GV Sbjct: 523 ASMQLAVERGPCPDAA----DMGV------------------------------------ 542 Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 M +C MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L + Sbjct: 543 -MERFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKA 601 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 A+ + + GS+ +++ + + K + T+FEID WL+E A+ R +IDQAQSLN Sbjct: 602 KDSTAVWNSILEKGGSVQHLDFLSQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLN 661 Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 L++ K L ++ +AW +G+K+ YYLRS+ SV+++ G Sbjct: 662 LFIPADVEKWDLLMLHYRAWELGIKSLYYLRSK---SVQRAGFAG 703 >gi|39996969|ref|NP_952920.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter sulfurreducens PCA] gi|39983857|gb|AAR35247.1| ribonucleoside-diphosphate reductase, putative [Geobacter sulfurreducens PCA] gi|298505986|gb|ADI84709.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent [Geobacter sulfurreducens KN400] Length = 743 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 184/619 (29%), Positives = 296/619 (47%), Gaps = 79/619 (12%) Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFH 350 + +L RY G + E P F RVA +A + +K+A +FY L++SF Sbjct: 19 VTVLEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYELMTSFE 78 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 79 FLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKYTALIHKSGGGTGFSFSRLRPA 138 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T+G S G I F++V + + QGG R+GA L H D+ +F+ + Sbjct: 139 HDVVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCK---- 194 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 DD++ ++ N + + + FM+ V ++A + L +P + L + Sbjct: 195 DDQKHLNNFNISVGLTEAFMEAVERDADYDLINPRDGKPCGTLNAR-------------- 240 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF +I A W+ G P I F D N +P HVGV+ S+N C E L Sbjct: 241 ----KVFSRIVKQA-WK--------NGEPGIIFLDRLNKDNPTPHVGVIESTNPCGEQPL 287 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL N ++D+L +R AV LDNVI++N + + + + Sbjct: 288 LPYES----CNLGSINLGKMVKNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQISEMT 343 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLG+MG+ L LL IPY SP+A+ + ++ M FI+ S ELA RG++ + Sbjct: 344 RANRKIGLGVMGWADMLILLGIPYNSPQAISLGEKVMRFINDEGHVYSRELAAVRGSFPN 403 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F GS++D R S P +RN+ IAPT Sbjct: 404 FAGSIYD----------------------RASEGP------------IRNATVTTIAPTG 429 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDG 829 TI+ I S ++P + +++ + + V VN +QR + E ++ + H G Sbjct: 430 TISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPIFEEVARQRGFYSEELMQKIARH-G 488 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888 +I ++ IP+D++KI TA +I P IE + QK+ D A S + + + + + ++ + Sbjct: 489 TIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNSAAIEDVEKV 548 Query: 889 YRQAWLMGLKTTYYLRSRS 907 YR A+ G K R S Sbjct: 549 YRLAYKSGCKGVTIYRDGS 567 >gi|269958630|ref|YP_003328417.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma centrale str. Israel] gi|269848459|gb|ACZ49103.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma centrale str. Israel] Length = 618 Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 201/645 (31%), Positives = 304/645 (47%), Gaps = 107/645 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G +L DRY L E Q F+RV+ ++ ++ A Y+ +S Sbjct: 33 RDNNLTSFGKAVLSDRYLLDD-----EDYQQLFVRVSQ----YYSDNDEHAQRLYDYMSK 83 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 84 LWFMPATPILSNGGTGRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 143 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + ++GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD+RK Sbjct: 144 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 202 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V Q+ W L SP Sbjct: 203 TGGDPNRKALNIHHGVLLTDEFMRAVEQDKPWDLVSP----------------------- 239 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584 DR I R A LW K+LT ETG P++ F D N P + +G+ V SNL Sbjct: 240 -KDRCVISTVR---ARDLWIKILTTRVETGEPYVVFVDTVNKHKPDIYKELGLEVKMSNL 295 Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST---IRTAVRVLDNV- 635 CTEITL + + TA+C L S+NL YD + + +R LDNV Sbjct: 296 CTEITLATGEDHLGRSRTAICCLASLNLEY--------YDMWSGEPLFVEDVMRFLDNVL 347 Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 I+ IE+A+ + R+IG+G+MGF S L +P+ S A + E I Sbjct: 348 TDFINKAPPEIERARYAAMRERSIGVGVMGFHSFLQSKMVPFESFAASVWNKKIFEHIKR 407 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A S +LA E+G D + N+ R Sbjct: 408 QADEVSRKLAMEKGP------------------------CPDAVDANKMERF-------- 435 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 + ++IAPTA+I+ I G S I+P N++ ++G F V N FL L Sbjct: 436 --------VHKLSIAPTASISIISGNTSPGIEPYAANVFTHKTLTGSFVVRNKFLQKLLA 487 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + L ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QAQ Sbjct: 488 SKGLDNDQVWSSISTNEGSVQHLDFLTEQEKLVFRTAYEMDQRWIVEHSSDRAPYVCQAQ 547 Query: 872 SLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 S+N++L P+G + L I+ AW G+K+ YYLRS+S +K Sbjct: 548 SVNIFL--PAGVHKRYLHKIHFLAWKKGVKSLYYLRSKSVQKADK 590 >gi|206889598|ref|YP_002247982.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741536|gb|ACI20593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] Length = 741 Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 189/641 (29%), Positives = 312/641 (48%), Gaps = 84/641 (13%) Query: 286 KYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-----EKE--K 337 K ++ F +++L RY + +G IE P+ F RVA +A +T EKE + Sbjct: 3 KIKQTFELTDNAIEVLKRRYLKKNEDGILIETPEELFTRVATAIAQIDTIYGKSEKEVYR 62 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 EF+ L++S F+ ++PTL N+GT QLS+CF+ V D + GIF A++ A++ K Sbjct: 63 TKEEFFELMTSLRFLPNSPTLMNAGTPLGQLSACFVLPVEDSMEGIFDAVKYAAIIHKSG 122 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG G ++ +R G + T G S G + F+ V + AV QGG+R+GA L H Sbjct: 123 GGTGFSFSRLRPKGDVVGSTKGISSGPVSFMSVFDSATEAVKQGGRRRGANMGLLRVDHP 182 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ EF+ + DD + + N + + + FMK V + + L +P Sbjct: 183 DILEFITCK----DDLTKFTNFNISVGLTEEFMKAVINDEEYELINP------------- 225 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 R K+ +++ A ++ ++ ++ G P I F D N +P +G Sbjct: 226 ---------RSG-----KIVKRLKAKEVFDLIVHQAWKNGEPGIVFLDRINAANPTPSLG 271 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + ++N C E L CNLGSINL +N D++ L T+ AV LDNVID Sbjct: 272 EIEATNPCGEQPLLPYES----CNLGSINLAKMVKDNSVDWELLKDTVWKAVHFLDNVID 327 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 N + + +++ +R IGLG+MG+ L L IPY S EA+ +A+E M+FI A Sbjct: 328 ANKYPLSLIEQNTKANRKIGLGVMGWADMLIQLKIPYNSKEALNLAEELMKFILHEGRLA 387 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ELA+ERG + ++ S++ +D++ Sbjct: 388 SKELAKERGTFPNYAKSIY-----------------------------YDKMP------- 411 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLW 816 +RN+ IAPT T++ I G S I+P + + ++ M G V VN + E+++ +W Sbjct: 412 LRNATITTIAPTGTLSIIAGCSSGIEPLFALCFARNVMDGTRLVEVNPYFKKEMEKIGIW 471 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +++ +D GSI I+ IP+++KKI TA E+ P I + Q+++D A S + Sbjct: 472 SDSL-ADKIAETGSIQGIKEIPEEIKKIFVTAHEVSPSEHIRMQAAFQQYVDNAVSKTVN 530 Query: 877 L-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914 L ++ + + + +Y A+ +G K T Y SR ++K Sbjct: 531 LPNQATEEDVREVYLLAYRLGCKGVTVYRDGSRHGQVIQKG 571 >gi|240102479|ref|YP_002958788.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA) [Thermococcus gammatolerans EJ3] gi|239910033|gb|ACS32924.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA) [Thermococcus gammatolerans EJ3] Length = 911 Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 232/908 (25%), Positives = 402/908 (44%), Gaps = 133/908 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V G D + N + V R + Sbjct: 5 KVMKRDGRIVPFDRERIRWAIKRAMLEV---GVH-----DDKLLNRVVRRVVRRINELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + HIE+IQD VE LM++G ++ + Y+LYR++++++R K KI+ Sbjct: 57 GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREE------------KKKIL- 103 Query: 150 DDGTLISFNSKRLEMIVEE-ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 N RL+ I + + + L+ ++S+ ++ + +I S R Sbjct: 104 --------NKDRLDEIDKRFSLNALRVLASRYLIRNE-------------KGEIIESPRE 142 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L E+ A + E+ VY K K HE +Y+ + EE Sbjct: 143 LFERVATLAVIPDLLYDER--------VYDKNGK---HEQDLSRVKYYLEHFEE------ 185 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 FD Y K + + FE L + Y R+++ F+ + Sbjct: 186 -------FDGRYSIGRFKLNK-YHFERL-----VNLYRELAEKGRMKVSIDEFLGMLENG 232 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A + E E E++ L++ FM +TP L NSG LS+CF+ + DD+ I A Sbjct: 233 AFDDYESE--VEEYFRLMTGQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAH 290 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + AM+ K GG G +++ +R G + T G + G + F+ + + + + QGG R+GA Sbjct: 291 DVAMIQKSGGGTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 350 Query: 449 CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 LE WH D+E+F+ + KN G + +++ W + F + + + L +P Sbjct: 351 MGILEVWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALRDGKRYPLVNP--- 405 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 R ++ ++I +L+ ++ M + P + F D Sbjct: 406 -------------------RTGEK-----VKEIDPKSLFEELAFMAWSKADPGVIFFDVI 441 Query: 568 NIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYD 619 N R+ + G + ++N C E L E CNL SIN LA F FD+D Sbjct: 442 NRRNVLEPAKGGPIRATNPCGEEPLY----EYESCNLASIN-LAKFVKYDDEGKPYFDWD 496 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + A I+ + LDN ID+N + + + R IG+G+MG AL L IPY S E Sbjct: 497 EYAYVIQKVAKYLDNAIDVNRFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEG 556 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ E+++F+A SVE A++RG + ++ S + G P++ Sbjct: 557 FAFMRKATEYLTFYAYKYSVEAAKKRGTFPLYEKSRYKDGELPVEG----------FYHR 606 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 LPWDEL + +K G+RN PT +++ I S I+P + +Y KS G+F Sbjct: 607 EIWNLPWDELVEEIKKHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 666 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V+ ELK+R LW + ++ + + GS+ +E IP+D++++ T+ ++ + I + Sbjct: 667 YYVDPVFEAELKKRGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILA 726 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKS 914 + Q W+ + S + + ++ + + + Y A+ +G K R S + SVE Sbjct: 727 QANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGE 786 Query: 915 TLKGVDGK 922 K V K Sbjct: 787 KRKRVPAK 794 >gi|329888547|ref|ZP_08267145.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas diminuta ATCC 11568] gi|328847103|gb|EGF96665.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas diminuta ATCC 11568] Length = 599 Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 220/689 (31%), Positives = 323/689 (46%), Gaps = 108/689 (15%) Query: 283 NDLKYER--DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 N LK +R D G + L DRY L E Q F RVA A + A Sbjct: 2 NGLKLDRTRDALLTEFGKKTLEDRYLLAG-----ESYQDMFARVATAYA----DDADHAQ 52 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 Y+ +S FM +TP L N G SCFL +V D L GI EN LA GG+ Sbjct: 53 RVYDYMSKLWFMPATPVLSNGGADRGLPISCFLNSVNDSLDGIQNVWNENVSLASNGGGI 112 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G W VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++E Sbjct: 113 GTYWGGVRSIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIE 171 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL++RK +GD RR+ +++ I D FM+ V + L SP Sbjct: 172 EFLEIRKPSGDFNRRSLNLHHGINITDAFMEAVRDGKPFDLISPKN-------------- 217 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV 578 GE++ + + A LW K+L + +TG P++ F D N + PQ +G+ Sbjct: 218 -----------GEVR--KTVDARNLWTKILEIRMQTGEPYLIFSDTVNRQMPQHQKDLGL 264 Query: 579 -VHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 V SNLC+EI L++ E TAVC L S+N A ++ + I +R L Sbjct: 265 SVKQSNLCSEIMLHTGLDHKGVERTAVCCLSSVN-----AETFLEWREEPRFIEDIMRFL 319 Query: 633 DNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV++ ++ A S R++GLGLMGF S L + + S A + Sbjct: 320 DNVLEDFITRAPSSMAAAVYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFK 379 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + A AS LA+E+G D+GV Sbjct: 380 HLRREADKASRTLAEEKGPCPDAA----DRGVME-------------------------- 409 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 R S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L Sbjct: 410 ----------RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLQ 459 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + L ++ + EA+ S + ++GS+ +++ + DD K I+ TAFE+D W+IE A+ R I Sbjct: 460 DLLGEKGIDTEAVWSSILENEGSVQHLDALSDDEKAIYKTAFELDQRWVIELAADRTGDI 519 Query: 868 DQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 QAQSLNL++ K L ++ AW GLK+ YYLRS+ SV+++ G + K Sbjct: 520 CQAQSLNLFIPGDVNKWDLHMLHWSAWERGLKSLYYLRSK---SVQRAAFAGAEDKKEE- 575 Query: 927 PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 DPN + S +D EC CQ Sbjct: 576 -EIDPNQPD----LFSIARTDYDECLACQ 599 >gi|111073617|emb|CAL29480.1| ribonucleoside-diphosphate reductase alpha chain [Wolbachia endosymbiont of Onchocerca volvulus] Length = 609 Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 197/646 (30%), Positives = 309/646 (47%), Gaps = 101/646 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + +E++ G +L DRY + E Q F+R+A ++ ++ A Y+ Sbjct: 21 INHEKNVKLTSFGKAVLLDRYLI-----ENESYQDLFIRIASYY----SDNKEHAQRLYD 71 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM STP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 72 YISNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G+ GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 132 GNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 190 Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ A + D FM+ V ++ W L SP + Sbjct: 191 IRKPTGGDPNRKALNIHHAVIVNDEFMQAVERDLEWDLISP-----------------HS 233 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580 N KV + A +W K+L ETG P+I F + N P+ + + + Sbjct: 234 N----------KVISTVKARDIWVKILIARVETGEPYIIFLNAINNNKPESYKKLNLDIK 283 Query: 581 SSNLCTEITLNSSSE-----ETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633 SNLC+EITL + + TAVC L S+NL + +++F I +R LD Sbjct: 284 MSNLCSEITLTTGYDHLNKPRTAVCCLSSVNLEYYEEWKDSEF-------FIEDIMRFLD 336 Query: 634 NV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 NV I+ + I++AK S R+IGLG+MGF S L +P+ S A + + Sbjct: 337 NVFEDFINKAPNEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKRIFKH 396 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A S +LA+E+GA D +N R Sbjct: 397 LREQADIISKKLAEEKGA------------------------CLDAKEINLMERF----- 427 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 ++ +AIAPTA+I+ I G S I+P N++ + ++G F V N FL Sbjct: 428 -----------THKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQK 476 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L +++ ++ + S + ++GS+ +++ + + K TA+E+D W+IE AS R +I Sbjct: 477 LLAKKNQDNDKVWSSISTNEGSVQHLDFLNEHEKLTFKTAYELDQRWIIEHASDRTPYIC 536 Query: 869 QAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 Q+QS+NL+L K+ L I+ AW LK+ YY RS S +K Sbjct: 537 QSQSVNLFLPPNIHKRYLHKIHMLAWKKNLKSLYYCRSLSIQRADK 582 >gi|167957457|ref|ZP_02544531.1| ribonucleotide-diphosphate reductase subunit alpha [candidate division TM7 single-cell isolate TM7c] Length = 296 Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/297 (44%), Positives = 192/297 (64%), Gaps = 3/297 (1%) Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD N+R+ + G +H SNLCTEITL + AVCNL SINL H N++D+ +L Sbjct: 1 WKDTINVRALNNNTGTIHLSNLCTEITLPQDKDNIAVCNLVSINLSRHLNGNEWDWRRLE 60 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++R+A+R LDN+IDI ++ +A +N RA+GLG+MGF L L + Y S E+ E+ Sbjct: 61 DSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFTDVLERLRLAYDSEESYEL 120 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741 D+ EFIS+HA+ S LAQE G+Y +F+GS W +G+ PID+I +L + RD ++ ++R Sbjct: 121 IDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPIDTIDILEKNRDIDVKISRN 180 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S L W +L+ +VK GMRN+ MAIAPTA I +I G + +DP + ++ +S ++G F Sbjct: 181 SSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLDPRFTQIFSRSTLNGKFLE 239 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 VN LV ELK R LW E +L + G I NIE IPD++K ++ T+F+I P IE Sbjct: 240 VNPNLVRELKDRSLWSEVK-DELLINQGDIQNIEAIPDEIKSVYKTSFQILPYAFIE 295 >gi|16127722|ref|NP_422286.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter crescentus CB15] gi|13425218|gb|AAK25454.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter crescentus CB15] Length = 619 Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 208/680 (30%), Positives = 315/680 (46%), Gaps = 108/680 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RV+ A + A Y+ +S Sbjct: 34 RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVYDYMSR 84 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL V D L GI G EN LA GG+G W VR Sbjct: 85 LWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYWGGVR 144 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 145 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 203 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM V + L SP Sbjct: 204 SGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTN--------------------- 242 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 +V R++ A ALW+K+L + +TG P++ F D N P Q+ +G+ V SNLC Sbjct: 243 ------EVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQSNLC 296 Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EI L++ + E TAVC L S+N A ++ + I +R LDNV I Sbjct: 297 SEIMLHTGTDHLGQERTAVCCLSSVN-----AETYLEWRDHPTFIEDVMRFLDNVLQDFI 351 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D A + R++GLGLMGF S L ++P+ S A + + A Sbjct: 352 DRAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 411 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS++L +E+G + D +M R Sbjct: 412 ASIKLGEEKGP---------------------CPDAADRGSMERF--------------- 435 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L L+++ Sbjct: 436 ----SHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQ 491 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +A+ + ++GS+ +++ + D K ++ TAFE+D W+IE A+ R I Q+QS+N+ Sbjct: 492 NTDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNV 551 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L K L ++ AW G+K+ YYLRS+ SV+++ G + K A + Sbjct: 552 FLPGDVDKWDLHMLHWMAWERGVKSLYYLRSK---SVQRAAYAGAEDKAEA--------A 600 Query: 935 THSLGIPSSCTSDTECEVCQ 954 +P D EC CQ Sbjct: 601 AGGFDVPEKTDYD-ECLACQ 619 >gi|167648616|ref|YP_001686279.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter sp. K31] gi|167351046|gb|ABZ73781.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter sp. K31] Length = 616 Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 211/680 (31%), Positives = 318/680 (46%), Gaps = 108/680 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RV+ A + A Y+ +S Sbjct: 31 RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVYDYMSK 81 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM STP L N G SCFL V D L GI G EN LA GG+G W VR Sbjct: 82 LWFMPSTPVLSNGGAERGLPISCFLNAVSDSLDGILGVWNENVWLAANGGGIGTYWGGVR 141 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G G++ G+IPF++V + +A++QG R+G+ YL+ +H ++EEFL++RK Sbjct: 142 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIFHPEIEEFLEIRKA 200 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM V + L SP Sbjct: 201 SGDFNRKSLNLHHGISITDEFMHAVRDGHKFGLRSPKT---------------------- 238 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 GE V R++ A ALW+K+L + +TG P++ F D N P QQ +G+ V SNLC Sbjct: 239 ---GE--VLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPKHQQELGLKVRQSNLC 293 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EI L++ ++ TAVC L S+N A ++ I +R LDNV I Sbjct: 294 SEIMLHTGVDHLGNDRTAVCCLSSVN-----AETFLEWRDHPMFIEDIMRFLDNVLQDFI 348 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D A + R++GLGLMGF S L ++P+ S A + + A Sbjct: 349 DRAPDAAATAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 408 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ + +E+G + D +M R Sbjct: 409 ASITIGEEKGP---------------------CPDAADRGSMERF--------------- 432 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L L+++ Sbjct: 433 ----SHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKVLEEKGH 488 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +A+ + ++GS+ +++ + D K ++ TAFE+D W++E A+ R + Q+QS+N+ Sbjct: 489 NTDAVWGSILENEGSVQHLDFLSQDDKDVYKTAFELDQRWVVELAADRTPEVCQSQSVNI 548 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L K L ++ QAW G+K+ YYLRS+ SV++++ G D V + P Sbjct: 549 FLPGDVDKWDLHMLHWQAWERGVKSLYYLRSK---SVQRASYAGSD-----VALAGP--- 597 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + PS T EC CQ Sbjct: 598 ANGFDAPSK-TDYEECLACQ 616 >gi|221236543|ref|YP_002518980.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter crescentus NA1000] gi|220965716|gb|ACL97072.1| ribonucleoside-diphosphate reductase alpha chain [Caulobacter crescentus NA1000] Length = 627 Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 208/680 (30%), Positives = 315/680 (46%), Gaps = 108/680 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RV+ A + A Y+ +S Sbjct: 42 RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVYDYMSR 92 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL V D L GI G EN LA GG+G W VR Sbjct: 93 LWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYWGGVR 152 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 153 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 211 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM V + L SP Sbjct: 212 SGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTN--------------------- 250 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 +V R++ A ALW+K+L + +TG P++ F D N P Q+ +G+ V SNLC Sbjct: 251 ------EVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQSNLC 304 Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +EI L++ + E TAVC L S+N A ++ + I +R LDNV I Sbjct: 305 SEIMLHTGTDHLGQERTAVCCLSSVN-----AETYLEWRDHPTFIEDVMRFLDNVLQDFI 359 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D A + R++GLGLMGF S L ++P+ S A + + A Sbjct: 360 DRAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 419 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS++L +E+G + D +M R Sbjct: 420 ASIKLGEEKGP---------------------CPDAADRGSMERF--------------- 443 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L L+++ Sbjct: 444 ----SHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQ 499 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +A+ + ++GS+ +++ + D K ++ TAFE+D W+IE A+ R I Q+QS+N+ Sbjct: 500 NTDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNV 559 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L K L ++ AW G+K+ YYLRS+ SV+++ G + K A + Sbjct: 560 FLPGDVDKWDLHMLHWMAWERGVKSLYYLRSK---SVQRAAYAGAEDKAEA--------A 608 Query: 935 THSLGIPSSCTSDTECEVCQ 954 +P D EC CQ Sbjct: 609 AGGFDVPEKTDYD-ECLACQ 627 >gi|11499254|ref|NP_070492.1| ribonucleotide-diphosphate reductase subunit alpha [Archaeoglobus fulgidus DSM 4304] gi|2648891|gb|AAB89584.1| ribonucleotide reductase (nrd) [Archaeoglobus fulgidus DSM 4304] Length = 752 Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 187/616 (30%), Positives = 300/616 (48%), Gaps = 79/616 (12%) Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCS 354 +L RY L + G+ IE P+ RVA +A E E+ A +F+ LL FM + Sbjct: 10 VLRKRYLLKDDEGNVIETPEEMCWRVARAIAKAEENYGNNAEEWAEKFFKLLWEQKFMPN 69 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+GT QLS+CF+ V D + GIF AL + A + K GG G ++ +R G + Sbjct: 70 SPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFSRLRPKGDIV 129 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + + QGG+R+GA L H D+EEF+ + G R Sbjct: 130 KSTMGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLNVHHPDIEEFIKAKWEEGVLR- 188 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + N + D FM+ + ++ + L +P GE Sbjct: 189 ---NFNISVAATDAFMEALKKDDDYDLINPRT-------------------------GE- 219 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 V R++ A ++ ++ + G P + F D N +P HVG + ++N C E L Sbjct: 220 -VVRRVPARKIFNLIVEGAWRNGEPGMIFIDTINRFNPTPHVGQIEATNPCGEQPLLPYE 278 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGSINL + + D+D L + AVR LD+VID+N + I + ++ +R Sbjct: 279 S----CNLGSINLAKFVKDGEIDWDGLREVVWIAVRFLDDVIDVNSYPIPEIEQMTKANR 334 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MG+ L LL+IPY S EA+++A++ M+FI + AS +LA+ERG + ++KGS Sbjct: 335 KIGLGVMGWADMLFLLNIPYDSDEAIQLAEKVMKFIQEESHRASQQLAEERGVFPNWKGS 394 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +W++ K I MRN+ IAPT TI+ Sbjct: 395 VWEK-----------------------------------KGIKMRNATTTTIAPTGTISI 419 Query: 775 ICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I G S I+P + Y ++N+ +F +N L++R L+ + +I + GSI Sbjct: 420 IAGCSSGIEPIFALAYKRTNILDGEEFFEINEIFEEVLRRRGLYTDELIEKVA-EKGSIQ 478 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQ 891 IE IP+D++++ A +I P W + + QK+ D A S + + + +K ++ + Sbjct: 479 EIEEIPEDIRRVFKCALDISPEWHVRMQAAFQKYTDNAVSKTINMPNSATRKDVEKAFLL 538 Query: 892 AWLMGLKTTYYLRSRS 907 A+ +G K R S Sbjct: 539 AYELGCKGITVYRDGS 554 >gi|315425463|dbj|BAJ47126.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus Caldiarchaeum subterraneum] Length = 834 Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 179/628 (28%), Positives = 298/628 (47%), Gaps = 67/628 (10%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +Y+L+ F+ ++PTLFN+GT QLS+CF+ V DD+ I +E A++ K GG+G Sbjct: 233 YYDLMVGKRFLPNSPTLFNAGTVLGQLSACFVLDVEDDISSIMRTAEEAAVIFKTGGGVG 292 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 +++ +R G + T G + G + F+++ + V QGG+R+GA L H D+++ Sbjct: 293 INYSKLRPEGDVVSSTGGVASGPVSFMRIVDTVTDVVKQGGRRRGANIGILNINHPDIDK 352 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G + N + + F K ++ + L +P + S Sbjct: 353 FISAKQRPG----FLENFNISVMVTADFWKHYEEDRPYPLVNPRDGS------------- 395 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVH 580 V+R + L R++ ++T P + + D N +P ++ G ++ Sbjct: 396 --------------VWRLVDTRKLLRQIAENAWKTADPGLLYHDNINELNPLREAYGDIY 441 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 N C E L CNLGSINL A + + D+D L + AVR LDNV+D+ Sbjct: 442 CVNPCGEQPLYPHES----CNLGSINLHAFVKDGRLDWDALGKCVEDAVRFLDNVVDLTK 497 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 H E +K R IGLG+MG L+ L IPY+S E E+ ME+I++ A+ SVE Sbjct: 498 HPTEAIEKMTLRTRRIGLGIMGLADMLYALRIPYSSEEGFEMMRRVMEYIAYKAVETSVE 557 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERG + F S W +G P L R ++ W L + VK G+RN Sbjct: 558 LAEERGPFPDFPRSSWARGELPFRG----------LREGRELKMYWSRLVEHVKK-GIRN 606 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 S+ + +APT +I+ + S ++P + +Y K +G F + L++ L + + Sbjct: 607 SHLLTVAPTGSISMLADTSSGLEPQFALVYRKQVTAGVFYYSDPVFEKALEEYGLPKQEI 666 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDE 879 + + + GS+ I+ IP+DL+++ TA +I P W + + QKW+D + S + + Sbjct: 667 VRRVAENGGSVQGIQEIPEDLRRVFVTALDI-PWWDHLRAQHEIQKWVDASVSKTINM-- 723 Query: 880 PSGKKLDFIYR---QAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 PS +D + + A +GLK T Y S+SA + T + +L+ + + Sbjct: 724 PSWVTVDDVLKAFIAAHRLGLKGVTVYRDGSKSAQVLVTPTQRNRRYELSV--INNTPEL 781 Query: 935 THSLGI---------PSSCTSDTECEVC 953 LGI P T C VC Sbjct: 782 LRGLGIEVEEKIAETPPPAIIHTTCPVC 809 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Query: 41 FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQD 100 FD +I AI KA A++ + + +++ + + +L + I H+E+IQD Sbjct: 3 FDAERIRGAIRKAM-------AAKQVMDEKVLEKVVASVLEQLSSRFGAEKIPHVEEIQD 55 Query: 101 QVECSLMQSGHHKITREYVLYREERSDVR 129 VE +LM+ G ++ + Y+LYR ER+ +R Sbjct: 56 IVESALMEHGLKEVAKAYILYRHERTRIR 84 >gi|254796776|ref|YP_003081612.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia risticii str. Illinois] gi|254589966|gb|ACT69328.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia risticii str. Illinois] Length = 608 Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 205/664 (30%), Positives = 312/664 (46%), Gaps = 103/664 (15%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + RD G +L DRY NG E Q F RVA ++ + A Y+ + Sbjct: 24 HARDSFLTDFGKAVLKDRYLQ--NG---EDYQGLFARVAQYY----SDDPEHACRLYDYM 74 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S+ FM +TP L N GT SCFL D L GI G EN LA + GG+G+ W Sbjct: 75 SNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWGN 134 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +G + +GK+ G+IPF+ V N +A++QG R+G+ YL H ++ EF+DLR Sbjct: 135 LRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIVEFIDLR 193 Query: 467 KNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 K TG D R+ +++ A I D FMK V ++ W L SP + S Sbjct: 194 KPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKDGS----------------- 236 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSS 582 V + A +W ++LT ETG P+I F D P + +G+ V S Sbjct: 237 ----------VIATVGARGIWIRILTARLETGEPYILFIDTVQKLRPDVYKTLGLEVKMS 286 Query: 583 NLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFD-YDKLASTIRTAVRVLDNVI 636 NLC+EITL + + TA+C L S+NL +FD ++ IR + LDNV+ Sbjct: 287 NLCSEITLTTGKDHLDNHRTAICCLSSLNL------EKFDEWEHDEQFIRDVMHFLDNVL 340 Query: 637 D------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 + +C + +A+ S R+IGLG+MGF S L IP+ S A + + + I Sbjct: 341 EDFIRKAPDC--MHRARYSAMRERSIGLGVMGFHSFLQSRSIPFESAIAKSVNLKIFKKI 398 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A S E+A ERG +D + + R Sbjct: 399 KHEADKISKEMALERGP------------------------CKDAVDCDMMERF------ 428 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + MAIAPTA+I+ I G S I+P N++ + +SG F V N L Sbjct: 429 ----------VHKMAIAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFIVKNKHLAAL 478 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+++ + + S + ++GS+ +++ + ++ K + TA+E+D W+IE A+ R +I Q Sbjct: 479 LERKGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWIIELAADRTPYICQ 538 Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 +QS+NL+L KK L ++ W GLK+ YY RS+S K + + PV Sbjct: 539 SQSVNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQRTYKISQEYKHKSDTPSPV 598 Query: 929 TDPN 932 +P+ Sbjct: 599 GEPD 602 >gi|125541523|gb|EAY87918.1| hypothetical protein OsI_09340 [Oryza sativa Indica Group] Length = 676 Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 147/390 (37%), Positives = 220/390 (56%), Gaps = 24/390 (6%) Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +V + +Y G++ S L ++ + P+YA + AR + L +K Sbjct: 38 LVAQKVCAGVYKGVTTSQLGELAAETAAAMTASHPDYASLAARIAISNL--------HKT 89 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296 K+ ++ +Y Y R G+ A L+ + + + + L +++ Y+RDF ++Y Sbjct: 90 TMKSFSETIKVMYMHYDER---SGLLAPLIADDVYEIIMKNTTRLDSEIIYDRDFDYDYF 146 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G + L Y L + G +E PQ MRV++G+ + E A++ Y+++S F ++P Sbjct: 147 GFKTLERSYLLKVVGKVVERPQHMLMRVSIGIHKDDIES---AIKTYHMMSQRWFTHASP 203 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 TLFN+GT PQLSSCFL + DD + GI+ L E A ++K +GG+G +R G++I Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLSECATISKCAGGIGLSIHNIRATGSYIR 263 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEN 323 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A WIPDLFM+RV N W+LF P+E L D +G EF+ Y+ YER+ Sbjct: 324 RARDLFYALWIPDLFMERVQNNENWSLFCPNEAPGLADCWGDEFQNLYKKYEREG----- 378 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFK 564 K + +SA ALW +L ETG P++ +K Sbjct: 379 KAKKVVSAQALWFDILKAQIETGTPYMLYK 408 Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 141/245 (57%), Gaps = 11/245 (4%) Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY +A ++ + E I +HA+ AS E+A + G Y ++ GS +G+ D ++ Sbjct: 403 PYMLYKAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP-- 460 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + R W +L++ + +G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 461 --------SDRWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSR 512 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+F VVN L+++L + +W + + + Y DGS+ I IPDDLK I+ T +EI Sbjct: 513 RVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIK 572 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT YYLR+R+A Sbjct: 573 QKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADA 632 Query: 912 EKSTL 916 K T+ Sbjct: 633 IKFTV 637 >gi|95930217|ref|ZP_01312955.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans DSM 684] gi|95133680|gb|EAT15341.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans DSM 684] Length = 738 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 185/624 (29%), Positives = 298/624 (47%), Gaps = 85/624 (13%) Query: 298 LQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFH 350 L +L RY R +E P F RVA +A E + +K+A EFY+++++ Sbjct: 17 LTVLERRYLKRDEKGRALETPANMFERVANAIAEAEKKFDKKADTKKVAAEFYDMITNLE 76 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 77 FLPNSPTLMNAGRELGQLSACFVLPVADSMESIFEAIKNTALIHKSGGGTGFSFSRIRPA 136 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F+KV + + QGG R+GA L H D+ +F+ ++ Sbjct: 137 NDVVLSTKGVSSGPLSFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCKR--- 193 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP--DEVSDLHDLYGKEFEIAYENYERQ 528 D+ + N + + + FM+ V + + + +P EV D Sbjct: 194 -DQTVLTNFNISVGLTEEFMEAVKTDGEYDIINPRTGEVCD------------------- 233 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 K+SA ++ ++ + + G P I F D N +P H+G + S+N C E Sbjct: 234 ----------KMSAAKVFDHIVDLAWNNGEPGIIFLDRLNRDNPTPHIGEIESTNPCGEQ 283 Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 L CNLGSINL + Q D+DKL T++ +VR LDNVI++N + I + + Sbjct: 284 PLLPYES----CNLGSINLNRMVKDGQVDWDKLRKTVQKSVRFLDNVIEVNNYPIPEITE 339 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 + +R IGLG+MG+ L + I Y EA E+A + M+FI+ A AS +LA+ERGA+ Sbjct: 340 MSLANRKIGLGIMGWADMLIRVGISYCDQEAAELAAKLMKFINDEAHQASRDLAKERGAF 399 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F+GS+++Q P +RN+ C IAP Sbjct: 400 PNFEGSIFEQRQEP----------------------------------KIRNATCTTIAP 425 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827 T TI+ I S I+P + YV+ M D V VN K+R + ++ L Sbjct: 426 TGTISIIANSSSGIEPLFAVSYVRQVMDNDILVEVNPLFEEVAKERGFYSPELMK-LIAE 484 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886 G+I + ++IP+D++++ TA +I P I S QK+ D A S + + + + + Sbjct: 485 KGTIQDFDQIPEDVRRVFVTAHDITPEEHIRMQSAFQKYTDNAVSKTVNFCNSANRDDVA 544 Query: 887 FIYRQAWLMGLK--TTYYLRSRSA 908 +Y+ A+ G K T Y SR A Sbjct: 545 QVYQMAYESGCKGVTIYRDGSRDA 568 >gi|254418479|ref|ZP_05032203.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas sp. BAL3] gi|196184656|gb|EDX79632.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas sp. BAL3] Length = 629 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 209/680 (30%), Positives = 317/680 (46%), Gaps = 104/680 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G + L DRY L E Q F RV+ ++ A Y+ +S Sbjct: 40 RDALLTDFGKKTLEDRYLLAG-----ESYQDMFARVSTAF----SDDADHAQRLYDYMSR 90 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL V D L GI EN LA GG+G W VR Sbjct: 91 LWFMPATPVLSNGGADRGLPISCFLNAVGDSLDGIQSVWNENVALASNGGGIGTYWGGVR 150 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G GK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 151 SIGEKVKGA-GKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 209 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ + D FM+ V A + L SP + + Sbjct: 210 SGDFNRKSLNLHHGVNVTDEFMEAVKTGATFDLKSPKDGA-------------------- 249 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLC 585 V + + A +LW K+L + +TG P++ F D N + Q+ +G+ V SNLC Sbjct: 250 -------VIKTVDARSLWTKLLDIRMQTGEPYMIFSDTVNRQMAPHQRDLGLKVKQSNLC 302 Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 EI L++ + TAVC L S+N A ++ + I +R LDNV++ Sbjct: 303 AEIMLHTGRDHLGVDRTAVCCLSSVN-----AETFLEWREEPRFIEDIMRFLDNVLEDFI 357 Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 ++ A S R++GLGLMGF S L + + S A + + A Sbjct: 358 RRAPPEMKAAVYSAKRERSVGLGLMGFHSFLQGQGVAFESAMAKSWNMRLFKHLRREADK 417 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA+E+G L + + Sbjct: 418 ASRLLAEEKGPC----------------------------------------LDAEERGV 437 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ + Sbjct: 438 MERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLDEKGI 497 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 EA+ + + H+GS+ +++ + +D K I+ TAFE+D W++E A+ R I QAQSLNL Sbjct: 498 NTEAVWNSILEHEGSVQHLDALNEDEKGIYKTAFELDQRWVVELAADRAPEICQAQSLNL 557 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 ++ K L ++ AW G+K+ YYLRS+ SV+++ G + K A V DPN Sbjct: 558 FIPGDVNKWDLHMLHWSAWERGVKSLYYLRSK---SVQRAAFAGAEDKAEA--VIDPNQP 612 Query: 935 THSLGIPSSCTSDTECEVCQ 954 +P T EC CQ Sbjct: 613 D-LFSMPK--TDYDECLACQ 629 >gi|197103807|ref|YP_002129184.1| ribonucleoside-diphosphate reductase, alpha subunit [Phenylobacterium zucineum HLK1] gi|196477227|gb|ACG76755.1| ribonucleoside-diphosphate reductase, alpha subunit [Phenylobacterium zucineum HLK1] Length = 619 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 203/633 (32%), Positives = 301/633 (47%), Gaps = 96/633 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD G L DRY L E Q F RVA A + A Y+ +S+ Sbjct: 37 RDANLTDFGKTTLEDRYLLPG-----ESYQDMFARVATAFA----DDADHAQRIYDYISN 87 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N G SCFL VPD+L GI EN LA GG+G W VR Sbjct: 88 LWFMPATPVLSNGGASRGLPISCFLNAVPDNLDGIVSVWNENVALASNGGGIGTYWGGVR 147 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++RK Sbjct: 148 SIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 206 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 +GD R++ +++ I D FM+ V A + L SP Sbjct: 207 SGDFNRKSLNLHHGLSITDEFMEAVRDGAMFGLRSPKT---------------------- 244 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585 GE V R++ A +LW+K+L + +TG P++ F D N P Q+ +G+ V SNLC Sbjct: 245 ---GE--VIREVDARSLWQKILEIRLQTGEPYLIFSDTVNRAMPQHQRELGLQVRQSNLC 299 Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +EI L++ E TAVC L S+N A ++ + I +R LDNV++ Sbjct: 300 SEIMLHTGQDHLGQERTAVCCLSSVN-----AEKFLEWRDHPTFIEDVMRFLDNVLEDFI 354 Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 H ++ A + R++GLGLMGF S L ++P+ S A + + + Sbjct: 355 HRAPPEMKNAVYAAKRERSVGLGLMGFHSFLQQQNVPFESALAKSWNMRLFKTLRRQCDA 414 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA ERG P + +R + Sbjct: 415 ASRTLAAERG--------------------------------------PCPDAAER--GV 434 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R S+ +AIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ Sbjct: 435 MERFSHKLAIAPTASISIICGGTSAGIEPIPANIYSHKTLSGTFAVKNPYLERLLDEKGQ 494 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 A+ + ++GS+ ++E + D K + TAFEID W++E A+ R I Q+QS+NL Sbjct: 495 NTAAVWDSILANEGSVQHLEFLSQDEKDVFKTAFEIDQRWIVELAADRTPDICQSQSVNL 554 Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907 +L K L ++ AW G K+ YYLRS+S Sbjct: 555 FLPGDIDKWDLHMLHWTAWERGCKSLYYLRSKS 587 >gi|326782197|ref|YP_004322598.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] gi|310004404|gb|ADO98797.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] Length = 766 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 198/671 (29%), Positives = 315/671 (46%), Gaps = 47/671 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G S N +++ +VE AC GL VS+ V + +DG+ S ++ L+ Sbjct: 5 ITVIKRNGDKDSLNLEKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIETSQIQEILVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY V +R LL LR+++ H+E ++ + + Sbjct: 65 SASDLISLETPNYQYVASRLLLFDLRKQL----------NDHYEDHPFILDHVKKCADLD 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 V + + E + + + + + Y RD+ F Y G++ + D+Y + +G E PQ + Sbjct: 115 VYDKTIIEKYTEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + +A L ++ KE R +YN +S TP + +G R P Q +SC L V Sbjct: 175 IMIATTL-FQQYPKETRLDYVRRYYNAISKHKINIPTPVM--AGVRTPLRQFASCVLVDV 231 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L IF + G+G + +RG+ + I G + GVIPFLK T Sbjct: 232 DDTLDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVR 291 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF R QN Sbjct: 292 CCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMQN 351 Query: 497 AGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554 +LFSP +V L+D +G EF+ YE YE + V RK I A L+ +L Sbjct: 352 KDISLFSPHDVPRLYDAFGMPEFDALYEQYE-----ADDSVPRKTIPARELFNSLLKERS 406 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSIN 606 ETG +I D CN S + V+ SNLC EITL + E A+C L +IN Sbjct: 407 ETGRIYIMNIDHCN--SHSSFLDKVNMSNLCQEITLPTDPINHIDDEGGEIALCILSAIN 464 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + D++ AVR L+ +ID + ++ AK+S R++G+G +G Sbjct: 465 V-----GKITQLDQMDELCDLAVRALEELIDYMQYPVDAAKRSTLARRSLGIGYIGLAHY 519 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L + Y PEA ++ + E +H + AS ELA+ERGA F+ + + GV PID+ Sbjct: 520 LAKNGVKYDDPEAWKLVHDLTESFQYHLLKASNELAKERGACEGFRHTKYSNGVLPIDTY 579 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 EV DEL N+ + W L+ + G+R+S A P+ + + + + I+P Sbjct: 580 K--KEV-DELVENKLN-YDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPR 635 Query: 787 QNLYVKSNMSG 797 L VK + G Sbjct: 636 DFLSVKKSKKG 646 >gi|88608409|ref|YP_506298.1| ribonucleotide-diphosphate reductase subunit alpha [Neorickettsia sennetsu str. Miyayama] gi|88600578|gb|ABD46046.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia sennetsu str. Miyayama] Length = 605 Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 200/639 (31%), Positives = 304/639 (47%), Gaps = 103/639 (16%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + RD G +L DRY NG E Q F RVA ++ K A Y+ + Sbjct: 21 HARDSFLTDFGKAVLKDRYLQ--NG---EDYQGLFARVAKYY----SDDPKHACRLYDYM 71 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S+ FM +TP L N GT SCFL D L GI G EN LA + GG+G+ W Sbjct: 72 SNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWGN 131 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +G + +GK+ G+IPF+ V N +A++QG R+G+ YL H ++ EF+DLR Sbjct: 132 LRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIIEFIDLR 190 Query: 467 KNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 K TG D R+ +++ A I D FMK V ++ W L SP + S Sbjct: 191 KPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKDGS----------------- 233 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSS 582 V + A +W ++LT ETG P+I F D P + + V S Sbjct: 234 ----------VIATVGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMS 283 Query: 583 NLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFD-YDKLASTIRTAVRVLDNVI 636 NLC+EITL + + TA+C L S+NL +FD ++ +R + LDNV+ Sbjct: 284 NLCSEITLTTGKDHLDNHRTAICCLSSLNL------EKFDEWEHNEQFVRDVMHFLDNVL 337 Query: 637 D------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 + +C + +A+ S R+IGLG+MGF S L IP+ S A + + + I Sbjct: 338 EDFIRKAPDC--MHRARYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFKKI 395 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A S E+A ERG D++ D ++ Sbjct: 396 KHEADKISKEMALERGPCK--------------DAVDC------------------DTME 423 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V I A+APTA+I+ I G S I+P N++ + +SG F V N L Sbjct: 424 RFVHKI--------AVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAAL 475 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+++ + + S + ++GS+ +++ + ++ K + TA+E+D W+IE A+ R +I Q Sbjct: 476 LERKGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQ 535 Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 +QS+NL+L KK L ++ W GLK+ YY RS+S Sbjct: 536 SQSVNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKS 574 >gi|170289761|ref|YP_001736577.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Korarchaeum cryptofilum OPF8] gi|170173841|gb|ACB06894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Korarchaeum cryptofilum OPF8] Length = 876 Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 178/587 (30%), Positives = 290/587 (49%), Gaps = 61/587 (10%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 K +E+Y L+ F+ ++PTLFN+GT QLS+CF+ + D L I + E AM+ K Sbjct: 246 KDFLEYYRLMVDLKFIPNSPTLFNAGTMLGQLSACFVLPIEDSLESIMRSATEAAMIFKS 305 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+G +++ +R G + T G++ G + F+++ + V QGG+R+GA LE WH Sbjct: 306 GGGVGINYSKLRPQGDIVRSTGGQASGPVSFMRIIDVITDVVKQGGRRRGANMGILEIWH 365 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ +F++ + G+ + N + I + F K + + L +P Sbjct: 366 PDIMKFIEAKAKPGN----LENFNLSVMITEDFWKYYEEGKDYPLINP------------ 409 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQH 575 N E + FRKI+ +A WR TG P + F D N R+ ++H Sbjct: 410 ------RNGEVWGSIDPREAFRKIAEMA-WR--------TGDPGVLFADNINRRNILREH 454 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRV 631 +G + S+N C E L CNLGS+NL A+ FD+D+ + IR A+R Sbjct: 455 LGEIKSTNPCGEEPLYPYES----CNLGSMNLYAYIRRENGLVTFDWDEYSRDIRKALRF 510 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDN+ID+N I + +K+ R +GLGLMG L L IPY S E + E+++ Sbjct: 511 LDNIIDVNKFPIPEIEKTTKRTRKVGLGLMGLADTLFALRIPYNSEEGFNFMRRAAEYLT 570 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + A+ SVE A+ERG++ F S + +G P++ L WD L++ Sbjct: 571 YFAMLESVERAKERGSFPLFPESGYVRGEMPVEG----------FYHPEIWNLDWDYLRE 620 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++ G+RN+ IAPT +I+ I VS I+P + ++ K G F V++ +LK Sbjct: 621 QIMRNGIRNAEVTTIAPTGSISMIAEVSSGIEPQFALVFEKRVTVGSFFYVDAEFERQLK 680 Query: 812 QRDLWDEAMISDLKYHDGSIGNIER------IPDDLKKIHATAFEIDPMW-LIESASRRQ 864 + L+ E ++ D+ + GS+ IE + + +K+I A++I P W I + + Sbjct: 681 ENGLYSEKILRDIAENGGSLYGIEAPEGKEDVIERMKRIFLVAYDI-PWWDHIRAEAEIS 739 Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSA 908 +WI A S + + + S ++ Y A +GLK T Y S+SA Sbjct: 740 RWICAAVSKTINMPNWVSVSDIEKAYLFAHRLGLKGITVYRDGSKSA 786 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 7/100 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V FD +I RAI MA+ G + ++K + + + Sbjct: 5 KVVKRDGRVVEFDSFRIRRAIE---MAMREVGKFDEAILDKVVKYVLDVIDSTFSDERPP 61 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 H+E+IQD VE +LM+ ++ + Y++YR+ER +R Sbjct: 62 ----HVEEIQDIVELALMKYDLFEVAKAYIVYRKEREKIR 97 >gi|322418582|ref|YP_004197805.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] gi|320124969|gb|ADW12529.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] Length = 745 Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 188/641 (29%), Positives = 304/641 (47%), Gaps = 81/641 (12%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350 L +L RY G +E F RVA +A ++ +K+A +FYN++++F Sbjct: 18 LTVLEKRYLKRDQTGKTLETAADMFRRVATAIAQADSVFDKKADISALSDKFYNMMTNFE 77 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF +++ A++ K GG G ++ +R Sbjct: 78 FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPA 137 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F++V + + QGG R+GA A L H D+ +F+ + Sbjct: 138 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCK---- 193 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 +D+R+ ++ N + I + FMK V + + L +P + L + Sbjct: 194 NDQRQLNNFNISVGITEEFMKAVDADKDYNLVNPRDKKQAGTLNAR-------------- 239 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF +I A W E G P I F D N +P H+G + S+N C E L Sbjct: 240 ----KVFNRIVKQA-W--------ENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + + D+DKL ++TAV LDNVI++N + +E+ + Sbjct: 287 LPYES----CNLGSINLGKMVVHGKVDWDKLKEVVQTAVHFLDNVIEVNNYPLEQIDQMT 342 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 ++R IGLG+MG+ L +L IPY S E+VE+ ++ M+FI+ AS +LA+ RGA+ + Sbjct: 343 RSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGKIASRKLAKSRGAFPN 402 Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 FKGS++D G PI RN+ IAPT Sbjct: 403 FKGSIYDAPGADPI-----------------------------------RNATVTTIAPT 427 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S ++P + +V+ M + V VN K + + E ++ + H Sbjct: 428 GTISIIANASSGVEPLFAVSFVRQVMDKNILVEVNPLFEKIAKDQGFYSEELMQRIAEH- 486 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 G++ +I IP+ ++ + TA +I P I + Q+ D A S + + E + + ++ Sbjct: 487 GTVQDISAIPEGVRDVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPREATIEDVEK 546 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 +YR A+ K R S S K + K+ A PV Sbjct: 547 VYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAKIAAPPV 587 >gi|61806079|ref|YP_214439.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|61374588|gb|AAX44585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|265525291|gb|ACY76088.1| NrdA [Prochlorococcus phage P-SSM2] Length = 775 Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 196/685 (28%), Positives = 318/685 (46%), Gaps = 58/685 (8%) Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PN 215 N +++ ++ EEAC GL VS+ V ++ YDG++ ++++ LI S+ LI+ + PN Sbjct: 18 LNLEKIHVMCEEACEGLAGVSASQVEIQSGIQFYDGITTAEIQEILIRSASDLIDLDHPN 77 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 Y V AR LL LR+++ + + P H +++ VK + ++D Sbjct: 78 YQFVAARLLLFSLRKQLFGRLRECPTVIDH--------------VQKCVKKGIYDAEILD 123 Query: 276 F----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLA 329 + L + + + RDF F Y GL+ + D+Y + G E PQ ++ +A + Sbjct: 124 LYSEEEYNRLQSFIDHSRDFLFTYAGLRQVVDKYLVQDRSTGEVYETPQFMYLMIAATI- 182 Query: 330 LKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIF 384 + KE R ++Y+ +S TP + +G R P Q +SC L + D L IF Sbjct: 183 FSKYPKETRLDYVRKYYDAISRHRINIPTPIM--AGVRTPIRQFASCVLVDIDDTLDSIF 240 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + G+G + +RG+ A I G + GV+PFLK T Q G R Sbjct: 241 SSDMAIGKYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVVPFLKKFESTVRCCTQNGIR 300 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 G+ + WH ++ + L L+ N G + R ++ + + LF +R QN TLFSP Sbjct: 301 GGSATVHFPIWHQEISDILVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIQNLPITLFSP 360 Query: 505 DEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 +V L+D +G + F+ Y YE E I A L +L ETG ++ Sbjct: 361 HDVPGLYDAFGSDTFDELYTQYESD----ESIPRTTIGAQELILDLLKERAETGRIYLMN 416 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQ 615 D CN S + V SNLC EITL + + E A+C L +IN+ Sbjct: 417 IDHCN--SHSSFLDKVEMSNLCQEITLPTKPIQHIDDETGEIALCILSAINI-----GKI 469 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L ++R LD +ID + + A+ + R++G+G +G L + Y Sbjct: 470 RDVSDLEGLCDLSIRSLDELIDFQGYPVRAAEIATKARRSLGVGFIGLAHYLAKQGVKYE 529 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 PEA ++ + E ++ I +SV LA+E+GA + + + QG+ PID+ + DE Sbjct: 530 DPEAWKLVHDLTEVFQYNLIKSSVNLAKEKGACTYSDRTKYSQGILPIDT---YKQDVDE 586 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 L N S W+ L++ VK G+RNS A P+ + + +C + I+P L +K + Sbjct: 587 LVPNNLS-CDWESLREDVKQYGIRNSTLSAQMPSESSSVVCNATNGIEPPRGYLSIKKSK 645 Query: 796 SGDF-TVVNSFLVNELKQRD--LWD 817 G +V S+ N LK LWD Sbjct: 646 KGPLKQIVPSY--NTLKNNYTLLWD 668 >gi|300088374|ref|YP_003758896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528107|gb|ADJ26575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 902 Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 173/592 (29%), Positives = 273/592 (46%), Gaps = 83/592 (14%) Query: 292 AFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYN 344 AF L +L RY G IE P+ RVA +A E + + EFY Sbjct: 154 AFSDNALAVLNKRYLKKDKQGQAIEAPEDMLRRVARTVAAAELIYDPKCNVRNVENEFYG 213 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L++ F+ ++PTL N+G QLS+CF+ + D + IF A++ AM+ K GG G + Sbjct: 214 LMARLEFLPNSPTLMNAGRELGQLSACFVLPIDDSIESIFDAVKHTAMIHKSGGGTGFSF 273 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R + T G + G + F++ + + QGG R+GA A L H D+E F+ Sbjct: 274 SRLRPESDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIEHFIT 333 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G + N + I D FM+ + + L +P Sbjct: 334 AKQQAG----VLTNFNLSVAITDKFMEAARADEEYELINP-------------------- 369 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 GE+ R+ A A++ +++ + ++TG P I F D N +P +G + S+N Sbjct: 370 -----QNGEVAGRRR--ARAIFDQIVQLAWKTGDPGIVFIDRINAENPTPKLGRIESTNP 422 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN---QFDYDKLASTIRTAVRVLDNVIDINCH 641 C E L CNLGS+NL N Q DYDKL T+RTAVR LD+VID+N Sbjct: 423 CGEQPLLPYES----CNLGSVNLSKMVKGNGKKQVDYDKLRYTVRTAVRFLDDVIDVNKF 478 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +E+ + R IGLG+MGF L L +PY SPEA+ + +E M FI + AS L Sbjct: 479 PLEQIAEQTRRTRKIGLGVMGFADMLIALGVPYNSPEALRVGEEVMGFIQAESHRASSAL 538 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A ERG + +++GS +D + MRN+ Sbjct: 539 ADERGVFPAYEGSKYD------------------------------------GQVKMRNA 562 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAM 820 +C IAPT T++ I G S I+P + + ++ M G + VN + + + E + Sbjct: 563 SCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNIMDGTRMIEVNPYFAEAARSGGFYSEEL 622 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + L + +++ +P+++KK+ TA I P ++ + QK+ D A S Sbjct: 623 MKKLA-EGAHLEDMKEVPEEVKKLFVTAHSITPEGHVKMQAAFQKYTDNAVS 673 >gi|322510749|gb|ADX06063.1| putative ribonucleotide diphosphate reductase, large subunit [Organic Lake phycodnavirus 1] Length = 824 Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 137/332 (41%), Positives = 200/332 (60%), Gaps = 10/332 (3%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 Y+R++ +Y G + L Y + + IE Q +MRVA+ + K K + Y+ L Sbjct: 129 YDRNYLIDYFGYKTLERAYLMRNDNMVIENIQHLWMRVAVQIHGNCLPKVK---DTYDGL 185 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405 S F+ +TPTL+N+GT PQLSSC+L + +D + GIF L++ A ++K++GG+G Sbjct: 186 SKKLFIHATPTLYNAGTTRPQLSSCYLLGMEEDSIDGIFNTLRDCASISKWAGGIGLHIH 245 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464 VR G I GTNG S G++P L+V N+TA V+QGG KR G+ YLE WH D+ EFL+ Sbjct: 246 NVRAKGTSILGTNGTSNGIVPMLRVFNNTARYVDQGGGKRNGSFAMYLEPWHGDILEFLE 305 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 LRKN GD+ R D+ A WIPDLFM+++ + W L P L ++YG+EFE YE+ Sbjct: 306 LRKNHGDEEMRARDLFYALWIPDLFMRKIEHDEDWYLMCPHICKHLDNVYGEEFETLYES 365 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y + +K+ A LW +L ETG P++ +KD CN +S Q+++G + SSNL Sbjct: 366 YVSSG-----QYLKKMKARELWFHILDSQMETGTPYMLYKDACNQKSNQKNIGTIKSSNL 420 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 C EI S +E+AVCNL SI+L + ++F Sbjct: 421 CCEIIEYSDKDESAVCNLASISLSSFVKKSKF 452 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 170/317 (53%), Gaps = 12/317 (3%) Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 +G + + + FDY+ L + L+ +ID+N + +K ++SN HR IG+G+ Sbjct: 504 IGGFSDVISLFKSTFDYNGLHKITKMVTENLNRIIDVNYYPTDKTRQSNLKHRPIGIGVQ 563 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV 720 G +L+I + S EA EI E + ++ S+E+A+E+ Y+SFKGS +G+ Sbjct: 564 GLADVFAMLNIAFDSDEAKEINKMIFETMYHASLEKSMEMAKEQQTQYASFKGSPLSEGI 623 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D + + R W LK+ + G NS CMA PTA+ + I ++ Sbjct: 624 LQFDMWNVTP----------SKRYDWGALKQNIIKYGTMNSLCMAPMPTASTSQILSNNE 673 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + ++G+F V+N L+ EL ++W+ ++ +D+ + GSI +I IPD Sbjct: 674 CFEPFTSNMYTRRTLAGEFMVINKHLMKELIDLNIWNMSIKNDILKYKGSIQSIAEIPDY 733 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 +K + +E+ +++ + R +I Q+QS+NL+++EP+ K L ++ AW GLKT Sbjct: 734 IKAKYKIVWEMSMKTIMDMSKDRGAYICQSQSMNLWVEEPNYKTLTNMHLYAWKCGLKTG 793 Query: 900 TYYLRSRSATSVEKSTL 916 YYLR ++ ++ T+ Sbjct: 794 MYYLRRKAKHHAQQFTV 810 >gi|78222511|ref|YP_384258.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter metallireducens GS-15] gi|78193766|gb|ABB31533.1| Ribonucleotide reductase large subunit [Geobacter metallireducens GS-15] Length = 742 Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 180/618 (29%), Positives = 296/618 (47%), Gaps = 81/618 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFHFM 352 +L RY +G +E P F RVA +A+ + +K+A +FY+L++SF F+ Sbjct: 20 VLEKRYLKRDTDGRVLETPADMFRRVAEAIAVADRNFDKKADTKALAQKFYDLMTSFEFL 79 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 80 PNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFSRLRPAND 139 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T+G S G I F++V + + QGG R+GA L H D+ +F+ + DD Sbjct: 140 VVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCK----DD 195 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ ++ N + + + FM+ V ++A + L +P + L + Sbjct: 196 QKHLNNFNISVGLTEAFMEAVERDADYDLRNPRDGKPCGTLNAR---------------- 239 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 KVF +I A W+ G P I F D N +P H+G + S+N C E L Sbjct: 240 --KVFSRIVKQA-WK--------NGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLP 288 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNLGSINL N D+ +L IR V LDNVI++N + + + + Sbjct: 289 YES----CNLGSINLGKMVNNGDVDWKRLREVIRLGVHFLDNVIEVNNYPLPQINDMTRS 344 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R IGLG+MG+ L LL IPY+SPEA+ + ++ M FI+ + S ELA RGA+ +F Sbjct: 345 NRKIGLGVMGWADMLILLGIPYSSPEAISLGEKVMRFINDEGHAYSRELAAVRGAFPNFV 404 Query: 713 GSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS +D+ G PI RN+ IAPT T Sbjct: 405 GSTFDRPGEGPI-----------------------------------RNATVTTIAPTGT 429 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I S ++P + +V+ + + V VN + + + E ++ + H G+ Sbjct: 430 ISIIANASSGVEPLFAVSFVRQVLDKNILVEVNPIFEEIARDQGFYSEELMQKIAQH-GT 488 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889 + ++ IP+D++K+ TA +I P IE + QK+ D A S + + + + ++++ +Y Sbjct: 489 VHDLAEIPEDIRKVFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNAATIEEVEKVY 548 Query: 890 RQAWLMGLKTTYYLRSRS 907 R A+ + K R S Sbjct: 549 RLAYKLECKGVTIYRDGS 566 >gi|255003305|ref|ZP_05278269.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. Puerto Rico] gi|255004431|ref|ZP_05279232.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. Virginia] Length = 595 Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 199/646 (30%), Positives = 305/646 (47%), Gaps = 109/646 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD +L DRY L E Q F+RV+ ++ ++ A Y+ +S Sbjct: 10 RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYY----SDNDEHAQRLYDYMSK 60 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 61 LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 120 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + ++GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD+RK Sbjct: 121 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 179 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V Q+ W L SP + Sbjct: 180 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKDKC------------------- 220 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584 V + A LW K+LT ETG P++ F D N P + +G+ V SNL Sbjct: 221 --------VISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 272 Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST----IRTAVRVLDNV 635 CTEITL + + TA+C L S+NL +Y + ST I +R LDNV Sbjct: 273 CTEITLATGEDHLGKSRTAICCLASLNL---------EYYDMWSTEPMFIEDVMRFLDNV 323 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 I+ IE+AK + R+IG+G+MGF S L +P+ S A + E I Sbjct: 324 LTDFINKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIK 383 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A S +LA E+G D + N+ R Sbjct: 384 RQADEVSHKLALEKGP------------------------CPDAIDANKMERF------- 412 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + ++IAPTA+I+ I G + I+P N++ ++G F V N FL L Sbjct: 413 ---------VHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLL 463 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + L ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QA Sbjct: 464 ESKGLDNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQA 523 Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS+N++L P+G + L I+ AW G+K+ YYLRS+S +K Sbjct: 524 QSVNIFL--PAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADK 567 >gi|56416956|ref|YP_154030.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. St. Maries] gi|222475322|ref|YP_002563739.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma marginale str. Florida] gi|56388188|gb|AAV86775.1| ribonuclease-diphosphate reductase alpha chain [Anaplasma marginale str. St. Maries] gi|222419460|gb|ACM49483.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma marginale str. Florida] Length = 606 Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 199/646 (30%), Positives = 305/646 (47%), Gaps = 109/646 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD +L DRY L E Q F+RV+ ++ ++ A Y+ +S Sbjct: 21 RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYY----SDNDEHAQRLYDYMSK 71 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 72 LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 131 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + ++GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD+RK Sbjct: 132 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 190 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V Q+ W L SP + Sbjct: 191 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKDKC------------------- 231 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584 V + A LW K+LT ETG P++ F D N P + +G+ V SNL Sbjct: 232 --------VISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 283 Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST----IRTAVRVLDNV 635 CTEITL + + TA+C L S+NL +Y + ST I +R LDNV Sbjct: 284 CTEITLATGEDHLGKSRTAICCLASLNL---------EYYDMWSTEPMFIEDVMRFLDNV 334 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 I+ IE+AK + R+IG+G+MGF S L +P+ S A + E I Sbjct: 335 LTDFINKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIK 394 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A S +LA E+G D + N+ R Sbjct: 395 RQADEVSHKLALEKGP------------------------CPDAIDANKMERF------- 423 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + ++IAPTA+I+ I G + I+P N++ ++G F V N FL L Sbjct: 424 ---------VHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLL 474 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + L ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QA Sbjct: 475 ESKGLDNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQA 534 Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS+N++L P+G + L I+ AW G+K+ YYLRS+S +K Sbjct: 535 QSVNIFL--PAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADK 578 >gi|254995135|ref|ZP_05277325.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. Mississippi] Length = 595 Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 198/646 (30%), Positives = 305/646 (47%), Gaps = 109/646 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD +L DRY L E Q F+RV+ ++ ++ A Y+ +S Sbjct: 10 RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYY----SDNDEHAQRLYDYMSK 60 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FM +TP L N GT SCFL D L GI EN LA GG+G+ W +R Sbjct: 61 LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 120 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G + ++GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD+RK Sbjct: 121 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 179 Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 TG D R+ +++ + D FM+ V Q+ W L SP + Sbjct: 180 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKDKC------------------- 220 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584 V + A +W K+LT ETG P++ F D N P + +G+ V SNL Sbjct: 221 --------VISTVRARDMWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 272 Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST----IRTAVRVLDNV 635 CTEITL + + TA+C L S+NL +Y + ST I +R LDNV Sbjct: 273 CTEITLATGEDHLGKSRTAICCLASLNL---------EYYDMWSTEPMFIEDVMRFLDNV 323 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 I+ IE+AK + R+IG+G+MGF S L +P+ S A + E I Sbjct: 324 LTDFINKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIK 383 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A S +LA E+G D + N+ R Sbjct: 384 RQADEVSHKLALEKGP------------------------CPDAIDANKMERF------- 412 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + ++IAPTA+I+ I G + I+P N++ ++G F V N FL L Sbjct: 413 ---------VHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLL 463 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + L ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QA Sbjct: 464 ESKGLDNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQA 523 Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS+N++L P+G + L I+ AW G+K+ YYLRS+S +K Sbjct: 524 QSVNIFL--PAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADK 567 >gi|197117589|ref|YP_002138016.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter bemidjiensis Bem] gi|197086949|gb|ACH38220.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent [Geobacter bemidjiensis Bem] Length = 744 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 183/620 (29%), Positives = 301/620 (48%), Gaps = 81/620 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350 L +L RY G +E F RVA +A + +K+A +FYN++++F Sbjct: 18 LTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNMMTNFE 77 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF +++ A++ K GG G ++ +R Sbjct: 78 FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPA 137 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F++V + + QGG R+GA A L H D+ +F+ + Sbjct: 138 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCKA--- 194 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D+R+ ++ N + I + FMK V + +TL++P ++ + A + R Sbjct: 195 -DQRQLNNFNISVGITEAFMKAVDADEEYTLYNP-----------RDKQPAGKQNAR--- 239 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF +I A W E G P I F D N +P H+G + S+N C E L Sbjct: 240 ----KVFNRIVKQA-W--------ENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + + D+DKL +RT+V LDNVI++N + +++ + Sbjct: 287 LPYES----CNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDEMT 342 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 ++R IGLG+MG+ L +L IPY S E+VE+ ++ M+FI+ +AS +LA+ RGA+ + Sbjct: 343 RSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAFPN 402 Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 FKGS++D+ G PI RN+ IAPT Sbjct: 403 FKGSVYDKLGAEPI-----------------------------------RNATVTTIAPT 427 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S ++P + YV+ M + V VN K + + ++ + H Sbjct: 428 GTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRIAEH- 486 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 G++ +I IP+ ++++ TA +I P I + Q+ D A S + + E + + ++ Sbjct: 487 GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDVEK 546 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +YR A+ K R S Sbjct: 547 VYRLAYESNCKGVTIYRDGS 566 >gi|242399121|ref|YP_002994545.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM 739] gi|242265514|gb|ACS90196.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM 739] Length = 897 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 219/865 (25%), Positives = 388/865 (44%), Gaps = 161/865 (18%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD S+I AI +A V +R +++ + + + R+ + + Sbjct: 5 KVMKRDGRIVPFDESRIRWAIQRAMWEV-------GVRDDNLLDKVVKDVIDRINELYEG 57 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + HIE+IQD VE LM++G ++ + Y++YR++++++R K KI+ Sbjct: 58 Q-VPHIENIQDIVELELMRNGLFEVAKAYIIYRKKKAEIREE------------KRKIL- 103 Query: 150 DDGTLISFNSKRLEMIVEE-ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 N ++L+ I + + +GL+ + +SR Sbjct: 104 --------NKEKLDEIDKRFSINGLR----------------------------VLASRY 127 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCR---YIEEGV 264 LI+ E T + L E R +L + LY E F + YI++ Sbjct: 128 LIKNEEGKIVETPKELFE--RVAILAAI-----------PDLLYDERMFSKEGTYIQDLK 174 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + ++ +FD +Y K + + FE + +N R E+ + M+V Sbjct: 175 RVEYYLQNFENFDSIYTIGRFKLNK-YQFERM------------VNLYR-ELAEKGKMKV 220 Query: 325 AMGLALK-----ETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ L E +K + +E F+NL+ + FM +TP L NSG LS+CF+ + D Sbjct: 221 SIDEFLNMLKNGEFDKYEGVIEEFFNLMVNQVFMPNTPALINSGRPLGMLSACFVVPIED 280 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 D+ I A + A++ K GG G +++ +R G + T G + G I F+ + + + + Sbjct: 281 DMESIMKAAHDVAIIQKMGGGTGLNFSKIRPEGDLVGTTTGAASGPISFMHLIDAVSNVI 340 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 QGG R+GA LE WH D+E+F+ + +N G + +++ W F + + + Sbjct: 341 KQGGVRRGANMGILEVWHPDIEKFIHAKEQNVGTNILSNFNISVGMWAD--FWEALKEGK 398 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 + L +P R KV ++I +L+ ++ M + Sbjct: 399 KYPLINP--------------------------RTGKKV-KEIDPRSLFEELAYMAWAKA 431 Query: 558 HPWITFKDPCNIRS---PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 P + F D N R+ P + + ++N C E L CNL SIN LA F Sbjct: 432 DPGVVFFDVINKRNVLVPAKGEK-IRATNPCGEEPLYDYES----CNLASIN-LAKFVKY 485 Query: 615 Q------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 F++D+ A I + LDN ID+N + + + R IG+G+MG AL Sbjct: 486 DDEGKPYFEWDEYAKVIMKVAKYLDNAIDVNKFPLPEIDYNTKLSRRIGVGIMGLADALF 545 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L I Y S E + ++ E+++F+A S+ A+ERG + + + + +G PI+ Sbjct: 546 KLGIRYNSKEGYDFMRKATEYLTFYAYKYSIRAAKERGPFPLYHKTEYPEGKLPIEG--- 602 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 LPWDEL + ++ G+RN+ PT +++ I S I+P + Sbjct: 603 -------YYHKEIWNLPWDELVEDLRKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFAL 655 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y KS G+F V+ ELK+R L+ + ++ + + GS+ +E IP+D++KI TA Sbjct: 656 VYKKSVTVGEFYYVDPIFEAELKKRGLYTDEILQKISDNYGSVQGLEEIPEDVQKIFVTA 715 Query: 849 FEID-----------PMWLIESASR 862 +I +WL +SAS+ Sbjct: 716 MDIHWFDHLLAQASIQLWLTDSASK 740 >gi|238613293|ref|XP_002398406.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553] gi|215474876|gb|EEB99336.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553] Length = 319 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/314 (42%), Positives = 185/314 (58%), Gaps = 6/314 (1%) Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG S G++P L+ + TA V+QGG KR GA Y+E WH D+ F+DLRKN G + Sbjct: 1 GTNGYSNGIVPMLRFYHATARYVDQGGNKRPGAFAMYIEPWHADIFAFIDLRKNHGKEEV 60 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R D+ A WIPDLFMKRV A W+L P+E L D+YG EFE YE YER+ E Sbjct: 61 RARDLFYALWIPDLFMKRVEAGANWSLVCPNEAPGLPDVYGAEFEALYEKYEREGRARE- 119 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 I A LW +L ETG P++ +KD N +S Q+++GV+ SSNLCTEI SS Sbjct: 120 ----SIPAQKLWYAILEAQVETGTPFMCYKDHANSKSNQKNLGVIKSSNLCTEIMEYSSP 175 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 +ETAVCNL S+ L +F++ KL + L+ +ID+N + + +A++SN HR Sbjct: 176 DETAVCNLASLALPTFVHKGEFNFKKLHDVAKVVAFNLNRIIDVNYYPVPEARRSNMRHR 235 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G+ G L +P+ SPEA + + E I + A+ AS+++A++ G Y ++ GS Sbjct: 236 PIGIGVQGLADTFMALRLPFESPEAKLLNIQIFETIYYAALDASLDIAEKDGPYETWMGS 295 Query: 715 LWDQGVFPIDSIGL 728 QG D G+ Sbjct: 296 PAQQGPMQYDIGGV 309 >gi|254496937|ref|ZP_05109776.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella drancourtii LLAP12] gi|254353846|gb|EET12542.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella drancourtii LLAP12] Length = 188 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/198 (62%), Positives = 154/198 (77%), Gaps = 11/198 (5%) Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK +LWD Sbjct: 1 MRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINPYLVADLKALNLWD 60 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E M++DLKY +GS+ I RIP +LK+ +AT+FEIDP+WL+++ASRRQKWIDQAQSLN+Y+ Sbjct: 61 EVMVNDLKYFNGSVQPISRIPAELKQRYATSFEIDPIWLVDAASRRQKWIDQAQSLNIYM 120 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 +PSGKKLD +Y AW GLKTTYYLRS AT+ EKST+ DG LNAV + Sbjct: 121 AQPSGKKLDQLYMHAWTRGLKTTYYLRSLGATNAEKSTI--TDGALNAVKIISDE----- 173 Query: 938 LGIPSSCTS-DTECEVCQ 954 P C+ D +CE CQ Sbjct: 174 ---PKVCSILDPDCEACQ 188 >gi|254169166|ref|ZP_04876002.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|289596591|ref|YP_003483287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197621901|gb|EDY34480.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|289534378|gb|ADD08725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 768 Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 180/593 (30%), Positives = 303/593 (51%), Gaps = 78/593 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E+R EFY+++ + +F+ ++PTL NS TR QLS+CF+ VPD + GIF A++ AM+ K Sbjct: 215 EERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYAAMIHK 274 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG G ++ +R G + T G + G + F++V + + QGGKR+GA L Sbjct: 275 SGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMGVLSVH 334 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EF+ + + + + + N + + D FM + ++ + L +P G Sbjct: 335 HPDILEFITSKDS---ENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPRN--------G 383 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +E ++I A +W ++T ++TG P + F D N + P +H Sbjct: 384 EEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEVNRKHPVKH 424 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +G + S+N C E L CNLGSINL N + +DKL I A+ LDNV Sbjct: 425 LGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDKLRKVIHIAIHFLDNV 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + + + ++ R IGLG+MG+ L L IPY S EAVE+A++ M+FI+ + Sbjct: 481 IDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFINEESH 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS++LA++RG + +++GS W W K Sbjct: 541 RASMKLAEKRGVFPAWEGSEW-----------------------------WK------KG 565 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRD 814 + +RN+ IAPT TI+ I G S SI+P + +YV+ + G + +N K+R Sbjct: 566 MKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEIAKKRG 625 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872 + E ++ ++ GSI N++ +P+D+K+I TA +I P W + + QK++D A ++ Sbjct: 626 FYSEDLMLEIA-KSGSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDNAVSKT 683 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923 +NL D + + ++ +Y A+ + K T Y +S+ ++K+ K ++G L Sbjct: 684 VNLRYD-ATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKAD-KAIEGIL 734 Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 33 KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92 KR+G +D +I+ AI KAF+ E + D + + E+ + + I Sbjct: 7 KRSGDYVLYDRKRIANAIKKAFL--ETGEVDTPEEIADELSKIVEERIQKYE-------I 57 Query: 93 VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 +E IQD+VE LM+ + + + Y++YRE R VR A+ Sbjct: 58 PSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAK 97 >gi|221316491|ref|ZP_03598296.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 568 Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 180/593 (30%), Positives = 290/593 (48%), Gaps = 72/593 (12%) Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 LS+ + +TPTL N+G LSSCF+ T D L GIF + + +K G+G + Sbjct: 1 LSNLYLTLATPTLMNAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFG 60 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I G G + G++ ++K ++TAV+V+Q G+R GAV YL+ WH D+E+F+DL Sbjct: 61 KLRATGSDIRGHKGAASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDL 120 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE--- 517 R NTGD +R +++ T IPD FM++V + + LF P E+ L D Y K+ Sbjct: 121 RLNTGDKSKRAYNVFTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLG 180 Query: 518 -------FEIAYE-NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + A+ +Y D + R++ A+ L ++ + ETG P++ ++D N Sbjct: 181 EKETPNPIDHAWTYHYYLCVDNNNLDK-RRVPAIELKKRYMKAQLETGIPYMFYRDTVNR 239 Query: 570 RSPQQHVGVVHSSNLCTEITLNSS----SEETAVCNLGSINL-----------LAHFANN 614 +P H G+++SSNLC+EI N S ++ET G + + L+ N Sbjct: 240 NNPNSHSGMIYSSNLCSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVN 299 Query: 615 QFDYDKLAS-TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + + D + I+ +R LDNVI + + +A+ +N +RA+G G G + L I Sbjct: 300 RTEKDGVTERVIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIM 359 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S +A+E + E I + I AS L +E+G+Y F+GS W G E Sbjct: 360 WDSEQAIEYISKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG-----------EWF 408 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 +E +N L EL + MRN AIAPT + I G + IDP + +Y + Sbjct: 409 EERDLNSPEWLEVKELASKY----MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFER 464 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 DF + LV EL Q+ + ++Y + ++ Sbjct: 465 KK--DFHL--PILVPELNQKTWFFYKPTMKMEYENEK-------------------QLAH 501 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905 +W I+ + RQK++DQA S N Y+ + K ++ + W G+KT+YY RS Sbjct: 502 LWAIKHNAARQKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 554 >gi|253701670|ref|YP_003022859.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter sp. M21] gi|251776520|gb|ACT19101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M21] Length = 744 Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 183/620 (29%), Positives = 300/620 (48%), Gaps = 81/620 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350 L +L RY G +E F RVA +A + +K+A +FY ++++F Sbjct: 18 LTVLEKRYLKRDQTGKPLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYTMMTNFE 77 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF +++ A++ K GG G ++ +R Sbjct: 78 FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPA 137 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F++V + + QGG R+GA A L H D+ +F+ + Sbjct: 138 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCK---- 193 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D+R+ ++ N + I + FMK V + +TLF+P ++ + A + R Sbjct: 194 SDQRQLNNFNISVGITEAFMKAVDADEEYTLFNP-----------RDKQPAGKQNAR--- 239 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF +I A W E G P I F D N +P H+G + S+N C E L Sbjct: 240 ----KVFNRIVKQA-W--------ENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + + D+DKL +RT+V LDNVI++N + +++ + Sbjct: 287 LPYES----CNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDEMT 342 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 ++R IGLG+MG+ L +L IPY S E+VE+ ++ M+FI+ +AS +LA+ RGA+ + Sbjct: 343 RSNRKIGLGVMGWADMLIMLGIPYGSAESVELGEKVMQFINDEGHAASRQLAKTRGAFPN 402 Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 FKGS++D+ G PI RN+ IAPT Sbjct: 403 FKGSVYDKPGAEPI-----------------------------------RNATVTTIAPT 427 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S ++P + YV+ M + V VN K + + ++ + H Sbjct: 428 GTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRIAEH- 486 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 G++ +I IP+ ++++ TA +I P I + Q+ D A S + + E + + ++ Sbjct: 487 GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDVEK 546 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +YR A+ K R S Sbjct: 547 VYRLAYESNCKGVTIYRDGS 566 >gi|327401108|ref|YP_004341947.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Archaeoglobus veneficus SNP6] gi|327316616|gb|AEA47232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Archaeoglobus veneficus SNP6] Length = 749 Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 185/616 (30%), Positives = 294/616 (47%), Gaps = 79/616 (12%) Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCS 354 +L RY L G+ IE P+ RVA +A E + EK A +F+ ++ + FM + Sbjct: 10 VLKKRYLLKDEEGNVIETPEQMLWRVANAIAQPEEKYGGDVEKTAKQFFEMMDNQLFMPN 69 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+GT QLS+CF+ V D + GIF AL + A + K GG G ++ +R G + Sbjct: 70 SPTLMNAGTELNQLSACFVIPVDDSIDGIFKALWDMAKVQKSGGGTGFSFSRLRPKGDIV 129 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + + QGGKR+GA L H D+E+F+ + G R Sbjct: 130 KSTMGVASGPVSFMKIFDAATEQIKQGGKRRGANMGVLNVHHPDIEDFITAKWEEGVLR- 188 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + N + + D FM+ + +A + +P GE Sbjct: 189 ---NFNISVAVTDAFMEALKNDAEYEQINP-------------------------RTGE- 219 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 V RK+ A ++ ++ + G P + F D N +P H+G++ ++N C E L Sbjct: 220 -VVRKVPARKIFNLIVEGAWRNGEPGVVFIDTINRHNPTPHIGMIEATNPCGEQPLLPYE 278 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGSIN+ N D+D L + AVR LDNVID+N + + + +K +R Sbjct: 279 S----CNLGSINVSKFVKNGDIDWDWLREIVWLAVRFLDNVIDVNNYPLPEIEKMTLANR 334 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MGF L L IPY S E + +A++ M FI + AS LA+ERG + ++KGS Sbjct: 335 KIGLGVMGFADLLFKLKIPYDSEEGIALAEKLMSFIQEESHKASQALAEERGVFPNWKGS 394 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W++ K I MRN+ IAPT TI+ Sbjct: 395 TWEK-----------------------------------KGIKMRNATTTTIAPTGTISI 419 Query: 775 ICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I G S I+P Y + + ++ +F +N + L+Q L+ + +I+ + +GSI Sbjct: 420 IAGCSSGIEPVYALAFKRMHILDGEEFFEINPIFEDTLRQLGLYSDELIAKVA-EEGSIQ 478 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 +I IP ++K+I A +I P W + + QK+ D A S + + + + K ++ + Sbjct: 479 DIPEIPKEIKRIFKCALDIAPEWHVRMQAAFQKYTDNAVSKTINMPNHATRKDVEKAFLL 538 Query: 892 AWLMGLKTTYYLRSRS 907 A+ +G K R S Sbjct: 539 AYELGCKGITVYRDGS 554 >gi|188584791|ref|YP_001916336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349478|gb|ACB83748.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Natranaerobius thermophilus JW/NM-WN-LF] Length = 752 Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 189/628 (30%), Positives = 298/628 (47%), Gaps = 84/628 (13%) Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET---EKEKRAV-----EFYNLLSSFHF 351 +L RY E P+ RVA +A E +K+K+ V F++L+ + +F Sbjct: 10 VLEKRYLKTNEKGETENPEDMLKRVADNIAQVEKDVYQKDKQEVSKVSQNFFDLMDNQYF 69 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 M ++PTL N+G QL++CF+ + D + IF A++ A++ K GG G ++ +R Sbjct: 70 MPNSPTLMNAGRELQQLAACFVLPIEDSMESIFEAIKNAALIHKSGGGTGFSFSNLRPKN 129 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + T G + G + F+KV N AV QGG R+GA L H D++EF+ ++ Sbjct: 130 DIVLSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRVDHPDIQEFITCKR---- 185 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D ++ N + I + FM+ V Q+ ++L +P + L +E Sbjct: 186 DSDEINNFNISVGITEEFMEAVKQDGEYSLKNPKNGQAVKTLRARE-------------- 231 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 ++ K++ M + G P I F D N +P H+G + S+N C E L Sbjct: 232 -------------VFDKIVEMAWGNGEPGIVFIDKMNENNPTPHIGEIESTNPCGEQPLL 278 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 CNLGS+NL N DY L T+ TAV LDNVID N + + + +K++ Sbjct: 279 PFES----CNLGSVNLSKMVNNGAVDYQLLKETVHTAVHFLDNVIDANRYPLPEIEKTSK 334 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+MGF L L IPY S EA+++A++ M +I + + S ELA+ERGA+ +F Sbjct: 335 ENRKIGLGVMGFGDMLFKLRIPYNSQEALDLAEKVMGYIDQESKAKSQELAKERGAFPNF 394 Query: 712 KGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 KGS++DQ G PI RN+ IAPT Sbjct: 395 KGSIYDQKGEEPI-----------------------------------RNATTTTIAPTG 419 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDG 829 TI+ +CG S I+P + + ++ + D V VN ++ + ++ + G Sbjct: 420 TISILCGTSSGIEPLFALAFTRNVLDNDKLVEVNPVFKEATEEAGCYSSELMEKVA-DKG 478 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 SI +I+ IPD +KK+ T+ +I P W ++ + QK D A S + L +E K + I Sbjct: 479 SIQDIDEIPDSIKKVFVTSHDISPEWHLKMQAAFQKATDNAVSKTVNLPNEADLKDVYEI 538 Query: 889 YRQAWLMGLK--TTYYLRSRSATSVEKS 914 Y A + K T Y SR ++ S Sbjct: 539 YNLAHELNCKGVTVYRDGSRDTQVLQTS 566 >gi|326782457|ref|YP_004322857.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] gi|310003405|gb|ADO97802.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] Length = 765 Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 201/693 (29%), Positives = 323/693 (46%), Gaps = 49/693 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ DG N +++ +VE AC GL VS+ V + YDG+ SD++ LI Sbjct: 9 IKVVKRDGVEEPINLEKIHKMVEHACYGLASVSASQVEINSGIQFYDGIKTSDIQEILIR 68 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI + PNY V AR LL LR+ V P+ E Q IE G Sbjct: 69 SANDLISLDNPNYQFVAARLLLFGLRKSVYGV---SPENHPKVEDQ------LSGGIESG 119 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 V + L ++ + + + + ++RD F Y GL+ + D+Y + +G E PQ + Sbjct: 120 VYDQSLIKAYSSEEFAEMDSYMDHDRDMLFTYAGLRQVVDKYLVQDRSSGKIYETPQYMY 179 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 M +A L K ++ + +YN +S TP + +G R P Q +SC L V Sbjct: 180 MLIAATLFQKYPQETRLDYVRRYYNAISKHQINIPTPVM--AGVRTPLRQFASCVLVDVD 237 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L IF + G+G + +RG+ + I G + GVIPFLK T Sbjct: 238 DTLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRC 297 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R N Sbjct: 298 CTQNGIRGGSATVHFPIWHSEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIANG 357 Query: 498 GWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKI-SAVALWRKMLTMLFE 555 +LFSP++V L+D +G + F+ Y +YE + V RKI +A L +L E Sbjct: 358 EISLFSPNDVPGLYDAFGTDAFDACYVDYE-----SDQSVPRKIVNAQELVLSLLKERAE 412 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607 TG ++ D CN S + V+ SNLC EITL N + E A+C L +IN+ Sbjct: 413 TGRLYLMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPINHINDDAGEIALCILSAINV 470 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D++ + AVR L+ +ID + ++ A++S R++G+G +G L Sbjct: 471 -----GKLKTLDEMETLCDLAVRGLEELIDYQDYPVDAARRSTLARRSLGIGYIGLAHYL 525 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y++ EA+ + E ++ + AS ++AQE+G F + + GV PIDS Sbjct: 526 AKRGLKYSAQEALSEVHDLTEAFQYYLLRASNKIAQEKGPCQDFGRTKYSDGVLPIDS-- 583 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + D L + + WD L+ + T G+R+S A P+ + + + + I+P Sbjct: 584 -YKKDVDALVLPEYN-YDWDSLRSDITTYGLRHSTLSAQMPSESSSVVSNATNGIEPPRD 641 Query: 788 NLYVKSNMSGDF-TVVNSFLVNELKQRD--LWD 817 L +K + G +V + N LK LWD Sbjct: 642 YLSIKKSKKGPLKQIVPQY--NSLKNNYTLLWD 672 >gi|289523461|ref|ZP_06440315.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503153|gb|EFD24317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 740 Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 186/619 (30%), Positives = 290/619 (46%), Gaps = 83/619 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHF 351 ++L RY L G+ IE P+ RVA +A E +E+ A +FY +++S F Sbjct: 17 KVLERRYLLKDEKGNLIETPEDMLWRVASAIAKAEKAFGDEESEEEWANKFYEMMASLDF 76 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QLS+CF+ V D + IF AL+ A++ K GG G +++ +R G Sbjct: 77 LPNSPTLMNAGTPTAQLSACFVLPVGDSMDEIFDALKYTALVHKSGGGTGFNFSSLRPYG 136 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + T G + G + F+++ + T V QGG R+GA L H DV +F+ + G Sbjct: 137 DIVKSTKGVASGPVSFMELFDHTTDVVKQGGMRRGANMGILNADHPDVIKFVKAKIEEG- 195 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + + N + FMK V + W L +P Sbjct: 196 ---KLKNFNISVGTTQKFMKAVLNDEEWELVNP-------------------------RT 227 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V K+ A L+ + M ++TG P I F D + ++G + ++N C E L Sbjct: 228 GE--VVDKVGARNLFDLLCEMAWKTGDPGIIFLDKIEASNLTPNLGSITATNPCGEQPLL 285 Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + D+ KL T+R AVR LD+VI++N I++ Sbjct: 286 PFES----CNLGSINLSNMVLPKGEIDWSKLERTVRIAVRFLDDVIEVNQFPIKEIADMT 341 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 + R IGLG+MG+ L L IPY S EA+ +A + M FI+ S LA+ RG + + Sbjct: 342 MSTRKIGLGVMGWADVLLKLRIPYDSDEALNLARKVMSFIAKIGHEESARLAETRGPFPA 401 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 +KGS W++ K + MRN+ IAPT Sbjct: 402 WKGSRWEE-----------------------------------KGMLMRNATVTTIAPTG 426 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ + VS ++P + Y + G+ T VN L++ L++ L+ EA+I +L Sbjct: 427 TISLVAEVSSGVEPVFALAYRRKAFEGEANLTYVNEILLDALREERLYSEALI-ELILER 485 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 GS+ ++ +PD LKK+ TA +I P W + + Q++ D A S + + E S + Sbjct: 486 GSLKELD-LPDSLKKVFVTAHDISPEWHVRMQAAFQEYTDNAVSKTINMPHEASVDDVKK 544 Query: 888 IYRQAWLMGLKTTYYLRSR 906 Y A+ +G K R R Sbjct: 545 AYLLAYELGCKGITIFRDR 563 >gi|332184135|gb|AEE26389.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Francisella cf. novicida 3523] Length = 590 Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 193/652 (29%), Positives = 292/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FMK V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMKAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S IR +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIRDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S +A EI +E + Sbjct: 319 DNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQLHRVPFESQKAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|58532962|ref|YP_195185.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] gi|58331429|emb|CAF34215.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] Length = 776 Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 192/661 (29%), Positives = 316/661 (47%), Gaps = 36/661 (5%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG++ N +++ +VEEAC L VS+ V + +DG++ +++ LI S+ LI Sbjct: 14 DGSIEPLNLEKVHKMVEEACEDLAGVSASQVEMHSGIQFHDGITTENIQEILIRSASDLI 73 Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 + PNY V AR LL LR++V K + +++ LY + +E L Sbjct: 74 SLDNPNYQYVAARLLLFGLRKQVFNKNVWKDGMPSAYDV-ALYNVTINKVYDED-----L 127 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327 + D D V + N + ++RD+ F Y GL+ + D+Y + +G E PQ ++ +AM Sbjct: 128 LDKYSDEDWVKVNNMIDHDRDYLFTYAGLRQVVDKYLVQDRSSGEIYETPQYMYLFIAMT 187 Query: 328 LALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 L +++ +YN +S TP + T Q +SC L D L IF Sbjct: 188 LFADYPISQRLDYVRRYYNAISKHKINIPTPIMAGVRTTLRQFASCVLIDSDDTLDSIFT 247 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + G+G + +RG+ + I G K GVIPFLK T Q G R Sbjct: 248 SDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVKHTGVIPFLKKFEATVRCCTQNGIRG 307 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 G+ + WH ++E+ + L+ N G + R ++ + I LF +R N +LFSP Sbjct: 308 GSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFISNGEISLFSPH 367 Query: 506 EVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 +V L+D +G + F+ Y YER + V RK I A L+ +L ETG ++ Sbjct: 368 DVPGLYDAFGTDRFDELYVGYER-----DTSVPRKTIGAQELFLDLLKERAETGRVYVMN 422 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQF 616 D CN S + V+ SNLC EITL + + E A+C L +IN A Sbjct: 423 IDHCNSHSSFKD--KVNMSNLCQEITLPTDPLHQIDGNGEIALCILSAIN-----AGKLK 475 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + D+L AVR L+ +ID + ++ A+ S R++G+G +G L + Y Sbjct: 476 NLDELEELCDLAVRGLEELIDYQNYPVKAAEVSTKNRRSLGIGYIGLAHYLAKQGVKYDD 535 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 P+A ++ E E F+ + +S E+A+E+GA F + + G+ PID+ ++V DE+ Sbjct: 536 PQAWQLVHELTESFQFYLLKSSNEIAKEKGACGYFDRTKYSDGILPIDTYK--SDV-DEI 592 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 N+ + W+ L+ ++T G+R+S A P+ + + + + I+P L VK + Sbjct: 593 VPNKLNH-DWETLRSEIRTFGLRHSTLSAQMPSESSSVVSNETNGIEPPRDYLSVKKSKK 651 Query: 797 G 797 G Sbjct: 652 G 652 >gi|118580911|ref|YP_902161.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter propionicus DSM 2379] gi|118503621|gb|ABL00104.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pelobacter propionicus DSM 2379] Length = 744 Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 184/629 (29%), Positives = 298/629 (47%), Gaps = 79/629 (12%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------FYNLLSSFH 350 L +L RY NG+ +E F RVA +A + ++ A FY +++SF Sbjct: 18 LTVLEKRYLRRGPNGTTLETAADMFRRVADTIAAADRSFDETADTAGLGDTFYRMMTSFE 77 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 78 FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFSRLRPA 137 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F++V + + QGG R+GA A L H D+ +F+ + Sbjct: 138 NDMVSSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIVDFIMCKA--- 194 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D+++ ++ N + + + FM+ V ++ +TL +P N ++ Sbjct: 195 -DQKQLNNFNISVGLTEKFMQAVERDEEYTLVNP------------------RNGKQHGT 235 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF++I A W E G P I F D N +P VG + S+N C E L Sbjct: 236 LNARKVFQRIVKQA-W--------ENGEPGIVFLDRLNRDNPTPQVGEIESTNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL A D+++L T+R AV LDNVI+ N + +++ Sbjct: 287 LPYES----CNLGSINLGKFVAEGAIDWNRLKETVRNAVHFLDNVIEANSYPLQQIHDMT 342 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 H +R IGLG+MG+ L LL IPY+SPEAV++ + M+FI+ AS EL + RG++ + Sbjct: 343 HGNRKIGLGVMGWADMLILLGIPYSSPEAVKLGTKVMKFINDEGRLASRELGKVRGSFPN 402 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F GS +D ++D MRN+ IAPT Sbjct: 403 FTGSTFD--------------IKDAEP--------------------MRNATVTTIAPTG 428 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDG 829 TI+ I S ++P + Y+++ M + V VN K+R + E+++ + H G Sbjct: 429 TISIIANASSGVEPLFAVSYLRTVMDKNVLVEVNPHFERIAKERGFYSESLMKRIAEH-G 487 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888 ++ I +P D++++ TA +I P I+ + Q D A S + + + + + ++ + Sbjct: 488 TVQGIPEVPQDVQEMFVTAHDISPNDHIQMQAAFQLHTDNAVSKTVNFPNSATIEDVENV 547 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 YR A+ G K R S ST K Sbjct: 548 YRLAYQTGCKGVTIYRDGSRDEQVLSTAK 576 >gi|297568305|ref|YP_003689649.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurivibrio alkaliphilus AHT2] gi|296924220|gb|ADH85030.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurivibrio alkaliphilus AHT2] Length = 755 Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 174/611 (28%), Positives = 285/611 (46%), Gaps = 80/611 (13%) Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNL 345 F + +L RY G +E PQ RVA +A E + E A+EFY L Sbjct: 21 FSANAMTVLKRRYLKKDEQGKVLESPQRMLWRVASTIANSERLYDATADTEALAMEFYRL 80 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++ FM ++PTL N+G + QLS+CF+ + D + IF A+++ A++ + GG G ++ Sbjct: 81 MAELDFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSFS 140 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R +H T G S G + F+ V + + QGG R+GA A L H D+ +F+ + Sbjct: 141 RIRPKNDVVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIKV 200 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D H+ N + I D FM+ + +N + L +P Sbjct: 201 K----SDLDVLHNFNLSVAITDEFMRALAENGDYALINP--------------------- 235 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 GEI R +A L+R+++ + +G P + F D N +P G + S+N C Sbjct: 236 ----RNGEI--VRYQNAAKLFRQIVKQAWLSGEPGVVFIDRINAENPTPEAGEIESTNPC 289 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + + DY++L + TAV LDNV+DIN + + + Sbjct: 290 GEQPLLPYES----CNLGSINLANMVKDGKLDYERLGYCVDTAVHFLDNVVDINNYPLPE 345 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ +R IGLG+MGF L L IPY+S EAVE+A+ M FI A+ AS+ L + R Sbjct: 346 IEQVTKQNRKIGLGVMGFADLLVQLEIPYSSQEAVELAEALMRFIDERALKASIALGKSR 405 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ +F S++ + + + P +RN+ Sbjct: 406 GAFPNFPDSIYGR---------------------QDPKTP------------VRNATRTT 432 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ + G S ++P + +++ M D VN K+ + ++ + Sbjct: 433 IAPTGTISILAGCSSGVEPLFAVAFLRRVMDNDELFEVNPRFEKIAKEEGFYSHELVKQI 492 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 H+G++ +E IP ++I TA +I P I + Q+ + A S + + ++ Sbjct: 493 A-HNGTLAGLEEIPAKYRRIFETAHDITPENHIAIQASFQRHTNNAVSKTINFPHQATEE 551 Query: 885 LDFIYRQAWLM 895 RQA+L+ Sbjct: 552 E---VRQAYLL 559 >gi|325265978|ref|ZP_08132664.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella denitrificans ATCC 33394] gi|324982616|gb|EGC18242.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella denitrificans ATCC 33394] Length = 758 Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 196/673 (29%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L N ++ +++ A +GL +VS V +++ Y+G+ D+ +I Sbjct: 6 LKVTKRDGRLEPINLDKIHRVLDWAAAGLDNVSVSQVELKSHIQFYNGIRTEDIHETIIK 65 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +E P+Y + AR + LR+ + Y+ P H R E G Sbjct: 66 SAADLISEETPDYQYLAARLAIFHLRK-IAYGEYQPPHLFDHVR----------RMTEMG 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R + E + L + +ERD F Y ++ L +Y + + E PQ + Sbjct: 115 KYDRHILEDYSKEEFDELNQYINHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFLY 174 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VAM L K + + FY+ +S F TP + SG R P Q SSC L Sbjct: 175 ILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIM--SGVRTPTRQFSSCVLIECD 232 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 233 DSLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 292 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ +N Sbjct: 293 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIKNQ 352 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP+EV L++ + EFE Y YE+ E R +SA L+ ++ Sbjct: 353 NITLFSPNEVPGLYEAFFADQDEFERLYTQYEQD----ESIRKRTLSASDLFSILMQERA 408 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG ++ D CN SP V V SNLC EI L N + E A+C L + Sbjct: 409 GTGRVYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAF 468 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A N+F + LA AVR LD ++D + I A K+ R +G+G++ + Sbjct: 469 NLGAISDLNEF--EPLAD---LAVRALDALLDYQDYPIPAAYKATMNRRTLGIGVINYAY 523 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A+ + + E + +H + AS+ LA+E GA F + + QG+ PID+ Sbjct: 524 YLAKNGVKYSDGSAINLTHRTFEAMQYHLLKASMNLAKEYGACPLFNETTYAQGILPIDT 583 Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L + DE L W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 584 YKADLDKFCDE-----PLHLDWEGLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEP 638 Query: 785 SYQNLYVKSNMSG 797 + VK++ G Sbjct: 639 PRGLVTVKASKDG 651 >gi|154498792|ref|ZP_02037170.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC 29799] gi|150272182|gb|EDM99386.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC 29799] Length = 784 Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 169/575 (29%), Positives = 270/575 (46%), Gaps = 78/575 (13%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A FYN+++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K G Sbjct: 56 ASRFYNMMTGLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAIKNAALIHKSGG 115 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G ++ +R G+ ++ T G + G I F+KV N AV QGG R+GA L H D Sbjct: 116 GTGFSFSRLRPRGSTVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRVDHPD 175 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+ + +D + + N + I + FM+ V + L P Sbjct: 176 ILDFITCK----NDTKEITNFNISVGITEKFMQAVENGGSYELVDP-------------- 217 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 KV ++A ++ K+++ ++TG P I F D N +P G Sbjct: 218 -------------ATHKVTGTLNAREVFEKIVSSAWQTGEPGIIFLDRLNRDNPCPQQGE 264 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634 + S+N C E L CNLGSINL+ H D DKL +TIRTAV LDN Sbjct: 265 IESTNPCGEQPLLPYE----ACNLGSINLVTHLKEEDGRWVLDKDKLTATIRTAVHFLDN 320 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VI++N + + + + R IGLG+MGF L + IPY S + V +A E ME ++ Sbjct: 321 VIEVNKYPLPEIDAMTRSTRKIGLGVMGFADMLLYMGIPYNSDQGVAMAREVMELVNTIG 380 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 S LAQ RGA+ F S + G PI Sbjct: 381 HEESQALAQVRGAFPLFDESTYRNGK-PI------------------------------- 408 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQR 813 RN+ IAPT T++ I GVS ++P + Y+++ M + N L N L R Sbjct: 409 ----RNATVTTIAPTGTLSIIAGVSSGVEPVFAYAYIRNVMDNTHLIETNQILKNVLLSR 464 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 L+ E ++ + GS+ +++ IP+D+K++ A ++ P+W ++ + Q + D A S Sbjct: 465 GLYSEELMRKI-VEQGSLAHVDGIPEDIKRVFVCAHDVSPIWHVKMQAAFQAYTDNAVSK 523 Query: 874 NL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + + + + +++ +Y A+ +G K T R S Sbjct: 524 TVNFPNSATKEEVAEVYTLAYKLGCKGTTIYRDGS 558 >gi|148264309|ref|YP_001231015.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter uraniireducens Rf4] gi|146397809|gb|ABQ26442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter uraniireducens Rf4] Length = 742 Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 176/620 (28%), Positives = 295/620 (47%), Gaps = 81/620 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350 L +L RY G +E P F RVA +A+ +++A +FY ++++F Sbjct: 17 LTVLEKRYLKRDKEGKVLETPVDMFRRVAESIAVANARFDQKADLAALADKFYAMMTAFE 76 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 77 FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFEAVKYTALIHKSGGGTGFSFSRLRPA 136 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F++V + + QGG R+GA L H D+ +F+ + Sbjct: 137 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMCKA--- 193 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D+R+ ++ N + I + FMK V + + + +P R + Sbjct: 194 -DQRQLNNFNISVGITEAFMKAVDADTDYNIVNP----------------------RSGE 230 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 + I RK+ + +++ +E G P I F D N +P H+G + S+N C E L Sbjct: 231 KAGILNARKV-----FNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 285 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL N + ++++L I+ AV LDNVI++N + +E+ Sbjct: 286 LPYES----CNLGSINLGKMVQNGEVNWERLKEVIQLAVNFLDNVIEVNNYPLEQIDTMT 341 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 ++R IGLG+MG+ L LL IPY S +A+E+ ++ M+FI+ +ASVELA+ RG + + Sbjct: 342 RSNRKIGLGVMGWADMLILLGIPYNSMKAIELGEKVMKFINDEGHAASVELAKTRGTFPN 401 Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 FKGS++D G PI RN+ IAPT Sbjct: 402 FKGSVFDAPGKGPI-----------------------------------RNATVTTIAPT 426 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S ++P + +V+ M + + VN K + + E ++ + H Sbjct: 427 GTISIIANASSGVEPLFAVSFVRQVMDKNILLEVNPIFEEIAKAQGFYSEELMKKIAEH- 485 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 G++ +I IP+ ++ I TA +I P I + QK+ D A S + + + + + ++ Sbjct: 486 GTVHDIPEIPEAVRNIFVTAHDITPEVHIAMQAAFQKYTDNAVSKTVNFPNSATFEDVEK 545 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +YR A+ K R S Sbjct: 546 VYRLAYESNCKGVTIYRDGS 565 >gi|288931372|ref|YP_003435432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ferroglobus placidus DSM 10642] gi|288893620|gb|ADC65157.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ferroglobus placidus DSM 10642] Length = 756 Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 180/588 (30%), Positives = 286/588 (48%), Gaps = 82/588 (13%) Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCS 354 +L RY L + G+ IE P+ RVA +A E + + A +F+ ++ FM + Sbjct: 10 VLKKRYLLKDDKGNVIETPEQMLWRVANAIAEAEEKYGNDPDYWAKKFFEIMDRQEFMPN 69 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+GT QLS+CF+ V D + GIF AL + A + K GG G ++ +R G + Sbjct: 70 SPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFSRIRPKGDIV 129 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + + QGG+R+GA L H D+EEF+ + G R Sbjct: 130 KSTKGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLSVHHPDIEEFITAKWEEGVLR- 188 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + N + + D FM+ + + + L +P GE Sbjct: 189 ---NFNISVAVTDKFMEALKNDEDYELINPRT-------------------------GE- 219 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 V +K+SA ++ ++ + G P + F D N +P HVG++ ++N C E L Sbjct: 220 -VVKKVSARKIFNLIVEGAWRNGEPGLIFIDEINRHNPTPHVGMIEATNPCGEQPLLPYE 278 Query: 595 EETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 CNLGSINL + F N + F++++L + A R LDNVID+N + I + +K Sbjct: 279 S----CNLGSINL-SKFVNEKEGDFEWERLREVVHIATRFLDNVIDVNSYPIPEIEKMTK 333 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+MG+ AL L IPY S EAV +A++ M+FI + AS LA+ERG + ++ Sbjct: 334 GNRKIGLGVMGWADALFKLKIPYDSEEAVALAEKVMKFIQEESHKASQMLAEERGVFPNW 393 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 KGS+W++ + I MRN+ IAPT T Sbjct: 394 KGSVWEK-----------------------------------RGIKMRNATTTTIAPTGT 418 Query: 772 IANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 I+ I G S I+P + Y ++N+ +F +N LK+ L+ E +I + +G Sbjct: 419 ISIIAGCSSGIEPVFALAYKRTNILDGEEFFEINPIFERTLKEIGLYREDIIERVA-EEG 477 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 SI I IP+ ++++ A +I W + + QK+ D A S + L Sbjct: 478 SIQRIGEIPEAVRRVFKCALDIPAEWHVRMQAAFQKYTDNAVSKTINL 525 >gi|90409250|ref|ZP_01217355.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas sp. CNPT3] gi|90309648|gb|EAS37828.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas sp. CNPT3] Length = 757 Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 222/799 (27%), Positives = 345/799 (43%), Gaps = 91/799 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+ + +G+ + +++ ++ A GL++VS + ++ YDG+ +D+ +I Sbjct: 4 KIFVTKRNGSTECLDLEKIHRVITWASEGLENVSVSQIELNSHIQFYDGIRTNDIHETII 63 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + A + LR++ + P H +Y +E+ Sbjct: 64 KAAADLISEDSPDYQYLAAHLAIFHLRKKAYRR-FTPPSVFEHVSKMVSKGKYDAHLLED 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 K E M F + ++RD F Y ++ L +Y + + G E PQ Sbjct: 123 YTKKEF--EKMEKF--------IDHKRDLTFSYAAVKQLEGKYLVQNRVTGEIYESPQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L +K+ R FY+ +S+F TP + +G R P Q SSC L Sbjct: 173 YLLVAACL-FSNYDKKIRLDYVQRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I A G+G + +R LG+HI G G IPF K Sbjct: 230 ADDSLDSINAAASSIVKYVSQRAGIGINAGRIRALGSHIRGGEAFHTGCIPFYKHFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G D R ++ + LF +R+ Sbjct: 290 KSCSQGGVRGGAATIFYPLWHLEVESLLVLKNNRGIDSNRVRHLDYGVQLSRLFYQRLID 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 TLFSP +V L+D + + EFE Y YE G+ + + ISAV L+ ++ Sbjct: 350 KKDITLFSPSDVPGLYDAFFEDQDEFERLYTLYE-----GDDSIRQNSISAVNLFSLLMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602 TG +I D CN SP V + SNLC EI L + E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLRHIMDEEGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 ++NL A + D+L AVR LDN++D + I AK S+ R +G+G++ Sbjct: 465 SALNLGAIKS-----LDELEPLSELAVRALDNLLDYQDYPIIAAKNSSMARRTLGIGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + + E I F+ + AS +LA+ERGA F + + QG+ P Sbjct: 520 YAYYLAKNGVKYSDGSANNLTHRTFEAIQFYLLKASNKLAKERGACPKFNETRYSQGILP 579 Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ID+ + + DE L W+ L+K + G+RNS A+ P+ T + I + Sbjct: 580 IDTYKKSIDSICDE-----KYHLDWETLRKDIVKHGLRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I+P + +K++ G VV F LWD IP++ Sbjct: 635 IEPPRGFISIKASKDGILKQVVPEFEKYRENYELLWD-------------------IPNN 675 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAW 893 I+ QK+IDQA S N D P+ K L A+ Sbjct: 676 KGYINLVGI-------------MQKFIDQAISANTNYDPKRFPNEKVSMTTLLGDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATSVE 912 MGLKT YY +R S E Sbjct: 723 KMGLKTLYYHNTRDGASDE 741 >gi|326783147|ref|YP_004323544.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] gi|310005565|gb|ADO99953.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] Length = 766 Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 198/671 (29%), Positives = 310/671 (46%), Gaps = 47/671 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G S N ++ +VE AC GL VS+ V + +DG+ S ++ L+ Sbjct: 5 INVIKRNGDKDSLNLAKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIKTSQIQEILVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY V +R LL LR+ L Y+ H +C + + + I E Sbjct: 65 SASDLISLEYPNYQYVASRLLLFDLRK-ALNDHYEDHPPILEHVKKCADLDVYDKTIIEK 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 E + + + Y RD+ F Y G++ + D+Y + +G E PQ + Sbjct: 124 YSEDEWKE---------IDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + +A+ L + KEKR +YN +S TP + +G R P Q +SC L V Sbjct: 175 IMIALTL-FQRYPKEKRLDYVRRYYNAISKHKINIPTPVM--AGVRTPLRQFASCVLVDV 231 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L IF + G+G + +RG+ + I G + GVIPFLK T Sbjct: 232 DDTLDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVR 291 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF R N Sbjct: 292 CCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMAN 351 Query: 497 AGWTLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554 +LFSP +V L+D +G +F+ Y YE AD V RK I L+ +L Sbjct: 352 QEISLFSPHDVPRLYDTFGTPDFDELYLQYE--ADES---VPRKTIGGYELFNNLLKERS 406 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSIN 606 ETG +I D CN S + V+ SNLC EITL + + E A+C L +IN Sbjct: 407 ETGRIYIMNIDHCN--SHSSFLDKVNMSNLCQEITLPTEPINHIDDPNGEIALCILSAIN 464 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + D++ AVR L+ +ID + +E AK+S R++G+G +G Sbjct: 465 V-----GKITQLDQMDELCDLAVRALEELIDYMQYPVEAAKRSTLARRSLGIGYIGLAHY 519 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L + Y PEA ++ + E +H + AS LA+E+GA F+ + + GV PID+ Sbjct: 520 LAKNGVKYDDPEAWKLVHDLTESFQYHLLKASNTLAKEKGACEGFRHTKYSNGVLPIDTY 579 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 EV DE+ N+ + W L+ + G+R+S A P+ + + + + I+P Sbjct: 580 K--KEV-DEIVPNKLN-YDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPR 635 Query: 787 QNLYVKSNMSG 797 L VK + G Sbjct: 636 DFLSVKKSKKG 646 >gi|241668403|ref|ZP_04755981.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876936|ref|ZP_05249646.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842957|gb|EET21371.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 590 Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 190/652 (29%), Positives = 292/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL D+ +D Q+L + Y L S PQ F R ++ + + +R Sbjct: 6 YLGIDIDISKDRELSEQAQQLLTNYYCLENEPS----PQYAFARASVAYSFGDINLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ S FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EF+ +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A LW +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDTIKARKLWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L ++P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L +E+G G+ Sbjct: 379 RIKEQAVEETLILGREKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKYLER 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + D++K + TA E+D W++ +RQK + Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQKHLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G +I++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNIFF--PAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|187931832|ref|YP_001891817.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. mediasiatica FSC147] gi|187712741|gb|ACD31038.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 590 Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQTVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|33519929|ref|NP_878761.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Blochmannia floridanus] gi|33504275|emb|CAD83167.1| ribonucleoside-diphosphate reductase 1 alpha chain [Candidatus Blochmannia floridanus] Length = 761 Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 211/789 (26%), Positives = 354/789 (44%), Gaps = 87/789 (11%) Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPN 215 N ++ ++ A GL+ +S V ++ Y+G+ SD++ +I ++ LI ++EP+ Sbjct: 17 INLDKIHRVINWAAKGLEKISVSQVELRSHIQFYNGIKTSDIQETIIKAAADLISQEEPD 76 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 Y + AR + LR++ +P K +H + + + ++ + H+ + Sbjct: 77 YQYLAARLTVFHLRKKAYGQF--EPPKLYNHVLHLVKIGKY----DKNLVNDYNHKEFEE 130 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET 333 D + + RD F Y ++ L +Y + + G E Q ++ +A L K Sbjct: 131 MDTF-----IDHWRDMNFSYAAIKQLEGKYLVQNRVTGKIYESAQFLYILIAACLFAKYP 185 Query: 334 E--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQE 389 E + K FYN +S+F +TP + +G R P Q SSC L D+L I Sbjct: 186 EHIRMKYIKNFYNAISTFKISLATPIM--AGVRTPTRQFSSCVLIECDDNLDSINATSSA 243 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 G+G + +R +G+ I G IPF K + +QGG R GA Sbjct: 244 IVKYVAQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAAT 303 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 + WH+++E L L+ N G D R ++ I L +R+ TLFSP +V D Sbjct: 304 LFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLITGKYITLFSPSDVPD 363 Query: 510 LHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L++ + +FE Y YE+ + RKI ++ L+ M+ TG +I D Sbjct: 364 LYENFFSDQNKFEYLYHKYEQNHNIRH----RKIKSIELFSLMMQERASTGRIYIQNADH 419 Query: 567 CNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFD 617 CN SP + + SNLC EITL N + E A+C L ++NL NN D Sbjct: 420 CNSHSPFNSALAPIRQSNLCLEITLPTKPLNNINDINGEIALCTLSALNLGN--INNLQD 477 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +LA I +R LD ++D + I A+ S R++G+G++ + L + Y+ Sbjct: 478 LSELADLI---IRALDALLDYQKYPIHAAQHSAINRRSLGIGVINYAYYLAKNKVRYSDG 534 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A + + E I +H + AS LA+E+GA FK + + QG+ PID+ + D++ Sbjct: 535 SANTLTHRTFEAIQYHLLKASNNLAKEKGACIWFKDTTYSQGILPIDT---YKKDLDDI- 590 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 +N W+ L+K +K G+RNS A+ P+ T + I + I+P L +K++ +G Sbjct: 591 INEPLHYDWEHLRKSIKQYGLRNSTVSALMPSETSSQIANATNGIEPPRGYLSIKASKNG 650 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 L+Q +I D K + + +IP++ + Sbjct: 651 I-----------LRQ-------VIPDFKQLASNYELLWQIPNNQGYLKLVGI-------- 684 Query: 858 ESASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSA 908 QK+IDQ+ S NL D G K+ D +Y A+ +G+KT YY +R Sbjct: 685 -----MQKFIDQSISTNLNYDPNRFPGSKVPIKQLIADLLY--AYKLGIKTLYYHNTRDG 737 Query: 909 TSVEKSTLK 917 +S + TL+ Sbjct: 738 SSETQETLQ 746 >gi|189425377|ref|YP_001952554.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter lovleyi SZ] gi|189421636|gb|ACD96034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter lovleyi SZ] Length = 745 Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 181/620 (29%), Positives = 292/620 (47%), Gaps = 81/620 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFH 350 L +L RY +G +E P F RVA +A K+ + +K A FY ++ SF Sbjct: 18 LTVLEKRYLKRDTSGKPLETPADMFRRVAETIAEPDKKFDKKADVKKLADRFYEMIVSFD 77 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 78 FLPNSPTLMNAGRELGQLSACFVLPVGDSIEEIFDAVKFTAMIHKSGGGTGFSFSRLRPA 137 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G I F++V + + QGG R+GA L H ++ +F+ + Sbjct: 138 NDLVKTTTGVSSGPISFMRVFDTATETIKQGGTRRGANMGILRVDHPNIMDFIMCKA--- 194 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D++ ++ N + + + FM+ V ++ + L +P + S + L + Sbjct: 195 -DQKLFNNFNISVGLTEKFMEAVERDEEYDLLNPRDKSKMGTLNAR-------------- 239 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF++I + +E G P I F D N +P HVG + S+N C E L Sbjct: 240 ----KVFQRI---------VNQAWENGEPGIIFLDRLNRDNPTPHVGEIESTNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + D+ +L I AV LDNVI+ N + +++ Sbjct: 287 LPYES----CNLGSINLGRFVSEGAIDWSRLKGVIHDAVHFLDNVIEANKYPLQQIHDMT 342 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 H++R IGLG+MG+ L LL IPY S EAV++ + M+FI+ +AS EL Q+RG++ + Sbjct: 343 HSNRKIGLGVMGWADMLILLGIPYNSDEAVKLGKKVMQFINDEGHAASRELGQKRGSFPN 402 Query: 711 FKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 F GS +D +G P RN+ IAPT Sbjct: 403 FTGSTFDKKGALP-----------------------------------QRNATVTTIAPT 427 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S ++P + YVK+ M G V VN K+R + ++ + H Sbjct: 428 GTISMIANASSGVEPLFAISYVKNVMDGTKLVEVNPTFEQLAKERGFYSAELMEKIAEH- 486 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 GS+ +++ +P D++++ TA +I P I+ + Q D A S + + + + + ++ Sbjct: 487 GSVHDLDEVPADVRRVFVTAHDITPEDHIQMQAAFQYHTDNAVSKTVNFPNTATIEDVEN 546 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y A+ G K R S Sbjct: 547 VYMLAYKTGCKGVTIYRDGS 566 >gi|332678272|gb|AEE87401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Francisella cf. novicida Fx1] Length = 590 Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|206889365|ref|YP_002249440.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206890598|ref|YP_002249390.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741303|gb|ACI20360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742536|gb|ACI21593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] Length = 584 Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 174/611 (28%), Positives = 300/611 (49%), Gaps = 78/611 (12%) Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLLSSFHFMCS 354 +L RY L + G IE P+ F RV+ +A E +K + E F+ L+SS F+ + Sbjct: 10 VLEIRYLLKNEKGEPIENPEQLFQRVSSYIAQAEKIYKKNSFEWEEKFHELISSLRFLPN 69 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +P L N+G QL++CF+ + D + IF L++ A++ + GG G +++ +R G + Sbjct: 70 SPALMNAGKPKAQLAACFVLPIEDSIESIFKTLKDAALILQSGGGTGFNFSSLRPKGDVV 129 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + + + QGG R+GA L H D+ EF+ +++ Sbjct: 130 RSTGGVASGPVSFMKIFDKASDIIKQGGARRGANMGVLRVDHPDIFEFIRIKRIES---- 185 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + N + + D FM+ + +N + L +P KE Sbjct: 186 -LSNFNISVAVTDSFMEALFKNDYFPLINPRT---------KE----------------- 218 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 V RK+ A ++ +++ +ETG P + F D N +P H+G + S+N C E L Sbjct: 219 -VVRKVKAKDIFDEIVESAWETGDPGVIFIDTINRSNPTPHIGQIDSTNPCGEQPLLPYE 277 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 C LGS+NL + + D+++L ++TA R LD+ ID+ + + + +K + +R Sbjct: 278 ----ACILGSLNLSKYVKEGKIDFERLEHDVKTATRFLDDAIDVTHYPVPEVEKMHKGNR 333 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MG+ L L IPY +A+ +A++ M+FIS + AS ELAQERG + +FKGS Sbjct: 334 KIGLGIMGWADCLVELGIPYNHKKALALAEQVMQFISEKSHKASQELAQERGVFPNFKGS 393 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +W++ K I MRN+ IAPT TI+ Sbjct: 394 VWEK-----------------------------------KGIPMRNATTTTIAPTGTISI 418 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S I+P + Y + + +F ++N +L+ +++ + E I+ L+ G++ + Sbjct: 419 IADCSSGIEPYFLLAYKQRILDTEFEIINKYLIEIAQKQGFYSEDFINQLR-QKGTLRGM 477 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAW 893 + +P +K++ TA EI P I+ + QK+ D A S + L + + K+ + I+ A+ Sbjct: 478 KEVPLRIKRLFKTALEITPEEHIQMQASFQKYTDNAVSKTINLSQRTRKEDVARIFILAY 537 Query: 894 LMGLKTTYYLR 904 GLK R Sbjct: 538 KKGLKGITIFR 548 >gi|167627844|ref|YP_001678344.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597845|gb|ABZ87843.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 590 Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 190/652 (29%), Positives = 292/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL D+ +D Q+L + Y L S PQ F R ++ + + +R Sbjct: 6 YLGIDIDISKDRELSEQAQQLLTNYYCLENEPS----PQYAFARASVAYSFGDINLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ S FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EF+ +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A LW +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDTIKARKLWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L ++P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L +E+G G+ Sbjct: 379 RIKEQAVEETLILGREKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKYLER 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + D++K + TA E+D W++ +RQK + Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQKHLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G +I++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNIFF--PAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|118497573|ref|YP_898623.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. novicida U112] gi|195536269|ref|ZP_03079276.1| ribonucleotide reductase, barrel domain, putative [Francisella tularensis subsp. novicida FTE] gi|208779371|ref|ZP_03246717.1| ribonucleotide reductase, barrel domain, putative [Francisella novicida FTG] gi|254372934|ref|ZP_04988423.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. novicida GA99-3549] gi|118423479|gb|ABK89869.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella novicida U112] gi|151570661|gb|EDN36315.1| ribonucleoside-diphosphate reductase [Francisella novicida GA99-3549] gi|194372746|gb|EDX27457.1| ribonucleotide reductase, barrel domain, putative [Francisella tularensis subsp. novicida FTE] gi|208745171|gb|EDZ91469.1| ribonucleotide reductase, barrel domain, putative [Francisella novicida FTG] Length = 590 Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|89256332|ref|YP_513694.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica LVS] gi|115314780|ref|YP_763503.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica OSU18] gi|156502406|ref|YP_001428471.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010838|ref|ZP_02275769.1| ribonucleoside-diphosphate reductase alpha chain [Francisella tularensis subsp. holarctica FSC200] gi|254367667|ref|ZP_04983688.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. holarctica 257] gi|290952875|ref|ZP_06557496.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica URFT1] gi|295313920|ref|ZP_06804485.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica URFT1] gi|89144163|emb|CAJ79425.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. holarctica LVS] gi|115129679|gb|ABI82866.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica OSU18] gi|134253478|gb|EBA52572.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. holarctica 257] gi|156253009|gb|ABU61515.1| ribonucleoside-diphosphate reductase alpha chain [Francisella tularensis subsp. holarctica FTNF002-00] Length = 590 Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|254374387|ref|ZP_04989869.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548] gi|151572107|gb|EDN37761.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548] Length = 590 Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSNVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|255514004|gb|EET90268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 762 Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 194/658 (29%), Positives = 318/658 (48%), Gaps = 97/658 (14%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVE--FYNLLSSF 349 L +L RY L +G E P+ F RV+ +A E ++ E A+E FY+ +++F Sbjct: 119 LIVLASRYLLKGPDGKIAESPKQLFTRVSHYIAAAEKKFGKSDDETNALEMEFYDAITNF 178 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 FM ++PTL N+GT+ QLS+CF+ V D + IF A++ A++ + GG G ++ +R Sbjct: 179 KFMPNSPTLMNAGTKLGQLSACFVLPVGDSIVEIFDAVKYAAIIHQSGGGTGFSFSRLRP 238 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 + T G + G + F+KV + V QGGKR+GA L H + +F+ ++N Sbjct: 239 TNDMVKSTGGVASGPVSFMKVFDIATEQVKQGGKRRGANMGILRVDHPSILDFIVAKENE 298 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G R + N + I D FMK + N ++L +P R Sbjct: 299 GTLR----NFNISVAITDEFMKALEANRDYSLVNP----------------------RNG 332 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGVVHSSNLCTE 587 KV K++A A+W ++TM ++TG P + F D N +P +G V S+N C E Sbjct: 333 -----KVVGKLNARAVWNLIITMAWKTGDPGLVFLDRINSSYSNPVPTLGPVESTNPCGE 387 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTI 643 L CNLGSIN+ N D+D+L R VR LDNVI+ N + + Sbjct: 388 QPLYPYDS----CNLGSINMAKMLKKNDGQYDIDWDELKRITRMGVRFLDNVIESNTYPL 443 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ + R IGLG+MG+ L L I Y S EA+ +A++ M FI+ +A S ELA+ Sbjct: 444 KEIEDVTKKIRRIGLGIMGWADMLIKLGIRYDSNEALMLAEKVMSFITENARKMSEELAE 503 Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG + +FK S+W + G P +RNS Sbjct: 504 ERGPFPAFKDSIWYKLGYKP-----------------------------------LRNST 528 Query: 763 CMAIAPTATIANIC-GVSQSIDPSYQNLYVKS---NMSGDFTVVNSFLVNELKQRDLWDE 818 IAPT TI+ I G SQ I+P + +Y+++ ++ + VN+ + + + + Sbjct: 529 VTTIAPTGTISIIAGGASQGIEPIFSVVYMRNVHESLGSNLIEVNNEFEAMAIENNFYSD 588 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877 ++ L SI ++E IP +++++ TA++I P W + + QK++D A S + + Sbjct: 589 ELMKKLAGR-VSIQDVEEIPQEIRRLFVTAYDIAPEWHVRMQAAFQKYVDNAVSKTINFP 647 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + ++ Y A+ +G K R S+ SV+ L+ V+ + +T+P+S T Sbjct: 648 SWATPQDIEKAYVLAYKLGCKGITVYRD-SSKSVQ--VLQSVEQQKT---LTEPSSKT 699 Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 VIKR+ FD +KI A+ KA+ +V + ++ +N T V + K Sbjct: 5 VIKRDDSKVDFDRTKIENAVFKAYKSVYDSNVKEA-ELRKRAENSTTDIVKEIEATGKKE 63 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +E+IQD VE LM + + Y+LYR +++++RA Sbjct: 64 --IRVEEIQDIVEKVLMLK-DQTVAKSYILYRHKKAEIRA 100 >gi|225850412|ref|YP_002730646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Persephonella marina EX-H1] gi|225646207|gb|ACO04393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Persephonella marina EX-H1] Length = 847 Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 172/633 (27%), Positives = 307/633 (48%), Gaps = 68/633 (10%) Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCST 355 GL+ +YDR N R+++P F ++ + + E R + ++Y+++ FM +T Sbjct: 199 GLKRVYDRLN---NERRMKIP---FSKLLKMIEKGDFESYGREIDQYYSIMVEKKFMPNT 252 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N G +CF+ + D + I L+ A++ K GG G +++ +R G I Sbjct: 253 PVLVNFGNPLGMGMACFVLDMEDSIESIMETLKRAALIFKAGGGCGYNFSKLRPKGDFIS 312 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T+GKS G I F+ + + + QGG R+GA L + H D+EEF+ +K + Sbjct: 313 TTHGKSSGPIAFMTLYDKMTDVIKQGGVRRGANMGILNSDHPDIEEFIVAKKGN----VQ 368 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 + N + ++ + F +N + L +P + K Sbjct: 369 LTNFNISVFLKEDFWDYYRENKPYPLINPRDG---------------------------K 401 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594 V++ ++ L+ ++ +E+ P + F D N +P + G + ++N C E+ L + Sbjct: 402 VWKYVNPRNLFDTIVYEGWESAEPGLLFDDNINRYNPFLETFGRIQATNPCGEVLLYPNE 461 Query: 595 EETAVCNLGSINLLA----HFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 C+LGSINL A ++ N + D+D L T+R A R LDNV+DIN + ++ Sbjct: 462 S----CDLGSINLWAFIKEYYDGNGRKVEVDWDGLEKTVRIATRFLDNVLDINKYPFKEI 517 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 +K +R IGLG+MG L L IPY S + + MEF+++++ S++LA+ERG Sbjct: 518 EKETLKNRKIGLGIMGLADFLFELEIPYNSEDGRRWMERVMEFVNYYSKEESIQLAKERG 577 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + S+ S + +G PI + L WD+L ++K G+RN+ I Sbjct: 578 KFPSYNKSFYRKGKLPIRG----------FEEKESWNLDWDKLIDKIKKHGLRNAFTTVI 627 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ I G + I+P + +Y K G F V+ +++ ++D+ +I D+ Sbjct: 628 APTGSISMIAGTTSGIEPIFALVYEKKVTVGTFYYVDPVFEKTMEREGIFDDTLIKDVSK 687 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 ++GSI +I+ IP+ KK+ TA +I +++ + QKW D + S + E + + Sbjct: 688 NEGSIQDIKYIPEKWKKVFVTAMDISAEDHVKALASVQKWTDSSVSKTINFPEDATVE-- 745 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 ++A+L+ +YL + T ++KGV Sbjct: 746 -DMKRAYLLA----HYLGCKGLTVYRYKSIKGV 773 Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 7/105 (6%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++ KR+G + F+P KI+ AI KA AV K S + + ++++ V L + K Sbjct: 4 KIRKRDGRIVPFNPEKITNAIWKAMQAVGEKDFSTA-------EKISKEVVRELERTLKP 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 I +E IQD VE L+++G ++ + Y+LYR++R+++R + Sbjct: 57 GEIPDVEQIQDIVERKLIEAGLARVAKAYILYRQKRAEIRKEKQQ 101 >gi|322832010|ref|YP_004212037.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp. Y9602] gi|321167211|gb|ADW72910.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp. Y9602] Length = 760 Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 218/803 (27%), Positives = 348/803 (43%), Gaps = 89/803 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVIDWAAEGLQNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ +P K R +E G Sbjct: 65 AAADLISKDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLIDQ---------VTRMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE YE YE+ A + +K+ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYEKYEQDASIRK----QKVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I+ AK+ R +G+G++ + Sbjct: 467 FNLGAIES-----LDDLEELAVLAVRALDALLDYQDYPIKAAKRGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ P+D Sbjct: 522 YYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACQWFNETTYSQGIMPVD 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE L WD L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDAICDE-----PLHLDWDTLRENIKTYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 637 PPRGHISIKASKDG---ILRQVVPEYERLKDQYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAWLM 895 ++ QK+IDQA S N D PS K+L A+ Sbjct: 678 ------------YLQLVGVMQKFIDQAISSNTNYD-PSRFPNSKVPMKQLLKDLLTAYKF 724 Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918 G+KT YY +R + +K Sbjct: 725 GVKTLYYQNTRDGADDVQEDMKA 747 >gi|206900775|ref|YP_002251097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus thermophilum H-6-12] gi|206739878|gb|ACI18936.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus thermophilum H-6-12] Length = 751 Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 183/626 (29%), Positives = 294/626 (46%), Gaps = 83/626 (13%) Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSF 349 L IL RY G+ IE P+ F RVA +A + + + A++ FY+++ S Sbjct: 10 ALMILEKRYLKKDEKGNVIETPEEMFERVAETIAKVDLIYNPKADLEAIKNTFYDMMVSL 69 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N+G QLS+CF+ + D L IF L+ A++ + GG G ++ +R Sbjct: 70 EFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTGFSFSKLRP 129 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G + T G + G + F+KV + + QGG R+GA L H D+EEF+ + Sbjct: 130 KGDIVKTTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRIDHPDIEEFITCKDQE 189 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + N + I D FM+ V ++ + L +P N E Sbjct: 190 G----VLSNFNISVAITDSFMEAVLKDEDFPLINP------------------RNKE--- 224 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 V RK+ A L+ ++ ++ G P + F D N ++P VG + S+N C E Sbjct: 225 ------VVRKVKARDLFDLIVKQAWKNGEPGVVFIDEINRKNPTPEVGEIESTNPCGEQP 278 Query: 590 LNSSSEETAVCNLGSINL---LAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 L CNLGSINL L + D+DKL T+ AV LDNVID N + ++ Sbjct: 279 LLPFES----CNLGSINLGKMLKRVGEKYEIDWDKLKITVHNAVHFLDNVIDANFYPLKP 334 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ +R IGLG+MGF L L +PY + EA +IA+ M FI A AS +LA+ER Sbjct: 335 IEEMTKANRKIGLGVMGFYDLLVRLEVPYNTKEARDIAENIMSFIQREASEASQKLAEER 394 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G + + WD+ ++ +GL +RN+ Sbjct: 395 GVFPN-----WDKSIY--KDMGL----------------------------KLRNATLTT 419 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPT +I+ I S I+P + + + G++ V L + D++ E +I + Sbjct: 420 IAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKEDIYSEDLIEKI- 478 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KK 884 +G+I +++ IP+ LK++ TA +IDP + + QK++D A S + L E + + Sbjct: 479 VQEGTIQHMDEIPERLKRLFVTALDIDPEDHVLMQAAFQKYVDNAVSKTVNLRESATLED 538 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910 + +Y A+ + LK R +S S Sbjct: 539 IRRVYLMAYDLKLKGITVYRDKSRAS 564 >gi|56707667|ref|YP_169563.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis SCHU S4] gi|110670138|ref|YP_666695.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis FSC198] gi|224456734|ref|ZP_03665207.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis MA00-2987] gi|254370175|ref|ZP_04986181.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|254874480|ref|ZP_05247190.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|56604159|emb|CAG45167.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320471|emb|CAL08550.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568419|gb|EDN34073.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|254840479|gb|EET18915.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158829|gb|ADA78220.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis NE061598] Length = 590 Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 191/652 (29%), Positives = 290/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAHR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|61806368|ref|YP_214727.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] gi|61563912|gb|AAX46967.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] Length = 768 Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 201/694 (28%), Positives = 319/694 (45%), Gaps = 43/694 (6%) Query: 141 IAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 + PK + ++ DG+ + R+ IVE AC GL VS V + +DG+ SD++ Sbjct: 1 MTPKEINVIKRDGSKAPLDLNRVHHIVEHACRGLAGVSESQVEISSGLQFFDGIKTSDIQ 60 Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 L+ S+ LI E PNY V AR LL LR++V P + H C+ R Sbjct: 61 EILVRSANDLISLEAPNYQYVAARLLLFSLRKQVYGGHPDHPTEFVEHIQSCI-----DR 115 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 + +G +L + D ++ L + ++RD+ F Y G++ + D+Y + G E Sbjct: 116 NLYDG---DILKKYTND-EITELGKYIDHDRDYLFTYAGIRQVVDKYLVQDRSTGEVFET 171 Query: 317 PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372 PQ +M +A L + + + K ++Y+ +S TP + G R P Q +SC Sbjct: 172 PQFMYMMIAATLFQDDDKFYRLKYVKKYYDAISKHKINIPTPIM--GGVRTPLRQFASCV 229 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L V D L IF + G+G + +RG+ + I G + GV+PFLK Sbjct: 230 LVDVDDTLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFE 289 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R Sbjct: 290 ATVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSVQISGLFYQR 349 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 +++ TLFSP V DL+D +G + F+ Y YE + KV R A L +L Sbjct: 350 FIEDSTITLFSPHNVPDLYDAFGTDAFDELYVKYENDNSIPK-KVVR---AQELVLDLLK 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETAVCNLGS 604 ETG +I D CN S + V SNLC EITL ++ S E A+C L + Sbjct: 406 ERAETGRLYIMNIDHCNSHSSFKD--KVSMSNLCQEITLPTTPLQHIDGSGEIALCILSA 463 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 IN+ D+L AVR LD +ID + + A++S R++G+G +G Sbjct: 464 INV-----GKLTKLDELDDLCELAVRGLDALIDYQQYPVTAAEQSTKNRRSLGIGYIGLA 518 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y S +A ++ + E F +SAS +LA E+G F + + G+ PID Sbjct: 519 HYLAKNGAKYDSQKAFDLVHKLTERFQFALLSASNQLAMEKGPCGYFGKTKYADGILPID 578 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + DE+ N S W+ L+ R+ G+R+S A P+ + + + + I+P Sbjct: 579 T---YKNDVDEIIPNDLS-CDWEFLRGRILEYGLRHSTLSAQMPSESSSIVSNATNGIEP 634 Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817 L +K + G +V S+ + LWD Sbjct: 635 PRDYLSIKKSKKGPLKQIVPSYSTLKNNYTLLWD 668 >gi|298707147|emb|CBJ29920.1| conserved unknown protein [Ectocarpus siliculosus] Length = 821 Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 199/359 (55%), Gaps = 17/359 (4%) Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 D+ WIPDLFM+RV Q+ W+L P + L + +GKEFE Y YER+ K Sbjct: 476 DLFYGLWIPDLFMERVEQDGEWSLMCPSQCPGLSECWGKEFEELYTKYEREG-----KYM 530 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 RK+ A LW +L ETG+P++ +KD CN +S +H+G + SSNLCTEI + E Sbjct: 531 RKVRAQDLWFAILDAQTETGNPYMMYKDACNRKSNHKHLGTIQSSNLCTEIVEYTDPGEV 590 Query: 598 AVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 AVCNLGS+ L + + FD+ +L + VR L+ +ID+N + +E+A+ SN HR Sbjct: 591 AVCNLGSVVLPKFVSEDGKSFDHQRLFEVTKVFVRNLNKIIDVNWYPVEEAQHSNARHRP 650 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+ G A + +P+ S A + + E + F A++AS ELA++ G Y +F+GS Sbjct: 651 MGIGVQGLADAFIKMRMPFESEGARALNRDIFETMYFAAMTASCELAEKEGPYETFEGSP 710 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 +G+F D G + R W L+ RV G+RNS +A PTA+ A I Sbjct: 711 VSKGIFQFDMWG----------ETPSDRWDWASLRTRVAKHGVRNSLLLAPMPTASTAQI 760 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 G ++ I+P NLY + +G+F VVN L +L + LW ++ + L GSI +I Sbjct: 761 LGFNECIEPYTSNLYARRVKAGEFIVVNPHLFTDLMEMGLWSPSVRNQLMASGGSIASI 819 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 26/282 (9%) Query: 122 REER-SDVRAAQSHSKSDAPI---------APKLKIMMDDGTLISFNSKRLEMIVEEACS 171 +EER D R QS S + AP + ++ DG ++ + C Sbjct: 140 KEERDEDGRLQQSPSSEEEAFLLEEGERGGAPSMHVVKRDGRREPVMFDKITARIRRLCW 199 Query: 172 GLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR 229 GL + + +V + + +Y G++ +L+T + + + P+YA++ AR + L+ Sbjct: 200 GLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQ 259 Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM-DFDLVYLANDLKYE 288 R + T E+ R + G + +HE +M + DL+ ++K+E Sbjct: 260 RATSPSFAD-----TVEELHAYVDPKTGR--QAGYISDEVHEIVMKNRDLI--DAEVKHE 310 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RDF+ ++ G + L Y L + +E PQ FMR+A+G+ ++ E A E Y+L+S Sbjct: 311 RDFSLDFFGFKTLERAYLLKLGDKVMERPQYMFMRIAIGIHGEDLEA---AFETYHLMSE 367 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCF-LTTVPDDLYGIFGALQE 389 F+ ++PTLF++GT PQLSSCF LTT D + GI+ L++ Sbjct: 368 KWFIHASPTLFHAGTCQPQLSSCFLLTTKEDSIAGIYDTLKQ 409 >gi|331035508|gb|AEC53065.1| ribonucleotide-diphosphate reductase subunit A [Synechococcus phage S-CRM01] Length = 770 Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 190/674 (28%), Positives = 309/674 (45%), Gaps = 44/674 (6%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ +VE AC GL VS + ++ YDG++ D++ LI S+ LI E PNY Sbjct: 26 KIHTMVEAACDGLSRVSPSQIEIQSQLQFYDGITTEDIQATLIRSAADLISLENPNYQYA 85 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR LL LR+ ++Y K + + Q Y I+ V + D + Sbjct: 86 AARLLLFSLRK----SIYHKMWDSWSLQDQIAYG------IDNNVYDPAILTYYTDEEFE 135 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK--ETEK 335 L N + ++RDF F Y ++ +YD+Y + G E PQ +M A K + + Sbjct: 136 ILNNYIDHDRDFLFTYAAMRQVYDKYLVQDRSTGKVYETPQFCYMLNAATTFHKYPKATR 195 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 +Y+ +S + TP + T+ Q +SC L DDL IF + + Sbjct: 196 LNYVKAYYDAISKHYLNLPTPNIAGVRTKTRQYASCVLIETDDDLRSIFTSATAVGLYTS 255 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 G+G + +R LG + GVIP+LK A Q G R G A+ W Sbjct: 256 QRAGIGLNPGRIRALGDKVRNGEISHTGVIPYLKHFETAAKCTTQNGLRGGGATAHFPIW 315 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H ++++ L L+ N G + R ++ + + LF +R ++ TLFSP++V L+D + Sbjct: 316 HKEIQDILVLKNNKGTEDNRVRKLDYSIQLSSLFYQRFIDDSYITLFSPNDVPGLYDAFA 375 Query: 516 -KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 +EF+ Y YE +D ++ +I A L+ +++ ETG +I D CN S Sbjct: 376 TEEFDELYREYEANSDIPQV----RIPARQLFMELIKERAETGRIYIMNMDHCNTHS--S 429 Query: 575 HVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINL--LAHFANNQFDYDKLAST 624 + V SNLC EITL + E A+C L +IN+ + H + Q D Sbjct: 430 FLVSVFMSNLCQEITLPTRPLFDIHDIYGEIALCILAAINVGKIRHLHDMQHLCD----- 484 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 AVR LD +ID + + A+ S + R++G+G +G L + Y +A+ Sbjct: 485 --LAVRALDELIDYQEYPLVAAEISTKSRRSLGVGFIGVAQYLAKKKVKYGDKQALVYMH 542 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E E + ++ + AS LA+E+GA S F + + G+ PID +V N +L Sbjct: 543 ELTEALQYYLLEASNNLAKEKGACSKFNETKYSDGLLPIDHYK--KDVDGICPPNY--KL 598 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVN 803 W+ L++++K G+RNS A P+ + + +C + I+P L VK + G +V Sbjct: 599 DWEVLREKIKVFGLRNSTLSAQMPSESSSVVCNTTNGIEPPRDYLSVKKSKKGTLKQIVP 658 Query: 804 SFLVNELKQRDLWD 817 S+ + LWD Sbjct: 659 SYGTLKNDYTLLWD 672 >gi|313668431|ref|YP_004048715.1| ribonucleotide reductase I alpha chain [Neisseria lactamica ST-640] gi|313005893|emb|CBN87349.1| ribonucleotide reductase I alpha chain [Neisseria lactamica 020-06] Length = 759 Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 192/674 (28%), Positives = 305/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + ASV LA+E GA + FK +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|221105132|ref|XP_002165620.1| PREDICTED: similar to ribonucleotide-diphosphate reductase large subunit, putative, partial [Hydra magnipapillata] Length = 416 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/378 (38%), Positives = 210/378 (55%), Gaps = 12/378 (3%) Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 R+I A LWR +L ETG P+I +KD NI+S Q+++G + SSNLC EI S ET Sbjct: 3 RQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNLGTIRSSNLCAEIIQYSDEHET 62 Query: 598 AVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 AVCNL SI L N +++DKL R AVR LD +ID N + EK K+SN H Sbjct: 63 AVCNLASICLPMFIETNNNVKIYNFDKLGKVCRVAVRNLDKIIDRNYYPTEKTKRSNLRH 122 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G G +++ +++ A E+ + E I F I S ELA++ G YS+FKG Sbjct: 123 RPMGIGAQGLADVYNIMGFGFSTHSAYELNKKIFETIYFACIDESKELAKKFGQYSTFKG 182 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S QG G D+L M W L VK G+RNS A+ PTA+ + Sbjct: 183 SPASQGQLQFHMWGF---NEDQLLMG----FDWKTLISEVKKYGLRNSLLTALMPTASTS 235 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S+ I+P N++ +S ++G+F V+N L+ +L +LW++ M + +GS+ N Sbjct: 236 QIMGNSECIEPYMSNIFKRSTLAGEFIVINKHLMKDLIHLNLWNDDMRKRIIIENGSVQN 295 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 IE IP+ LK ++ TAFE M ++ ++ R +IDQ+QSLNL++ EP L ++ Sbjct: 296 IELIPEKLKNVYETAFETKQMHIVRQSADRGIFIDQSQSLNLFMAEPDFDVLTSALFESH 355 Query: 894 LMGLKT-TYYLRSRSATS 910 +G KT YY RS A + Sbjct: 356 DIGNKTGMYYYRSLPAIN 373 >gi|134301989|ref|YP_001121958.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis WY96-3418] gi|134049766|gb|ABO46837.1| ribonucleoside-diphosphate reductase, alpha chain [Francisella tularensis subsp. tularensis WY96-3418] Length = 590 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 191/652 (29%), Positives = 290/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYAAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|270307717|ref|YP_003329775.1| ribonucleotide reductase [Dehalococcoides sp. VS] gi|270153609|gb|ACZ61447.1| ribonucleotide reductase [Dehalococcoides sp. VS] Length = 761 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 183/634 (28%), Positives = 290/634 (45%), Gaps = 84/634 (13%) Query: 311 GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 G E + F RVA +A+ E + R EFYNL++ F+ ++PTL N+G Sbjct: 41 GKPTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNLMTRLEFLPNSPTLMNAGRE 100 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLS+CF+ V D + IF A++ AM+ K GG G ++ +R + T G + G Sbjct: 101 LGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGP 160 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 + F++ + + QGG R+GA A L H D+ +F+ + G + N + Sbjct: 161 VSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFIHAKDKAG----VLTNFNLSVA 216 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 I D FM+ V A + L +P H+ GE V ++A Sbjct: 217 ITDKFMQAVKDGADYDLLNP------HN-------------------GE--VVSCLNATE 249 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 ++ K++ M ++TG P I F D N +P +G + S+N C E L CNLGS Sbjct: 250 VFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYES----CNLGS 305 Query: 605 INL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 INL + DY KL+ I++AVR LDNVID+N + + ++ R IGLG+ Sbjct: 306 INLSRMVTVSGGKSTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGV 365 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGF L L IPY S ++++A+E M F++ A S ELA ERG + +++GS++++ Sbjct: 366 MGFADMLLELGIPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSG 425 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 P MRN++C IAPT T++ I G S Sbjct: 426 RP-----------------------------------MRNASCTTIAPTGTLSIIAGCSS 450 Query: 781 SIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + + ++ + G + VN + K+ + E +I L +G+ + +PD Sbjct: 451 GIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA--EGAHLDEADVPD 508 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLK 898 + K++ TA +I P W + + QK D A S + +G+ + +Y+ A LK Sbjct: 509 EAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVADVYKMAHARNLK 568 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 R S ST K + V +PN Sbjct: 569 GITIYRDGSREDQPMSTGKAENKIETPAAVVNPN 602 >gi|217967765|ref|YP_002353271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus turgidum DSM 6724] gi|217336864|gb|ACK42657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus turgidum DSM 6724] Length = 749 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 184/626 (29%), Positives = 292/626 (46%), Gaps = 83/626 (13%) Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSF 349 L IL RY NG+ IE P+ F RVA +A + + + AV+ FY ++SS Sbjct: 10 ALMILEKRYLKKDENGNVIETPEEMFERVAETIAKVDLIYDPNADVEAVKDIFYEMMSSL 69 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N+G QLS+CF+ + D L IF L+ A++ + GG G ++ +R Sbjct: 70 EFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTGFSFSKIRP 129 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G + T G + G + F+KV + + QGG R+GA L H D+ EF+ + Sbjct: 130 KGDIVRSTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRVDHPDIWEFVTCKDQE 189 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + N + + D FM+ V + ++L +P N E Sbjct: 190 G----VLSNFNISVAVTDGFMEAVLNDEEFSLINP------------------RNKE--- 224 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 V ++I A L+ ++ ++ G P + F D N ++P VG + S+N C E Sbjct: 225 ------VVKRIRAKELFDLIVEQAWKNGEPGVIFIDEINRKNPTPEVGEIESTNPCGEQP 278 Query: 590 LNSSSEETAVCNLGSINL---LAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 L CNLGSINL L + + ++DKL +T+ AV LDNVID N + ++ Sbjct: 279 LLPFES----CNLGSINLGRMLKKVGDKYEINWDKLRTTVHNAVHFLDNVIDANFYPLKP 334 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ +R IGLG+MGF L L +PY + EA +IA+ M FI A AS ELA+ER Sbjct: 335 IEEMTKANRKIGLGVMGFYDLLIRLEVPYNTKEARDIAENIMSFIQKEAREASQELAKER 394 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G + + WD+ ++ R + +RN+ Sbjct: 395 GVFPN-----WDKSIY------------------------------RDMGLRLRNATLTT 419 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPT +I+ I S I+P + + + G++ V L + +L+ E +I + Sbjct: 420 IAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKENLYSEELIEKV- 478 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KK 884 G+I NI IP+ LK++ TA +I P + + QK++D A S + L E + + Sbjct: 479 IQKGTIQNITEIPEKLKRLFVTALDISPEDHVLMQASFQKYVDNAVSKTVNLREDATLED 538 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910 + IY A+ + LK R +S S Sbjct: 539 IRKIYLMAYELKLKGITVYRDKSRAS 564 >gi|303232582|ref|ZP_07319268.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium vaginae PB189-T1-4] gi|302481369|gb|EFL44443.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium vaginae PB189-T1-4] Length = 766 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 208/753 (27%), Positives = 338/753 (44%), Gaps = 109/753 (14%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKY---------------------ERDFAFEYL 296 RYIE+ + R++H + L Y+ Y E F F L Sbjct: 64 RYIEQEIMPRIMHFESLPARLAYMVQHNYYDHTVINAYSTPFIQKLYAIAAEEHFEFTSL 123 Query: 297 -GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 G Y Y LH + G++I + F RV M E+ A + + + F + Sbjct: 124 MGAMKFYIAYALHTDDGAQIL--EQFEDRVVMCAMFLANGNEELAKQLVKDMMANRFQPA 181 Query: 355 TPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 TPT N+G R + SC+L V D + I + + L+K GG+ T +R A Sbjct: 182 TPTFLNAGKKRRGEYISCYLLRVEDTMESIARGISTSLQLSKRGGGVALCLTNLRETAAP 241 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G ++ GV+P +K+ DT NQ G+R+GA YL H D+ FLD ++ D++ Sbjct: 242 IKGFENQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEK 301 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R ++ IPD+ + QN LFSP +V +++ + ++ E Y+ Sbjct: 302 VRIKSLSLGVVIPDVTFRLAQQNKDMALFSPYDVKREYNVALSDLSVS-EKYDELCANPR 360 Query: 534 I-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---- 588 I K + ISA ++ + + FE+G+P+I F+D N +P + G + SNLC+EI Sbjct: 361 IHKTY--ISARKFFQTIAELQFESGYPYIMFEDTVNYCNPHKRAGRIVMSNLCSEIAQVS 418 Query: 589 TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---ID 637 T +S +E+ + CNLGSIN+ A D S +R A+ LD V D Sbjct: 419 TPSSYTEDLSFTHVGVDVCCNLGSINI----ARAMDDAPHFGSLVRHAIFALDRVSRSSD 474 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + C KK N+ + A+GLG M L HI Y SPEAV+ D +++HA SA Sbjct: 475 LAC--APSVKKGNNLNHAVGLGAMNLHGFLATHHIYYNSPEAVDFVDMFFYAMAYHAFSA 532 Query: 698 SVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVR---DELAMNRTSRLPWDEL 749 S +LAQ G++S F S + G + D+ VR EL + +R W L Sbjct: 533 SCDLAQTYGSFSGFSNSEYADGSYFDKYTGADTAPSTPRVRALLAELGLTLPTRDDWVSL 592 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++K G+ N++ MA+APT +I+ + + S+ P +V+ Sbjct: 593 VEKIKVRGLANAHLMAVAPTGSISYLSSCTPSLQP---------------------VVSA 631 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFEIDPMWLIESASRR 863 ++ R +G IG + +P D+ + A+E+ +I + Sbjct: 632 VETRK-------------EGKIGRV-YVPAYNITNDNYRYYQDGAYEVGYEAIINIVAAA 677 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y A+ K+ YY+R R + L+G + Sbjct: 678 QKHVDQAISLTLFMTSQATTRDLNKAYIYAFKKRCKSIYYVRIR------QDVLEGSEHL 731 Query: 923 LN--AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 N + + ++ +S + CT +EC+VC Sbjct: 732 ENDEVIAGSADGAAGNSSSVNFVCTGSSECQVC 764 >gi|254169182|ref|ZP_04876017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197621840|gb|EDY34420.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 768 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 178/593 (30%), Positives = 301/593 (50%), Gaps = 78/593 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E+R EFY+++ + +F+ ++PTL NS TR QLS+CF+ VPD + GIF A++ AM+ K Sbjct: 215 EERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYAAMIHK 274 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG G ++ +R G + T G + G + F++V + + QGGKR+GA L Sbjct: 275 SGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMGVLSVH 334 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EF+ + + + + + N + + D FM + ++ + L +P G Sbjct: 335 HPDILEFITSKDS---ENKVLSNFNISVAVMDEFMDALLRDDYYPLRNPRN--------G 383 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +E ++I A +W ++T ++TG P + F D N + P +H Sbjct: 384 EEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEVNRKHPVKH 424 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +G + S+N C E L CNLGSINL N + + KL I A+ LDNV Sbjct: 425 LGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWHKLRKVIHIAIHFLDNV 480 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + + + ++ R IGLG+MG+ L L IPY S EAVE+A++ M+FI+ + Sbjct: 481 IDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFINEESH 540 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS++LA++RG + +++GS W W K Sbjct: 541 RASMKLAEKRGVFPAWEGSEW-----------------------------WK------KG 565 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRD 814 + +RN+ IAPT TI+ I G S SI+P + +YV+ + G + +N K+ Sbjct: 566 MKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEIAKKGG 625 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872 + E ++ ++ GSI N++ +P+D+K+I TA +I P W + + QK++D A ++ Sbjct: 626 FYSEDLMLEIA-KSGSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDNAVSKT 683 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923 +NL D + + ++ +Y A+ + K T Y +S+ ++K+ K ++G L Sbjct: 684 VNLRYD-ATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKAD-KAIEGIL 734 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 33 KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92 KR+G +D +I+ AI KAF+ E + D + + E+ + + I Sbjct: 7 KRSGDYVLYDRKRIANAIKKAFL--ETGEVDTPEEIADELSKIVEERIQKYE-------I 57 Query: 93 VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 +E IQD+VE LM+ + + + Y++YRE R VR A+ Sbjct: 58 PSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAK 97 >gi|309379221|emb|CBX22178.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria lactamica Y92-1009] Length = 759 Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 194/674 (28%), Positives = 307/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTGAGKYDRHILED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + ASV LA+E GA + FK +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|222056106|ref|YP_002538468.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. FRC-32] gi|221565395|gb|ACM21367.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. FRC-32] Length = 742 Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 184/647 (28%), Positives = 302/647 (46%), Gaps = 82/647 (12%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350 + +L RY +G +E P F RVA +A + +K+A +F+ +++SF Sbjct: 17 VTVLEKRYLKRDKDGKVLESPVDMFRRVAESIAAADARFDKKADIAALADKFFAMMTSFE 76 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 77 FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKHTALIHKSGGGTGFSFSRLRPA 136 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F++V + + QGG R+GA L H D+ +F+ + Sbjct: 137 NDMVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMCKA--- 193 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D+R+ ++ N + + + FMK V + + L +P + E+ Sbjct: 194 -DQRQLNNFNISVGLTEEFMKAVDADREYNLINP------------------RSGEKAGS 234 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF +I A W E G P I F D N +P H+G + S+N C E L Sbjct: 235 LNARKVFNRIVKQA-W--------ENGEPGIIFIDRLNKDNPTPHIGQIESTNPCGEQPL 285 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + + ++ +L I AV LDNVI++N + +E+ Sbjct: 286 LPYES----CNLGSINLGKMVEHGEINWQRLKEVILLAVNFLDNVIEVNNYPLEQIDAMT 341 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLG+MG+ L LL IPY S EA+E+ ++ M+FI+ +ASV+LA+ RG + + Sbjct: 342 RANRKIGLGVMGWADLLILLGIPYNSKEAIELGEKIMKFINDEGHAASVQLAKVRGPFPN 401 Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 FKGS++D+ G+ PI RN+ IAPT Sbjct: 402 FKGSIFDKPGMEPI-----------------------------------RNATVTTIAPT 426 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S ++P + +++ M + + VN K+ + E ++ + H Sbjct: 427 GTISIIANASSGVEPLFAVSFIRQVMDKNILLEVNPIFEETAKKEGFYSEELMQKIAEH- 485 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 G++ +I IP+ ++ + TA +I P I + QK D A S + + + + ++++ Sbjct: 486 GTVHDIPEIPEQIRNVFVTAHDITPEVHISMQAAFQKHTDNAVSKTVNFPNSATIEEVEK 545 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +YR A+ K R S ST K D +PV D S Sbjct: 546 VYRLAYETNCKGVTIYRDGSRDEQVLSTGKK-DEAPKTLPVADEKRS 591 >gi|218289142|ref|ZP_03493378.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] gi|218240725|gb|EED07904.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] Length = 574 Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/456 (33%), Positives = 238/456 (52%), Gaps = 29/456 (6%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG + + ++ + C + + + ++ + + DG+ S++ I ++ + Sbjct: 45 DGRIEPLSLDKIFAFLRRGCEAAEGCDPERLAADVWPQLRDGMRTSEIARVAIQAA---V 101 Query: 211 EK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE---G 263 EK EP + V AR LL YK+ + + Y +++ +E G Sbjct: 102 EKTSVAEPGWQFVAARLLL--------LDAYKQASRNRGYR-HLGYGDFYQLIVELERIG 152 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322 + E + ++ LA +K ERD Y+GL+ L DRY + +++ +E+PQ FM Sbjct: 153 RYGTYIREHYSEDEIAELAAYIKPERDHLLNYVGLKQLLDRYAIRNLDNGIMELPQELFM 212 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 V+M LA+KE +K A FY++LS+ +TPTL N+ QLSSCF+ DDL Sbjct: 213 GVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPTLSNARKPFHQLSSCFIDMPEDDLVS 272 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + A ++K+ GG+G +R G+ I G S GV+P+++ N+TAV+ NQ G Sbjct: 273 IYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNHPGASGGVVPWIRNFNNTAVSCNQLG 332 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R GA YL+ WH D+ +FL LR N GD+R + HD+ IPDLFM+RV + W LF Sbjct: 333 MRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAHDIFPGVCIPDLFMRRVEERGMWYLF 392 Query: 503 SPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P EV L D +G+EFE YE + + +I A+ + ++++ FETG Sbjct: 393 CPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLPRV----EIPAIEIMKRIMQSAFETG 448 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 P+I F+D N +P +H G+V+ SNLCTEI N S Sbjct: 449 TPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNMS 484 >gi|121534255|ref|ZP_01666079.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosinus carboxydivorans Nor1] gi|121307025|gb|EAX47943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosinus carboxydivorans Nor1] Length = 566 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 167/570 (29%), Positives = 262/570 (45%), Gaps = 79/570 (13%) Query: 315 EMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E P+ F RVA +A E +++ E+Y +++ F+ ++P L N+G + Q+++ Sbjct: 19 ETPEKMFWRVAEYVAEAEALYGGDRQAACQEYYAIMAGLEFLPNSPALMNAGRKQAQMAA 78 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ V D L IF L+ A++ + GG G ++ +R G I GTNGK+ G + FL V Sbjct: 79 CFVLPVDDSLGDIFDTLKHAALIHQSGGGTGFSFSRLRPKGDRIAGTNGKASGPVSFLHV 138 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + V QG R+GA A L H D+EEF+ ++ DR ++ N + I D FM Sbjct: 139 YDAATEVVRQGAVRRGANMAVLRVDHPDIEEFITAKR----DRTVLNNFNLSVGITDAFM 194 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 V Q+ + L P + R++SA L+ M Sbjct: 195 VAVAQDRSFALVHPRTG---------------------------RTVRQVSARRLFDLMA 227 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 M +E G P + F D N +P H+G + N C+E L C LGS+NL Sbjct: 228 AMAWENGEPGLFFLDTVNRANPTPHLGNFEAPNPCSEQPLLPYES----CVLGSVNLAKM 283 Query: 611 FA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 A DYD+L+ +R AVR LDN+ID N + + ++ R IGLG+MG Sbjct: 284 VAADGQHLDYDRLSVVVRRAVRFLDNIIDRNWYPLPAVAEATLRTRKIGLGIMGLADLFI 343 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L IPY S +AV + + M FI+ A S LA ERG + ++ GS+++ + P+ Sbjct: 344 MLDIPYGSKQAVLLTADIMRFITAEARRESARLAAERGPFPAYPGSIYESSIGPV----- 398 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 RN+ IAPT TI+ I S I+P + Sbjct: 399 ------------------------------RNATVTTIAPTGTISIIANCSSGIEPLFAL 428 Query: 789 LYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + + + G +N ++ L +R L + +K H GS+ N +P +K++ AT Sbjct: 429 AFSRHVLGGQVLASINPTVLAYLDKRGLLTTDVEKTIK-HQGSVRNTG-LPYHVKQVLAT 486 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 A EI P+W + + Q++ D A S + L Sbjct: 487 AHEIRPIWHVAQLAAAQRYTDNAVSKTVNL 516 >gi|261392426|emb|CAX49971.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide reductase) [Neisseria meningitidis 8013] Length = 759 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|77919448|ref|YP_357263.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter carbinolicus DSM 2380] gi|77545531|gb|ABA89093.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Pelobacter carbinolicus DSM 2380] Length = 744 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 179/620 (28%), Positives = 287/620 (46%), Gaps = 80/620 (12%) Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350 L +L RY RI E P F RVA +A ET + A FY+ ++ Sbjct: 16 LTVLKRRYLKRDQDGRILEDPADMFRRVADAVADAETRLASGQDATSLADRFYDAMTCLE 75 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A+++ A++ K GG G ++ +R Sbjct: 76 FLPNSPTLMNAGRELGQLSACFVLPVDDSMESIFEAIKQTALIHKSGGGTGFSFSRIRPA 135 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G I F+KV + + QGG R+GA L H D+ +F+ ++K Sbjct: 136 NDVVLSTKGVSSGPISFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMVKK--- 192 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D + N + + + FMK V + + L +P L Sbjct: 193 -DLTVLTNFNLSVGLTEAFMKAVEEGQEYDLLNPRTGEPL-------------------- 231 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +K+ A ++ +++ M + +G P I F D N +P HVG + ++N C E L Sbjct: 232 -------KKLDARKVFDRIIDMAWTSGEPGIIFLDRLNRDNPTPHVGEIEATNPCGEQPL 284 Query: 591 NSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 CNLGSINL + + D++KL T++ VR LDNVI+IN + + + + Sbjct: 285 LPYES----CNLGSINLSRMVTGDGEVDWEKLRDTVQLGVRFLDNVIEINRYPLPQISEM 340 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 ++R IGLG+MG+ L LL +PY S +A+ +AD+ M FI+ A + SV+LA++RGA+ Sbjct: 341 TLSNRKIGLGIMGWADMLILLGLPYNSSQAIALADKLMNFITTEARATSVKLAEQRGAFP 400 Query: 710 SFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F GS +DQ G P +RN+ C IAP Sbjct: 401 NFPGSSYDQAGDGP-----------------------------------LRNATCTTIAP 425 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T TI+ I S ++P + Y++ M D V L + ++ + + Sbjct: 426 TGTISIIANTSSGVEPIFAVSYIRQVMDNDVLVEVHPLFEAIAHKEGFYSPELMKAIAEK 485 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 G+I + IP+ ++K+ TA +I P I + QK D A S + + + +++ Sbjct: 486 GTIQGFDEIPEKVRKLFVTAHDITPEDHIHMQAAFQKHTDNAVSKTVNFPHSATREEVAE 545 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +YR A+ G K R S Sbjct: 546 VYRLAYKEGCKGVTIYRDGS 565 >gi|261400677|ref|ZP_05986802.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria lactamica ATCC 23970] gi|269209587|gb|EEZ76042.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria lactamica ATCC 23970] Length = 759 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 192/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNSYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGA--LNN---LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E + ++ + ASV LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|308389412|gb|ADO31732.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis alpha710] Length = 759 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 191/674 (28%), Positives = 304/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|261380738|ref|ZP_05985311.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria subflava NJ9703] gi|284796456|gb|EFC51803.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria subflava NJ9703] Length = 759 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 195/680 (28%), Positives = 309/680 (45%), Gaps = 55/680 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A +K+ DG L N ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 4 ATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI ++ P+Y + AR + LR+ + ++ P H + + Sbjct: 64 IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLYDHVK----------KLT 112 Query: 261 EEGVKAR--LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316 E G R + S +FD L + + RD F Y ++ L +Y + +R E Sbjct: 113 EAGKYDRHIIADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYET 170 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371 PQ ++ VAM L + KE R FY+ +S+F TP + SG R P Q SSC Sbjct: 171 PQFLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSC 227 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 228 VLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMF 287 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA + WHI+ E L L+ N G + R ++ I L Sbjct: 288 QAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYT 347 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 R+ + TLFSP+EV L+D + EFE Y YE+ + + R + A L+ Sbjct: 348 RLIKGGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFST 403 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 ++ TG +I D CN SP HV VH SNLC EI L N + E A+ Sbjct: 404 LMQERAGTGRIYIQNVDHCNTHSPFDPHVAPVHQSNLCMEIALPTKPLDNINDPNGEIAL 463 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A NN + ++LA VR LD ++D + + A+ + R +G+G Sbjct: 464 CTLSAFNLGA--LNNLDELEELAD---LTVRALDALLDYQDYPVAAARTATMNRRTLGIG 518 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG Sbjct: 519 VINYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQG 578 Query: 720 VFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 PID+ L A + L + W+ L+ + G+RNS A+ P+ T + I Sbjct: 579 KLPIDTYKKDLDAVCSEPLHYD------WESLRAGIVKYGLRNSTLTALMPSETSSQIAN 632 Query: 778 VSQSIDPSYQNLYVKSNMSG 797 + I+P + VK++ G Sbjct: 633 ATNGIEPPRGLVSVKASKDG 652 >gi|161870165|ref|YP_001599335.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis 053442] gi|161595718|gb|ABX73378.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis 053442] Length = 759 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGNLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|305663588|ref|YP_003859876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ignisphaera aggregans DSM 17230] gi|304378157|gb|ADM27996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ignisphaera aggregans DSM 17230] Length = 877 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 212/845 (25%), Positives = 385/845 (45%), Gaps = 131/845 (15%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE-SDLE 199 I +K++ DG++ FN +++ + + +AC L D + + + E SE S LE Sbjct: 15 IISTVKVIKRDGSIEPFNLEKVFISISKACKKLCDRNEILSIIEILVGEIKERSEISTLE 74 Query: 200 TALIFSSRTLIEK---EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 + R +I K P + +V R+ L K+ ++V Y K Sbjct: 75 ISDRIE-RIMISKAISNPKWFEVVKRYELGKIYKDV----YGK----------------- 112 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRI 314 S ++FD +D + ++IL RY + G I Sbjct: 113 --------------RSDVEFD----------PKDLKLTFSAIKILGSRYLIKDPETGRFI 148 Query: 315 EMPQAFFMRVAMGLALKE--------------TEKEKRAVE-FYNLLSSFHFMCSTPTLF 359 E PQ F RV+ +A +E ++ K E FY LLS F+ ++PTL Sbjct: 149 ETPQMLFRRVSRAIATQEYKYCIQQNNNEDLCKDRVKYWEELFYELLSDQRFLPNSPTLM 208 Query: 360 NSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 N+GT+ LS+CF+ V D + GI+ A++ A++ + GG G D++ +R G + Sbjct: 209 NAGTKLGILSACFVIPVRDSIVTPDGEGIYDAVRAQAIIFQQGGGTGFDFSELRPEGDIV 268 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+++ + + QGGKR+GA L WH D+E+F+D + D Sbjct: 269 STTGGIASGPLSFMRMFDVNTEVIKQGGKRRGANMGVLHVWHADIEKFIDAKSGQLKDVN 328 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL--YGKEFEIA------YENYE 526 + N + D F++ V L +P + + DL K + I YE++ Sbjct: 329 -LQNFNISVGAYDYFIEAVMNGGSIPLINPRKTNLRRDLGNNSKFYAITRARHYLYEDWV 387 Query: 527 RQADRGEIK----------------------------VFRKISAVALWRKMLTMLFETGH 558 ++ E++ + ++A L+ K++ +++G Sbjct: 388 QEVIINELESKGGSIWLDETILLTIDEAMIIAQEEKAIVGYVNAKKLFEKIVRNAWDSGD 447 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD- 617 P + F D N R P ++G ++++N C E L CNLGSINL + +++ Sbjct: 448 PGLLFIDTINRRHPVWYLGKINATNPCGEQPLLPWES----CNLGSINLEKYVEYDEYGK 503 Query: 618 ----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + +LA IR VR +DN+ID+ + + +++ R IG+G+MG+ L L IP Sbjct: 504 PRIAWQRLAEDIRVIVRFMDNIIDVAKWPLPQLEEAVKRTRKIGIGVMGWHHMLIKLGIP 563 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLA 730 Y S +A+ +A E+I ++A AS+ELA+ERGA+ ++ + P++ + +A Sbjct: 564 YDSADALYLAYYLAEWIEYNAALASIELARERGAFPAYDPDKYRPTWLSAKPLEELLAIA 623 Query: 731 EVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + + ++ ++ W+ ++ + G+RN+ +IAPT TI+ I S SI+P Sbjct: 624 SIDAKPSKFILELLSSRPQIDWNTVEVLRRKYGIRNAALTSIAPTGTISIIANASPSIEP 683 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + + G F V+ + L++ +L +I ++ GSI +I +P +K + Sbjct: 684 IFAVAFERHVTVGKFIEVDPLFLEYLRKYELDSPELIEEIA-RRGSISDIPYMPRTIKLL 742 Query: 845 HATAFEIDPMWLIESASRRQKWI--DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 A +IDP W + + Q+W+ ++++NL E + + +Y AW++G K Sbjct: 743 FKGALDIDPKWHVLHQAVWQQWVCAGVSKTVNLRF-EATVDDVRNVYLLAWMLGCKGITV 801 Query: 903 LRSRS 907 R +S Sbjct: 802 YRDKS 806 >gi|254369309|ref|ZP_04985321.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica FSC022] gi|157122259|gb|EDO66399.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica FSC022] Length = 590 Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 190/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 YL ++ RD Q+L + Y L S PQ F R A+ + + +R Sbjct: 6 YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60 Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395 Y+ + FM ++P L N+ G + L SCFL+ VPD L G+ E L+ Sbjct: 61 --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G W+ VR + + K+ G IPF+ + VA QG RKG+ AY++ Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ + Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573 V I A +W +L + TG P++ F D N P Q Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANKALPKSQ 264 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +G+ + SNLC EI L + + TAVC L S+NL ++D K S I+ +R L Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318 Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 DNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E + Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ ++ L E+G G+ Sbjct: 379 RIKEQALEETLILGAEKGEAPDMVGT---------------------------------- 404 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN++ +AIAP A + I S SI+P N + G N +L Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL++ E + S++ + GS+ ++ + +LK++ TA E+D WL+ RQK++ Sbjct: 457 ELEKIGKNTEEVWSNIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516 Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QSLN++ P+G ++++ AW G K YYLR+ ++ E + K Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566 >gi|218768315|ref|YP_002342827.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis Z2491] gi|121052323|emb|CAM08653.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis Z2491] gi|319410560|emb|CBY90928.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide reductase) [Neisseria meningitidis WUE 2594] Length = 759 Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|221105290|ref|XP_002167438.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 323 Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 123/305 (40%), Positives = 189/305 (61%), Gaps = 11/305 (3%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSR---IEMPQAFFMRVAMGLALKETEKEK 337 L N ++Y+RD+ F+Y G++ L Y ++ ++ IE PQ MRVA+G+ ++ + Sbjct: 27 LQNSIRYDRDYLFDYFGIKTLERSYLYKLHFTKFKIIERPQHMIMRVAIGIHGEDIDS-- 84 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 +E Y+L+S +F +TPTLFN+GTR Q+SSCFL + D++ IF A+++ A +K++ Sbjct: 85 -VIETYDLISQKYFTHATPTLFNAGTRRAQMSSCFLQAIDDNIESIFEAVRDIAFTSKWA 143 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G + +R G+ I GTNG + GV+P + N A +NQGG+R G++ YLE H Sbjct: 144 GGIGVHMSALRCRGSLIRGTNGIASGVVPLCILLNKLAKYINQGGRRNGSIACYLEPHHA 203 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ +F DLRKNTG+D R D+ A W+P LFMKRV + W+L PD+ L+ ++ +E Sbjct: 204 DIFDFCDLRKNTGNDDDRARDLYLALWVPSLFMKRVRDDLTWSLMCPDQCPGLNKVHSEE 263 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 + YE YE + K R+I A LWR +L ETG P+I +KD NI+S Q+++G Sbjct: 264 YVKLYEMYESEG-----KYVRQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNLG 318 Query: 578 VVHSS 582 + SS Sbjct: 319 TIRSS 323 >gi|225075857|ref|ZP_03719056.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens NRL30031/H210] gi|224952803|gb|EEG34012.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens NRL30031/H210] Length = 759 Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 192/679 (28%), Positives = 304/679 (44%), Gaps = 53/679 (7%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A +K+ DG L N ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 4 ATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI ++ P+Y + AR + LR+ + ++ P H + + Sbjct: 64 IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLYDHVK----------KLT 112 Query: 261 EEGVKAR--LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316 E G R + S +FD L + + RD F Y ++ L +Y + +R E Sbjct: 113 EAGKYDRHIIADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYET 170 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371 PQ ++ VAM L + KE R FY+ +S+F TP + SG R P Q SSC Sbjct: 171 PQFLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSC 227 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 228 VLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMF 287 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA + WHI+ E L L+ N G + R ++ I L Sbjct: 288 QAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYT 347 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 R+ + TLFSP+EV L+D + EFE Y YE+ + + R + A L+ Sbjct: 348 RLIKGGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFST 403 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 ++ TG +I D CN SP V VH SNLC EI L N + E A+ Sbjct: 404 LMQERAGTGRIYIQNVDHCNTHSPFDPRVASVHQSNLCMEIALPTKPLDNINDAEGEIAL 463 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A D D+L VR LD ++D + + A+ + R +G+G Sbjct: 464 CTLSAFNLGA-----LNDLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIG 518 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG Sbjct: 519 VINYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQG 578 Query: 720 VFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 PID+ +D + N W+ L+ + G+RNS A+ P+ T + I Sbjct: 579 KLPIDTYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANA 633 Query: 779 SQSIDPSYQNLYVKSNMSG 797 + I+P + VK++ G Sbjct: 634 TNGIEPPRGLVSVKASKDG 652 >gi|300087825|ref|YP_003758347.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527558|gb|ADJ26026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 592 Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 183/629 (29%), Positives = 289/629 (45%), Gaps = 93/629 (14%) Query: 297 GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSF 349 L++L RY + G +E P F RVA +A E T A EFY ++S Sbjct: 16 ALRVLEKRYLRRDSRGEVVETPAELFRRVADAVASAERKYASDTSVRYIADEFYRIMSGL 75 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N+GT QLS+CF+ V D + IF A++ A + K GG G + VR Sbjct: 76 LFLPNSPTLLNAGTTSGQLSACFVLPVEDSIEAIFEAVKYTAQIHKSGGGTGFSFAHVRP 135 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 +G + G + G + + V + A V QGG R+G L H D+ +F+ + Sbjct: 136 VGDDVDGRADAATGPVALIDVFSKAADYVRQGGIRRGCNSVVLPVDHPDIMDFIKAKA-- 193 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D + + + D FM+RV + L P Sbjct: 194 --DPLSLTNFYISVAVTDDFMRRVKTGQDYPLIYPRN----------------------- 228 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 G+I + ++A A++ +++ + TG P F D N +P H+G + + C E T Sbjct: 229 --GQITGW--LNAGAVFDRIVDQAWSTGDPGFVFIDQINRANPTPHLGRIEIISGCGEQT 284 Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 L CNLGSINL + NN+ D+D L + AVR LDNVID+N I + Sbjct: 285 LLPYES----CNLGSINLAKMVKLDNNRTVVDFDTLKDVVSLAVRFLDNVIDVNKFPISR 340 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ R IGLG+MGF L+ + IPY S AV+IA E M FI A S LA+ER Sbjct: 341 IEEMTKRTRKIGLGVMGFADMLYQMGIPYNSESAVKIAREVMRFIKDEAHRTSRLLARER 400 Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G + +FKGS++D +G+ P MRN+ C Sbjct: 401 GPFPAFKGSIYDREGLEP-----------------------------------MRNAACT 425 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823 +APT T++ I G S I+P + ++V++ + G+ VN +K ++ E +++ Sbjct: 426 TVAPTGTLSIIAGCSSGIEPVFAGVFVRNILDGENLLEVNPHFEKAVKDAGVYSEELLAR 485 Query: 824 L----KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLD 878 L HD +P++++KI TA ++ P W ++ + Q++ D A S + + Sbjct: 486 LVKCNHLHDQ-----HDVPEEIRKIFVTAHQVSPEWHVKIQAAFQEFTDNAVSKTVNFAR 540 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + + ++L ++R A+ GLK R S Sbjct: 541 QATREELASVFRMAYESGLKGITVYRDDS 569 >gi|167769961|ref|ZP_02442014.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM 17241] gi|167667795|gb|EDS11925.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM 17241] Length = 761 Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 183/626 (29%), Positives = 292/626 (46%), Gaps = 85/626 (13%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALK------ETEKEKRAVEFYNLLSSFH 350 L +L RY +G IE + F RVA +A +T+ + FY ++++ Sbjct: 14 LTVLERRYLKKDEHGENIETVEQMFRRVADAIASADAAYSGKTDVAALSNRFYEMMTNLE 73 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A+++ A++ K GG G ++ +R Sbjct: 74 FLPNSPTLMNAGKELGQLSACFVLPVGDSMEEIFEAIKQAALIHKSGGGTGFSFSRLRAA 133 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + T G + G + F++V N AV QGG R+GA L H D+ EF+D +KN Sbjct: 134 GATVRSTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRIDHPDILEFIDCKKNNA 193 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D + N + I + FM+ V Q + L P + L +E Sbjct: 194 D----ITNFNISVGITEEFMQAVQQGNAYELVDPKTKQAVGQLDARE------------- 236 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 VF KI A WR G P I F D N + G + S+N C E L Sbjct: 237 -----VFDKIVESA-WR--------NGEPGIIFLDRLNRDNVVPSQGEIESTNPCGEQPL 282 Query: 591 NSSSEETAVCNLGSINLLAHFA--NNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 CNLGSINL+ N + DYDKL T+R AV LDNVID+N + + + Sbjct: 283 LPYES----CNLGSINLVNMLKCENGAYAVDYDKLGRTVRDAVHFLDNVIDVNKYPLAEI 338 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + R IGLG+MG+ L L +PY S EAV +A MEFI+ + S ELA+ RG Sbjct: 339 DVTTKQTRKIGLGVMGWSDMLAYLGVPYNSDEAVALARRVMEFITKTGRAESAELAKVRG 398 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A+ F+ S++ G +RN+ I Sbjct: 399 AFPLFEKSIYAGGT------------------------------------PLRNATVTTI 422 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLK 825 APT T++ I G S ++P + +++++ M G + VN L L+ R L+ + ++ + Sbjct: 423 APTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTEMIEVNPVLKEILEARGLYSDGLMKKIA 482 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKK 884 +GS+ +IE IP D++++ + ++ P++ + + Q++ D A S + + + + + Sbjct: 483 -AEGSLQHIEEIPADIRRVFVCSHDVSPLYHTKMQAAFQQFTDNAVSKTVNFKHDATIED 541 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910 + +Y ++ +G K R S S Sbjct: 542 VREVYMLSYELGCKGVTIYRDGSRDS 567 >gi|294496479|ref|YP_003542972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanohalophilus mahii DSM 5219] gi|292667478|gb|ADE37327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanohalophilus mahii DSM 5219] Length = 596 Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 164/586 (27%), Positives = 273/586 (46%), Gaps = 78/586 (13%) Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHF 351 G +L RY L G E P F RVA +A ++ + EK +FY +++ F Sbjct: 20 GKTLLEKRYLLRDAEGKVAEEPGELFARVAKTIARVDSRYGYDVEKTEDDFYQVMADLEF 79 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QLS+CF+ V D L IF +LQ+ +++ + GG G ++ +R G Sbjct: 80 LPNSPTLMNAGTELGQLSACFVLPVEDSLKSIFKSLQDMSLIHQSGGGTGFSFSNLRPKG 139 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + TNG + G + F+ + + + QGG+R+GA L H D+ EF+ + + Sbjct: 140 DIVGSTNGVASGPLSFMTIFDKATDVIKQGGRRRGANMGVLRVDHPDIIEFIRAK----E 195 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + + D FM+ V+Q+ + L +P R Sbjct: 196 DEELLRNFNLSVGVTDEFMEAVSQDRDYALINP----------------------RTG-- 231 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 K+ +++ A ++ +++T TG P + F D N R P +G + S+N C E+ L Sbjct: 232 ---KIEKRLKAKDVFDRIVTCACRTGDPGLLFLDEINRRHPLSTIGTIESTNPCGEVPLL 288 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 CNLGSINL D++KL T+ T V LDNVID N + + + + Sbjct: 289 PYES----CNLGSINLAQMVKEGAIDWEKLKQTVHTGVHFLDNVIDANKYPLPQIGQRTK 344 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+MGF + L L IPY E + A++ M+F ++ SVEL ++RG++ +F Sbjct: 345 QNRKIGLGVMGFAAMLARLGIPYDCREGIATAEKVMKFTQDESVQKSVELGEQRGSFPNF 404 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 S A RD A MRN+ +APT + Sbjct: 405 HRS---------------ALARDYPA--------------------MRNATVNTVAPTGS 429 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 ++ I + I+P + Y ++ M T ++ ++ + ++ ++ GS+ Sbjct: 430 LSIIANTTSGIEPMFALTYRRNVMGTRLTEIDPVFEEIARKHGFYSSQLMEEIA-GTGSL 488 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875 IP+ ++I ATA EI P W + + QK +D A+++NL Sbjct: 489 QTSPNIPEQTRRIFATALEIQPRWHVRMQAAFQKHVDNAVAKTVNL 534 >gi|241760524|ref|ZP_04758617.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria flavescens SK114] gi|241319028|gb|EER55530.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria flavescens SK114] Length = 759 Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 194/680 (28%), Positives = 307/680 (45%), Gaps = 55/680 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A +K+ DG L N ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 4 ATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI ++ P+Y + AR + LR+ + ++ P H + + Sbjct: 64 IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLYDHVK----------KLT 112 Query: 261 EEGVKAR--LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316 E G R + S +FD L + + RD F Y ++ L +Y + +R E Sbjct: 113 EAGKYDRHIIADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYET 170 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371 PQ ++ VAM L + KE R FY+ +S+F TP + SG R P Q SSC Sbjct: 171 PQFLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSC 227 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 228 VLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMF 287 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA + WHI+ E L L+ N G + R ++ I L Sbjct: 288 QAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYT 347 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 R+ + TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ Sbjct: 348 RLIKGGNITLFSPNEVPSLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFST 403 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 ++ TG +I D CN SP V VH SNLC EI L N + E A+ Sbjct: 404 LMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIAL 463 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A + D+L VR LD ++D + +E A+ + R +G+G Sbjct: 464 CTLSAFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIG 518 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG Sbjct: 519 VINYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQG 578 Query: 720 VFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 PID+ L A + L + W+ L+ + G+RNS A+ P+ T + I Sbjct: 579 KLPIDTYKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIAN 632 Query: 778 VSQSIDPSYQNLYVKSNMSG 797 + I+P + VK++ G Sbjct: 633 ATNGIEPPRGLVTVKASKDG 652 >gi|325128286|gb|EGC51170.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis N1568] Length = 753 Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 192/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 118 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 119 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 578 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 632 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 633 PPRGLVTVKASKDG 646 >gi|121635005|ref|YP_975250.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis FAM18] gi|120866711|emb|CAM10463.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis FAM18] gi|325132506|gb|EGC55199.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M6190] Length = 759 Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|206895118|ref|YP_002246867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Coprothermobacter proteolyticus DSM 5265] gi|206737735|gb|ACI16813.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Coprothermobacter proteolyticus DSM 5265] Length = 796 Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 184/631 (29%), Positives = 301/631 (47%), Gaps = 87/631 (13%) Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET-----EKEKRAVE--FYNLLSS 348 L++L RY L NG+ +E P+ RVA GLA ET ++ +VE F+++L Sbjct: 9 ALRVLEQRYLLRDENGNIVETPEQLMHRVAHGLAQIETVWGATSEQISSVEQDFFDILWK 68 Query: 349 FHFMCSTPTLFNSG-TRHPQ------LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F+ +TPTLF++G + P+ +S+C + + D + GIF L + A + + GG+G Sbjct: 69 RDFLPNTPTLFHAGLPKDPKYRGRRFMSACIVLPIEDSIDGIFKTLWDAAKIMQAGGGVG 128 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R G+ + + GKS G + F+ + + V QGGKR+GA L H D+ E Sbjct: 129 YAFSRLRPKGSLVKSSGGKSSGPVSFMHIYDVMVDVVAQGGKRRGAQMGVLNVHHPDILE 188 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+D +K + H+ N + + + F++ ++ + L +P + +L +E Sbjct: 189 FIDAKKENTSGQGPLHNFNISVAVTEEFVQAYKEDTTFKLVAPHTGEVVGELNARE---- 244 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 V KI+ A WR TG P I F D N + G + + Sbjct: 245 --------------VMHKIAENA-WR--------TGDPGIIFIDRIN-QLDYLDDGRIEA 280 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVID 637 +N C E L CNLGSINL Q+D++K TIR AVR LDNVI+ Sbjct: 281 TNPCGEQPLPPYGS----CNLGSINLKHMLKKTDSGYQWDWEKFQRTIRLAVRFLDNVIE 336 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 N + I + + R IGLG+MG+ AL LL IPY S EA+E A + F+ + A Sbjct: 337 ANDYPIPELEDYAKKARRIGLGVMGWADALSLLGIPYDSEEALEEARKVGAFLKEKSHLA 396 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ELAQERG + + S W + P Sbjct: 397 SQELAQERGVFEFYDQSKWKELGIP----------------------------------- 421 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN+ IAPT T++ + V+ I+P + + + +G F V L++ LK+R+L+ Sbjct: 422 MRNAAVTTIAPTGTLSILANVNSGIEPYFALAFERKITAGTFHEVQPTLLDVLKERELYS 481 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E ++ + ++G + ++E +P+D++ TA E+ P W + + Q+ ID + S + L Sbjct: 482 EELVQRIIENEGKLRDLEDLPEDIRNAFPTAMEVAPEWHVRMQAAWQENIDSSISKTVNL 541 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + + + ++ IY A+ +G K+ R +S Sbjct: 542 PYQSTVEDIENIYLLAYELGTKSITVYRDKS 572 >gi|254805094|ref|YP_003083315.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha14] gi|254668636|emb|CBA06263.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha14] Length = 759 Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|325144566|gb|EGC66865.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M01-240013] Length = 764 Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 197/695 (28%), Positives = 311/695 (44%), Gaps = 52/695 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 12 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 72 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 121 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 181 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 358 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 413 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 473 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 528 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816 +P + VK++ G VV F + LW Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 677 >gi|294787789|ref|ZP_06753033.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella muelleri ATCC 29453] gi|294484082|gb|EFG31765.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella muelleri ATCC 29453] Length = 758 Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 191/673 (28%), Positives = 304/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ +G L N ++ +++ A GL +VS V +++ Y+G+ D+ +I Sbjct: 6 LKVTKRNGQLEPINLDKIHRVLDWAAEGLNNVSVSQVELKSHIQFYNGIHTKDIHETIIK 65 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +E P+Y + AR + LR+ + Y P H + + G Sbjct: 66 SAADLISEETPDYQYLAARLAIFHLRK-IAYGDYTPPHLFDH----------VNKLVASG 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L + + L + +ERD F Y ++ L +Y + + E PQ + Sbjct: 115 KYDKHLLSDYTESEFNELNQYIDHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFLY 174 Query: 322 MRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VAM L K +T + FY+ +S F TP + +G R P Q SSC L Sbjct: 175 ILVAMCLFAKYPQTTRLDYVKRFYDAVSQFKISLPTPIM--AGVRTPTRQFSSCVLIECD 232 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 233 DNLDSINATTSAIVKYVSQRAGIGINAGHIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 292 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ +N Sbjct: 293 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINRLLYTRLIKNQ 352 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP+EV L++ + EFE Y YE+ E R ++A L+ ++ Sbjct: 353 NITLFSPNEVPGLYEAFFADQDEFERLYTQYEQT----ESIRKRTVAASDLFSILMQERA 408 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 409 GTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAF 468 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A N+F + LA AVR LD ++D + + AKK+ R +G+G++ + Sbjct: 469 NLGAITDVNEF--EPLAD---LAVRALDALLDYQDYPVLAAKKATMNRRTLGIGVINYAY 523 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A+ + + E + ++ + AS+ LA+E GA F + + QG+ PID+ Sbjct: 524 YLAKNGVKYSDGSAISLTHRTFEAMQYYLLKASMNLAKEYGACPLFNETTYAQGILPIDT 583 Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L + DE L W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 584 YKADLDKFCDE-----PLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEP 638 Query: 785 SYQNLYVKSNMSG 797 + VK++ G Sbjct: 639 PRGLVTVKASKDG 651 >gi|15677158|ref|NP_274311.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis MC58] gi|7226531|gb|AAF41667.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis MC58] gi|316984081|gb|EFV63059.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis H44/76] gi|325134465|gb|EGC57110.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M13399] gi|325140482|gb|EGC63003.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis CU385] gi|325205933|gb|ADZ01386.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M04-240196] Length = 759 Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 197/695 (28%), Positives = 311/695 (44%), Gaps = 52/695 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816 +P + VK++ G VV F + LW Sbjct: 638 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 672 >gi|325204294|gb|ADY99747.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M01-240355] Length = 753 Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 190/674 (28%), Positives = 304/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYIRLIKG 346 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 578 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 632 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 633 PPRGLVTVKASKDG 646 >gi|304387411|ref|ZP_07369602.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria meningitidis ATCC 13091] gi|304338504|gb|EFM04623.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria meningitidis ATCC 13091] Length = 764 Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 194/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 12 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 72 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 129 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 130 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 181 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 358 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 413 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 473 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 528 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 643 EPPRGLVTVKASKDG 657 >gi|329119973|ref|ZP_08248645.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327463886|gb|EGF10200.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 759 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 192/678 (28%), Positives = 306/678 (45%), Gaps = 51/678 (7%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ Sbjct: 4 AENLKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHET 63 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI +E P+Y + AR + LR+ + ++ P H + + Sbjct: 64 IIKAAADLISQETPDYQYLAARLAIFHLRK-IAYGQFEPPHLFDHVK----------KLT 112 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 E G R + E + L + + RD F Y ++ L +Y + +R E PQ Sbjct: 113 EAGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQ 172 Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 ++ VAM L + K+ R FY+ +S+F TP + SG R P Q SSC L Sbjct: 173 FLYVLVAMCL-FSKYPKDTRLNYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVL 229 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +RGLGA I G + G IPF K+ Sbjct: 230 IECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGAEIRGGEAQHTGCIPFFKMFQA 289 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ Sbjct: 290 AVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRL 349 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 350 IKGGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLM 405 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V VH SNLC EI L N + E A+C Sbjct: 406 QERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCT 465 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A + D+L VR LD ++D + +E A+ + R +G+G++ Sbjct: 466 LSAFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVI 520 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG Sbjct: 521 NYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKL 580 Query: 722 PIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PID+ L A + L + W+ L+ + G+RNS A+ P+ T + I + Sbjct: 581 PIDTYKKDLDAVCSEPLLCD------WESLRADIVEHGLRNSTLTALMPSETSSQIANAT 634 Query: 780 QSIDPSYQNLYVKSNMSG 797 I+P + VK++ G Sbjct: 635 NGIEPPRGLVTVKASKDG 652 >gi|297250514|ref|ZP_06864463.2| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|296838834|gb|EFH22772.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria polysaccharea ATCC 43768] Length = 764 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 195/675 (28%), Positives = 308/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 12 LKVTKRDGRLEAIDLDKIHRVVAWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + Y + R+I E Sbjct: 72 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK-KLTYAGKYDRHILED 129 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 130 Y-------SREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 181 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 358 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 413 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N E A+C L + Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 473 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 528 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 643 EPPRGLVTVKASKDG 657 >gi|227878536|ref|ZP_03996470.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] gi|227861870|gb|EEJ69455.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] Length = 722 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 188/655 (28%), Positives = 312/655 (47%), Gaps = 78/655 (11%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 85 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 321 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377 Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI T ++ +E+ + CNLGS+N+ A + DKL S + Sbjct: 378 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 433 Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +V+ L+ V D++C +IEK K+N RAIGLG M L HI Y SPEAVE Sbjct: 434 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732 I++HA S +LA++ GA+ FK S + D+ V P + E+ Sbjct: 491 TGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEI 548 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 549 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 608 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 V ++ +N+ D+ + A+E+ Sbjct: 609 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 639 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 P +I+ + QK++DQ+ SL L++ D + + L+ Y A+ + YY+R R Sbjct: 640 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 694 >gi|254670479|emb|CBA06178.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha153] Length = 759 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 194/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|83589985|ref|YP_429994.1| ribonucleotide-diphosphate reductase subunit alpha [Moorella thermoacetica ATCC 39073] gi|83572899|gb|ABC19451.1| Ribonucleotide reductase large subunit [Moorella thermoacetica ATCC 39073] Length = 765 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 183/620 (29%), Positives = 287/620 (46%), Gaps = 86/620 (13%) Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVA---------MGLALKETEKEKRAVEFYNLLSSFH 350 IL RY NG +E P+ F RVA AL E + E+ A FY L++S+ Sbjct: 10 ILEKRYLKKENGVPVETPEEMFRRVAAAVAGAERIFNPALTEAQVEEYADRFYRLMTSWD 69 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A+++ A++ K GG G ++ +R Sbjct: 70 FLPNSPTLMNAGRELGQLSACFVLPVDDSMDAIFTAVKDAALIHKSGGGTGFSFSRLRPK 129 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + + T G + G + F+KV N A+ QGG R+GA L H D+ EF+ ++N Sbjct: 130 NSPVRSTGGVASGPVSFMKVFNAATEAIKQGGTRRGANMGILRVDHPDILEFISCKENNN 189 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + + N + + FM + ++ D Y +FE Sbjct: 190 E----LTNFNISVGLTREFMDALARD---------------DYYELKFEG---------- 220 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +V++++ A ++ +++ + G P I F D N +P +G + ++N C E L Sbjct: 221 ----RVYQRLKAQEVFAEIVNHAWANGEPGIIFLDRLNEDNPTPELGEIEATNPCGEQPL 276 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGS+NL + ++DKLA T+R AVR LDNVI+IN +EK Sbjct: 277 LPYE----ACNLGSVNLANMVRDGGVNWDKLADTVRLAVRFLDNVIEINEFPLEKISVMV 332 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLG+MG+ L L +PY S EAVE+ + M FI A AS +LA ERG++ + Sbjct: 333 RGNRKIGLGVMGWADMLFQLRLPYDSEEAVELGRKVMAFIQKEAHGASRDLAGERGSFPN 392 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 S++ R +L RN+ C IAPT Sbjct: 393 IDKSIY-----------------------RGQQL--------------RNATCTTIAPTG 415 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAM-ISDLKYHD 828 TI+ I G + I+P + Y K+ + G V VN +++ ++A I + Sbjct: 416 TISMIAGTTSGIEPVFALAYTKNVLDGASLVEVNPVFQAYVEENFPPEQARSIFNRIAAG 475 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 + IE IP +++++ TA EI P W I + Q D A S + + E + + + Sbjct: 476 ARVSEIEYIPPEMRRVFVTALEISPEWHIRMQAAFQASTDNAVSKTVNFPSEATREDVRR 535 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 Y A+ +G K RS S Sbjct: 536 AYELAYQLGCKGVTVYRSGS 555 >gi|194098863|ref|YP_002001927.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae NCCP11945] gi|193934153|gb|ACF29977.1| Ribonucleoside-diphosphate reductase, alpha subunit [Neisseria gonorrhoeae NCCP11945] gi|317164438|gb|ADV07979.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae TCDC-NG08107] Length = 764 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 12 LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 72 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KITDAG 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 121 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 181 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 358 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 413 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N E A+C L + Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 473 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 528 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 643 EPPRGLVTVKASKDG 657 >gi|325138280|gb|EGC60849.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis ES14902] gi|325142422|gb|EGC64826.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis 961-5945] gi|325198445|gb|ADY93901.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis G2136] Length = 753 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 191/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 578 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 631 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 632 EPPRGLVTVKASKDG 646 >gi|59801041|ref|YP_207753.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA 1090] gi|240013943|ref|ZP_04720856.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae DGI18] gi|240121512|ref|ZP_04734474.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID24-1] gi|240128433|ref|ZP_04741094.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|268686828|ref|ZP_06153690.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|293398905|ref|ZP_06643070.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria gonorrhoeae F62] gi|59717936|gb|AAW89341.1| putative ribonucleotide reductase I alpha chain [Neisseria gonorrhoeae FA 1090] gi|268627112|gb|EEZ59512.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291610319|gb|EFF39429.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria gonorrhoeae F62] Length = 759 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKEARLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|239999149|ref|ZP_04719073.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae 35/02] gi|240080504|ref|ZP_04725047.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA19] gi|240115884|ref|ZP_04729946.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID18] gi|240123730|ref|ZP_04736686.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID332] gi|240125921|ref|ZP_04738807.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|260440301|ref|ZP_05794117.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae DGI2] gi|268594983|ref|ZP_06129150.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae 35/02] gi|268596638|ref|ZP_06130805.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA19] gi|268601558|ref|ZP_06135725.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID18] gi|268682360|ref|ZP_06149222.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID332] gi|268684518|ref|ZP_06151380.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae SK-92-679] gi|291043594|ref|ZP_06569310.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2] gi|268548372|gb|EEZ43790.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae 35/02] gi|268550426|gb|EEZ45445.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA19] gi|268585689|gb|EEZ50365.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID18] gi|268622644|gb|EEZ55044.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID332] gi|268624802|gb|EEZ57202.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae SK-92-679] gi|291012057|gb|EFE04046.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2] Length = 759 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KITDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|254478745|ref|ZP_05092114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Carboxydibrachium pacificum DSM 12653] gi|214035310|gb|EEB76015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Carboxydibrachium pacificum DSM 12653] Length = 724 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 172/579 (29%), Positives = 283/579 (48%), Gaps = 67/579 (11%) Query: 299 QILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 ++ DRY L G +E P+ F RVA +A E E+E FY ++S + F+ Sbjct: 11 KVFLDRYALKDREGKPVEKKPEEMFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGR 66 Query: 357 TLFNSGT-RHPQLSSCFLTTVP--------DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 L +GT R +CF+ V D I + + + GG+G +W+ + Sbjct: 67 ILAGAGTGREVTYFNCFVIPVEANDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTL 126 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA++ G G S G + ++ AN+ A V QGG R+ A+ L WH D+EEF+ ++K Sbjct: 127 RPRGAYVKGVGGTSSGAVSWMLAANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK 186 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D + N + + D FM+ V Q+ W L PD H Y E++ + Sbjct: 187 ----DLTKMQQANLSVAVSDAFMEAVAQDKMWKLEFPDTS---HPNYDAEWKGDLNEW-- 237 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +A V+++I A LW K++T +E+ P + F + N S ++ + S+N C E Sbjct: 238 KAKGYPTVVYKEIPARELWNKIVTAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGE 297 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + L E VCNLG+INL+A N + ++++L T++ AVR LDNV+D+ + + + K Sbjct: 298 LGL----EPYGVCNLGAINLVAFVENGRINFEELEETVKIAVRFLDNVLDLGAYVLPQNK 353 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R +GLGLMG AL L+++ Y S E+++ +E ++ I A ASVELA+E+G Sbjct: 354 EMAQKLRRVGLGLMGLADALILMNLRYGSEESLKATEEIVKRIRDAAYRASVELAKEKGP 413 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + F + +G F RLP D ++ + G+RN+ + A Sbjct: 414 FPEFVADKYLKGQF-------------------IQRLPKD-IRDEIAKYGIRNATILTQA 453 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV----------VNSFLVNELKQRDLWD 817 PT T + + GVS I+P++ YV+ + +G TV V++ V + + Sbjct: 454 PTGTTSILAGVSSGIEPNFAKEYVRKDRTGTHTVKHWLADYPAFVSAHEVTPEEHVKM-- 511 Query: 818 EAMISDLKYHDGSIGNIERIP-----DDLKKIHATAFEI 851 +A++ KY D SI +P DD+ I+ A+E+ Sbjct: 512 QAVLQ--KYIDSSISKTINLPRTATVDDIDNIYRLAYEL 548 >gi|325200081|gb|ADY95536.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis H44/76] Length = 753 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 196/695 (28%), Positives = 311/695 (44%), Gaps = 52/695 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 578 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 631 Query: 783 DPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLW 816 +P + VK++ G VV F + LW Sbjct: 632 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 666 >gi|161508075|ref|YP_001578042.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus helveticus DPC 4571] gi|160349064|gb|ABX27738.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC 4571] Length = 729 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 187/654 (28%), Positives = 310/654 (47%), Gaps = 76/654 (11%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 92 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 150 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 151 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 210 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 211 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 270 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 271 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 327 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 328 ITKE-YQNLLNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 384 Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI T ++ +E+ + CNLGS+N+ A + DKL S + Sbjct: 385 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 440 Query: 627 TAVRVLDNVI---DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +V+ L+ V D++C KK N +RAIGLG M L HI Y SPEAVE Sbjct: 441 DSVQALNRVARSSDLDCAP--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFT 498 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVR 733 I++HA S +LA++ GA+ FK S + D+ V P + E+ Sbjct: 499 GIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIV 556 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 557 AKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRK 616 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + V ++ +N+ D+ + A+E+ P Sbjct: 617 EAALGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVGP 647 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I+ + QK++DQ+ SL L+L D + + L+ Y A+ + YY+R R Sbjct: 648 NAIIDITAAAQKYVDQSISLTLFLEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 701 >gi|326784481|ref|YP_004325028.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] gi|310004514|gb|ADO98906.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] Length = 767 Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 218/798 (27%), Positives = 346/798 (43%), Gaps = 101/798 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++K++ DG + N +++ +VE AC GL VS V + +DG+ D++ LI Sbjct: 9 EIKVVKRDGEQTTLNLEKVHKMVEHACEGLAGVSESAVEINSGLQFFDGIETKDIQEILI 68 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY V AR LL LR+ V K H C I++ Sbjct: 69 RSANDLITLENPNYQYVAARLLLFGLRKSVYNGHPDKHPILKDHVENC---------IKK 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 GV + + + L + ++RDF F Y G++ + D+Y + G E PQ Sbjct: 120 GVYDGEVLAKFNEEEWEKLNGYIDHDRDFLFTYAGIRQVTDKYLVQDRSTGEIFETPQFM 179 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M +A+ L ++ +K R ++Y+ +S TP + +G R P Q +SC L Sbjct: 180 YMMIAVTL-FQDDDKFYRLEYIKKYYDAISKHKINIPTPIM--AGVRTPIRQFASCVLVD 236 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D L IF G+G + +RG+ + I G + GV+PFLK T Sbjct: 237 LDDTLDSIFSGDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKLESTV 296 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 Q G R G+ + WH ++E+ + L+ N G + R ++ + + +F +R Sbjct: 297 RCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFIT 356 Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N TLFSP +V L+D +G + F+ Y YE +D K ISA L +L Sbjct: 357 NGTITLFSPHDVPGLYDAFGSDSFDELYTQYE--SDESIPK--STISAQELILDLLKERA 412 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVC-----NL 602 ETG ++ D CN S + V SNLC EITL + + E A+C N+ Sbjct: 413 ETGRIYLMNIDHCNSHSSFKD--KVSMSNLCQEITLPTDPLQHIDGNGEIALCILSAINV 470 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 G IN L D+L AVR LD +ID + ++ A++S R++G+G +G Sbjct: 471 GKINKL----------DELDELCDLAVRGLDALIDYQQYPVKAAEQSTKNRRSLGIGFIG 520 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y SPEA ++ + E + +++S L+ E+G F + + G+ P Sbjct: 521 LAHYLAKNNAKYESPEAYDLVHKLTERFQYALLTSSNRLSMEKGPCGYFGKTKYADGILP 580 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + DE+ N S W+ L+ R+ G+RNS A P+ + + + + I Sbjct: 581 IDT---YKKDVDEIIPNDLS-CDWEFLRGRISEYGLRNSTLSAQMPSESSSVVSNATNGI 636 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P L +K + G VV S+ + LWD +PD+ Sbjct: 637 EPPRDYLSIKKSKKGPLKQVVPSYGSLKNNYTLLWD-------------------MPDNT 677 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----------GKKLDFIYR 890 I+ A QK+ DQA S N + + K L Y+ Sbjct: 678 GYINVVAI-------------MQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYK 724 Query: 891 QAWLMGLKTTYYLRSRSA 908 W KT+YY + A Sbjct: 725 YGW----KTSYYQNTYDA 738 >gi|298368553|ref|ZP_06979871.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282556|gb|EFI24043.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 759 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ + ++ P H + +Y IE+ Sbjct: 67 AAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFDHVKKLTDAGKYDRHIIED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + + RD F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 ILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 353 GNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ + R +G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID Sbjct: 524 YYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTIYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|294669613|ref|ZP_06734680.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308526|gb|EFE49769.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 759 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 192/678 (28%), Positives = 308/678 (45%), Gaps = 51/678 (7%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ Sbjct: 4 AASIKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHET 63 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI ++ P+Y + AR + LR+ + ++ P H + +Y I Sbjct: 64 IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFDHVKKLTDAGKYDRHII 122 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 E+ S +FD L + + RD F Y ++ L +Y + +R E PQ Sbjct: 123 ED--------YSQEEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQ 172 Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 ++ VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 173 FLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVL 229 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 230 IECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQA 289 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ Sbjct: 290 AVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRL 349 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 350 IKGGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLM 405 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V VH SNLC EI L N + E A+C Sbjct: 406 QERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCT 465 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A + D+L VR LD ++D + +E A+ + R +G+G++ Sbjct: 466 LSAFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVI 520 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG Sbjct: 521 NYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKL 580 Query: 722 PIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PID+ L A + L + W+ L+ + G+RNS A+ P+ T + I + Sbjct: 581 PIDTYKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIANAT 634 Query: 780 QSIDPSYQNLYVKSNMSG 797 I+P + VK++ G Sbjct: 635 NGIEPPRGLVTVKASKDG 652 >gi|240016385|ref|ZP_04722925.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA6140] gi|240113128|ref|ZP_04727618.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae MS11] gi|240118182|ref|ZP_04732244.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID1] gi|254493924|ref|ZP_05107095.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae 1291] gi|268599211|ref|ZP_06133378.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae MS11] gi|268603897|ref|ZP_06138064.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID1] gi|226512964|gb|EEH62309.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae 1291] gi|268583342|gb|EEZ48018.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae MS11] gi|268588028|gb|EEZ52704.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID1] Length = 759 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKEVRLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|332970338|gb|EGK09330.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella kingae ATCC 23330] Length = 758 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 219/792 (27%), Positives = 344/792 (43%), Gaps = 91/792 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ +G+L + N ++ +++ A L +VS V +++ Y+G+ D+ +I Sbjct: 6 LKVTKRNGSLEAINLDKIHRVLDWAAEDLNNVSVSQVEMKSHIQFYNGIRTQDIHETIIK 65 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR+ + Y P H +Y +++ Sbjct: 66 SAADLISEDTPDYQYMAARLAIFHLRK-IAYGDYTPPHLFDHVTKLTEAGKYDPHILQDY 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 +A +FD + + ++RD F Y ++ L +Y + S+ E PQ + Sbjct: 125 TRA--------EFDEI--NQYIDHDRDLTFSYAAVKQLEGKYLVQNRVSKQIYESPQFLY 174 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 M VAM L K + + FY+ +S+F TP + SG R P Q SSC L Sbjct: 175 MLVAMCLFAKYPKATRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECD 232 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 233 DSLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 292 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ +N Sbjct: 293 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLLYTRLIKNQ 352 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP+EV L++ + EFE Y YE + R +SA L+ ++ Sbjct: 353 DITLFSPNEVPGLYEAFFADQDEFERLYTQYENDPTIRK----RTMSASDLFSILMQERA 408 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 409 GTGRIYIQNVDHCNTHSPFNPKVAPVRQSNLCLEIALPTKSLNNINDENGEIALCTLSAF 468 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A N +++ LA VR LD ++D + IE A+K+ R +G+G++ + Sbjct: 469 NLGA--IENLDEFEPLAD---LTVRALDALLDYQDYPIEAARKATMNRRTLGIGVINYAY 523 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A+ + + E + ++ + ASV LA+E GA F + + QG+ PID+ Sbjct: 524 YLAKNGVKYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFGETTYSQGILPIDT 583 Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L + DE L W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 584 YKADLDKFCDE-----PLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEP 638 Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + VK++ G VV F + + LW + +DG Sbjct: 639 PRGLVTVKASKDGILKQVVPEFDRLKSQYETLW------QMGGNDG-------------- 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKL-DFIYRQAWL 894 ++ QK+IDQA S N D P + L D + A+ Sbjct: 679 ------------YLKLVGVMQKFIDQAISANTSYDPTRFEGGRVPMNQMLKDLL--SAYK 724 Query: 895 MGLKTTYYLRSR 906 GLKT YY +R Sbjct: 725 YGLKTLYYHNTR 736 >gi|261364562|ref|ZP_05977445.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria mucosa ATCC 25996] gi|288567129|gb|EFC88689.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria mucosa ATCC 25996] Length = 759 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ + ++ P H + +Y IE+ Sbjct: 67 AAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFEHVKKLTDAGKYDRHIIED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + + RD F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 ILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 353 GNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ + R +G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID Sbjct: 524 YYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCSEPLLCD------WESLRSDIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|269139683|ref|YP_003296384.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda EIB202] gi|267985344|gb|ACY85173.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda EIB202] gi|304559552|gb|ADM42216.1| Ribonucleotide reductase of class Ia, alpha subunit [Edwardsiella tarda FL6-60] Length = 760 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 223/795 (28%), Positives = 345/795 (43%), Gaps = 91/795 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K H R +E G Sbjct: 65 AAADLISRETPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDH---------VVRLVEMG 113 Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A LL + D + + L + RD F Y ++ L +Y + ++G E Q Sbjct: 114 KYDAHLLTDFSRD-EFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 173 YMLVAACL-FSHYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ Q Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNRLMYQRLIQ 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + +FE Y YE+ + + RKI AV L+ M+ Sbjct: 350 GGEITLFSPSDVPGLYDAFFADQNQFERLYVQYEQDSRIRQ----RKIKAVELFSLMMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V V SNLC EI L N + E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A ++Q D ++LA+ AVR LD ++D + I A++ R +G+G++ F Sbjct: 466 AFNLGA--IDSQDDLEELAT---LAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + AS LAQE+GA F + + QG+ PI Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPI 580 Query: 724 DSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS L A + L + W+ L+ + G+RNS ++ P+ T + I + Sbjct: 581 DSYKKDLDAICSEPLHYD------WETLRAEIVRDGLRNSTLSSLMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + +K++ G V + ER+ D Sbjct: 635 IEPPRGYISIKASKDGILRQV----------------------------VPEYERLKDAY 666 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWL 894 + + A + L+ QK+IDQ+ S N D PSG K+L A+ Sbjct: 667 ELLWAMPGNDGYLQLV---GLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSRSAT 909 +G+KT YY +R Sbjct: 724 LGVKTLYYQNTRDGA 738 >gi|327399024|ref|YP_004339893.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hippea maritima DSM 10411] gi|327181653|gb|AEA33834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hippea maritima DSM 10411] Length = 725 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 184/623 (29%), Positives = 287/623 (46%), Gaps = 83/623 (13%) Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLA-------LKETEKEKRAVEFYNLLSS 348 L +L RY +G+ IE P+ RVA +A + E EK EF +++S Sbjct: 7 ALIVLKSRYLQKDSDGNIIETPEQLIERVAKAIAKADENYSATKEEIEKTTNEFMDVMSE 66 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F+ +TPTL N+G QLS+CF+ + D + IF A++ A++ K GG G ++ +R Sbjct: 67 LKFLPNTPTLVNAGRPLGQLSACFVLPINDSMDSIFDAVKATALIHKSGGGTGFSFSRLR 126 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 + T G S G + F+KV + A+ QGG R+GA L H D+ +F+ + Sbjct: 127 PKNDIVSSTMGVSSGPVSFMKVFDCATEAIKQGGVRRGANMGILRVDHPDILDFIHCKDK 186 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 G+ + N + I + F+ + + + L +P N E Sbjct: 187 EGE----FSNFNISVAITNKFLDALKNDEEYELINP------------------RNKE-- 222 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTE 587 V K+ A +W ++ ++G P I F D N + P + VG + S+N C E Sbjct: 223 -------VVGKLKASFVWDEIAKSAHKSGEPGIIFIDRINEKHPLSKEVGEIESTNPCGE 275 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 L CNLGSINL D+D L T+ TAV LDNVID+N + ++K + Sbjct: 276 QPLLPFES----CNLGSINLGKFVKGKSIDWDNLKKTVFTAVHFLDNVIDVNIYPLKKIE 331 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 ++ +R +GLG+MGF L L IPY S EA+++A++ M FI + AS ELA++RG Sbjct: 332 ENTKKNRKVGLGVMGFADMLIDLGIPYDSKEAIKLAEDVMCFIQKISKEASSELAKKRGN 391 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + ++K S++ + + I MRN+ IA Sbjct: 392 FPNYKYSIYSK-----------------------------------ENIPMRNATTTTIA 416 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I S I+P + Y K + G V L N LK R ++ E + + Sbjct: 417 PTGSISMIADASSGIEPIFALAYYKQVLDGKRLPYVYERLFNVLKDRGIYTEKLAERIID 476 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 + GS+ IE IP+D++K+ TA +I I+ + QK+ D A S + + S +D Sbjct: 477 NRGSLKGIEEIPEDIRKLFVTAMDITYKAHIDIQAAFQKYTDNAVSKTINMPN-SATVVD 535 Query: 887 F--IYRQAWLMGLKTTYYLRSRS 907 Y A+ GLK R S Sbjct: 536 VKEAYNYAYKNGLKGITVYRDGS 558 >gi|326784149|ref|YP_004324542.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] gi|310004881|gb|ADO99272.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] Length = 774 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 197/684 (28%), Positives = 314/684 (45%), Gaps = 41/684 (5%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG++ N +++ +VEEAC GL VS+ V + YDG+S +++ LI S+ LI Sbjct: 13 DGSIEPLNLEKMHKMVEEACEGLSGVSASQVEMNSGIQFYDGISTDNIQEILIRSASDLI 72 Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 + PNY V +R L+ LR++V + T +++ Y EE L Sbjct: 73 SLDNPNYQYVASRLLMFSLRKQVFNKSVWQDGMPTPYDVALYNVTVNKVYDEE------L 126 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMG 327 + D D L N + + RD+ F Y GL+ + D+Y + S E PQ ++ +AM Sbjct: 127 LDKYSDEDWAKLNNYIDHGRDYLFSYAGLRQVVDKYLVQDRSSNEVFETPQYMYLFIAMT 186 Query: 328 L--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGI 383 L T++ +YN +S TP + +G R P Q +SC L D L I Sbjct: 187 LFADYPATQRLDYVRRYYNAISKHKINIPTPIM--AGVRTPLRQFASCVLIDSDDTLDSI 244 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 F + G+G + +RG+ + I G GV+PFLK T Q G Sbjct: 245 FSSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVAHTGVVPFLKKFESTVRCCTQNGI 304 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R G+ + WH ++E+ + L+ N G + R ++ + I LF +R +N TLFS Sbjct: 305 RGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIKNEDITLFS 364 Query: 504 PDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWI 561 P +V L+D +G + F+ Y +YE + + RK I A L+ +L ETG +I Sbjct: 365 PHDVPGLYDDFGTDAFDARYVDYE-----SDQSIPRKTIGAQELFLSLLKERAETGRLYI 419 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANN 614 D CN S + V+ SNLC EITL + E A+C L ++N + N Sbjct: 420 MNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPLQHIDGDGEIALCILSAVN-VGKLKN- 475 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D + AVR L+ +ID + + A+KS R++G+G +G L Y Sbjct: 476 ---LDDMEELCDLAVRGLEELIDYQNYPVNAAEKSTKNRRSLGVGFIGLAHYLARNGEHY 532 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 P A ++ + E ++ + +S ELA+E+GA + + + G+ PID+ EV D Sbjct: 533 DDPGAWKLVHKLAESFQYYLLKSSNELAKEKGACGYYHRTKYSDGILPIDTYK--REV-D 589 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 E+ S WD L+ +K G+R+S A P+ + + + + I+P L +K + Sbjct: 590 EICQVELSH-DWDSLRADIKEFGLRHSTLSAQMPSESSSVVSNETNGIEPPRAYLSIKKS 648 Query: 795 MSGDF-TVVNSFLVNELKQRDLWD 817 G VV F + LW+ Sbjct: 649 KKGPLKQVVPQFTTLKNNYTLLWE 672 >gi|147668970|ref|YP_001213788.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides sp. BAV1] gi|146269918|gb|ABQ16910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. BAV1] Length = 866 Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 183/646 (28%), Positives = 290/646 (44%), Gaps = 85/646 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFM 352 +L RY G E + F RVA +A+ E + R EF+NL++ F+ Sbjct: 134 VLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFFNLMTRLEFL 193 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 194 PNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQD 253 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F++ + + QGG R+GA A L H D+ +F+ + G Sbjct: 254 RVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFVHAKDKAG-- 311 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + N + I D FM+ V + L +P H+ G Sbjct: 312 --VLTNFNLSVAITDKFMQAVKDGVDYDLLNP------HN-------------------G 344 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E V ++A ++ K++ M ++TG P I F D N +P +G + S+N C E L Sbjct: 345 E--VVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLP 402 Query: 593 SSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL N DY KL+ I++AVR LDNVID+N + + ++ Sbjct: 403 YES----CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIEE 458 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R IGLG+MGF L L +PY S ++++A+E M F++ A S ELA ERG + Sbjct: 459 MTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVF 518 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +++GS++++ P MRN++C IAP Sbjct: 519 PAYRGSIYEKSGRP-----------------------------------MRNASCTTIAP 543 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827 T T++ I G S I+P + + ++ + G + VN + K+ + E +I L Sbjct: 544 TGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA-- 601 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLD 886 +G+ + +P D K + TA +I P W + + QK D A S + +G+ + Sbjct: 602 EGAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVA 661 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 +Y+ A LK R S ST K + +PN Sbjct: 662 EVYKMAHASNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 707 >gi|251790601|ref|YP_003005322.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya zeae Ech1591] gi|247539222|gb|ACT07843.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae Ech1591] Length = 762 Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 216/793 (27%), Positives = 347/793 (43%), Gaps = 93/793 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K +H + +E Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQF--EPPKLYNH---------VVKMVEMA 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I A L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFNNQDEFERLYVKYEQDDSIRK----QQIKAAELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ + ++LA+ AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--ISSLHELEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y++ A + + E I ++ + AS +LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKHGVRYSNGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 S RD ++ P W+ L+K ++T G+RNS A+ P+ T + I + Sbjct: 582 SYK-----RD---LDNICSEPLHHDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I+P ++ VK++ G ++ + +D ++ ++ D+ +DG Sbjct: 634 GIEPPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWDMPSNDG----------- 677 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAW 893 ++ QK+IDQA S N D PSGK +L A+ Sbjct: 678 ---------------YLQLVGLMQKFIDQAISANTNYDPARFPSGKVPMTQLLKDLLTAY 722 Query: 894 LMGLKTTYYLRSR 906 GLKT YY +R Sbjct: 723 KFGLKTLYYQNTR 735 >gi|289432245|ref|YP_003462118.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] gi|288945965|gb|ADC73662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] Length = 866 Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 183/646 (28%), Positives = 289/646 (44%), Gaps = 85/646 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFM 352 +L RY G E + F RVA +A+ E + R EF+NL++ F+ Sbjct: 134 VLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFFNLMTRLEFL 193 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 194 PNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQD 253 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F++ + + QGG R+GA A L H D+ +F+ + G Sbjct: 254 RVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFVHAKDKAG-- 311 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + N + I D FM+ V + L +P H+ G Sbjct: 312 --VLTNFNLSVAITDKFMQAVKDGVDYDLLNP------HN-------------------G 344 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E V ++A ++ K++ M ++TG P I F D N +P +G + S+N C E L Sbjct: 345 E--VVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLP 402 Query: 593 SSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL N DY KL+ I++AVR LDNVID+N + + + Sbjct: 403 YES----CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIDE 458 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R IGLG+MGF L L +PY S ++++A+E M F++ A S ELA ERG + Sbjct: 459 MTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVF 518 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +++GS++++ P MRN++C IAP Sbjct: 519 PAYRGSIYEKSGRP-----------------------------------MRNASCTTIAP 543 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827 T T++ I G S I+P + + ++ + G + VN + K+ + E +I L Sbjct: 544 TGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA-- 601 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLD 886 +G+ + +P D K + TA +I P W + + QK D A S + +G+ + Sbjct: 602 EGAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVA 661 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 +Y+ A LK R S ST K + +PN Sbjct: 662 EVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 707 >gi|260102936|ref|ZP_05753173.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] gi|260083262|gb|EEW67382.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] Length = 722 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 185/654 (28%), Positives = 309/654 (47%), Gaps = 76/654 (11%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 85 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F I+A ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 321 ITKE-YQNLLNNPRIKKTF--INARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377 Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI T ++ +E+ + CNLGS+N+ A + DKL S + Sbjct: 378 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 433 Query: 627 TAVRVLDNVI---DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +V+ L+ V D++C KK N +RAIGLG M L HI Y SPEAVE Sbjct: 434 DSVQALNRVARSSDLDCAP--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFT 491 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVR 733 I++HA S +LA++ GA+ FK S + D+ V P + E+ Sbjct: 492 GIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIV 549 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 550 AKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRK 609 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 V ++ +N+ D+ + A+E+ P Sbjct: 610 EADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVGP 640 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I+ + QK++DQ+ SL L++ D + + L+ Y A+ + YY+R R Sbjct: 641 NAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVR 694 >gi|255065943|ref|ZP_05317798.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sicca ATCC 29256] gi|255049854|gb|EET45318.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sicca ATCC 29256] Length = 759 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 190/674 (28%), Positives = 307/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ + ++ P H + +Y IE+ Sbjct: 67 AAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFDHVKKLTDAGKYDRHIIED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + + RD F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VAM L K ++ + FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 ILVAMCLFSKYPQETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIECD 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 234 DSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGG 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 354 NITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERA 409 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 410 GTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAF 469 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D+L VR LD ++D + +E A+ + R +G+G++ + Sbjct: 470 NLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAY 524 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ Sbjct: 525 YLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDT 584 Query: 726 I--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 L A + L + W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 585 YKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|238021470|ref|ZP_04601896.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147] gi|237868450|gb|EEP69456.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147] Length = 757 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 213/806 (26%), Positives = 339/806 (42%), Gaps = 91/806 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ DG L N ++ +V A GL +VS V +++ Y+G+ D+ +I Sbjct: 5 MQVTKRDGRLEPINLDKIHKVVTWAAEGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +E P+Y + AR + LR+ + Y P H + +Y +++ Sbjct: 65 SAADLISEETPDYQYLAARLAIFHLRK-IAYGEYAPPHLFAHVQKMVALGKYDAHLLQDY 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 +A + + +ERD F Y ++ + +Y + +R E PQ + Sbjct: 124 TEAEYNE----------INGYIDHERDLTFSYAAVKQMEGKYLVQNRVTRQIFESPQFLY 173 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VAM L K + + FY+ +S F TP + SG R P Q SSC L Sbjct: 174 ILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIM--SGVRTPTRQFSSCVLIECD 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 232 DSLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WHI+V+ L L+ N G + R ++ I L R+ + Sbjct: 292 CSQGGVRGGAATLFYPLWHIEVQSLLVLKNNRGVEENRIRQLDYGVQINKLMYTRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTM 552 TLFSP E L++ + EFE Y YE RK ISA L+ ++ Sbjct: 352 NITLFSPHETPGLYEAFFADQDEFERLYTQYENDPS------IRKETISAADLFSMLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN SP V V SNLC EI L N + E A+C L Sbjct: 406 RAGTGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A N +++ LA VR LD ++D + I AKK+ R +G+G++ + Sbjct: 466 AFNLGA--LENLDEFENLAD---LTVRALDALLDYQDYPIPAAKKATMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A+++ + E + ++ + ASV LA+E GA F + + QG+ PI Sbjct: 521 SYYLAKNGVKYSDGSAIDLTHRTFEAMQYYLLKASVNLAKEYGACPLFNETTYSQGILPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 581 DTY----KADLDKFCNEPLHYDWEALRADIVKYGLRNSTLSALMPSETSSQIANATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + +K + G VV F + + LW + +DG Sbjct: 637 PPRGLVTIKQSKDGILKQVVPEFERLKNQYETLW------QMGGNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWL 894 ++ QK+IDQA S N D P + L + A+ Sbjct: 678 -------------YLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLL-SAYK 723 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920 G+KT YY +R +S L+ D Sbjct: 724 YGVKTLYYHNTRDGADDRQSDLQDDD 749 >gi|319638205|ref|ZP_07992968.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102] gi|317400478|gb|EFV81136.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102] Length = 759 Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 191/677 (28%), Positives = 305/677 (45%), Gaps = 49/677 (7%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A +K+ DG L + ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 4 ATNIKVTKRDGRLEDIDLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI ++ P+Y + AR + LR+ +P H + + R+I Sbjct: 64 IIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEF--EPPHLYDHVKKLTDAGKYDRHI 121 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 + S +FD L + + RD F Y ++ L +Y + +R E PQ Sbjct: 122 -------IADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQ 172 Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 ++ VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 173 FLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVL 229 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 230 IECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQA 289 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ Sbjct: 290 AVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRL 349 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP+EV L+D + EFE Y YE+ + + R + A L+ ++ Sbjct: 350 IKGGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLPATELFSTLM 405 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V VH SNLC EI L N + E A+C Sbjct: 406 QERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCT 465 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A NN + ++LA VR LD ++D + + A+ + R +G+G++ Sbjct: 466 LSAFNLGA--LNNLDELEELAD---LTVRALDALLDYQDYPVAAARTATMNRRTLGIGVI 520 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG Sbjct: 521 NYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKL 580 Query: 722 PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PID+ +D + N W+ L+ + G+RNS A+ P+ T + I + Sbjct: 581 PIDTYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATN 635 Query: 781 SIDPSYQNLYVKSNMSG 797 I+P + VK++ G Sbjct: 636 GIEPPRGLVSVKASKDG 652 >gi|323126701|gb|ADX23998.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 728 Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 206/763 (26%), Positives = 356/763 (46%), Gaps = 104/763 (13%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KK + H + + E RY++E + L+ ++ L YL + YE+ Sbjct: 15 TRFKKTDGSYHFDSDAIAVE---RYLDEQISPNLMMFPSLEEKLAYLIKEGYYEQAIFDL 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF+Y Q D FL++ G+ ++ Q++ ++ G ET +++ + Sbjct: 72 YPDDVIKEAFQYAYQQ---DYRFLNLMGA-MKFYQSYALKTLDGKYYLETVEDRVVMNAL 127 Query: 342 ---------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388 +NL+ F +TPT N+G R + SC+L + D++ I A+ Sbjct: 128 FLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIG 187 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 188 TSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAG 247 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 248 AVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKEMALFSP---Y 304 Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D+ +YGK+ +I+ E Y + IK ISA L++ + + FE+G+P++ F D Sbjct: 305 DIKRVYGKDMSDISITEEYNKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDT 363 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANN 614 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 364 VNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGSINI----AEA 419 Query: 615 QFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + I T++R LD V D++C +IEK +NH A+GLG M L Sbjct: 420 MTDAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANH---AVGLGAMNLHGFLATN 476 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 H+ Y S EAV+ D +++HA AS +LA+E+GA++ F+ S + G + + A Sbjct: 477 HLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFKQYVIEDA 536 Query: 731 EVRDE----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + + + L + +LP W L + ++T G+ N++ +A+APT +I+ + + S+ Sbjct: 537 KPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYLSSCTPSL 596 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + V+ + V ++ +N+ + Y++ Sbjct: 597 QPVVAPVEVRKEGNLGRIYVPAYQINQ------------ENYAYYERG------------ 632 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ + + Y Sbjct: 633 -----AYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKLKCASIY 687 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 Y+R R + S D +L++V D N T ++ SC Sbjct: 688 YVRVRQEV-LAGSEQYDEDSQLDSV---DKNGLTDTINECQSC 726 >gi|256849453|ref|ZP_05554885.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus crispatus MV-1A-US] gi|262046122|ref|ZP_06019085.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|256713569|gb|EEU28558.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus crispatus MV-1A-US] gi|260573452|gb|EEX30009.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 722 Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 187/655 (28%), Positives = 307/655 (46%), Gaps = 78/655 (11%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 85 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 321 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377 Query: 579 VHSSNLCTEIT-LNSSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI +N+ S CNLGS+N+ A + DKL + Sbjct: 378 IVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVS 433 Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +V+ L+ V D++C +IEK K+N RAIGLG M L HI Y SPEAVE Sbjct: 434 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732 I++HA S +LA+ GA+ FK S + D+ V P + E+ Sbjct: 491 TGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSP--KTDKIKEI 548 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 549 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 608 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 V ++ +N+ D+ + A+E+ Sbjct: 609 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 639 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 P +I+ + QK++DQ+ SL L++ D + + L+ Y A+ + YY+R R Sbjct: 640 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 694 >gi|257454183|ref|ZP_05619453.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter aerosaccus SK60] gi|257448356|gb|EEV23329.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter aerosaccus SK60] Length = 762 Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 190/672 (28%), Positives = 303/672 (45%), Gaps = 53/672 (7%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG L + ++ ++E A GL +VS V ++ YD ++ + +I S+ LI Sbjct: 13 DGRLEKIDLDKIHRVIEWAAEGLDNVSVSQVEISSHIQFYDKITTKSIHETIIKSAADLI 72 Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG-VKARL 268 P+Y + AR + LR+ + ++ P H + +EG A + Sbjct: 73 SAATPDYQYLAARLAIFHLRK-IAFGQFEPPHLFDH----------VTKLTQEGRYDAHI 121 Query: 269 LHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVA 325 L + S +FD+ L + + + RD +F Y ++ + +Y + + E PQ +M V Sbjct: 122 LQDFSKEEFDI--LNDYIDHNRDLSFAYAAVKQMEGKYLVQDRVTKQVFESPQFLYMLVG 179 Query: 326 MGLALKETEKEKRAVE------FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 M L ++ +A FY+ S+F TP + SG R P Q SSC L Sbjct: 180 MCLFASYDKQYDKAARLDYIKRFYDTTSTFKISLPTPIM--SGVRTPSRQFSSCVLIECD 237 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 238 DSLDSINATTSAIVRYVSQRAGIGVNAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 297 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I +R+ +N Sbjct: 298 CSQGGVRGGAATLFYPIWHLEVENLLVLKNNRGVEDNRVRHMDYGVQINKTIYQRLIKNQ 357 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE YE YE+ E R + A L+ M+ Sbjct: 358 NVTLFSPSDVPGLYDAFFADQAEFERLYEQYEQD----ESIRKRSVPAQELFSLMMQERA 413 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG ++ D CN SP V + SNLC EI L N S E A+C L I Sbjct: 414 STGRIYVQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTQPLDNINDESGEIALCTLSGI 473 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL N D + A I VR LD ++D + + AK + R +G+G++ + Sbjct: 474 NLGE--INQLEDIKEPAELI---VRALDALLDYQDYPVIAAKNGSMKRRTLGIGVINYAY 528 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L Y+ P A+ + + E + ++ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 529 YLAKNGTKYSDPTALGLTHRTFEALQYYLLVASNKLAKEQGACPAFGDTTYSQGILPIDT 588 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 A++ + N +L W+ L+ +KT G+RNS A+ P+ T + I + I+P Sbjct: 589 YK--ADI--DAICNEPLQLDWESLRHDIKTHGLRNSTLTALMPSETSSQIANATNGIEPP 644 Query: 786 YQNLYVKSNMSG 797 + VK++ G Sbjct: 645 RGLVSVKASKDG 656 >gi|227114437|ref|ZP_03828093.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 761 Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 214/793 (26%), Positives = 346/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 5 LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ ++ P TH + +E G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSQEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ A + ++I AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A N+ D ++LA+ AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGA--INSLDDLEELAT---LAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + RD A+ N L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----RDLDAICNEPLHLDWEALRNDIKAYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ VK++ G ++ + +D ++ ++ D+ +DG Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L A+ G Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|73748195|ref|YP_307434.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides sp. CBDB1] gi|73659911|emb|CAI82518.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] Length = 761 Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 180/634 (28%), Positives = 285/634 (44%), Gaps = 84/634 (13%) Query: 311 GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 G E + F RVA +A+ E + R EF+NL++ F+ ++PTL N+G Sbjct: 41 GKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFFNLMTRLEFLPNSPTLMNAGRE 100 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLS+CF+ V D + IF A++ AM+ K GG G ++ +R + T G + G Sbjct: 101 LGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGP 160 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 + F++ + + QGG R+GA A L H D+ +F+ + G + N + Sbjct: 161 VSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFVHAKDKAG----VLTNFNLSVA 216 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 I D FM+ V + L +P H+ GE V ++A Sbjct: 217 ITDKFMQAVKDGVDYDLLNP------HN-------------------GE--VVSSLNASE 249 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 ++ K++ M ++TG P I F D N +P +G + S+N C E L CNLGS Sbjct: 250 VFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYES----CNLGS 305 Query: 605 INL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 INL N DY KL+ I++AVR LDNVID+N + + + R IGLG+ Sbjct: 306 INLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIDEMTKKSRKIGLGV 365 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGF L L +PY S ++++A+E M F++ A S ELA ERG + +++GS++++ Sbjct: 366 MGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSG 425 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 P MRN++C IAPT T++ I G S Sbjct: 426 RP-----------------------------------MRNASCTTIAPTGTLSIIAGCSS 450 Query: 781 SIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + + ++ + G + VN + K+ + E +I L +G+ + +P Sbjct: 451 GIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA--EGAHLDEVDVPQ 508 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLK 898 D K + TA +I P W + + QK D A S + +G+ + +Y+ A LK Sbjct: 509 DAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVAEVYKMAHARNLK 568 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 R S ST K + +PN Sbjct: 569 GITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 602 >gi|157144814|ref|YP_001452133.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter koseri ATCC BAA-895] gi|157082019|gb|ABV11697.1| hypothetical protein CKO_00541 [Citrobacter koseri ATCC BAA-895] Length = 761 Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 216/794 (27%), Positives = 347/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------EFEPPALY-DHVVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP V V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDAQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG Sbjct: 517 VINYAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEALHYNWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P ++ +K++ G V+ + + +D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGHVSIKASKDG---VLRQVVPDYEGLKDRYE--LLWEMPSNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQA S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQAISANTNYDPTRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYHNTR 735 >gi|271499643|ref|YP_003332668.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya dadantii Ech586] gi|270343198|gb|ACZ75963.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya dadantii Ech586] Length = 762 Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 216/791 (27%), Positives = 343/791 (43%), Gaps = 89/791 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K H + +E G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + ++ + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDRHLLEDYTEEEFAHMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSSYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YER + +++ A L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFNNQDEFERLYVKYERDDSIRK----KQLKAAELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ + ++LA AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--ISSLHELEELAI---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS +LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKHGVRYSDGSANNLTHQTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 S RD + + W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 SYK-----RDLDNICSEPLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ VK++ G VV + + LW D+ +DG Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKNAYELLW------DMPSNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895 ++ QK++DQA S N D PSGK +L A+ Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKF 724 Query: 896 GLKTTYYLRSR 906 GLKT YY +R Sbjct: 725 GLKTLYYQNTR 735 >gi|328954504|ref|YP_004371838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobacca acetoxidans DSM 11109] gi|328454828|gb|AEB10657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobacca acetoxidans DSM 11109] Length = 738 Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 181/619 (29%), Positives = 291/619 (47%), Gaps = 78/619 (12%) Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFH 350 + +L RY + G E P F+RVA +A E + E+ FY+L++S Sbjct: 21 VTVLKKRYLKKDDHGDVCEQPVDMFLRVAKTIAEVDRCYDPEADIEETTRCFYHLMASRS 80 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 FM ++PTL N+G QLS+CF+ V DD+ IF A++ A++ K GG G ++ +R Sbjct: 81 FMPNSPTLMNAGRELGQLSACFVLPVDDDISSIFDAIKNTALIHKSGGGTGFSFSRIRPE 140 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G + G I F+ + + + QGG R+GA A L H D+E+F+ + T Sbjct: 141 NDRVLSTKGVASGPISFMNIFDVATETIKQGGTRRGANMAILRVDHPDIEKFITCKNQT- 199 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + + N + + D FM+ V + L +P Sbjct: 200 ---DKLTNFNISVAVTDAFMQAVINGEDFALLNP-------------------------- 230 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 R + V R + A L+ ++ + TG P + F D N +P HVG++ S+N C E L Sbjct: 231 RTQQPV-RSVKAAVLFDLIVQSAWSTGEPGLIFLDQVNRGNPIPHVGLIESTNPCGEQPL 289 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL N ++ L + +V LDNVID N + + +++ Sbjct: 290 LPYES----CNLGSINLAQMVKNGAVNFATLKEVVWASVHFLDNVIDANRFPLPQIEEAT 345 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLG+MGF L L I Y S AV++A+E M FI + +AS ELA++RG + + Sbjct: 346 MKNRKIGLGVMGFADMLLYLGISYNSEAAVKVAEEVMSFIQRESKAASAELAEKRGNFPN 405 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F GS++D G N R MRN+ IAPT Sbjct: 406 FPGSIYDTG-------------------NGKGR--------------MRNATTTTIAPTG 432 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 TI+ I G S I+P + +V+ + G + V+ + + ++R ++ ++ + G Sbjct: 433 TISIIAGCSSGIEPLFGISFVRRVLDGAELLEVHPYFEDVARRRGFYNGELMRQIA-QTG 491 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888 SI +++ IP D++++ TA +I P W + + QK+ D A S + + S + + + Sbjct: 492 SIRDLKEIPKDIRRLFVTAHDITPQWHVRIQAAFQKYTDNAVSKTVNFPASASPEDVRQV 551 Query: 889 YRQAWLMGLKTTYYLRSRS 907 Y A+ +GLK R RS Sbjct: 552 YLLAYELGLKGITIYRDRS 570 >gi|167623962|ref|YP_001674256.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella halifaxensis HAW-EB4] gi|167353984|gb|ABZ76597.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella halifaxensis HAW-EB4] Length = 762 Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 212/777 (27%), Positives = 345/777 (44%), Gaps = 85/777 (10%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++E A GL +VS V ++ +DG++ + +I ++ LI E P+Y + Sbjct: 21 KIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIKAAADLISPEAPDYQFL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 +AR + LR++ +P K H + +E+G + E +L Sbjct: 81 SARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLVEQGKYDAHILEDYSQEELD 129 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK--ETEK 335 L + + RD F Y ++ L +Y + ++ E Q ++ VA L K + + Sbjct: 130 ILDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLYILVAACLFAKYPKETR 189 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAML 393 K +FY+ S F TP + +G R P Q SSC L D L I Sbjct: 190 LKYVKDFYDATSLFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSSIVKY 247 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 248 VSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFYP 307 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH++VE L L+ N G D R ++ I + +R+ Q +LFSP +V ++D Sbjct: 308 MWHLEVESLLVLKNNRGVDDNRVRHLDYGVQINKVMYQRLIQGGMISLFSPSDVPGMYDA 367 Query: 514 Y---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + +EFE Y YE AD K ++I AV L+ M+ TG +I D CN Sbjct: 368 FFEDQQEFERLYLKYE--ADDSIRK--KQIKAVELFSLMMQERASTGRIYIQNVDHCNTH 423 Query: 571 SP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 SP V V SNLC EI L N E A+C L ++NL A D+L Sbjct: 424 SPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNLGA-----IKKLDEL 478 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 AVR LDN++D + I AKK++ R +G+G++ F + L + Y+ A Sbjct: 479 EPLADLAVRALDNLLDYQDYPIISAKKASMNRRTLGIGVINFANYLAKEGVRYSDGSANG 538 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMNR 740 I ++ E I F+ + AS++LAQE+GA +F + + +G+ PID+ L ++ DE Sbjct: 539 ITHKTFEAIQFYLLKASMKLAQEQGACPAFHETTYAKGILPIDTYKRDLDKICDE----- 593 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 L W+ L++ +KT G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 594 PLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG--- 650 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +LKQ ++ D + + S + ++P++ + Sbjct: 651 --------QLKQ-------VVPDFEKYQYSYELLWQMPNNDGYLQLVGL----------- 684 Query: 861 SRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLKTTYYLRSRSATS 910 QK++DQ+ S N D E + + + A+ G+KT YY +R S Sbjct: 685 --MQKFVDQSISANTNYDPTRFEGGRVPMKVLLKDLLTAYKYGVKTLYYHNTRDGAS 739 >gi|242238483|ref|YP_002986664.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya dadantii Ech703] gi|242130540|gb|ACS84842.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya dadantii Ech703] Length = 762 Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 217/792 (27%), Positives = 340/792 (42%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ E LY ++ ++ G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAFG----------QFEPPTLY-DHVVNMVDMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDRHLLEDYSQEEFTLMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE Q D K ++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFTDQDEFERLYVQYE-QDDSIRKK---QLKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D +L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA-----ISDLSELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LAQE+GA F + + QG+ P+D Sbjct: 522 YYLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAQEQGACPWFGETTYAQGILPVD 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + RD + N L W+ L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----RDLDSVCNEALHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ +K++ G ++ + +D ++ ++ D+ +DG Sbjct: 637 PPRGHISIKASKDG---ILRQVVPEYETLKDAYE--LLWDMPSNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK+IDQA S N D PSG K+L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSA 908 LKT YY +R Sbjct: 726 LKTLYYQNTRDG 737 >gi|237808190|ref|YP_002892630.1| ribonucleotide-diphosphate reductase subunit alpha [Tolumonas auensis DSM 9187] gi|237500451|gb|ACQ93044.1| ribonucleoside-diphosphate reductase, alpha subunit [Tolumonas auensis DSM 9187] Length = 758 Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 199/674 (29%), Positives = 297/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + D + + ++ +V A GLQ VS V + YDG+ SD+ LI Sbjct: 5 LMVTKRDNHTEALDLDKIHRVVTWAAEGLQGVSVSQVELSAHIQFYDGIRTSDIHETLIK 64 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E+ P+Y + AR + LR++ + P + Q +E G Sbjct: 65 SAADLISEQAPDYQYMAARLAMFHLRKKAYGG-FTPPSLFEQVKTQ----------VEAG 113 Query: 264 -VKARLLHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 +LL + S +FDL L L +ERD F Y ++ L +Y L + G E PQ Sbjct: 114 RYDQQLLTDYSKEEFDL--LDGYLAHERDMHFAYAAVKQLEGKYLLQNRVTGEIYESPQF 171 Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M VA L T + FY+ +S+F TP + SG R P Q SSC L Sbjct: 172 LYMLVAACLFANYPRTTRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ Q Sbjct: 290 KCCSQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEENRVRHMDYGVQINRLMYQRLIQ 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP + L+D + EFE Y YE+ + R++ AV L+ ++ Sbjct: 350 GGNITLFSPSDAPGLYDAFFADQAEFERLYLQYEKDPAIRK----RQMKAVELFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + + E A+C L Sbjct: 406 RAGTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLDHYLDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+L AVR LD ++D + I AK R +G+G++ + Sbjct: 466 AFNLGAIES-----LDELEPLAELAVRALDALLDYQDYPIPAAKNGAMWRRPLGIGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A+ + + E I ++ + ASV+LA+E GA F + + QG+ PI Sbjct: 521 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVKLAKEFGACPRFNETTYAQGILPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ D+L L WD L+ ++ G+RNS A+ P+ T + I + I+ Sbjct: 581 DT---YKRDLDDLC-QEPLLLDWDSLRHEIRQHGLRNSTLTALMPSETSSQIANATNGIE 636 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 637 PPRGLISVKASKDG 650 >gi|311278799|ref|YP_003941030.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] gi|308747994|gb|ADO47746.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] Length = 761 Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 218/794 (27%), Positives = 338/794 (42%), Gaps = 89/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISREAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDTSIRQ----QRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAISG-----LDELEDLAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGIMPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N WD L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAVVNEPLHYDWDGLREAIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G VV + + LW ++ +DG Sbjct: 637 PPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPSNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895 ++ QK+IDQ+ S N D PSGK +L A+ Sbjct: 678 -------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKF 724 Query: 896 GLKTTYYLRSRSAT 909 G+KT YY +R Sbjct: 725 GVKTLYYHNTRDGA 738 >gi|325130343|gb|EGC53109.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis OX99.30304] gi|325136203|gb|EGC58811.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M0579] gi|325208253|gb|ADZ03705.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis NZ-05/33] Length = 759 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 195/695 (28%), Positives = 310/695 (44%), Gaps = 52/695 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + + E PQ + Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816 +P + VK++ G VV F + LW Sbjct: 638 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 672 >gi|167039475|ref|YP_001662460.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoanaerobacter sp. X514] gi|300915422|ref|ZP_07132735.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X561] gi|307725199|ref|YP_003904950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X513] gi|166853715|gb|ABY92124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X514] gi|300888482|gb|EFK83631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X561] gi|307582260|gb|ADN55659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X513] Length = 770 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 186/625 (29%), Positives = 288/625 (46%), Gaps = 84/625 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351 ++L RY NG IE + F RVA +A K + E FY+++ + F Sbjct: 9 KVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFYDMMVALDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V ++ + L P Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N C E L Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSINL + DYDKL T+ AV LDNVID N + + + + Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF + L L IPY S EAVE+ +E MEFI + AS++LA++RG Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASIKLAEQRGT 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S++ + I +RN+ IA Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT TI+ I G S I+P + ++ M + VN +R + E ++ ++ Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 GS+ +I+ IP+D+K+I A +IDP W ++ + QK +D A S + + +E + + + Sbjct: 479 R-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910 Y A+ +G K R S S Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562 >gi|48478313|ref|YP_024019.1| ribonucleotide-diphosphate reductase subunit alpha [Picrophilus torridus DSM 9790] gi|48430961|gb|AAT43826.1| ribonucleoside-diphosphate reductase alpha chain [Picrophilus torridus DSM 9790] Length = 773 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 168/571 (29%), Positives = 277/571 (48%), Gaps = 73/571 (12%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +F +++S+ F+ ++PTL N+G QLS+CF+ V D + IF AL+ A + K GG Sbjct: 224 KFEDVMSNLKFVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFDALKYTAEIHKSGGGT 283 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R + T G + G + F+++ + T + QGGKR+GA L H D+ Sbjct: 284 GFSFSRLRAKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGGKRRGANMGILRYDHPDIM 343 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 +F+ + + + + + N + + D F +++ + L +P + Sbjct: 344 DFITSKDS---ENKVLSNFNISVAVEDEFFEKLDNDDYIELKNPRDG------------- 387 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 KV +I A +W ++ ++TG P + F D N ++P +++G + Sbjct: 388 --------------KVVNRIKASTIWNTIINQAWKTGDPGMIFLDEINKKNPVKNIGYIE 433 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 S+N C E L CNLGSINL + +FD+D TI A R LDNV+D N Sbjct: 434 STNPCGEQPLMPYES----CNLGSINLSKFVVDGKFDFDAYKETIDIATRFLDNVVDANK 489 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 ++K K+ R IGLGLMGF L +L IPY S EA+EI + M+F++ + S Sbjct: 490 FPVDKIKEMTRKTRKIGLGLMGFADMLIMLGIPYNSNEALEIGERIMKFLNDESHLESQR 549 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERG + + GS W++ + I MRN Sbjct: 550 LAEERGVFPGWYGSDWEK-----------------------------------QNIKMRN 574 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819 S IAPT TI+ I G S SI+P + +V+ ++G + +N NEL++R+L+ + Sbjct: 575 STTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELIEINPLFENELRKRNLYSDD 634 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878 ++ + G++ +I+ +PDD+K++ TA EIDP W + + Q++ D S + L Sbjct: 635 LMEKVA-RTGNLRDID-LPDDIKRVFVTAQEIDPDWHVLMQATFQRYCDSGVSKTINLPY 692 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 E + + YR A + K R RS T Sbjct: 693 EATPDDIARSYRLAKDLHCKGITVYRDRSKT 723 Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 VIKR+G FD KI+ AI KA ++V+ + + LT+ + LL+ ++ Sbjct: 8 VIKRDGSRVPFDKEKITMAIYKAMLSVKFGSMEDASK-------LTDAVIDELLKSDEEP 60 Query: 91 LIVHIEDIQDQVECSLMQSGHHK-----ITREYVLYREERSDVR 129 +E IQD VE LM + + + Y++YRE+R +R Sbjct: 61 T---VERIQDTVEKVLMTKKINNRDFTAVAKSYIIYREKRKTIR 101 >gi|312984311|ref|ZP_07791654.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] gi|312984330|ref|ZP_07791673.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] gi|310894276|gb|EFQ43355.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] gi|310894295|gb|EFQ43374.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] Length = 727 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 187/655 (28%), Positives = 311/655 (47%), Gaps = 78/655 (11%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 90 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 148 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 149 KDIISNRFQPATPTFLNAGKKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 208 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 209 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQILQF 268 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 269 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 325 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 326 ITKE-YQNLLNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 382 Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI T ++ +E+ + CNLGS+N+ A + DKL + Sbjct: 383 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVS 438 Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +V+ L+ V D++C +IEK K+N RAIGLG M L HI Y SPEAVE Sbjct: 439 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 495 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732 I++HA S +LA++ GA+ FK S + D+ V P + E+ Sbjct: 496 TGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEI 553 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 554 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 613 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 V ++ +N+ D+ + A+E+ Sbjct: 614 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 644 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 P +I+ + QK++DQ+ SL L++ D + + L+ Y A+ + YY+R R Sbjct: 645 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 699 >gi|254672041|emb|CBA04616.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha275] Length = 759 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 193/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + +Y +E+ Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + +ERD +F Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + VK++ G Sbjct: 638 EPPRGLVTVKASKDG 652 >gi|261377766|ref|ZP_05982339.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria cinerea ATCC 14685] gi|269146055|gb|EEZ72473.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria cinerea ATCC 14685] Length = 759 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEPIDLDKIHRVVTWAADGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ + ++ P H + +Y IE+ Sbjct: 67 AAADLISQDTPDYQYLAARLAIFHLRK-IAYGDFEPPHLYDHVKKLTDSGKYDRHIIED- 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 S +FD L + + RD AF Y ++ L +Y + +R E PQ + Sbjct: 125 -------YSREEFD--ELNAYIDHGRDMAFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 469 FNLGA--LNN---LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID Sbjct: 524 YYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPID 583 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ + G+RNS A+ P+ T + I + I+ Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + VK++ G Sbjct: 639 PPRGLVTVKASKDG 652 >gi|307266246|ref|ZP_07547787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter wiegelii Rt8.B1] gi|306918696|gb|EFN48929.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter wiegelii Rt8.B1] Length = 770 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 185/625 (29%), Positives = 288/625 (46%), Gaps = 84/625 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351 ++L RY NG IE + F RVA +A K + E FY+++ + F Sbjct: 9 KVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFYDMMVALDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V ++ + L P Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N C E L Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSINL + DYDKL T+ AV LDNVID N + + + + Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF + L L IPY S EAVE+ +E MEFI + AS++LA++RG Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASIKLAEQRGT 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S++ + I +RN+ IA Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT TI+ I G S I+P + ++ M + VN +R + E ++ ++ Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 GS+ +I+ IP+D+K++ A +IDP W ++ + QK +D A S + + +E + + + Sbjct: 479 R-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910 Y A+ +G K R S S Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562 >gi|225847949|ref|YP_002728112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfurihydrogenibium azorense Az-Fu1] gi|225643612|gb|ACN98662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfurihydrogenibium azorense Az-Fu1] Length = 846 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 163/587 (27%), Positives = 283/587 (48%), Gaps = 57/587 (9%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 EK E+YNL+ S FM +TP L N G +CF+ + D L I L+ A++ + Sbjct: 232 EKEVDEYYNLMVSRKFMPNTPALVNFGNPLGMGMACFVLGMEDSLLSIMETLKNAAIIFQ 291 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG G +++ +R G + T+G S G I F+ + + + QGG R+GA L + Sbjct: 292 SGGGCGYNFSTLRPEGDFVRSTHGVSSGPIAFMTLFDKMTDVIKQGGVRRGANMGILNSD 351 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+E+F+ +K + + N + ++ + F + +N + L +P Sbjct: 352 HPDIEKFVVAKKGN----LQLTNFNISVFLKEDFWEYYKENKPYPLINP----------- 396 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQ 574 R + ++ + I+ + ++ +E+ P + F D N +P + Sbjct: 397 ---------------RNK-QIVKYINPKNFFDLIVYQGWESAEPGLLFDDNINRYNPFLK 440 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK---------LASTI 625 +G + S+N C E+ L + C+LGSINL A F ++D +K L T+ Sbjct: 441 ALGKIESTNPCGEVLLYPNES----CDLGSINLWA-FVEEEYDGEKRVVKINWEDLEKTV 495 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R AVR LDN++DIN + ++K ++ R IGLG+MG L L +PY S E ++ + Sbjct: 496 RLAVRFLDNILDINKYPLKKIEERTLKTRKIGLGVMGLADTLFELELPYDSKEGLDFMER 555 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 MEFI++++ S+E+A++RG++ F S + G P + Sbjct: 556 IMEFINYYSKLESIEIAKKRGSFPYFNKSFYKNGNLPFRG----------FYEKESWHFD 605 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+++ + +K G+RN+ IAPT +I+ I G S I+P Y +Y K G F VN Sbjct: 606 WEKVSQDIKNHGLRNAYTTVIAPTGSISMIAGCSAGIEPVYSLVYEKKVTIGSFYYVNPV 665 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 +++ L+D+ +I D+ ++GSI NI IP K + TA +I +++ + QK Sbjct: 666 FEKFMEREGLFDDNLIKDVVRNNGSIKNIPYIPQRYKNVFKTAKDISGKDHVKALASIQK 725 Query: 866 WIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 W+D + S + + ++ S +++ Y A +G K R +S V Sbjct: 726 WVDSSVSKTINFPEDVSIEEMKETYLLAHELGCKGLTVYREKSIAGV 772 Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 7/103 (6%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++IKR+G V FD SKI+ AI KA AV K S S ++L ++ V +L S Sbjct: 4 KIIKRDGRVVDFDISKIANAIWKAMQAVGEKDKSLS-------ESLAKKVVEKLESKLSS 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 I +E +QD VE +L+++G K+ + Y+LYRE+R+ +R + Sbjct: 57 NQIPTVEQVQDIVEETLIEAGLSKVAKAYILYREKRAQIRKEK 99 >gi|307129980|ref|YP_003881996.1| Ribonucleotide reductase of class Ia (aerobic), subunit alpha [Dickeya dadantii 3937] gi|306527509|gb|ADM97439.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Dickeya dadantii 3937] Length = 762 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 217/790 (27%), Positives = 346/790 (43%), Gaps = 87/790 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K H + + +E G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQF--EPPKLHDHVI---------KMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE Q D K ++ A L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFTNQDEFERLYVKYE-QDDSIRKK---QLKAAELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ + ++LA+ AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--ISSLHELEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS +LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 S RD + + W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 SYK-----RDLDSICSEPLHYDWEALRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ VK++ G ++ + +D ++ ++ D+ +DG Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWDMPSNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK++DQA S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPARFPSGKVPMTQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSR 906 LKT YY +R Sbjct: 726 LKTLYYQNTR 735 >gi|269839439|ref|YP_003324131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] gi|269791169|gb|ACZ43309.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] Length = 598 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 164/577 (28%), Positives = 267/577 (46%), Gaps = 79/577 (13%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A FY ++ F+ ++PTL N+GT Q +CF+ V D L GIF L+ A++ + G Sbjct: 59 AERFYQAMAHLEFLPNSPTLMNAGTPSSQCMACFVLPVEDSLEGIFDTLKLAALIQQTGG 118 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G ++ +R G +H T G S G + F+ + N + QG KR+GA L H D Sbjct: 119 GTGFSFSRLRPRGDVVHSTGGISSGAVSFMMLYNAMTETIKQGSKRRGANMGILRVDHPD 178 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EF+ ++ DRR ++ N + + D FM+ + + + L +P + S Sbjct: 179 VREFVTSKR----DRRALNNFNISVGVTDEFMRAIEKGEKYPLVNPRDRS---------- 224 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 V+ A +W ++ +++G P + D N ++P +H+G Sbjct: 225 -----------------VWEHEDARRIWELIIQEAWDSGEPGLVALDTINRQNPTKHLGE 267 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDN 634 + ++N C E L+ C LGSINL A Q D+ KL + V LDN Sbjct: 268 IEATNPCAEEPLHPYE----ACCLGSINLNAVVTGPPEQRQLDWHKLGELVDLGVHFLDN 323 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VIDIN + + + +R IGLG+MG+ L L +PY S EA+ +A+E M F+ A Sbjct: 324 VIDINHYPDPRIEDICRRNRRIGLGVMGWADLLFQLGVPYDSEEALSLAEELMGFVEDRA 383 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + ASV+LA+ RG + ++ GS +D+ P Sbjct: 384 VEASVKLAERRGVFPNYPGSDYDRRGGP-------------------------------- 411 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQ 812 MRN+ IAPT TI I S I+P + Y + + G ++ + E ++ Sbjct: 412 --RMRNATTRTIAPTGTIGIIANCSAGIEPLFALTYTRRALGGRELKQEIHPVFLEEARR 469 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R + D+ + + G + N+ +P+DL+++ ATA EI P W + + Q+ +D S Sbjct: 470 RGVLDDHLREHV-VATGRVRNLPTLPEDLRRVFATALEISPEWHVRMQATFQRHVDNGVS 528 Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906 + L E + + ++ YR A+ +G K T Y SR Sbjct: 529 KTINLPQEATPEDVESAYRLAYELGCKGITVYRYGSR 565 >gi|323467362|gb|ADX71049.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus helveticus H10] Length = 727 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 185/654 (28%), Positives = 308/654 (47%), Gaps = 76/654 (11%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 90 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 148 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 149 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 208 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 209 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 268 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 269 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 325 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 326 ITKE-YQNLLNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 382 Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI T ++ +E+ + CNLGS+N+ A + DKL + Sbjct: 383 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVS 438 Query: 627 TAVRVLDNVI---DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +V+ L+ V D++C KK N +RAIGLG M L HI Y SPEAVE Sbjct: 439 DSVQALNRVARSSDLDCAP--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFT 496 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVR 733 I++HA S +LA++ GA+ FK S + D+ V P + E+ Sbjct: 497 GIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIV 554 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 555 AKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRK 614 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 V ++ +N+ D+ + A+E+ P Sbjct: 615 EADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVGP 645 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I+ + QK++DQ+ SL L++ D + + L+ Y A+ + YY+R R Sbjct: 646 NAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVR 699 >gi|113200700|ref|YP_717863.1| ribonucleotide reductase subunit A [Synechococcus phage syn9] gi|76574599|gb|ABA47164.1| ribonucleotide reductase subunit A [Synechococcus phage syn9] Length = 767 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 191/689 (27%), Positives = 312/689 (45%), Gaps = 42/689 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ GT + + ++ +VE AC GL VS V +DG+ D++ LI Sbjct: 7 INVIKRSGTAETLDLDKIHTMVEHACKGLAGVSESQVEMNANLQFFDGVETKDIQEILIR 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY V AR LL LR+ V H + E+ + IE G Sbjct: 67 SANDLISLEAPNYQFVAARLLLFGLRKAVYNG---------HPDGHPPLKEHVEKCIERG 117 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 V + + D + L + + ++RD+ F Y G++ + D+Y + G E PQ + Sbjct: 118 VYDKTILSKYTDEEWDKLNSFMDHDRDYLFTYAGIRQVVDKYLVQDRSTGEIYETPQFMY 177 Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M +A L + + + ++YN +S TP + T Q +SC L V D Sbjct: 178 MMIAATLFQDDDPFYRIEYVKKYYNAISKHRLNIPTPVMAGVRTTLRQFASCVLVDVDDT 237 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L IF + G+G + +RG+ + I GV+PFLK T Sbjct: 238 LDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRDGEVVHTGVVPFLKKFESTVRCCT 297 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R G+ + WH ++E+ + L+ N G + R ++ + + +F +R N Sbjct: 298 QNGIRGGSATVHFPIWHTEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFIANKDI 357 Query: 500 TLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 +LFSP +V L+D +G EF+ Y YE+ + + ++I+A L +L ETG Sbjct: 358 SLFSPHDVPGLYDAFGTPEFDDLYTQYEQDSSIPK----KRINAQELILDLLKERAETGR 413 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLLAHF 611 +I D CN S + V+ SNLC EITL + E A+C L +IN+ Sbjct: 414 LYIMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPLQHIDGQGEIALCILSAINV---- 467 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D++ AVR LD++ID + I+ A+ S R++G+G +G L Sbjct: 468 -GKLKSLDEIDELCELAVRGLDSLIDYQGYPIKAAEISTLNRRSLGIGFIGLAHYLAKHG 526 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y SP+A ++ + E + + AS +A E+G F + + G+ PID+ E Sbjct: 527 AKYNSPKAYKLVHDLTERFQYALLIASNRMAMEKGPCGYFDKTKYSDGILPIDTYK--KE 584 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + D++ N S W+ L++R+K G+R+S A P+ + + + + I+P L + Sbjct: 585 I-DDIVSNDLS-CDWEFLRERIKQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSI 642 Query: 792 KSNMSGDF-TVVNSFLVNELKQRD--LWD 817 K + G +V F N LK LWD Sbjct: 643 KKSKKGPLKQIVPQF--NSLKANYDLLWD 669 >gi|50913720|ref|YP_059692.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10394] gi|50902794|gb|AAT86509.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10394] Length = 726 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 213/778 (27%), Positives = 355/778 (45%), Gaps = 127/778 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ F+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAI-FD 70 Query: 295 YLGLQILYDRY---------FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE---- 341 ++ D + FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 71 AYPNDLIKDAFHYAYQQGYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNALF 128 Query: 342 --------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 129 LADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H +V FLD ++ D++ R + IPD+ + +N LFSP D Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YD 305 Query: 510 LHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 + YGK+ +I+ E Y++ IK ISA L++ + + FE+G+P++ F D Sbjct: 306 IKCAYGKDMSDISITEEYDKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTV 364 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQ 615 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 365 NKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA--- 421 Query: 616 FDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D I T++R LD V D+NC ++E +NH A+GLG+M L H Sbjct: 422 -DAPHFEQLITTSIRALDRVSRVSDLNCAPSVEAGNAANH---AVGLGVMNLHGFLATNH 477 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 I Y + EAV+ D +++HA AS +LA+E+GA++ F S + G + A+ Sbjct: 478 IYYDTKEAVDFTDLFFHAMAYHAFKASCQLAKEKGAFAGFSLSTYADGTY-------FAK 530 Query: 732 VRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 E A +T++ LP W L +K G+ N++ +A+APT +I+ + Sbjct: 531 YLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLS 590 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 + S+ P + V+ S V ++ +++ ++ Y+ ER Sbjct: 591 SCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYY-------ER 631 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 632 ----------GAYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQ 681 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S + TEC+ C Sbjct: 682 NCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724 >gi|300717618|ref|YP_003742421.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia billingiae Eb661] gi|299063454|emb|CAX60574.1| Ribonucleoside-diphosphate reductase alpha chain [Erwinia billingiae Eb661] Length = 761 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 212/792 (26%), Positives = 348/792 (43%), Gaps = 85/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GLQ+VS V ++ Y+G+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETVIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI ++ P+Y + AR + LR++ ++ P+ LY + R ++ G Sbjct: 65 SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPK---------LYDQ-VKRMVDMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDRHLLEDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACLFSGYPRDTRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE + + +++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYENEPSIRK----QRVKAVDLFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLLDVNDENGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A N+ D ++LA+ AVR LD ++D + I A++ R +G+G++ + Sbjct: 468 NLGA--INSLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A ++ + E I F+ + AS ELA+E+GA F + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQFYLLKASNELAKEQGACPWFNETTYAQGIMPIDT 582 Query: 726 IGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +D A++ L WD L++++KT G+RNS A+ P+ T + I + I+P Sbjct: 583 YK-----KDLDAISSEPLHLDWDGLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 638 PRGHISIKASKDG---ILRQVVPEYERLKDSYE--LLWDMPNNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWLMGL 897 ++ QK+IDQA S N D +Q A+ G+ Sbjct: 678 -----------YLQLVGLMQKFIDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSAT 909 KT YY +R Sbjct: 727 KTLYYQNTRDGA 738 >gi|319942043|ref|ZP_08016362.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804427|gb|EFW01305.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis 3_1_45B] Length = 591 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 204/665 (30%), Positives = 303/665 (45%), Gaps = 98/665 (14%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +A + +ERD F+ LGL L + Y S PQ F VA + A Sbjct: 1 MAVQMNFERDKLFDELGLMRLRESYMRSSEKS----PQERFAFVAETFG----SNPEHAQ 52 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 Y+ S STP L ++ SCFLT + D G+ L E L+ GG+ Sbjct: 53 RIYDYASRHWLSFSTPILSFGRSKKGLPISCFLTYMEDSAEGLVDTLSEVNWLSMLGGGV 112 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G + I + KS GV+P LKV + +A QG R+G+ A+L+ H D+ Sbjct: 113 G--------IHVRIRSADEKSVGVMPHLKVYDAACLAYRQGSTRRGSYAAFLDIDHPDII 164 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+++RK TGD + +++ + D FM+++ E S Y +E+ Sbjct: 165 PFIEMRKPTGDQNMKALNLHHGVNLSDAFMEKI------------EASMRDSSYDDTWEL 212 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578 + + +V K+SA LW+++L M TG P++ F D N P + G+ Sbjct: 213 RHPSTH--------EVVAKVSARDLWQRILEMRMHTGEPYLVFIDTANRALPSWLKDKGL 264 Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNV 635 +H SNLCTEI L +S + TAVC L S+NL + NNQ I A+ +LDNV Sbjct: 265 SIHGSNLCTEIFLPTSHDRTAVCCLSSLNLEYFDEWKNNQ-------QFITDAMELLDNV 317 Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ID I +A+ S R++GLG +GF + L +P+ S A I + I Sbjct: 318 LQYFIDHAPDQIARARYSAMRERSVGLGALGFHAYLQKKGVPFESAAAKSINKQVFRMIR 377 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A +L ERGA D GV Sbjct: 378 TACAEADKKLCAERGACPDAA----DSGV------------------------------- 402 Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R S+ M++AP A+ + I G S SI+P N+Y + +SG + + N FL +L Sbjct: 403 -----SRRFSHWMSVAPNASSSLIMGGTSPSIEPYRANIYRQDTISGAYIMKNRFLKAKL 457 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + L E + +DL HDGSI + + IP D+K + TA EID W++E A+ RQ++IDQ Sbjct: 458 AELGLDTEEVWADLIAHDGSIQHRDDIPQDVKDVFKTAPEIDQRWIVELAADRQEFIDQG 517 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS---RSATSVE-KSTLKGVDGKLNA 925 QS+NL+ + S L + AW GLK+ YY RS R A V K+ K ++ +++ Sbjct: 518 QSVNLFFPPDVSIAYLHACHFLAWKKGLKSLYYNRSDKLRKADRVGVKAERKRIEDEIDM 577 Query: 926 VPVTD 930 V D Sbjct: 578 RAVAD 582 >gi|149197801|ref|ZP_01874850.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera araneosa HTCC2155] gi|149139022|gb|EDM27426.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera araneosa HTCC2155] Length = 755 Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 211/802 (26%), Positives = 348/802 (43%), Gaps = 81/802 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ DGT + +++ +++ A L VS V ++ +DG++ D+ +I Sbjct: 5 IQVTKRDGTREPIDLEKIHRVIDWAAKDLNHVSVSQVELRSHVQFHDGVTTEDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +E P+Y + AR + LR++ P L+ E+ + +E+G Sbjct: 65 SAADLISEESPDYQYLAARLAIFHLRKKAYGQFDPPP----------LF-EHVTKLVEDG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + N L + RD F Y ++ L +Y + + G+ E PQ + Sbjct: 114 KYDKHLIEDYTEDEFNEMENALDHWRDLNFSYAAVKQLEGKYLVQNRVTGAIYESPQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 M V L + KE R + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 MLVGACL-FSKYPKETRMDYIIRFYDAASNFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I + G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINASSSAIVKYVSQRAGIGLNAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH +VE L L+ N G + R ++ L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPLWHREVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYERLVKK 350 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + ++ E E Y + + I+ + A+ L+ + T Sbjct: 351 GNITLFSPGDVPGLYDAFFEDQEKFEELYIKYENDPSIQK-ETMKAIELFSLFASERAST 409 Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607 G ++ D CN SP Q V + SNLC EI L N + E A+C L +INL Sbjct: 410 GRIYLQNVDHCNTHSPFQADVAPIRQSNLCLEIALPTKPLEHINDENGEIALCTLSAINL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A + D++ AVR LD+++D + + A+ S+ R +G+G++ F L Sbjct: 470 GALES-----LDEMEELTELAVRALDSLLDYQDYPVPAARNSSLNRRTLGIGVINFAYYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y++ A + ++ E + +H I AS +LAQE G F + + QG+ P D+ Sbjct: 525 AKNGVFYSNGSANNLVHKTFESLQYHLIKASCKLAQELGPCPKFNETTYSQGIMPTDTYK 584 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + V D N L WD+LK+ VK GMRNS A+ P+ T + I + I+P Sbjct: 585 --SSVDD--FCNEDLHLDWDQLKEDVKKHGMRNSTLSALMPSETSSQISNATNGIEPPRG 640 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VK + G V V E+++ + E + ++P++ + Sbjct: 641 LIAVKQSKDGILKQV----VPEIEKYKSYYELLW--------------QMPNNTGYLQLV 682 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--------AWLMGLKT 899 A QK+IDQ S N D PS + + + + A+ G+KT Sbjct: 683 AI-------------MQKFIDQTISANTNYD-PSKFEGNMVPMKTLLTDLLTAYKYGVKT 728 Query: 900 TYYLRSRSATSVEKSTLKGVDG 921 YY +R + G G Sbjct: 729 LYYHNTRDGAGDSQEEDDGCAG 750 >gi|94987983|ref|YP_596084.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS9429] gi|94991865|ref|YP_599964.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS2096] gi|94541491|gb|ABF31540.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS9429] gi|94545373|gb|ABF35420.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS2096] Length = 726 Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 213/780 (27%), Positives = 351/780 (45%), Gaps = 131/780 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ +YGK+ +I+ E Y++ IK ISA L++ + + FE+G+P++ F D Sbjct: 304 YDIKRVYGKDMSDISITEEYDKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 HI Y + EAV+ D +++HA AS +LA+E+GA++ F S + G + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYHAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528 Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 A+ E A +T++ LP W L +K G+ N++ +A+APT +I+ Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ S V ++ +++ ++ Y++ Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S + TEC C Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECHSC 724 >gi|238852994|ref|ZP_04643392.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus gasseri 202-4] gi|238834389|gb|EEQ26628.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus gasseri 202-4] Length = 722 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 186/655 (28%), Positives = 308/655 (47%), Gaps = 78/655 (11%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ ++ + F R M E+ A+ Sbjct: 85 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QVLERFEDRAVMNALFLADGNEELALNLV 143 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 144 KDIISNRFQPATPTFLNAGRKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 321 ITKE-YQNILNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377 Query: 579 VHSSNLCTEIT-LNSSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI +N+ S CNLGS+N+ A + DKL + Sbjct: 378 IVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVS 433 Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +++ L+ V D++C +IEK K+N RAIGLG M L HI Y SPEAVE Sbjct: 434 DSIQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732 I++HA S +LA+ GA+ FK S + D+ V P + E+ Sbjct: 491 TGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSP--KTDKIKEI 548 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 549 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 608 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 V ++ +N+ D+ + A+E+ Sbjct: 609 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 639 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 P +I+ + QK++DQ+ SL L++ D + + L+ Y A+ + YY+R R Sbjct: 640 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 694 >gi|326782537|ref|YP_004323091.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] gi|310002751|gb|ADO97150.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] Length = 769 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 198/692 (28%), Positives = 317/692 (45%), Gaps = 46/692 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ +G N ++ +VE AC GL VS V +DG+ SD++ LI Sbjct: 7 EIHVIKRNGEKTPLNLDKVHAMVEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + PNY V AR LL LR+ V H +C + Sbjct: 67 RSANDLISLDAPNYQFVAARLLLFGLRKAVYNGHPDGHPPLLEHVKKC---------VGI 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 GV + + D + L + + +ERDF F Y G++ + D+Y + +G E PQ Sbjct: 118 GVYDSAILQKYTDEEWEKLNDFMDHERDFLFTYAGIRQVTDKYLVQDRSSGEIYETPQFM 177 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M VA L ++ +K R ++Y+ +S TP + +G R P Q +SC L Sbjct: 178 YMMVAATL-FQDDDKFYRLEYVKKYYDAISKHRLNIPTPIM--AGVRTPLRQFASCVLVD 234 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L IF + G+G + +RG+ A I G + GVIPFLK T Sbjct: 235 VDDTLDSIFSSDMAIGQYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATV 294 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R Q Sbjct: 295 RCCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIQ 354 Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 N +LFSP +V L+D +G + F+ Y +YE + + RK + A L +L Sbjct: 355 NGTISLFSPHDVPGLYDAFGTDSFDARYVDYE-----SDQSIPRKTVDAQKLILDLLKER 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606 ETG +I D CN S + V+ SNLC EITL + E A+C L +IN Sbjct: 410 AETGRVYIMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPLQHIDGQGEIALCILSAIN 467 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + N D+L AVR LD +ID + ++ A++S R++G+G +G Sbjct: 468 -VGKLKN----LDELDELCDLAVRGLDALIDYQEYPVKAAEQSTTNRRSLGIGYIGLAHY 522 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L Y S +A ++ + E + ++AS +A E+G F + + G+ PID+ Sbjct: 523 LAKNGAKYDSAKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTY 582 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 ++V DE+ N + W+ L+ R+ G+R+S A P+ + + + + I+P Sbjct: 583 K--SDV-DEIVPNEL-QCDWEFLRSRILQYGLRHSTLSAQMPSESSSVVSNATNGIEPPR 638 Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817 L +K + G +V S+ + LWD Sbjct: 639 AYLSIKKSKKGPLKQIVPSYTTLKNAYTLLWD 670 >gi|157833699|pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1 Length = 761 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 214/789 (27%), Positives = 347/789 (43%), Gaps = 85/789 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN + D+LA AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INNLDELDELAI---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSR 906 KT YY +R Sbjct: 727 KTLYYQNTR 735 >gi|300926339|ref|ZP_07142139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|301328724|ref|ZP_07221777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] gi|300417616|gb|EFK00927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|300844872|gb|EFK72632.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] Length = 761 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 347/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + +G+KT YY +R Sbjct: 722 YKLGVKTLYYQNTR 735 >gi|206576450|ref|YP_002237362.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] gi|288934290|ref|YP_003438349.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella variicola At-22] gi|290508493|ref|ZP_06547864.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp. 1_1_55] gi|206565508|gb|ACI07284.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] gi|288889019|gb|ADC57337.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella variicola At-22] gi|289777887|gb|EFD85884.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp. 1_1_55] Length = 761 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 218/797 (27%), Positives = 341/797 (42%), Gaps = 97/797 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E+G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + L + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581 Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + G+++E + W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 582 TYKKDLDGIVSE---------SLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P ++ +K++ G VV + + LW ++ +DG Sbjct: 633 NGIEPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG--------- 677 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891 ++ QK+IDQ+ S N D PSGK +L Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLN 720 Query: 892 AWLMGLKTTYYLRSRSA 908 A+ G+KT YY +R Sbjct: 721 AYKFGVKTLYYHNTRDG 737 >gi|325201995|gb|ADY97449.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M01-240149] Length = 753 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 194/695 (27%), Positives = 310/695 (44%), Gaps = 52/695 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + + E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFLY 169 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VAM L + KE R FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RGL + I G + G IPF K+ Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 402 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V VH SNLC EI L N + E A+C L + Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L VR LD ++D + +E A+ S R++G+G++ + Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 578 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 631 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816 +P + VK++ G VV F + LW Sbjct: 632 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 666 >gi|57234895|ref|YP_181092.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides ethenogenes 195] gi|57225343|gb|AAW40400.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] Length = 761 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 180/635 (28%), Positives = 292/635 (45%), Gaps = 86/635 (13%) Query: 311 GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 G E + F RVA +A+ E + R EFYN+++ F+ ++PTL N+G Sbjct: 41 GKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNIMTRLEFLPNSPTLMNAGRE 100 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLS+CF+ V D + IF A++ AM+ K GG G ++ +R + T G + G Sbjct: 101 LGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGP 160 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 + F++ + + QGG R+GA A L H D+ +F+ + G + N + Sbjct: 161 VSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFIHAKDKAG----VLTNFNLSVA 216 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 I D FM+ V + L +P H+ GE V +++A Sbjct: 217 ITDKFMQAVKDGVDYDLLNP------HN-------------------GE--VVSRLNATE 249 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 ++ K++ M ++TG P I F D N +P +G + S+N C E L CNLGS Sbjct: 250 VFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYES----CNLGS 305 Query: 605 INL--LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 INL + + Q DY KL+ +++AVR LDNVID+N + + ++ R IGLG+ Sbjct: 306 INLSRMVTVSGGQAVVDYKKLSRVVKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGV 365 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGF L L IPY S ++++A+E M F++ A S ELA ERG + +++GS++++ Sbjct: 366 MGFADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSSELAVERGVFPAYRGSIYEKSG 425 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 P MRN++C IAPT T++ I G S Sbjct: 426 RP-----------------------------------MRNASCTTIAPTGTLSIIAGCSS 450 Query: 781 SIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + + ++ + G + VN + K+ + E +I L +G+ + +P Sbjct: 451 GIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA--EGAHLDEADVPA 508 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGL 897 + K++ TA +I P W + + QK D A +++N + G + +Y+ A L Sbjct: 509 EAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSREAVEGDVAE-VYKMAHDSNL 567 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 K R S ST K + V +PN Sbjct: 568 KGITIYRDGSREDQPMSTGKAENKIETPAAVVNPN 602 >gi|323171913|gb|EFZ57557.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli LT-68] Length = 761 Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 346/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|191166528|ref|ZP_03028358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] gi|193062323|ref|ZP_03043418.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|193068151|ref|ZP_03049115.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|194427206|ref|ZP_03059757.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] gi|209919686|ref|YP_002293770.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SE11] gi|218554797|ref|YP_002387710.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI1] gi|256017604|ref|ZP_05431469.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] gi|260844830|ref|YP_003222608.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|260856284|ref|YP_003230175.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|260868964|ref|YP_003235366.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O111:H- str. 11128] gi|307311199|ref|ZP_07590843.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|309793114|ref|ZP_07687542.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|332278614|ref|ZP_08391027.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] gi|190903488|gb|EDV63207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] gi|192931989|gb|EDV84588.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|192958430|gb|EDV88869.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|194414827|gb|EDX31098.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] gi|209912945|dbj|BAG78019.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia coli SE11] gi|218361565|emb|CAQ99156.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli IAI1] gi|257754933|dbj|BAI26435.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257759977|dbj|BAI31474.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|257765320|dbj|BAI36815.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O111:H- str. 11128] gi|306908705|gb|EFN39202.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|308123400|gb|EFO60662.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|315061534|gb|ADT75861.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli W] gi|320199829|gb|EFW74418.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli EC4100B] gi|323156511|gb|EFZ42665.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli EPECa14] gi|323161695|gb|EFZ47578.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E128010] gi|323176839|gb|EFZ62429.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1180] gi|323377885|gb|ADX50153.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli KO11] gi|324020906|gb|EGB90125.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 117-3] gi|324117883|gb|EGC11782.1| ribonucleotide reductase [Escherichia coli E1167] gi|332100966|gb|EGJ04312.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] Length = 761 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 346/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|194736487|ref|YP_002115348.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711989|gb|ACF91210.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 780 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 213/815 (26%), Positives = 353/815 (43%), Gaps = 87/815 (10%) Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ++R D+ +++ + + + L + DG N ++ +++ A GL +VS V Sbjct: 2 DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ YDG+ SD+ +I ++ LI ++ P+Y + AR + LR++ +P Sbjct: 62 LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 HH + +E G L E + + + + + ++RD F Y ++ L Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170 Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356 +Y + + G E Q ++ VA L +E R FY+ +S+F TP Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229 Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 + SG R P Q SSC L D L I G+G + +R LG+ I Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G G IPF K + +QGG R GA + WH++VE L L+ N G + Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531 R M+ I L R+ + TLFSP +V L+D + EFE Y YE Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590 + +++ AV L+ M+ TG +I D CN SP V V SNLC EI L Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463 Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 N + E A+C L + NL A D+L AVR LD ++D + Sbjct: 464 PTKPLHDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I AK+ R +G+G++ F L Y+ A + ++ E I ++ + AS ELA Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761 +E+GA F + + +G+ PID+ +D + +N W++L++ +KT G+RNS Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNS 633 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 A+ P+ T + I + I+P + +K++ G ++ + + +D ++ ++ Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879 ++ +DG ++ QK+IDQ+ S N D Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722 Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSAT 909 PSGK +L A+ G+KT YY +R Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGA 757 >gi|2914234|pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli gi|2914236|pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli gi|2914238|pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli Length = 761 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SASQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|238920520|ref|YP_002934035.1| ribonucleotide-diphosphate reductase subunit alpha [Edwardsiella ictaluri 93-146] gi|238870089|gb|ACR69800.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Edwardsiella ictaluri 93-146] Length = 760 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 220/791 (27%), Positives = 342/791 (43%), Gaps = 89/791 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K H R IE G Sbjct: 65 AAADLISRETPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDH---------VVRLIEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L + + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDTHLLTDFSRDEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSHYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ Q+ Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQS 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +FE Y YE+ + RKI AV L+ M+ Sbjct: 351 GEITLFSPSDVPGLYDAFFADQSQFERLYVQYEQDNSIRQ----RKIKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP HV V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDAHVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ D ++LA+ AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LAQE+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPID 581 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 582 SYKKDLDAICSEPLHYD------WETLRTEIVRDGLRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + +K++ G V + ER+ D + Sbjct: 636 EPPRGYISIKASKDGILRQV----------------------------VPEYERLKDAYE 667 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895 + A + L+ QK+IDQ+ S N D PSG K+L A+ + Sbjct: 668 LLWAMPGNDGYLQLV---GLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKL 724 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 725 GVKTLYYQNTR 735 >gi|187731504|ref|YP_001881064.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii CDC 3083-94] gi|187428496|gb|ACD07770.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii CDC 3083-94] Length = 761 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|224583239|ref|YP_002637037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467766|gb|ACN45596.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|326624096|gb|EGE30441.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 780 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 213/814 (26%), Positives = 353/814 (43%), Gaps = 87/814 (10%) Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ++R D+ +++ + + + L + DG N ++ +++ A GL +VS V Sbjct: 2 DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ YDG+ SD+ +I ++ LI ++ P+Y + AR + LR++ +P Sbjct: 62 LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 HH + +E G L E + + + + + ++RD F Y ++ L Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170 Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356 +Y + + G E Q ++ VA L +E R FY+ +S+F TP Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229 Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 + SG R P Q SSC L D L I G+G + +R LG+ I Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G G IPF K + +QGG R GA + WH++VE L L+ N G + Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531 R M+ I L R+ + TLFSP +V L+D + EFE Y YE Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590 + +++ AV L+ M+ TG +I D CN SP V V SNLC EI L Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463 Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 N + E A+C L + NL A D+L AVR LD ++D + Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I AK+ R +G+G++ F L Y+ A + ++ E I ++ + AS ELA Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761 +E+GA F + + +G+ PID+ +D + +N W++L++ +KT G+RNS Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNS 633 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 A+ P+ T + I + I+P + +K++ G ++ + + +D ++ ++ Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879 ++ +DG ++ QK+IDQ+ S N D Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722 Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908 PSGK +L A+ G+KT YY +R Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756 >gi|16130169|ref|NP_416737.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|74312754|ref|YP_311173.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei Ss046] gi|89109051|ref|AP_002831.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|157161717|ref|YP_001459035.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli HS] gi|170019453|ref|YP_001724407.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ATCC 8739] gi|170081852|ref|YP_001731172.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|194433299|ref|ZP_03065579.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] gi|194436240|ref|ZP_03068342.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] gi|238901408|ref|YP_002927204.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli BW2952] gi|253772843|ref|YP_003035674.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162245|ref|YP_003045353.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B str. REL606] gi|256022084|ref|ZP_05435949.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 4_1_40B] gi|297516088|ref|ZP_06934474.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli OP50] gi|300931420|ref|ZP_07146749.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] gi|300948932|ref|ZP_07162993.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|300958920|ref|ZP_07171023.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] gi|301024216|ref|ZP_07187915.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|301647676|ref|ZP_07247470.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|307138892|ref|ZP_07498248.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli H736] gi|312973511|ref|ZP_07787683.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1827-70] gi|331642863|ref|ZP_08343998.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|2507304|sp|P00452|RIR1_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha; AltName: Full=Protein B1; AltName: Full=Ribonucleoside-diphosphate reductase 1 R1 subunit; AltName: Full=Ribonucleotide reductase 1 gi|2914218|pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli gi|2914220|pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli gi|2914222|pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli gi|2914311|pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying The Specificity Site From Escherichia Coli gi|2914313|pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying The Specificity Site From Escherichia Coli gi|2914315|pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying The Specificity Site From Escherichia Coli gi|284793830|pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A Resolution gi|284793831|pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A Resolution gi|284793832|pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A Resolution gi|1799581|dbj|BAA16053.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|2367133|gb|AAC75294.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|46275274|emb|CAA30056.2| ribonucleotide reductase [Escherichia coli K-12] gi|73856231|gb|AAZ88938.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella sonnei Ss046] gi|157067397|gb|ABV06652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli HS] gi|169754381|gb|ACA77080.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli ATCC 8739] gi|169889687|gb|ACB03394.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|194418393|gb|EDX34482.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] gi|194424968|gb|EDX40953.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] gi|238863474|gb|ACR65472.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli BW2952] gi|242377868|emb|CAQ32636.1| nrdA, subunit of B1 protein and GDP reductase [multifunctional] [Escherichia coli BL21(DE3)] gi|253323887|gb|ACT28489.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974146|gb|ACT39817.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli B str. REL606] gi|253978313|gb|ACT43983.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli BL21(DE3)] gi|260448674|gb|ACX39096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli DH1] gi|299880522|gb|EFI88733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|300314423|gb|EFJ64207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] gi|300451586|gb|EFK15206.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|300460790|gb|EFK24283.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] gi|301074206|gb|EFK89012.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|309702544|emb|CBJ01871.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli ETEC H10407] gi|310332106|gb|EFP99341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1827-70] gi|315136866|dbj|BAJ44025.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli DH1] gi|315615495|gb|EFU96127.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 3431] gi|320178794|gb|EFW53757.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii ATCC 9905] gi|323168603|gb|EFZ54283.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella sonnei 53G] gi|323936631|gb|EGB32917.1| ribonucleotide reductase [Escherichia coli E1520] gi|323941072|gb|EGB37259.1| ribonucleotide reductase [Escherichia coli E482] gi|323961540|gb|EGB57148.1| ribonucleotide reductase [Escherichia coli H489] gi|323973063|gb|EGB68257.1| ribonucleotide reductase [Escherichia coli TA007] gi|331039661|gb|EGI11881.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|332093863|gb|EGI98917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii 5216-82] gi|332096124|gb|EGJ01127.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 155-74] gi|332344014|gb|AEE57348.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli UMNK88] Length = 761 Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|317131233|ref|YP_004090547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ethanoligenens harbinense YUAN-3] gi|315469212|gb|ADU25816.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ethanoligenens harbinense YUAN-3] Length = 762 Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 182/625 (29%), Positives = 288/625 (46%), Gaps = 88/625 (14%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFM 352 +L RY + +G E + F RVA +A + + + A FY ++ F+ Sbjct: 10 VLEKRYLIRDADGRPTETIEELFHRVADAIAAPDRTYNPDADIKALADRFYARMTKLEFL 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G QL++CF+ V D + IF A+++ A++ K GG G ++ +R G+ Sbjct: 70 PNSPTLMNAGRPLGQLAACFVLPVEDSMEAIFEAIKQAALIHKSGGGTGFSFSRLRPKGS 129 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 ++ T G + G + F++V N AV QGG R+GA L H D+ EF+D +KN D Sbjct: 130 TVNTTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRVDHPDILEFIDCKKNNAD- 188 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + N + I + FM+ V + + L P+ L +E Sbjct: 189 ---ITNFNISVGITEAFMRAVEADEEYDLIDPNTKESTGRLSARE--------------- 230 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 VF KI A WR G P I F D N + VG + S+N C E L Sbjct: 231 ---VFEKIVDAA-WRN--------GEPGIIFLDRLNRDNMVPSVGAIESTNPCGEQPLLP 278 Query: 593 SSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGS+NL + ++DKLA +R AV LDNVID N + + + Sbjct: 279 YE----ACNLGSVNLHRMLRRQEDGASVINWDKLADVVRDAVHFLDNVIDANRYPLAQID 334 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 R IGLG+MG+ L L IPY S EAV + ++ M FI+ A SAS LAQ RGA Sbjct: 335 HMTKQTRKIGLGVMGWADLLLELGIPYNSDEAVALGEKVMGFITDTARSASAGLAQVRGA 394 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + F+ S G P+ RN+ IA Sbjct: 395 FPLFEESTLKNGT-PV-----------------------------------RNATMTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT T++ I G S ++P + +++++ M G + N L L++R L+ E ++ + Sbjct: 419 PTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTELVEANPVLRQLLEERGLYSEDLMRQIA- 477 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 +GS+ +I+ +P+D++++ A +I P + I+ + Q+ D A S + + + + + Sbjct: 478 QEGSLAHIDALPEDIRRVFVCAHDISPEYHIKMQAAFQRRTDNAVSKTVNFAHDATIADV 537 Query: 886 DFIYRQAWLMGLK--TTYYLRSRSA 908 +Y A+ +G K T Y SR A Sbjct: 538 RRVYMLAYELGCKGVTIYRDGSRDA 562 >gi|330445622|ref|ZP_08309274.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489813|dbj|GAA03771.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 755 Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 214/804 (26%), Positives = 358/804 (44%), Gaps = 85/804 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++E A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ P+ LY E+ + + Sbjct: 64 KAAADLISEETPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LY-EHVKNLVAK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L E + + + + + RD F Y ++ L +Y + ++G E Q Sbjct: 113 GKYDEHLLEDYTEEEFAVMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ +A L + KE R FY+ S F TP + SG R P Q SSC L Sbjct: 173 YILIAAAL-FNKYPKETRLDYIKRFYDAASLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +LFSP +V ++D + +EFE Y YE+ + IK I A+ L+ ++ Sbjct: 350 GENISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDS---SIKR-ETIKAIDLFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A ++ D ++LA VR LD ++D + + A++S R +G+G++ F Sbjct: 466 AFNLGA--IDSLDDLEELA---ELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + E+ E I ++ + ASV LA+E+GA +F + + QGV PI Sbjct: 521 AYYLAKHGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYAQGVLPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D++ + R W+ L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 581 DT---YKQDIDKIC-SAELRYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK++ G ++ + K ++ ++ ++ ++ +DG Sbjct: 637 PPRGFVSVKASKDG---ILKQVVPEYAKYKENYE--LLWNIGSNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLMG 896 ++ QK+IDQA S N D +P GK + + + A+ +G Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSKQPGGKVPMKLLLKDLLNAYKLG 725 Query: 897 LKTTYYLRSRSATSVEKSTLKGVD 920 +KT YY +R S + + D Sbjct: 726 VKTLYYHNTRDGASDNQGDMAADD 749 >gi|209558900|ref|YP_002285372.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes NZ131] gi|209540101|gb|ACI60677.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Streptococcus pyogenes NZ131] Length = 726 Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 213/780 (27%), Positives = 351/780 (45%), Gaps = 131/780 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT NSG R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK+ +I+ E Y++ IK ISA L++ + + FE+G+P++ F D Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 HI Y + EAV+ D ++++A AS +LA+E+GA++ F S + G + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528 Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 A+ E A +T++ LP W L +K G+ N++ +A+APT +I+ Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ S V ++ +++ ++ Y++ Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYTYYERG---- 632 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S + TEC+ C Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECQSC 724 >gi|114766103|ref|ZP_01445112.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca bermudensis HTCC2601] gi|114541658|gb|EAU44699.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp. HTCC2601] Length = 707 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 197/662 (29%), Positives = 314/662 (47%), Gaps = 72/662 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D +++ F F +LG Y Y L +G R +E + + VA+ LA + + A+ Sbjct: 85 DAAFKKKFRFPTFLGAFKYYTSYTLKTRDGKRFLERYEDRVVMVALALARGD---QDLAM 141 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 F + S F +TPT N+G + +L SCFL + D++ I + L+K GG Sbjct: 142 SFMEEILSGRFQPATPTFLNAGKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 201 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I G +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 202 VALMLTNIREHGAPIKGIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 261 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + E Sbjct: 262 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNEPMYLFSPHDVEKIYGVPFSEIS 321 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y+ + I+ KI+A + ++ + + FE+G+P+I F+D N +P G + Sbjct: 322 VT-EKYDEMVEDKRIRK-TKINARSFFQTLAEIQFESGYPYIMFEDTVNRMNPID--GRI 377 Query: 580 HSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI +N +SE CNLGS+N+ D L +T+ Sbjct: 378 TMSNLCSEILQVNEASEYNEDLSYARMGTDISCNLGSLNIA-----KSMDGRDLGATVEA 432 Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V +++ ++ +K N AIGLG M L HI Y SPE VE Sbjct: 433 AIRALTAVSEMSAIDSVPSIRKGNDESHAIGLGQMNLHGFLAREHIHYGSPEGVEFTSVY 492 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLAEVRDELA 737 +++HAI AS LA+ERG ++ F S + GVF + +AE+ D +A Sbjct: 493 FATVAYHAIRASCALAKERGESFKGFAASDYASGVFFDKYTERDWLPESDRVAELFDGIA 552 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + SR W LK V G+ N N A+ PT +I+ I + SI P Sbjct: 553 L--PSRADWAALKADVMEHGLYNRNLQAVPPTGSISYINNSTSSIHP------------- 597 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +V++++ R E I + Y + N D+L + + A+EI P LI Sbjct: 598 --------IVSKIEIR---KEGKIGRVYYPAAFMNN-----DNL-EYYRDAYEIGPEALI 640 Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 E+ + + +DQ SL L+ E + + ++ AW G+KT YY+R R T++E + + Sbjct: 641 ETYAAATEHVDQGLSLTLFFPAEATTRDINRAQILAWKKGIKTIYYVRLRQ-TALEGTEV 699 Query: 917 KG 918 +G Sbjct: 700 EG 701 >gi|188492275|ref|ZP_02999545.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] gi|188487474|gb|EDU62577.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] Length = 761 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDDSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|269102946|ref|ZP_06155643.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162844|gb|EEZ41340.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 755 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 211/794 (26%), Positives = 353/794 (44%), Gaps = 85/794 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ +++ A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTETLDLDKIHRVLDWAAEGLENVSVSQVELKSHIQFYDGMRTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ E LY ++ +E+ Sbjct: 64 KAAADLISEETPDYQYMAARLAIFHLRKKAYG----------QFEPPTLY-KHVSHLVEQ 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y + ++G E Q Sbjct: 113 GKYDKHLLEDYTEEEFAVIDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ +A L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YVLIAACLFAK-YPKETRLDYIKRFYDAASTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 290 KCCSQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +LFSP +V L+D + EFE Y YE+ IK + + A+ L+ ++ Sbjct: 350 GENISLFSPSDVPGLYDAFFADQVEFERLYTQYEQDE---SIKK-QSVKAIDLFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603 TG ++ D CN SP V + SNLC EI L N E E A+C L Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A ++ D ++LA VR LD ++D + + A++S R +G+G++ F Sbjct: 466 AFNLGA--IDSLDDLEELA---ELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + E+ E I ++ + AS+ LA+E+GA +F + + QG+ PI Sbjct: 521 AYYLAKNGVRYSDGSANNLTHEAFEAIQYYLLKASLGLAKEQGACPAFNETTYAQGILPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D++ R W+ L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 581 DT---YKKDIDKICSAEL-RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK++ G ++ + K +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSVKASKDG---ILKQVVPEYTKYKDNYE--LLWNIGGNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AWLMG 896 ++ QK+IDQA S N D +P GK + + + A+ +G Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSRQPGGKVPMKLLLKDLLTAYKLG 725 Query: 897 LKTTYYLRSRSATS 910 +KT YY +R S Sbjct: 726 VKTLYYHNTRDGAS 739 >gi|328943410|ref|ZP_08240875.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium vaginae DSM 15829] gi|327491379|gb|EGF23153.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium vaginae DSM 15829] Length = 756 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 203/705 (28%), Positives = 317/705 (44%), Gaps = 91/705 (12%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L YE+ F F +G Y Y L + R + F RV M A Sbjct: 105 LAYEQHFEFLSLMGAMKFYMAYALQ-SDDRTTYLERFEDRVVMCALFLANGDVALARNLV 163 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 L S F +TPT N+G R + SC+L V D++ I + + L+K GG+ Sbjct: 164 LDLMSNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESIARGIGTSLQLSKRGGGVAL 223 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I G ++ GV+P +K+ DT NQ G+R+GA YL H D+ F Sbjct: 224 CLTNLRETGAPIKGFAHQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRF 283 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ +PD+ K +N LFSP ++ + + I Sbjct: 284 LDTKRENADEKVRIKSLSLGVIVPDITFKLAKENKDMALFSPYDIEKEYKCSMADMSIT- 342 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y+ + IK ISA ++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 343 EKYDELVNNPRIKK-DYISARKFFQTIAELQFESGYPYILFEDTVNRRNPHKKAGRIVMS 401 Query: 583 NLCTEI----TLNSSSE-----ETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI T +S +E +T V CNLGSIN+ A + + + TI+ A+ Sbjct: 402 NLCSEIAQVSTPSSYTEDLGFTQTGVDICCNLGSINIAAAMDHAS----EFSRTIKDAIV 457 Query: 631 VLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 LD V D++C ++ K K NH A+GLG M L HI YAS EAV+ D Sbjct: 458 ALDRVSRSSDLSCAPSVNKGNKLNH---AVGLGAMNLHGFLATHHIYYASAEAVDFVDMF 514 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVF----------PIDS--IGLLAEVRD 734 +++HA AS ELAQ GA++ F S + G + P LLA+ Sbjct: 515 FYAMAYHAFKASSELAQTEGAFAGFADSEYADGTYFKKYTEHKIAPATPRIAKLLADCHF 574 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 EL + W EL K ++ G+ NS+ MA+APT +I+ + + S+ P Sbjct: 575 ELPTQQD----WQELVKDIRAHGLANSHLMAVAPTGSISYLSSCTPSLQP---------- 620 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT-AF 849 +V+ ++ R +G +G + +I DD K + A+ Sbjct: 621 -----------VVSPVETRK-------------EGKVGRVYVPAYKISDDTYKYYQDGAY 656 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 E+ +I + QK +DQA SL L++ + + + L+ Y A+ + YY+R R Sbjct: 657 EVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDLNRAYIYAFKKKCDSIYYVRIRQD 716 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L+ + +A + S+ H C +EC+VC Sbjct: 717 VLEGSEHLESDEILPDAAKSDEKKSAFH-------CDGSSECQVC 754 >gi|323952029|gb|EGB47903.1| ribonucleotide reductase [Escherichia coli H252] Length = 761 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 214/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + E+ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|197334709|ref|YP_002156002.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio fischeri MJ11] gi|197316199|gb|ACH65646.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio fischeri MJ11] Length = 758 Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 219/797 (27%), Positives = 346/797 (43%), Gaps = 91/797 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G+ N ++ ++ A GL +VS V +++ YDG+ SD+ +I Sbjct: 4 QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ +P +H + + + ++I E Sbjct: 64 KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQF--EPPTLFNHVLNLIELGKYDKHIVE 121 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 + +FDL + + + RD F Y ++ L +YF+ + G+ E Q Sbjct: 122 DY-------TQEEFDL--MDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKESRLDYIKRFYDATSQFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G IPF K Sbjct: 230 CDDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 +LFSP +V L+D + EFE YE YE+ + + R+ + A+ L+ ++ Sbjct: 350 GGNISLFSPSDVPGLYDAFFADQAEFERLYEKYEQ-----DTSIKRETVKAIELFSLLMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG +I D CN SP V V SNLC EI L N E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL A +L AVR LD ++D + + A KS R +G+G++ Sbjct: 465 SAFNLGAIEKLE-----ELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + ++ E I ++ + ASV LA+E+GA +F + + QG+ P Sbjct: 520 YAYYLAKNGVKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILP 579 Query: 723 IDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 IDS +D A+ N L W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 580 IDSYK-----KDIDAICNEELHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I+P + VK++ G VV F + LW ++ +DG Sbjct: 635 IEPPRGFVSVKASKDGILKQVVPDFANLKNNYELLW------NIGSNDG----------- 677 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AW 893 ++ QK++DQA S N D +P+GK + + + A+ Sbjct: 678 ---------------YLQLVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATS 910 +GLKT YY +R S Sbjct: 723 KLGLKTLYYHNTRDGAS 739 >gi|161613002|ref|YP_001586967.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362366|gb|ABX66134.1| hypothetical protein SPAB_00708 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 780 Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 213/814 (26%), Positives = 352/814 (43%), Gaps = 87/814 (10%) Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ++R D+ +++ + + + L + DG N ++ +++ A GL +VS V Sbjct: 2 DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ YDG+ SD+ +I ++ LI ++ P+Y + AR + LR++ +P Sbjct: 62 LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 HH + +E G L E + + + + + ++RD F Y ++ L Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170 Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356 +Y + + G E Q ++ VA L +E R FY+ +S+F TP Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLSYVKRFYDAVSTFKISLPTP 229 Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 + SG R P Q SSC L D L I G+G + +R LG+ I Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G G IPF K + +QGG R GA + WH++VE L L+ N G + Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531 R M+ I L R+ + TLFSP +V L+D + EFE Y YE Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590 + +++ AV L+ M+ TG +I D CN SP V V SNLC EI L Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463 Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 N + E A+C L + NL A D+L AVR LD ++D + Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I AK+ R +G+G++ F L Y+ A + ++ E I ++ + AS ELA Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761 +E+GA F + + +G+ PID+ +D + +N W +L++ +KT G+RNS Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNS 633 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 A+ P+ T + I + I+P + +K++ G ++ + + +D ++ ++ Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879 ++ +DG ++ QK+IDQ+ S N D Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722 Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908 PSGK +L A+ G+KT YY +R Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756 >gi|296103862|ref|YP_003614008.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058321|gb|ADF63059.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 761 Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 215/791 (27%), Positives = 346/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISREAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L ++ R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRDTRLEYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + E+ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKHGKRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N L W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-NAPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ +K++ G ++ + + + +D ++ ++ ++ +DG Sbjct: 638 PRGHVSIKASKDG---ILRQVVPDYEQLKDNYE--LLWEMPNNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYHNTRDG 737 >gi|289579197|ref|YP_003477824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter italicus Ab9] gi|289528910|gb|ADD03262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter italicus Ab9] Length = 770 Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 185/625 (29%), Positives = 287/625 (45%), Gaps = 84/625 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351 ++L RY NG IE + F RVA +A K + E FY+++ F Sbjct: 9 KVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFYDMMVDLDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K Sbjct: 129 ATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V ++ + L P Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDRKYDLIDPHTG------------------------ 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N C E L Sbjct: 221 ---KVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277 Query: 592 SSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSINL + DYDKL T+ AV LDNVID N + + + + Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYEIDYDKLKETVYDAVHFLDNVIDANKYPLPQIE 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF + L L IPY S EAVE+ +E MEFI + AS++LA++RG Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEELMEFIDKTSKEASIKLAEKRGT 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S++ + I +RN+ IA Sbjct: 394 FGFYDKSIYKK-----------------------------------TGIKIRNATTTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826 PT TI+ I G S I+P + ++ M V VN +R + + ++ ++ Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKKVAIERGFYSDELMREIA- 477 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 GS+ +I+ IP+D+K++ A +IDP W ++ + QK +D A S + + +E + + + Sbjct: 478 QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910 Y A+ +G K R S S Sbjct: 538 RRTYLLAYKLGCKGVTIYRDGSRES 562 >gi|71892251|ref|YP_277985.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796357|gb|AAZ41108.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 760 Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 211/791 (26%), Positives = 349/791 (44%), Gaps = 95/791 (12%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNY 216 N ++ ++ A GL+ VS V ++ Y+G+ SD++ +I ++ LI E+EP+Y Sbjct: 18 NLDKIHRVINWAAKGLEQVSVSQVELRSHIQFYNGIKTSDIQETIIKAAADLISEEEPDY 77 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + AR + LR++ +P K +H ++ + + +++ + A ++ M F Sbjct: 78 QYLAARLAVFHLRKKAYGQF--EPPKLYNHVLRLIKIGKYDQHLLDDYNAEEFNQ-MDTF 134 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETE 334 + + RD F Y ++ L +Y + + G E Q ++ A L K + Sbjct: 135 --------IDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILTAACLFSKYPK 186 Query: 335 KEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQEN 390 K + +FY+ +S+F +TP + SG R P Q SSC L D L I Sbjct: 187 KTRMHYIQQFYDAISTFKISLATPIM--SGVRTPTRQFSSCVLIECDDSLDSINATSSSI 244 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 G+G + +R LG+ I G IPF K + +QGG R GA Sbjct: 245 VKYVAQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATL 304 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 + WH+++E L L+ N G D R ++ I L +R+ + TLFSP +V L Sbjct: 305 FYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLIEGKYITLFSPSDVPGL 364 Query: 511 HDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ + EFE Y YE + RKI A+ L+ M+ TG +I D C Sbjct: 365 YEAFFNNQNEFEHLYNIYENDHNIRH----RKIKAIELFSLMMQERASTGRIYIQHTDHC 420 Query: 568 NIRSPQQHVGV-VHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDY 618 N S + V SNLC EITL N + E A+C L + NL N + Sbjct: 421 NTHSAFDSIAAPVRQSNLCLEITLPTKPLNNINDHNGEIALCTLSAFNL-----GNIENL 475 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 D L+ VR LD ++D + I A++S R++G+G++ + L + Y+ Sbjct: 476 DDLSELSILIVRALDALLDYQHYPIPAAQRSAVRRRSLGIGVINYAYYLAKHGVRYSDGS 535 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS--IGLLAEVRDEL 736 A ++ + E I +H + AS LAQE+G+ F + + +G+ PID+ L + + + L Sbjct: 536 ANKLTHRTFEAIQYHLLRASNNLAQEKGSCEWFNDTSYSKGILPIDTYKTDLNSFINEPL 595 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 N W++L+ ++K G+RNS A+ P+ T + I + I+P + +K++ + Sbjct: 596 HYN------WEDLRVKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISIKTSKN 649 Query: 797 GDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G VV F+ + LW +IPD+ + Sbjct: 650 GILRQVVPEFIKLKSDYELLW-------------------QIPDNRGYLQLVGI------ 684 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG--------KKL--DFIYRQAWLMGLKTTYYLRS 905 QK+IDQ+ S N D PS K+L D +Y A+ +G+KT YY + Sbjct: 685 -------MQKFIDQSISTNTNYD-PSRFPENKVPMKQLLSDLLY--AYRLGIKTLYYHNT 734 Query: 906 RSATSVEKSTL 916 R + TL Sbjct: 735 RDGAQDVQKTL 745 >gi|308233464|ref|ZP_07664201.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium vaginae DSM 15829] Length = 735 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 203/705 (28%), Positives = 317/705 (44%), Gaps = 91/705 (12%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L YE+ F F +G Y Y L + R + F RV M A Sbjct: 84 LAYEQHFEFLSLMGAMKFYMAYALQ-SDDRTTYLERFEDRVVMCALFLANGDVALARNLV 142 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 L S F +TPT N+G R + SC+L V D++ I + + L+K GG+ Sbjct: 143 LDLMSNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESIARGIGTSLQLSKRGGGVAL 202 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I G ++ GV+P +K+ DT NQ G+R+GA YL H D+ F Sbjct: 203 CLTNLRETGAPIKGFAHQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRF 262 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ +PD+ K +N LFSP ++ + + I Sbjct: 263 LDTKRENADEKVRIKSLSLGVIVPDITFKLAKENKDMALFSPYDIEKEYKCSMADMSIT- 321 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y+ + IK ISA ++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 322 EKYDELVNNPRIKK-DYISARKFFQTIAELQFESGYPYILFEDTVNRRNPHKKAGRIVMS 380 Query: 583 NLCTEI----TLNSSSE-----ETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI T +S +E +T V CNLGSIN+ A + + + TI+ A+ Sbjct: 381 NLCSEIAQVSTPSSYTEDLGFTQTGVDICCNLGSINIAAAMDHAS----EFSRTIKDAIV 436 Query: 631 VLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 LD V D++C ++ K K NH A+GLG M L HI YAS EAV+ D Sbjct: 437 ALDRVSRSSDLSCAPSVNKGNKLNH---AVGLGAMNLHGFLATHHIYYASAEAVDFVDMF 493 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVF----------PIDS--IGLLAEVRD 734 +++HA AS ELAQ GA++ F S + G + P LLA+ Sbjct: 494 FYAMAYHAFKASSELAQTEGAFAGFADSEYADGTYFKKYTEHKIAPATPRIAKLLADCHF 553 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 EL + W EL K ++ G+ NS+ MA+APT +I+ + + S+ P Sbjct: 554 ELPTQQD----WQELVKDIRAHGLANSHLMAVAPTGSISYLSSCTPSLQP---------- 599 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT-AF 849 +V+ ++ R +G +G + +I DD K + A+ Sbjct: 600 -----------VVSPVETR-------------KEGKVGRVYVPAYKISDDTYKYYQDGAY 635 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 E+ +I + QK +DQA SL L++ + + + L+ Y A+ + YY+R R Sbjct: 636 EVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDLNRAYIYAFKKKCDSIYYVRIRQD 695 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L+ + +A + S+ H C +EC+VC Sbjct: 696 VLEGSEHLESDEILPDAAKSDEKKSAFH-------CDGSSECQVC 733 >gi|261346129|ref|ZP_05973773.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] gi|282565782|gb|EFB71317.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] Length = 763 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 218/805 (27%), Positives = 349/805 (43%), Gaps = 91/805 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL +VS +V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGHKERIDLDKIHKVIAWAAEGLNNVSVSLVELRSQIQFYDGIRTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ ++ P+ TH + R +E G Sbjct: 65 AAADLITGDTPDYQYLAARLAIFNLRKKAYGQ-FEPPKLYTHVK----------RLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + D + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSHYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 291 SCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKN 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551 TLFSP +V L+D + EFE Y YE+ + RK + AV L+ M+ Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDEN------IRKSSVKAVELFSLMMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG +I D CN SP V V SNLC EI L N E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL A + D+L AVR LD ++D + I A+K + R +G+G++ Sbjct: 465 SAFNLGAINS-----LDELEELAVLAVRALDALLDYQDYPIPAAQKGSMGRRTLGVGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV P Sbjct: 520 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLP 579 Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ID+ L ++ DE W+ L+K ++ G+RNS A+ P+ T + I + Sbjct: 580 IDTYKRELDKLTDE-----PLHYDWETLRKEIQQYGLRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + +K++ G L+Q ++ D + G+ + ++P + Sbjct: 635 IEPPRGYVSIKASKDGI-----------LRQ-------VVPDYENLKGAYELLWQMPSNN 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWL 894 + QK+IDQ+ S N D PSGK ++ + + A+ Sbjct: 677 GYLQLVGI-------------MQKFIDQSISANTNYDPTRFPSGKVPMNQLLKDLLLAYK 723 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGV 919 G+KT YY +R + L+ V Sbjct: 724 FGVKTLYYHNTRDGAEDVQGDLEEV 748 >gi|91200074|emb|CAJ73117.1| similar to ribonucleoside-diphosphate reductase 1 alpha chain [Candidatus Kuenenia stuttgartiensis] Length = 589 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 185/639 (28%), Positives = 303/639 (47%), Gaps = 87/639 (13%) Query: 301 LYDRYF-LHINGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFHFMC 353 L RY ++ G IE P+ F RVA +A + K+A EFY+L++S F+ Sbjct: 16 LEKRYLKRNVLGKIIESPEDMFRRVAKNIASVDLIYNKKADIVSMEEEFYHLMTSLQFLP 75 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 ++P L N+G QL +CF+ V D + GIF +++ A++ K GG G ++ +R Sbjct: 76 NSPALMNAGRHLQQLLACFVLPVEDSIEGIFDTVKQAALIHKSGGGTGFSFSRIRPKNDI 135 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + + G + G + F+KV N+ A+NQGG R+GA A L H D+ +F+ + G Sbjct: 136 VSASCGMASGPVSFMKVFNEATEAINQGGFRRGANMAALNVNHPDIFDFIHAKNTEG--- 192 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + N + I + FM+ V +A + L +P R + Sbjct: 193 -VLTNFNISVGITNAFMEAVENDAPFPLINP--------------------------RTK 225 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 + V + I A L+++++ ++ G P + F D N +P +G + +N C E L Sbjct: 226 L-VVKTIRAKVLFQEIVQSAWKNGEPGVLFIDAINAANPTPLLGSIEGTNPCGEQPL--- 281 Query: 594 SEETAVCNLGSINL--LAHFANNQFDYD--KLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 C LGS+N+ + + N+ ++ + L TI AV LDNVID H + + + Sbjct: 282 -LPYEACVLGSVNVSQMTTYKNDHYEMNWHTLEKTIHLAVHFLDNVIDATKHPLPQIEVL 340 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 +R IGLG+MGF L L+I Y S EA+ D+ + F S A AS LA ERG + Sbjct: 341 TKGNRKIGLGIMGFADLLIKLNISYNSEEAMRFTDKLLRFFSGKANEASERLASERGMFP 400 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++ S++ Q P RN+ IAPT Sbjct: 401 NYEKSIYAQQNGP----------------------------------KYRNATRTTIAPT 426 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S I+P + Y ++ + G ++ F N K+R L+ + +++++K + Sbjct: 427 GTISIIANCSSGIEPLFAIAYTRNVLVEGGLPEIHPFFENVAKKRGLYTDKLLAEVK-RE 485 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 GSI NI IP D+K+I TA +I P + ++ S QK+ID A S + + E + + ++ Sbjct: 486 GSIQNIAYIPYDIKRIFTTARDISPEYHVKIQSICQKYIDNAVSKTINFPKESTAEDVEK 545 Query: 888 IYRQAWLMGLK--TTYYLRSR--SATSVEKSTLKGVDGK 922 ++ A+ G K T Y +SR A S E + K + GK Sbjct: 546 VFLLAYRSGCKGITIYRDKSRMSQALSFECACTKDLIGK 584 >gi|291618169|ref|YP_003520911.1| NrdA [Pantoea ananatis LMG 20103] gi|291153199|gb|ADD77783.1| NrdA [Pantoea ananatis LMG 20103] gi|327394562|dbj|BAK11984.1| ribonucleoside-diphosphate reductase 1 alpha subunit NrdA [Pantoea ananatis AJ13355] Length = 761 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 211/792 (26%), Positives = 350/792 (44%), Gaps = 85/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY + + ++ G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALYDQ-VVKMVDLG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + L + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDRHLLEDYSREEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + + +R+ + Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKMMYQRLLKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDSSIRK----QRVKAVDLFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDASIAPVRQSNLCLEIALPTKPLSDVNDENGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A ++ D ++LA+ AVR LD ++D + I A++ R +G+G++ F Sbjct: 468 NLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINFAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV PID+ Sbjct: 523 YLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDT 582 Query: 726 IGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +D A+ N L W+ L++++KT G+RNS A+ P+ T + I + I+P Sbjct: 583 YK-----KDLDAICNEPLHLDWETLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 638 PRGHISIKASKDG---ILRQVVPEYERLKDQYE--LLWDMPSNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMGL 897 ++ QK+IDQA S N D P+G K+L A+ G+ Sbjct: 678 -----------YLQLVGVMQKFIDQAISSNTNYDPSRFPNGKVPMKQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSAT 909 KT YY +R Sbjct: 727 KTLYYQNTRDGA 738 >gi|289432508|ref|YP_003462381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] gi|288946228|gb|ADC73925.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] Length = 599 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 188/648 (29%), Positives = 307/648 (47%), Gaps = 97/648 (14%) Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351 ++L RY + R IE P+ F RVA +A E T+ + EFY +S F Sbjct: 22 RVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQAMSRLEF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ +R G Sbjct: 82 LPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + G + + + A V QGG R+G A L+ H D+ F+ + GD Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISCK---GD 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 T + N + + FM +V + + +P Sbjct: 199 PNALT-NFNISVVVTRDFMTKVRSGEDYDIINPHT------------------------- 232 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V R+++A ++ ++ ++TG P + F D N +P + + + C E TL Sbjct: 233 GE--VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGCGEQTLL 290 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSI+L + DY+KL T++ A+R LDNVID+N + + Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K+ +R IGLG+MGF L L+ IPY S EA+ AD+ M+FI + AS +LA+ RG+ Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKLAEIRGS 406 Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + +++GS++D G P MRN+ C +I Sbjct: 407 FPAYEGSMYDVPGGRP-----------------------------------MRNATCTSI 431 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821 APT T++ I GVS I+PS+ ++V++ + G+ + + E+ +R+ + E ++ Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSRELFEKLV 491 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880 S HD +E IPD LK++ TA I P W I + QK+ D A S + + E Sbjct: 492 SSNHLHD-----MECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHEA 546 Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924 + + + ++ A+ GLK T Y SR+A + +S +K VD L+ Sbjct: 547 TREDMANVFNMAYDQGLKGVTVYRDGSRAAQPLCTSESGVKLVDQYLD 594 >gi|205359118|ref|ZP_02667324.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205338509|gb|EDZ25273.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 780 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 213/814 (26%), Positives = 352/814 (43%), Gaps = 87/814 (10%) Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ++R D+ +++ + + + L + DG N ++ +++ A GL +VS V Sbjct: 2 DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ YDG+ SD+ +I ++ LI ++ P+Y + AR + LR++ +P Sbjct: 62 LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 HH + +E G L E + + + + + ++RD F Y ++ L Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170 Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356 +Y + + G E Q ++ VA L +E R FY+ +S+F TP Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229 Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 + SG R P Q SSC L D L I G+G + +R LG+ I Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G G IPF K + +QGG R GA + WH++VE L L+ N G + Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531 R M+ I L R+ + TLFSP +V L+D + EFE Y YE Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSI 407 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590 + +++ AV L+ M+ TG +I D CN SP V V SNLC EI L Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463 Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 N + E A+C L + NL A D+L AVR LD ++D + Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I AK+ R +G+G++ F L Y+ A + ++ E I ++ + AS ELA Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761 +E+GA F + + +G+ PID+ +D + +N W +L++ +KT G+RNS Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNS 633 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 A+ P+ T + I + I+P + +K++ G ++ + + +D ++ ++ Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879 ++ +DG ++ QK+IDQ+ S N D Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722 Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908 PSGK +L A+ G+KT YY +R Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756 >gi|256830880|ref|YP_003159608.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfomicrobium baculatum DSM 4028] gi|256580056|gb|ACU91192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfomicrobium baculatum DSM 4028] Length = 744 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 175/610 (28%), Positives = 296/610 (48%), Gaps = 89/610 (14%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351 +L RY ++G+ IE + F RVA +A E + + A FY+L++ + F Sbjct: 22 VLKKRYQRKGLDGTPIETAKEMFWRVAASIASMEKNYPSSPFKPKDLARTFYSLMTEYDF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QL++CF+ V D + IF A++ A++ K GG G +T +R Sbjct: 82 LPNSPTLMNAGTELGQLAACFVLPVGDSMDEIFDAVKNAALIHKSGGGTGFSFTRLRPKD 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + T G + G I FLK+ N V QGG R+GA L H D+ EF+ ++ GD Sbjct: 142 SRVGSTGGVASGPISFLKIFNTATEQVKQGGTRRGANMGILRVDHPDILEFIRAKEREGD 201 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 ++ N + + + FM+ V + + L +P Sbjct: 202 ----LNNFNLSVALTEKFMQAVENDEEYPLVAPQSQ------------------------ 233 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V K+ A ++ ++ +E+G P I F D N +P G + S+N C E L Sbjct: 234 ---EVIEKLKAREVFELLVRKAWESGDPGIIFIDRINRDNPNPDQGEIESTNPCGEQPLL 290 Query: 592 SSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 CNLGSINL A F + D+D+L + +VR LDNVID + + +++ Sbjct: 291 PYE----ACNLGSINL-ARFVREKDEGVEIDWDRLREVVHLSVRFLDNVIDASEYPLDRI 345 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ +R IGLG+MG+ L+ L +PY S A+ +A++ M FI A SAS ELA+ERG Sbjct: 346 TETVRKNRKIGLGVMGWADLLYQLGLPYDSRRAIVLAEQMMNFIQKEARSASKELAKERG 405 Query: 707 AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 + S++ S++ +Q + P R++ Sbjct: 406 PFPSYETSIYKEQNLGP-----------------------------------YRHATTTT 430 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL 824 IAPT T++ I G S ++P + +V+ M G+ T NSF V L + + E +++++ Sbjct: 431 IAPTGTLSIIAGCSSGVEPLFALCFVRQVMDGEKLTEANSFFVKALHDQGCYSEKLMAEV 490 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 GS+ N++ +P++L+ ++ T+ +I+P W ++ + QK D A S + L P+ Sbjct: 491 -IEKGSVKNMDFLPEELRNVYVTSMDIEPQWHLKMQAAFQKHTDNAVSKTVNL--PNSAT 547 Query: 885 LDFIYRQAWL 894 + IY+ W+ Sbjct: 548 QEDIYQIYWM 557 >gi|197262131|ref|ZP_03162205.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240386|gb|EDY23006.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 761 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLQEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|200388863|ref|ZP_03215475.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605961|gb|EDZ04506.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 761 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 212/793 (26%), Positives = 343/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE G+ +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NGDSIRKQRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|152971180|ref|YP_001336289.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956029|gb|ABR78059.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 761 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 218/797 (27%), Positives = 340/797 (42%), Gaps = 97/797 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E+G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + L + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581 Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + G+++E W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 582 TYKKDLDGIVSE---------PLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P ++ +K++ G VV + + LW ++ +DG Sbjct: 633 NGIEPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG--------- 677 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891 ++ QK+IDQ+ S N D PSGK +L Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLN 720 Query: 892 AWLMGLKTTYYLRSRSA 908 A+ G+KT YY +R Sbjct: 721 AYKFGVKTLYYHNTRDG 737 >gi|322411233|gb|EFY02141.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 728 Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 205/762 (26%), Positives = 354/762 (46%), Gaps = 104/762 (13%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KK + H + + E RY++E + + ++ L YL + YE+ Sbjct: 15 TRFKKADGSYHFDSDTIAVE---RYLDEHISPNRMMFPSLEVKLAYLIKEGYYEQAIFDP 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF+Y Q D FL++ G+ ++ Q++ ++ G ET +++ + Sbjct: 72 YPDDVIKEAFQYAYQQ---DYRFLNLMGA-MKFYQSYALKTLDGKYYLETVEDRVVMNAL 127 Query: 342 ---------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388 +NL+ F +TPT N+G R + SC+L + D++ I A+ Sbjct: 128 FLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIG 187 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 188 TSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAG 247 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 248 AVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKEMALFSP---Y 304 Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D+ +YGK+ +I+ E Y + IK ISA L++ + + FE+G+P++ F D Sbjct: 305 DIKRVYGKDMSDISITEEYNKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDT 363 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANN 614 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 364 VNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGSINIAEAMA-- 421 Query: 615 QFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + I T++R LD V D++C +IEK +NH A+GLG M L Sbjct: 422 --DAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANH---AVGLGAMNLHGFLATN 476 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 H+ Y S EAV+ D +++HA AS +LA+E+GA++ F+ S + G + + A Sbjct: 477 HLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFKQYVIEDA 536 Query: 731 EVRDE----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + + + L + +LP W L + ++T G+ N++ +A+APT +I+ + + S+ Sbjct: 537 KPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYLSSCTPSL 596 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + V+ + V ++ +N+ + Y++ Sbjct: 597 QPVVAPVEVRKEGNLGRIYVPAYQINQ------------ENYAYYERG------------ 632 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ + + Y Sbjct: 633 -----AYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKLKCASIY 687 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVP---VTDPNSSTHSLGI 940 Y+R R + S D +L+ V +TD N+ S I Sbjct: 688 YVRVRQEV-LAGSEQYDEDSQLDMVDKNGLTDTNNECQSCMI 728 >gi|256751879|ref|ZP_05492751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|256749286|gb|EEU62318.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus CCSD1] Length = 770 Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 185/625 (29%), Positives = 290/625 (46%), Gaps = 84/625 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSFHF 351 ++L RY NG IE + F RVA +A + + + AV+ FY+++ F Sbjct: 9 KVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFYDMMVDLDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V ++ + L P Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N C E L Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSINL + DYDKL T+ AV LDNVID N + + + + Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF + L L IPY S EAV++ +E MEFI + AS++LA++RG Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASIKLAEQRGT 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S++ + I +RN+ IA Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT TI+ I G S I+P + ++ M + VN +R + E ++ ++ Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 GS+ +I+ IP+D+K+I A +IDP W ++ + QK +D A S + + +E + + + Sbjct: 479 R-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910 Y A+ +G K R S S Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562 >gi|238895769|ref|YP_002920505.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|330000611|ref|ZP_08303754.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] gi|238548087|dbj|BAH64438.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537953|gb|EGF64132.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] Length = 761 Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 218/797 (27%), Positives = 340/797 (42%), Gaps = 97/797 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E+G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + L + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQD----DTIRKQRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581 Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + G+++E W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 582 TYKKDLDGIVSE---------PLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P ++ +K++ G VV + + LW ++ +DG Sbjct: 633 NGIEPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG--------- 677 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891 ++ QK+IDQ+ S N D PSGK +L Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLN 720 Query: 892 AWLMGLKTTYYLRSRSA 908 A+ G+KT YY +R Sbjct: 721 AYKFGVKTLYYHNTRDG 737 >gi|237732273|ref|ZP_04562754.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] gi|226907812|gb|EEH93730.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] Length = 761 Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 212/791 (26%), Positives = 344/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K H + +E G Sbjct: 65 AAADLISREAPDYQYLAARLAIFHLRKKAYGEF--EPPKLFDH---------VVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ + Sbjct: 467 FNLGAIES-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N + W++L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-NEPLHMDWEQLRESIKTYGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPNNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|288562861|pdb|2X3I|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|288562862|pdb|2X3I|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|288562863|pdb|2X3I|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|294662322|pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|294662323|pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|294662324|pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli Length = 761 Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|284793845|pdb|2X1Y|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|284793846|pdb|2X1Y|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|284793847|pdb|2X1Y|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|294662301|pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|294662302|pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|294662303|pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|303324818|pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of E. Coli gi|303324819|pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of E. Coli gi|303324820|pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of E. Coli Length = 761 Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|283806799|pdb|2X0Z|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|283806800|pdb|2X0Z|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|283806801|pdb|2X0Z|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|294662294|pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|294662295|pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|294662296|pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|303324811|pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of E. Coli gi|303324812|pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of E. Coli gi|303324813|pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of E. Coli Length = 761 Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|251781890|ref|YP_002996192.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390519|dbj|BAH80978.1| ribonucleoside-diphosphate reductase alphachain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 728 Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 205/763 (26%), Positives = 355/763 (46%), Gaps = 104/763 (13%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KK + H + + E RY++E + L+ ++ L YL + YE+ Sbjct: 15 TRFKKTDGSYHFDSDAIAVE---RYLDEQISPNLVMFPSLEEKLAYLIKEGYYEQAIFDL 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF+Y Q D FL++ G+ ++ Q++ ++ G ET +++ + Sbjct: 72 YPDDVIKEAFQYAYQQ---DYRFLNLMGA-MKFYQSYALKTLDGKYYLETVEDRVVMNAL 127 Query: 342 ---------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388 +NL+ F +TPT N+G R + SC+L + D++ I A+ Sbjct: 128 FLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIG 187 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + L+K GG+ T +R +GA I ++ G++P +K+ D+ NQ G+R+GA Sbjct: 188 TSLQLSKRGGGVALCLTNLREIGAPIKEIENQATGIVPVMKLLEDSFSYANQLGQRQGAG 247 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 248 AVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKEMALFSP---Y 304 Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D+ +YGK+ +I+ E Y + IK ISA L++ + + FE+G+P++ F D Sbjct: 305 DIKRVYGKDMSDISITEEYNKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDT 363 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANN 614 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 364 VNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGSINI----AEA 419 Query: 615 QFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + I T++R LD V D++C +IEK +NH A+GLG M L Sbjct: 420 MTDAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANH---AVGLGAMNLHGFLATN 476 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 H+ Y S EAV+ D +++HA AS +LA+E+GA++ F+ S + G + + A Sbjct: 477 HLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFKQYVIEDA 536 Query: 731 EVRDE----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + + + L + +LP W L + ++T G+ N++ +A+APT +I+ + + S+ Sbjct: 537 KPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYLSSCTPSL 596 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + V+ + V ++ +N+ + Y++ Sbjct: 597 QPVVAPVEVRKEGNLGRIYVPAYQINQ------------ENYAYYERG------------ 632 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ + + Y Sbjct: 633 -----AYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKLKCASIY 687 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 Y+R R + S D +L++V D N T ++ SC Sbjct: 688 YVRVRQEV-LAGSEQYDEDSQLDSV---DKNGLTDTINECQSC 726 >gi|297545362|ref|YP_003677664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843137|gb|ADH61653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 770 Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 185/625 (29%), Positives = 287/625 (45%), Gaps = 84/625 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351 ++L RY NG IE + F RVA +A K + E FY+++ F Sbjct: 9 KVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFYDMMVDLDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K Sbjct: 129 ATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V ++ + L P Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDKKYDLIDPHTG------------------------ 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N C E L Sbjct: 221 ---KVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277 Query: 592 SSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSINL + DYDKL T+ AV LDNVID N + + + + Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYEIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF + L L IPY S EAVE+ ++ MEFI + AS++LA++RG Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEKLMEFIDKTSKEASIKLAEQRGT 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S++ + I +RN+ IA Sbjct: 394 FGFYDKSIYKK-----------------------------------MGINIRNATTTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826 PT TI+ I G S I+P + ++ M V VN +R + + ++ ++ Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKEVAIERGFYSDELMREIA- 477 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 GS+ +I+ IP+D+K++ A +IDP W I+ + QK +D A S + + +E + + + Sbjct: 478 QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHIKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910 Y A+ +G K R S S Sbjct: 538 RKTYLLAYKLGCKGVTIYRDGSRES 562 >gi|2981928|pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli gi|2981930|pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli gi|2981932|pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli Length = 761 Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 212/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC +I L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|2914260|pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli gi|2914262|pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli gi|2914264|pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli Length = 761 Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|82777643|ref|YP_403992.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella dysenteriae Sd197] gi|309785073|ref|ZP_07679706.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1617] gi|81241791|gb|ABB62501.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella dysenteriae Sd197] gi|308927443|gb|EFP72917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1617] Length = 761 Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 213/796 (26%), Positives = 346/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V +L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPELYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|318606421|emb|CBY27919.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 761 Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 210/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ A + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|289526572|pdb|2X5B|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|289526573|pdb|2X5B|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|289526574|pdb|2X5B|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|294662315|pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|294662316|pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|294662317|pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli Length = 761 Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|285803174|pdb|2X33|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|285803175|pdb|2X33|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|285803176|pdb|2X33|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|294662308|pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|294662309|pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|294662310|pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli Length = 761 Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|326391806|ref|ZP_08213324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus JW 200] gi|325992164|gb|EGD50638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus JW 200] Length = 770 Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 184/625 (29%), Positives = 287/625 (45%), Gaps = 84/625 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351 ++L RY NG IE + F RVA +A K + E FY+++ + F Sbjct: 9 KVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFYDMMVALDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V ++ + L P Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N C E L Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSINL + DYDKL T+ AV LDNVID N + + + + Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF + L L IPY S EAVE+ +E M FI + AS++LA++RG Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMGFIDETSKEASIKLAEQRGT 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S++ + I +RN+ IA Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT TI+ I G S I+P + ++ M + VN +R + E ++ ++ Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 GS+ +I+ IP+D+K++ A +IDP W ++ + QK +D A S + + +E + + + Sbjct: 479 R-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910 Y A+ +G K R S S Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562 >gi|2981919|pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli gi|2981921|pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli gi|2981923|pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli Length = 761 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 212/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC +I L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|332702239|ref|ZP_08422327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio africanus str. Walvis Bay] gi|332552388|gb|EGJ49432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio africanus str. Walvis Bay] Length = 744 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 180/619 (29%), Positives = 303/619 (48%), Gaps = 85/619 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHF 351 +L RY +G+ +E Q F RVA +A +E + K A EFY+L++SF F Sbjct: 22 VLRKRYLRKGPDGNPVEDVQGMFWRVASAIASEEVKYAKSSFDVDRLAREFYSLMTSFRF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QL++CF+ V D + IF ++++ A++ K GG G ++ +R G Sbjct: 82 LPNSPTLMNAGTELGQLAACFVLPVGDSMEDIFASVRDAALIHKSGGGTGFSFSRLRREG 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+K+ N V QGG R+GA L H D+ +F+ ++ G+ Sbjct: 142 ARVGSTGGVASGPVSFMKIFNTATEQVKQGGTRRGANMGILRVDHPDILKFISCKEREGE 201 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 ++ N + + + FM+ V + ++L +P + L +E Sbjct: 202 ----LNNFNISVALTEKFMQAVEADEEYSLIAPQNGQEDGRLRARE-------------- 243 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 VF L RK +E+G P I F D N +P G + S+N C E L Sbjct: 244 ----VF-----ALLVRKA----WESGDPGIVFLDRINRDNPTPKQGEIESTNPCGEQPLL 290 Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL + +++ D+D+ AVR LDNVID + + ++K + Sbjct: 291 PYE----ACNLGSINLATIYDPNSDDGIDWDEFKRITHLAVRFLDNVIDASRYPLDKITE 346 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 + +R IGLGLMG+ L L +PY S EA+ + ++ M+F+ + +AS LA+ERGA+ Sbjct: 347 TVGRNRKIGLGLMGWADLLFQLRVPYNSQEALILGEKVMKFLQAESKAASKILAEERGAF 406 Query: 709 SSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 +++ S + D+ V P RN+ IA Sbjct: 407 AAYDESTYADKKVGP-----------------------------------YRNATTTTIA 431 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826 PT T++ I G S I+P + + ++ M G+ V N + L++ + + +A++ D+ Sbjct: 432 PTGTLSIIAGCSSGIEPLFALSFTRNVMDGEKLVEANPYFEQALRETESYSKALMEDVA- 490 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 GSI ++E +PDD++++ TA +++P + ++ + QK+ D A S + L S + + Sbjct: 491 KKGSIAHMELLPDDIRRVFVTAHDVEPTYHLKMQAAFQKFTDNAVSKTVNLPSSASEEDI 550 Query: 886 DFIYRQAWLMGLKTTYYLR 904 IY A+ MG K R Sbjct: 551 REIYWMAYEMGCKGVTVYR 569 >gi|260598670|ref|YP_003211241.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter turicensis z3032] gi|260217847|emb|CBA32363.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Cronobacter turicensis z3032] Length = 774 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 190/678 (28%), Positives = 303/678 (44%), Gaps = 47/678 (6%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 P+ L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ Sbjct: 13 PMNQSLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIH 72 Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 +I ++ LI ++ P+Y + AR + LR++ +P K H + Sbjct: 73 ETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVK 121 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 +E G L + + + + + + RD F Y ++ L +Y + + G E Sbjct: 122 MVELGKYDHHLLQDYSEEEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYES 181 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371 Q ++ VA L +E R FY+ +S+F TP + SG R P Q SSC Sbjct: 182 AQFLYLLVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSC 238 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L D L I G+G + +R LG+ I G G IPF K Sbjct: 239 VLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHF 298 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA + WH++VE L L+ N G + R M+ I L + Sbjct: 299 QTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQ 358 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 R+ + TLFSP +V L+D + EFE Y YE+ E ++I A L+ Sbjct: 359 RLLKGEDITLFSPSDVPGLYDAFFANQDEFERLYTTYEQD----ESIRKQRIKASELFSL 414 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 M+ TG +I D CN SP V V SNLC EI L N S E A+ Sbjct: 415 MMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDDSGEIAL 474 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A + D+L AVR LD ++D + I AK+ R +G+G Sbjct: 475 CTLSAFNLGAIDS-----LDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 529 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 530 VINYAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKG 589 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A + WD L++ +KT G+RNS A+ P+ T + I + Sbjct: 590 ILPIDT---YKKDLDAIA-SEPLHYDWDALRESIKTHGLRNSTLSALMPSETSSQISNAT 645 Query: 780 QSIDPSYQNLYVKSNMSG 797 I+P ++ +K++ G Sbjct: 646 NGIEPPRGHISIKASKDG 663 >gi|78355160|ref|YP_386609.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217565|gb|ABB36914.1| ribonucleoside-diphosphate reductase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 745 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 170/612 (27%), Positives = 288/612 (47%), Gaps = 91/612 (14%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHF 351 +L RY+ +G +E F RVA +A +E + ++ A EFY+L++S+ F Sbjct: 19 VLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYDLMTSWKF 78 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QL++CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 79 LPNSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPAA 138 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + T G + G + FL++ N + QGG R+GA L H D+ EF+ ++ G+ Sbjct: 139 SRVGSTGGVASGPLSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEREGE 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQAD 530 ++ N + + + FMK V + + L +P L +E FEI Sbjct: 199 ----FNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGEAKGTLNAREVFEI---------- 244 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 ++ +E+G P I F D N +P G + S+N C E L Sbjct: 245 ------------------LVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 CNLGS+NL + + D+ +L IR +VR LDNVID + + ++ Sbjct: 287 LPYE----ACNLGSVNLAGLYLAGHGSTADSIDWAELKRIIRLSVRFLDNVIDASRYPLD 342 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + ++ H +R IGLG+MG+ L L IPY S +AV++A MEFI +AS +LA+E Sbjct: 343 RITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLAKE 402 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNC 763 RG + ++ S++ Q + +G RN+ Sbjct: 403 RGPFPAYAESVFGQ-----------------------------------RDLGPYRNATI 427 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMIS 822 IAPT T++ + G S ++P + + + M G+ V VN + LK + E ++ Sbjct: 428 TTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQCYSEKLME 487 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 + GS+ +E +P ++ + TA +I+P+W ++ + Q++ D A S + L P+ Sbjct: 488 AVT-QKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNL--PNS 544 Query: 883 KKLDFIYRQAWL 894 +D I W+ Sbjct: 545 ATIDDIRSIYWM 556 >gi|326784254|ref|YP_004324792.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] gi|310003485|gb|ADO97881.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] Length = 765 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 196/692 (28%), Positives = 319/692 (46%), Gaps = 46/692 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L ++ DG N ++ +VE AC+GL VS V + +DG+ +D++ LI Sbjct: 7 ELHVVKRDGEKEVMNLDKVHAMVEHACNGLAGVSESHVEMNSNLQFFDGIKTADIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY V AR LL LR++V H +C + + Sbjct: 67 RSANDLISLEAPNYQFVAARLLLFGLRKQVYNGHPDGHPPLLEHVKKC---------VGK 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 GV + D + L + + ++RD+ F Y G++ + D+Y + G E PQ Sbjct: 118 GVYDGGILSMYTDEEWEKLNSYIDHDRDYLFTYAGIRQVTDKYLVQDRSTGEIYETPQFM 177 Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 +M VA L + + + ++Y+ +S TP + +G R P Q +SC L V Sbjct: 178 YMMVAATLFQNDDRFYRLEYVKKYYDAISKHRLNIPTPIM--AGVRTPLRQFASCVLVDV 235 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L IF + G+G + +RG+ + I G + GV+PFLK T Sbjct: 236 DDTLDSIFSSDMAIGYYVSQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVR 295 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R N Sbjct: 296 CCTQNGIRGGSATVHFPIWHAEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIAN 355 Query: 497 AGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + +LFSP +V L+D +G +F+ Y + A++ ++ + ++A L+ +L E Sbjct: 356 SVISLFSPHDVPGLYDAFGTDDFDELYCD----AEQNDLIPRKTVNAQKLFLDLLKERAE 411 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLL 608 TG +I D CN S + V+ SNLC EITL + E A+C L +IN+ Sbjct: 412 TGRMYIMNIDHCNTHSSFK--DKVNMSNLCQEITLPTDPIQHIDGGGEIALCILSAINV- 468 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + D+L AVR LD +ID + + AK+S R++G+G +G L Sbjct: 469 ----GKLKNLDELDELCELAVRGLDALIDYQHYPVAAAKQSTINRRSLGIGYIGLAHYLA 524 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 Y S +A ++ + E + ++AS +A E+G F + + G+ PID+ Sbjct: 525 KHGANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYK- 583 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 EV DE+ N S W+ L+ R+ G+R+S A P+ + + + + I+P Sbjct: 584 -KEV-DEIVPNDLS-CDWEYLRGRITEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDY 640 Query: 789 LYVKSNMSGDF-TVVNSFLVNELKQRD--LWD 817 L VK + G +V S+ N LK LWD Sbjct: 641 LSVKKSKKGPLKQIVPSY--NSLKNNYTLLWD 670 >gi|170767383|ref|ZP_02901836.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] gi|170123717|gb|EDS92648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] Length = 761 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 219/801 (27%), Positives = 343/801 (42%), Gaps = 109/801 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISREAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EEITLFSPSDVPGLYDAFFADQEEFERLYTQYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP V V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P YV S D G + ++ Sbjct: 633 NGIEPP--RGYVSIKASKD---------------------------------GILRQVVP 657 Query: 840 DLKKIHATAFEIDPMW-------LIESASRRQKWIDQAQSLNLYLDE---PSGK----KL 885 D + +H A+E+ +W ++ QK+IDQ+ S N D PSGK +L Sbjct: 658 DYEPLH-DAYEL--LWKMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQL 714 Query: 886 DFIYRQAWLMGLKTTYYLRSR 906 A+ G+KT YY +R Sbjct: 715 LKDLLTAYKFGVKTLYYQNTR 735 >gi|320175006|gb|EFW50121.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella dysenteriae CDC 74-1112] Length = 761 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 212/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ ++ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLIMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|13540923|ref|NP_110611.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma volcanium GSS1] Length = 767 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 172/571 (30%), Positives = 276/571 (48%), Gaps = 73/571 (12%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +F ++SS F+ ++PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG Sbjct: 220 KFEEMMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGT 279 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R + T G + G + F+K+ + T + QGGKR+GA L H D+ Sbjct: 280 GFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIM 339 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF+ L K++ + + + N + + D F +++ + L +P Sbjct: 340 EFV-LSKDS--ENKVLSNFNISVGVTDEFFEKLDNDDYVDLINPRTK------------- 383 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 KV ++I A LW ++ ++T P + F D N ++P ++VG + Sbjct: 384 --------------KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIE 429 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 S+N C E L CNLGSINL + DYD+L T+ A R LD+VID N Sbjct: 430 STNPCGEQPLLPYES----CNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANK 485 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+ KK R IGLG+MGF L L +PY S EA+EIA++ M FI+ + AS Sbjct: 486 FPVEQIKKVTRMTRKIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQH 545 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERG + ++ GS W++ + I MRN Sbjct: 546 LAEERGVFPAWYGSEWEK-----------------------------------EGIKMRN 570 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819 S IAPT TI+ I G S SI+P + +V+ ++G + VN + + L+ E Sbjct: 571 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEE 630 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 ++ + G++ NIE I +++KKI TA E+DP W + + Q++ D S + + Sbjct: 631 LMRKVA-ETGNLENIE-INEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKS 688 Query: 880 PSGKK-LDFIYRQAWLMGLKTTYYLRSRSAT 909 + ++ + YR A + K R +S T Sbjct: 689 DATREDIAKAYRMAKDLHCKGITVYRDKSKT 719 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 16/105 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ KI+ AI KA ++V+ G+ R + L ++ V RL + Sbjct: 4 EVVKRDGTVVPFEKGKIAMAIYKAMLSVKN-GSMRD------AETLADKVVERLKNIERP 56 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129 +E IQD VE LM S + + Y+LYRE+R +R Sbjct: 57 T----VEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIR 97 >gi|14324305|dbj|BAB59233.1| ribonucleotide reductase [Thermoplasma volcanium GSS1] Length = 769 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 172/571 (30%), Positives = 276/571 (48%), Gaps = 73/571 (12%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +F ++SS F+ ++PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG Sbjct: 222 KFEEMMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGT 281 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R + T G + G + F+K+ + T + QGGKR+GA L H D+ Sbjct: 282 GFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIM 341 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF+ L K++ + + + N + + D F +++ + L +P Sbjct: 342 EFV-LSKDS--ENKVLSNFNISVGVTDEFFEKLDNDDYVDLINPRTK------------- 385 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 KV ++I A LW ++ ++T P + F D N ++P ++VG + Sbjct: 386 --------------KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIE 431 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 S+N C E L CNLGSINL + DYD+L T+ A R LD+VID N Sbjct: 432 STNPCGEQPLLPYES----CNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANK 487 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+ KK R IGLG+MGF L L +PY S EA+EIA++ M FI+ + AS Sbjct: 488 FPVEQIKKVTRMTRKIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQH 547 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERG + ++ GS W++ + I MRN Sbjct: 548 LAEERGVFPAWYGSEWEK-----------------------------------EGIKMRN 572 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819 S IAPT TI+ I G S SI+P + +V+ ++G + VN + + L+ E Sbjct: 573 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEE 632 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 ++ + G++ NIE I +++KKI TA E+DP W + + Q++ D S + + Sbjct: 633 LMRKVA-ETGNLENIE-INEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKS 690 Query: 880 PSGKK-LDFIYRQAWLMGLKTTYYLRSRSAT 909 + ++ + YR A + K R +S T Sbjct: 691 DATREDIAKAYRMAKDLHCKGITVYRDKSKT 721 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 16/105 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ KI+ AI KA ++V+ G+ R + L ++ V RL + Sbjct: 6 EVVKRDGTVVPFEKGKIAMAIYKAMLSVKN-GSMRD------AETLADKVVERLKNIERP 58 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129 +E IQD VE LM S + + Y+LYRE+R +R Sbjct: 59 T----VEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIR 99 >gi|319789960|ref|YP_004151593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermovibrio ammonificans HB-1] gi|317114462|gb|ADU96952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermovibrio ammonificans HB-1] Length = 568 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 183/632 (28%), Positives = 289/632 (45%), Gaps = 101/632 (15%) Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351 ++IL RY E PQ F RVA ++ E ++ + EF ++ + F Sbjct: 9 IEILKARYL-----RPGETPQELFERVARAVSEAELLYGPASQAARWEEEFLKVMENLEF 63 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QL++CF+ V D + IF ++ A + K GG G ++ +R G Sbjct: 64 LPNSPTLMNAGTPLGQLAACFVLPVEDSIEEIFASVSLMAKIQKTGGGTGFSFSRLRPKG 123 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + TNGK+ G + F+KV N A+ QGGKR+GA L H DV+EF+ + Sbjct: 124 DTVKSTNGKASGPVSFMKVFNCATDAIKQGGKRRGANMGVLSVNHPDVKEFITCK----T 179 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + + N + D F ++ + L +P + Sbjct: 180 DGKSFQNFNISVACTDDFFQKALKGGEIELINPRDG------------------------ 215 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV+ ++ A L + ++TG P I + D N +P +G + ++N C E+ L Sbjct: 216 ---KVWSRVKADELLDLIAESAWKTGDPGILYIDEINRHNPTPALGRIEATNPCGEVPLL 272 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 E CNLGSINL + +++KL ++ AVR LD VID+N + + +K Sbjct: 273 PYEE----CNLGSINLSKIVEKGRINWEKLERLVKVAVRFLDCVIDVNRYPHPEIEKMAK 328 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+MG+ L L IPY S EAVE+A+ M FI+ A AS ELA+++G++ + Sbjct: 329 GNRKIGLGVMGWAELLIELEIPYDSEEAVELAERLMGFINRKAFEASAELAKQKGSFPNI 388 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 S++ R KT +RN+ +IAPT T Sbjct: 389 DKSVY-----------------------------------RGKT--LRNATRTSIAPTGT 411 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I G + SI+P + YVK + G + L+ ++K+ L I G+ Sbjct: 412 ISMIAGTTPSIEPLFAVGYVKRVLGGRRVPFIEPLLMKKVKELSLQQLKEI----LESGT 467 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDF 887 + E IP+ +K+I TA EI P W ++ + QK D A S + L + P K F Sbjct: 468 LQRAEGIPEKIKRIFKTAHEIAPEWHLKIQAAFQKHTDNAVSKTVNLPKSATPEDIKEIF 527 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 I T Y L+ + T + + +GV Sbjct: 528 I----------TGYKLKLKGVTVFREGSKEGV 549 >gi|326783255|ref|YP_004323799.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] gi|310005202|gb|ADO99591.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] Length = 770 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 188/671 (28%), Positives = 305/671 (45%), Gaps = 44/671 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ DG N ++ ++VE AC+GL VS V +DG+ SD++ LI Sbjct: 7 EIQVIKRDGVSEPLNLDKIHVMVEHACNGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + PNY V AR LL LR+ V H E+ R + Sbjct: 67 RSANDLISLDAPNYQFVAARLLLFSLRKAVYNG---------HPNGHPPLREHVERCVSR 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 V + D + L + + ++RD+ F Y G++ + D+Y + +G E PQ Sbjct: 118 SVYDASILSKYTDEEWEKLNSFMDHDRDYLFTYAGVRQVVDKYLVQDRSSGEVYETPQFM 177 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M +A L ++ +K R ++Y+ +S TP + +G R P Q +SC L Sbjct: 178 YMMIAATL-FQDDDKFYRLEYVKKYYDAISKHRINIPTPVM--AGVRTPLRQFASCVLVD 234 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L IF + G+G + +RG+ I G + GV+PFLK T Sbjct: 235 VDDTLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINTKIRGGEVQHTGVVPFLKKFESTV 294 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 Q G R G+ + WH ++E+ + L+ N G + R ++ + + LF +R Sbjct: 295 RCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIA 354 Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N +LFSP +V L+D +G + F+ Y YE E + I A L+ +L Sbjct: 355 NGEISLFSPHDVPGLYDAFGTDSFDDLYVRYESD----EFTPRKTIGAQELFLSLLKERA 410 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSIN 606 ETG ++ D CN S + V+ SNLC EITL + E A+C L +IN Sbjct: 411 ETGRLYLMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPISHIDDPKGEIALCILSAIN 468 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + N D+L AVR LD +ID + +E AK+S R++G+G +G Sbjct: 469 -VGKLKN----LDELDELCDLAVRGLDALIDYQEYPVEAAKQSTTNRRSLGVGYIGLAHY 523 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L Y + +A ++ + E + ++AS LA E+G F + + G+ PID+ Sbjct: 524 LAKHGANYDTYKAQDLVHKLSERFQYALLTASNRLAMEKGPCGYFGKTKYADGILPIDT- 582 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 DE+ N + W+ L+ R+K G+RNS A P+ + + + + I+P Sbjct: 583 --YKNDVDEIVPNDL-QCDWEFLRGRIKEYGLRNSTLSAQMPSESSSVVSNATNGIEPPR 639 Query: 787 QNLYVKSNMSG 797 L +K + G Sbjct: 640 AYLSIKKSKKG 650 >gi|168749637|ref|ZP_02774659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168754981|ref|ZP_02779988.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168767854|ref|ZP_02792861.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168773048|ref|ZP_02798055.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168780083|ref|ZP_02805090.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168798398|ref|ZP_02823405.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|195935608|ref|ZP_03080990.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208806525|ref|ZP_03248862.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208814448|ref|ZP_03255777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208820413|ref|ZP_03260733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209398582|ref|YP_002271640.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|254794125|ref|YP_003078962.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|187771171|gb|EDU35015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188016054|gb|EDU54176.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|189002029|gb|EDU71015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189357729|gb|EDU76148.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189362988|gb|EDU81407.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189378969|gb|EDU97385.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|208726326|gb|EDZ75927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208735725|gb|EDZ84412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208740536|gb|EDZ88218.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209159982|gb|ACI37415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209765532|gb|ACI81078.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|209765536|gb|ACI81080.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|254593525|gb|ACT72886.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|326339581|gb|EGD63392.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1125] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKHFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|15802781|ref|NP_288808.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 EDL933] gi|15832371|ref|NP_311144.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|26248622|ref|NP_754662.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli CFT073] gi|91211527|ref|YP_541513.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UTI89] gi|110642442|ref|YP_670172.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 536] gi|117624428|ref|YP_853341.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli APEC O1] gi|157156706|ref|YP_001463583.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli E24377A] gi|168761334|ref|ZP_02786341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168787140|ref|ZP_02812147.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|170682262|ref|YP_001744430.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SMS-3-5] gi|191170225|ref|ZP_03031779.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] gi|217327968|ref|ZP_03444051.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218559151|ref|YP_002392064.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli S88] gi|218690397|ref|YP_002398609.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ED1a] gi|218695840|ref|YP_002403507.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 55989] gi|218700705|ref|YP_002408334.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI39] gi|218705764|ref|YP_002413283.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UMN026] gi|227887292|ref|ZP_04005097.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|237704710|ref|ZP_04535191.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|261223313|ref|ZP_05937594.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. FRIK2000] gi|261259137|ref|ZP_05951670.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. FRIK966] gi|291283478|ref|YP_003500296.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|293405701|ref|ZP_06649693.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1412] gi|293410598|ref|ZP_06654174.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] gi|293446577|ref|ZP_06662999.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B088] gi|298381382|ref|ZP_06990981.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] gi|300818166|ref|ZP_07098378.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] gi|300822683|ref|ZP_07102821.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 119-7] gi|300897698|ref|ZP_07116096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] gi|300918604|ref|ZP_07135192.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] gi|300936791|ref|ZP_07151684.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] gi|300981253|ref|ZP_07175430.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] gi|300983267|ref|ZP_07176506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|301022394|ref|ZP_07186278.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] gi|301048986|ref|ZP_07195973.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|306814653|ref|ZP_07448815.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] gi|312967535|ref|ZP_07781750.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|331647889|ref|ZP_08348981.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] gi|331658315|ref|ZP_08359277.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] gi|331663741|ref|ZP_08364651.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] gi|331678185|ref|ZP_08378860.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] gi|331683910|ref|ZP_08384506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] gi|12516569|gb|AAG57363.1|AE005455_4 ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Escherichia coli O157:H7 str. EDL933] gi|26109027|gb|AAN81230.1|AE016763_189 Ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli CFT073] gi|13362586|dbj|BAB36540.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|91073101|gb|ABE07982.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Escherichia coli UTI89] gi|110344034|gb|ABG70271.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli 536] gi|115513552|gb|ABJ01627.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli APEC O1] gi|157078736|gb|ABV18444.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E24377A] gi|170519980|gb|ACB18158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli SMS-3-5] gi|189368234|gb|EDU86650.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189372942|gb|EDU91358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|190909741|gb|EDV69326.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] gi|209765528|gb|ACI81076.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|209765530|gb|ACI81077.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|209765534|gb|ACI81079.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|217320335|gb|EEC28760.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218352572|emb|CAU98351.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli 55989] gi|218365920|emb|CAR03662.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli S88] gi|218370691|emb|CAR18502.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli IAI39] gi|218427961|emb|CAR08881.2| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli ED1a] gi|218432861|emb|CAR13755.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli UMN026] gi|222033995|emb|CAP76736.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli LF82] gi|226901076|gb|EEH87335.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|227835642|gb|EEJ46108.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|281179325|dbj|BAI55655.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia coli SE15] gi|284922225|emb|CBG35307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli 042] gi|290763351|gb|ADD57312.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|291323407|gb|EFE62835.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B088] gi|291427909|gb|EFF00936.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1412] gi|291471066|gb|EFF13550.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] gi|294492897|gb|ADE91653.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli IHE3034] gi|298278824|gb|EFI20338.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] gi|300299178|gb|EFJ55563.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|300307617|gb|EFJ62137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] gi|300358576|gb|EFJ74446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] gi|300397544|gb|EFJ81082.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] gi|300408601|gb|EFJ92139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|300414256|gb|EFJ97566.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] gi|300458121|gb|EFK21614.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] gi|300524883|gb|EFK45952.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 119-7] gi|300529310|gb|EFK50372.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] gi|305852047|gb|EFM52499.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] gi|307554300|gb|ADN47075.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli ABU 83972] gi|312287732|gb|EFR15637.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|312946855|gb|ADR27682.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|315285848|gb|EFU45288.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 110-3] gi|315292182|gb|EFU51534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 153-1] gi|315298060|gb|EFU57329.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 16-3] gi|320192145|gb|EFW66790.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC1212] gi|320196103|gb|EFW70727.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli WV_060327] gi|320641060|gb|EFX10539.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. G5101] gi|320646449|gb|EFX15368.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320651546|gb|EFX19926.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320657298|gb|EFX25100.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663125|gb|EFX30438.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320667817|gb|EFX34725.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|323184147|gb|EFZ69524.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1357] gi|323188038|gb|EFZ73333.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli RN587/1] gi|323945043|gb|EGB41108.1| ribonucleotide reductase [Escherichia coli H120] gi|323956003|gb|EGB51756.1| ribonucleotide reductase [Escherichia coli H263] gi|323967676|gb|EGB63088.1| ribonucleotide reductase [Escherichia coli M863] gi|323977568|gb|EGB72654.1| ribonucleotide reductase [Escherichia coli TW10509] gi|324006610|gb|EGB75829.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 57-2] gi|324013120|gb|EGB82339.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 60-1] gi|325496726|gb|EGC94585.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ECD227] gi|326344043|gb|EGD67804.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1044] gi|327252503|gb|EGE64162.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli STEC_7v] gi|330912065|gb|EGH40575.1| ribonucleotide reductase of class 1a (aerobic), alpha subunit [Escherichia coli AA86] gi|331043613|gb|EGI15751.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] gi|331056563|gb|EGI28572.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] gi|331059540|gb|EGI31517.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] gi|331074645|gb|EGI45965.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] gi|331078862|gb|EGI50064.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|258624429|ref|ZP_05719376.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM603] gi|258583276|gb|EEW08078.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM603] Length = 760 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE IK + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L +S S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A++S+ R +G+G++ + Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L WD+L+ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PS KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATSVEKS 914 G+KT YY +R E++ Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743 >gi|300903616|ref|ZP_07121534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|301303306|ref|ZP_07209431.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|300404352|gb|EFJ87890.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|300841480|gb|EFK69240.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|315255169|gb|EFU35137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 85-1] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|324112771|gb|EGC06747.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|110806204|ref|YP_689724.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 5 str. 8401] gi|110615752|gb|ABF04419.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella flexneri 5 str. 8401] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDVSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|24113614|ref|NP_708124.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 301] gi|30063668|ref|NP_837839.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 2457T] gi|24052671|gb|AAN43831.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella flexneri 2a str. 301] gi|30041923|gb|AAP17649.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella flexneri 2a str. 2457T] gi|281601679|gb|ADA74663.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017] gi|313651059|gb|EFS15458.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2a str. 2457T] gi|332754882|gb|EGJ85247.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 4343-70] gi|332755285|gb|EGJ85649.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-671] gi|332756581|gb|EGJ86932.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2747-71] gi|332766055|gb|EGJ96265.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2930-71] gi|333001381|gb|EGK20949.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri VA-6] gi|333002008|gb|EGK21574.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-218] gi|333002602|gb|EGK22162.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-272] gi|333016363|gb|EGK35694.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-304] gi|333016744|gb|EGK36072.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-227] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|156933157|ref|YP_001437073.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|156531411|gb|ABU76237.1| hypothetical protein ESA_00967 [Cronobacter sakazakii ATCC BAA-894] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 211/792 (26%), Positives = 346/792 (43%), Gaps = 85/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L + + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDHHLLQDYSEDEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ E ++I A L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTRYEQD----ESIRKQRIKASELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIES-----LDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A + W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-SEPLHYDWESLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ +K++ G ++ + + + +D ++ ++ ++ +DG Sbjct: 638 PRGHISIKASKDG---ILRQVVPDYEQLKDQYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ +G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKLGV 726 Query: 898 KTTYYLRSRSAT 909 KT YY +R Sbjct: 727 KTLYYQNTRDGA 738 >gi|332162348|ref|YP_004298925.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666578|gb|ADZ43222.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864219|emb|CBX74277.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Yersinia enterocolitica W22703] Length = 761 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 209/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ A + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|294637128|ref|ZP_06715437.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda ATCC 23685] gi|291089662|gb|EFE22223.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda ATCC 23685] Length = 760 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 220/795 (27%), Positives = 342/795 (43%), Gaps = 91/795 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K H R +E G Sbjct: 65 AAADLISRETPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDH---------VVRLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDRHLLEDFSRDEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSHYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ Q Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + RKI AV L+ M+ Sbjct: 351 GEITLFSPSDVPGLYDAFFADQNEFERLYVQYEQDSRIRQ----RKIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC E+ L N S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEVALPTKPLEDVNDESGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ D ++LA+ AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS +LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHQLAREQGACPWFNETRYAQGILPID 581 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L A + L + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 582 NYKKDLDAICAEPLHYD------WETLRADIVRDGLRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + +K++ G VV + + LW L +DG Sbjct: 636 EPPRGYISIKASKDGILRQVVPEYERLQEAYELLW------SLPNNDG------------ 677 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWL 894 ++ QK+IDQA S N D PSG K+L A+ Sbjct: 678 --------------YLQLVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSRSAT 909 +G+KT YY +R Sbjct: 724 LGVKTLYYQNTRDGA 738 >gi|2981911|pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli gi|2981913|pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli gi|2981915|pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli Length = 761 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 212/791 (26%), Positives = 344/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC I L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|331673747|ref|ZP_08374510.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] gi|331069020|gb|EGI40412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] Length = 761 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|306827910|ref|ZP_07461177.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes ATCC 10782] gi|304429829|gb|EFM32871.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes ATCC 10782] Length = 726 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 212/780 (27%), Positives = 350/780 (44%), Gaps = 131/780 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK+ +I+ E Y++ IK ISA ++ + + FE+G+P++ F D Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 HI Y + EAV+ D ++++A AS +LA+E+GA++ F S + G + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528 Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 A+ E A +T++ LP W L +K G+ N++ +A+APT +I+ Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWKALVADIKQFGLANAHLLAVAPTGSISY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ S V ++ +++ ++ Y++ Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S S TEC+ C Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPEASDEST---------TECQSC 724 >gi|82544521|ref|YP_408468.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii Sb227] gi|81245932|gb|ABB66640.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella boydii Sb227] gi|320184865|gb|EFW59653.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri CDC 796-83] gi|332094119|gb|EGI99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii 3594-74] Length = 761 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 212/791 (26%), Positives = 344/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+G F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|116754614|ref|YP_843732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta thermophila PT] gi|116666065|gb|ABK15092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta thermophila PT] Length = 688 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 180/635 (28%), Positives = 289/635 (45%), Gaps = 90/635 (14%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRA 339 +A+DLK + +++L RY G+ +E P F RVA ++ E E A Sbjct: 114 VADDLKLSVN------AIEVLKKRYLKRDEFGNVVETPGEMFERVASAVSAVERRYEGDA 167 Query: 340 ----VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 +F +++ S F+ ++PTL N+G QLS+CF+ V D + GIF AL+ A++ + Sbjct: 168 DDARKKFLSMMRSLSFLPNSPTLMNAGLPLGQLSACFVVPVEDSIAGIFDALKYMALIHQ 227 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG G ++ +R G + T G + G + F+++ + + QGG+R+GA L Sbjct: 228 SGGGTGFSFSRLRPKGDVVRSTGGIASGPVSFMRIFDAATDVIKQGGRRRGANMGILRVD 287 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EF+ + G D + N + I + FM++ ++ L +P ++ Sbjct: 288 HPDITEFIACKDRGGMD-----NFNISVAITEEFMRQCERDGSVELINPRTGEATGEMSA 342 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 ++ + Y WR+ G P + F D N P Sbjct: 343 RDLMVMMATYA-------------------WRR--------GDPGVVFIDRINALHPVP- 374 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 G++ ++N C E L CNLGS+NL + +D+L T+R AVR LD+V Sbjct: 375 -GIIEATNPCGEQPLLPFES----CNLGSVNLSRMVERGEISWDRLEETVRLAVRFLDDV 429 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N +++ + + R IGLG+MGF L L + YAS +A+ IA+E M FI+ A Sbjct: 430 IDANRFPLKQIEDATLRTRKIGLGVMGFAEMLIQLGVSYASQDALRIAEELMAFITKTAR 489 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 S L +ERG++ F+ S + WD Sbjct: 490 EESCALGRERGSFPLFEESSLKK---------------------------WD-------- 514 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRD 814 MRN+ IAPT TI+ I G S I+P + +V+ + G + +S L + +R Sbjct: 515 -AMRNATVTTIAPTGTISIIAGTSSGIEPLFAVSFVRHVLEGARLIESSPLFERMASERG 573 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + A+ +++ GSI I IPDD+K++ TA +I P + + QK D A S Sbjct: 574 IMTPALRAEVARR-GSIQEIPGIPDDIKELFLTALDISPEQHVRIQAAFQKHTDNAVSKT 632 Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSR 906 + L E S + +YR A+ +G K T Y SR Sbjct: 633 VNLPEKASVSDVIKVYRLAYELGCKGITVYRYGSR 667 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 16/109 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 ++ KR+G + FDPS+ISRAI KAF A+ E + RV D++ + Sbjct: 15 RIRKRDGRIVDFDPSRISRAISKAFNALGIVDEKTPVELAGRVVDVVDERFRDEIP---- 70 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 +ED+QD VE L+ +G+ ++ + Y+LYR+ RS++R A+ + Sbjct: 71 --------SVEDVQDIVEEVLIDAGYAQVAKAYILYRQRRSEIREAKHY 111 >gi|20808702|ref|NP_623873.1| ribonucleotide reductase alpha subunit [Thermoanaerobacter tengcongensis MB4] gi|20517341|gb|AAM25477.1| Ribonucleotide reductase alpha subunit [Thermoanaerobacter tengcongensis MB4] Length = 691 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 166/556 (29%), Positives = 272/556 (48%), Gaps = 65/556 (11%) Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVP- 377 F RVA +A E E+E FY ++S + F+ L +GT R +CF+ V Sbjct: 1 MFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGRILAGAGTGREVTYFNCFVIPVEA 56 Query: 378 -------DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 D I + + + GG+G +W+ +R GA++ G G S G + ++ Sbjct: 57 NDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTLRPRGAYVKGVGGTSSGAVSWMLA 116 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 AN+ A V QGG R+ A+ L WH D+EEF+ ++K D + N + + D FM Sbjct: 117 ANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK----DLTKMQQANLSVAVSDAFM 172 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + V Q+ W L PD H Y E++ + E +A V+++I A LW K++ Sbjct: 173 EAVAQDKMWKLEFPDTS---HPNYDAEWK--GDLNEWKAKGYPTVVYKEIPARELWNKIV 227 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 T +E+ P + F + N S ++ + S+N C E+ L E VCNLG+INL+A Sbjct: 228 TAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGELGL----EPYGVCNLGAINLVAF 283 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + ++++L T++ AVR LDNV+D+ + + + K+ R +GLGLMG AL L+ Sbjct: 284 VENGKINFEELEETVKIAVRFLDNVLDLGAYVLPQNKEMAQKLRRVGLGLMGLADALILM 343 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 ++ Y S E+++ +E + I A ASVELA+E+G + F + +G F Sbjct: 344 NLRYGSEESLKATEEIVRRIRDAAYRASVELAKEKGPFPEFVADKYLKGQF--------- 394 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 RLP D ++ + G+RN+ + APT T + + GVS I+P++ Y Sbjct: 395 ----------IQRLPKD-IRDEIAKYGIRNATILTQAPTGTTSILAGVSSGIEPNFAKEY 443 Query: 791 VKSNMSGDFTV----------VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP-- 838 V+ + +G TV V++ V + + +A++ KY D SI +P Sbjct: 444 VRKDRTGTHTVKHWLADYPAFVSAHEVTPEEHVKM--QAVLQ--KYIDSSISKTINLPRT 499 Query: 839 ---DDLKKIHATAFEI 851 DD+ I+ A+E+ Sbjct: 500 ATVDDIDNIYRLAYEL 515 >gi|262165507|ref|ZP_06033244.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus VM223] gi|262025223|gb|EEY43891.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus VM223] Length = 760 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE IK + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L +S S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A++S+ R +G+G++ + Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L WD+L+ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PS KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFASGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATSVEKS 914 G+KT YY +R E++ Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743 >gi|59711809|ref|YP_204585.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio fischeri ES114] gi|59479910|gb|AAW85697.1| ribonucleoside diphosphate reductase 1, alpha subunit [Vibrio fischeri ES114] Length = 758 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 215/796 (27%), Positives = 341/796 (42%), Gaps = 89/796 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G+ N ++ ++ A GL +VS V +++ YDG+ SD+ +I Sbjct: 4 QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ +P +H + IE Sbjct: 64 KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQF--EPPTLFNHVLNL---------IEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E + + + + RD F Y ++ L +YF+ + G+ E Q Sbjct: 113 GKYDKHIVEDYTQEEFALMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K + + FY+ S F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAKYPKDTRLDYIKRFYDATSQFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 DDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 291 CCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTM 552 +LFSP +V L+D + EFE YE YE+ + + R+ + A+ L+ ++ Sbjct: 351 GNISLFSPSDVPGLYDAFFADQAEFERLYEKYEQ-----DTSIKRETVKAIELFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V V SNLC EI L N E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A +L AVR LD ++D + + A KS R +G+G++ + Sbjct: 466 AFNLGAIEKLE-----ELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + ++ E I ++ + ASV LA+E+GA +F + + QG+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPI 580 Query: 724 DSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 DS +D A+ N L W+ L++ +KT G+RNS A+ P+ T + I + I Sbjct: 581 DSYK-----KDIDAICNEELHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGFVSVKASKDGILKQVVPDFANLKNNYELLW------NIGSNDG------------ 677 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AWL 894 ++ QK++DQA S N D +P+GK + + + A+ Sbjct: 678 --------------YLQLVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATS 910 +GLKT YY +R S Sbjct: 724 LGLKTLYYHNTRDGAS 739 >gi|218548312|ref|YP_002382103.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ATCC 35469] gi|218355853|emb|CAQ88466.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia fergusonii ATCC 35469] Length = 761 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEQLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|57234550|ref|YP_181365.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] gi|57224998|gb|AAW40055.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] Length = 599 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 188/648 (29%), Positives = 308/648 (47%), Gaps = 97/648 (14%) Query: 299 QILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFHF 351 ++L RY NG IE P+ F RVA +A E + A EFY +S F Sbjct: 22 RVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEFYQAMSRLEF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ +R G Sbjct: 82 LPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSNLRPAG 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + G + + + + A V QGG R+G A L+ H D+ +F+ + GD Sbjct: 142 DKVGELTEVAGGPVSVINIFSAAADYVRQGGVRRGCNAAILDVTHPDILKFISCK---GD 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 T + + + FM +V + + +P Sbjct: 199 PNALT-NFYISVVVTREFMTKVRSGEDYDIINPHT------------------------- 232 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V ++++A ++ ++ ++TG P + F D N +P +G + + C E TL Sbjct: 233 GE--VVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHVSGCGEQTLL 290 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSI+L + DY+KL T++ A+R LDNVID+N + + Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNRFPTPEIE 346 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K+ +R IGLG+MGF L L+ IPY S EA+ AD+ MEFI + AS +LA+ RG+ Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKLAEARGS 406 Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + +++GS++D G P MRN+ C +I Sbjct: 407 FPAYEGSIYDVPGGRP-----------------------------------MRNATCTSI 431 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821 APT T++ I GVS I+PS+ ++V++ + G+ + + E+ +R+ + E ++ Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSKELFEKLV 491 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880 S HD +E +PD LK++ TA I P W I + QK+ D A S + + E Sbjct: 492 SSNHLHD-----MECVPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFSHEA 546 Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924 + + + ++ A+ GLK T Y SR+A + +S +K VD L+ Sbjct: 547 TREDMANVFNLAYDKGLKGITVYRDGSRAAQPLCTSESGVKLVDQYLD 594 >gi|15674554|ref|NP_268728.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes M1 GAS] gi|71910162|ref|YP_281712.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS5005] gi|13621660|gb|AAK33449.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus pyogenes M1 GAS] gi|71852944|gb|AAZ50967.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS5005] Length = 726 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/780 (27%), Positives = 350/780 (44%), Gaps = 131/780 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK+ +I+ E Y++ IK ISA ++ + + FE+G+P++ F D Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 HI Y + EAV+ D ++++A AS +LA+E+GA++ F S + G + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYSDGTY-------F 528 Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 A+ E A +T++ LP W L +K G+ N++ +A+APT +I+ Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ S V ++ +++ ++ Y++ Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S + TEC+ C Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724 >gi|94989857|ref|YP_597957.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10270] gi|94543365|gb|ABF33413.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10270] Length = 726 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/780 (27%), Positives = 351/780 (45%), Gaps = 131/780 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKHYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ +YGK+ +I+ E Y++ IK ISA ++ + + FE+G+P++ F D Sbjct: 304 YDIKRVYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 HI Y + EAV+ D ++++A AS +LA+E+GA++ F S + G + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528 Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 A+ E A +T++ LP W L +K G+ N++ +A+APT +I+ Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ S V ++ +++ ++ Y++ Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S + TEC+ C Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECQSC 724 >gi|253687497|ref|YP_003016687.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754075|gb|ACT12151.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 761 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 212/793 (26%), Positives = 344/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 5 LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ ++ P TH + +E G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A N+ D ++LA+ AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGA--INSLDDLEELAT---LAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + RD A+ N L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----RDLDAICNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ VK++ G ++ + +D ++ ++ ++ +DG Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWEMPSNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L A+ G Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGKVPMKQLLKDLVTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|258620210|ref|ZP_05715249.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM573] gi|262171720|ref|ZP_06039398.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus MB-451] gi|258587568|gb|EEW12278.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM573] gi|261892796|gb|EEY38782.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus MB-451] Length = 760 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE IK + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L +S S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A++S+ R +G+G++ + Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L WD+L+ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PS KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATSVEKS 914 G+KT YY +R E++ Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743 >gi|16765604|ref|NP_461219.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992611|ref|ZP_02573708.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|585857|sp|P37426|RIR1_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha; AltName: Full=Protein B1; AltName: Full=Ribonucleoside-diphosphate reductase 1 R1 subunit; AltName: Full=Ribonucleotide reductase 1 gi|295896|emb|CAA51452.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420816|gb|AAL21178.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329161|gb|EDZ15925.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247485|emb|CBG25312.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994367|gb|ACY89252.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158835|emb|CBW18348.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913267|dbj|BAJ37241.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223023|gb|EFX48094.1| Ribonucleotide reductase of class Ia aerobic, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130607|gb|ADX18037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989210|gb|AEF08193.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 761 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|168237292|ref|ZP_02662350.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197289598|gb|EDY28961.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 761 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|331653668|ref|ZP_08354669.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] gi|331048517|gb|EGI20593.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] Length = 761 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|108805660|ref|YP_645597.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrobacter xylanophilus DSM 9941] gi|108766903|gb|ABG05785.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rubrobacter xylanophilus DSM 9941] Length = 747 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 176/624 (28%), Positives = 287/624 (45%), Gaps = 86/624 (13%) Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE----KEKRAV------EFYNLL 346 L +L RY + G +E P F RVA +A E + +E RA+ F ++ Sbjct: 20 LAVLRKRYLKKNDRGEPVERPVDMFRRVAGNIAEAELKFRDGEEGRALYEEYYGRFLQMM 79 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S FM ++PTL N+G QLS+CF+ V D + GI+ L+ A++ K GG G ++ Sbjct: 80 LSRRFMPNSPTLMNAGRELQQLSACFVLPVEDSIDGIYDTLKHQAIIHKSGGGTGFAFSR 139 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R + T G S G + F+ + + + + QGG R+GA L H D+EEF+ + Sbjct: 140 LRPKNDIVQSTMGVSSGPVSFMAIYDASTDKIKQGGTRRGANMGILRVDHPDIEEFVTCK 199 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 +D + + N + I D FM+ V ++ + L +P + Sbjct: 200 ----NDNDQITNFNISVAITDAFMEAVEKDGEFELVNPRNGA------------------ 237 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 V R++ A L++K+ + G P + F D N +P + S+N C+ Sbjct: 238 ---------VTRRVRARELFKKIAYGAWLNGEPGVVFIDRINADNPTPQF-PIESTNPCS 287 Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 E L CNLGSINL ++ D+++L T+RTAVR LDNVI+ N + + Sbjct: 288 EAHLPPYDS----CNLGSINLSLFYSEEAGDVDWEELRETVRTAVRFLDNVIEQNNYPLP 343 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + ++ + +R IGLG+MGF L + IPY S E + A+ M FI A AS LA E Sbjct: 344 QIEEMSKGNRRIGLGVMGFADLLIKMGIPYDSEEGLAFAERVMRFIDEEAWEASRALAAE 403 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RG ++ ++GS R E +R +RN+ Sbjct: 404 RGVFAHYEGS------------------RHEARGDR-----------------VRNATVT 428 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ I G S I+P Y +++ + VN V ++R + E ++ + Sbjct: 429 TIAPTGTISLIAGCSGGIEPLYAVAFMRRQADMEMPDVNPEFVRVARERGFYSEELMKKV 488 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 GS+ +E +P+D++++ T+ +I P W + + QK S + L +E + + Sbjct: 489 A-EQGSVRGLEEVPEDVRRVWVTSHDISPEWHVRMQAAFQKHTSMGISKTINLPNEATVE 547 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ YR A+ +G K R S Sbjct: 548 DVERAYRLAYSLGCKGIAVYRDGS 571 >gi|238913486|ref|ZP_04657323.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 761 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPIVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|56412826|ref|YP_149901.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180850|ref|YP_217267.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168261710|ref|ZP_02683683.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466026|ref|ZP_02699896.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817992|ref|ZP_02829992.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197361759|ref|YP_002141395.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127083|gb|AAV76589.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128483|gb|AAX66186.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|195631245|gb|EDX49805.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093235|emb|CAR58680.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205344941|gb|EDZ31705.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349577|gb|EDZ36208.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320086714|emb|CBY96486.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715326|gb|EFZ06897.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 761 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|15641269|ref|NP_230901.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590732|ref|ZP_01678063.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 2740-80] gi|121729794|ref|ZP_01682230.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae V52] gi|147674951|ref|YP_001216821.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae O395] gi|153212312|ref|ZP_01948100.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 1587] gi|153823599|ref|ZP_01976266.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae B33] gi|153827302|ref|ZP_01979969.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-2] gi|153829751|ref|ZP_01982418.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 623-39] gi|227081428|ref|YP_002809979.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae M66-2] gi|229505157|ref|ZP_04394667.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae BX 330286] gi|229511171|ref|ZP_04400650.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae B33] gi|229515629|ref|ZP_04405088.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TMA 21] gi|229518290|ref|ZP_04407734.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC9] gi|229521369|ref|ZP_04410788.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TM 11079-80] gi|229525855|ref|ZP_04415260.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229529664|ref|ZP_04419054.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae 12129(1)] gi|229608177|ref|YP_002878825.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae MJ-1236] gi|254291707|ref|ZP_04962494.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae AM-19226] gi|254848380|ref|ZP_05237730.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|255745653|ref|ZP_05419601.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholera CIRS 101] gi|262159071|ref|ZP_06030183.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae INDRE 91/1] gi|262169429|ref|ZP_06037121.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC27] gi|262191405|ref|ZP_06049593.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae CT 5369-93] gi|297578848|ref|ZP_06940776.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385] gi|298498652|ref|ZP_07008459.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757] gi|9655739|gb|AAF94415.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547413|gb|EAX57524.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 2740-80] gi|121628469|gb|EAX60959.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae V52] gi|124116690|gb|EAY35510.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 1587] gi|126518878|gb|EAZ76101.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae B33] gi|146316834|gb|ABQ21373.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae O395] gi|148874785|gb|EDL72920.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 623-39] gi|149738793|gb|EDM53135.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-2] gi|150422391|gb|EDN14351.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae AM-19226] gi|227009316|gb|ACP05528.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae M66-2] gi|227013173|gb|ACP09383.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae O395] gi|229333438|gb|EEN98924.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae 12129(1)] gi|229339436|gb|EEO04453.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229341467|gb|EEO06470.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TM 11079-80] gi|229345005|gb|EEO09979.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC9] gi|229347398|gb|EEO12358.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TMA 21] gi|229351136|gb|EEO16077.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae B33] gi|229357380|gb|EEO22297.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae BX 330286] gi|229370832|gb|ACQ61255.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae MJ-1236] gi|254844085|gb|EET22499.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|255736728|gb|EET92125.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholera CIRS 101] gi|262022242|gb|EEY40951.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC27] gi|262029256|gb|EEY47908.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae INDRE 91/1] gi|262032694|gb|EEY51244.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae CT 5369-93] gi|297536442|gb|EFH75275.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385] gi|297542985|gb|EFH79035.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757] gi|327483945|gb|AEA78352.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Vibrio cholerae LMA3894-4] Length = 761 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE IK + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L +S S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A++S+ R +G+G++ + Sbjct: 466 AFNLGA--IESLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L WD+L+ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRLKENYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PS KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATSVEKS 914 G+KT YY +R E++ Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743 >gi|21909839|ref|NP_664107.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS315] gi|28896466|ref|NP_802816.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes SSI-1] gi|71903002|ref|YP_279805.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS6180] gi|139474320|ref|YP_001129036.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes str. Manfredo] gi|21904025|gb|AAM78910.1| putative ribonucleoside-diphosphate reductase large chain [Streptococcus pyogenes MGAS315] gi|28811717|dbj|BAC64649.1| putative ribonucleoside diphosphate reductase, large chain [Streptococcus pyogenes SSI-1] gi|71802097|gb|AAX71450.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS6180] gi|134272567|emb|CAM30833.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus pyogenes str. Manfredo] Length = 726 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/780 (27%), Positives = 350/780 (44%), Gaps = 131/780 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK+ +I+ E Y++ IK ISA ++ + + FE+G+P++ F D Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 HI Y + EAV+ D ++++A AS +LA+E+GA++ F S + G + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528 Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 A+ E A +T++ LP W L +K G+ N++ +A+APT +I+ Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ S V ++ +++ ++ Y++ Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S + TEC+ C Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724 >gi|194444716|ref|YP_002041538.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403379|gb|ACF63601.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 761 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 211/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLSYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|309807847|ref|ZP_07701779.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 01V1-a] gi|309809738|ref|ZP_07703592.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 2503V10-D] gi|325913648|ref|ZP_08176010.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 60-B] gi|329919792|ref|ZP_08276743.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 1401G] gi|308168949|gb|EFO71035.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 01V1-a] gi|308169917|gb|EFO71956.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 2503V10-D] gi|325477007|gb|EGC80157.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 60-B] gi|328937139|gb|EGG33567.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 1401G] Length = 725 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 318/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y++ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N ++ K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|19745565|ref|NP_606701.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS8232] gi|19747688|gb|AAL97200.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus pyogenes MGAS8232] Length = 726 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 208/773 (26%), Positives = 348/773 (45%), Gaps = 117/773 (15%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPDQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK+ +I+ E Y++ IK ISA ++ + + FE+G+P++ F D Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG+M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVEAGNAANH---AVGLGVMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--- 726 HI Y + EAV+ D ++++A AS +LA+E+GA++ F S + G + + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQED 535 Query: 727 -----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 +A + + + W L +K G+ N++ +A+APT +I+ + + S Sbjct: 536 VKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPS 595 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 + P + V+ S V ++ +++ ++ Y+ ER Sbjct: 596 LQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYY-------ER----- 631 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ + Sbjct: 632 -----GAYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASI 686 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YY+R R + L G + VT P +S + TEC+ C Sbjct: 687 YYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724 >gi|212635282|ref|YP_002311807.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella piezotolerans WP3] gi|212556766|gb|ACJ29220.1| Ribonucleoside-diphosphate reductase [Shewanella piezotolerans WP3] Length = 801 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 212/777 (27%), Positives = 344/777 (44%), Gaps = 85/777 (10%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++E A GL +VS V ++ ++G+ + +I ++ LI E P+Y + Sbjct: 60 KIHRVIEWAAKGLTNVSVSEVELRSHLQFFEGIPTEAIHETIIKAAADLISPEAPDYQFL 119 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ +P K H + IE G + E ++ Sbjct: 120 AARLAIFHLRKKAFGQF--EPPKLYDH---------VVKLIELGKYDAHILEDYSREEID 168 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK--ETEK 335 L + + RD F Y ++ L +Y + ++ E Q ++ VA L K + + Sbjct: 169 ILGGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLYILVAACLFAKYPKETR 228 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAML 393 K +FY+ S+F TP + +G R P Q SSC L D L I Sbjct: 229 LKYIKDFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSSIVKY 286 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 287 VSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFYP 346 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH++VE L L+ N G D R ++ I L +R+ Q +LFSP +V ++D Sbjct: 347 IWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKLMYQRMIQGGMISLFSPSDVPGMYDA 406 Query: 514 Y---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + +EFE Y YE AD K +++ AV L+ M+ TG +I D CN Sbjct: 407 FFEDQEEFERLYLKYE--ADESIRK--QQVKAVELFSLMMQERASTGRIYIQNVDHCNTH 462 Query: 571 SP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 SP V V SNLC EI L N E A+C L ++NL A N + + L Sbjct: 463 SPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNLGA--IKNLEELEPL 520 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 A AVR LDN++D + I A+K++ R +G+G++ F + L + Y+ A Sbjct: 521 AD---LAVRALDNLLDYQDYPIISAEKASMNRRTLGIGVINFANYLAKEGVRYSDGSANS 577 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMNR 740 I ++ E I ++ + AS LA+E+GA SF + + +G+ PID+ L ++ DE Sbjct: 578 ITHKTFEAIQYYLLKASNNLAKEQGACPSFHETTYSKGILPIDTYKRDLDKICDE----- 632 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ L++ +KT G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 633 PLHMDWESLREEIKTHGLRNSTVSALMPSETSSQISNATNGIEPPRGLISVKASKDG--- 689 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +LKQ ++ D + S + ++P++ I Sbjct: 690 --------QLKQ-------VVPDFDKYQYSYELLWQMPNNDGYIQLVGL----------- 723 Query: 861 SRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGLKTTYYLRSRSATS 910 QK++DQ+ S N D P GK + + + A+ G+KT YY +R S Sbjct: 724 --MQKFVDQSISANTNYDPGRFPDGKVPMKVLLKDLLTAYKYGVKTLYYHNTRDGAS 778 >gi|73748461|ref|YP_307700.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] gi|73660177|emb|CAI82784.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] Length = 599 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 188/648 (29%), Positives = 306/648 (47%), Gaps = 97/648 (14%) Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351 ++L RY + R IE P+ F RVA +A E T+ + EFY +S F Sbjct: 22 RVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQAMSRLEF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ +R G Sbjct: 82 LPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + G + + + A V QGG R+G A L+ H D+ F+ + GD Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISCK---GD 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 T+ + D FM +V + + +P Sbjct: 199 PNALTNFYISVVVTRD-FMTKVRSGEDYDIINPHT------------------------- 232 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V R+++A ++ ++ ++TG P + F D N +P + + + C E TL Sbjct: 233 GE--VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGCGEQTLL 290 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSI+L + DY+KL T++ A+R LDNVID+N + + Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K+ +R IGLG+MGF L L+ IPY S EA+ AD+ M+FI + AS +LA+ RG+ Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKLAEIRGS 406 Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + +++GS++D G P MRN+ C +I Sbjct: 407 FPAYEGSMYDVPGGRP-----------------------------------MRNATCTSI 431 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821 APT T++ I GVS I+PS+ ++V++ + G+ + + E+ +R+ + E ++ Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSRELFEKLV 491 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880 S HD +E IPD LK++ TA I P W I + QK+ D A S + + E Sbjct: 492 SSNHLHD-----MECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHEA 546 Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924 + + + ++ A+ GLK T Y SR+A + +S +K VD L+ Sbjct: 547 TREDMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQYLD 594 >gi|194448974|ref|YP_002046331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|207857696|ref|YP_002244347.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194407278|gb|ACF67497.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|206709499|emb|CAR33843.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 761 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W +L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|322617029|gb|EFY13935.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617665|gb|EFY14564.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624705|gb|EFY21534.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630254|gb|EFY27024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634435|gb|EFY31168.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639145|gb|EFY35837.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640142|gb|EFY36808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645770|gb|EFY42294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651545|gb|EFY47920.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656106|gb|EFY52405.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659458|gb|EFY55705.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665920|gb|EFY62103.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669842|gb|EFY65983.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673827|gb|EFY69924.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678585|gb|EFY74641.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683619|gb|EFY79633.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687695|gb|EFY83665.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196208|gb|EFZ81365.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198376|gb|EFZ83478.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204186|gb|EFZ89197.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208572|gb|EFZ93511.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212338|gb|EFZ97161.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218255|gb|EGA02965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222987|gb|EGA07336.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227422|gb|EGA11587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232250|gb|EGA16353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235717|gb|EGA19801.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241123|gb|EGA25159.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244865|gb|EGA28867.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248576|gb|EGA32507.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251596|gb|EGA35464.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255475|gb|EGA39238.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263077|gb|EGA46623.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268137|gb|EGA51614.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270770|gb|EGA54208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 761 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W +L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|329298016|ref|ZP_08255352.1| ribonucleotide-diphosphate reductase subunit alpha [Plautia stali symbiont] Length = 761 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 188/673 (27%), Positives = 306/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ + ++ P+ LY + + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYSQ-FEPPK---------LYDQ-IVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDRHLLEDYSTEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG ++ D CN SP + V SNLC EI L N S E A+C L + Sbjct: 408 STGRIYVQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D ++LA+ AVR LD ++D + I AK+ R +G+G++ + Sbjct: 468 NLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + ++ E I + + AS ELA+E+GA FK + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANNLTHKTFEAIQYWLLKASNELAKEQGACPWFKETTYSQGILPIDT 582 Query: 726 IGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +D + N L W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 583 YK-----KDLDSVCNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 ++ +K++ G Sbjct: 638 PRGHISIKASKDG 650 >gi|312871261|ref|ZP_07731359.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 3008A-a] gi|312874780|ref|ZP_07734799.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2053A-b] gi|311089525|gb|EFQ47950.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2053A-b] gi|311093275|gb|EFQ51621.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 3008A-a] Length = 725 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y++ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N ++ K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|116747708|ref|YP_844395.1| ribonucleotide-diphosphate reductase subunit alpha [Syntrophobacter fumaroxidans MPOB] gi|116696772|gb|ABK15960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Syntrophobacter fumaroxidans MPOB] Length = 728 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 182/619 (29%), Positives = 282/619 (45%), Gaps = 79/619 (12%) Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350 L +L RY + G IE P+ F RVA +A + + E+ A FY L++S Sbjct: 17 LVVLRKRYLEKDDEGKPIETPEELFWRVARTIAQADVAFQGPEKAEETADRFYALMTSLD 76 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 77 FIPNSPTLMNAGRPLGQLSACFVLPVEDSIDSIFEAIKHAAMIHKSGGGTGFSFSRIRPE 136 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G + G + F+ V + + QGG R+GA L H D+E+F+ + Sbjct: 137 NDKVLSTQGVASGPVSFMSVFDTATETIKQGGTRRGANMGILRVDHPDIEKFITCKT--- 193 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D R + N + + D FMK V ++A + L SP + L + Sbjct: 194 -DNDRMTNFNISIAVTDSFMKAVEEDAEYELISPRTRERVQSLSAR-------------- 238 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 KVF +I+ A WR G P I F D N +P HVG + S+N C E L Sbjct: 239 ----KVFDEITQSA-WRN--------GEPGIIFLDVMNRHNPTPHVGEIESTNPCGEQPL 285 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + + DY+ L + AV LDNVI++N + ++ + Sbjct: 286 LPYES----CNLGSINLASMHRDGNIDYEHLKEVVWDAVHFLDNVIEVNNYPLQIIEDMT 341 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLG+MGF L L +PY S AVE A++ M FI + +AS +ERG + + Sbjct: 342 RGNRKIGLGVMGFSDLLISLGVPYNSEAAVETAEKVMSFIQQESKAASAHYGKERGNFVN 401 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 + GS+++ R +T MRN+ IAPT Sbjct: 402 YAGSIYE----------------------------------RPETPHMRNATTTTIAPTG 427 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 TI+ I G S I+P + +V+ + G + V+ ++R + + ++ + G Sbjct: 428 TISIIAGCSSGIEPLFAISFVRKVLDGQELVEVHPLFQKVARERGFYSDDLMKKIA-EKG 486 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888 SI N IP D++ + T+ ++ P W I + QK D A S + + + + Sbjct: 487 SIKNFLEIPADVRNVFVTSHDVTPDWHIRIQAAFQKHTDNAVSKTINFPFSATPEDVSSA 546 Query: 889 YRQAWLMGLKTTYYLRSRS 907 Y QA+ +G K R S Sbjct: 547 YLQAYKLGCKGLTIYRDGS 565 >gi|309804853|ref|ZP_07698915.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 09V1-c] gi|308165792|gb|EFO68013.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 09V1-c] Length = 725 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKTMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N ++ K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|262043284|ref|ZP_06016415.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039383|gb|EEW40523.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 761 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 219/794 (27%), Positives = 339/794 (42%), Gaps = 91/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E+G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + L + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFS +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 351 GDITLFSLSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L V D L + W+ L++ +KT G+RNS A+ P+ T + I + I Sbjct: 582 TYKKDLDGIVSDPLHYD------WEALRESIKTHGLRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P ++ +K++ G VV + + LW ++ +DG Sbjct: 636 EPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG------------ 677 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWL 894 ++ QK+IDQ+ S N D PSGK +L A+ Sbjct: 678 --------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYK 723 Query: 895 MGLKTTYYLRSRSA 908 G+KT YY +R Sbjct: 724 FGVKTLYYHNTRDG 737 >gi|167549729|ref|ZP_02343488.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325233|gb|EDZ13072.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 761 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VGKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|145298926|ref|YP_001141767.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas salmonicida subsp. salmonicida A449] gi|142851698|gb|ABO90019.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Aeromonas salmonicida subsp. salmonicida A449] Length = 755 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 187/658 (28%), Positives = 298/658 (45%), Gaps = 49/658 (7%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219 ++ +++ A GL +VS V +++ YDG+ +D+ +I ++ LI E+ P+Y + Sbjct: 19 KIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIKATADLISEQSPDYQYM 78 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ ++ P LY ++ R ++ G + L + Sbjct: 79 AARLAIFHLRKKAYGQ-FEPPH---------LY-QHVARLVDMGKYDKHLLTDYTQAEFE 127 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 L L + RD F Y ++ L +Y + + G E PQ ++ VA L K + + Sbjct: 128 ELNEHLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFLYILVAACLFSKYPKDTR 187 Query: 338 RAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAML 393 + FY+ +S+F TP + SG R P Q SSC L D L I Sbjct: 188 LSYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECDDSLDSINATASAIVRY 245 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G+G + +RGLG+ I G G IPF K +QGG R GA + Sbjct: 246 VSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATLFYP 305 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH +VE L L+ N G + R M+ I L +R+ + TLFSP + L+D Sbjct: 306 LWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDAPGLYDA 365 Query: 514 Y---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCN 568 + +FE Y YE+ RK I AV L+ M+ TG +I D CN Sbjct: 366 FFADQDKFEALYVKYEQDP------AIRKKTIKAVDLFSLMMQERAGTGRIYIQNVDHCN 419 Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619 SP V V SNLC EI L + E A+C L + NL A D + Sbjct: 420 THSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNLGA--IEKLEDLE 477 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++A AVR LD ++D + ++ A+K + R +G+G++ + L Y+ Sbjct: 478 EMAD---LAVRALDALLDYQDYPLKAAQKGSMNRRTLGIGVINYAYYLAKNGARYSDGSG 534 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + + E I F+ + ASV+LA+E G +F + + QG+ PID+ + D L N Sbjct: 535 LALTHRTFEAIQFYLLKASVQLAREFGPCPAFNETTYAQGILPIDT---YKKDLDNLC-N 590 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 L W+ L++ +KT+G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 591 EPLHLDWETLREEIKTVGLRNSTLTALMPSETSSQISNSTNGIEPPRGLVSVKASKDG 648 >gi|198243793|ref|YP_002216346.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938309|gb|ACH75642.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 780 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 212/814 (26%), Positives = 352/814 (43%), Gaps = 87/814 (10%) Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ++R D+ +++ + + + L + DG N ++ +++ A GL +VS V Sbjct: 2 DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ YDG+ SD+ +I ++ LI ++ +Y + AR + LR++ +P Sbjct: 62 LRSHIQFYDGIKTSDIHETIIKAAADLISRDASDYQYLAARLAIFHLRKKAFGQF--EPP 119 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 HH + +E G L E + + + + + ++RD F Y ++ L Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170 Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356 +Y + + G E Q ++ VA L +E R FY+ +S+F TP Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229 Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 + SG R P Q SSC L D L I G+G + +R LG+ I Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G G IPF K + +QGG R GA + WH++VE L L+ N G + Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531 R M+ I L R+ + TLFSP +V L+D + EFE Y YE Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590 + +++ AV L+ M+ TG +I D CN SP V V SNLC EI L Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463 Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 N + E A+C L + NL A D+L AVR LD ++D + Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I AK+ R +G+G++ F L Y+ A + ++ E I ++ + AS ELA Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761 +E+GA F + + +G+ PID+ +D + +N W++L++ +KT G+RNS Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNS 633 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 A+ P+ T + I + I+P + +K++ G ++ + + +D ++ ++ Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879 ++ +DG ++ QK+IDQ+ S N D Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722 Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908 PSGK +L A+ G+KT YY +R Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756 >gi|123441722|ref|YP_001005706.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088683|emb|CAL11485.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 761 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 208/792 (26%), Positives = 343/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS ELA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNELAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + ++ ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|168229640|ref|ZP_02654698.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469857|ref|ZP_03075841.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249651|ref|YP_002147233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194456221|gb|EDX45060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197213354|gb|ACH50751.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205335883|gb|EDZ22647.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 761 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W +L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|157953136|ref|YP_001498028.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus NY2A] gi|155123363|gb|ABT15231.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus NY2A] Length = 1103 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 149/432 (34%), Positives = 219/432 (50%), Gaps = 58/432 (13%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228 A +GL SKIV S ++ DG+S L+ S ++ + P+Y + AR + L Sbjct: 49 AMTGLSVDVSKIVAS-VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNL 107 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 QK TH ++ Y E + H L+ND K Sbjct: 108 ------------QKQTHDKITDAYAE-------------IAH---------LLSNDFKEN 133 Query: 289 -RDFAFEY--------------LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 A EY G + + Y +N +E PQ ++RVA+GL + Sbjct: 134 IEKHADEYQSFIDYDRDYDFDYFGFKTMERLYLTKVNNKIVERPQHVYLRVAIGLWGSDI 193 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + K E Y+ LS F ++PTLFN+G + QL+SCFL TV D L I+ L + A L Sbjct: 194 ARVK---ETYDALSCRKFTHASPTLFNAGFKKAQLASCFLVTVEDSLGDIYKVLGDCAQL 250 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GGLG + + +RG G+ I+GTNG+S G++P LKV + T+ NQGG+RKG+ YLE Sbjct: 251 SKHGGGLGINISEIRGRGSRINGTNGESDGIVPMLKVFDTTSAYANQGGRRKGSFAIYLE 310 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DV +FL +++N G++ R ++ A W+ DLFMKRV +A W+LF P E L D Sbjct: 311 PHHSDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFDPSECPGLTDA 370 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G E+ YE YE E K + A +W M+T + ETG P+++ KD N ++ Q Sbjct: 371 FGDEYAELYERYE-----AEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVNKKNMQ 425 Query: 574 QHVGVVHSSNLC 585 + G + SNLC Sbjct: 426 MNAGTIRGSNLC 437 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 201/348 (57%), Gaps = 14/348 (4%) Query: 572 PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 P++H+GV + + C EI +S EETAVC +GS+ L + N++FD+D L ++ Sbjct: 758 PKRHMGVFNGVITGQCNEIVEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLRKNVKILA 817 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + LD ID+ + I++A+ SN R IG+G+ G Q L Y SPEA ++ E E Sbjct: 818 KNLDRSIDVMAYPIKEAETSNKLRRPIGVGVQGLQDVFFKLRFSYDSPEARDLNREIFEH 877 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I + A+ ASVELA+ G Y +F+GS +G+ L +V + S L W L Sbjct: 878 IYYAAVEASVELAEIHGPYPTFEGSPASKGILQYH----LWDVTPK------SNLDWRGL 927 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++RVK G+RNS A+ PTA+ A ICG ++ +P NLY + ++G+F V+NS+LV E Sbjct: 928 EERVKK-GIRNSLVTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVINSYLVRE 986 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L +R W+E M + + + GSI + I +K ++ TA+++ +I+ AS R ++DQ Sbjct: 987 LIERGTWNEQMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMASDRGAFVDQ 1046 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 QS+NL+L +P+ K + + W GLKT YYLRS+ A+S T+ Sbjct: 1047 TQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPASSAIAVTI 1094 >gi|323700021|ref|ZP_08111933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. ND132] gi|323459953|gb|EGB15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio desulfuricans ND132] Length = 749 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 179/629 (28%), Positives = 300/629 (47%), Gaps = 89/629 (14%) Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-------EFYNLLSSFH 350 LQ Y R G E + F RVA +A +E + E+ V +FY+L++S+ Sbjct: 23 LQRRYQRK--DTEGVVYETVKELFWRVASAIAAEEAKYERSTVKPAKLARDFYDLMTSYR 80 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+GT QL++CF+ V DD+ GIF A++ AM+ K GG G ++ +R Sbjct: 81 FLPNSPTLMNAGTDLGQLAACFVLPVADDIEGIFDAVKHAAMIHKSGGGTGFAFSRLRAK 140 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + + T G + G + FLK+ N + QGG R+GA L H D+ EF+ ++ G Sbjct: 141 DSVVGSTGGVASGPLSFLKIFNCATEQIKQGGTRRGANMGILRIDHPDIMEFIKAKERDG 200 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + ++ N + + + FM+ V + A + L +P+ + L ++ Sbjct: 201 E----LNNFNLSVGLTEAFMQAVNEKADYNLIAPNTGEAVGTLNARD------------- 243 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 ++ ++ +E+G P I F D N +P +G + S+N C E L Sbjct: 244 --------------VFNILVQKAWESGDPGIVFLDRINRDNPTPALGEIESTNPCGEQPL 289 Query: 591 NSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 CNLGSINL FA +++ D+D+L I +VR LDNVID + + ++ Sbjct: 290 LPYE----ACNLGSINLGLCFAKGRNGKDSEIDWDELKRIIHLSVRFLDNVIDASVYPLD 345 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + + +R IGLG+MG+ L+ L IPY S AV++A+ M+F+ + SAS +LA E Sbjct: 346 QITEMVGKNRKIGLGVMGWADLLYQLQIPYNSQTAVDMAERVMKFVQAESRSASKQLATE 405 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RG + ++ E + + P+ RN+ Sbjct: 406 RGQFPAYP----------------------ESTFGKANLGPY------------RNATTT 431 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823 IAPT T++ I G S ++P + +V++ M D V N + L D + ++ + Sbjct: 432 TIAPTGTLSIIAGCSSGVEPLFALSFVRNVMDNDKLVETNPYFEAALNSADAYSGKLMEE 491 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 + GSI ++ +P+ L+ ++ T+ +I+P+W ++ + QK+ D A S + L S Sbjct: 492 IA-KVGSIKKMDHLPEHLRHVYVTSMDIEPIWHLKMQAAFQKYTDNAVSKTVNLPN-SAT 549 Query: 884 KLDF--IYRQAWLMGLKTTYYLRSRSATS 910 K D IY +A+ G K R S TS Sbjct: 550 KEDIWDIYWKAYEYGCKGVTVYRDGSKTS 578 >gi|307626228|gb|ADN70532.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UM146] Length = 761 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 213/794 (26%), Positives = 344/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNPTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|118576941|ref|YP_876684.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A] gi|118195462|gb|ABK78380.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A] Length = 881 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 168/588 (28%), Positives = 292/588 (49%), Gaps = 50/588 (8%) Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 +A + +R E+Y L++S F+ ++PT+ N+G R QLS+CF+ +PDD+ GI + Sbjct: 239 IAKRHNNYAERISEYYELMASQDFLPNSPTMMNAGGRLGQLSACFVLNMPDDMGGIMKST 298 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + AM+ K GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA Sbjct: 299 SDAAMIFKSGGGVGINYSDLRQEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGA 358 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 +E WH DVE+F+ + G + N + + + F + L P E Sbjct: 359 NMGIIEAWHPDVEKFITNKTEAG----ILENFNVSVGVWEDFWQ--------ALAGPGE- 405 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 GK Y ++ G K R+ISA L + +++ P + F D Sbjct: 406 -------GK--------YMLRSTAG--KPVREISAHQLIDLIAHSAWKSAEPGLIFFDNI 448 Query: 568 NIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQFDYD--K 620 N + + G + ++N C E +L CNLGSINL + A+ +F++D + Sbjct: 449 NKYNVLAKAMGGALRATNPCGEQSLYPYES----CNLGSINLARLVKRKADGEFEFDWQR 504 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 IR R LDNVID+N + +++ +++ R IGLG+MG L+ L IPY S E Sbjct: 505 YEEMIRKTTRFLDNVIDVNLYPVKEIDRASKESRRIGLGVMGVADLLYKLRIPYNSKEGY 564 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E ++++++ SV LA+ RG + + + +G P+ LA RDE + Sbjct: 565 DLQSKLAEALTYYSMEESVALAKSRGEFPLCPQTEYPEGKIPVAGYYELA--RDEHTYD- 621 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 WD L ++K G+RN+ +APT T++ + S ++PS+ ++ K G F Sbjct: 622 -----WDALIDKIKRHGIRNALTTTVAPTGTLSMLADCSNGMEPSFALVFEKRVTVGKFF 676 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 N + LK+ L+++ +++ + + GS+ +E IP+ ++KI TA +I + Sbjct: 677 YTNKIIAQILKEHGLYNDDLLARISENYGSLRGLEEIPEWMQKIFVTAMDIHWSDHLMVQ 736 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 S Q+WI A + + + ++ + + Y A +GLK T R S Sbjct: 737 SVWQEWIGNAIAKTINMPNDVTADDVKASYLLAHELGLKGTTVYRDGS 784 Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 8/98 (8%) Query: 33 KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92 KRNG + +F+ KI+ AI KA A+ S D+ L V +L+Q S I Sbjct: 15 KRNGTLDNFNMDKITNAISKAL-------AATSEADHDLASELAHGVVKKLVQQGFSISI 67 Query: 93 V-HIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 +EDIQD VE +L++SGH +I + Y+LYR ER +R Sbjct: 68 PPSVEDIQDMVESTLIESGHSEIAKAYILYRHERRKIR 105 >gi|330829607|ref|YP_004392559.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas veronii B565] gi|328804743|gb|AEB49942.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas veronii B565] Length = 755 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 189/660 (28%), Positives = 299/660 (45%), Gaps = 53/660 (8%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219 ++ +++ A GL +VS V +++ YDG+ +D+ +I ++ LI E+ P+Y + Sbjct: 19 KIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETIIKATADLISEQTPDYQYM 78 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ ++ P LY ++ R ++ G + L E + Sbjct: 79 AARLAIFHLRKKAYGQ-FEPPH---------LY-QHVARLVDMGKYDKHLLEDYTQAEFE 127 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 L L + RD F Y ++ L +Y + + G E PQ ++ VA L + K+ Sbjct: 128 ELNTHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLYILVAACL-FSKYPKDT 186 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R FY+ +S+F TP + SG R P Q SSC L D L I Sbjct: 187 RLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECDDSLDSINATASSIVR 244 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +RGLG+ I G G IPF K +QGG R GA + Sbjct: 245 YVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATLFY 304 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH +VE L L+ N G + R M+ I L +R+ + TLFSP + L+D Sbjct: 305 PLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDAPGLYD 364 Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPC 567 + +FE Y YE+ RK + AV L+ M+ TG +I D C Sbjct: 365 AFFADQDKFEELYVKYEQDP------AIRKKTLKAVDLFSLMMQERAGTGRIYIQNVDHC 418 Query: 568 NIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDY 618 N SP V V SNLC EI L + S E A+C L + NL A D Sbjct: 419 NTHSPFDPSVAPVRQSNLCLEIALPTKPLNNIDDESGEIALCTLSAFNLGA--IEKLEDL 476 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +++A AVR LD ++D + I AKK + R +G+G++ + L Y+ Sbjct: 477 EEMAD---LAVRALDALLDYQDYPIAAAKKGSMGRRTLGIGVINYAYYLAKNGARYSDGS 533 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 + + + E I ++ + ASV+LA+E G F + + QG+ PID+ +D A+ Sbjct: 534 GLALTHRTFEAIQYYLLKASVQLAREFGPCPLFGETTYAQGILPIDTYK-----KDLDAL 588 Query: 739 -NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 N L W+ L++ +K++G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 589 CNEPLHLDWESLREEIKSVGLRNSTLTALMPSETSSQISNATNGIEPPRGLVSVKASKDG 648 >gi|315654124|ref|ZP_07907040.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus iners ATCC 55195] gi|315488820|gb|EFU78466.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus iners ATCC 55195] Length = 725 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 316/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y++ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTANIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N + K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDNT-----NYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|204929225|ref|ZP_03220368.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321769|gb|EDZ06968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 761 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 210/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS EL++E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELSKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|50120138|ref|YP_049305.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49610664|emb|CAG74109.1| ribonucleoside-diphosphate reductase 1 alpha chain [Pectobacterium atrosepticum SCRI1043] Length = 761 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 213/790 (26%), Positives = 345/790 (43%), Gaps = 87/790 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 5 LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ ++ P TH +E G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTNMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSAEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRMDYVKRFYDAISMFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ A + ++I A L+ M+ Sbjct: 351 EEITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKASELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A N+ D + LA+ AVR LD ++D + I+ A++ R +G+G++ F Sbjct: 467 FNLGA--INSLDDLEDLAT---LAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS LA+E+GA + F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACTWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + RD A+ N L W+ L+K +K G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----RDLDAICNEPLHLDWETLRKDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ VK++ G ++ + +D ++ ++ ++ +DG Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L A+ G Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFG 725 Query: 897 LKTTYYLRSR 906 +KT YY +R Sbjct: 726 VKTLYYQNTR 735 >gi|156975011|ref|YP_001445918.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio harveyi ATCC BAA-1116] gi|156526605|gb|ABU71691.1| hypothetical protein VIBHAR_02733 [Vibrio harveyi ATCC BAA-1116] Length = 760 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 218/798 (27%), Positives = 348/798 (43%), Gaps = 97/798 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y + + T H+ + R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L + ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDKHILEDYTKAELDELDAYMDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V+ L KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + L L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + +EFE Y YE IK + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ F Sbjct: 466 AFNLGA--IKSLDDFEELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580 Query: 724 DS----IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D+ + L+ E +EL + WD L++ + G+RNS A+ P+ T + I + Sbjct: 581 DTYKKDVDLICE--EELHYD------WDSLRQEIMEHGLRNSTLTALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + VK++ G VV F ELK + ++ ++ +DG Sbjct: 633 NGIEPPRGFVSVKASKDGILKQVVPDFA--ELKD----NYELLWNIGSNDGY-------- 678 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYR 890 +H QK++DQA S N D PSG KKL Sbjct: 679 -----LHLVGI-------------MQKFVDQAISANTNYD-PSGYESGKVPMKKLLQDLL 719 Query: 891 QAWLMGLKTTYYLRSRSA 908 A+ G+KT YY +R Sbjct: 720 TAYKFGVKTLYYHNTRDG 737 >gi|289677032|ref|ZP_06497922.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. syringae FF5] Length = 205 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 119/205 (58%), Positives = 146/205 (71%), Gaps = 17/205 (8%) Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DL Sbjct: 3 ATAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 62 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 KY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKK Sbjct: 63 KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 122 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--- 941 LD YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 123 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 180 Query: 942 -----------SSCTSD-TECEVCQ 954 +C D +CE CQ Sbjct: 181 EAAPAGPAPVPKACAIDEPDCEACQ 205 >gi|157961885|ref|YP_001501919.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella pealeana ATCC 700345] gi|157846885|gb|ABV87384.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella pealeana ATCC 700345] Length = 762 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 214/781 (27%), Positives = 349/781 (44%), Gaps = 93/781 (11%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++E A GL +VS V ++ +DG++ + +I ++ LI E P+Y + Sbjct: 21 KIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIKAAADLISPESPDYQFL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 +AR + LR++ +P K H + IE G + + E ++ Sbjct: 81 SARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLIELGKYDQHILEDYSQEEID 129 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 L + + + RD F Y ++ L +Y + + E Q ++ VA L K KE Sbjct: 130 TLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFAK-YPKET 188 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R +FY+ S+F TP + +G R P Q SSC L D L I Sbjct: 189 RLQYVKDFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSSIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 247 YVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G D R ++ I + +R+ Q +LFSP +V ++D Sbjct: 307 PMWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKVMYQRLIQGGMISLFSPSDVPGMYD 366 Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + +EFE Y YE AD K ++I AV L+ M+ TG +I D CN Sbjct: 367 AFFEDQEEFERLYLKYE--ADDSIRK--KQIKAVELFSLMMQERASTGRIYIQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V V SNLC EI L N E A+C L ++NL A ++ Sbjct: 423 HSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNLGA-----IKKLEE 477 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L AVR LDN++D + I A+K++ R +G+G++ F + L + Y+ A Sbjct: 478 LEPLADLAVRALDNLLDYQDYPIISAQKASMNRRTLGIGVINFANYLAKEGVRYSDGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMN 739 I ++ E I F+ + AS++LA+E+GA +F + + +G+ PID+ L ++ DE Sbjct: 538 GITHKTFEAIQFYLLKASMKLAKEQGACPAFHETTYSKGILPIDTYKRDLDKICDE---- 593 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 L W+ L++ +KT G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 594 -PLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG-- 650 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +LKQ ++ D + + S + ++P++ + Sbjct: 651 ---------QLKQ-------VVPDFEKYQYSYELLWQMPNNDGYLQLVGL---------- 684 Query: 860 ASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909 QK++DQ+ S N D PS G ++ D + A+ G+KT YY +R Sbjct: 685 ---MQKFVDQSISANTNYD-PSRFEGGRVPMKVLLKDLL--TAYKYGVKTLYYHNTRDGA 738 Query: 910 S 910 S Sbjct: 739 S 739 >gi|293395207|ref|ZP_06639493.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] gi|291422384|gb|EFE95627.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] Length = 762 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 185/675 (27%), Positives = 307/675 (45%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H R +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLHAH----------VVRMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYSTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRQ----KRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ D ++LA+ AVR LD ++D + I+ A + R +G+G++ F Sbjct: 467 FNLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS LAQE+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYAQGILPID 581 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + L ++ L + W+ L+K ++ G+RNS A+ P+ T + I + I Sbjct: 582 TYKKDLDGICQEPLHYD------WETLRKEIQETGLRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSG 797 +P ++ +K++ G Sbjct: 636 EPPRGHISIKASKDG 650 >gi|238788615|ref|ZP_04632407.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] gi|238723210|gb|EEQ14858.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] Length = 761 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 207/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRLDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|300362787|ref|ZP_07058961.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus gasseri JV-V03] gi|300353077|gb|EFJ68951.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus gasseri JV-V03] Length = 626 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 184/641 (28%), Positives = 301/641 (46%), Gaps = 73/641 (11%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 +G Y Y L N ++ + + F R M E+ A+ + S F +T Sbjct: 1 MGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLVKDIISNRFQPAT 59 Query: 356 PTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PT N+G R + SC+L V D++ I A+ + L+K GG+ T +R LGA I Sbjct: 60 PTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPI 119 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 S G+IP +K+ D+ NQ G+R+GA YL H + +FLD ++ D++ Sbjct: 120 KKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKV 179 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADR 531 R ++ IPD+ + +N LFSP D+ YGK + I E Y+ + Sbjct: 180 RIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKE-YQNLLNN 235 Query: 532 GEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-- 588 I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G + SNLC+EI Sbjct: 236 PCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQ 293 Query: 589 --TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-- 636 T ++ +E+ + CNLGS+N+ A + DKL + +V+ L+ V Sbjct: 294 VNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARS 349 Query: 637 -DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D++C +IEK K+N RAIGLG M L HI Y SPEAVE I++HA Sbjct: 350 SDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHA 406 Query: 695 ISASVELAQERGAYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSRLP----W 746 S +LA++ GA+ FK S + G F + + + E+ LP W Sbjct: 407 FKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVLPTKEDW 466 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +EL ++K G+ N+N +A+APT +I+ + + S+ P + + V ++ Sbjct: 467 EELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYK 526 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +N+ D+ + A+E+ P +I+ + QK+ Sbjct: 527 INK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQKY 557 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ+ SL L++ D + + L+ Y A+ + YY+R R Sbjct: 558 VDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 598 >gi|309805907|ref|ZP_07699939.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 03V1-b] gi|312873293|ref|ZP_07733348.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2052A-d] gi|308167683|gb|EFO69830.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 03V1-b] gi|311091173|gb|EFQ49562.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2052A-d] Length = 725 Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N ++ K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|309804069|ref|ZP_07698150.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 11V1-d] gi|308163837|gb|EFO66103.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 11V1-d] Length = 725 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N ++ K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|89074074|ref|ZP_01160575.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium sp. SKA34] gi|89050212|gb|EAR55723.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium sp. SKA34] Length = 755 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 213/806 (26%), Positives = 350/806 (43%), Gaps = 89/806 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++E A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTESIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ +P K H +E+ Sbjct: 64 KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDHVKNL---------VEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L E + + + N + + RD F Y ++ L +Y + ++G E Q Sbjct: 113 GKYDSHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ +A L + KE R FY+ +S F S PT SG R P Q SSC L Sbjct: 173 YILIAAAL-FNKYPKETRLDYIKRFYD--ASSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G IPF K Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +LFSP +V ++D + +EFE Y YE+ + IK I A+ L+ ++ Sbjct: 350 GENISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDS---SIKR-ETIKAIDLFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D L VR LD ++D + + A++S R +G+G++ F Sbjct: 466 AFNLGAIES-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + E+ E I ++ + ASV LA+E+GA +F + + QG+ PI Sbjct: 521 AYYLAKHGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ ++ + + R W+ L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 581 DTYK--KDINNICSAEL--RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK++ G ++ + K ++ ++ ++ ++ +DG Sbjct: 637 PPRGFVSVKASKDG---ILKQVVPEYAKYKENYE--LLWNIGSNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAWL 894 ++ QK+IDQA S N D + +G K+ D + A+ Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLL--NAYK 723 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920 +G+KT YY +R S + + D Sbjct: 724 LGVKTLYYHNTRDGASDSQGDMAADD 749 >gi|94993747|ref|YP_601845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10750] gi|94547255|gb|ABF37301.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10750] Length = 726 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 211/780 (27%), Positives = 349/780 (44%), Gaps = 131/780 (16%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291 T +KKP + H + E RY+EE V + + ++ L YL N+ YE+ Sbjct: 15 TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71 Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341 AF Y Q FL++ G+ ++ Q++ ++ G ET E RAV Sbjct: 72 YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKHYLET-FEDRAVMNA 126 Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387 ++++ + F +TPT N+G R + SC+L V D++ I A+ Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H +V FLD ++ D++ R + IPD+ + +N LFSP Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303 Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK+ +I+ E Y++ IK ISA ++ + + FE+G+P++ F D Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613 N R+P G + SNLC+EI S+ E CNLGSIN+ A Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421 Query: 614 NQFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D I T++R LD V D+NC ++E +NH A+GLG M L Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRLSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 HI Y + EAV+ D ++++A AS +LA+E+GA++ F S + G + Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528 Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 A+ E A +T++ LP W L +K G+ N++ +A+APT +I+ Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ S V ++ +++ ++ Y++ Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I+ + QK +DQA SL L++ D+ + + L+ Y QA+ Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + L G + VT P +S + TEC C Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECHSC 724 >gi|317484384|ref|ZP_07943302.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6] gi|316924359|gb|EFV45527.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6] Length = 751 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 174/632 (27%), Positives = 300/632 (47%), Gaps = 90/632 (14%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFH 350 ++L RY+ NG +E F RVA +A +E + E+ A FY++++ + Sbjct: 19 KVLSKRYYRKDENGQCVEDATGLFWRVASSVAAEEAKYEQSPWKPDALARAFYDMMTDWR 78 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G+ QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 79 FLPNSPTLMNAGSELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPK 138 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + + T G + G + FL++ N + QGG R+GA L H D+ EF+ ++ G Sbjct: 139 NSRVGTTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDILEFIRAKEQEG 198 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + ++ N + I + FM+ V Q+ + L +P GKE Sbjct: 199 E----FNNFNLSVGITEAFMQAVEQDRDYALVNPAS--------GKE------------- 233 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +G +++A ++ ++ +++G P I F D N +P G + S+N C E L Sbjct: 234 QG------RLNAREVFNLLVDKAWQSGDPGIIFLDRINRDNPTPAQGEIESTNPCGEQPL 287 Query: 591 NSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRVLDNVIDINC 640 CNLGS+NL + F A+ D+ + TI AVR LDNV+D + Sbjct: 288 LPYE----ACNLGSLNLSSFFVPGHLDETNPADRGIDWAGIERTIALAVRFLDNVVDASQ 343 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+ + +R IGLG+MG+ L+ L IPY S +A+ +A+ M+FI +AS++ Sbjct: 344 FPLERIAEQVRRNRKIGLGVMGWADLLYQLRIPYDSADAITLAERIMDFIETRGRAASIQ 403 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA ERG + +++ S V+P I L RN Sbjct: 404 LAAERGPFPAYETS-----VYPTKGIPPL-----------------------------RN 429 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEA 819 + IAPT T++ + G S ++P + + ++ M G+ VN L++ D + + Sbjct: 430 ATITTIAPTGTLSILAGCSSGVEPLFALSFARNVMDGERLMEVNPHFEEALREIDCYSQP 489 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 ++ + GSI +++++P+DL+++ TA +I P W + + Q+ D A S + L Sbjct: 490 LLEGVA-ELGSIQSLDQLPEDLRRVFVTAMDIAPEWHLRMQAAFQRHTDNAVSKTVNLPN 548 Query: 880 PSGKKLDF-IYRQAWLMGLKTTYYLRSRSATS 910 + + F IY A+ G K R S ++ Sbjct: 549 SATRDDIFAIYWMAYEEGCKGVTVYRDGSKST 580 >gi|304373618|ref|YP_003858363.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16] gi|299829574|gb|ADJ55367.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16] Length = 750 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 212/793 (26%), Positives = 350/793 (44%), Gaps = 83/793 (10%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE-TALIFS 205 ++ G +F ++L ++ A +G +++ L + DG++ ++ A+ ++ Sbjct: 7 VVKSSGVSQTFEKEKLFKVLNWASAG-KNIDVNAFLENVVDLLRDGMTTKQIQAVAIKYA 65 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + KEP++ V A + LR+ V P + E+ + +E G Sbjct: 66 ADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVEAGKY 114 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323 + + D+ Y ++ +++DF F Y G+Q L +Y L NG E PQ FM Sbjct: 115 DKEILTKWTKSDIEYFEENINHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQYAFML 174 Query: 324 VAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPD 378 +AM L E V+FYN +S TP + +G R P Q SSC + D Sbjct: 175 IAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIM--AGVRTPTRQFSSCVVIESGD 232 Query: 379 DLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 L G A+ + + KY G+G + +R +G+ I G GVIPF K Sbjct: 233 SL-GSLNAV--TSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA Y WH++VE L L+ N G + R ++ + DL KR+ Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEVENLLVLKNNRGVEENRIRHLDYGVQLNDLMYKRLIN 349 Query: 496 NAGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N TLFSPD +D L+D + + + +E ++ ++I AV L++ ++ Sbjct: 350 NDYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPAVRKKRIKAVDLFQLLVQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSS---SEETAVCNLGSINLLAH 610 +TG +I N Q V + SNLC EI + +S ++ +G L+A Sbjct: 410 QTGRKYIFNSHHVN---QQGSFSVPIRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLMAI 466 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +N D + + R AVR LDN++D + + A K+ R++G+G+ + S L Sbjct: 467 VLDNA-DISEFPALTRIAVRALDNLLDYQNYPVAAALKAKQ-RRSLGVGITNYASWLASN 524 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + E ME F+ + AS+ELAQERGA F + + QG+ PID Sbjct: 525 YCDYSEAYAGNV-HELMEAFQFNLLVASMELAQERGACGLFHETKYAQGLLPID---WYC 580 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + DELA + W+ L+ +K G+RNS A+ P + + + + I+P + Sbjct: 581 KNVDELA-SPVYNCDWEWLRGEIKKHGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPVS 639 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKS+ G F N + N+ Q D +D + + G + ++ + Sbjct: 640 VKSSKEGSF---NQVVPNQNNQIDFYDYLWTMAKRGNKGYLAHVAVM------------- 683 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTTY 901 QK++DQA S N D P GK D +Y A G+KT Y Sbjct: 684 -------------QKFVDQAISANTNYDPANFPDGKVKSEIILEDLLY--ANYFGIKTLY 728 Query: 902 YLRSRSATSVEKS 914 Y +R E++ Sbjct: 729 YHNTRDGAGEEEA 741 >gi|225023975|ref|ZP_03713167.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC 23834] gi|224943000|gb|EEG24209.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC 23834] Length = 759 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 213/801 (26%), Positives = 341/801 (42%), Gaps = 87/801 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + ++ +V A GL +VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEPIDLDKIHRVVTWAAQGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + Y+ P H + EG Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYGQYEPPHLFDH----------VSKLTAEG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321 R + E + + + + RD F Y ++ L +Y + +R E PQ + Sbjct: 116 KYDRHILEDYSREEFDEIDGYIDHARDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VAM L K + + FY+ +S F TP + SG R P Q SSC L Sbjct: 176 ILVAMCLFAKYPKATRLDYVKRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIECD 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 234 DSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WHI+VE L L+ N G + R ++ I L R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHIEVESLLVLKNNRGVEDNRVRQLDYGVQINRLLYTRLIKGG 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP+EV L+D + EFE Y YE+ + R + A L+ ++ Sbjct: 354 NITLFSPNEVPGLYDAFFADQDEFERLYVQYEQDPAIRK----RVVPATELFSTLMQERA 409 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D N SP V V SNLC EI L N + E A+C L + Sbjct: 410 GTGRIYIHNVDHSNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAF 469 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D+L + AVR LD ++D + I A+K+ R +G+G++ + Sbjct: 470 NLGA-----LENLDELENLSDLAVRALDALLDYQDYPIPAARKATMNRRTLGIGVINYAY 524 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y++ A+ + + E + ++ + ASV+LA+E GA F +++ +GV PID+ Sbjct: 525 YLAKHGVRYSNDSALALTHRTFEAMQYYLLKASVQLAKEYGACPLFGQTMYAKGVLPIDT 584 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + D + + W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 585 ---YKKDLDSIC-SEPLHYDWEALRAEIVQHGLRNSTLTALMPSETSSQIANATNGIEPP 640 Query: 786 YQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + VK++ G VV F + + LW G+ G ++ + Sbjct: 641 RGLVSVKASKDGILKQVVPEFDRLKNQYETLWQMG---------GNDGYLKLV------- 684 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMG 896 QK++DQA S N D P + L + A+ G Sbjct: 685 ----------------GIMQKFVDQAISANTSYDPKRFDGGRVPMKQMLKDLL-TAYKFG 727 Query: 897 LKTTYYLRSRSATSVEKSTLK 917 LKT YY +R +S ++ Sbjct: 728 LKTLYYHHTRDGADDTQSDIQ 748 >gi|259500783|ref|ZP_05743685.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] gi|302190766|ref|ZP_07267020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus iners AB-1] gi|259167477|gb|EEW51972.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] Length = 725 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N ++ K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|85059562|ref|YP_455264.1| ribonucleotide-diphosphate reductase subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|84780082|dbj|BAE74859.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Sodalis glossinidius str. 'morsitans'] Length = 760 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 212/794 (26%), Positives = 336/794 (42%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + N ++ +++ A GL++VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRKETINLDKIHRVIDWAAEGLENVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ +P K H + + + +++ Sbjct: 65 AAADLISREAPDYQYLAARLAVFHLRKKAYGQF--EPPKLYDHVSRLVTMGKYDKHLLTD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 A E M F + + RD F Y ++ L +Y + G E Q + Sbjct: 123 YSAEEF-EQMDSF--------IDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 M VA L T + FYN +S+F TP + SG R P Q SSC L Sbjct: 174 MLVAACLFSGYPRTTRLDYVKRFYNAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNKLMYQRLVKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TL SP +V L+D + EFE Y YE+ + + R+I AVAL+ M+ Sbjct: 352 YITLLSPSDVPGLYDAFFADQDEFERLYTLYEQDSSIRQ----RRIKAVALFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG ++ D CN SP V + SNLC EI L N S E A+C L + Sbjct: 408 STGRIYVQNVDHCNTHSPFDAAVAPIRQSNLCLEIALPTKPLEDVNDDSGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 468 NLGAIDS-----LDDLGELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGVGVINFAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + + E I ++ + AS +LA+ERGA F + + QG+ P+D+ Sbjct: 523 YLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNDLARERGACPWFNETTYAQGILPVDT 582 Query: 726 I-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 G+++E W+ L+ +K G+RNS A+ P+ T + I + Sbjct: 583 YKKDLDGIVSE---------PLHYDWEALRADIKQHGLRNSTLSALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 ++P + +K++ G VV + + LW+ +P Sbjct: 634 GLEPPRGLVSIKASKDGILRQVVPESIPLQKAYELLWE-------------------MPS 674 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQA 892 + +H QK++DQA S N D P+G K+L A Sbjct: 675 NDGYLHLVGV-------------MQKFVDQAISANTNYDPSRFPAGKVPMKQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|85723395|gb|ABC78338.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus aciditrophicus SB] Length = 771 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 173/598 (28%), Positives = 279/598 (46%), Gaps = 85/598 (14%) Query: 284 DLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQAFFMRVAMGLALK------ETEKE 336 D+ D A + LG + L DR +G+ +E P F RVA +A + + Sbjct: 37 DISSLTDNAIKVLGRRYLKRDR-----DGNALETPSQMFKRVADTIAAADRIFNDQADTA 91 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 + +FY ++++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K Sbjct: 92 GLSDQFYRMMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKFTALIHKS 151 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG G ++ +R + T G S G I F++V + + QGG R+GA L H Sbjct: 152 GGGTGFSFSRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGANMGILRVDH 211 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ F+ + D+ + ++ N + + ++FM V + + L +P + + L + Sbjct: 212 PDIMNFIMCKA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRDGQVIGTLNAR 267 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 KVF +I A A W E G P I F D N +P H+ Sbjct: 268 ------------------KVFDRIVAQA-W--------ENGEPGIVFLDRLNRDNPTPHI 300 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 GV+ S+N C E L CNLGSINL N + ++ +L + AV LDNV+ Sbjct: 301 GVIESTNPCGEQPLLPYES----CNLGSINLGKMVINGEVNWKRLRDVVNLAVHFLDNVV 356 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 +IN + + + +R IGLG+MG+ L L IPY S A+E+A+E M+FI+ Sbjct: 357 EINQYPLPIIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVMKFINTEGHD 416 Query: 697 ASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS LA++RG + +FK SL+D QG PI Sbjct: 417 ASHALAKKRGPFPNFKESLYDKQGKAPI-------------------------------- 444 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRD 814 RN+ IAPT TI+ I S ++P + Y++ M D + +N F K+R Sbjct: 445 ---RNATVTTIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPFFEAMAKERG 501 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + + ++ + G+I +++ +P D++ + TA +I P I + QK+ D A S Sbjct: 502 FYSKELMRKIAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQKYTDNAVS 558 >gi|161347547|ref|YP_462506.2| ribonucleotide-diphosphate reductase subunit alpha [Syntrophus aciditrophicus SB] Length = 743 Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 173/598 (28%), Positives = 279/598 (46%), Gaps = 85/598 (14%) Query: 284 DLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQAFFMRVAMGLALK------ETEKE 336 D+ D A + LG + L DR +G+ +E P F RVA +A + + Sbjct: 9 DISSLTDNAIKVLGRRYLKRDR-----DGNALETPSQMFKRVADTIAAADRIFNDQADTA 63 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 + +FY ++++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K Sbjct: 64 GLSDQFYRMMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKFTALIHKS 123 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG G ++ +R + T G S G I F++V + + QGG R+GA L H Sbjct: 124 GGGTGFSFSRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGANMGILRVDH 183 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ F+ + D+ + ++ N + + ++FM V + + L +P + + L + Sbjct: 184 PDIMNFIMCKA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRDGQVIGTLNAR 239 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 KVF +I A A W E G P I F D N +P H+ Sbjct: 240 ------------------KVFDRIVAQA-W--------ENGEPGIVFLDRLNRDNPTPHI 272 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 GV+ S+N C E L CNLGSINL N + ++ +L + AV LDNV+ Sbjct: 273 GVIESTNPCGEQPLLPYES----CNLGSINLGKMVINGEVNWKRLRDVVNLAVHFLDNVV 328 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 +IN + + + +R IGLG+MG+ L L IPY S A+E+A+E M+FI+ Sbjct: 329 EINQYPLPIIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVMKFINTEGHD 388 Query: 697 ASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS LA++RG + +FK SL+D QG PI Sbjct: 389 ASHALAKKRGPFPNFKESLYDKQGKAPI-------------------------------- 416 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRD 814 RN+ IAPT TI+ I S ++P + Y++ M D + +N F K+R Sbjct: 417 ---RNATVTTIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPFFEAMAKERG 473 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + + ++ + G+I +++ +P D++ + TA +I P I + QK+ D A S Sbjct: 474 FYSKELMRKIAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQKYTDNAVS 530 >gi|212224967|ref|YP_002308203.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus onnurineus NA1] gi|212009924|gb|ACJ17306.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus onnurineus NA1] Length = 910 Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 160/601 (26%), Positives = 283/601 (47%), Gaps = 56/601 (9%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 E++ L++S FM +TP L NSG LS+CF+ + DD+ I A + AM+ K GG Sbjct: 243 EYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGGGT 302 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G +++ +R G + T G + G + F+ + + + + QGG R+GA LE WH D+E Sbjct: 303 GLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHPDIE 362 Query: 461 EFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +F+ + KN G + +++ W F + + + + L +P Sbjct: 363 KFIHAKEKNIGTNVLANFNISVGIW--SDFWEALREGKRYPLINP--------------- 405 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-- 577 R ++ ++I +L+ ++ M + P + F D N R+ + Sbjct: 406 -------RTGEK-----VKEIDPKSLFEELAFMAWAKADPGVIFFDVINRRNVLEPAKGE 453 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVL 632 + ++N C E L E CNL SINL ++ FD+D+ A I+ + L Sbjct: 454 KIRATNPCGEEPLY----EYESCNLASINLAKFVKYDEEGKPYFDWDEYAYVIQKVAKYL 509 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DN ID+N + + + R IG+G+MG AL L I Y S E + ++ E+++F Sbjct: 510 DNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYNSKEGYDFMRKATEYLTF 569 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 +A SVE A++RG + ++ + + G P++ LPWDEL + Sbjct: 570 YAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEG----------YYHREVWTLPWDELVEE 619 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RN PT +++ I S I+P + +Y KS G+F V+ ELK+ Sbjct: 620 IKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKK 679 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R LW + ++ + + GS+ +E IP+D++++ T+ +I + I + + Q W+ + S Sbjct: 680 RGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHWLDHILAQANIQLWLTDSAS 739 Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAVP 927 + + ++ + + + Y A+ +G K R S + SVE + V K +A Sbjct: 740 KTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRQRVKAKPSAYA 799 Query: 928 V 928 V Sbjct: 800 V 800 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 8/100 (8%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V +R + ++ N + V + + Sbjct: 5 KVMKRDGRIVPFDKERIKWAIQRAMLEV-------GVRDEKLL-NRVVRRVVKRVNELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 + HIE+IQD VE LM+ G + + Y+LYR++++++R Sbjct: 57 GQVPHIENIQDIVELELMRVGLFDVAKAYILYRKKKAEIR 96 >gi|238785707|ref|ZP_04629682.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] gi|238713392|gb|EEQ05429.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] Length = 761 Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 207/792 (26%), Positives = 345/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V +L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPELYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A++ W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAISSEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + +G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKLG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|18466787|ref|NP_569594.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506103|emb|CAD09989.1| putative ribonucleoside-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 771 Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 218/801 (27%), Positives = 341/801 (42%), Gaps = 103/801 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G+ + ++ +V +++VS+ V +++DG++ L AL+ Sbjct: 2 ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY++V AR L K+R++ Q YP ++ +I Sbjct: 62 SAADLISPETPNYSQVAARLSLFKIRKDAFG--------------QYDYPNFY-NHIVSN 106 Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 V + E ++ + ++ L +K +RD F Y L +Y + + G+ E P Sbjct: 107 VSRGVYDEDLLKYYSQEEIAELGVYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGP 166 Query: 318 QAFFMRVAMGL------ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLS 369 Q +M V M L + + FY++ S+F TP + +G R P Q S Sbjct: 167 QQLYMLVGMCLFQNWEDGCAGKTRLEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFS 224 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 225 SCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLK 284 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + +QGG R GA A+ WH++VE L L+ N G + R ++ I L Sbjct: 285 HFQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLM 344 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 +R+ +N TLFSP +V L+D + +FE Y YE AD K + I AV L+ Sbjct: 345 YRRLVRNENITLFSPHDVPGLYDAFFVDQDKFEELYLKYE--ADESIRK--KSIPAVDLF 400 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEET 597 ++ TG +I D N + VH SNLC EITL + S+ E Sbjct: 401 STLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDSNGEI 460 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 A+C L + NL A D L AV LD+++D + + A+ R++G Sbjct: 461 ALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLG 515 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G+ F L Y+ ++ E+ E I ++ + AS LA+ +GA F + + Sbjct: 516 IGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYA 575 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 QG P+D + E + ++PW+EL+ R++ G+RNS A P T + I Sbjct: 576 QGQLPVDHYRKTLDTNPETSFEL--KMPWEELRGRIREHGLRNSTLTAQMPCETSSQITN 633 Query: 778 VSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 + I+P + VKS+ G VV F + + LWD Sbjct: 634 STNGIEPPRGPVSVKSSKDGIVKMVVPDFAQLKDQYEYLWD------------------- 674 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLD-- 886 +PD+ + A QK+ DQA S N D P K L+ Sbjct: 675 MPDNRGYLTKVAI-------------IQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDL 721 Query: 887 -FIYRQAWLMGLKTTYYLRSR 906 F Y+Q G+KT YY +R Sbjct: 722 LFAYQQ----GVKTLYYHNTR 738 >gi|256844763|ref|ZP_05550245.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256613111|gb|EEU18318.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus 125-2-CHN] Length = 674 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 179/627 (28%), Positives = 295/627 (47%), Gaps = 77/627 (12%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 90 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 148 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 149 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 208 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 209 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 268 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 269 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 325 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 326 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 382 Query: 579 VHSSNLCTEIT-LNSSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI +N+ S CNLGS+N+ A + DKL + Sbjct: 383 IVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVS 438 Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +V+ L+ V D++C +IEK K+N RAIGLG M L HI Y SPEAVE Sbjct: 439 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 495 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732 I++HA S +LA+ GA+ FK S + D+ V P + E+ Sbjct: 496 TGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSP--KTDKIKEI 553 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + ++ W+EL ++K G+ N+N +A+APT +I+ + + S+ P + + Sbjct: 554 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 613 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 V ++ +N+ D+ + A+E+ Sbjct: 614 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 644 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE 879 P +I+ + QK++DQ+ SL L++++ Sbjct: 645 PNAIIDITAAAQKYVDQSISLTLFVED 671 >gi|254230293|ref|ZP_04923682.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp. Ex25] gi|262393880|ref|YP_003285734.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha [Vibrio sp. Ex25] gi|151937190|gb|EDN56059.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp. Ex25] gi|262337474|gb|ACY51269.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio sp. Ex25] Length = 760 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 215/799 (26%), Positives = 345/799 (43%), Gaps = 89/799 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y + + T H+ + R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVSRLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L + ++RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 291 CCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE IK + A+ ++ ++ Sbjct: 351 GNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ F Sbjct: 467 FNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E + ++ + ASVELA+E+G SF + + +G+ PID Sbjct: 522 YYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVELAKEQGKCPSFDETNYAKGLLPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D +L + WD L+K + G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDIDLICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + VK++ G VV F ELK + ++ ++ +DG Sbjct: 637 PPRGYVSVKASKDGILKQVVPEF--TELKD----NYELLWNIGSNDGY------------ 678 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAWL 894 +H QK++DQA S N D PS KKL A+ Sbjct: 679 -LHLVGI-------------MQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATSVEK 913 G+KT YY +R E+ Sbjct: 724 FGVKTLYYHNTRDGAKDEQ 742 >gi|261211024|ref|ZP_05925314.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC341] gi|260839999|gb|EEX66599.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC341] Length = 760 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 217/801 (27%), Positives = 343/801 (42%), Gaps = 91/801 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGE-YEPPTLFKH----------VTNMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE IK + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L +S S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A++S+ R +G+G++ + Sbjct: 466 AFNLGA--IESLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L WD+L+ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PS KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATSVEKS 914 G+KT YY +R E++ Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743 >gi|227328223|ref|ZP_03832247.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 761 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 215/794 (27%), Positives = 341/794 (42%), Gaps = 89/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 5 LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ ++ P TH + +E G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I A L+ M+ Sbjct: 351 EEITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAGELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A N+ D ++LA+ AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGA--INSLDDLEELAT---LAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + RD A+ N L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----RDLDAICNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ VK++ G VV + + LW D+ +DG Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDSYELLW------DMPNNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895 ++ QK++DQA S N D PSG K+L A+ Sbjct: 678 -------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKF 724 Query: 896 GLKTTYYLRSRSAT 909 G+KT YY +R Sbjct: 725 GVKTLYYQNTRDGA 738 >gi|16761203|ref|NP_456820.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141102|ref|NP_804444.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161594|ref|ZP_03347304.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424146|ref|ZP_03357024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612728|ref|ZP_03370554.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646445|ref|ZP_03376498.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25285839|pir||AC0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503502|emb|CAD07509.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136728|gb|AAO68293.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 761 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 210/792 (26%), Positives = 341/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVVACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 ++ QK+IDQ+ S N D PSGK +L A+ G Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|94676899|ref|YP_588830.1| ribonucleotide-diphosphate reductase subunit alpha [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220049|gb|ABF14208.1| ribonucleoside-diphosphate reductase, alpha subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 760 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 208/798 (26%), Positives = 348/798 (43%), Gaps = 95/798 (11%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 ++ L + DG N ++ ++ A GL++VS V ++ YDG+ SD+ Sbjct: 1 MSQSLLVTKRDGRKEPINLDKIHRVINWAADGLENVSVSQVELRSHIQFYDGIKTSDIHE 60 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI ++ P+Y + AR + LR++ T E LY ++ R Sbjct: 61 TIIKAAADLISRDAPDYQYLAARLAVLHLRKKAYGTF----------EPPTLY-DHVSRL 109 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 ++ G + L + + + + + RD F Y ++ L +Y + + G E Sbjct: 110 VKMGKYDQHLLKDYSFEEFTQMDKFINHWRDMDFAYAAVKQLEGKYLVQNRVTGEIYESA 169 Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L + T + FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 QFLYILVAACLFSSYPRTNRLDYIRRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R +G+ I G G IPF K Sbjct: 228 IECGDSLNSINATSSAIVKYVSRRAGIGINAGRIRAIGSQIRGGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGIETNRVRYMDYGVQINKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N TLFSP +V L+D + +FE Y YE+ + R I AV L+ M+ Sbjct: 348 VNNDQITLFSPSDVPGLYDAFFADQNKFEQLYCQYEKDVSIRK----RSIKAVELFSLMM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG ++ D CN SP +V + SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYVQHVDHCNNHSPFDVNVAPIRQSNLCLEIILPTKPIEDINEENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L ++NL N+ D+++L AVR LD ++D + + A++ R +G+G++ Sbjct: 464 LSALNLGT--INSLDDFEELT---MLAVRALDALLDYQSYPLTSAQRGALNRRPLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + + E I ++ + AS +LA+ERGA F + + QG+ Sbjct: 519 NYAYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNKLAKERGACPWFHETTYAQGIL 578 Query: 722 PIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PID+ L + V + L + W+ L+K +K G+RNS A+ P+ T + I + Sbjct: 579 PIDTYKKDLDSIVSEPLHYD------WESLRKDIKKSGLRNSTLSAMMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD----LWDEAMISDLKYHDGSIGNIE 835 I+P ++ +K++ +G ++ + ++ + LWD Sbjct: 633 NGIEPPRGHVSIKASKNG---ILRQVVPESVRLHNAYEFLWD------------------ 671 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFI 888 +P++ +H QK++DQ+ S N D P G K+L Sbjct: 672 -MPNNNGYLHLVGV-------------MQKFVDQSISANTNYDPSRYPYGKVPMKQLLKD 717 Query: 889 YRQAWLMGLKTTYYLRSR 906 A+ G+KT YY +R Sbjct: 718 LLTAYKFGIKTLYYQNTR 735 >gi|215487451|ref|YP_002329882.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|215265523|emb|CAS09926.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O127:H6 str. E2348/69] Length = 761 Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 212/794 (26%), Positives = 344/794 (43%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMS 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTR 735 >gi|238794994|ref|ZP_04638590.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] gi|238725697|gb|EEQ17255.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] Length = 761 Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 208/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFDH---------VSKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ D ++LA AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGA--IDSLDDLEELAV---LAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D ++ N W+ L+ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIS-NEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMGL 897 ++ QK++DQA S N D PSG K+L + G+ Sbjct: 678 -----------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGV 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|312872655|ref|ZP_07732720.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091697|gb|EFQ50076.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2062A-h1] Length = 725 Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 199/696 (28%), Positives = 317/696 (45%), Gaps = 85/696 (12%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y++ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDY-DKLASTIRTA 628 SNLC+EI +N+ SE CNLGS+N+ DY + + + Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIA-----KAMDYSEHFEHLVANS 432 Query: 629 VRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 433 IRALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFF 492 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR-- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 493 YATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFY 552 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 553 IPSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP--------------- 597 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +V ++ R E M+ + I N ++ K A+E+ P +I+ Sbjct: 598 ------VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDI 643 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 644 VAAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEG 697 Query: 919 VDG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 698 SENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|147669241|ref|YP_001214059.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. BAV1] gi|146270189|gb|ABQ17181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. BAV1] Length = 599 Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 188/648 (29%), Positives = 305/648 (47%), Gaps = 97/648 (14%) Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351 ++L RY + R IE P+ F RVA +A E T+ + EFY +S F Sbjct: 22 RVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQAMSRLEF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ +R G Sbjct: 82 LPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + G + + + A V QGG R+G A L+ H D+ F+ + GD Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISCK---GD 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 T+ + D FM +V + + +P Sbjct: 199 PNALTNFYISVVVTRD-FMTKVRSGEDYDIINPHT------------------------- 232 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V R+++A ++ ++ ++TG P + F D N +P + + + C E TL Sbjct: 233 GE--VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGCGEQTLL 290 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSI+L + DY+KL T++ A+R LDNVID+N + + Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K+ +R IGLG+MGF L L+ IPY S EA+ AD+ M+FI + AS +LA+ RG+ Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKLAEVRGS 406 Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + +++GS++D G P MRN+ C +I Sbjct: 407 FPAYEGSMYDVPGGRP-----------------------------------MRNATCTSI 431 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821 APT T++ I GVS I+PS+ ++V++ + G+ + + E+ +R+ + E ++ Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSRELFEKLV 491 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880 S HD +E IPD LK++ TA I P W I + QK+ D A S + + E Sbjct: 492 SSNHLHD-----MECIPDWLKRLLVTAHCIRPEWHIRIQAAFQKYTDNAVSKTVNFPHEA 546 Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924 + + ++ A+ GLK T Y SR+A + +S +K VD L+ Sbjct: 547 TRADMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQYLD 594 >gi|325912229|ref|ZP_08174626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 143-D] gi|325475888|gb|EGC79057.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 143-D] Length = 725 Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 199/695 (28%), Positives = 315/695 (45%), Gaps = 83/695 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++G Y+ Y L N + E + + RV M E A Sbjct: 84 YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G R + SC+L V D++ I ++ + L+K GG+ Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FLD Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521 ++ D++ R ++ IPD+ + +N LFSP D+ YGK + I Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+ +IK ISA L++ + + FE+G+P+I F+D N R+P + G + Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ SE CNLGS+N+ A D + + ++ Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433 Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 434 RALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740 +++A AS +LAQ+ GAYS FK S + G + D++ A ++D L Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R E M+ + I N + K A+E+ P +I+ Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDNT-----NYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ D+ + + L+ Y A+ T YY+R R + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698 Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V TD CT EC+VC Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723 >gi|260772918|ref|ZP_05881834.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP 69.14] gi|260612057|gb|EEX37260.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP 69.14] Length = 760 Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 216/790 (27%), Positives = 338/790 (42%), Gaps = 85/790 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++E A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVIEWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 SS LI +E P+Y + AR + LR++ Y+ P H +Y +E+ Sbjct: 64 KSSADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPALYDHVSAMVAKGKYDSHLLED 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 S +F L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 123 --------YSAEEFAL--MDTFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YLLVAACLFAKYPKATRLDFVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH + E L L+ N G + R M+ + L +R+ + Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYRRLVEG 350 Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + + EFE Y NYE IK R + A+ ++ ++ Sbjct: 351 GNITLFSPSDVPGLYDAFFQDQDEFERLYVNYENDP---SIKK-RTVKALEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+++LA + VR LD ++D + + A+KS R +G+G++ + Sbjct: 467 FNLGA--IEKLDDFEELAELV---VRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E + ++ + ASV LA+E+G +F + + +G+ PID Sbjct: 522 YYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVLLAKEQGRCPAFNETNYAKGLLPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L + WD L+ + G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTLC-DEPLHYDWDSLRNEIMEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + VK++ G VV F+ + LW ++ +DG Sbjct: 638 PRGYVSVKASKDGILKQVVPEFIKLKENYELLW------NIGSNDGY------------- 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMG 896 +H QK++DQA S N D SG KKL A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKYG 725 Query: 897 LKTTYYLRSR 906 +KT YY +R Sbjct: 726 VKTLYYHNTR 735 >gi|261822456|ref|YP_003260562.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium wasabiae WPP163] gi|261606469|gb|ACX88955.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium wasabiae WPP163] Length = 761 Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 212/793 (26%), Positives = 345/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 5 LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKSSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ ++ P TH + +E G Sbjct: 65 AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 351 EEITLFSPSDVPGLYDAFFANQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A N+ D + LA+ AVR LD ++D + I+ A++ R +G+G++ F Sbjct: 467 FNLGA--INSLDDLEDLAT---LAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + RD A+ N L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----RDLDAICNEPLHLDWETLRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ VK++ G ++ + +D ++ ++ ++ +DG Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L A+ G Sbjct: 678 ------------YLQLVGVMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|293415527|ref|ZP_06658170.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli B185] gi|291433175|gb|EFF06154.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli B185] Length = 761 Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 212/796 (26%), Positives = 344/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + + G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVGMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NLG+IN L D+L AVR LD ++D + I AK+ R +G+G Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ + D +A N W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G ++ + + D ++ ++ ++ +DG Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892 ++ QK+IDQ+ S N D PSGK +L A Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKFGVKTLYYQNTRDG 737 >gi|285803183|pdb|2X3S|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|285803184|pdb|2X3S|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|285803185|pdb|2X3S|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|294662329|pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|294662330|pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|294662331|pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli Length = 761 Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 189/673 (28%), Positives = 302/673 (44%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNL EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|317492552|ref|ZP_07950979.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919302|gb|EFV40634.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 761 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 218/815 (26%), Positives = 347/815 (42%), Gaps = 96/815 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVLDWAAEGLSNVSVSQVELRSHIQFYDGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTPEEFAQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L ++ R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRDTRLSYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE AD K +K+ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYMQYE--ADDSIRK--QKVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL N+ D ++LA AVR LD ++D + I AK+ R +G+G++ + Sbjct: 467 FNL--GVINSLDDLEELAV---LAVRALDALLDYQDYPILAAKRGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + N W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDTICNEPLHYDWEALRNDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++ +K++ DG + + D LK Sbjct: 637 PPRGHISIKAS--------------------------------KDGILRQVVPEYDRLKN 664 Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895 + +E+ + ++ QK+IDQ+ S N D PSG K+L A+ Sbjct: 665 AYELLWEMPNNDGYLQLVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKF 724 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 G KT YY +R + V L A P D Sbjct: 725 GAKTLYYQNTRDGA-------EDVQDDLQATPEDD 752 >gi|330941360|gb|EGH44212.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. pisi str. 1704B] Length = 202 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/203 (58%), Positives = 145/203 (71%), Gaps = 17/203 (8%) Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY Sbjct: 2 APTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKY 61 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 +DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD Sbjct: 62 YDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLD 121 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP----- 941 YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 122 VTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEA 179 Query: 942 ---------SSCTSD-TECEVCQ 954 +C D +CE CQ Sbjct: 180 APAGPAPVPKACAIDEPDCEACQ 202 >gi|149190929|ref|ZP_01869192.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii AK1] gi|148835284|gb|EDL52258.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii AK1] Length = 763 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 220/798 (27%), Positives = 335/798 (41%), Gaps = 85/798 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G S + +++ ++ A GL +VS V + + YDG++ SD+ +I Sbjct: 4 QLTVTKRNGRKESIDLEKIHRVIAWAAEGLNNVSVSQVELKAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E P+Y + AR + LR++ Y+ P H + +E Sbjct: 64 KSAADLISEDAPDYQYLAARLAIFHLRKKAYGQ-YEPPALFDH----------VSKMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L E +L L + + + RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDAHLLEDYTKSELDELDSYIDHTRDHDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 291 CCSQGGVRGGAATVFYPMWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYARLVQG 350 Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + + EFE Y YE IK + AV L+ ++ Sbjct: 351 GNITLFSPSDVPGLYDAFFEDQDEFERLYVKYENDP---SIKK-ETVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L VR LD ++D + + A KS R +G+G++ + Sbjct: 467 FNLGA-----INELDDLKDLSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID Sbjct: 522 YYLAKNGVKYSDGSANNLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + +L + WD L+ + G+RNS A+ P+ T + I + I+P Sbjct: 582 TY----KNDVDLVCDEPLHYDWDALRSEIMEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + VK++ G VV F + LW+ IGN + Sbjct: 638 PRGYVSVKASKDGILKQVVPDFANLKENYELLWN-------------IGNNDGY------ 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMG 896 +H QK++DQA S N D SG KKL A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPSVYESGKVPMKKLLQDLLTAYKYG 725 Query: 897 LKTTYYLRSRSATSVEKS 914 +KT YY +R ++S Sbjct: 726 VKTLYYHNTRDGAKDDQS 743 >gi|238760195|ref|ZP_04621341.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] gi|238701574|gb|EEP94145.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] Length = 761 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 207/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYSAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 M V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 MLVSACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYEAFFADQDEFERLYTQYEQDDNIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGAIES-----LDDLEELAELAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ N W+ L+ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAISNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|270262778|ref|ZP_06191049.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] gi|270043462|gb|EFA16555.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] Length = 762 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 184/673 (27%), Positives = 303/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H R +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLLAH----------VTRMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYNSEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFANQDEFERLYTLYEKDDSIRQ----KRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D ++LA+ AVR LD ++D + I+ A + R +G+G++ + Sbjct: 467 FNLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS LAQE+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANSLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + +V + W+ L+K +K G+RNS A+ P+ T + I + I+P Sbjct: 582 TYKKDLDV----ICDEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 ++ +K++ G Sbjct: 638 PRGHISIKASKDG 650 >gi|289526538|pdb|2X59|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|289526539|pdb|2X59|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|289526540|pdb|2X59|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|294662336|pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|294662337|pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|294662338|pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli Length = 761 Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 189/673 (28%), Positives = 302/673 (44%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNL EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A NN D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|56807675|ref|ZP_00365559.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus pyogenes M49 591] Length = 587 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 182/638 (28%), Positives = 295/638 (46%), Gaps = 97/638 (15%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT NSG R + SC+L V D++ I A+ + L+K GG+ T +R Sbjct: 10 FQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRE 69 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD ++ Sbjct: 70 IGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKREN 129 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527 D++ R + IPD+ + +N LFSP D+ YGK+ +I+ E Y++ Sbjct: 130 ADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEEYDK 186 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 IK ISA L++ + + FE+G+P++ F D N R+P G + SNLC+E Sbjct: 187 LLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLCSE 245 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD-- 633 I S+ E CNLGSIN+ A D I T++R LD Sbjct: 246 IAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----DAPHFEQLITTSIRALDRV 301 Query: 634 -NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+NC ++E +NH A+GLG M L HI Y + EAV+ D ++ Sbjct: 302 SRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMA 358 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------- 743 ++A AS +LA+E+GA++ F S + G + A+ E A +T++ Sbjct: 359 YYAFKASCQLAKEKGAFAGFSLSTYADGTY-------FAKYLQEDAKPQTAKVATLLQDY 411 Query: 744 ---LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 LP W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S Sbjct: 412 GFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGS 471 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 V ++ +N+ ++ Y++ A+E+ P + Sbjct: 472 LGRIYVPAYQINQ------------ANYTYYERG-----------------AYEVGPKAI 502 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I+ + QK +DQA SL L++ D+ + + L+ Y QA+ + YY+R R + Sbjct: 503 IDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR------QDV 556 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L G + VT P +S + TEC+ C Sbjct: 557 LAGSEQYDEDSLVTAPGASDE---------TTTECQSC 585 >gi|269963957|ref|ZP_06178266.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi 1DA3] gi|269831300|gb|EEZ85450.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi 1DA3] Length = 760 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 217/798 (27%), Positives = 345/798 (43%), Gaps = 97/798 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLYNH----------VARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V+ L KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + +EFE Y YE IK + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ F Sbjct: 466 AFNLGA--IKSLDDFEELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580 Query: 724 DS----IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D+ + L+ E +EL + WD L++ + G+RNS A+ P+ T + I + Sbjct: 581 DTYKKDVDLICE--EELHYD------WDSLRQEIMEHGLRNSTLTALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + VK++ G VV F ELK + ++ ++ +DG Sbjct: 633 NGIEPPRGFVSVKASKDGILKQVVPDF--TELKD----NYELLWNIGSNDGY-------- 678 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYR 890 +H QK++DQA S N D PSG KKL Sbjct: 679 -----LHLVGI-------------MQKFVDQAISANTNYD-PSGYESGKVPMKKLLQDLL 719 Query: 891 QAWLMGLKTTYYLRSRSA 908 A+ G+KT YY +R Sbjct: 720 TAYKFGVKTLYYHNTRDG 737 >gi|238753721|ref|ZP_04615082.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] gi|238707957|gb|EEQ00314.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] Length = 761 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 203/792 (25%), Positives = 340/792 (42%), Gaps = 85/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + ++ G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFDH---------VSKMVDMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E D + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYTAEDFQQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACLFSGYPRHTRMDYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ Q Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLQGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + ++FE Y YE+ + + +++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQEQFERLYTQYEQDSSIRQ----QRVKAVELFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDPNGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D+L AVR LD ++D + IE A++ R +G+G++ + Sbjct: 468 NLGAIDS-----LDELEDLANLAVRALDALLDYQDYPIEAARRGAMGRRTLGVGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ Sbjct: 523 YLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNHLAREQGACEWFNETTYSQGILPIDT 582 Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L + DE W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 583 YKKDLDAISDE-----PLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + ++ ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWEMPNNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMGL 897 ++ QK+IDQA S N D PSG K+L + G+ Sbjct: 678 -----------YLQLVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTTYKFGV 726 Query: 898 KTTYYLRSRSAT 909 KT YY +R Sbjct: 727 KTLYYQNTRDGA 738 >gi|319760601|ref|YP_004124539.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039315|gb|ADV33865.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Blochmannia vafer str. BVAF] Length = 763 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 213/822 (25%), Positives = 358/822 (43%), Gaps = 108/822 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N +++ ++ A GL+ +S V ++ Y+G+ SD++ +I Sbjct: 5 LLVTKRDGHHEPINLEKIHRVINWAAQGLEKISVSQVELRSHIQFYNGIKTSDIQETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI KE P+Y + AR + LR++ +P K H + R ++ G Sbjct: 65 AAADLISKEEPDYQYLAARLSVFHLRKKAYGQF--EPPKLYDHVL---------RLVKIG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLNDYTHNEFEQMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + A L K + + +FYN +S+F +TP + SG R P Q SSC L Sbjct: 174 ILTAACLFAKYPKNTRMDYIKKFYNAISTFKISLATPIM--SGVRTPTRQFSSCVLIECD 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R +G+ I G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVAQRAGIGINAGRIRAIGSPIRNGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH+++E L L+ N G + R ++ I L +R+ Sbjct: 292 CSQGGVRGGAATLFYPIWHLEIENLLVLKNNRGVESNRIRHLDYGVQINKLMYQRLITGK 351 Query: 498 GWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V DL++ + + F+ Y YE ++ KI A+ L+ M+ Sbjct: 352 HITLFSPADVPDLYESFFSDQNLFDYLYHKYENDHKIRQL----KIKAIELFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP + + SNLC EITL N ++ E A+C L + Sbjct: 408 STGRIYIQHTDHCNTHSPFNSALAPIRQSNLCLEITLPTKPLNNINDTNGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL NN D +L++ I VR LD ++D + + A+ S R++G+G++ + Sbjct: 468 NLGN--LNNLDDLSELSTLI---VRALDALLDYQSYPVLAAQYSAKNRRSLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + + E I ++ + AS LA+E+GA + F + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANTLTHHTFEAIQYYLLKASNLLAKEKGACAWFDDTSYAQGILPIDT 582 Query: 726 IGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +D + ++ R W+EL+ ++K G+RNS A+ P+ T + I + I+P Sbjct: 583 YK-----KDLDYIISEPLRYNWEELRNQIKQYGLRNSTVSALMPSETSSQISNSTNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G V + N E++ Sbjct: 638 PRGYISIKASKDGILRQV----------------------------VPNCEKL------- 662 Query: 845 HATAFEIDPMW-------LIESASRRQKWIDQAQSLNLYLDEPSG--------KKL--DF 887 A+ +E+ +W +E QK+IDQ+ S N+ D PS K+L D Sbjct: 663 -ASNYEL--LWNIPNNQGYLELVGIMQKFIDQSISTNMNYD-PSCFPESKVPIKQLLSDL 718 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 +Y A+ +G+KT YY +R S T K ++ N P T Sbjct: 719 LY--AYKLGIKTLYYHNTRDGFS---ETQKKIEYNNNHQPNT 755 >gi|90581240|ref|ZP_01237038.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum S14] gi|90437611|gb|EAS62804.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum S14] Length = 755 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 213/806 (26%), Positives = 353/806 (43%), Gaps = 89/806 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++E A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ ++ P+ LY E+ + + Sbjct: 64 KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LY-EHVKNLVAK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L E + + + N + + RD F Y ++ L +Y + ++G E Q Sbjct: 113 GKYDGHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ +A L + KE R FY+ +S F S PT SG R P Q SSC L Sbjct: 173 YVLIAAAL-FNKYPKETRLDYIKRFYD--ASSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G IPF K Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 290 KCCSQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +LFSP +V ++D + +EFE Y YE+ + IK I A+ L+ ++ Sbjct: 350 GESISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDS---SIKR-ETIKAIDLFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D L VR LD ++D + + A++S R +G+G++ F Sbjct: 466 AFNLGAIDS-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + E+ E I ++ + ASV LA+E+GA +F + + QG+ PI Sbjct: 521 AYYLAKNGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ ++ + + R W+ L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 581 DTYK--KDINNICSAEL--RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK++ G ++ + K +D ++ ++ ++ +DG Sbjct: 637 PPRGFVSVKASKDG---ILKQVVPEYAKYKDNYE--LLWNIGNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAWL 894 ++ QK+IDQA S N D + +G K+ D + A+ Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLL--NAYK 723 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920 +G+KT YY +R S + + D Sbjct: 724 LGVKTLYYHNTRDGASDSQGDMAADD 749 >gi|157371508|ref|YP_001479497.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia proteamaculans 568] gi|157323272|gb|ABV42369.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia proteamaculans 568] Length = 762 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 183/673 (27%), Positives = 305/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ H R +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLLAH----------VTRMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L ++ R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRDTRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRQ----KRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D ++LA+ AVR LD ++D + I+ A + R +G+G++ + Sbjct: 467 FNLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIKAAHRGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS LAQE+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANALTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + +V + ++ W+ L+K +K G+RNS A+ P+ T + I + I+P Sbjct: 582 TYKKDLDVICQEPLH----YDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 ++ +K++ G Sbjct: 638 PRGHISIKASKDG 650 >gi|225869035|ref|YP_002744983.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. zooepidemicus] gi|225702311|emb|CAX00108.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. zooepidemicus] Length = 724 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 189/680 (27%), Positives = 317/680 (46%), Gaps = 80/680 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y++ F+F +G Y Y L ++GS + + F R M + + Sbjct: 84 YQQKFSFLSLMGAMKFYQSYALKSLDGS--QYLEHFEDRAVMNALFLANGDPDLVRDLID 141 Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + S F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 142 QILSRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R +G+ I G ++ G++P +K+ D+ NQ G+R+GA YL H ++ FL Sbjct: 202 LTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522 D ++ D++ R + IPD+ + +N LFSP D+ +YGK+ +IA Sbjct: 262 DTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAI 318 Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+R IK ISA L++ + + FE+G+P++ F D N R+P G + Sbjct: 319 TEEYDRLVANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVM 377 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI S++ E CNLGSIN +A + +++L I T++ Sbjct: 378 SNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSIN-IAEAMKHAAGFEQL---IATSI 433 Query: 630 RVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LD+V D++C ++EK +NH A+GLG M L HI Y S EAV+ D Sbjct: 434 RALDHVSRASDVSCAPSVEKGNAANH---AVGLGAMNLHGFLATNHIFYDSAEAVDFTDL 490 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELA 737 ++++A AS +LA+E+GA++ F+ S + G + +A + + Sbjct: 491 FFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYG 550 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 S W EL ++ G+ N++ MA+APT +I+ + + S+ P + V+ Sbjct: 551 FRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHL 610 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 V ++ ISD D+ A+E+ P +I Sbjct: 611 GRIYVPAY--------------QISD---------------DNYAYYERGAYEVGPEPII 641 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + QK +DQA SL L++ D+ + + L+ Y A+ + + YY+R R + L Sbjct: 642 NIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR------QDVL 695 Query: 917 KGVDG--KLNAVPVTDPNSS 934 +G + + VP TD N+S Sbjct: 696 EGSEQYEEDTIVPFTDTNAS 715 >gi|52788093|ref|YP_093921.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis] gi|145597235|ref|YP_001154699.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Pestoides F] gi|229896975|ref|ZP_04512134.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit [Yersinia pestis Pestoides A] gi|52538022|emb|CAG27447.1| putative ribonucleoside-diphosphate reductase alpha subunit [Yersinia pestis] gi|145213003|gb|ABP42408.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Pestoides F] gi|229700011|gb|EEO88051.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit [Yersinia pestis Pestoides A] Length = 771 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 220/803 (27%), Positives = 340/803 (42%), Gaps = 107/803 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G+ + ++ +V +++VS+ V +++DG++ L AL+ Sbjct: 2 ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY +V AR L K+R++ Q YP ++ +I Sbjct: 62 SAADLISPETPNYLQVAARLNLFKIRKDAFG--------------QYDYPNFY-NHIVSN 106 Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 V + E ++ + ++ L +K +RD F Y L +Y + + G+ E P Sbjct: 107 VSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGP 166 Query: 318 QAFFMRVAM--------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--Q 367 Q +M V M G A K + R FY++ S+F TP + +G R P Q Sbjct: 167 QQLYMLVGMCLFQNWEDGCAGKTRLEMVRG--FYDVTSTFKLSLPTPIM--AGVRTPTRQ 222 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC L D L GI A G+G + +R LG+ I GVIPF Sbjct: 223 FSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPF 282 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + +QGG R GA A+ WH++VE L L+ N G + R ++ I Sbjct: 283 LKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINR 342 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVA 544 L +R+ N TLFSP +V L+D + +FE Y YE AD K + I AV Sbjct: 343 LMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYE--ADESIRK--KSIPAVD 398 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSE 595 L+ ++ TG +I D N + VH SNLC EITL + + Sbjct: 399 LFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNG 458 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E A+C L + NL A D L AV LD+++D + + A+ R+ Sbjct: 459 EIALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRS 513 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+ F L Y+ ++ E+ E I ++ + AS LA+ +GA F + Sbjct: 514 LGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTK 573 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + QG P+D + E + ++PW+EL+ R++ G+RNS A P T + I Sbjct: 574 YAQGQLPVDHYRKTLDTNPETSFEL--KMPWEELRGRIREHGLRNSTLTAQMPCETSSQI 631 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + I+P + VKS+ G VV F + + LWD Sbjct: 632 TNSTNGIEPPRGPVSVKSSKDGIVKMVVPDFAQLKDQYEYLWD----------------- 674 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLD 886 +PD+ + A QK+ DQA S N D P K L+ Sbjct: 675 --MPDNRGYLTKVAI-------------IQKFFDQAISANTNYDPTRFPGDKVPMMKLLE 719 Query: 887 ---FIYRQAWLMGLKTTYYLRSR 906 F Y+Q G+KT YY +R Sbjct: 720 DLLFAYQQ----GVKTLYYHNTR 738 >gi|238797462|ref|ZP_04640961.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] gi|238718733|gb|EEQ10550.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] Length = 761 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 209/793 (26%), Positives = 343/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + + + +++ E Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFAHVTKMVDMGKYDKHLLED 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 A E M F + + RD F Y ++ L +Y + ++G E Q + Sbjct: 123 YTAEEF-EQMDTF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 M V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 MLVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAKEQGACQWFNETTYSQGILPID 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDAISDE-----PLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + ++ ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|313672578|ref|YP_004050689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Calditerrivibrio nitroreducens DSM 19672] gi|312939334|gb|ADR18526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Calditerrivibrio nitroreducens DSM 19672] Length = 762 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 174/617 (28%), Positives = 294/617 (47%), Gaps = 79/617 (12%) Query: 297 GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSF 349 + +L RY + G +E P+ F RVA+ +A K+ + + A +FY+++ Sbjct: 18 AITVLKKRYLKRDSEGKLLETPKEMFQRVAINIAQADLNYNKDADIAETARKFYDIMVDL 77 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N+G QLS+CF+ V D L IF A++ A++ K GG G ++ +R Sbjct: 78 KFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSFSRLRP 137 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 + T G S G I F+ V + + QGG R+GA L H D+ +F+ +K Sbjct: 138 KDDVVKTTKGVSSGPISFISVFDAATEVIKQGGTRRGANMGILRVDHPDIMDFIYAKK-- 195 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D+ + + N + + + FMK V + + L +P + Sbjct: 196 --DKTKLTNFNLSVGLTEEFMKAVEEGKDFELINPRDK---------------------- 231 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 KV K++A ++ +M+ + +E G P I F D N +P G + S+N C E Sbjct: 232 -----KVVGKLNARKVFDEMVQLAWEGGDPGIIFLDRINKANPTPKEGEIESTNPCGEQP 286 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L CNLGSINL + + D+++L I T+V LDNVID+N + I + + Sbjct: 287 LLPYES----CNLGSINLAKFIKDKKIDWEELKYVIHTSVHFLDNVIDMNKYPIPEIEYM 342 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 +R IGLGLMG+ AL LL IPY S E +E+A++ M+F + + AS +LA+ RG++ Sbjct: 343 TKKNRKIGLGLMGWADALALLEIPYNSYEGIELAEKVMKFFNDESKIASSKLAEVRGSFP 402 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F+ S++ + F +RN+ IAPT Sbjct: 403 NFEDSIYPEMGFKY----------------------------------LRNATTTTIAPT 428 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S ++P + + ++ M V VN + +K+ ++ E ++ + Sbjct: 429 GTISIIGNASSGVEPYFAIAFYRNVMDNTKLVEVNPYFKQAVKEYGIYSEELMEKIA-EK 487 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887 G + +I +P+ LKKI TA EI P+W ++ + QK+ D A S + + + + + + Sbjct: 488 GILKDIPEVPEKLKKIFVTAHEISPIWHVKMQAAFQKYTDNAVSKTVNFSHDATVEDVKN 547 Query: 888 IYRQAWLMGLKTTYYLR 904 +Y A+ +G K R Sbjct: 548 VYLLAYKLGCKGITIYR 564 >gi|167036756|ref|YP_001664334.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115179|ref|YP_004185338.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855590|gb|ABY93998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928270|gb|ADV78955.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 770 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 183/625 (29%), Positives = 289/625 (46%), Gaps = 84/625 (13%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSFHF 351 ++L RY NG IE + F RVA +A + + + AV+ FY+++ F Sbjct: 9 KVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFYDMMVDLDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V ++ + L P Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N C E L Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSINL + DYDKL T+ AV LDNVID N + + + + Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF + L L IPY S EAV++ +E MEFI + AS++LA++RG Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASIKLAEQRGT 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S++ + I +RN+ IA Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT TI+ I G S I+P + ++ M + VN +R + E ++ ++ Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 GS+ +I+ IP+D+K++ A +ID W ++ + QK +D A S + + +E + + + Sbjct: 479 R-GSLKDIKGIPEDVKRVFVIAHDIDHEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910 Y A+ +G K R S S Sbjct: 538 RRTYLLAYKLGCKGVTIYRDGSRES 562 >gi|37679428|ref|NP_934037.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio vulnificus YJ016] gi|37198172|dbj|BAC94008.1| ribonucleotide reductase, alpha subunit [Vibrio vulnificus YJ016] Length = 767 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 222/803 (27%), Positives = 346/803 (43%), Gaps = 97/803 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++L ++ A GL +VS V + YDG++ SD+ +I Sbjct: 11 QLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 70 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ R ++ Sbjct: 71 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVARLVDM 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF+ ++G E Q Sbjct: 120 GKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 179 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 180 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 236 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 237 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 296 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 297 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 356 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE +K + AL +M T+ Sbjct: 357 GGNITLFSPSDVPGLYDAFFENQAEFERLYVKYENDPS------IKKETVKAL--EMFTL 408 Query: 553 LFE----TGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAV 599 L + TG +I D CN SP V V SNLC EI L + S E A+ Sbjct: 409 LMQERASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIAL 468 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A N D +L+ + VR LD ++D + + A KS R +G+G Sbjct: 469 CTLSAFNLGA--INTLDDLKELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVG 523 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A + + E I ++ + ASVELA+E+G F + + +G Sbjct: 524 VINYAYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKG 583 Query: 720 VFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + PID+ +D +L + WD L+ + G+RNS A+ P+ T + I Sbjct: 584 LMPIDTYK-----KDIDLICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNA 638 Query: 779 SQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P + VK++ G VV F+ ELK + ++ ++ +DG Sbjct: 639 TNGIEPPRGYVSVKASKDGILKQVVPDFI--ELKN----NYELLWNIGSNDGY------- 685 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYR 890 +H QK++DQA S N D SG KKL Sbjct: 686 ------LHLVGI-------------MQKFVDQAISANTNYDPARYESGKVPMKKLLQDLL 726 Query: 891 QAWLMGLKTTYYLRSRSATSVEK 913 A+ G+KT YY +R E+ Sbjct: 727 TAYKFGVKTLYYHNTRDGAKDEQ 749 >gi|262402401|ref|ZP_06078962.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC586] gi|262351183|gb|EEZ00316.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC586] Length = 760 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 216/801 (26%), Positives = 342/801 (42%), Gaps = 91/801 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGE-YEPPTLFKH----------VTNMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP + L+D + + EFE Y YE IK + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDAPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L +S S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A++S+ R +G+G++ + Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L WD+L+ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PS KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSATSVEKS 914 G+KT YY +R E++ Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743 >gi|27366310|ref|NP_761838.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio vulnificus CMCP6] gi|320156820|ref|YP_004189199.1| ribonucleotide reductase of class Ia (aerobic), subunit alpha [Vibrio vulnificus MO6-24/O] gi|27362511|gb|AAO11365.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio vulnificus CMCP6] gi|319932132|gb|ADV86996.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Vibrio vulnificus MO6-24/O] Length = 760 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 222/803 (27%), Positives = 346/803 (43%), Gaps = 97/803 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++L ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE +K + AL +M T+ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQAEFERLYVKYENDPS------IKKETVKAL--EMFTL 401 Query: 553 LFE----TGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAV 599 L + TG +I D CN SP V V SNLC EI L + S E A+ Sbjct: 402 LMQERASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIAL 461 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A N D +L+ + VR LD ++D + + A KS R +G+G Sbjct: 462 CTLSAFNLGA--INTLDDLKELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A + + E I ++ + ASVELA+E+G F + + +G Sbjct: 517 VINYAYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKG 576 Query: 720 VFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + PID+ +D +L + WD L+ + G+RNS A+ P+ T + I Sbjct: 577 LMPIDTYK-----KDIDLICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNA 631 Query: 779 SQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P + VK++ G VV F+ ELK + ++ ++ +DG Sbjct: 632 TNGIEPPRGYVSVKASKDGILKQVVPDFI--ELKN----NYELLWNIGSNDGY------- 678 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYR 890 +H QK++DQA S N D SG KKL Sbjct: 679 ------LHLVGI-------------MQKFVDQAISANTNYDPARYESGKVPMKKLLQDLL 719 Query: 891 QAWLMGLKTTYYLRSRSATSVEK 913 A+ G+KT YY +R E+ Sbjct: 720 TAYKFGVKTLYYHNTRDGAKDEQ 742 >gi|42557734|emb|CAF28708.1| putative ribonucleotide reductase alpha subunit [uncultured crenarchaeote] Length = 906 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 170/585 (29%), Positives = 288/585 (49%), Gaps = 62/585 (10%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 R VE+YNL+ S F+ +TPTL N+G + QLS+CF+ + DD+ GI + + AM+ K Sbjct: 259 RIVEYYNLMVSKDFLPNTPTLMNAGAKLGQLSACFVLDMKDDMSGIMKSSTDAAMIFKSG 318 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G +++ +R G + T+G + G I F+++ + V QGGKR+GA +E+WH Sbjct: 319 GGVGINYSNLRPEGDIVASTSGVASGPISFMRIIDTITDVVKQGGKRRGANMGIMESWHP 378 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+E+F+ TA P +F W+ F +++ + Y + Sbjct: 379 DIEKFV-----------------TAKTKPGVFENFNVSVGIWSDFWQSIINENNHKYNLK 421 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV- 576 E +Q D ++ SA W+ + P + F D N +P +V Sbjct: 422 NPTTQEPI-KQIDSHQLLDLITFSA---WK--------SAEPGVIFFDNINKYNPCINVK 469 Query: 577 -GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAV 629 G + ++N C E +L CNLGSINL A+F ++FD+ + IR + Sbjct: 470 EGPLRATNPCGEQSLYPYES----CNLGSINL-ANFVKRSVDGKHEFDWQRYEQAIRLST 524 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R LDNVID+N + +E+ + + R IGLG+MG L L IPY S E + + E Sbjct: 525 RFLDNVIDMNKYPVEEIEHNTKLTRRIGLGIMGIADLLFTLGIPYNSKEGYDFMNRVAEA 584 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQG-VFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 +S++++ SV +A+ R + F + + +G + P+ + + R WD Sbjct: 585 LSYYSMEESVAIAKARDPFPLFNQTDYVEGKMIPVAGYYEIPK--------RYHSYDWDS 636 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L ++++ G+RNS IAPT T++ I S ++P + ++ K G F N N Sbjct: 637 LIEKIEKYGIRNSWTTTIAPTGTLSMIADTSNGVEPVFALVFEKRVTVGRFFYTNRIFEN 696 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 LK+ L+++ +++ + + GS+ + IP+ L+KI TA ++ + + + QKWI Sbjct: 697 ILKENGLYNDEILTKIANNYGSVRGLPEIPEWLQKIFVTAIDVHWTDHLMAQAVWQKWIS 756 Query: 869 Q--AQSLNLYLDEPSGKKLDFIYRQAWL----MGLKTTYYLRSRS 907 A+++N+ PS ++ I + A+L MGLK R S Sbjct: 757 NAIAKTINM----PSDVTVEDI-KAAYLLSHEMGLKGVTVYRDGS 796 Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 10/103 (9%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK- 88 Q+ KR+ G+ F+ SKIS AI KA MA GK S+ + + L+E+ V ++ Q Sbjct: 21 QIRKRDKGLVDFNNSKISNAIYKALMAA-GKADSK------LAERLSEKVVQKMDQQFSI 73 Query: 89 --SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 + + +ED+QD VE L++ G + + Y+LYR ER VR Sbjct: 74 LDTNRVPSVEDVQDMVESILIEEGLSETAKAYILYRHERRKVR 116 >gi|45478634|ref|NP_995490.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|45357287|gb|AAS58681.1| putative ribonucleoside-diphosphate reductase alpha subunit [Yersinia pestis biovar Microtus str. 91001] Length = 771 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 220/803 (27%), Positives = 340/803 (42%), Gaps = 107/803 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G+ + ++ +V +++VS+ V +++DG++ L AL+ Sbjct: 2 ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY +V AR L K+R++ Q YP ++ +I Sbjct: 62 SAADLISPETPNYLQVAARLNLFKIRKDAFG--------------QYDYPNFY-NHIVSN 106 Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 V + E ++ + ++ L +K +RD F Y L +Y + + G+ E P Sbjct: 107 VSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGP 166 Query: 318 QAFFMRVAM--------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--Q 367 Q +M V M G A K + R FY++ S+F TP + +G R P Q Sbjct: 167 QQLYMLVGMCLFQNWEDGCAGKTRLEMVRG--FYDVTSTFKLSLPTPIM--AGVRTPTRQ 222 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSC L D L GI A G+G + +R LG+ I GVIPF Sbjct: 223 FSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPF 282 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LK + +QGG R GA A+ WH++VE L L+ N G + R ++ I Sbjct: 283 LKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINR 342 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVA 544 L +R+ N TLFSP +V L+D + +FE Y YE AD K + I AV Sbjct: 343 LMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYE--ADESIRK--KSIPAVD 398 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSE 595 L+ ++ TG +I D N + VH SNLC EITL + + Sbjct: 399 LFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNG 458 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E A+C L + NL A D L AV LD+++D + + A+ R+ Sbjct: 459 EIALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRS 513 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+ F L Y+ ++ E+ E I ++ + AS LA+ +GA F + Sbjct: 514 LGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTK 573 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + QG P+D + E + ++PW+EL+ R++ G+RNS A P T + I Sbjct: 574 YAQGQLPVDHYRKTLDTNPETSFEL--KMPWEELRGRIREHGLRNSTLTAQMPCETSSQI 631 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + I+P + VKS+ G VV F + + LWD Sbjct: 632 TNSTNGIEPPRGPVSVKSSKDGIVKMVVPDFAQLKDQYEYLWD----------------- 674 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLD 886 +PD+ + A QK+ DQA S N D P K L+ Sbjct: 675 --MPDNRGYLTKVAI-------------IQKFFDQAISANTNYDPTRFLAIRFPMMKLLE 719 Query: 887 ---FIYRQAWLMGLKTTYYLRSR 906 F Y+Q G+KT YY +R Sbjct: 720 DLLFAYQQ----GVKTLYYHNTR 738 >gi|206602949|gb|EDZ39429.1| Ribonucleotide reductase [Leptospirillum sp. Group II '5-way CG'] Length = 732 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 175/621 (28%), Positives = 282/621 (45%), Gaps = 86/621 (13%) Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLAL---KETEKEKRAVEFYNLLSSFHFMC 353 L++L RY + E P+ F R+A +A + +E+E A E+Y ++S F+ Sbjct: 14 LKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFMASLDFLP 73 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 ++PT+ N+G QLS+CF+ V D + IF ++ A++ + GG G ++ +R GA Sbjct: 74 NSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSRLRPKGAV 133 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + T G++ G + F+KV N + A+ QGG R+GA L H D+ EF+D + D Sbjct: 134 VRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCKM----DL 189 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + + N + I D+FMK V ++ + L +P + L +E Sbjct: 190 TQVTNFNISVAITDVFMKAVKEDGEYDLIAPHNGEVVGKLRARE---------------- 233 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 VF KI+ A + G P + F D N +P ++N C E L Sbjct: 234 --VFDKIAHNA---------WANGEPGLFFIDTANRANPTPSRWTYEATNPCGEQVLGPY 282 Query: 594 SEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL H N + D+++L ++ AVR LDNV+D N I + Sbjct: 283 ES----CNLGSINLERHVRSSATGNPEVDWERLGRSVYLAVRFLDNVVDANRFPIPELAA 338 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 N R IGLG+MGF L L IPY S E +E+A++ M FI A S +LA+ G Sbjct: 339 VNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDLAKVHGP- 397 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 FP ++++ R RNS+ + IAP Sbjct: 398 ------------FPY----------------------YEDIGTR-----KRNSHLLTIAP 418 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYH 827 T TI+ I S +P + ++ K+ M G + + +R+ W + + + + Sbjct: 419 TGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEVVARREGFWSDGLAEKIVQN 478 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 GS + +P+ +K+ ATA +I P W + + QK+ID A S + L E + + ++ Sbjct: 479 HGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQEATVEDVE 538 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 Y ++ +G K R S Sbjct: 539 DAYLLSFELGCKGITVYRDGS 559 >gi|119387082|ref|YP_918137.1| ribonucleoside-diphosphate reductase, alpha subunit [Paracoccus denitrificans PD1222] gi|119377677|gb|ABL72441.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Paracoccus denitrificans PD1222] Length = 708 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 193/661 (29%), Positives = 302/661 (45%), Gaps = 70/661 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y R F F +LG Y Y L R +E + + VA+ LA + E A+ Sbjct: 86 DAAYARKFRFPTFLGAFKYYTSYTLKTRDGRRYLERYEDRVVMVALALARGD---EDLAM 142 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 F + S F +TPT N+G + +L SCFL + D++ I + L+K GG Sbjct: 143 RFMEEILSGRFQPATPTFLNAGKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 202 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I G +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 203 VALMLTNLREAGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 262 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L E Sbjct: 263 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNEDMYLFSPHDVEKVYGLPFSEIS 322 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ +KI+A A ++ + + FE+G+P+I F+D N +P G + Sbjct: 323 VT-EKYAEMVDDKRIRK-KKINARAFFQTLAEIQFESGYPYIMFEDTVNRANPV--AGRI 378 Query: 580 HSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI +N +SE CNLGS+N+ A D +T+ Sbjct: 379 SMSNLCSEILQVNEASEFDEDLGYRHLGTDISCNLGSLNIAA-----TMDGPDFGATVEA 433 Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V +++ + ++ N A+GLG M L I Y SPE VE Sbjct: 434 AIRALTAVSEMSAIEAVPSIRRGNDEAHAVGLGQMNLHGFLARERIHYGSPEGVEFTSVY 493 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV-RDELAMN 739 +++HAI AS LAQE+G + F S + G F D + L +V R ++ Sbjct: 494 FAAVAYHAIRASNLLAQEKGRTFKDFDKSKYADGSFFDKYVAQDWLPTLPDVARVFEGVS 553 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798 +R W L++ V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 554 LPTREDWAALRESVMRHGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKIEIRKEGKIGR 613 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +F+ NE +L Y+ A+EI P +I+ Sbjct: 614 VYYPAAFMSNE-------------NLDYY------------------RDAYEIGPEAIID 642 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + + +DQ SL L+ E + + ++ AW G+KT YY+R R T++E + ++ Sbjct: 643 TYAAATEHVDQGLSLTLFFPAEATTRDINRAQIYAWKKGIKTIYYIRLRQ-TALEGTEVQ 701 Query: 918 G 918 G Sbjct: 702 G 702 >gi|261340637|ref|ZP_05968495.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|288317050|gb|EFC55988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] Length = 761 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 216/797 (27%), Positives = 339/797 (42%), Gaps = 97/797 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L ++ R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRDTRLEYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ E +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKD----ESIRKQRVKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + G+++E L W+ L++ +KT G+RNS A+ P+ T + I + Sbjct: 582 TYKKDLDGIVSE---------PLHLDWEGLRESIKTHGLRNSTLSALMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P ++ +K++ G VV + LW ++ +DG Sbjct: 633 NGIEPPRGHVSIKASKDGVLRQVVPDYETLGNNYELLW------EMPNNDG--------- 677 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891 ++ QK+IDQ+ S N D PSGK +L Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLT 720 Query: 892 AWLMGLKTTYYLRSRSA 908 A+ G+KT YY +R Sbjct: 721 AYKFGVKTLYYHNTRDG 737 >gi|161502571|ref|YP_001569683.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863918|gb|ABX20541.1| hypothetical protein SARI_00615 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 761 Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 212/792 (26%), Positives = 341/792 (43%), Gaps = 85/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY + + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-RHVVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS LA+E+GA F + + +GV PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEQGACPWFNETTYAKGVLPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A N W++L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK+IDQ+ S N D PSGK +L A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSAT 909 KT YY +R Sbjct: 727 KTLYYQNTRDGA 738 >gi|188533367|ref|YP_001907164.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia tasmaniensis Et1/99] gi|188028409|emb|CAO96270.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia tasmaniensis Et1/99] Length = 761 Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 194/677 (28%), Positives = 300/677 (44%), Gaps = 55/677 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GLQ+VS V ++ Y+G+ SD+ +I Sbjct: 5 LLVTKRDGRTERIDLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259 S+ LI ++ P+Y + AR + LR++ ++ P Q EM P Y Sbjct: 65 SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 E E M F + + RD F Y ++ L +Y + ++G E Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169 Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L T + FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 QFLYILVAACLFSGYPRTTRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G G IPF K Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFANQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP + V SNLC EI L N S E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDESGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A + D L AVR LD ++D + I AK+ R +G+G++ Sbjct: 464 LSAFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 F L + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ Sbjct: 519 NFAYYLAKHGVRYSDGSANNLTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578 Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PID+ +D A+ N +L W+ L++ VKT G+RNS A+ P+ T + I + Sbjct: 579 PIDTYK-----KDLDAICNTPLQLDWEGLRESVKTHGLRNSTLSALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSG 797 I+P ++ +K++ G Sbjct: 634 GIEPPRGHISIKASKDG 650 >gi|209695248|ref|YP_002263177.1| ribonucleotide-diphosphate reductase subunit alpha [Aliivibrio salmonicida LFI1238] gi|208009200|emb|CAQ79454.1| ribonucleoside-diphosphate reductase 1 alpha chain [Aliivibrio salmonicida LFI1238] Length = 758 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 210/802 (26%), Positives = 347/802 (43%), Gaps = 83/802 (10%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 + P+L + +GT N +++ ++ A L +VS V +++ Y+G+ SD+ Sbjct: 1 MTPQLTVTKRNGTTEKINLEKIHKVITWAAENLDNVSVSQVEMKSHIQFYEGMKTSDIHE 60 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI +E P+Y + AR + LR++ ++ P H Sbjct: 61 TIIKAAADLISEETPDYQYLAARLSVFHLRKKAYGQ-FEPPTLFKH----------VNNL 109 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 IE G + + E + + + + + RD F Y ++ L +YF+ + G+ E Sbjct: 110 IELGKYDKHITEDYTEAEFDLMDQMIDHSRDMDFSYAAVKQLEGKYFVQNRVTGAIYESA 169 Query: 318 QAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L K + + FY+ S F TP + SG R P Q SSC L Sbjct: 170 QFLYILVAACLFAKYPKDTRLDYIQRFYDATSKFKISLPTPIM--SGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G IPF K Sbjct: 228 IECDDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ Sbjct: 288 AVKCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + +LFSP +V +++ + EFE Y YE+ IK I A+ L+ ++ Sbjct: 348 IKGEHISLFSPSDVPGMYEAFFADQVEFERLYLKYEQDT---SIKR-ETIKAIELFSLLM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLTHVNDEEGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A +L AVR LD ++D + + A KS R +G+G++ Sbjct: 464 LSAFNLGAIEKLE-----ELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + ++ E I F+ + ASV LA+E+GA +F + + QG+ Sbjct: 519 NYAYYLAKNGVKYSDGSANGLTHKTFEAIQFYLLKASVNLAKEQGACPAFNETTYAQGIL 578 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PIDS + D + + L W+EL+ +KT G+RNS A+ P+ T + I + Sbjct: 579 PIDS---YKKDIDNIC-SEELHLDWEELRSDIKTHGLRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + +K++ G ++ + + L +D ++ ++ ++ +DG Sbjct: 635 IEPPRGFVSIKASKDG---ILKQVVPDYLNLKDNYE--LLWNIGSNDG------------ 677 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AWL 894 ++ QK++DQA S N D +P+GK + + + A+ Sbjct: 678 --------------YLQLVGIMQKFVDQAISANTNYDPNSQPNGKVPMKLLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATSVEKSTL 916 +GLKT YY +R S + L Sbjct: 724 LGLKTLYYHNTRDGASDSQGDL 745 >gi|146312443|ref|YP_001177517.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter sp. 638] gi|145319319|gb|ABP61466.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Enterobacter sp. 638] Length = 761 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 215/791 (27%), Positives = 342/791 (43%), Gaps = 89/791 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ ++ P H + +E G Sbjct: 65 AAADLISREAPDYQYMAARLAIFHLRKKAYGQ-FEPPALLDH----------VTKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDAHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLEYVKRFYDAVSIFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLYDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + + ++LA AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--IKSLAELEELAV---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N L W+ L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G VV + + + LW ++ +DG Sbjct: 637 PPRGHVSIKASKDGVLRQVVPDYELLKDSYELLW------EMPNNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895 ++ QK+IDQ+ S N D PSGK +L A+ Sbjct: 678 -------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKF 724 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 725 GVKTLYYHNTR 735 >gi|212704402|ref|ZP_03312530.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098] gi|212672123|gb|EEB32606.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098] Length = 756 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 176/624 (28%), Positives = 286/624 (45%), Gaps = 89/624 (14%) Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFM 352 +L RY E P+ F RVA +A +E + E+ A +FY+L++S+ F+ Sbjct: 21 VLQKRYLHKKADGSTETPRDLFWRVASAIAAEEAKYERSPFTAEDLARQFYDLMTSWRFL 80 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+ + QLS+CF+ V D + IF A++ AM+ K GG G ++ +R + Sbjct: 81 PNSPTLMNAASELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPKAS 140 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + FL++ N + QGG R+GA L H D+ EF+ ++ G+ Sbjct: 141 RVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDIVEFIRAKEKEGE- 199 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ N + + + FM+ V ++ ENYE D Sbjct: 200 ---FNNFNLSVGLTEAFMQAVERD--------------------------ENYE-LTDPH 229 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 KV + A ++ ++ ++TG P I F D N +P G + S+N C E L Sbjct: 230 TGKVTGSLRAREIFDLLVCRAWQTGDPGIVFLDRINRDNPTPAQGEIESTNPCGEQPLLP 289 Query: 593 SSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 CNLGSINL F A D+D L + AVR LDNVID + Sbjct: 290 YE----ACNLGSINLACFFVPGHASDEDPAAAGIDWDGLKQVVHLAVRFLDNVIDASRFP 345 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +++ ++ +R IGLG+MGF L L IPY S + +A+ M FI+ +AS LA Sbjct: 346 LDRIDETVRRNRKIGLGVMGFADLLFQLGIPYDSEAGIALAERIMGFINAEGHAASARLA 405 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +ERG + ++ S VFP G P+ RN+ Sbjct: 406 EERGPFPAYAES-----VFPQRGEG-----------------PY------------RNAT 431 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMI 821 IAPT T++ I G S ++P + + ++ + G+ V VN + LK+ L ++ Sbjct: 432 VTTIAPTGTLSIIGGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALKEAGLGTPELM 491 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 + GSI +++ +P ++K+ TA +IDP+W + + Q+ D A S + L + Sbjct: 492 EQV-VEKGSIQSLDALPAAMRKVFVTAMDIDPVWHLRMQAAFQRHTDNAVSKTVNLPHSA 550 Query: 882 GKK-LDFIYRQAWLMGLKTTYYLR 904 ++ + IY A+ G K R Sbjct: 551 TEQDIHDIYWLAYKEGCKGVTVYR 574 >gi|304398197|ref|ZP_07380071.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] gi|304354063|gb|EFM18436.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] Length = 761 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 187/674 (27%), Positives = 309/674 (45%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ LY + + ++ G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LYDQ-VVKMVDMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + L + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH+++E L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ Q+ R + ++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDQSIRKQ-----RVKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D ++LA+ AVR LD ++D + I A++ R +G+G++ + Sbjct: 467 FNLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID Sbjct: 522 YYLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGIMPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ N L W+ L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAISNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSG 797 P ++ +K++ G Sbjct: 637 PPRGHISIKASKDG 650 >gi|308187585|ref|YP_003931716.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] gi|308058095|gb|ADO10267.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] Length = 761 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 185/673 (27%), Positives = 307/673 (45%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P+ LY + + ++ G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LYDQ-VVKMVDMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + L + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH+++E L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDKSIRQ----QRVKAVDLFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D ++LA+ AVR LD ++D + I A++ R +G+G++ + Sbjct: 468 NLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDT 582 Query: 726 IGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +D A+ N L W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 583 YK-----KDLDAISNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 ++ +K++ G Sbjct: 638 PRGHISIKASKDG 650 >gi|225869988|ref|YP_002745935.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. equi 4047] gi|225699392|emb|CAW92839.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. equi 4047] Length = 724 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 189/680 (27%), Positives = 318/680 (46%), Gaps = 80/680 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y++ F+F +G Y Y L ++GS + + F R M + + Sbjct: 84 YQQKFSFLSLMGAMKFYQSYALKTLDGS--QYLEHFEDRAVMNALFLANGDPDLVRDLID 141 Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + S F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 142 QILSGRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R +G+ I G ++ G++P +K+ D+ NQ G+R+GA YL H ++ FL Sbjct: 202 LTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522 D ++ D++ R + IPD+ + +N LFSP D+ +YGK+ +IA Sbjct: 262 DTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAI 318 Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+R IK ISA L++ + + FE+G+P++ F D N R+P G + Sbjct: 319 TEEYDRLVANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVM 377 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI S++ E CNLGSIN +A + +++L I T+V Sbjct: 378 SNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSIN-IAEAMKHAVGFEQL---IATSV 433 Query: 630 RVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LD+V D++C ++EK +NH A+GLG M L HI Y S EAV+ D Sbjct: 434 RALDHVSRASDVSCAPSVEKGNAANH---AVGLGAMNLHGFLATNHIFYDSAEAVDFTDL 490 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELA 737 ++++A AS +LA+E+GA++ F+ S + G + +A + + Sbjct: 491 FFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYG 550 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + S W EL ++ G+ N++ MA+APT +I+ + + S+ P + V+ Sbjct: 551 LRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHL 610 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 V ++ ISD D+ A+E+ P +I Sbjct: 611 GRIYVPAY--------------QISD---------------DNYAYYERGAYEVGPEPII 641 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + QK +DQA SL L++ D+ + + L+ Y A+ + + YY+R R + L Sbjct: 642 NIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR------QDVL 695 Query: 917 KGVDG--KLNAVPVTDPNSS 934 +G + + V +TD N+S Sbjct: 696 EGSEQYEEDTIVALTDTNAS 715 >gi|197285593|ref|YP_002151465.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus mirabilis HI4320] gi|227356094|ref|ZP_03840484.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus mirabilis ATCC 29906] gi|194683080|emb|CAR43610.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus mirabilis HI4320] gi|227163739|gb|EEI48651.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus mirabilis ATCC 29906] Length = 763 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 216/809 (26%), Positives = 343/809 (42%), Gaps = 99/809 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL++VS V + YDG+ +D+ L+ Sbjct: 5 LLVTKRDGHKERIDLDKIHRVITWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ E LY ++ +E G Sbjct: 65 AAADLISGETPDYQYLAARLAVFNLRKKAYG----------QFEPPALY-DHVKHLVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + ++RD F Y ++ L +YF+ I G E Q + Sbjct: 114 KYDRHLLEDYTKEEFEQMDKFIVHQRDMNFSYAAVKQLEGKYFVQNRITGDIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FYN +S+F TP + +G R P Q SSC L Sbjct: 174 VLVAACL-FSRYPKETRMDYIERFYNAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 DDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYVQYEKDKSIRQ----KQVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP + + SNLC EI L + + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A N D ++LA R AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGA--IENLDDLEELA---RLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YYLAKHGVRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + +V N W+ L+K +K G+RNS A+ P+ T + I + I+P Sbjct: 582 TYKKSLDV----LTNEPLHYDWESLRKEIKQYGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G V + ER+ Sbjct: 638 PRGYISIKASKDGILRQV----------------------------VPEYERL------- 662 Query: 845 HATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ-- 891 A+E+ +W + S QK++DQA S N D PSGK ++ + + Sbjct: 663 -KGAYEL--LWQMPSIEGYLQLVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLL 719 Query: 892 -AWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+ G+KT YY +R + L+ V Sbjct: 720 LAYKYGVKTLYYHNTRDGAEDVQGDLEEV 748 >gi|323497714|ref|ZP_08102729.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio sinaloensis DSM 21326] gi|323317190|gb|EGA70186.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio sinaloensis DSM 21326] Length = 760 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 207/793 (26%), Positives = 348/793 (43%), Gaps = 83/793 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ + I+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVAKLIDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L + RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K ++ + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAKYPQETRLSYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 291 CCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEG 350 Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + + EFE Y YE + + A+ ++ ++ Sbjct: 351 GNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSVKK----ETVKAIEMFSILMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ + Sbjct: 467 FNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PID Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + ++ E A++ WD L++ + T G+RNS A+ P+ T + I + I+P Sbjct: 582 TYKKDVDLVCEEALH----YDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + VK++ G ++ + K +D ++ ++ ++ +DG + Sbjct: 638 PRGYVSVKASKDG---ILKQVVPEFTKYKDNYE--LLWNIGSNDGY-------------L 679 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGL 897 H QK++DQA S N D SG KKL A+ G+ Sbjct: 680 HLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGV 726 Query: 898 KTTYYLRSRSATS 910 KT YY +R S Sbjct: 727 KTLYYHNTRDGAS 739 >gi|16082440|ref|NP_394926.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma acidophilum DSM 1728] gi|10640815|emb|CAC12593.1| ribonucleotide reductase [Thermoplasma acidophilum] Length = 770 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 172/574 (29%), Positives = 281/574 (48%), Gaps = 80/574 (13%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F ++SS F+ ++PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG G Sbjct: 223 FEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTG 282 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + T G + G + F+K+ + T + QGGKR+GA L H D+ E Sbjct: 283 FSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIME 342 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ L K++ + + + N + + D F ++ D+ DL + K Sbjct: 343 FI-LSKDS--ENKVLSNFNISVGVTDDFFDKLDN---------DDYVDLVNPRTK----- 385 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 K+ ++I A +W ++ ++T P + F D N ++P ++VG + S Sbjct: 386 -------------KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIES 432 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINC 640 +N C E L CNLGSINL + + + D+D+L T+ TA R LD+VID N Sbjct: 433 TNPCGEQPLLPYES----CNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANK 488 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+ KK R IGLG+MGF L L IPY S EA+EI ++ M FI+ + AS Sbjct: 489 FPVEQIKKVTRMTRKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQA 548 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERG + ++ GS W++ + I MRN Sbjct: 549 LAEERGVFPAWYGSEWEK-----------------------------------EGIKMRN 573 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819 S IAPT TI+ I G S SI+P + +V+ ++G + VN + ++ ++ E Sbjct: 574 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEE 633 Query: 820 MISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875 ++ + GN+E +I +++KKI TA EIDP W + + Q++ D ++++N+ Sbjct: 634 LMRQV----AETGNLENVKINEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINM 689 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 D + + + YR A + K R +S T Sbjct: 690 RSD-ATREDIARAYRMAKDLHCKGITVYRDKSKT 722 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 16/105 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ +KI+ AI KA ++V+ + + L ++ V RL + Sbjct: 6 EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDA-------EQLADKVVARLKDKERP 58 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129 + +E+IQD VE LM S + + Y+LYRE+R +R Sbjct: 59 S----VEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIR 99 >gi|315634376|ref|ZP_07889663.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter segnis ATCC 33393] gi|315476966|gb|EFU67711.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter segnis ATCC 33393] Length = 756 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 206/791 (26%), Positives = 338/791 (42%), Gaps = 85/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGTL N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ H + LY ++ + + G Sbjct: 65 AAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L + + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDHALLDDYTREEWDEMDSFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 352 DITLFSPSDVKGLYEAFFADQDKFEELYVQYEQDPSIRK----RTVKAVELFSLLMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L N E A+C L + Sbjct: 408 STGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEQGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + D+L + AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 468 NL-----GKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDT 582 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + D L + W+ L++ ++ G+RNS A+ P+ T + I + I+P Sbjct: 583 ---YKKDIDSLT-SEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPP 638 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ VK++ G V N + + LWD IP + + Sbjct: 639 RGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPGNDGYL 679 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGL 897 H QK++DQA S N D E + + + A+ GL Sbjct: 680 HLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGL 726 Query: 898 KTTYYLRSRSA 908 KT YY +R Sbjct: 727 KTLYYQNTRDG 737 >gi|212712303|ref|ZP_03320431.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM 30120] gi|212685049|gb|EEB44577.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM 30120] Length = 763 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 213/803 (26%), Positives = 344/803 (42%), Gaps = 87/803 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL +VS V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ ++ P+ H + +E G Sbjct: 65 AAADLITGETPDYQYLAARLAIFNLRKKAYGQ-FEPPKLYAHVK----------HLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + D + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYTEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + + FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACLFSHYPQATRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 292 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQ 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTM 552 TLFSP +V L+D + EFE Y YE+ + RK + AV L+ M+ Sbjct: 352 NITLFSPSDVPGLYDAFFADQDEFERLYVQYEQD------ETIRKSSVKAVELFSLMMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP + V SNLC EI L N + E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNVNDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+L AVR LD ++D + I AKK + R +G+G++ + Sbjct: 466 AFNLGAIES-----LDELEELAILAVRALDALLDYQDYPIPAAKKGSMGRRTLGIGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV PI Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ D+L N W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 581 DT---YKRELDKLT-NEPLHYDWEALRAEIKQYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G L+Q ++ D + G+ + ++P + Sbjct: 637 PPRGYISIKASKDGI-----------LRQ-------VVPDYENLKGAYELLWQMPSNSGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMG 896 + QK+IDQ+ S N D P+GK ++ + + A+ G Sbjct: 679 LQLVGI-------------MQKFIDQSISSNTNYDPTRFPNGKVPMNQLLKDLLLAYKFG 725 Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919 +KT YY +R + L+ V Sbjct: 726 VKTLYYHNTRDGAEDVQGDLEEV 748 >gi|218887121|ref|YP_002436442.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758075|gb|ACL08974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 770 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 177/636 (27%), Positives = 290/636 (45%), Gaps = 106/636 (16%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHF 351 +L RY+ +G E +A F R+A +A +E + +K A EFY+L++ + F Sbjct: 31 VLAKRYYRKGPDGQPYEDARALFWRIAGAIAAEEGKYKKSPYKADALAREFYDLMTGWKF 90 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 91 LPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPKE 150 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + FL++ N + QGG R+GA L H D+ EF+ ++ G+ Sbjct: 151 ARVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIIEFIRAKERDGE 210 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 ++ N + + + FMK V + + L +P Sbjct: 211 ----FNNFNLSVGLTEAFMKAVEADEEYDLVAPHT------------------------- 241 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 G+++ ++ A ++ ++ +E+G P I F D N +P G + S+N C E L Sbjct: 242 GQVR--ERLKARKVFEMLVQKAWESGDPGIVFLDRINRDNPTPKQGEIESTNPCGEQPLL 299 Query: 592 SSSEETAVCNLGSINLLAHFA----------------NNQFDYDKLASTIRTAVRVLDNV 635 CNLGSINL A F D+ +L I VR LDNV Sbjct: 300 PYE----ACNLGSINLSAFFVPGTATAREGGLPHPSPEKAIDWAELKRVIHLGVRFLDNV 355 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID + +E+ ++ H +R IGLG+MG+ L+ L IPY S EA+ + + M+F+ Sbjct: 356 IDASRFPLERITETVHRNRKIGLGVMGWADLLYQLGIPYDSQEAIGLGERMMQFVQDEGR 415 Query: 696 SASVELAQERGAYSSFKGSLW---DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 +AS LA+ERG + +F S + D G + Sbjct: 416 AASKVLAKERGPFPAFAESTFAERDMGPY------------------------------- 444 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELK 811 RN+ IAPT T++ I G S I+P + + ++ M G+ V VN L+ Sbjct: 445 ------RNATVTTIAPTGTLSIIAGCSSGIEPLFALCFSRNVMDGERLVEVNPHFEAALR 498 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + ++ + GSI ++ +P+DL++++ TA +I P+W + + QK+ D A Sbjct: 499 DTGSHSKKLMEAVA-EKGSIQAMDHLPEDLRRVYVTAMDIAPVWHLRMQAAFQKYTDNAV 557 Query: 872 SLNLYLDEPSGKKLD---FIYRQAWLMGLKTTYYLR 904 S + L P+ +D IY A+ G K R Sbjct: 558 SKTVNL--PNSASIDDIRAIYWMAYEQGCKGVTVYR 591 >gi|251792453|ref|YP_003007179.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533846|gb|ACS97092.1| ribonucleoside-diphosphate reductase, alpha subunit [Aggregatibacter aphrophilus NJ8700] Length = 756 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 205/792 (25%), Positives = 337/792 (42%), Gaps = 85/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG L N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGKLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ H + LY ++ + + G Sbjct: 65 AAADLISKDTPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDHALLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++++ +FE Y YE+ + R + AV L+ ++ Sbjct: 352 DITLFSPSDVPGLYEVFFADQDKFEELYVQYEQDPSIRK----RAVKAVELFSLLMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L N E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEEGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + D+L + AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 468 NL-----GKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDT 582 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + D L + W+ L++ ++ G+RNS A+ P+ T + I + I+P Sbjct: 583 ---YKKDIDSLT-SEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPP 638 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ VK++ G V N + + LWD IP + + Sbjct: 639 RGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPGNDGYL 679 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGL 897 H QK++DQA S N D E + + + A+ GL Sbjct: 680 HLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGL 726 Query: 898 KTTYYLRSRSAT 909 KT YY +R Sbjct: 727 KTLYYQNTRDGA 738 >gi|320161749|ref|YP_004174974.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1] gi|319995603|dbj|BAJ64374.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1] Length = 868 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 184/660 (27%), Positives = 316/660 (47%), Gaps = 68/660 (10%) Query: 299 QILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-----EKEKRAVEFYNLLSSFHFM 352 Q+L RY + +G+ E F RVA +A E + RA EFY LL+S F Sbjct: 35 QVLIRRYVRRNDDGTPAESVDEMFWRVAYNIAKVEVSFGNPDVMTRAREFYILLTSKKFF 94 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDL----YGIFGALQENAMLAKYSGGLGNDWTPVR 408 ++PT +GT QL++CF+ + DD+ GIF L++ A++ + GG G ++ +R Sbjct: 95 PNSPTFTGAGTPLGQLAACFVLPIVDDMGRDSMGIFQTLRDAALIQQTGGGNGFSFSRLR 154 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G + ++G++ G + FL+V + + QGG R+GA L H D+EEF+ + Sbjct: 155 PKGTVVKSSSGQATGPVGFLRVYDHAFGEIAQGGTRRGANMGVLRVDHPDIEEFITCKT- 213 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D + N + I D FM+ V ++A W L PD + D + F E E++ Sbjct: 214 ---DENAITNFNISVGITDAFMRAVKEDAEWELRFPD----VTDPRYRTFRGTLEQAEQE 266 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ ++K+ A L+ K++ G P + F D N +P H+ + ++N C E Sbjct: 267 GI--PIRTYKKVRARDLFNKIVKQAHHNGEPGVLFLDAANRSNPVPHLYQLEATNPCGEQ 324 Query: 589 TLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT--IEK 645 L C LGS+NL H +N D++ L ++ + LD+V++ N + + + Sbjct: 325 YLGPYEN----CCLGSVNLAQHLGDNGTVDWEGLRQSVVLSTIFLDDVVEANAYVPAVPQ 380 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 +++ R IGLG+MG ++ I Y SPE E A + MEFI +HA+ S+ELAQ+R Sbjct: 381 LREAAMRARRIGLGIMGLADLMYHCGIRYGSPEGQEFAAQVMEFIRYHAMQTSIELAQQR 440 Query: 706 GAYSSFKGSLWDQGVF---PIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRN 760 GA+ + GS++D P SI + D R P WD + + ++ G+RN Sbjct: 441 GAFPAIHGSIYDPENLKWAPPQSI--VPYTHD------YGRPPIDWDIITEGIRKHGIRN 492 Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVK--SNMSGDFTVVNSFLVNEL------- 810 + IAPT TIA + G +P + Y++ ++ D ++ + E Sbjct: 493 AAQTTIAPTGTIATVAGCEGYGCEPVFALAYIRHVNDNGKDLQLIYASPAFEKAIARAGI 552 Query: 811 ---KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 K++++ ++ M +G+ +I+ +P+ ++ + + +I + + Q ++ Sbjct: 553 EAEKRQEILEQIM------REGTCQHIKDLPEAIRNVFVVSADITAEEHVRMQAALQAFV 606 Query: 868 DQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGK 922 D SL+ ++ P G + + Y AW +G K T Y SR +E TLK + K Sbjct: 607 D--NSLSKTINFPEGATEEDVATAYMLAWELGCKGITVYVTGSREKVVLE--TLKTAEKK 662 >gi|326781923|ref|YP_004322325.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] gi|310003113|gb|ADO97511.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] Length = 765 Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 180/675 (26%), Positives = 316/675 (46%), Gaps = 57/675 (8%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K+ DG + + +++ ++VEEAC GL VS+ V ++ YDG++ ++++ LI + Sbjct: 6 KVKKRDGRIEPLDLEKMHLMVEEACQGLAGVSASQVEMKSGIQFYDGITTAEIQEILIKA 65 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF-----CRY 259 + LI+ + PNY V AR LL LR+ + + + P TH C+ E + +Y Sbjct: 66 ASDLIDLDHPNYQFVAARLLLFSLRKSLYGKMRELPHLETHIN-DCVGKEVYDSDIYTKY 124 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 +E ++ + + + + RDF F Y GL+ + D+Y + G E P Sbjct: 125 SKEEIEK--------------VNSYIDHNRDFLFTYAGLRQVVDKYLVQDRSGGGVYETP 170 Query: 318 QAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372 Q +M +A+ + +E KE R +Y+ +S TP + +G R P Q +SC Sbjct: 171 QFMYMMIALTI-FREYPKETRLSYVKRYYDAISKHRINIPTPIM--AGVRTPLRQFASCV 227 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L V D L IF + G+G + +RG+ + I G + GV+PFLK Sbjct: 228 LVDVDDTLDSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFE 287 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R Sbjct: 288 STVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYER 347 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550 + +LFSP +V L+D +G + F+ Y +YE + + RK + A L +L Sbjct: 348 FIADGEISLFSPHDVPGLYDAFGTDAFDARYVDYE-----SDQSIPRKTVRAQELILNLL 402 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 ETG ++ D CN S + V SNLC EITL + E A+C L Sbjct: 403 KERAETGRIYLMNIDHCNSHSSFKD--KVEMSNLCQEITLPTYPLQHIDDEGAEIALCIL 460 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +IN+ ++ ++L +VR L+ +ID + ++ A+++ R++G+G +G Sbjct: 461 SAINVGKVRSD-----EELEELCDLSVRGLEELIDYQEYPVKAAERATKARRSLGIGFIG 515 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L L Y S EA + E ++ + +S ++A+E+G + F + + G+ P Sbjct: 516 LAHYLAKLGYKYDSQEAWDAVHGLSESFQYYLLKSSNQIAKEKGWCADFGRTKYSDGILP 575 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + DE+ + W+ L+ + G+R+S A P+ + + + + I Sbjct: 576 IDT---YKKDVDEITTEGLAH-DWESLRASILEHGLRHSTLSAQMPSESSSVVSNATNGI 631 Query: 783 DPSYQNLYVKSNMSG 797 +P L +K + G Sbjct: 632 EPPRDYLSIKKSKKG 646 >gi|117620066|ref|YP_856856.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561473|gb|ABK38421.1| ribonucleoside-diphosphate reductase, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 767 Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 183/657 (27%), Positives = 298/657 (45%), Gaps = 47/657 (7%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219 ++ +++ A GL +VS V +++ YDG+ +D+ +I ++ LI E+ P+Y + Sbjct: 31 KIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIKAAADLISEQSPDYQYM 90 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ ++ P LY ++ + ++ G + L E + Sbjct: 91 AARLAIFHLRKKAYGQ-FEPPH---------LY-QHVAKLVDMGKYDKHLLEDYSQAEFE 139 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 L L + RD F Y ++ L +Y + + G E PQ ++ VA L + K+ Sbjct: 140 ELNQHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLYILVAACL-FSKYPKDT 198 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R FY+ +S+F TP + SG R P Q SSC L D L I Sbjct: 199 RLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECDDSLDSINATASAIVR 256 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +RGLG+ I G G IPF K +QGG R GA + Sbjct: 257 YVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATLFY 316 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH +VE L L+ N G + R M+ I L +R+ + TLFSP + L+D Sbjct: 317 PLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDAPGLYD 376 Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + +FE Y YE+ + + + AV L+ M+ TG +I D CN Sbjct: 377 AFFADQDKFEALYVKYEQDPSIRK----KTLKAVDLFSLMMQERAGTGRIYIQNVDHCNT 432 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V V SNLC EI L + E A+C L + NL A D ++ Sbjct: 433 HSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNLGA--IEKLEDLEE 490 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 +A AVR LD ++D + ++ A K + R +G+G++ + L Y+ + Sbjct: 491 MAD---LAVRALDALLDYQDYPLKAAMKGSMNRRTLGIGVINYAYYLAKNGARYSDGSGL 547 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E I ++ + ASV+LA+E G +F + + QG+ PID+ + D L N Sbjct: 548 ALTHRTFEAIQYYLLKASVQLAREFGPCPAFNETTYAQGILPIDT---YKKDLDNLC-NE 603 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 L W+ L++ ++T+G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 604 PLHLDWEALREEIRTVGLRNSTLTALMPSETSSQISNATNGIEPPRGLVSVKASKDG 660 >gi|317048918|ref|YP_004116566.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp. At-9b] gi|316950535|gb|ADU70010.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. At-9b] Length = 761 Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 187/672 (27%), Positives = 300/672 (44%), Gaps = 45/672 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY + + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALYDQ-VVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + + + RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDRHLLEDYSKEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACLFSGYPRATRMDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTTYEKDDSIRK----QRVKAVELFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPSIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A ++ D ++LA AVR LD ++D + I AK+ R +G+G++ F Sbjct: 468 NLGA--IDSLDDLEELAI---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ P D+ Sbjct: 523 YLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPTDT 582 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + D + N L W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 583 ---YKKDLDSIC-NEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPP 638 Query: 786 YQNLYVKSNMSG 797 ++ +K++ G Sbjct: 639 RGHISIKASKDG 650 >gi|260768283|ref|ZP_05877217.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio furnissii CIP 102972] gi|260616313|gb|EEX41498.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio furnissii CIP 102972] gi|315179990|gb|ADT86904.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio furnissii NCTC 11218] Length = 760 Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 214/793 (26%), Positives = 336/793 (42%), Gaps = 87/793 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLDH----------VSAMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E + L + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREEFELLNGFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAKYPKATRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEG 350 Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + + EFE Y YE IK R + AV ++ ++ Sbjct: 351 GNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLVNVEDDSGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+++LA + VR LD ++D + + A+KS R +G+G++ + Sbjct: 467 FNLGA--IEKLDDFEELAELV---VRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E + ++ + ASV LA+E+G +F + + +G+ PID Sbjct: 522 YYLARHGVKYSDGSANGLTHRTFEAMQYYLLKASVNLAKEQGKCPAFDETNYAKGLLPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D +L + W+ L++ + G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDLLCDEPLHYDWNALREEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + VK++ G VV F + LW ++ +DG Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRLKENYELLW------NIGSNDGY------------ 678 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLM 895 +H QK++DQA S N D SG KKL A+ Sbjct: 679 -LHLVGI-------------MQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKF 724 Query: 896 GLKTTYYLRSRSA 908 G+KT YY +R Sbjct: 725 GVKTLYYHNTRDG 737 >gi|326782932|ref|YP_004323330.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] gi|310004191|gb|ADO98585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] Length = 772 Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 199/699 (28%), Positives = 321/699 (45%), Gaps = 49/699 (7%) Query: 139 APIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197 +P PK + + +G + ++ +VE AC GL VS V + +DG+ +D Sbjct: 7 SPRTPKPINVTKREGEKTPLDLNKVHKMVELACEGLAGVSESAVEINSGLQFFDGIKTAD 66 Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 ++ LI S+ LI + PNY V AR LL LR+ V H +C Sbjct: 67 IQEILIRSANDLISLDHPNYQYVAARLLLFGLRKAVYNGHPDGHPPLLEHVKKC------ 120 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRI 314 I++GV + + + L + + ++RD+ F Y G++ + D+Y + +G Sbjct: 121 ---IDKGVYDSSIVSKYTEEEWEKLNSYIDHDRDYLFTYAGIRQVVDKYLVQDRSSGEVY 177 Query: 315 EMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLS 369 E PQ +M VA+ L ++ +K R ++Y+ +S TP + G R P Q + Sbjct: 178 ETPQFMYMMVAITL-FQDDDKFYRLEYVRKYYDAISKHRLNIPTPIM--GGVRTPLRQFA 234 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L V D L IF + G+G + +RG+ + I + GV+PFLK Sbjct: 235 SCVLVDVDDTLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRSGEVQHTGVVPFLK 294 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 T Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF Sbjct: 295 KFESTVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISQLF 354 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 +R + +LFSP +V L++ +G EF+ Y YE DR + + + A L Sbjct: 355 YQRFIDDRSISLFSPHDVPGLYEAFGTPEFDDLYVEYEN--DRAIPR--KTMKAQKLILD 410 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCN 601 +L ETG +I D CN S + V+ SNLC EITL + S E A+C Sbjct: 411 LLKERAETGRLYIMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPIQHIDGSGEIALCI 468 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L +IN + N + +L AVR LD +ID + + AK+S R++G+G + Sbjct: 469 LSAIN-VGKLKNLE----ELDELCELAVRGLDALIDYQQYPVNAAKQSTLNRRSLGIGYI 523 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L Y S +A ++ + E + ++AS +A E+G F + + G+ Sbjct: 524 GLAHYLAKNGAKYDSQKAFDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGIL 583 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID+ +EV DE+ N S W+ L+ R+K G+R+S A P+ + + + + Sbjct: 584 PIDTYK--SEV-DEIVPNDLS-CDWEYLRGRIKEYGLRHSTLSAQMPSESSSVVSNATNG 639 Query: 782 IDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRD--LWD 817 I+P L VK + G +V S+ N LK LWD Sbjct: 640 IEPPRDYLSVKKSKKGPLKQIVPSY--NSLKANYTLLWD 676 >gi|319944854|ref|ZP_08019116.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] gi|319741424|gb|EFV93849.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] Length = 727 Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 203/667 (30%), Positives = 312/667 (46%), Gaps = 80/667 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y R F F +LG Y Y L NG R +E + + VA+ LA + E+ A+ Sbjct: 103 DEAYSRKFRFPTFLGAFKYYTSYTLKTRNGQRYLERFEDRVVMVALTLARGD---EQLAL 159 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 F + + F +TPT N+G + +L SCFL V D++ I A+ L+K GG Sbjct: 160 RFMDEIIGGRFQPATPTFLNAGKKSRGELISCFLLRVEDNMESIGRAINSALQLSKRGGG 219 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R LGA I G +S GV+P +K+ D+ NQ G R+GA YL H D+ Sbjct: 220 VALMLTNLRELGAPIKGIENQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 279 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +NA LFSP D+ +YGK F Sbjct: 280 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNADMYLFSP---HDVEKVYGKAFS 336 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 EI+ E Y+ I+ +KI+A ++ + + FE+G+P+I F+D N +P + G Sbjct: 337 EISVTEKYDEMVGDKRIRK-KKINAREFFQTLAEIQFESGYPYIMFEDTVNAANPIE--G 393 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI +N +S CNLGS+N+ A D L +T+ Sbjct: 394 RITMSNLCSEILQVNEASTFNDDLSYRHLGTDISCNLGSLNIAA-----AMDGPDLGATV 448 Query: 626 RTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 AVR L V +++ ++ ++ N A+GLG M L I Y SPE ++ Sbjct: 449 EAAVRALTAVSEMSAIDSVPSVRRGNDEAHAVGLGQMNLHGFLARERIHYGSPEGIDFTR 508 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA- 737 +++HA+ AS LAQE+G+ + F S + G F D + VR+ A Sbjct: 509 VYFATVAYHALRASNLLAQEKGSTFVGFDRSKYADGSFFEKYVTRDWLPETETVRELFAR 568 Query: 738 MNRT--SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794 M+ T +R W L++ V G+ N N A+ PT +I+ I + SI P + + K + Sbjct: 569 MDVTLPTREDWAALREAVMKHGLYNRNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKES 628 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G F+ N+ N+E D A+EI P Sbjct: 629 KIGRVYYPAPFMTND-----------------------NLEYYRD--------AYEIGPE 657 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ---AWLMGLKTTYYLRSRSATSV 911 LI++ + + +DQ SL L+ PS I R AW G+KT YY+R R A + Sbjct: 658 PLIDTYAAATEHVDQGLSLTLFF--PSDATTRDINRAQIYAWKKGIKTIYYVRLRQAV-L 714 Query: 912 EKSTLKG 918 E + ++G Sbjct: 715 EGTEVQG 721 >gi|254507982|ref|ZP_05120110.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] gi|219549090|gb|EED26087.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] Length = 760 Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 214/796 (26%), Positives = 342/796 (42%), Gaps = 89/796 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKESIDLEKIHRVIAWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ + I+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVAKLIDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L + + RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSVKK----ETVKAIEMFSILMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ + Sbjct: 466 AFNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + ++ + ASV LA+E+G SF + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L + WD L++ + T G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDVDLVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKENYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894 +H QK++DQA S N D SG KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATS 910 G+KT YY +R S Sbjct: 724 YGVKTLYYHNTRDGAS 739 >gi|289805311|ref|ZP_06535940.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 664 Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 187/674 (27%), Positives = 298/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVVACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSG 797 P + +K++ G Sbjct: 637 PPRGYVSIKASKDG 650 >gi|91227185|ref|ZP_01261644.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 12G01] gi|269967068|ref|ZP_06181136.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 40B] gi|91188713|gb|EAS75001.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 12G01] gi|269828327|gb|EEZ82593.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 40B] Length = 760 Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 216/799 (27%), Positives = 345/799 (43%), Gaps = 89/799 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVSRLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 291 CCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +EFE Y YE IK + A+ ++ ++ Sbjct: 351 GNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ F Sbjct: 467 FNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E + ++ + ASV LA+E+G SF + + +G+ PID Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFDETNYAKGLLPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D +L + WD L+K + G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDIDLICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + VK++ G VV F ELK D ++ ++ ++ +DG Sbjct: 637 PPRGYVSVKASKDGILKQVVPEF--TELK--DSYE--LLWNIGSNDGY------------ 678 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAWL 894 +H QK++DQA S N D PS KKL A+ Sbjct: 679 -LHLVGI-------------MQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATSVEK 913 G+KT YY +R E+ Sbjct: 724 FGVKTLYYHNTRDGAKDEQ 742 >gi|325578587|ref|ZP_08148687.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159823|gb|EGC71953.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus parainfluenzae ATCC 33392] Length = 756 Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 210/795 (26%), Positives = 342/795 (43%), Gaps = 91/795 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGTL N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P+ H + +Y + Sbjct: 65 AAADLISKDTPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKY-----DPA 118 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + A E + D + + RD F Y ++ L +Y + + G E Q + Sbjct: 119 LLADYTREEWDEMD-----GFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I +A + KY G+G + +R LG+ I G G IPF K Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSA 288 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ Sbjct: 289 VKSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLI 348 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 + A TLFSP +V L++ + +FE Y YE+ + + R + AV L+ ++ Sbjct: 349 KGADITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG +I D CN SP V V SNLC EI L + + E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL D D+L + AVR LD ++D + + AK+S+ R++G+G++ Sbjct: 465 SAFNL-----GKLDDLDELENLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A ++ + E I ++ + AS+ LA+E GA F + + +G+ P Sbjct: 520 YAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILP 579 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ D L W+ L++ +K G+RNS A+ P+ T + I + I Sbjct: 580 IDT---YKNDIDSLT-QEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDL 841 +P ++ +K++ G V N + LWD IP + Sbjct: 636 EPPRGHVSIKASKDGILKQVVPDYENLSDNYELLWD-------------------IPSND 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWL 894 +H QK++DQA S N D E + + + A+ Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSRSAT 909 GLKT YY +R Sbjct: 724 YGLKTLYYQNTRDGA 738 >gi|91775576|ref|YP_545332.1| ribonucleotide-diphosphate reductase subunit alpha [Methylobacillus flagellatus KT] gi|91709563|gb|ABE49491.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Methylobacillus flagellatus KT] Length = 774 Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 213/805 (26%), Positives = 343/805 (42%), Gaps = 88/805 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K DG N ++ +++ A GL +VS V +++ YDG+ + +I Sbjct: 22 MKATKRDGRQEPINLDKIHRVIDWAAQGLDNVSVSQVELKSHIQFYDGIRTDVIHETIIK 81 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +E P+Y + AR + LR+ + ++ P H + E G Sbjct: 82 SAADLISEETPDYQYLAARLSIFHLRK-IAYGQFEPPHLFDH----------VTKLTEMG 130 Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K L S +FD L + L + RD F Y ++ L +Y + + E PQ Sbjct: 131 KYDKHILQDYSREEFDA--LNDHLDHWRDMNFSYAAVKQLEGKYLVQNRVTKKIYESPQF 188 Query: 320 FFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M VAM L + K + FY+ +S+F TP + SG R P Q SSC L Sbjct: 189 LYMLVAMCLFARYEGKTRLEYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 246 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G + G +PF K+ Sbjct: 247 CDDSLDSINATTSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAQHTGCLPFYKLFQAAV 306 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R ++ I L +R+ + Sbjct: 307 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQINRLLYQRLIK 366 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + EFE Y YE + R + AV L+ ++ Sbjct: 367 GGNITLFSPHDVPGLYDAFFADQDEFERLYTQYEANDSLRK----RIVPAVDLFSLLMQE 422 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP + V SNLC EI L N + E A+C L Sbjct: 423 RAGTGRIYIQNVDHCNTHSPFNPRLAPVRQSNLCMEIALPTRPLNDINDENGEIALCTLS 482 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+L VR LD ++D + ++ A + R++G+G++ + Sbjct: 483 AFNLGALES-----LDELEGLADLVVRALDALLDYQDYPVKAAFNATQKRRSLGVGVINY 537 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y A+ + + E I ++ + ASV+LA+E G +F + + QG+ PI Sbjct: 538 AYYLAKNGTGYTDDAALGLTHRTFEAIQYYLLKASVQLAREFGPCGAFNETTYSQGILPI 597 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + + A+ +L W++L+K + G+RNS A+ P+ T + I + I+ Sbjct: 598 DTYKKDLDAVCQEAL----QLDWEQLRKDIVAHGLRNSTLTALMPSETSSQIANATNGIE 653 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK + G V + IER+ + + Sbjct: 654 PPRGLVSVKQSKDGILRQV----------------------------VPEIERLRNQYQL 685 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896 + + + L+ QK++DQ+ S N D + K+L QA+ +G Sbjct: 686 LWSLPNNDGYLKLV---GIMQKFVDQSISSNTNYDPKRFEGGKVPMKQLLKDLLQAYKLG 742 Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921 +KT YY +R S E G DG Sbjct: 743 IKTLYYHNTRDGAS-EGGAEAGDDG 766 >gi|25010528|ref|NP_734923.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae NEM316] gi|23094881|emb|CAD46099.1| Unknown [Streptococcus agalactiae NEM316] Length = 722 Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y + FAF ++G Y+ Y L +R + + + RV M EK A + + Sbjct: 84 YAKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522 ++ D++ R ++ IPD+ + N LFSP D+ +YGK +I+ Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319 Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E YE +I K F ISA L++ + + FE+G+P+I F+D N ++P + G + Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N++S+ CNLGSIN +A + D++KL I ++ Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + + KK N + A+GLG M L HI Y S EA++ D Sbjct: 434 RALDRVSRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736 ++++A AS LA+E+G + F S + G + LLA E Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + S+ W +L + +K IG+ N++ +A+APT +I+ + + S+ P Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850 +V+ ++ R +G++G + +P D+ A+E Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + P +I A+ QK IDQA SL L++ D+ + + L+ Y QA+ + YY+R R Sbjct: 635 VGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691 >gi|205353393|ref|YP_002227194.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273174|emb|CAR38136.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628484|gb|EGE34827.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 761 Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 211/793 (26%), Positives = 338/793 (42%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P HH + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTDEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D + +N W +L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G L+Q ++ D ++ + + +P++ Sbjct: 637 PPRGYVSIKASKDG-----------ILRQ-------VVPDYEHLKDAYELLWEMPNNEGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896 + QK+IDQ+ S N D PSGK +L A+ G Sbjct: 679 LQLVGI-------------MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 VKTLYYQNTRDGA 738 >gi|77414135|ref|ZP_00790301.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] gi|77159805|gb|EAO70950.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] Length = 722 Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 186/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y + F F ++G Y+ Y L +R + + + RV M EK A + + Sbjct: 84 YAKKFTFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522 ++ D++ R ++ IPD+ + N LFSP D+ +YGK +I+ Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319 Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E YE +I K F ISA L++ + + FE+G+P+I F+D N ++P + G + Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ S+ CNLGSIN +A + D++KL I ++ Sbjct: 378 SNLCSEIAQVNTGSQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + + KKSN + A+GLG+M L HI Y S EA++ D Sbjct: 434 RALDRVSRTSDLDSAPSIKKSNAANHAVGLGVMNLHGFLATNHIYYDSQEAIDFTDCFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736 ++++A AS LA+E+G + F S + G + LLA E Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + S+ W +L + +K IG+ N++ +A+APT +I+ + + S+ P Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850 +V+ ++ R +G++G + +P D+ A+E Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + P +I A+ QK +DQA SL L++ D+ + + L+ Y QA+ + YY+R R Sbjct: 635 VGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691 >gi|237747537|ref|ZP_04578017.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter formigenes OXCC13] gi|229378899|gb|EEO28990.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter formigenes OXCC13] Length = 761 Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 215/801 (26%), Positives = 344/801 (42%), Gaps = 85/801 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GL +VS V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGRKERIDLDKIHRVIDWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ E LY ++ R + G Sbjct: 65 SAADLISGETPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVKRLVGMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDSHLLEDYSPAEFAEMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACLFSKYPKQTRLDYIRRFYEAVSTFRVSLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINVTASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA Y WH++VE L L+ N G D R ++ + L KR+ Sbjct: 292 CSQGGVRGGAATVYYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNRLMYKRLIAGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE AD G I+ + + AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYSLYE--AD-GSIRK-KTVKAVELFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D+L AVR LD ++D + + AK R +G+G++ F Sbjct: 468 NLGAIDS-----LDELEELATLAVRALDALLDYQDYPVLAAKNGAMGRRTLGIGVINFAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +GV P+D+ Sbjct: 523 YLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFGETSYAKGVLPVDT 582 Query: 726 IGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +D A N W+ L++ ++ G+RNS A+ P+ T + I + I+P Sbjct: 583 YK-----KDLDAFCNEPLHYDWEALRENIRQYGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ +K++ G ++ + + + +D ++ ++ DL ++G Sbjct: 638 PRGHISIKASKDG---ILRQVVPDYEQLKDAYE--LLWDLPDNNG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897 ++ QK++DQA S N D PSGK +L A+ +G+ Sbjct: 678 -----------YLQLVGVMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLMAYKLGV 726 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY +R + L+ Sbjct: 727 KTLYYQNTRDGAEDSQEDLQA 747 >gi|77411320|ref|ZP_00787669.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] gi|77162656|gb|EAO73618.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] Length = 722 Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 186/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y + FAF ++G Y+ Y L +R + + + RV M EK A + + Sbjct: 84 YAKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522 ++ D++ R ++ IPD+ + N LFSP D+ +YGK +I+ Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319 Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E YE +I K F ISA L++ + + FE+G+P+I F+D N ++P + G + Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N++S+ CNLGSIN +A + D++KL I ++ Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD + + + KK N + A+GLG M L HI Y S EA++ D Sbjct: 434 RALDRISRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736 ++++A AS LA+E+G + F S + G + LLA E Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + S+ W +L + +K IG+ N++ +A+APT +I+ + + S+ P Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850 +V+ ++ R +G++G + +P D+ A+E Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + P +I A+ QK IDQA SL L++ D+ + + L+ Y QA+ + YY+R R Sbjct: 635 VGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691 >gi|270307983|ref|YP_003330041.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] gi|270153875|gb|ACZ61713.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] Length = 599 Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 183/630 (29%), Positives = 296/630 (46%), Gaps = 95/630 (15%) Query: 299 QILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFHF 351 ++L RY +G IE P+ F RVA +A E + A EFY + F Sbjct: 22 RVLEKRYLKKDADGRVIETPEDMFHRVARVVASAEYKYAPGADISRIEEEFYQAMFRLEF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ +R G Sbjct: 82 LPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + G + + + A V QGG R+G A L+ H D+ F+ + GD Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISCK---GD 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 T+ + D FM +V + + +P Sbjct: 199 PNALTNFYISVVVTRD-FMTKVRNGEDYDIINPHT------------------------- 232 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V ++++A ++ +++ ++TG P + F D N +P +G + + C E TL Sbjct: 233 GE--VVQRLNAACVFDRIVDQAWKTGDPGLVFIDRINDDNPTPLLGRIKHVSGCGEQTLL 290 Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 CNLGSI+L + DY+KL T++ A+R LDNVID+N + + Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K+ +R +GLG+MGF L L+ IPY S EA+ AD+ MEFI + AS +LA+ RG+ Sbjct: 347 KATLRNRKVGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKLAEVRGS 406 Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + +++GS++D G P MRN+ C +I Sbjct: 407 FPAYEGSIYDVPGGRP-----------------------------------MRNATCTSI 431 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821 APT T++ I GVS I+PS+ ++V++ + G+ + + E+ +R + E ++ Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARRGGFHSKELFEKLV 491 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880 S HD IE IPD LK++ TA I P W I + QK+ D A S + + E Sbjct: 492 SSNHLHD-----IECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDHAVSKTVNFSHEA 546 Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSA 908 + + + ++ A+ GLK T Y SR+A Sbjct: 547 TREDMANVFNMAYDKGLKGITVYRDGSRAA 576 >gi|34419510|ref|NP_899523.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio phage KVP40] gi|34333191|gb|AAQ64346.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio phage KVP40] Length = 741 Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 216/790 (27%), Positives = 349/790 (44%), Gaps = 98/790 (12%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205 ++ G F +L ++ +AC + +L+ + DG++ D++ A I + Sbjct: 3 VVKSSGITEEFEESKLMRVLSDACKNTT-IDPHQLLARVKAQLSDGMTSKDIQKAAIKIA 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + ++ +EP+Y V AR + LR++V P F + IE Sbjct: 62 ADSISVEEPDYQYVAARLAMYGLRKDVYGQFDPIP---------------FKQLIERNTA 106 Query: 266 ARL----LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319 + + E D +L YL + +K+ERDF F Y G+ ++Y G+ E PQ Sbjct: 107 IEVYDSEILEKWSDSELEYLESQVKHERDFDFAYAGVMQFKEKYLCKNRGTGAIYETPQY 166 Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 +M +AM L +E ++ K ++FYN +S+ TP + +G R P Q SSC Sbjct: 167 AYMLIAMCLHQEEKYDRLKHVIDFYNAVSTQKLSLPTPIM--AGVRTPTRQFSSCVKIES 224 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I + G+G + +R G+ + + GVIPF K Sbjct: 225 GDSLRSINKVSEAIVDYISKRAGIGVNGGAIRAEGSVVRAGEIRHTGVIPFWKHFQTAVK 284 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA WH++VE+ L L+ N G + R ++ + I L M+R+ N Sbjct: 285 SCSQGGVRGGAATLTYPIWHLEVEKLLVLKNNKGVEENRIRHLDYSVSINRLMMQRLVNN 344 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYER-----QADRGEIKVFRKISAVALWRKMLT 551 TLFSPDE LYG E+ E +ER +AD K ++I A L+ Sbjct: 345 EYITLFSPDERHGA--LYG-EYHTNPEEFERLYLELEADPKVRK--KRIKATELFSIFGQ 399 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-----LNSSSEETAVCNLGSIN 606 TG + F D N +SP ++ + SNLC EI L +S EE A+C L + N Sbjct: 400 ERSSTGRIYPIFVDNLNAQSP--YIEAIKQSNLCMEIALPTYPLGTSYEEIALCTLAAYN 457 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 L A + ++F +LA + +R LDN++D + +E A+K+ + RA+G+G+ F Sbjct: 458 LGAIESPSEF--ARLAPIV---IRALDNLLDYQDYPVEAAEKAKY-RRALGIGITNFAYF 511 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L + Y S A + E ME +S++ I AS+ LA+ERGA + + W +G PID Sbjct: 512 LAKNFVGYDS-SAKYLVHEWMEAMSYYNIQASMMLAKERGANKWHRKTRWAKGQLPID-- 568 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + D+L + L W+ L+ V GMRN A P + + I + I+P Sbjct: 569 -WYNKNVDKL-VKPNYNLDWEALRADVIRYGMRNDTTSAFMPCESSSQISNSTNGIEPP- 625 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 ++S + DG + D LK + Sbjct: 626 -------------------------------RGLVSTKQSKDGVFNQVVPEVDLLKDEYG 654 Query: 847 TAFEI---DPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQAWL---MG 896 A+++ D + + QK++DQ+ S N Y D P+GK ++ I+ + G Sbjct: 655 LAWKVCEKDNFGYLTLVAIMQKFVDQSISANQYYDPSKFPNGKIPMERIFEELAFCSHYG 714 Query: 897 LKTTYYLRSR 906 +KT YY +R Sbjct: 715 IKTLYYSNTR 724 >gi|312885177|ref|ZP_07744857.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309367190|gb|EFP94762.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 760 Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 210/794 (26%), Positives = 340/794 (42%), Gaps = 85/794 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E L+ E+ + +E Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLF-EHVTKLVES 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +LV L + + ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDKHILEDYTQAELVELDSFIDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIFESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K + + + FY+ S+F TP + +G R P Q SSC L Sbjct: 173 YILVAACLFAKYPKHNRLSYIKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 291 CCSQGGVRGGAATLFYPIWHGESRALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEG 350 Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + ++ FE Y YE + + A+ L+ ++ Sbjct: 351 GNITLFSPSDVPGLYDAFFEDQDKFERLYVQYENDDTVKK----ETVKAIELFSILMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + S E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSQVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+ +L+ + VR LD ++D + + A KS R +G+G++ + Sbjct: 467 FNLGA--IKSLDDFAELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I +H + ASV LA+E+G F + + +G+ PID Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVNLAKEQGKCPLFHETNYAKGLLPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D + + WD L++ + G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDTDSIC-DEPLHYDWDSLREEIVEHGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + +K++ G VV F + LW D+ +DG Sbjct: 638 PRGYVSIKASKDGILKQVVPEFSEYKENYELLW------DIGSNDGY------------- 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMG 896 +H QK++DQA S N D SG KKL A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYG 725 Query: 897 LKTTYYLRSRSATS 910 +KT YY +R S Sbjct: 726 VKTLYYHNTRDGAS 739 >gi|319744437|gb|EFV96794.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae ATCC 13813] Length = 722 Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 186/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y + FAF ++G Y+ Y L +R + + + RV M EK A + + Sbjct: 84 YTKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522 ++ D++ R ++ IPD+ + N LFSP D+ +YGK +I+ Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319 Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E YE +I K F ISA L++ + + FE+G+P+I F+D N ++P + G + Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N++S+ CNLGSIN +A + D++KL I ++ Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD + + + KK N + A+GLG M L HI Y S EA++ D Sbjct: 434 RALDRISRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736 ++++A AS LA+E+G + F S + G + LLA E Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + S+ W +L + +K IG+ N++ +A+APT +I+ + + S+ P Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850 +V+ ++ R +G++G + +P D+ A+E Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + P +I A+ QK IDQA SL L++ D+ + + L+ Y QA+ + YY+R R Sbjct: 635 VGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691 >gi|238761951|ref|ZP_04622924.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] gi|238699679|gb|EEP92423.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] Length = 761 Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 208/792 (26%), Positives = 343/792 (43%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + + + +++ E Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFAHVTKMVDMGKYDKHLLED 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 A E M F + + RD F Y ++ L +Y + ++G E Q + Sbjct: 123 YTAEEF-EQMDTF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + +D ++ ++ ++ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWEMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSA 908 +KT YY +R Sbjct: 726 VKTLYYQNTRDG 737 >gi|301156449|emb|CBW15920.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus parainfluenzae T3T1] Length = 756 Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 210/795 (26%), Positives = 342/795 (43%), Gaps = 91/795 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGTL N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P+ H + +Y + Sbjct: 65 AAADLISKDTPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKY-----DPA 118 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + A E + D + + RD F Y ++ L +Y + + G E Q + Sbjct: 119 LLADYTREEWDEMD-----GFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I +A + KY G+G + +R LG+ I G G IPF K Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSA 288 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ Sbjct: 289 VKSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLI 348 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 + A TLFSP +V L++ + +FE Y YE+ + + R + AV L+ ++ Sbjct: 349 KGADITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG +I D CN SP V V SNLC EI L + + E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL + D+L S AVR LD ++D + + AK+S+ R++G+G++ Sbjct: 465 SAFNL-----GKLENLDELESLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A ++ + E I ++ + AS+ LA+E GA F + + +G+ P Sbjct: 520 YAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILP 579 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ D L W+ L++ +K G+RNS A+ P+ T + I + I Sbjct: 580 IDT---YKNDIDSLT-QEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDL 841 +P ++ +K++ G V N + LWD IP + Sbjct: 636 EPPRGHVSIKASKDGILKQVVPDYENLSDNYELLWD-------------------IPSND 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWL 894 +H QK++DQA S N D E + + + A+ Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSRSAT 909 GLKT YY +R Sbjct: 724 YGLKTLYYQNTRDGA 738 >gi|66391515|ref|YP_239040.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43] gi|62288603|gb|AAX78586.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43] Length = 751 Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 208/793 (26%), Positives = 348/793 (43%), Gaps = 83/793 (10%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE-TALIFS 205 ++ G F ++L ++ A G +++ L + DG++ ++ A+ ++ Sbjct: 7 VIKSSGVSQPFEKEKLFKVLNWASVG-KNIDVNAFLESVVDLLRDGMTTKQIQGVAIKYA 65 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + KEP++ V A + LR+ V P + E+ + ++ G Sbjct: 66 ADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVDAGKY 114 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323 + + D+ Y ++K+++DF F Y G+Q L +Y L NG E PQ FM Sbjct: 115 DKEILTKWTKADIEYFEENIKHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQYAFML 174 Query: 324 VAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPD 378 +AM L E V+FYN +S TP + +G R P Q SSC + D Sbjct: 175 IAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIM--AGVRTPTRQFSSCVVIESGD 232 Query: 379 DLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 L G A+ + + KY G+G + +R +G+ I G GVIPF K Sbjct: 233 SL-GSLNAV--TSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA Y WH++VE L L+ N G + R ++ + DL KR+ Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEVENLLVLKNNKGVENNRIRHLDYGVQLNDLMYKRLIN 349 Query: 496 NAGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N TLFSPD +D L+D + + + +E ++ ++I A L++ ++ Sbjct: 350 NDYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPTVRKKRIKAADLFQLLVQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSS---SEETAVCNLGSINLLAH 610 +TG +I N Q V V SNLC EI + +S ++ +G L+A Sbjct: 410 QTGRKYIFNSHHVN---QQGSFSVPVRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLMAI 466 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +N D + + R AVR LDN++D + + A K+ R++G+G+ + S L Sbjct: 467 VLDNA-DVSEFPALTRIAVRALDNLLDYQNYPVAAALKAKQ-RRSLGVGITNYASWLASN 524 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + E ME ++ + AS+ELA+ERGA F + + QG+ PID Sbjct: 525 YCDYSEAYAGNV-HELMEAFQYNLLVASMELAKERGACGLFHETKYAQGLLPID---WYC 580 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + DELA+ W+ L+ +K G+RNS A+ P + + + + I+P + Sbjct: 581 KTVDELAL-PVYNCDWEWLRGEIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPVS 639 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKS+ G F N + N+ Q D +D + + G + ++ + Sbjct: 640 VKSSKEGSF---NQVVPNQNDQIDFYDYLWTMAKRGNKGYLSHVAVM------------- 683 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTTY 901 QK++DQA S N D P GK D +Y + G+KT Y Sbjct: 684 -------------QKFVDQAISANTNYDPANFPDGKVKSETIIDDLLYANYY--GVKTLY 728 Query: 902 YLRSRSATSVEKS 914 Y +R +++ Sbjct: 729 YHNTRDGAGEDEA 741 >gi|157375443|ref|YP_001474043.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sediminis HAW-EB3] gi|157317817|gb|ABV36915.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3] Length = 762 Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 215/809 (26%), Positives = 359/809 (44%), Gaps = 97/809 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ G + + ++ ++ A L +VS V ++ +DG+ + +I Sbjct: 5 LKVTKRSGERETIDLDKIHRVITWAAKDLNNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ ++ P+ LY E+ + +E G Sbjct: 65 AAADLISPESPDYQFLSARLAIFHLRKKAFGQ-FEPPK---------LY-EHVVKLVEMG 113 Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A +LH+ + +L L + + RD F Y ++ L +Y + + E Q Sbjct: 114 KYDAHILHDYSRE-ELDTLDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ +S+F TP + +G R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLTYIKNFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G +PF K Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRQLDYGVQLNKVMYQRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE+ + +V A L+ ++ Sbjct: 350 GGMITLFSPSDVPGLYDAFFEDQDEFERLYHQYEQDDSVRKTQV----KAAELFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V + SNLC EI L + E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 ++NL A D +L AVR LDN++D + I A+KS+ R +G+G++ F Sbjct: 466 ALNLGA-----IKDLSELEPLADLAVRALDNLLDYQDYPITAAQKSSMNRRTLGIGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + L + Y+ A I ++ E I ++ + AS+ LA+E+GA SF + + +G+ PI Sbjct: 521 ANYLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPSFHETSYSKGILPI 580 Query: 724 DSIGL-LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D+ L ++ DE L M+ W+ L++ + G+RNS A+ P+ T + I + Sbjct: 581 DTYKRHLDQICDEPLHMD------WETLRQDIVQHGLRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VKS+ G +LKQ ++ D + S + ++P++ Sbjct: 635 IEPPRGLISVKSSKDG-----------QLKQ-------VVPDFDKYQYSYELLWQMPNNE 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQ 891 + QK++DQA S N D PS G+K+ D + Sbjct: 677 GYLQLVGL-------------MQKFVDQAISANTNYD-PSRFEGQKVPMQVLLKDLL--N 720 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 A+ +G+KT YY +R + S + V+ Sbjct: 721 AYKLGVKTLYYHNTRDGATDSHSDIVSVE 749 >gi|283786034|ref|YP_003365899.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter rodentium ICC168] gi|282949488|emb|CBG89101.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter rodentium ICC168] Length = 761 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 215/799 (26%), Positives = 348/799 (43%), Gaps = 99/799 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------EFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP ++ L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 EEITLFSPSDMPGLYDAFFADQDEFERLYCQYEKDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A N+ + + LA AVR LD ++D + I A++ R +G+G++ + Sbjct: 467 FNLGA--INSLEELEDLAV---LAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID Sbjct: 522 YYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D +A + W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDAIA-SEPLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G L+Q ++ D ++ +GN Sbjct: 638 PRGYVSIKASKDG-----------ILRQ-------VVPDYEH----LGN----------- 664 Query: 845 HATAFEIDPMW-------LIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYR 890 A+E+ +W ++ QK+IDQ+ S N D PSGK +L Sbjct: 665 ---AYEL--LWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLL 719 Query: 891 QAWLMGLKTTYYLRSRSAT 909 A+ G+KT YY +R Sbjct: 720 TAYKFGVKTLYYQNTRDGA 738 >gi|124516151|gb|EAY57659.1| ribonucleotide reductase [Leptospirillum rubarum] Length = 732 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 173/621 (27%), Positives = 282/621 (45%), Gaps = 86/621 (13%) Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLAL---KETEKEKRAVEFYNLLSSFHFMC 353 L++L RY + E P+ F R+A +A + +E+E A E+Y ++S F+ Sbjct: 14 LKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFMASLDFLP 73 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 ++PT+ N+G QLS+CF+ V D + IF ++ A++ + GG G ++ +R GA Sbjct: 74 NSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSRLRPKGAV 133 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + T G++ G + F+KV N + A+ QGG R+GA L H D+ EF+D + D Sbjct: 134 VRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCKM----DL 189 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + + N + I D+FM+ V ++ + L +P + L +E Sbjct: 190 TQVTNFNISVAITDVFMQAVKEDGEYDLIAPHNGEVVGRLRARE---------------- 233 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 VF KI+ A + G P + F D N +P ++N C E L Sbjct: 234 --VFDKIAHNA---------WANGEPGLFFIDTANRANPTPSRWTYEATNPCGEQVLGPY 282 Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL H ++ + D+++L ++ AVR LDNV+D N I + Sbjct: 283 ES----CNLGSINLERHVRSSATGKPEVDWERLGRSVYLAVRFLDNVVDANRFPIPELAA 338 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 N R IGLG+MGF L L IPY S E +E+A++ M FI A S +LA+ G + Sbjct: 339 VNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDLAKVHGPF 398 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 ++G IG RNS+ + IAP Sbjct: 399 PYYEG------------IGTRK----------------------------RNSHLLTIAP 418 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYH 827 T TI+ I S +P + ++ K+ M G + + +R+ W + + + + Sbjct: 419 TGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEIVARREGFWSDGLAEKIVQN 478 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 GS + +P+ +K+ ATA +I P W + + QK+ID A S + L E + + ++ Sbjct: 479 HGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQEATVEDVE 538 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 Y ++ +G K R S Sbjct: 539 DAYLLSFELGCKGITVYRDGS 559 >gi|291287794|ref|YP_003504610.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Denitrovibrio acetiphilus DSM 12809] gi|290884954|gb|ADD68654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Denitrovibrio acetiphilus DSM 12809] Length = 761 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 168/621 (27%), Positives = 279/621 (44%), Gaps = 77/621 (12%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNLLSSFH 350 + +L RY I+G +E P F RVA+ +A + +K A FY +++ Sbjct: 21 ITVLEKRYLKRDISGKPVEKPIDMFRRVALNIAEADKNYDKDADILSTATAFYEQMAALK 80 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QL++CF+ V D L IF A++ A++ K GG G ++ +R Sbjct: 81 FLPNSPTLMNAGRELQQLAACFVLPVDDSLEAIFEAVKNTALIHKSGGGTGFSFSRLRPK 140 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G + F+ V + + QGG R+GA L H D+ EF+ + Sbjct: 141 DDVVKTTKGVSSGPVSFMTVFDAATETIKQGGTRRGANMGILRVDHPDIMEFIYAK---- 196 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 +D+ + + N + I + FM+ V + + L++P Sbjct: 197 EDKTKLTNFNLSVGITEKFMQAVLNDTDYDLYNPKTG----------------------- 233 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 K K+ A ++ M+ + +E G P I + D N +P G + S+N C E L Sbjct: 234 ----KTAGKLKAKEVFDTMVQLAWEGGDPGIVYLDRINAENPTPKEGDIESTNPCGEQPL 289 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGSINL + + + D++ L TI AV LDNVID+N + I++ Sbjct: 290 LPYES----CNLGSINLGKYVKDGKIDWEDLEKTIEVAVHFLDNVIDMNKYPIQQINDQT 345 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLGLMG+ L +L IPY + EA ++A++ M+FI S LA RG + S Sbjct: 346 KRNRKIGLGLMGWADMLAMLAIPYNTDEATDLAEKVMQFIRDKGREKSSALAVIRGDFPS 405 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 FK S++ + F MRN+ IAPT Sbjct: 406 FKDSIYPKMGFK----------------------------------NMRNATITTIAPTG 431 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 TI+ I S I+P + + + M + V S + ++ +R+ + + + G+ Sbjct: 432 TISIIGSCSSGIEPYFAIAFYRQVMDNNKLVEVSPVFKDIAKREGFLSDELLEKVAETGT 491 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889 + +P+ ++ T+ EI P W + + QK+ D A S + + +E + + + Y Sbjct: 492 AHGLSMVPEKWQEAFVTSHEITPFWHTKMQAAFQKYTDNAVSKTVNFPNEATIEDVKKTY 551 Query: 890 RQAWLMGLKTTYYLRSRSATS 910 ++ +G K T R S T Sbjct: 552 LLSYNLGCKGTTIYRDGSRTG 572 >gi|323494791|ref|ZP_08099890.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio brasiliensis LMG 20546] gi|323310984|gb|EGA64149.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio brasiliensis LMG 20546] Length = 760 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 215/796 (27%), Positives = 344/796 (43%), Gaps = 89/796 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G S + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDEYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSKFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE IK + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDP---SIKK-ETVKAIEMFSILMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL + + D+++L++ + VR LD ++D + + A KS R +G+G++ + Sbjct: 466 AFNLGS--IKSLDDFEELSNLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + ASVELA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFDETNYAKGLMPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L + WD L++ + T G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDVDLICDEPLHYDWDGLRQEIMTHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKDNYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894 +H QK++DQA S N D SG KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATS 910 G+KT YY +R S Sbjct: 724 FGVKTLYYHNTRDGAS 739 >gi|303238293|ref|ZP_07324829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetivibrio cellulolyticus CD2] gi|302594339|gb|EFL64051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetivibrio cellulolyticus CD2] Length = 778 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 188/671 (28%), Positives = 305/671 (45%), Gaps = 113/671 (16%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE----KEKRAVE--FYNLLSSFH 350 +++L RY NG +E P+ FMRVA +AL + + KE +A+E FY+++ + Sbjct: 8 VKVLEKRYLSKDENGCLLEDPKGMFMRVAKAVALADKDFVSAKELKAIEQEFYDMMLNLE 67 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ + D + GIF ++ A++ K GG G ++ +R Sbjct: 68 FLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFSFSRLRQK 127 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA ++ T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K+ Sbjct: 128 GASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFISCKKDNS 187 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D + N + I + FM V + L P Sbjct: 188 D----ITNFNISVGITEKFMSAVEAAGDYDLIDPHSG----------------------- 220 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 K K++A ++ ++ M + G P I F D N + +G + S+N C E L Sbjct: 221 ----KTVGKLNARYVFDIIIDMAWNNGEPGIIFLDRLNKDNVTPELGNIESTNPCGEQPL 276 Query: 591 NSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 CNLGSINL N + DYDKL +T R AV LDNVID+N + + + Sbjct: 277 LPYE----ACNLGSINLSLMIKNTDGVPEVDYDKLGNTARKAVHFLDNVIDVNKYPLPEI 332 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + R IGLG+MG+ L L+I Y S +A+ +A++ M FI + AS+ELA+++G Sbjct: 333 DEMTRGTRKIGLGVMGWADMLCKLNIAYNSQKAIALAEKIMHFIQEESRKASIELAEKKG 392 Query: 707 AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 + + S++ D G I +RN+ Sbjct: 393 VFPHYDKSIYKDLG------------------------------------IKIRNATTTT 416 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----------FTVVNSFLVNELKQRD 814 IAPT T++ I GVS I+P + Y+++ M D V++ F +EL +R Sbjct: 417 IAPTGTLSIIAGVSSGIEPLFAISYIRNVMDNDELIEVNPLFKQIAVIDGFYSDELMRR- 475 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + G+I IP ++ + AT+ +I P W ++ + Q++ D A S Sbjct: 476 ----------IANKGTIHGFPEIPKSVQSVFATSHDISPEWHVKMQAAFQRYTDNAVSKT 525 Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 + L +E + + + ++ A+ K R S ++ + V GK V + Sbjct: 526 VNLRNEATKEDVSEVFWHAYKTYCKGVTIYRDGS-RDLQVLNIGKVKGKEQEATVEE--- 581 Query: 934 STHSLGIPSSC 944 S+ IP+ C Sbjct: 582 ---SVEIPTKC 589 >gi|238751210|ref|ZP_04612704.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] gi|238710484|gb|EEQ02708.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] Length = 761 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 208/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +P K H + + + +++ E Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFAHVTKMVDMGKYDKHLLED 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 A E M F + + RD F Y ++ L +Y + ++G E Q + Sbjct: 123 YTAEEF-EQMDTF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVSACL-FSNYPRETRLDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 DDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L + DE W+ L+K ++ G+RNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDAISDE-----PLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G ++ + + ++ ++ ++ D+ +DG Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWDMPNNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896 ++ QK++DQA S N D PSG K+L + G Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725 Query: 897 LKTTYYLRSRSAT 909 +KT YY +R Sbjct: 726 IKTLYYQNTRDGA 738 >gi|195977667|ref|YP_002122911.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974372|gb|ACG61898.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit NrdE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 724 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 188/680 (27%), Positives = 317/680 (46%), Gaps = 80/680 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y++ F+F +G Y Y L ++GS + + F R M + + Sbjct: 84 YQQKFSFLSLMGAMKFYQSYALKTLDGS--QYLEHFEDRAVMNALFLANGDPDLVRDLID 141 Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + S F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 142 QILSRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R +G+ I G ++ G++P +K+ D+ NQ G+R+GA YL H ++ FL Sbjct: 202 LTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522 D ++ D++ R + IPD+ + +N LFSP D+ +YGK+ +IA Sbjct: 262 DTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAI 318 Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+R IK ISA L++ + + FE+G+P++ F D N R+P G + Sbjct: 319 TEEYDRLVANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVM 377 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI S++ E CNLGSIN +A + +++L I T++ Sbjct: 378 SNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSIN-IAEAMKHAAGFEQL---IATSI 433 Query: 630 RVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LD+V D++C ++EK +NH A+GLG M L HI Y S EAV+ D Sbjct: 434 RALDHVSRASDVSCAPSVEKGNAANH---AVGLGAMNLHGFLATNHIFYDSAEAVDFTDL 490 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELA 737 ++++A AS +LA+E+GA++ F+ S + G + +A + + Sbjct: 491 FFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYG 550 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 S W EL ++ G+ N++ MA+APT +I+ + + S+ P + V+ Sbjct: 551 FRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHL 610 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 V ++ ISD D+ A+E+ P +I Sbjct: 611 GRIYVPAY--------------QISD---------------DNYAYYERGAYEVGPEPII 641 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + QK +DQA SL L++ D+ + + L+ Y A+ + + YY+R R + L Sbjct: 642 NIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR------QDIL 695 Query: 917 KGVDG--KLNAVPVTDPNSS 934 +G + + V +TD N+S Sbjct: 696 EGSEQYEEDTIVALTDTNAS 715 >gi|51595598|ref|YP_069789.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|51588880|emb|CAH20494.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pseudotuberculosis IP 32953] Length = 762 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 215/809 (26%), Positives = 347/809 (42%), Gaps = 93/809 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPTLFAH----------VSKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVSACL-FSGYPRESRLDYIKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ N W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAISNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + +K++ G VV + + LW ++ +DG Sbjct: 637 PPRGYVSIKASKDGILRQVVPEYERLKGAYELLW------EMPNNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895 ++ QK++DQA S N D PSG K+L + Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKF 724 Query: 896 GLKTTYYLRSR-SATSVE---KSTLKGVD 920 G+KT YY +R A V+ +S+L G D Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSSLPGDD 753 >gi|261253083|ref|ZP_05945656.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio orientalis CIP 102891] gi|260936474|gb|EEX92463.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio orientalis CIP 102891] Length = 760 Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 214/796 (26%), Positives = 339/796 (42%), Gaps = 89/796 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G S + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y + + T H+ + R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVARMVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V+ L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVSACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSVKK----ETVKAIEMFSILMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D L VR LD ++D + + A KS R +G+G++ + Sbjct: 466 AFNLGAIKS-----LDDLEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLRASVALAKEQGKCPSFHETNYAKGLLPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L + WD L++ + T G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCDEQLHYDWDGLREEIVTHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKDNYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894 +H QK++DQA S N D SG KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATS 910 G+KT YY +R S Sbjct: 724 YGVKTLYYHNTRDGAS 739 >gi|22126851|ref|NP_670274.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis KIM 10] gi|45440762|ref|NP_992301.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|108806925|ref|YP_650841.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Antiqua] gi|108812923|ref|YP_648690.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Nepal516] gi|145599748|ref|YP_001163824.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Pestoides F] gi|149366795|ref|ZP_01888829.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis CA88-4125] gi|153949921|ref|YP_001401733.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|162420851|ref|YP_001605846.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Angola] gi|165924688|ref|ZP_02220520.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938388|ref|ZP_02226946.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009893|ref|ZP_02230791.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211738|ref|ZP_02237773.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400331|ref|ZP_02305844.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419736|ref|ZP_02311489.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423852|ref|ZP_02315605.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025072|ref|YP_001721577.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis YPIII] gi|186894661|ref|YP_001871773.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|218928373|ref|YP_002346248.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis CO92] gi|229841158|ref|ZP_04461317.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843263|ref|ZP_04463409.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229894121|ref|ZP_04509307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Pestoides A] gi|229903353|ref|ZP_04518466.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Nepal516] gi|270487163|ref|ZP_06204237.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294503228|ref|YP_003567290.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|21959883|gb|AAM86525.1|AE013899_2 ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Yersinia pestis KIM 10] gi|45435620|gb|AAS61178.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Microtus str. 91001] gi|108776571|gb|ABG19090.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Nepal516] gi|108778838|gb|ABG12896.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Antiqua] gi|115346984|emb|CAL19875.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis CO92] gi|145211444|gb|ABP40851.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Pestoides F] gi|149291169|gb|EDM41244.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis CA88-4125] gi|152961416|gb|ABS48877.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis IP 31758] gi|162353666|gb|ABX87614.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis Angola] gi|165913766|gb|EDR32385.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923748|gb|EDR40880.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991289|gb|EDR43590.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207509|gb|EDR51989.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962477|gb|EDR58498.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050280|gb|EDR61688.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056701|gb|EDR66464.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751606|gb|ACA69124.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis YPIII] gi|186697687|gb|ACC88316.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis PB1/+] gi|229679123|gb|EEO75226.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Nepal516] gi|229689610|gb|EEO81671.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697524|gb|EEO87571.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704006|gb|EEO91019.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Pestoides A] gi|262361267|gb|ACY57988.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D106004] gi|262365196|gb|ACY61753.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D182038] gi|270335667|gb|EFA46444.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294353687|gb|ADE64028.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|320015944|gb|ADV99515.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 762 Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 215/809 (26%), Positives = 347/809 (42%), Gaps = 93/809 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ P H + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPTLFAH----------VSKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + ++G E Q + Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L +E R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVSACL-FSGYPRETRLDYIKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP + V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D L AVR LD ++D + I A++ R +G+G++ F Sbjct: 467 FNLGAIDS-----LDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ N W+ L+K ++T G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDAISNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + +K++ G VV + + LW ++ +DG Sbjct: 637 PPRGYVSIKASKDGILRQVVPEYERLKGAYELLW------EMPNNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895 ++ QK++DQA S N D PSG K+L + Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKF 724 Query: 896 GLKTTYYLRSR-SATSVE---KSTLKGVD 920 G+KT YY +R A V+ +S+L G D Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSSLPGDD 753 >gi|145634464|ref|ZP_01790174.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittAA] gi|229846891|ref|ZP_04466998.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 7P49H1] gi|145268444|gb|EDK08438.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittAA] gi|229810380|gb|EEP46099.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 7P49H1] Length = 756 Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ + W+ L+K ++ G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G V N + + LWD IP + Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V++ G G Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|224371724|ref|YP_002605888.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfobacterium autotrophicum HRM2] gi|223694441|gb|ACN17724.1| NrdA [Desulfobacterium autotrophicum HRM2] Length = 736 Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 174/622 (27%), Positives = 276/622 (44%), Gaps = 83/622 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLLSSFHFM 352 L +L RY G +E P FMRVA +A E FY +++ F+ Sbjct: 17 LTVLKRRYLQKDKRGRVVETPGQMFMRVASYIAAAEKAHGNDPGVYRDLFYGIMARLEFL 76 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+GT QL++CF+ V D + GIF ++ A++ K GG G ++ +R + Sbjct: 77 PNSPTLMNAGTDLGQLAACFVLPVEDSISGIFETVKNAALIHKSGGGTGFSFSRLRPKDS 136 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F+K+ N V QGG R+GA A L H D+ EF+ ++ + D Sbjct: 137 RVGSTGGVASGPVSFMKIFNVATEQVKQGGTRRGANMAVLRVDHPDIMEFILCKQASAD- 195 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ N + + D FM + + L P + Sbjct: 196 ---LNNFNISVGVTDEFMVKARTGLPYNLVDPRDG------------------------- 227 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +V ++A ++ M+ + G P I F D N +P +G + S+N C E L Sbjct: 228 --RVVGTLNATDVFEAMVKQAWHNGDPGIIFLDRINQDNPTPLLGEIESTNPCGEQPL-- 283 Query: 593 SSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGS+NL + DY L TI AVR LD+ ID + + +++ Sbjct: 284 --LPMEACNLGSVNLAKFVVEKKGKPTIDYASLGKTIALAVRFLDDTIDRSIYPLDEITA 341 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +R IGLG+MGF L L +PY S AV +A+E M F+ A AS LAQERG + Sbjct: 342 MVRGNRKIGLGVMGFADLLFALELPYNSDRAVALAEEVMAFVQSEARKASRALAQERGVF 401 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F D+ VF D K RN+ IAP Sbjct: 402 ENF-----DKSVFRND-----------------------------KDRRFRNATVTTIAP 427 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T T++ I G S I+P + ++++ M + F VN + + + + EA++ + Sbjct: 428 TGTLSIIAGSSSGIEPLFALSFIRTIMDNETFLEVNPHFMAVAQAQGFYSEALMEKIA-K 486 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKL 885 G+I + IP+ ++K+ TA ++ P W ++ + QK D A +++NL D + + Sbjct: 487 TGTIKGMTEIPESVRKVFVTAHDVSPAWHVKMQAAFQKHTDNAVSKTVNLPRDA-TEHDV 545 Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907 IY A+ G K R S Sbjct: 546 AEIYTSAFDFGCKGVTIYRDGS 567 >gi|319896902|ref|YP_004135097.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae F3031] gi|317432406|emb|CBY80761.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae F3031] Length = 756 Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKQLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ + W+ L+K ++ G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G V N + + LWD IP + Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V++ G G Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|145629253|ref|ZP_01785052.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 22.1-21] gi|144978756|gb|EDJ88479.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 22.1-21] gi|309750763|gb|ADO80747.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus influenzae R2866] Length = 756 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ + W+ L+K ++ G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G V N + + LWD IP + Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V++ G G Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|78484808|ref|YP_390733.1| ribonucleotide-diphosphate reductase subunit alpha [Thiomicrospira crunogena XCL-2] gi|78363094|gb|ABB41059.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Thiomicrospira crunogena XCL-2] Length = 760 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 215/808 (26%), Positives = 349/808 (43%), Gaps = 114/808 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + +G + +++ ++ A GL++VS V ++ YDG+ SD+ +I Sbjct: 6 MNVAKRNGETEPLDLEKIHRVITWAAEGLENVSVSEVELRSHIQFYDGMKTSDIHETIIK 65 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ P ++ + Sbjct: 66 SAADLISESAPDYQHLAARLAIFHLRKKAFDR---------------FTPPTLFEHVNKM 110 Query: 264 VKARLLHESMMD------FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315 V+ RL + D FD L N ++++RD F Y ++ L +Y + + G E Sbjct: 111 VRNRLYDPQIQDDYTKAEFD--ELDNYIQHDRDMNFSYAAVKQLEGKYLVQNRVTGKIYE 168 Query: 316 MPQAFFMRVAMGLAL---KETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP-- 366 PQ +M + M L + E K ++ FY+ S+F TP + SG R P Sbjct: 169 SPQFIYMLIPMSLFAHYPNDAEPGKTRLDYVKRFYDAASNFKLSLPTPIM--SGVRTPTR 226 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 Q SSC L D L I G+G + +R LG+ I G G+IP Sbjct: 227 QFSSCVLIECGDSLDSINATSSSIVKYVSQRAGIGVNVGQIRALGSEIRGGEAYHTGMIP 286 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 F+K + +QGG R GA + WH++VE + L+ N G + R ++ + Sbjct: 287 FIKHFQTAVKSCSQGGVRGGAATLFFPIWHLEVESLIVLKNNRGVEENRARHLDYGVQVN 346 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAV 543 L +R+ + TLFSP +V L+D + +EFE Y+ YE AD K + + AV Sbjct: 347 KLMYQRMIEGGNITLFSPSDVPGLYDAFFEDQEEFERLYKIYE--ADDTIRK--KTMKAV 402 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRS---PQQHVGVVHSSNLCTEIT-----LNSSSE 595 L+ ++ +TG +I D N S P++ +H SNLC EIT LNS + Sbjct: 403 DLFTQVAQERAQTGRIYIQNVDHSNTHSSFDPKK--APIHQSNLCLEITLPTHPLNSVDD 460 Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 E A+C L + NL A + +L VR LD+++D + +E A+K++ Sbjct: 461 PEGEIALCTLSAFNLGALEDLD-----ELDELSDLIVRALDSLLDYQDYPVEAARKASMG 515 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R +G+G+ L H+ Y+ A + ++ E I ++ + AS+ L++E G F+ Sbjct: 516 RRTLGVGVTNLAYYLAKNHVKYSDGSANNLVHKAFEAIQYYLLKASLNLSKEYGKCDFFE 575 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTA 770 + + QG+ PID+ + EL T L W+ L+ ++ G+RNS A+ P Sbjct: 576 DTKYAQGILPIDT------YKKELDEFCTEPLHYDWETLRSEIQKHGLRNSTMTALMPCE 629 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 T + I + I+P + VK++ G VV F + LW Sbjct: 630 TSSQITNSTNGIEPPRGYVSVKASKDGILKQVVPGFKEFRDQYELLW------------- 676 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GK--- 883 +IPD+ + QK++DQA S N D G+ Sbjct: 677 ------QIPDNKGYLQLVGI-------------MQKFVDQAISANTNYDPAKFEDGRVPI 717 Query: 884 KL---DFIYRQAWLMGLKTTYYLRSRSA 908 KL D +Y A+ GLKT YY +R Sbjct: 718 KLVLQDLLY--AYKAGLKTLYYHNTRDG 743 >gi|82407441|pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp-Gdp Complex gi|82407442|pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp-Gdp Complex gi|83753672|pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp-Adp Complex gi|83753673|pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp-Adp Complex gi|83753674|pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|83753675|pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|83753676|pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|83753677|pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|85543938|pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp Complex gi|85543939|pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp Complex gi|85543940|pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Udp Complex gi|85543941|pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Udp Complex gi|85543942|pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp Complex gi|85543943|pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp Complex gi|85543944|pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp Complex gi|85543945|pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp Complex gi|301598861|pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp And Adenosylcobalamin gi|301598862|pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp And Adenosylcobalamin gi|301598863|pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosylcobalamin gi|301598864|pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosylcobalamin gi|301598865|pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosine gi|301598866|pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosine Length = 644 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 190/641 (29%), Positives = 304/641 (47%), Gaps = 108/641 (16%) Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345 IL DRYF+ ++G+ +E + + + K+ EK R E F+ + Sbjct: 22 ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRV 81 Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378 L + F+ ++PTLFN+G +H LS+CF+ V D Sbjct: 82 LKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + IF A++E A++ K GG+G++++ +R G+ + GT+GK+ G + F+ V N V Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG +R+GA+ L H D+EEF+D +K NT + + F + G Sbjct: 202 KQGSRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 + P + ++ LY ++ E+ E R I+ +K+ L+RK+ T +++G Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617 P + F N P ++S+N C EI L+ + CNLGSI++ A F NN F D Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + L ++ AVR LDNVID+N I+K K+ R +GLG+MGF L+ L IPY S Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733 EA + A M FI+ HA S EL +E+G + + S + D V F + E+R Sbjct: 411 EARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + M + R RN + IAPT +I+NI S ++P++ Y + Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 D T VN++ + L E + I GS+ +I +P+ +KK+ A +I Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575 Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLD 878 DPM L++ A +R K I+ QS LN+YL+ Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLE 616 >gi|148825801|ref|YP_001290554.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittEE] gi|148715961|gb|ABQ98171.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittEE] gi|309972946|gb|ADO96147.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus influenzae R2846] Length = 756 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ + W+ L+K ++ G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G V N + + LWD IP + Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V++ G G Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|148262268|ref|YP_001228974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter uraniireducens Rf4] gi|146395768|gb|ABQ24401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter uraniireducens Rf4] Length = 565 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 179/623 (28%), Positives = 280/623 (44%), Gaps = 78/623 (12%) Query: 298 LQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRAV----EFYNLLSSFHFM 352 L++L RY L R IE P+ F R+A +A E RA FY LLSS F+ Sbjct: 8 LKVLRARYLLKDEQGRVIESPREMFGRIARSVAEAEKFYGDRACYWEERFYELLSSLRFL 67 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PT+ N+G QL++CF+ V D + GIF L+ A++ + GG G ++ +R Sbjct: 68 PNSPTIMNAGKSPGQLAACFVLPVEDSMPGIFDTLKNAALILQSGGGTGFSFSRLRPKAD 127 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F+K+ N + QGG R+GA L H DV EF+ +++ D Sbjct: 128 IVRSTGGIASGPVSFMKIYNTATDVIKQGGARRGANMGILRIDHPDVLEFIRVKR----D 183 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + + N + I D +M+ + + + L +P L E Sbjct: 184 AKELANFNISLAITDAYMEALRADGEYQLVNPRTGKSAGRLRAGE--------------- 228 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 VF +I A A W ETG P + F D N +P G S+N C E L Sbjct: 229 ---VFGEIVASA-W--------ETGDPGLVFIDRLNRANPTPAAGSFESTNPCGEQPLLP 276 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 C LGS+NL AH DYD L + AVR LD+ ID+N + + ++ + Sbjct: 277 YE----ACVLGSLNLAAHVKGGVIDYDALGRDVAVAVRFLDDTIDVNSYPLPAIERMHKG 332 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R IGLG+MG+ L LL IPY +A +A E M FI + AS LA+ERG + +F Sbjct: 333 NRKIGLGVMGWADMLVLLGIPYDHEKAFRLAREVMRFIRDASREASCALAKERGVFPNFA 392 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS++D P +RN+ IAPT T+ Sbjct: 393 GSIYDAPHMP----------------------------------RLRNATTTTIAPTGTL 418 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I S I+P + Y + + + +N + + K++ + + ++ G++ Sbjct: 419 STIADCSSGIEPLFALAYKRFVLDSELVEINKYFLQMAKEQGFYSVELFQEV-MRRGNLR 477 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQ 891 ++ IP +K++ TA EI P IE + Q++ D A S + L + K+ + Y Sbjct: 478 QVKGIPSRVKRLFRTALEILPEHHIEMQAAFQEYTDNAVSKTINLPNRAKKEDVARAYLL 537 Query: 892 AWLMGLK--TTYYLRSRSATSVE 912 A+ G K T + +R T V+ Sbjct: 538 AYEKGCKGITVFRYGARRGTLVK 560 >gi|294140835|ref|YP_003556813.1| ribonucleoside-diphosphate reductase subunit alpha [Shewanella violacea DSS12] gi|293327304|dbj|BAJ02035.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella violacea DSS12] Length = 762 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 211/797 (26%), Positives = 349/797 (43%), Gaps = 93/797 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ G + + +++ ++ A L++VS V ++ +DG+ + +I Sbjct: 5 MKVTKRSGERETIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ +P K H + +E G Sbjct: 65 AAADLISPEAPDYQFLSARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLVESG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + E +L L + + RD F Y ++ L +Y + + E Q + Sbjct: 114 KYDQHILEDFSREELDILDGYVDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + + FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G +PF K + Sbjct: 232 DSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + + EFE Y YE AD K +I A L+ M+ Sbjct: 352 MISLFSPSDVPGLYDAFFEDQDEFERLYLQYE--ADNSVRKT--QIKATELFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V + SNLC EI L N E A+C L ++ Sbjct: 408 STGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNINDPDGEIALCTLSAL 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL D +L AVR LDN++D + I A++S+ R +G+G++ F + Sbjct: 468 NL-----GKIKDLSELEPLADLAVRALDNLLDYQDYPIIAARQSSMNRRTLGIGVINFAN 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A I ++ E I ++ + AS+ LA+E+G F + + +GV PID+ Sbjct: 523 YLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEKGPCPLFHETTYSKGVLPIDT 582 Query: 726 IGL-LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 L ++ DE L M+ W+ L++ + G+RNS A+ P+ T + I + I+ Sbjct: 583 YKRSLDKICDEPLHMD------WETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VKS+ G +LKQ ++ D + + S + ++P++ Sbjct: 637 PPRGLISVKSSKDG-----------QLKQ-------VVPDFEKYQHSYELLWQMPNNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAW 893 I QK++DQA S N D PS G K+ D + A+ Sbjct: 679 IQLVGL-------------MQKFVDQAISANTNYD-PSRFEGNKVPMQVLLKDLL--NAY 722 Query: 894 LMGLKTTYYLRSRSATS 910 +GLKT YY +R S Sbjct: 723 KLGLKTLYYHNTRDGAS 739 >gi|260778826|ref|ZP_05887718.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604990|gb|EEX31285.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 760 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 216/796 (27%), Positives = 343/796 (43%), Gaps = 89/796 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y + + T H+ + R I+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVSRLIDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + + EFE Y YE IK + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDP---SIKK-ESVKAIEMFSILMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ + Sbjct: 466 AFNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + ASV LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPLFGETNYAKGLLPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L + WD L++ + T G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDLDLVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F + LW ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKDNYELLW------NIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894 +H QK++DQA S N D SG KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPSRFESGKVPMKKLLQDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATS 910 G+KT YY +R S Sbjct: 724 YGVKTLYYHNTRDGAS 739 >gi|145631491|ref|ZP_01787260.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae R3021] gi|144982921|gb|EDJ90434.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae R3021] Length = 756 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 203/793 (25%), Positives = 337/793 (42%), Gaps = 89/793 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ H + LY ++ + + G Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ + W+ L+K ++ G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G V N + + LWD IP + Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSRSA 908 GLKT YY +R Sbjct: 725 GLKTLYYQNTRDG 737 >gi|219849633|ref|YP_002464066.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus aggregans DSM 9485] gi|219543892|gb|ACL25630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chloroflexus aggregans DSM 9485] Length = 820 Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 188/664 (28%), Positives = 307/664 (46%), Gaps = 61/664 (9%) Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351 +L RY L + +G IE P+ F RVA +A + + E+RA FY+L++ +F Sbjct: 18 VLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASSEQVEERAERFYHLMTQGYF 77 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTL N+G QLS+CF+ + D+L I+ L+ A++ + GG G ++ +R Sbjct: 78 EPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFSFSRLRPRN 137 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + T G + G + F+ V N + A+ QGG R+GA L H D+ EF+ + +T Sbjct: 138 DVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFITCKLDT-- 195 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + + N + + D FM+ V + DE DL + + IA + + Sbjct: 196 --TKITNFNISVAVTDAFMRAVDR---------DEEYDLINPRTGQVHIASRDGLKHPLT 244 Query: 532 GEIKV----FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 G++ V ++ A ++ ++ TG P + F D N +P H+G ++N C E Sbjct: 245 GDVLVPPGQPMRLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGAYEATNPCGE 304 Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 L + VCNLGSINL A+ D+D L + + R LDNVID N + +E+ Sbjct: 305 QPLLAYD----VCNLGSINLGKFVTADKTIDWDYLREVVHESTRFLDNVIDANHYPLEQI 360 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + R IGLG+MG+ L L IPY S +A+E+A + M FI + AS +LA+ERG Sbjct: 361 THLSQRIRRIGLGVMGWADMLVRLGIPYNSHDAIELARKVMHFIDEESKVASEQLARERG 420 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + ++ S+W R + + R RL +RN N + Sbjct: 421 PFPEWEYSIWGPDA--------TCARRSDGSRIRPQRL-------------LRNCNVTTV 459 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT TI+ I G S I+P + + + +N V + K R+ W + + Sbjct: 460 APTGTISIIAGCSSGIEPLFAIAFWRYQADSRMLDINQDFVAQAK-REGWYSPELMERIA 518 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 G I + + +P +++++ TA +I P W + + Q++ D A S + + E + ++ Sbjct: 519 DTGHIHHPD-VPAEVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEATPDQV 577 Query: 886 DFIYRQAWLMGLK--TTYYLRSR-----SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 Y A+ +G K T Y SR S S KS K PV + Sbjct: 578 REAYELAFRLGCKGITVYRDGSRENQVLSTGSTGKSESKPAAQSATTTPVELTPRPVPAE 637 Query: 939 GIPS 942 G+PS Sbjct: 638 GLPS 641 >gi|1574509|gb|AAC23305.1| ribonucleoside-diphosphate reductase, alpha chain (nrdA) [Haemophilus influenzae Rd KW20] Length = 781 Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 208/806 (25%), Positives = 344/806 (42%), Gaps = 88/806 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 30 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 89 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 90 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 147 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 148 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 198 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 199 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 255 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 256 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 315 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 316 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 375 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 376 SEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 431 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 432 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 491 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 492 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 546 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 547 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 606 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 607 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 662 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ +K++ G V N + + LWD IP + Sbjct: 663 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 703 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896 +H QK++DQA S N D E + + + A+ G Sbjct: 704 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 750 Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921 LKT YY +R A V++ G G Sbjct: 751 LKTLYYQNTRDGAEDVQEDLDDGCAG 776 >gi|30995466|ref|NP_439801.2| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae Rd KW20] gi|260581254|ref|ZP_05849072.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae RdAW] gi|1172938|sp|P43754|RIR1_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|260092081|gb|EEW76026.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae RdAW] Length = 756 Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 208/806 (25%), Positives = 344/806 (42%), Gaps = 88/806 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 SEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ +K++ G V N + + LWD IP + Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896 +H QK++DQA S N D E + + + A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725 Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921 LKT YY +R A V++ G G Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|76788702|ref|YP_329138.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae A909] gi|77406063|ref|ZP_00783139.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] gi|76563759|gb|ABA46343.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus agalactiae A909] gi|77175343|gb|EAO78136.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] Length = 722 Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 185/657 (28%), Positives = 309/657 (47%), Gaps = 86/657 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y + F F ++G Y+ Y L +R + + + RV M EK A + + Sbjct: 84 YAKKFTFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522 ++ D++ R ++ IPD+ + N LFSP D+ +YGK +I+ Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319 Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E YE +I K F ISA L++ + + FE+G+P+I F+D N ++P + G + Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N++S+ CNLGSIN +A + D++KL I ++ Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + + KK N + A+GLG M L HI Y S EA++ D Sbjct: 434 RALDRVSRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736 ++++A AS LA+E+G + F S + G + LLA E Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + S+ W +L + +K IG+ N++ +A+APT +I+ + + S+ P Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850 +V+ ++ R +G++G + +P D+ A+E Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + P +I A+ QK +DQA SL L++ D+ + + L+ Y QA+ + YY+R R Sbjct: 635 VGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691 >gi|260427754|ref|ZP_05781733.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella sp. SE45] gi|260422246|gb|EEX15497.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella sp. SE45] Length = 707 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 193/661 (29%), Positives = 304/661 (45%), Gaps = 70/661 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D ++R F F +LG Y Y L +G R +E + + VA+ LA + + A+ Sbjct: 85 DAAFKRKFRFPTFLGAFKYYTSYTLKTRDGKRFLERYEDRVVMVALTLARGD---QALAM 141 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 F + + F +TPT N+G + +L SCFL + D++ I + L+K GG Sbjct: 142 SFMEEIVTGRFQPATPTFLNAGKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 201 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I G +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 202 VALMLTNIREHGAPIKGIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 261 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + E Sbjct: 262 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNEEMYLFSPHDVEKVYGVPFSEIS 321 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + + E AD+ K +KI+A A ++ + + FE+G+P+I F+D N +P G + Sbjct: 322 VTEKYAEMVADKHIRK--KKINARAFFQTLAEIQFESGYPYIMFEDTVNRMNPI--AGRI 377 Query: 580 HSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI +N +SE CNLGS+N+ D +TI T Sbjct: 378 TMSNLCSEILQVNEASEFNEDLSYSRMGTDISCNLGSLNIA-----RTMDGPDFGATIET 432 Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V +++ ++ +K N AIGLG M L H+ Y S E +E Sbjct: 433 AIRALTAVSEMSSIESVPSIRKGNDESHAIGLGQMNLHGYLAREHVHYGSAEGIEFTSVY 492 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MN 739 +++HA+ AS LA+ERG + F S + G F D + A V + A + Sbjct: 493 FAAVAYHALRASCALAKERGETFKGFADSEYASGAFFDKYTSRDWLPENARVAELFADVT 552 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798 +R W LK V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 553 LPTRDDWAALKADVMAHGLYNRNLQAVPPTGSISYINNSTSSIHPIVSKIEIRKEGKIGR 612 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ NE N+E D A+EI P LI+ Sbjct: 613 VYYPAPFMSNE-----------------------NLEYYRD--------AYEIGPEALID 641 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + + +DQ SL L+ E + + ++ AW G+KT YY+R R T++E + ++ Sbjct: 642 TYAAATEHVDQGLSLTLFFPAEATTRDINRAQIYAWKKGIKTIYYVRLRQ-TALEGTEVE 700 Query: 918 G 918 G Sbjct: 701 G 701 >gi|1657993|gb|AAB18239.1| ribonucleotide reductase [Thermoplasma acidophilum] Length = 857 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 171/574 (29%), Positives = 280/574 (48%), Gaps = 80/574 (13%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F ++SS F+ ++PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG G Sbjct: 221 FEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTG 280 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + T G + G + F+K+ + T + QGGKR+GA L H D+ E Sbjct: 281 FSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIME 340 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ L K++ + + + N + + D F ++ D+ DL + K Sbjct: 341 FI-LSKDS--ENKVLSNFNISVGVTDDFFDKLDN---------DDYVDLVNPRTK----- 383 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 K+ ++I A +W ++ ++T P + F D N ++P ++VG + S Sbjct: 384 -------------KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIES 430 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINC 640 +N C E L CNLGSINL + + + D+D+L T+ TA R LD+VID N Sbjct: 431 TNPCGEQPLLPYES----CNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANK 486 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+ KK R IGLG+MGF L L IPY S EA+EI ++ M FI+ + AS Sbjct: 487 FPVEQIKKVTRMTRKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQA 546 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ER + ++ GS W++ + I MRN Sbjct: 547 LAEERAVFPAWYGSEWEK-----------------------------------EGIKMRN 571 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819 S IAPT TI+ I G S SI+P + +V+ ++G + VN + ++ ++ E Sbjct: 572 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEE 631 Query: 820 MISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875 ++ + GN+E +I +++KKI TA EIDP W + + Q++ D ++++N+ Sbjct: 632 LMRQV----AETGNLENVKINEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINM 687 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 D + + + YR A + K R +S T Sbjct: 688 RSD-ATREDIARAYRMAKDLHCKGITVYRDKSKT 720 Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 16/105 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ +KI+ AI KA ++V+ + + L ++ V RL + Sbjct: 4 EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDA-------EQLADKVVARLKDKERP 56 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129 + +E+IQD VE LM S + + Y+LYRE+R +R Sbjct: 57 S----VEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIR 97 >gi|229845067|ref|ZP_04465203.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 6P18H1] gi|229812039|gb|EEP47732.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 6P18H1] Length = 756 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 208/807 (25%), Positives = 344/807 (42%), Gaps = 90/807 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +D A+ + W+ L+K ++ G+RNS A+ P+ T + I + I+ Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ +K++ G V N + + LWD IP + Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V++ G G Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|68250261|ref|YP_249373.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 86-028NP] gi|68058460|gb|AAX88713.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae 86-028NP] Length = 756 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 88/806 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ +K++ G V N + + LWD IP + Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896 +H QK++DQA S N D E + + + A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725 Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921 LKT YY +R A V++ G G Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|329123257|ref|ZP_08251825.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus aegyptius ATCC 11116] gi|327471466|gb|EGF16914.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus aegyptius ATCC 11116] Length = 756 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 88/806 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ +K++ G V N + + LWD IP + Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896 +H QK++DQA S N D E + + + A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725 Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921 LKT YY +R A V++ G G Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|226327850|ref|ZP_03803368.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198] gi|225203554|gb|EEG85908.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198] Length = 763 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 212/808 (26%), Positives = 346/808 (42%), Gaps = 97/808 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL++VS V + YDG+ +D+ L+ Sbjct: 5 LLVTKRDGHKERIDLDKIHRVIAWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ +P K H + ++ G Sbjct: 65 AAADLISGDTPDYQYLAARLAVFNLRKKAYGQF--EPPKLYDH---------VKKLVDLG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R L E + + N + ++RD F Y ++ L +YF+ I G E Q + Sbjct: 114 KYDRHLLEDYTQEEFEQMDNFIVHQRDMNFSYAAVKQLEGKYFVQNRITGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + + + FYN +S+F TP + +G R P Q SSC L Sbjct: 174 VLVAACLFSRYPQATRMDYIERFYNAISTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKGQ 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYVQYEKDKSIRQ----KQVKAVELFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSI 605 TG +I D CN SP V + SNLC EI L + + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A N D ++LA R AVR LD ++D + I AK+ R +G+G++ F Sbjct: 468 NLGA--IENLDDLEELA---RLAVRSLDALLDYQDYPILAAKQGAMGRRTLGIGVINFAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + + E I ++ + AS ELA+E+GA F + + +G+ PID+ Sbjct: 523 YLAKHGVRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPIDT 582 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +V + ++ W+ L+K +K G+RNS A+ P+ T + I + I+P Sbjct: 583 YKKSLDVLTKEPLH----YDWEGLRKDIKEHGLRNSTLSALMPSETSSQISNATNGIEPP 638 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + +K++ G V + ER+ Sbjct: 639 RGYISIKASKDGILRQV----------------------------VPEYERL-------- 662 Query: 846 ATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ--- 891 A+E+ +W + S QK++DQA S N D PSGK ++ + + Sbjct: 663 KGAYEL--LWQMPSIEGYLQLVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLL 720 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+ G+KT YY +R + L+ V Sbjct: 721 AYKYGVKTLYYHNTRDGADDVQGDLEEV 748 >gi|71282068|ref|YP_269048.1| ribonucleotide-diphosphate reductase subunit alpha [Colwellia psychrerythraea 34H] gi|71147808|gb|AAZ28281.1| ribonucleoside-diphosphate reductase, alpha subunit [Colwellia psychrerythraea 34H] Length = 756 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 201/777 (25%), Positives = 337/777 (43%), Gaps = 83/777 (10%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ ++ A GL+ VS V +++ YDG+ D+ +I S+ LI +E P+Y Sbjct: 20 EKIHRVIAWAADGLEQVSVSQVELKSHIQFYDGIKTEDIHETIIKSAADLISEETPDYQY 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR + LR++ E LY ++ + +E G + L D Sbjct: 80 LAARLAVFHLRKKAYG----------QFEPPALY-DHVVKLVEAGKYDQHLLADYTKDDF 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK-ETEK 335 ++++ + + RD F Y ++ L +Y + ++G E Q ++ V+ L K E Sbjct: 129 EHMSSFMDHSRDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQFLYILVSACLFAKYPVES 188 Query: 336 EKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R VE FY+ +S F TP + +G R P Q SSC L D L I Sbjct: 189 RLRYVEDFYHAISRFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSAIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G IPF K + +QGG R GA + Sbjct: 247 YVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ L +R+ + TLFSP +V L+D Sbjct: 307 PLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGGSITLFSPSDVPGLYD 366 Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + ++FE Y YE + ++I A+ L+ TG ++ D CN Sbjct: 367 AFFEDQEKFERLYVQYENDDSIRK----KRIKAIELFTLFAQERASTGRIYLQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP + SNLC EI L N + E A+C L + NL A + D+ Sbjct: 423 HSPFDSSKAAIRQSNLCLEIALPTKPMNDINDENGEIALCTLSAFNLGAIDS-----LDE 477 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L AVR LD+++D + I A+ ++ R +G+G++ + L + Y++ A Sbjct: 478 LEGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIGVINYAYYLAKNGLYYSNGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E I F+ + A+ ELA+E+GA F +L +G+ PID+ + D++ Sbjct: 538 NLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKGILPIDT---YKKTIDDIT-GE 593 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 L W+ L++ +K G+RNS A+ P+ T + I + I+P + +K++ G Sbjct: 594 PLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIEPPRGLISIKASKDG--- 650 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 LKQ ++ + + G+ + IPD+ +E Sbjct: 651 --------VLKQ-------VVPEYEKLKGNYELLWNIPDN-------------QGYLELV 682 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWLMGLKTTYYLRSRSATS 910 QK++DQA S N D + +Q A+ +G+KT YY +R S Sbjct: 683 GIMQKFVDQAISANTNYDPNKFEGGKVPVKQILKDILTAYKLGVKTLYYHNTRDGAS 739 >gi|119774863|ref|YP_927603.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella amazonensis SB2B] gi|119767363|gb|ABL99933.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella amazonensis SB2B] Length = 782 Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 210/787 (26%), Positives = 348/787 (44%), Gaps = 105/787 (13%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ +V A GL++VS V ++ ++G+ + +I ++ LI E P+Y + Sbjct: 41 KIHRVVTWAAKGLKNVSVSEVELRSHLQFFEGIPTEAIHETIIKAAADLISPESPDYQFL 100 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ +P K H + +E G R + E +L Sbjct: 101 AARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLVEMGKYDRHILEDYTKEELD 149 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KETE 334 L + + + RD F Y ++ L +Y + + E Q ++ VA L KET Sbjct: 150 VLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACLFAGYPKET- 208 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 + K +FY+ +S+F TP + SG R P Q SSC L D L I Sbjct: 209 RLKYVKDFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 266 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 267 YVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 326 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ + L +R+ + TLFSP +V L+D Sbjct: 327 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENITLFSPSDVPGLYD 386 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + EFE Y YE++ + + + AV L+ M+ TG ++ D CN Sbjct: 387 AFFENQDEFERLYTKYEQEPSIRK----KSLKAVELFSLMMQERASTGRIYVQNVDHCNT 442 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V + SNLC EI L + ++ E A+C L ++NL A + ++ Sbjct: 443 HSPFDSSVAPIRQSNLCLEIALPTKPLDSVDDTNGEIALCTLSALNLGA-----IENLEE 497 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L AVR LD+++D + I+ AK + R +G+G++ F + L Y+ A Sbjct: 498 LEGLSDLAVRALDSLLDYQDYPIKAAKLGSMNRRTLGIGVINFANYLAKNGKKYSDGSAN 557 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMN 739 + ++ E I F+ + AS+ LA+E+GA +F + + QG+ PID+ L ++ DE Sbjct: 558 NLTHKTFEAIQFNLLKASMNLAKEKGACPAFHETTYSQGILPIDTYKRDLDKICDE---- 613 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 L W+ L+ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 614 -PLHLDWEGLRADIKHYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG-- 670 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +LKQ ++ D D+L+ A+E+ +W + S Sbjct: 671 ---------QLKQ-------VVPDF--------------DELR----NAYEL--LWQMPS 694 Query: 860 -------ASRRQKWIDQAQSLNLYLDEPS--GKKL-------DFIYRQAWLMGLKTTYYL 903 QK++DQA S N D G+K+ D + A+ +GLKT YY Sbjct: 695 NDGYLQLVGIMQKFVDQAISANTNYDPAKFEGRKVPMQLLLKDLL--TAYKLGLKTLYYH 752 Query: 904 RSRSATS 910 +R + Sbjct: 753 NTRDGAT 759 >gi|89092732|ref|ZP_01165685.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum sp. MED92] gi|89083244|gb|EAR62463.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum sp. MED92] Length = 754 Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 225/802 (28%), Positives = 337/802 (42%), Gaps = 103/802 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + +++ +V A GL VS V + + ++G+ D+ LI Sbjct: 5 LMVTKRDGRQEKLDLEKIHKVVIWAADGLNAVSPSEVELKAHLQFFEGMKTFDIHETLIK 64 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR+ ++ P+ H Q +E G Sbjct: 65 SAADLISEDAPDYQYLAARLAIFHLRKRAFGQ-FEPPRLFDHVSAQ----------VEAG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + L L ++RD F Y ++ L +Y + + G E PQ + Sbjct: 114 RYDKHLIEDYSEAEWETLNGYLDHKRDMNFSYSAVKQLEGKYLVQNRVTGEVYESPQILY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 M VA L + KE R FY+ S F TP + +G R P Q SSC L Sbjct: 174 MLVAACL-FADYPKETRLDYVKRFYDATSLFKLSLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINAT---SASIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++VE L L+ N G + R ++ I L R+ Sbjct: 288 AVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRK 548 + TLFSP EV L+D + EFE Y YE + RK I AV L+ Sbjct: 348 IKGGDITLFSPHEVPGLYDAFFADQDEFERLYVQYENDPN------IRKQTIKAVELFGI 401 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 + +TG +I D CN SP V V SNLC EI L N E A+ Sbjct: 402 LAAERAQTGRIYIQNVDHCNTHSPFDPTVAPVKQSNLCLEIALPTKPLQHVNDEEGEIAL 461 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A D D+L + VR LDN++D + I A S R +G+G Sbjct: 462 CTLSAFNLGA-----LEDLDELDNLADLIVRALDNLLDYQDYPIPAAHTSTMNRRPLGVG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + F L + Y+ A + ++ E + ++ + AS LA+ERG F +++ +G Sbjct: 517 VTNFAYYLAKNGVKYSDGSANGLVHKTFEAVQYYLLKASNALAKERGKCPKFDETVYSKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PID+ EV DE W+ L++ +K G+RNS A+ P T + I + Sbjct: 577 LLPIDTYK--REV-DEFCEEPLHYF-WETLREDIKEFGLRNSTLTALMPCETSSQITNST 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRD--LWDEAMISDLKYHDGSIGNIER 836 I+P + VK++ G VV + EL+++ LWD Sbjct: 633 NGIEPPRGYVSVKASKDGIMKQVVPGY--TELREQYELLWD------------------- 671 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFI 888 IP++ + QK++DQ+ S N D PS K+L Sbjct: 672 IPNNTGYLQLVGI-------------MQKFVDQSISANTNYD-PSLFPNDKVPMKQLLQD 717 Query: 889 YRQAWLMGLKTTYYLRSRSATS 910 A+ G+KT YY +R S Sbjct: 718 LLTAYKYGVKTLYYHNTRDGAS 739 >gi|326783481|ref|YP_004324016.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] gi|310004984|gb|ADO99374.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] Length = 769 Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 192/692 (27%), Positives = 313/692 (45%), Gaps = 46/692 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ G + ++ + E AC GL VS V +DG+ SD++ LI Sbjct: 7 EIHVIKRSGEKTPLDLDKIHAMAEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY V AR LL LR+ V H +C+ + ++ Sbjct: 67 RSANDLISLESPNYQFVAARLLLFSLRKAVYNGHPDGHPPLLEHVKKCVDLGVY----DD 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G+ ++ E L + + ++RD+ F Y G++ + D+Y + +G E PQ Sbjct: 123 GILSKYSKEEWEK-----LNSFMDHDRDYLFTYAGIRQVADKYLVQDRSSGEVYETPQFM 177 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M VA L ++ +K R ++Y+ +S TP + +G R P Q +SC L Sbjct: 178 YMMVAATL-FQDDDKFYRLEYVKKYYDAISKHRLNIPTPIM--AGVRTPLRQFASCVLVD 234 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L IF + G+G + +RG+ A I G + GVIPFLK T Sbjct: 235 VDDTLDSIFSSDMAIGHYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATV 294 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 Q G R G+ + WH ++++ + L+ N G + R ++ + LF +R Sbjct: 295 RCCTQNGIRGGSATVHFPIWHQEIQDIIVLKNNKGTEDNRVRKLDYSIQFSKLFYERFIS 354 Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 N +LFSP +V L+D +G + F+ Y +YE ++ + R+ I A L +L Sbjct: 355 NGIISLFSPHDVPGLYDAFGTDSFDSLYVDYE-----SDLSIPRQTIGAQELILSLLKER 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSIN 606 ETG +I D CN S + V+ SNLC EITL + E A+C L +IN Sbjct: 410 AETGRIYIMNIDHCNTHSSFKD--KVNMSNLCQEITLPTDPINHIDGLGEIALCILSAIN 467 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + D+L AVR LD +ID + ++ A+ S R++G+G +G Sbjct: 468 V-----GKLKSLDELDELCELAVRGLDALIDYQQYPVKAAENSTKNRRSLGIGFIGLAHY 522 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L Y S +A ++ + E + ++AS +A E+G F + + G+ PID+ Sbjct: 523 LAKHGANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTY 582 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 EV DE+ N S W+ L+ R+ G+R+S A P+ + + + + I+P Sbjct: 583 K--KEV-DEIVPNDLS-CDWEYLRGRIVEYGLRHSTLSAQMPSESSSVVSNATNGIEPPR 638 Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817 L VK + G +V S+ + LWD Sbjct: 639 DYLSVKKSKKGPLKQIVPSYTTLKGAYTLLWD 670 >gi|332290531|ref|YP_004421383.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium anatis UMN179] gi|330433427|gb|AEC18486.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium anatis UMN179] Length = 756 Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 215/796 (27%), Positives = 346/796 (43%), Gaps = 99/796 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L++ DG L N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LRVTKRDGRLEPINLDKIHRVITWAAEGLNNVSVSQVELRSHIQFYEGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI K+ P+Y + AR + LR++ H E LY E R + G Sbjct: 65 SAADLISKDTPDYQYLAARLAIFHLRKKAFG----------HFEPPRLY-EQVKRLVRMG 113 Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 + L+ S ++D + L + RD F Y ++ L +Y + + G E Q Sbjct: 114 KYDASLLVDYSREEWD--EMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171 Query: 320 FFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374 ++ VA L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 172 LYILVAASL-FAQYPKETRLNYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLI 228 Query: 375 TVPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 229 ECDDSLDSINAT---SAAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHF 285 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA Y WH++VE L L+ N G + R M+ + L + Sbjct: 286 QTAVKSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQ 345 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 R+ + A TLFSP +V L+ + ++FE Y YE+ D + R + A+ L+ Sbjct: 346 RLIKGADITLFSPSDVPGLYAAFFADQEKFEQLYLKYEQDPDIRK----RSVKAIELFSL 401 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 ++ TG +I D CN SP V V SNLC EI L + + E A+ Sbjct: 402 LMQERASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLQHIHDENGEIAL 461 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L + NL A NN D+L AVR LD ++D + ++ A+ RA+G+G Sbjct: 462 CTLSAFNLGA--LNN---LDELEDLADLAVRALDALLDYQNYPVKAAEIGAMGRRALGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 ++ + L + Y+ A ++ + E I ++ + AS +LA+E G F + + +G Sbjct: 517 VINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASNQLAKEFGPCKFFDETTYAKG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + PID+ +D ++ + W+ L+K ++ G+RNS A+ P+ T + I Sbjct: 577 ILPIDTYK-----KDVDSLTKEPLHYDWESLRKEIQEFGLRNSTLTALMPSETSSQISNA 631 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERI 837 + I+P + +K++ G V N + + LWD I Sbjct: 632 TNGIEPPRGFVSIKASKDGILRQVVPDYENLSENYELLWD-------------------I 672 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ-- 891 P++ +H A QK+IDQ+ S N D E + + + Sbjct: 673 PNNDGYLHLVAI-------------MQKFIDQSISANTNYDPQRFEDGKVPMKVLLKDLL 719 Query: 892 -AWLMGLKTTYYLRSR 906 A+ G+KT YY +R Sbjct: 720 TAYKYGVKTLYYQNTR 735 >gi|15602582|ref|NP_245654.1| ribonucleotide-diphosphate reductase subunit alpha [Pasteurella multocida subsp. multocida str. Pm70] gi|12721011|gb|AAK02801.1| NrdA [Pasteurella multocida subsp. multocida str. Pm70] Length = 756 Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 209/809 (25%), Positives = 344/809 (42%), Gaps = 94/809 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG L + ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGHLEPIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P+ H + +Y Sbjct: 65 AAADLISKDSPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKY-------- 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 A L+ + ++D + + L + RD F Y ++ L +Y + + G E Q + Sbjct: 116 DPALLVDYTREEWD--EMDSYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K + + + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASLFSKYPTETRLSYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 352 DITLFSPSDVPGLYEAFFADQDKFEQLYLQYEQDPTIRQ----RSVKAVELFSLLMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L + E A+C L + Sbjct: 408 STGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDEKGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + D+L AVR LD ++D + + AKKS+ R++G+G++ + Sbjct: 468 NL-----GTLENLDELEGLADLAVRALDALLDYQDYPVIAAKKSSLARRSLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A ++ + E I ++ + AS+ LA+E G F + + QG+ PID+ Sbjct: 523 YLAKNGVRYSDSSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYSQGILPIDT 582 Query: 726 IGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + ++ ++ P W+ L+K ++ G+RNS A+ P+ T + I + Sbjct: 583 Y--------KKDIDNLTKEPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I+P ++ VK++ G VV + LWD +P++ Sbjct: 635 IEPPRGHVSVKASKDGILKQVVPEYETLGENYELLWD-------------------LPNN 675 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAW 893 +H QK++DQA S N D + K+L A+ Sbjct: 676 DGYLHLVGI-------------MQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAY 722 Query: 894 LMGLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V++ G G Sbjct: 723 KYGLKTLYYQNTRDGAEDVQEDIDDGCSG 751 >gi|149911237|ref|ZP_01899860.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp. PE36] gi|149805691|gb|EDM65690.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp. PE36] Length = 757 Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 209/780 (26%), Positives = 333/780 (42%), Gaps = 89/780 (11%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ +++ A GL +VS +V +++ YDG+ D+ +I ++ LI +E P+Y Sbjct: 20 EKIHRVIKWAAKGLDNVSVSLVELKSHIQFYDGIRTEDIHETMIKAAADLISEEAPDYQY 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 ++AR + LR++ ++ P H + Y A LL + + + Sbjct: 80 LSARLAVFHLRKKAYGK-FEPPALYDHVKFNVDALRY---------DAHLLADYTAE-EF 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGL--ALKETE 334 + + + RD F Y ++ L +Y L I G E PQ ++ VA L ++ Sbjct: 129 AEMDEFVDHWRDMNFSYGAIKQLEGKYLLQNRITGEIFESPQFLYILVAASLFATYDKSV 188 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 + FY S+F TP + +G R P Q SSC L D L I Sbjct: 189 RMDYVRRFYEATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINAVSNSIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G IPF K + +QGG R GA + Sbjct: 247 YVSQRAGIGINAGRIRALGSSIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ + L +R+ N TLFSP +V L+D Sbjct: 307 PLWHLEVESLLVLKNNRGVEENRVRHLDYGVQLNRLMYQRLIDNKDITLFSPSDVDGLYD 366 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPC 567 + + EFE Y YE+ RK I A L+ ++ TG +I D C Sbjct: 367 AFFQDQDEFERLYNLYEQDPS------IRKQTIKASELFALLMQERASTGRIYIQNVDHC 420 Query: 568 NIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDY 618 N SP V + SNLC EI L E A+C L + NL A D Sbjct: 421 NTHSPFDPAVAPIRQSNLCLEIALPTKPMQHPGDEDGEIALCTLSAFNLGA-----IKDL 475 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +L + AVR LD+++D + + A+KS R++G+G++ + L + Y+ Sbjct: 476 SELENLSDLAVRALDSLLDYQDYPMPAAEKSTMARRSLGIGVINYAYYLAKNGVKYSDGS 535 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA 737 A + + E I F+ + AS+ L++ERG +F + + QG+ PID+ L E+ DE Sbjct: 536 ANNLTHRTFEAIQFYLLKASMNLSKERGPCLAFHETTYAQGILPIDTYKSSLDEICDE-- 593 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 L W+ L+ +K G+RNS A+ P+ T + I + I+P + +K++ G Sbjct: 594 ---ALHLDWETLRSEIKEHGLRNSTLTALMPSETSSQISNATNGIEPPRGLISIKASKDG 650 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 LKQ ++ D + S + IP + + Sbjct: 651 -----------ILKQ-------VVPDYENLRDSYELLWNIPSNTGYLQLVGL-------- 684 Query: 858 ESASRRQKWIDQAQSLNLYLDEP--SGKKLDFIYRQAWLM-----GLKTTYYLRSRSATS 910 QK++DQA S N D G+K+ LM GLKT YY +R S Sbjct: 685 -----MQKFVDQAISANTNYDPQRFPGQKVPMTTLLTDLMLAYKYGLKTLYYHNTRDGAS 739 >gi|257215692|emb|CAX82998.1| ribonucleotide reductase M1 [Schistosoma japonicum] Length = 384 Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 200/380 (52%), Gaps = 33/380 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 K+ ++ DG + + +++ + C GL + + V +Y G++ +L+ Sbjct: 16 KIYVVKRDGRSEAIHCEKITKRIRALCYGLNESYIDVDAVTKRVVSGLYPGVTTVELDNL 75 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV---------YKKPQKATHHEMQCLY 252 + ++I K YA + AR + L +E + Y P+ H L Sbjct: 76 AAETCASMITKHHEYAILAARLAVSNLHKETKSRFSDVVEDLYGYINPRTKKH---SPLV 132 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E ++ E + L N + Y+RD+ + Y G + L Y L ING Sbjct: 133 SEDLRNFVRENAER--------------LDNAIDYQRDYTYNYFGFKTLERSYLLKINGK 178 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRV++G+ + E A+E YNL+S F ++PTLFNSGT PQLSSCF Sbjct: 179 VHERPQHMLMRVSVGIHTSDIES---AIETYNLMSEKWFTHASPTLFNSGTPKPQLSSCF 235 Query: 373 LTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ DD + GI+ L+E A+++K +GG+G + +R LG +I GTNG+S G++P L+V Sbjct: 236 LITMKDDSIEGIYDTLKECAIISKNAGGIGVNVHNIRSLGTYIAGTNGESNGLVPMLRVF 295 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N TA V+QGG KR GA YLE WH DV +F+++RKNTG + R D+ A WIPDLFM Sbjct: 296 NSTARYVDQGGNKRPGAFAIYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFM 355 Query: 491 KRVTQNAGWTLFSPDEVSDL 510 +RV N WTL P E + Sbjct: 356 RRVESNDKWTLMDPHECPSI 375 >gi|301058132|ref|ZP_07199184.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [delta proteobacterium NaphS2] gi|300447764|gb|EFK11477.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [delta proteobacterium NaphS2] Length = 830 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 172/591 (29%), Positives = 267/591 (45%), Gaps = 80/591 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET----EKEKRAVE--FYNLLSSFH 350 +++L RY G IE P+ F RVA +A E E + VE FY L++ F Sbjct: 104 VRVLERRYLRQDKEGRAIETPEEMFARVAHHIAQAEKRYGGEDRIKDVEAVFYRLMTEFK 163 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QL++CF+ V D + GIF +L+ A++ K GG G ++ +R Sbjct: 164 FLPNSPTLMNAGRELGQLAACFVLPVEDSMDGIFDSLKNAALIHKSGGGTGFSFSRLRPK 223 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + + T G + G + F+K+ N V QGG R+GA A L H D+ EF+D +KN Sbjct: 224 KSRVGTTGGIASGPVSFMKIFNTATEQVKQGGTRRGANMAILRVDHPDILEFIDCKKNN- 282 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 ++ N + + D FM+ V + + L P L KE Sbjct: 283 ---EELNNFNISVGVTDAFMESVKADTNYDLIDPRNGRKTGQLNAKE------------- 326 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 ++ ++ +E G P I F D N +P +G + S+N C E L Sbjct: 327 --------------VYDALIQRAWENGDPGIVFLDKVNQDNPTPGLGEIESTNPCGEQPL 372 Query: 591 NSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 CNLGSINL + DY L +R +V LDN ID++ + + + Sbjct: 373 LP----MEACNLGSINLAKFVVDTDEGPAVDYAGLKEVVRESVHFLDNTIDMSRYPLPEI 428 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + +R IGLG+MGF L+ L IPY S +A+E A+ M F+ + AS +LA+ERG Sbjct: 429 GEMVRGNRKIGLGVMGFADLLYQLRIPYDSEKALETAEAVMGFVQEASHQASRQLAEERG 488 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + +F D+ VF KR K RN+ I Sbjct: 489 VFGNF-----DKSVF-----------------------------KRRKDCSYRNATTTTI 514 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT T++ I G S I+P + + ++ M D V + E ++ + + + D+ Sbjct: 515 APTGTLSIIAGCSSGIEPLFALSFARNVMDNDRLVETNPYFEETAKKKGYFSSELMDIVA 574 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 G+I NI IP + + + TA +I P W + + Q+ D A S + L Sbjct: 575 QKGTIHNINEIPAEDRAVFVTAHDIVPEWHLRMQAAFQRHTDNAVSKTVNL 625 >gi|260582635|ref|ZP_05850424.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae NT127] gi|260094307|gb|EEW78206.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae NT127] Length = 756 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 204/792 (25%), Positives = 337/792 (42%), Gaps = 87/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ +K++ G V N + + LWD IP + Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896 +H QK++DQA S N D E + + + A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725 Query: 897 LKTTYYLRSRSA 908 LKT YY +R Sbjct: 726 LKTLYYQNTRDG 737 >gi|148978905|ref|ZP_01815225.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales bacterium SWAT-3] gi|145962103|gb|EDK27389.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales bacterium SWAT-3] Length = 760 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 214/790 (27%), Positives = 337/790 (42%), Gaps = 81/790 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H +Y +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYGE-YEPPALYDHVAKLVDMGKYDSHLMED 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 KA +FD L + + ++RD F Y ++ L +YF+ + E Q Sbjct: 123 YTKA--------EFD--ELDSYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K ++ + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + + E E Y + + IK + AV L+ ++ T Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEELYVKYENDPSIKR-ETVKAVELFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINL 607 G +I D CN SP V V SNLC EI L + E A+C L + NL Sbjct: 410 GRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A N+ D LA VR LD ++D + + A KS R +G+G++ + L Sbjct: 470 ---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ Sbjct: 525 AKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYK 584 Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 +D +L + WD L++ + G+RNS A+ P+ T + I + I+P Sbjct: 585 -----KDIDLVCDEPLHYDWDALREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPR 639 Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + VK++ G VV FL + LW ++ +DG +H Sbjct: 640 GYVSVKASKDGILKQVVPDFLNLKENYELLW------NIGSNDGY-------------LH 680 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGLK 898 QK++DQA S N D SG KKL A+ G+K Sbjct: 681 LVGI-------------MQKFVDQAISANTNYDPSVYDSGKVPMKKLLQDLLTAYKFGVK 727 Query: 899 TTYYLRSRSA 908 T YY +R Sbjct: 728 TLYYHNTRDG 737 >gi|15642893|ref|NP_227934.1| ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8] gi|4980610|gb|AAD35212.1|AE001698_1 ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8] gi|2440216|emb|CAA73377.1| ribonucleotide reductase [Thermotoga maritima MSB8] Length = 827 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 197/676 (29%), Positives = 317/676 (46%), Gaps = 109/676 (16%) Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345 IL DRYF+ ++G+ +E + + + K+ EK R E F+ + Sbjct: 22 ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRV 81 Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378 L + F+ ++PTLFN+G +H LS+CF+ V D Sbjct: 82 LKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + IF A++E A++ K GG+G++++ +R G+ + GT+GK+ G + F+ V N V Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG +R+GA+ L H D+EEF+D +K NT + + F + G Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 + P + ++ LY ++ E+ E R I+ +K+ L+RK+ T +++G Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617 P + F N P ++S+N C EI L+ + CNLGSI++ A F NN F D Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + L ++ AVR LDNVID+N I+K K+ R +GLG+MGF L+ L IPY S Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733 EA + A M FI+ HA S EL +E+G + + S + D V F + E+R Sbjct: 411 EARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + M + R RN + IAPT +I+NI S ++P++ Y + Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 D T VN++ + L E + I GS+ +I +P+ +KK+ A +I Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575 Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLDE-PSGKKLDFIYRQAWLMG 896 DPM L++ A +R K I+ QS LN+YL+ + + +YR L Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQT 635 Query: 897 LKTTYYLRSRSATSVE 912 T L++ A V+ Sbjct: 636 QVLTKALKTPEAPKVQ 651 >gi|28898708|ref|NP_798313.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio parahaemolyticus RIMD 2210633] gi|153839544|ref|ZP_01992211.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|260363693|ref|ZP_05776477.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus K5030] gi|260879740|ref|ZP_05892095.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260898786|ref|ZP_05907227.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901599|ref|ZP_05909994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|28806926|dbj|BAC60197.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746925|gb|EDM57913.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|308086602|gb|EFO36297.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308093358|gb|EFO43053.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108672|gb|EFO46212.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308113387|gb|EFO50927.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus K5030] gi|328474727|gb|EGF45532.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio parahaemolyticus 10329] Length = 760 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 211/795 (26%), Positives = 340/795 (42%), Gaps = 91/795 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLDKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFDH----------VSRLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L + + ++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYSKAELDELDSYIDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V+ L KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + +EFE Y YE + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDPSVKK----ETVKAIEMFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ F Sbjct: 466 AFNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + ++ + ASV LA+E+G SF + + +G+ PI Sbjct: 521 AYYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L + WD L++ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLICDEELHYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F ELK + ++ ++ +DG Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEF--TELKN----NYELLWNIGSNDGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PS KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSA 908 G+KT YY +R Sbjct: 723 KFGVKTLYYHNTRDG 737 >gi|319776093|ref|YP_004138581.1| ribonucleoside-diphosphate reductase subunit alpha [Haemophilus influenzae F3047] gi|317450684|emb|CBY86904.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae F3047] Length = 756 Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 88/806 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P + H + + E + + + + Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R ++M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASGIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ +K++ G V N + + LWD IP + Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896 +H QK++DQA S N D E + + + A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725 Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921 LKT YY +R A V++ G G Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|22536603|ref|NP_687454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae 2603V/R] gi|76798640|ref|ZP_00780866.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 18RS21] gi|77407709|ref|ZP_00784464.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] gi|22533440|gb|AAM99326.1|AE014211_3 ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 2603V/R] gi|76586005|gb|EAO62537.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 18RS21] gi|77173708|gb|EAO76822.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] Length = 721 Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 186/657 (28%), Positives = 309/657 (47%), Gaps = 86/657 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y + FAF ++G Y+ Y L +R + + + RV M EK A + + Sbjct: 84 YAKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + F +TPT N+G R + SC+L + D++ I A+ + L+K GG+ Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522 ++ D++ R ++ IPD+ + N LFSP D+ +YGK +I+ Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319 Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E YE +I K F ISA L++ + + FE+G+P+I F+D N ++P + G + Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377 Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N++S+ CNLGSIN +A + D++KL I ++ Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + + KK N + A+GLG M L HI Y S EA++ D Sbjct: 434 RALDRVSRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736 ++++A AS LA+E+G + F S + G + LLA E Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + S+ W +L + +K IG+ N++ +A+APT +I+ + + S+ P Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850 +V+ ++ R +G++G + +P D+ A+E Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + +I A+ QK IDQA SL L++ D+ + + L+ Y QA+ + YY+R R Sbjct: 635 VGSEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691 >gi|300723736|ref|YP_003713043.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus nematophila ATCC 19061] gi|297630260|emb|CBJ90911.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus nematophila ATCC 19061] Length = 763 Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 220/811 (27%), Positives = 348/811 (42%), Gaps = 103/811 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +V A GL++VS V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ E LY + R ++ G Sbjct: 65 AAADLISGDAPDYQYLAARLAIFNLRKKAYG----------QFEPPALY-NHVVRMVDLG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSKEEFEQMDSFINHLRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSNYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQAD-RGEIKVFRKISAVALWRKMLTM 552 +LFSP +V L+D + EFE Y YE ++ R E +I AV L+ M+ Sbjct: 351 EDISLFSPSDVPGLYDAFFADQDEFERLYTQYENDSNIRKE-----RIRAVELFSLMMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V V SNLC EI L N + E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A D +L AVR LD+++D + I A++ + R +G+G++ F Sbjct: 466 AFNLGA-----IEDLTELEELAELAVRALDSLLDYQDYPIIAAQQGSMGRRTLGIGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ PI Sbjct: 521 AYYLAKNGVRYSDSSANNLTHKTFEAIQYYLLKASNELAKERGACPWFGETTYSQGLLPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D L+ + + W+ L++ +K G+RNS A+ P+ T + I + I+ Sbjct: 581 DT---YKKTLDTLS-SEPLHMDWEALRRDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLK 842 P + VK++ G V +PD DL Sbjct: 637 PPRGYISVKASKDGILRQV----------------------------------VPDYDLL 662 Query: 843 KIHATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ 891 K A+E+ +W + S QK+IDQ+ S N D P+GK ++ + + Sbjct: 663 K---GAYEL--LWQMPSNNGYLQLVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKD 717 Query: 892 ---AWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+ G+KT YY +R + L+ V Sbjct: 718 LLLAYKYGVKTLYYHNTRDGAEDVQGDLEEV 748 >gi|218778781|ref|YP_002430099.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfatibacillum alkenivorans AK-01] gi|218760165|gb|ACL02631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfatibacillum alkenivorans AK-01] Length = 724 Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 175/626 (27%), Positives = 288/626 (46%), Gaps = 79/626 (12%) Query: 291 FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343 +F L +L RY NG IE P+ RVA +A + + ++ A +FY Sbjct: 3 LSFSSSALVVLKKRYLKKDKNGRVIESPEKMLQRVADSVARADKDYDETADIQALAAQFY 62 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +L+S F+ ++PTL N+G R QLS+CF+ V D + IF +L+ AM+ K GG G Sbjct: 63 DLMSKGWFIPNSPTLMNAGRRLGQLSACFVLPVEDSIESIFDSLKHTAMIHKSGGGTGFS 122 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ VR + T G S G I F+ V + V QGG R+GA A L H D+EEF+ Sbjct: 123 FSRVRPANDKVLSTAGVSSGPISFMAVFDAATETVKQGGTRRGANMAILRVDHPDIEEFI 182 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + DD + N + + FM+ + + + L +P Sbjct: 183 ACK----DDPAFLQNFNISVGLTQEFMEALEKGGDYELVNPR------------------ 220 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 R +K ++A ++ ++ +++G P I F D N +P +G + ++N Sbjct: 221 ------TRNSVKT---LNAPKIFDMIVNSAWQSGEPGIIFLDRINEANPTPALGEIEATN 271 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C E L CNLGSINL + D D+L + I TAV LDNV++IN + + Sbjct: 272 PCGEQPLLPYES----CNLGSINLGKMAEGGKLDKDRLKAVIHTAVHFLDNVVEINKYPL 327 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ K+ R +GLG+MGF L L +PY S EAV +A E M IS + AS +L + Sbjct: 328 KEIKEQTLATRKVGLGVMGFADLLIKLGVPYDSEEAVAMAHEVMSLISEESKKASAQLGE 387 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 RG + ++ GS++D + +T MRN+ Sbjct: 388 ARGNFPAYAGSMYD----------------------------------KPETPHMRNATT 413 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMIS 822 +APT TI+ I S I+P + Y + + G+ L E+ K++ + E + Sbjct: 414 TTLAPTGTISIIANASSGIEPIFAVAYTRRVLDGERLHEFHPLFEEMAKEQGFFTEDLAK 473 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 ++ +GSI + IP +++++ T+ +I P W + + QK+ D A S + + Sbjct: 474 NIAL-EGSIQEMTNIPKEVRRLFKTSHDISPEWHVRIQAAFQKYTDNAVSKTVNFPHSAT 532 Query: 883 KK-LDFIYRQAWLMGLKTTYYLRSRS 907 ++ ++ +++ A G K R S Sbjct: 533 REDVEKVFKLARETGCKGVTIYRDGS 558 >gi|163803512|ref|ZP_02197382.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. AND4] gi|159172688|gb|EDP57539.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. AND4] Length = 760 Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 212/795 (26%), Positives = 342/795 (43%), Gaps = 91/795 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y + + T H+ + R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + + E +L L L+++RD F Y ++ L +YF+ ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLEHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V+ L KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + L L+ N G + R M+ + L +R+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP + L+D + +EFE Y YE + + A+ ++ ++ Sbjct: 350 GGNITLFSPSDAPGLYDAFFENQEEFERLYVKYENDPSVKK----ETVKAIEMFTLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + S E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+++L+ + VR LD ++D + + A KS R +G+G++ F Sbjct: 466 AFNLGA--IKSLDDFEELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + ASV LA+E+G F + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVMLAKEQGKCPLFDETNYAKGLLPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L + W L++ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDVDLICDEKLHYDWGTLRQEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV F ELK D ++ ++ ++G Sbjct: 636 EPPRGFVSVKASKDGILKQVVPDFA--ELKN----DYELLWNIGSNEGY----------- 678 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893 +H QK++DQA S N D PSG KKL A+ Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSGYDSGKVPMKKLLQDLLTAY 722 Query: 894 LMGLKTTYYLRSRSA 908 G+KT YY +R Sbjct: 723 KFGVKTLYYHNTRDG 737 >gi|317154786|ref|YP_004122834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio aespoeensis Aspo-2] gi|316945037|gb|ADU64088.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio aespoeensis Aspo-2] Length = 748 Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 176/612 (28%), Positives = 297/612 (48%), Gaps = 87/612 (14%) Query: 315 EMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 E + F RVA +A +E + + A +FY+L++S+ F+ ++PTL N+GT Q Sbjct: 38 ETVKELFWRVASAIAAEEAKYDGSSCKPATLARDFYDLMTSYSFLPNSPTLMNAGTGLGQ 97 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L++CF+ V D + IF A++ AM+ K GG G ++ +R + + T G + G + F Sbjct: 98 LAACFVLPVADSIEDIFDAVKHAAMIHKSGGGTGFSFSRLRAKDSVVGSTGGVASGPLSF 157 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 L++ N + QGG R+GA L H D+ EF+ ++ G+ ++ N + + + Sbjct: 158 LRIFNCATEQIKQGGTRRGANMGILRVDHPDIMEFIKAKERDGE----LNNFNLSIGLTE 213 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FM+ V +N + L +P+ +V K++A ++ Sbjct: 214 AFMRAVEKNEEFDLMAPNSG---------------------------QVVEKLNAREVFN 246 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 ++ +E+G P I F D N +P +G + S+N C E L CNLGSINL Sbjct: 247 LLVQKAWESGDPGIVFLDRINRDNPTPALGEIESTNPCGEQPLLPYE----ACNLGSINL 302 Query: 608 LAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 +A +++ ++D+L I +VR LDNVID + + + + + +R IGLG+M Sbjct: 303 GKCYAKGKNGHDSEVNWDELRRIIHLSVRFLDNVIDASVYPLSEITEMVGKNRKIGLGVM 362 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G+ L L I Y S AV++A+ M+F+ A SAS +LA ERG + ++ + VF Sbjct: 363 GWADLLFQLDIAYNSQTAVDLAERVMKFMRDEARSASKQLAAERGPFPAYA-----ESVF 417 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++G P+ RN+ IAPT T++ I G S Sbjct: 418 GKANLG-----------------PY------------RNATTTTIAPTGTLSIIGGCSSG 448 Query: 782 IDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 ++P + +V++ M D V N F LKQ D + ++ ++ G+I +E +P D Sbjct: 449 VEPLFALSFVRNVMDNDKLVESNPFFETALKQADAYSPKLMEEIA-KVGTIRKMEHLPHD 507 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLK 898 L++++ TA +I+P+W ++ + QK+ D A S + L S + D IY +A+ G K Sbjct: 508 LRRVYVTAMDIEPIWHLKMQAAFQKYTDNAVSKTVNLPG-SATREDIWDIYWKAYEYGCK 566 Query: 899 TTYYLRSRSATS 910 R S TS Sbjct: 567 GVTVYRDGSKTS 578 >gi|163748932|ref|ZP_02156183.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella benthica KT99] gi|161331308|gb|EDQ02196.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella benthica KT99] Length = 762 Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 205/804 (25%), Positives = 353/804 (43%), Gaps = 87/804 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ G + + +++ ++ A L++VS V ++ +DG+ + +I Sbjct: 5 MKVTKRSGKRENIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ E LY ++ + ++ G Sbjct: 65 AAADLISLEAPDYQFLSARLAIFHLRKKAFG----------QFEPPALY-DHVVKLVKAG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + E +L L + + RD +F Y ++ L +Y + + E Q + Sbjct: 114 KYDKHILEDYSREELDILDTYVDHWRDMSFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + + FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G +PF K + Sbjct: 232 DSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + EFE Y YE A + +I A L+ M+ Sbjct: 352 MISLFSPSDVPGLYDAFFADQDEFERLYLQYEADASVRKT----QIKATELFSLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V + SNLC EI L + E A+C L ++ Sbjct: 408 STGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSAL 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A D +L AVR LD+++D + I+ A+KS+ R +G+G++ F Sbjct: 468 NLGA-----IKDLSELEPLADLAVRALDSLLDYQDYPIKAARKSSMNRRTLGIGVINFAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A I + E I ++ + AS+ LA+E GA SF + + +G+ PID+ Sbjct: 523 YLAKEGVRYSDGSANNITHRTFEAIQYYLLKASMNLAKEHGACPSFHETTYSKGILPIDT 582 Query: 726 IGL-LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 L ++ DE L M+ W+ L++ + G+RNS A+ P+ T + I + I+ Sbjct: 583 YKRSLDKICDEPLHMD------WETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VKS+ G +LKQ ++ D + + S + ++P++ Sbjct: 637 PPRGLISVKSSKDG-----------QLKQ-------VVPDFEKYQHSYELLWQMPNNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWLMG 896 + QK++DQA S N D E + + + + A+ +G Sbjct: 679 LQLVGL-------------MQKFVDQAISANTNYDPGRFEGNKVPMQVLLKDLLNAYKLG 725 Query: 897 LKTTYYLRSRSATSVEKSTLKGVD 920 LKT YY +R S + ++ V+ Sbjct: 726 LKTLYYHNTRDGASDQMDSIISVE 749 >gi|148653375|ref|YP_001280468.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter sp. PRwf-1] gi|148572459|gb|ABQ94518.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychrobacter sp. PRwf-1] Length = 758 Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 198/792 (25%), Positives = 345/792 (43%), Gaps = 83/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+M DG L + ++ ++ A GL +VS V +++ YDG+ D+ +I Sbjct: 7 IKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H + E G Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYNQFEPPHLFDH----------VTKLTEAG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + + + L + + + RD Y + + +Y + + + E PQ + Sbjct: 116 KYDQHILQDYSREEFDELNDYIDHWRDMNLAYAAAEQMAGKYLVQDRVTKTVYESPQFLY 175 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + V M L + ++E+ FY+ S+F TP + SG R P Q SSC L Sbjct: 176 VLVGMCLFASYDKSERMHYVKRFYDAASTFKISLPTPIM--SGVRTPSRQFSSCVLIECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRPLYTRLIKGE 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP +V L++ + +FE Y YE+ + + R + A L+ ++ Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEALYTKYEKDDNIRK----RHVPAADLFSLLMQERA 409 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V + SNLC EI L N E A+C L ++ Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLSAV 469 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL ++ D ++ A I VR LD ++D + ++ A+ + R +G+G++ + Sbjct: 470 NLGE--VDSLEDIEEPAELI---VRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAY 524 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L Y+ A+ + ++ E + ++ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 525 YLAKNGTRYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDT 584 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + N RL W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 585 Y----KADLDKVCNEPLRLDWEALRQEIKTHGLRNSTLSALMPSETSSQIANATNGIEPP 640 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + VK++ G LKQ ++ D+ G+ + ++P++ + Sbjct: 641 RGLVSVKASKDG-----------ILKQ-------VVPDILNLKGNYELLWQMPNNDGYLK 682 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLK 898 A QK+IDQ+ S N D E + + + + A+ +G+K Sbjct: 683 LVAV-------------MQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVK 729 Query: 899 TTYYLRSRSATS 910 T YY +R + Sbjct: 730 TLYYHNTRDGAN 741 >gi|27904670|ref|NP_777796.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38605262|sp|Q89AS4|RIR1_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|27904067|gb|AAO26901.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 761 Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 211/792 (26%), Positives = 351/792 (44%), Gaps = 95/792 (11%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 +G + N ++ ++ A GL+++S V ++ Y+ + + + +I ++ LI Sbjct: 11 NGKIELINLDKIHRVLNWAAKGLENISISQVALKSRIQFYNNIKTTIIHETIIKAAADLI 70 Query: 211 -EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 E P+Y + AR + LR++ + P H + +Y + + K Sbjct: 71 SENSPDYQYMAARLTIFHLRKKAFGQ-FNPPNLYDHVKNMIKLEKYDQHLLNDYPKQ--- 126 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 D + + + +K+ RD F Y ++ L +Y + ++ A F+ + + Sbjct: 127 -------DFLIMNSFIKHRRDMNFSYAAVKQLEGKYLIQNRVTKKIYESAQFLYILISAC 179 Query: 330 L-----KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYG 382 L ET + K FY+ +S+F TP + +G R P Q SSC L D+L Sbjct: 180 LFSKYPNET-RMKYIKNFYDAISTFKISLPTPIM--AGLRTPTRQFSSCVLIESEDNLNS 236 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I G+G + +R LG+ I + G IPF K + +QGG Sbjct: 237 INATTSAIVKYVSQRAGIGINAGRIRALGSPIRNGDTLHTGCIPFYKHFQSAVKSCSQGG 296 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R GA + WH ++E L L+ N G + R M+ + + L +R+ TLF Sbjct: 297 VRGGAATIFYPIWHFEIESLLVLKNNRGIEENRVRHMDYSVQLNKLMYQRLILGEHITLF 356 Query: 503 SPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 SP +V +L+D + ++FE Y YE D+ K +K+ A L+ M+ TG Sbjct: 357 SPSDVPNLYDSFFNNQEKFERLYIKYEN--DKTIRK--KKVKASYLFSLMMQERTSTGRI 412 Query: 560 WITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAH 610 +I D CN S + + SNLC EITL + + E ++C L +INL + Sbjct: 413 YIQNVDHCNSHSAFNPKIAPIRQSNLCLEITLPTKALQDVHDKNGEISLCTLSAINLGS- 471 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 NN D KL++ I VR LD+V+D + I AKKS + R +G+G++ F L Sbjct: 472 -LNNLNDLSKLSNLI---VRALDSVLDYQEYPILSAKKSALSRRTLGIGVINFAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + + E I +H ++AS LAQE+GA F + + +G+ PID+ Sbjct: 528 GVRYSDGSANNLTHRTFEAIQYHLLNASCVLAQEKGACHWFSHTNYYKGILPIDT---YK 584 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + DE+ N L W+ L+K++K G+RNS A+ P+ T + I + I+P + Sbjct: 585 KNVDEIC-NEPLHLDWELLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGLIS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRD-----LWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 +K++ G V V E K+ LW+ IP++ Sbjct: 644 IKASKDGMLRQV----VPEYKRLKNNYELLWN-------------------IPNN----- 675 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLK 898 T + ++ AS QK++DQ+ S N D P+ K +L A+ +GLK Sbjct: 676 -TGY-------LQLASIMQKFVDQSISANTNYDPKLFPNNKIPMQQLILDLLTAYKLGLK 727 Query: 899 TTYYLRSRSATS 910 T YY +R S Sbjct: 728 TLYYQNTRDGAS 739 >gi|268591163|ref|ZP_06125384.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] gi|291313389|gb|EFE53842.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] Length = 763 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 189/675 (28%), Positives = 300/675 (44%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL +VS V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ E LY ++ +E G Sbjct: 65 AAADLITGDTPDYQYLAARLAIFNLRKKAYG----------QFEPPALY-KHVKHLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSEAEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSHYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 291 SCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKN 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551 TLFSP +V L+D + EFE Y YE+ + RK + AV L+ M+ Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDEN------IRKSSVKAVELFSLMMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG +I D CN SP + V SNLC EI L N + E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNINDENGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL A + D+L AVR LD ++D + I AK+ + R +G+G++ Sbjct: 465 SAFNLGAIDS-----LDELEELAILAVRALDALLDYQDYPIIAAKQGSMGRRTLGIGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV P Sbjct: 520 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLP 579 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + D+L N W+ L++ +K G+RNS A+ P+ T + I + I Sbjct: 580 IDT---YKKELDKLT-NEPLHYDWEALRQEIKQHGLRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSG 797 +P + +K++ G Sbjct: 636 EPPRGYISIKASKDG 650 >gi|301170417|emb|CBW30023.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus influenzae 10810] Length = 756 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 207/806 (25%), Positives = 341/806 (42%), Gaps = 88/806 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ H + LY ++ + + G Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKLVRIG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ +K++ G V N + + LWD IP + Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896 +H QK++DQA S N D E + + + A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725 Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921 LKT YY +R A V++ G G Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751 >gi|307353248|ref|YP_003894299.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase [Methanoplanus petrolearius DSM 11571] gi|307156481|gb|ADN35861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoplanus petrolearius DSM 11571] Length = 722 Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 175/606 (28%), Positives = 277/606 (45%), Gaps = 99/606 (16%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVA LA E ++E FY ++S F+ ++PTL N+GT QLS+CF VPD + G Sbjct: 29 RVASALASDEKDREL----FYEAMTSLRFLPNSPTLMNAGTEIGQLSACFTLPVPDSIPG 84 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF A+++ A++ K GG G +++ +R G+ + T+G + G + F+K N + QGG Sbjct: 85 IFDAMKQGAVIHKTGGGTGYNFSHIRAEGSPVRSTDGVASGPVSFMKAFNAATDVIKQGG 144 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R+GA L WH D+ F+ +K G + N + + D FM V Sbjct: 145 RRRGANMGILNVWHPDILSFITSKKEEGS----ISNFNISVMVNDEFMTLVRDR------ 194 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 DE+ H + G K++ +W ++ +++ G P + Sbjct: 195 KFDEIWIKHPVTGV----------------------KVTVGEIWNGIVDGIWKNGEPGVL 232 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 F D N +P +G + +N C E L C LGSINL A +FD + L Sbjct: 233 FYDEINRHNPTPGLGDIDITNPCGEQPLLPFES----CVLGSINLAACINEGKFDEELLD 288 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T+R AVR L+NVID N + I + +++ R IGLG+MG AL +L IPY SP + Sbjct: 289 DTVRMAVRFLNNVIDANVYPIPEIEEATKKTRKIGLGVMGVHDALLMLKIPYDSPGGRKW 348 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 E M I+ A+ S LA++ G + ++ S W Sbjct: 349 CGEIMHRITETAVEESQLLAEKLGTFPEWEKSTW-------------------------- 382 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801 K+R +RN+ +APT TI+ + G S I+P + Y + N G F + Sbjct: 383 -------KER----KVRNAAMTTVAPTGTISLLAGCSSGIEPVFSFAYTRMNTVGKTFFI 431 Query: 802 VNSFLV--------------NELKQRDLWDEAMISDLKYHD-GSIGNIERIPDDLKKIHA 846 V+ +ELK+R +E +I+ + HD GSI ++E +P D + + Sbjct: 432 VSPVFKEALHSTLSEKGHSGDELKKR---EEEVIAHV--HDTGSIQDLEWLPADFRSLFK 486 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRS 905 TA +I IE + QK++ + S + + + +K + AW +GLK R+ Sbjct: 487 TALDISYRDHIEMQAVFQKYVHASISKTINMPNSAERKDCEEALLAAWTLGLKGITIYRT 546 Query: 906 RSATSV 911 S SV Sbjct: 547 GSRDSV 552 >gi|218709926|ref|YP_002417547.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio splendidus LGP32] gi|218322945|emb|CAV19122.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio splendidus LGP32] Length = 760 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 214/790 (27%), Positives = 336/790 (42%), Gaps = 81/790 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H +Y +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYGE-YEPPALYDHVTKLVDMGKYDSHLMED 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 KA +FD L + ++RD F Y ++ L +YF+ + E Q Sbjct: 123 YTKA--------EFD--ELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K ++ + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + + E E Y + + +K + AV L+ ++ T Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEELYVKYENDPSVKR-ETVKAVELFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINL 607 G +I D CN SP V V SNLC EI L + E A+C L + NL Sbjct: 410 GRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A N+ D LA VR LD ++D + + A KS R +G+G++ + L Sbjct: 470 ---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ Sbjct: 525 AKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYK 584 Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 +D +L WD L++ + G+RNS A+ P+ T + I + I+P Sbjct: 585 -----KDIDLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPR 639 Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + VK++ G VV FL + LW+ IGN + +H Sbjct: 640 GYVSVKASKDGILKQVVPDFLNLKNNYELLWN-------------IGNNDGY------LH 680 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGLK 898 QK++DQA S N D SG K+L A+ G+K Sbjct: 681 LVGI-------------MQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVK 727 Query: 899 TTYYLRSRSA 908 T YY +R Sbjct: 728 TLYYHNTRDG 737 >gi|86148465|ref|ZP_01066755.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] gi|85833762|gb|EAQ51930.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] Length = 760 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 214/790 (27%), Positives = 336/790 (42%), Gaps = 81/790 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H +Y +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYGE-YEPPALYDHVAKLVDMGKYDSHLMED 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 KA +FD L + ++RD F Y ++ L +YF+ + E Q Sbjct: 123 YTKA--------EFD--ELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K ++ + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + + E E Y + + +K + AV L+ ++ T Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEELYVKYENDPSVKR-ETVKAVELFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINL 607 G +I D CN SP V V SNLC EI L + E A+C L + NL Sbjct: 410 GRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A N+ D LA VR LD ++D + + A KS R +G+G++ + L Sbjct: 470 ---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ Sbjct: 525 AKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYK 584 Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 +D +L WD L++ + G+RNS A+ P+ T + I + I+P Sbjct: 585 -----KDIDLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPR 639 Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + VK++ G VV FL + LW+ IGN + +H Sbjct: 640 GYVSVKASKDGILKQVVPDFLNLKNNYELLWN-------------IGNNDGY------LH 680 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGLK 898 QK++DQA S N D SG K+L A+ G+K Sbjct: 681 LVGI-------------MQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVK 727 Query: 899 TTYYLRSRSA 908 T YY +R Sbjct: 728 TLYYHNTRDG 737 >gi|125972577|ref|YP_001036487.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium thermocellum ATCC 27405] gi|256005139|ref|ZP_05430108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum DSM 2360] gi|281416768|ref|ZP_06247788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum JW20] gi|125712802|gb|ABN51294.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum ATCC 27405] gi|255990886|gb|EEU00999.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum DSM 2360] gi|281408170|gb|EFB38428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum JW20] gi|316941185|gb|ADU75219.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum DSM 1313] Length = 794 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/599 (28%), Positives = 286/599 (47%), Gaps = 83/599 (13%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE----TEKEKRAVE--FYNLLSSFH 350 +++L RY NG+ +E P+ F RVA +A + +E+E +++E FY+++ + Sbjct: 8 IKVLKKRYLAKDENGNLLEDPEGMFRRVARTVASADKEYVSEEELKSIEQEFYDMMVNLD 67 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ + D + GIF ++ A++ K GG G ++ +R Sbjct: 68 FLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFSFSRLRPK 127 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA ++ T G + G + F+KV N AV QGG R+GA L H D+ EF+ +KN Sbjct: 128 GASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDIVEFITCKKNNA 187 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D + N + I + FM V N + L P Sbjct: 188 D----ITNFNISVGITEEFMNAVENNEYYNLVEPHTG----------------------- 220 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 K+ K +A ++ ++ M + G P I F D N + +G + S+N C E L Sbjct: 221 ----KIVGKQNAREIFDLIVDMAWNNGEPGIIFLDRLNKDNVTPELGEIESTNPCGEQPL 276 Query: 591 NSSSEETAVCNLGSINL--LAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 CNLGSINL + + + + D+ KL +T+ AV LDNVID+N + + + Sbjct: 277 LPYE----ACNLGSINLSNMLKYVDGKPEVDFAKLRTTVWKAVHFLDNVIDVNKYPLPEI 332 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K R IGLG+MG+ L L+IPY S ++++A++ M FI + AS+ELA+++G Sbjct: 333 DKMTRGTRKIGLGVMGWADMLCKLNIPYNSQSSIDLAEKIMHFIQDESRKASMELAEKKG 392 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + + S++ ++G I +RN+ I Sbjct: 393 VFPYYDKSIYK-------NLG----------------------------IRVRNATTTTI 417 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLK 825 APT T++ I GVS I+P + Y+++ M D V VN K+ + + ++ + Sbjct: 418 APTGTLSIIAGVSSGIEPLFAISYIRNVMDNDELVEVNPVFKQVAKEEGFYSDELMRRIA 477 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 GSI + IP+ ++ + TA +I P W + + QK+ D A S + L + +K Sbjct: 478 -KKGSIRGFDEIPEWIQDVFVTAHDISPDWHVRMQAAFQKYTDNAVSKTVNLRNEATRK 535 >gi|119472402|ref|ZP_01614520.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales bacterium TW-7] gi|119444924|gb|EAW26222.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales bacterium TW-7] Length = 760 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 210/796 (26%), Positives = 342/796 (42%), Gaps = 89/796 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ +P + H + + + RY Sbjct: 64 KAAADQISKESPDYQYLAARLAVFHLRKKAYGQF--EPPRLFDHVTKMVSDK---RY--- 115 Query: 263 GVKARLLHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 A LL + + +FD L L + RD F Y ++ L +Y + + G E Q Sbjct: 116 --DAHLLADYTEQEFD--ELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171 Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374 ++ VA L + +E R FY+ +S F TP + +G R P Q SSC L Sbjct: 172 LYILVAASL-FADYPRETRVSYIKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLI 228 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I G+G + +R LG+HI G IPF K Sbjct: 229 ECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTA 288 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA + WH++VE L L+ N G D R ++ L R+ Sbjct: 289 VKSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLI 348 Query: 495 QNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 ++ TLFSP +V L+D + + EF+ Y YE+ E ++I A+ L+ Sbjct: 349 KDDYITLFSPSDVPGLYDAFFEDQDEFDTLYVKYEQD----ESIRKKRIKAIELFSVFAQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG ++ D CN SP V + SNLC EI L N E A+C L Sbjct: 405 ERASTGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL D+L AVR LDN++D + + AK + R +G+G++ Sbjct: 465 SAFNL-----GALESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ P Sbjct: 520 YAYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMP 579 Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D+ L ++ DE L WD L+K ++ GMRNS A+ P+ T + I + Sbjct: 580 TDTYKTDLDKICDE-----PLHLDWDALRKSIQEHGMRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P ++ VK++ G ++ + + +D ++ ++ D+ +DG Sbjct: 635 IEPPRGHISVKASKDG---ILKQVVPEYERLKDNYE--LLWDIPSNDG------------ 677 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWL 894 ++ QK++DQ S N D E + + + A+ Sbjct: 678 --------------YLQLVGIMQKFVDQTISANTNYDPNKFEGGKVPMKVLLKDLLSAYK 723 Query: 895 MGLKTTYYLRSRSATS 910 +G+KT YY +R S Sbjct: 724 LGVKTLYYHNTRDGAS 739 >gi|117920414|ref|YP_869606.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. ANA-3] gi|117612746|gb|ABK48200.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. ANA-3] Length = 762 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 206/791 (26%), Positives = 348/791 (43%), Gaps = 93/791 (11%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++ A GL++VS V T+ +DG+ + +I S+ LI E P+Y + Sbjct: 21 KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ +P K H + +E G + + +L Sbjct: 81 AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 + + + + RD F Y ++ L +Y + + E Q ++ VA L KE Sbjct: 130 IMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ + L +R+ + +LFSP +V L+D Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENISLFSPSDVPGLYD 366 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + EFE Y YE+ + + + + AV L+ M+ TG +I D CN Sbjct: 367 AFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERASTGRIYIQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V + SNLC EI L + + E A+C L ++NL A N + + Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKNLAELEP 480 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 LA AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Y+ A Sbjct: 481 LAD---LAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739 + ++ E I F+ + AS+ LA+E+GA F + + QG+ PID+ RD + + Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYK-----RDLDKICS 592 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 L W+ L++ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 593 EPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652 Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 VV F +ELK ++ ++ + ++G ++ Sbjct: 653 KQVVPDF--DELK----YNYELLWQMPSNEG--------------------------YLQ 680 Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909 QK++DQA S N D G+K+ D + A+ +G+KT YY +R Sbjct: 681 LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738 Query: 910 SVEKSTLKGVD 920 S + + ++ Sbjct: 739 SDQHDDITNIE 749 >gi|261867685|ref|YP_003255607.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413017|gb|ACX82388.1| hypothetical protein D11S_1001 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 756 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 203/793 (25%), Positives = 339/793 (42%), Gaps = 89/793 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P+ H + +Y +++ Sbjct: 65 AAADLISKDSPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKYDPSLLDDY 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 124 TREEW--DEMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + +FE Y YE+ + + R + AV L+ ++ Sbjct: 352 DITLFSPSDVPGLYETFFADQDKFEQLYVQYEQDPNIRK----RTVKAVELFSLLMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L + + E A+C L + Sbjct: 408 STGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + D+L + AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 468 NL-----GKLENLDELDNLADLAVRTLDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDT 582 Query: 726 IGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + ++ T L W+ L++ ++ G+RNS A+ P+ T + I + I+ Sbjct: 583 ------YKKDIDSLTTEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ VK++ G V N + + LWD IP + Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSRSA 908 GLKT YY +R Sbjct: 725 GLKTLYYQNTRDG 737 >gi|327440527|dbj|BAK16892.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris StLB046] Length = 697 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 195/706 (27%), Positives = 336/706 (47%), Gaps = 103/706 (14%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------AFEY------- 295 RY E V RL + ++ + YL ++ YE++F A+ Y Sbjct: 32 RYFLEDVNVRLRYFIDIEEKVRYLVDEGYYEKEFLELYSMDFIKQMYKKAYSYKFRFPSF 91 Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 + Y+ Y + + +E + + +A+ LA + ++A+E +++++ Sbjct: 92 MSASKFYESYAMKSRDGKEILEKYEDRIVIIALYLAQGDEALAEKAIE--AVMTAYQ--P 147 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG + +L SCF T+ D + I + L++ GG+G + T +R LG Sbjct: 148 ATPTALNSGKKARGELVSCFKLTMDDTMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGD 207 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G ++ GV+P K+ ++ NQ G+R G+ YL +H D+E F+ +K DD Sbjct: 208 PIKGILNRASGVMPVAKLLENSFSYSNQLGQRNGSGVVYLNVFHGDIEAFISSKKPNADD 267 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQAD 530 + R ++T +PD+F + + ++ LFS D+ YGK EI+ E Y D Sbjct: 268 KIRLATLSTGIILPDIFFELMRRDKDIVLFSS---YDIFKEYGKRMSEISITEMYYEFLD 324 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 I+ ++++A L+ ++ FE+G+P+ F D N P + +G V SNLCTEI Sbjct: 325 NPNIRKLKRLNARKLYTEIKKAQFESGYPFEIFDDNVNNTHPLKEIGRVKMSNLCTEIL- 383 Query: 591 NSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 ++T+V CNLGSI++ H A D+ +L + TA+R+L NV Sbjct: 384 --QYQQTSVVTDQNEPNEYGLDVSCNLGSIDI--HEATKVQDFGQL---VDTAMRLLTNV 436 Query: 636 ID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 +N ++ KA K H+ +GLG+M L I Y S E++E D ME ++ Sbjct: 437 STMTDIVNVPSVSKANKVMHS---VGLGVMNLHGHLVQSGIRYGSKESIEFIDAFMESLN 493 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNR-TSRL 744 +H++ AS+E+A+++ + F+ S + GV+ + L EV L +R Sbjct: 494 YHSLKASMEIAKQKNETFYRFEESDYASGVYFESYVNKEEKELTPEVIKALGGTPIITRN 553 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W++LK V G+ +S +AIAPT +I+ I + SI P Sbjct: 554 MWEQLKSDVLKHGLFHSYRLAIAPTGSISYIRSCTASISP-------------------- 593 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + ++ RD D I + + + +D ++++ A+E++P LI+ + Q Sbjct: 594 -VTERVEVRDYADSRTIYPMPF----------LTNDNQELYTEAYEVNPYELIDLYAAAQ 642 Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 K +DQ S+ LY+ D+ + ++L Y AW G+KT YY+R R T Sbjct: 643 KHVDQGISMTLYVTDQWNTEQLAKAYIYAWTKGIKTVYYVRQRLLT 688 >gi|150020504|ref|YP_001305858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho melanesiensis BI429] gi|149793025|gb|ABR30473.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho melanesiensis BI429] Length = 833 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 188/657 (28%), Positives = 310/657 (47%), Gaps = 94/657 (14%) Query: 299 QILYDRYFL-HINGSRIEMP-QAFFMRVAMGLALKET------------EKEKRAVEFYN 344 +IL +RYF ++NG +E RVA +A E E ++ F+ Sbjct: 20 KILTERYFFKNLNGKFLETKWDDVCRRVARVVATAELVNNPKLSNKKLDEIKELEETFFK 79 Query: 345 LLSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVP 377 +L + F+ ++PTLFN+G RH LS+CF+ + Sbjct: 80 MLKARIFIPNSPTLFNAGMGVRHELLWKPIEEMTLEDYEEIYKTRNHLHMLSACFVVPIE 139 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + IF A++E A++ K GG+G++++ +R G+ + GT+G++ G + F+ V N Sbjct: 140 DSIDEIFEAVKEYALITKAGGGIGSNFSNLRPKGSFVAGTHGQASGPVSFMHVYNSAIAV 199 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V QG KR+GA+ L H D+EEF+ ++N D + N + IP F K Sbjct: 200 VEQGYKRRGALMGILNINHPDIEEFITAKENN-DGEKILKYFNISVGIP--FDK------ 250 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFET 556 KEF YEN E + K RKI A + +++ ++T Sbjct: 251 ------------------KEFLKIYENDEEITLTHPKFKETRKIKARHILKRIAKNAWKT 292 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 G P + F N P + S+N C EI L CNLGSI++ NNQ Sbjct: 293 GDPGLAFLHEMNKYYPLYPEKEIISTNPCGEIGLAPYE----ACNLGSIDVSKFVENNQI 348 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ L +T+R VR LDNVID+N +EK K+ R +GLG+MGF L+ L++PY S Sbjct: 349 DWKALETTVRLTVRFLDNVIDVNVFPLEKITKAVKESRRLGLGIMGFADLLYKLNVPYNS 408 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVRDE 735 + EIA M FI+ H S +L +E+G + F K + + F ++G +++ DE Sbjct: 409 EKGREIAANLMGFIALHGHDESNKLGREKGNFPLFEKSRFFKEENFVPFAMG-MSKYDDE 467 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + E+ K K G RN + IAPT +I+NI S ++P++ YV+ Sbjct: 468 IK----------EVMKEAKK-GKRNVAVLTIAPTGSISNIADTSSGLEPNFLLAYVRYMN 516 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLK---YHDGSIGNIERIPDDLKKIHATAFEID 852 D F +N++ ++ L D + +K GS+ ++ +P+++KK+ TA +I Sbjct: 517 KHDGGKEALFYINKVLEQKL-DPITLEKIKEKLIEKGSLQELD-VPEEIKKVFVTAMDIS 574 Query: 853 PMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 PM + Q+++D ++++N+ + L+ IY +A+ + ++ R S Sbjct: 575 PMDHLLMQDAFQRYVDNNISKTINMPSNATEEDVLN-IYLEAFKLNVRGLTIYRDGS 630 >gi|260579707|ref|ZP_05847566.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium jeikeium ATCC 43734] gi|258602137|gb|EEW15455.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium jeikeium ATCC 43734] Length = 720 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 191/663 (28%), Positives = 307/663 (46%), Gaps = 78/663 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F+ +LG Y Y L +G R +E + VA+GLA +TE V+ Sbjct: 99 YAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGDTELASNLVD-- 156 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + F +TPT N G + + SCFL + D++ I ++ L+K GG+ Sbjct: 157 -EIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 215 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + VR GA I +S GVIP +K+ D NQ G R+GA YL H D+ F Sbjct: 216 LLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRF 275 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F Sbjct: 276 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADVS 332 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E+YE + I+ KI+A A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 333 VTEHYEEMVEDPRIRK-SKINARAFFQTLAEIQFESGYPYIMFEDTVNKANPIE--GRIT 389 Query: 581 SSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI S+ E CNLGS+N+ D + + TI TA Sbjct: 390 HSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIA-----KAMDSEDFSKTIETA 444 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + ++ ++ N AIGLG M L HI Y S EA++ + Sbjct: 445 IRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALDFTNAYF 504 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741 + + A+ AS ++AQERG + +F+ S + G F P + VR ++ N + Sbjct: 505 ATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERVR-QIFGNSS 563 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 ++P W +LK+ V+ G+ N N AI PT +I+ I + SI P + + K Sbjct: 564 IQVPTAQDWQQLKEAVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIRKEGKI 623 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G ++ NE +L+Y++ A+EI + Sbjct: 624 GRVYYPAPYMTNE-------------NLEYYE------------------DAYEIGYEKI 652 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R R T++ + Sbjct: 653 IDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIRLRQ-TALTGTE 711 Query: 916 LKG 918 ++G Sbjct: 712 VEG 714 >gi|326772790|ref|ZP_08232074.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces viscosus C505] gi|326637422|gb|EGE38324.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces viscosus C505] Length = 718 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 189/650 (29%), Positives = 295/650 (45%), Gaps = 71/650 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y F FE +LG Y Y L +G R + F RV M L L + + E+ A++ Sbjct: 97 YAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLADGD-EQLALDLV 153 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + S F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 154 DEMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVAL 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 214 LLSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + N LFSP +V ++ + + + Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYGMPFADINVT- 332 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y D G IK +KI+A ++ + + FE+G+P++ F+D N +P + G V S Sbjct: 333 EKYREMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVVMS 389 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI S E CNLGS+N+ D A TIRTAVR Sbjct: 390 NLCSEILQVSEPSELNEDLTYAHVGKDISCNLGSLNIA-----KTMDSPDFARTIRTAVR 444 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + ++ + NH AIGLG M L I Y S E ++ + Sbjct: 445 GLTAVSDQTHLPSVPSIDRGNHESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFAS 504 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-- 741 + F A++AS E+A ERG ++ F+ S + G F D + + V++ A + Sbjct: 505 VLFAALTASNEMAVERGESFVGFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHV 564 Query: 742 -SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 +R W EL +++K G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 565 PTREDWAELAEKIKKGGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRV 624 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 F+ N+ N+E D A+EI P +I++ Sbjct: 625 YYPAPFMTND-----------------------NLEYYRD--------AYEIGPEKIIDT 653 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + + +DQ SL L+ D + + ++ AW G+KT YY+R R A Sbjct: 654 YAVATQHVDQGLSLTLFFPDTATTRDVNRAQIYAWRKGIKTLYYIRLRQA 703 >gi|56418246|gb|AAV91060.1| ribonucleoside-diphosphate reductase alpha subunit [Grouper iridovirus] Length = 572 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 166/587 (28%), Positives = 268/587 (45%), Gaps = 97/587 (16%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A + Y+ + F S+P L NSG +S CFL VPD ++G+ E L+ G Sbjct: 46 ASKLYSYSCAGWFGYSSPVL-NSGAGGLPIS-CFLMYVPDSIHGLISHTAELRWLSVLGG 103 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+ W VRG + KS G IPF+ + A QG R+G+ AY+ H D Sbjct: 104 GVAGHWDAVRG-------PSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPD 156 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + EFL +R TGD R+ +++ + D FM V ++ W L P+ Sbjct: 157 IVEFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNTS----------- 205 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHV 576 K+ + + A LW ++L F TG P++ F D N + + Sbjct: 206 ----------------KIVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTK 249 Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 G+ + SNLC EI L + + TAVC L S+NL +D K + VR+LDNV Sbjct: 250 GLKIRGSNLCNEIHLPTDKDRTAVCCLSSVNL------EMYDEWKDTDLVECVVRMLDNV 303 Query: 636 ID--------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 ++ ++ HT ++ R++G+G MG+ L IP+ A + DE Sbjct: 304 MEDFISRAPTLSAHTANAVAGAS-GERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIF 362 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 I A+SAS +LA E+G P D +G Sbjct: 363 GAIKAAALSASKKLAAEKGE--------------PPDLVGY------------------- 389 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 G+RN++ +A+AP A A + G S S++P N YV +G + N +L Sbjct: 390 ---------GVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLE 440 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +L++ ++ + + + + GS+ ++ P+ L++++ TAFEID M ++ A+ RQ+ + Sbjct: 441 RDLRELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHL 500 Query: 868 DQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 Q QS+NL+ + K KL ++R AW + K YYLR+++ + K Sbjct: 501 CQGQSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKANRTSRK 547 >gi|259417280|ref|ZP_05741199.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter sp. TrichCH4B] gi|259346186|gb|EEW58000.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter sp. TrichCH4B] Length = 710 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 187/667 (28%), Positives = 306/667 (45%), Gaps = 80/667 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 D Y + F F +LG Y Y L +G R + + RV M EK A++ Sbjct: 86 DAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR--YLERYEDRVVMNALTLARGDEKLAMK 143 Query: 342 FYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + + F +TPT N+G + + SCFL + D++ I + L+K GG+ Sbjct: 144 LMSEIIDGRFQPATPTFLNAGKKARGEFVSCFLLRLEDNMESIGRGINSALQLSKRGGGV 203 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 T +R GA I G +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 204 ALMLTNIREHGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIL 263 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-E 519 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG+ F E Sbjct: 264 RFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---HDVEKVYGQAFSE 320 Query: 520 IAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I+ E Y D +I+ +KI+A A ++ + + FE+G+P+I F+D N +P G Sbjct: 321 ISVTEKYHEMVDNPQIRK-KKINARAFFQTIAEIQFESGYPYIMFEDTVNAANPI--AGR 377 Query: 579 VHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI +N +SE CNLGS+N+ D LA T+ Sbjct: 378 IAMSNLCSEILQVNEASEFNDDLSYAQMGTDISCNLGSMNIA-----RAMDGGDLAGTVG 432 Query: 627 TAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TA+R L+ V +++ ++ +K N AIGLG M L I Y S E V+ + Sbjct: 433 TAIRALNAVSEMSSIDSVPSIRKGNEEGHAIGLGQMNLHGYLARERIHYGSAEGVDFTNI 492 Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG--------LLAEVRDEL 736 + +HA+SAS LA+E+ A + F+ S + G F +G + E+ + Sbjct: 493 YFCTVLYHALSASNALAKEKKAKFKGFEDSAYADGSFFEKYVGQDWLPETDRVKELFEAA 552 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + +R W+ L+ +V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 553 GIEIPTRKDWEALRDKVMKHGLYNRNLQAVPPTGSISYINYATSSIHPITAKIEIRK--- 609 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852 +G IG + + +D + + A++I Sbjct: 610 -------------------------------EGKIGRVYYPAPYMTNDNLEYYRDAYDIG 638 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P +I++ + + +DQ SL L+ E S + ++ AW G+KT YY+R R ++ Sbjct: 639 PEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIRLRQ-QAL 697 Query: 912 EKSTLKG 918 E + ++G Sbjct: 698 EGTEVEG 704 >gi|299780592|gb|ADJ39954.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage T4T] Length = 754 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNAGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G+K YY +R + + Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737 >gi|113951999|gb|ABI48936.1| NrdA [Enterobacteria phage T6] Length = 754 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G+K YY +R + + Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737 >gi|292488818|ref|YP_003531705.1| ribonucleotide reductase subunit alpha [Erwinia amylovora CFBP1430] gi|292899969|ref|YP_003539338.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Erwinia amylovora ATCC 49946] gi|291199817|emb|CBJ46940.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia amylovora ATCC 49946] gi|291554252|emb|CBA21548.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora CFBP1430] gi|312172976|emb|CBX81231.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora ATCC BAA-2158] Length = 761 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 197/698 (28%), Positives = 312/698 (44%), Gaps = 56/698 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A LQ+VS V ++ Y+G+ SD+ +I Sbjct: 5 LLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259 S+ LI ++ P+Y + AR + LR++ ++ P Q EM P Y Sbjct: 65 SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 E E M F + + RD F Y ++ L +Y + ++G E Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169 Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G G IPF K Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+D + +EFE Y YE+ G I+ +++ AV L+ M+ Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFANQEEFERLYTQYEQD---GSIRK-QRVKAVDLFSLMM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A ++ D +LA+ AVR LD ++D + I AK+ R +G+G++ Sbjct: 464 LSAFNLGA--IDSLDDLQELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ Sbjct: 519 NYAYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578 Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PID+ +D A+ N L W+ L++ VKT G+RNS A+ P+ T + I + Sbjct: 579 PIDTYK-----KDLDAICNTPLLLDWEALRESVKTHGLRNSTLSALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817 I+P ++ +K++ G VV + + + LWD Sbjct: 634 GIEPPRGHISIKASKDGILRQVVPEYELLKDNYELLWD 671 >gi|113951988|gb|ABI48928.1| NrdA [Enterobacteria phage T2H] Length = 754 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G+K YY +R + + Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737 >gi|327311809|ref|YP_004338706.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20] gi|326948288|gb|AEA13394.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20] Length = 877 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 175/647 (27%), Positives = 308/647 (47%), Gaps = 74/647 (11%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGIFGALQENAML 393 +Y+ ++S + ++P FN+ T+ +SCF V D L Y I+ AL + ++ Sbjct: 210 YYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLTHPGRYCIYDALAYSGII 269 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 + GG+G D++ +R G + G+ G + G I F+K+ + + QGGKR+GA L Sbjct: 270 QQLGGGVGYDFSLLRPEGDVVRGSVGVASGPISFMKLFDANVDVIKQGGKRRGAQMGTLH 329 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR---VTQNAGWTLFSPDEVSDL 510 WH D+ +F+ + D + N + ++ D FM++ V QN + L +P Sbjct: 330 VWHPDIRKFIKAKTGELKDAH-LQNFNISVFVDDTFMEKALGVDQNPKYPLINP------ 382 Query: 511 HDLYGKEFEIAYENYE--RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 Y K + A E+ + ++A+ ++ ++ A L+R++ +++G P + FK N Sbjct: 383 RVFYDKTGQKAVEHVDVYKEAEVPRDAIWGEVDASQLFREISNSAWDSGDPGLIFKANLN 442 Query: 569 IRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615 +P + + S N C E N VCNL INL+ +N Sbjct: 443 ASNPLLGEEIEVAGYRFTYIWRSVNPCAETVQNPFE----VCNLTHINLVKFIKDNCAGS 498 Query: 616 --------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D++ LA R R LD+ ID + IE + N R GLG+MGF L Sbjct: 499 SFEEKLACIDWEGLAQAARLGTRFLDSAIDRSRTGIEIVDEMNSATRKNGLGIMGFAELL 558 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG-------- 719 L IPYAS EAVE+ + M +I +A+ AS +LA+E+G + F+ S++ +G Sbjct: 559 IKLGIPYASWEAVELINRIMGWIYVNALDASADLAREKGPFKYFEKSIYARGELPALKFQ 618 Query: 720 ------------VFPIDSIGLLAEVRDELAMNRTSRLPW-DELKKRVKTIGMRNSNCMAI 766 V+P + +R+ R LP+ ++LK++VK G+RNS ++I Sbjct: 619 DFVWSRWERVKHVYPPELRDAGDRLREITERTRQWLLPYIEKLKEKVKG-GVRNSVVLSI 677 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT + + G + I+P + ++++ G + LK R LW A+ ++ Sbjct: 678 APTGRTSILAGTTSGIEPVFALAFLRNVTVGTLVEYYEPGIEYLKARGLWTPAVRKAVE- 736 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKK 884 G + + +P+D+K + ATA EI +W + + Q+W+DQ ++++N+ + PS Sbjct: 737 ETGMLRDAP-VPEDVKHLLATAMEIGWLWHVLMQASAQQWVDQGISKTINMPANAPS-DD 794 Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 + + + AW +G+K T Y +S+S + + + KL +T Sbjct: 795 VYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLAETKIT 841 >gi|222099545|ref|YP_002534113.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga neapolitana DSM 4359] gi|221571935|gb|ACM22747.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga neapolitana DSM 4359] Length = 836 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 192/676 (28%), Positives = 320/676 (47%), Gaps = 109/676 (16%) Query: 300 ILYDRYFLH-INGSRIE---------MPQAFFMRVAMGLALKETEKEKRAVE----FYNL 345 IL DRYF+ ++G +E + + + + K+ EK R E F+ + Sbjct: 31 ILKDRYFMRDLDGKYLETRWEDVARRVARVVATAELLNPSYKKGEKLDRIKEWEDTFFKI 90 Query: 346 LSSFHFMCSTPTLFNSG-------------------------TRHP--QLSSCFLTTVPD 378 L + F+ ++PTLFN+G TR+ LS+CF+ V D Sbjct: 91 LKARLFLPNSPTLFNAGLGVRYELLWKPIDQMTLEDYEEIYRTRNHLHMLSACFVVPVGD 150 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + IF A++E A++ K GG+G++++ +R G+ + GT+GK+ G + F+ V N V Sbjct: 151 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 210 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG +R+GA+ L H D+EEF+D ++ NT + + F Sbjct: 211 KQGYRRRGALMGILNIDHPDIEEFIDAKRE-----------NTGEAVLNFF--------N 251 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 ++ P + ++ LY ++ E+ ++ R R +K+ L+RK+ + +++G Sbjct: 252 LSVGIPMDKKEILKLYEEDGELEL-SHPRSTIRKRVKIRE------LFRKIASNAWKSGD 304 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617 P + F N P ++S+N C EI L+ + CNLGSI++ A F NN F D Sbjct: 305 PGLAFLGEMNRYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 359 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + L ++ AVR LD+VID+N I+K K+ R +GLG+MGF L+ L +PY S Sbjct: 360 LEALQELVQIAVRFLDDVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLELPYDSQ 419 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW--DQGVFP--IDSIGLLAEVR 733 EA + A M FI+ HA AS EL +E+G + + S + ++G P + + E+R Sbjct: 420 EARDFASNLMAFIALHAHRASYELGKEKGNFPLLEISRYRTEEGFVPFAMGTSNYDDEIR 479 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + M R R RN + IAPT +I+NI S ++P++ Y + Sbjct: 480 EVMKMTREYR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRY 524 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 D T VN++ + L E + I GS+ +I +P+ +K++ A +I Sbjct: 525 MTKEDGTKEPLLYVNQVLREKLDPEILRRIEKDLIEKGSLKDIPDVPEKIKRVFVVALDI 584 Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLDE-PSGKKLDFIYRQAWLMG 896 DP+ L++ A +R K I+ QS LN+YL+ + + IYR L Sbjct: 585 DPIDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITIYRDGSLQT 644 Query: 897 LKTTYYLRSRSATSVE 912 T L++ A V+ Sbjct: 645 QVLTKALKTPEAPKVQ 660 >gi|116326447|ref|YP_803167.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32] gi|115344040|gb|ABI95049.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32] Length = 754 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G+K YY +R + + Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737 >gi|84386982|ref|ZP_00990006.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio splendidus 12B01] gi|84378272|gb|EAP95131.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio splendidus 12B01] Length = 760 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 190/696 (27%), Positives = 306/696 (43%), Gaps = 50/696 (7%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ + ++ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYG----------EYEPPALY-DHVAKLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L E + L + ++RD F Y ++ L +YF+ + E Q Sbjct: 113 GKYDSHLMEDYTKAEFEELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K ++ + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTM 552 +LFSP +V L+D + + FE Y YE + V R+ + AV L+ ++ Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEALYVKYE-----NDPSVKRETVKAVELFSLLMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V V SNLC EI L + E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A N+ D LA VR LD ++D + + A+KS R +G+G++ + Sbjct: 466 AFNL---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPI 580 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ +D +L WD L++ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----KDIDLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817 +P + VK++ G VV FL + LW+ Sbjct: 636 EPPRGYVSVKASKDGILKQVVPDFLNLKDNYELLWN 671 >gi|114563304|ref|YP_750817.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella frigidimarina NCIMB 400] gi|114334597|gb|ABI71979.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella frigidimarina NCIMB 400] Length = 762 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 208/784 (26%), Positives = 338/784 (43%), Gaps = 89/784 (11%) Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-P 214 S + ++ ++ A GL++VS V ++ +DG+ + +I ++ LI E P Sbjct: 16 SIDLDKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESP 75 Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y V AR + LR++ E LY ++ + +E G + Sbjct: 76 DYQFVAARLAVFHLRKKAFG----------QFEPPTLY-DHVTKLVEIGKYDMHIMADYS 124 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKE 332 +L L + + RD F Y ++ L +Y + + E Q ++ VA L + Sbjct: 125 REELDILDTYIDHWRDLNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACLFARY 184 Query: 333 TE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQ 388 + + K +FY+ S F TP + +G R P Q SSC L D L I Sbjct: 185 PKEIRLKYIKDFYDATSLFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATAS 242 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 G+G + +R LG+ I G G +PF K + +QGG R GA Sbjct: 243 SIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAA 302 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 + WH++VE L L+ N G D R ++ + L +R+ + +LFSP +V Sbjct: 303 TLFYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGEYISLFSPSDVP 362 Query: 509 DLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 L+D + + EFE Y YE+ ++ + ++I AV L+ M+ TG +I D Sbjct: 363 GLYDAFFEDQAEFERLYLQYEQDSNIRK----KQIKAVELFSLMMQERASTGRIYIQNVD 418 Query: 566 PCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQF 616 CN SP V + SNLC EI L + E A+C L ++NL A Sbjct: 419 HCNTHSPFDSKVAPIKQSNLCLEIALPTKPLTNIDDPDGEIALCTLSALNLGA-----IK 473 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +L AVR LDN++D + I+ A+ S+ R +G+G++ F + L Y+ Sbjct: 474 DLSELEPLADLAVRALDNLLDYQDYPIKAAQTSSMNRRTLGIGVINFANYLAKNGKKYSD 533 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDE 735 A + ++ E I F+ + AS+ LA+E+GA F + + +G+ PID+ L ++ DE Sbjct: 534 GSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFHETTYSKGILPIDTYKRDLDKICDE 593 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + W+ L+ +K G+RNS A+ P+ T + I + I+P + VK++ Sbjct: 594 -----PLHMDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASK 648 Query: 796 SGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G VV F + + K LW ++ +DG Sbjct: 649 DGQLKQVVPDFELLKDKYELLW------NMPNNDG------------------------- 677 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL--------MGLKTTYYLRSR 906 I+ QK+IDQA S N D PS + + Q L +G+KT YY +R Sbjct: 678 -YIQLVGLMQKFIDQAISANTNYD-PSRFEGGRVPMQTLLKDLLSVYKLGIKTLYYHNTR 735 Query: 907 SATS 910 S Sbjct: 736 DGAS 739 >gi|113970254|ref|YP_734047.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. MR-4] gi|113884938|gb|ABI38990.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. MR-4] Length = 762 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 206/791 (26%), Positives = 347/791 (43%), Gaps = 93/791 (11%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++ A GL++VS V T+ +DG+ + +I S+ LI E P+Y + Sbjct: 21 KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ +P K H + +E G + + +L Sbjct: 81 AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 + + + RD F Y ++ L +Y + + E Q ++ VA L KE Sbjct: 130 IMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ + L +R+ + +LFSP +V L+D Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENISLFSPSDVPGLYD 366 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + EFE Y YE+ + + + + AV L+ M+ TG +I D CN Sbjct: 367 AFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERASTGRIYIQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V + SNLC EI L + + E A+C L ++NL A N + + Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKNLAELEP 480 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 LA AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Y+ A Sbjct: 481 LAD---LAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739 + ++ E I F+ + AS+ LA+E+GA F + + QG+ PID+ RD + + Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEQGACPLFNETTYAQGILPIDTYK-----RDLDKICS 592 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 L W+ L++ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 593 EPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652 Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 VV F +ELK ++ ++ + ++G ++ Sbjct: 653 KQVVPDF--DELK----YNYELLWQMPSNEG--------------------------YLQ 680 Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909 QK++DQA S N D G+K+ D + A+ +G+KT YY +R Sbjct: 681 LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738 Query: 910 SVEKSTLKGVD 920 S + + ++ Sbjct: 739 SDQHDDITNIE 749 >gi|170288626|ref|YP_001738864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga sp. RQ2] gi|281412178|ref|YP_003346257.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga naphthophila RKU-10] gi|170176129|gb|ACB09181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga sp. RQ2] gi|281373281|gb|ADA66843.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga naphthophila RKU-10] Length = 827 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 189/641 (29%), Positives = 303/641 (47%), Gaps = 108/641 (16%) Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345 IL DRYF+ ++G+ +E + + + K+ EK R E F+ + Sbjct: 22 ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDTFFRV 81 Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378 L + F+ ++PTLFN+G +H LS+CF+ V D Sbjct: 82 LKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + IF A++E A++ K GG+G++++ +R G+ + GT+GK+ G + F+ V N V Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG +R+GA+ L H D+EEF+D +K NT + + F + G Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 + P + ++ LY ++ E+ E R I+ +K+ L+RK+ T +++G Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617 P + F N P ++S+N C EI L+ + CNLGSI++ A F NN F D Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + L ++ AVR LDNVID+N I+K K+ R +GLG+MGF L+ L IPY S Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733 EA + A M FI+ A S EL +E+G + + S + D V F + E+R Sbjct: 411 EARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + M + R RN + IAPT +I+NI S ++P++ Y + Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 D T VN++ + L E + I GS+ +I +P+ +KK+ A +I Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKKIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575 Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLD 878 DPM L++ A +R K I+ QS LN+YL+ Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLE 616 >gi|21672461|ref|NP_660528.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091141|sp|Q8K9W3|RIR1_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|21623076|gb|AAM67739.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 763 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 201/799 (25%), Positives = 354/799 (44%), Gaps = 87/799 (10%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 +G N ++ ++ A GL+++S V + Y+ +S ++ +I ++ LI Sbjct: 11 NGKKEKINLDKIHKVLNWAAKGLENISVSQVELRSRIQFYNNISTVNIHETIIKAAADLI 70 Query: 211 -EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 E P+Y + AR + LR++ ++ P H + +Y +LL Sbjct: 71 SENTPDYQYMAARLAIFHLRKKAYGQ-FEPPNLYYHVKKMVQLGKY---------DEKLL 120 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327 + + V + + + + RD F Y ++ L +Y L + G E Q ++ ++ Sbjct: 121 QNYSFE-EYVEMNSFVDHRRDMNFSYAAVKQLEAKYLLQNRVTGQIYESAQFLYILISAC 179 Query: 328 LALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGI 383 L K +K + FYN +S+F TP + SG R P Q SSC L D+L I Sbjct: 180 LFSKYEKKVRMNYIQRFYNAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECADNLNSI 237 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 G+G + +R LG+ I G IPF K + +QGG Sbjct: 238 NATTSAIVKYVSQRAGIGINAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCSQGGV 297 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA + WH+++E L L+ N G + R ++ A I L +R+ TLFS Sbjct: 298 RGGAATVFYPIWHLEIESLLVLKNNRGIEENRVRHLDYAVQINKLMYQRMLLGQKITLFS 357 Query: 504 PDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 P +V L++ + K+F+ Y YE+ + + + I+A+ L+ ++ TG + Sbjct: 358 PSDVPKLYEFFFSDQKKFKEIYIKYEKNRNIRK----KSINAIDLFCLIMRERASTGRIY 413 Query: 561 ITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHF 611 I D CN S + + SNLC EITL + + E A+C L ++NL Sbjct: 414 IQHVDHCNSHSAFNSKLATIRQSNLCLEITLPTKPLNNIDDKNGEIALCTLSALNL--GL 471 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N+ D +L++ +VR LD +++ + + AKKS + R++G+G++ F L Sbjct: 472 INDLHDLKELST---LSVRALDEILEYQNYPVVCAKKSAISRRSLGIGVINFAYYLAKNK 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+G+ S F + + G FPID+ Sbjct: 529 VRYSDGSAKNLTHKTFEAIQYYLLKASCELAKEKGSCSLFNQTNYYLGKFPIDTYK---- 584 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 +D + N L W+ L+K++K G+RNS A+ P+ T + I + I+P + Sbjct: 585 -KDIDSICNEPLHLNWNLLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFIS 643 Query: 791 VKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +KS+ G VV + + + LW+ IP+++ + A Sbjct: 644 IKSSKDGMLRQVVPEYKKLKSEYELLWE-------------------IPNNIGYLELVAI 684 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL------YLDEP-SGKKLDFIYRQAWLMGLKTTYY 902 QK++DQ+ S N +L+E K+L + A+ +G+KT YY Sbjct: 685 -------------MQKFVDQSISANTNYDPKRFLNEKIPMKQLIYDLLVAYKLGIKTLYY 731 Query: 903 LRSRSATSVEKSTLKGVDG 921 +R ++ K ++ Sbjct: 732 QNTRDGAEDNQNLNKSIEN 750 >gi|332534564|ref|ZP_08410399.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035984|gb|EGI72463.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 760 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 210/795 (26%), Positives = 343/795 (43%), Gaps = 87/795 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ +P + H + + + RY Sbjct: 64 KAAADQISKESPDYQYLAARLAVFHLRKKAYGQF--EPPRLFDHVTKMVGDK---RY--- 115 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A LL + + +L L L + RD F Y ++ L +Y + ++G E Q Sbjct: 116 --DAHLLVD-YTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L + +E R FY+ +S F TP + SG R P Q SSC L Sbjct: 173 YILVAASL-FSDYPRETRTDYIKRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+HI G IPF K Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G D R ++ L R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 + TLFSP +V L+D + + EF+ Y YE+ E ++I A+ L+ Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQAEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN SP V + SNLC EI L N E A+C L Sbjct: 406 RASTGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + ++ L AVR LDN++D + + AK + R +G+G++ + Sbjct: 466 AFNLGAIESLDE-----LEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ P Sbjct: 521 AYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580 Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ L ++ DE L WD L+ +K GMRNS A+ P+ T + I + I Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDTLRASIKEHGMRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P ++ VK++ G ++ + + +D ++ ++ D+ +DG Sbjct: 636 EPPRGHISVKASKDG---ILKQVVPEYERLKDQYE--LLWDIPSNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWLM 895 ++ QK++DQ S N D E + + + A+ + Sbjct: 678 -------------YLQLVGIMQKFVDQTISANTNYDPNKFEGGKVPMQVLLKDLLSAYKL 724 Query: 896 GLKTTYYLRSRSATS 910 G+KT YY +R S Sbjct: 725 GVKTLYYHNTRDGAS 739 >gi|217076775|ref|YP_002334491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho africanus TCF52B] gi|217036628|gb|ACJ75150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho africanus TCF52B] Length = 838 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 174/595 (29%), Positives = 290/595 (48%), Gaps = 86/595 (14%) Query: 317 PQAFFMRVAMGLAL-KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG--TRHP------- 366 PQ M A L + KETE+ F+ +L + F+ ++PTLFN+G RH Sbjct: 60 PQVKKMDDAKKLEIIKETEET-----FFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIE 114 Query: 367 ------------------QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 LS+CF+ V D + GIF A++E A++ K GG+G++++ +R Sbjct: 115 NMTLSDYQEIYNTRNHLHMLSACFVVPVDDSINGIFEAVKEYALITKAGGGIGSNFSSLR 174 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+ + GT+G++ G + F+ V N V QG KR+GA+ L H D+EEF+ ++N Sbjct: 175 PKGSFVAGTHGQASGPVSFMHVFNSAIGVVEQGYKRRGALMGILNINHPDIEEFITAKEN 234 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D + N + IP F E+ L++ G E E+++ + + Sbjct: 235 N-DGEKVLKYFNISVGIP---------------FDKKELLRLYEEDG-EIELSHPKFTEK 277 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 R I A + +++ ++TG P + F N P + S+N C EI Sbjct: 278 ---------RYIKARDIIKQIAENAWKTGDPGLAFLHEMNKYYPLYPEMKIISTNPCGEI 328 Query: 589 TLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 L CNLGSI+ +A F + Q D+D L T+R AVR LDNVID+N +EK Sbjct: 329 GLAPYE----ACNLGSID-VAKFVTDDGQVDWDALEDTVRLAVRFLDNVIDVNVFPLEKI 383 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + R +GLG+MGF L+ L IPY S E + A + M F++ H S +L +E+G Sbjct: 384 TNAVRNSRRLGLGIMGFADLLYKLDIPYNSEEGRQFAADLMGFMALHGHDESNKLGREKG 443 Query: 707 AYSSF-KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 ++ F K + + F ++G+ D + R S+ G RN + Sbjct: 444 SFPLFEKSKFFKEEEFVPFAMGMSKYDEDIKKVMRESKK------------GKRNVAVLT 491 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPT +I+NI S ++P++ YV+ D T + F VN++ ++ L D ++ +K Sbjct: 492 IAPTGSISNIADTSSGLEPNFLLAYVRYMNKHDGTKESLFYVNKVLEKKL-DPKILEKIK 550 Query: 826 ---YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875 GS+ +++ +P+++KK+ TA +I PM + Q+++D ++++N+ Sbjct: 551 EKLIEKGSLQDLD-VPEEIKKVFVTAMDISPMVHLLMQDAFQRYVDNNISKTINM 604 >gi|332993181|gb|AEF03236.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas sp. SN2] Length = 773 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 204/795 (25%), Positives = 342/795 (43%), Gaps = 89/795 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G S + +++ +V A GL++VS V + +DG++ S++ LI Sbjct: 5 LSVTKRNGEQESIDLEKIHKVVTWAAKGLENVSVSQVEIKAQIQFFDGINTSEIHETLIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI + P+Y + AR + LR++ E L+ E+ +E G Sbjct: 65 SAADLISTDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALF-EHVTNMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLIEDYTAEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + + + FY+ S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACLFANYPKDTRMSYIRRFYDAASTFKLSLPTPIM--SGVRTPTRQFSSCVLIETG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ ++ Sbjct: 292 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKDD 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + ++FE Y YE + + ++I A+ L+ + Sbjct: 352 YISLFSPSDVPGLYDAFFADQEKFERLYVQYENDDNIRK----KRIKAMELFSLFMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG ++ D CN SP V V SNLC EI L N E A+C L + Sbjct: 408 STGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDEEGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + ++F ++L+ AVR LDN++D + + A + R +G+G++ F Sbjct: 468 NLGAIKSLDEF--EELSD---LAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A + + E + ++ + AS LA+E+GA F + + QG+ PIDS Sbjct: 523 YLAKNGVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDS 582 Query: 726 IGLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +L N WD L++ +KT G+RNS A+ P+ T + I + ++ Sbjct: 583 ------YKKDLDGVCNEPLHYDWDALREEIKTHGLRNSTLSALMPSETSSQISNATNGVE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +KS+ G V+ + + RD ++ ++ D+ +DG Sbjct: 637 PPRGFISIKSSKDG---VLKQVVPEYERLRDQYE--LLWDIPSNDG-------------- 677 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDF-----IYRQAWLM 895 ++ QK+IDQ S N D PS G K+ + + Sbjct: 678 ------------YLQLVGIMQKFIDQTISANTNYD-PSRYDGNKVPMKLLLKDLLTTYKL 724 Query: 896 GLKTTYYLRSRSATS 910 G+KT YY +R + Sbjct: 725 GVKTLYYHNTRDGAT 739 >gi|220980069|emb|CAP72261.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli LF82] gi|323934217|gb|EGB30641.1| ribonucleoside-diphosphate reductase [Escherichia coli E1520] Length = 771 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 221/805 (27%), Positives = 348/805 (43%), Gaps = 103/805 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G + ++ +V G++ VS+ V +++DG++ S L AL+ Sbjct: 2 ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGITTSQLHEALVK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY++V AR + K+R++ Y P + ++ + + +G Sbjct: 62 SAADLISPEAPNYSQVAARLNIFKIRKDAFGR-YDYPN----------FYQHIVKNVNKG 110 Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 V K L H S + + L N +K +RD F Y L +Y + + G E PQ Sbjct: 111 VYDKDLLTHYSFEEIE--ELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQH 168 Query: 320 FFMRVAMGLALKETEKE---KRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 +M V M L + E + K +E FY++ S+F TP + +G R P Q SS Sbjct: 169 IYMLVGMCL-FQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFSS 225 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 226 CVLIESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKH 285 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA A+ WH++VE L ++ N G D R ++ L Sbjct: 286 FQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMY 345 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547 +R+ ++ TLFSP +V D+++ + + FE Y YE AD K + + A+ L+ Sbjct: 346 RRLVRSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYE--ADDSIRK--KSVPAIELFS 401 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598 ++ TG +I D N + V SNLC EITL + + E A Sbjct: 402 SLMQERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIA 461 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +C L + NL A + + L AV LD+++D + +E A+ R++G+ Sbjct: 462 LCTLSAFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGI 516 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ F L + Y+ ++ E+ E I ++ + AS LA+ +G F+ + + Sbjct: 517 GVTNFAYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAI 576 Query: 719 GVFPID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 G PID S+ E EL M PW+EL++R+ G+RNS A P T + Sbjct: 577 GQLPIDHYRSSLDESGETNFELKM------PWEELRERIAKYGLRNSTLTAQMPCETSSQ 630 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + I+P + VKS+ G VV F + + LWD Sbjct: 631 ITNSTNGIEPPRGPVSVKSSKDGIVKMVVPEFEKLKEQYEYLWD---------------- 674 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDFI-- 888 +PD+ + A QK+ DQA S N D PS G K+ + Sbjct: 675 ---MPDNRGYLTKVAI-------------IQKFFDQAISANTNYD-PSRFEGDKVPMMTL 717 Query: 889 ---YRQAWLMGLKTTYYLRSRSATS 910 A+ MG+KT YY +R Sbjct: 718 LSDLLLAYKMGVKTLYYHNTRDGAG 742 >gi|119944869|ref|YP_942549.1| ribonucleotide-diphosphate reductase subunit alpha [Psychromonas ingrahamii 37] gi|119863473|gb|ABM02950.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychromonas ingrahamii 37] Length = 757 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 212/783 (27%), Positives = 328/783 (41%), Gaps = 93/783 (11%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219 ++ ++ A GL++VS V ++ YDG+ D+ +I ++ LI E P+Y + Sbjct: 21 KIHRVITWAAEGLKNVSVSQVELNSHIQFYDGIRTDDIHETIIKAAADLISETSPDYQYL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 A + LR++ + P H C +Y +E+ K E M F Sbjct: 81 AAHLAVFHLRKKAYRR-FTPPSIFEHVSKMCSKGKYDMHLLEDYSKQEF--EEMEKF--- 134 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 + ++RD F Y ++ L +Y + + G E Q +M VA L E Sbjct: 135 -----IVHDRDLKFSYAAVKQLEGKYLIQNRVTGDIYESAQFLYMMVAACL-FSNYEPAI 188 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R FY+ +S F TP + +G R P Q SSC L D L I Sbjct: 189 RLSYVRRFYDAVSQFKISLPTPIM--AGVRTPTRQFSSCVLIETGDSLDSINATSSAIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G IPF K + +QGG R GA + Sbjct: 247 YVSQRAGIGINAGRIRALGSAIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATVFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G D R ++ + LF +R+ LFSP +V L+D Sbjct: 307 PVWHLEVESLLVLKNNRGIDSNRIRHLDYGVQLSRLFYQRLIDKKNVALFSPSDVPGLYD 366 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + EFE Y YE D + + ISAV L+ ++ TG +I D CN Sbjct: 367 AFFEDQDEFERLYNLYEGDPDIRQ----KSISAVELFSLLMQERASTGRIYIQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINLLAHFANNQFDYDK 620 SP V + SNLC EI L + E A+C L + NL A + ++ Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLQHIMDEEGEIALCTLSAFNLGAIESLDE----- 477 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L AVR LD+++D + ++ A+ S+ R +G+G++ F L + Y+ A Sbjct: 478 LEELAELAVRALDSLLDYQDYPVKAAENSSMARRTLGIGVINFAYYLAKNGVKYSDGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMN 739 + ++ E I ++ + AS +LA ERGA F + + QG+ P+D+ L + DE Sbjct: 538 NLTHKTFEAIQYYLLKASNKLAFERGACPKFNETRYSQGILPLDTYKKSLDNICDE---- 593 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 L W+ L+ + G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 594 -QYHLDWETLRSDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSVKASKDGIL 652 Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 VV + + LWD IP++ +E Sbjct: 653 KQVVPEYEKYKQNYELLWD-------------------IPNN-------------QGYLE 680 Query: 859 SASRRQKWIDQAQSLNLYLDE--------PSGKKL-DFIYRQAWLMGLKTTYYLRSRSAT 909 QK+IDQA S N D P L D + A+ MG+KT YY +R Sbjct: 681 LVGIMQKFIDQAISANTNYDPKRFSEGRVPMTNLLKDLLV--AYKMGVKTLYYHNTRDGA 738 Query: 910 SVE 912 E Sbjct: 739 DDE 741 >gi|295395247|ref|ZP_06805455.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium mcbrellneri ATCC 49030] gi|294972009|gb|EFG47876.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium mcbrellneri ATCC 49030] Length = 720 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 184/662 (27%), Positives = 303/662 (45%), Gaps = 75/662 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF+ + + Y + F F+ +LG Y Y L +G R +E + + VA+ LA Sbjct: 87 DFEFISELSKFAYSKKFRFQTFLGAFKFYTSYTLKTFDGKRYLERFEDRVVMVALFLARG 146 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + E + VE + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 147 DRELARNLVE---EIIAGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSA 203 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA Sbjct: 204 LQLSKRGGGVAFSLTNIRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 263 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 264 YLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDV 320 Query: 511 HDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YG F E Y+ D I+ KI A ++ + + FE+G+P+I ++D N Sbjct: 321 EQVYGVPFSDISVTEKYDEMVDDARIRK-TKIRAREFFQTLAEIQFESGYPYIMYEDTVN 379 Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQF 616 +P G + SNLC+EI ++ +SE A CNLGS+N+ Sbjct: 380 RANPID--GKITMSNLCSEILQVSEASEYNADLTYAHVGKDISCNLGSLNIAM-----AM 432 Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D D T+ TA+R L V D N ++ ++ N+ AIGLG M L I Y Sbjct: 433 DSDDFGRTVETAIRGLTAVSDTSNISSVPSIERGNNMSHAIGLGQMNLHGYLARESIHYG 492 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSI 726 S E ++ + +++HA+ AS+E+A+ERG A+ F+ S + G + + Sbjct: 493 SEEGLDFTNMYFYTVAYHAVRASMEIAKERGVAFEGFERSKYASGEYFEKYTQQEWVPRT 552 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 +A++ ++ ++ ++ W L+ V T G+ N N A+ PT +I+ I + SI P Sbjct: 553 QKVADLFEKAGVHIPTQDDWAALRDDVATYGIYNQNLQAVPPTGSISYINNSTASIHPIA 612 Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + + K G F+ N+ N+E D Sbjct: 613 SRIEIRKEGKIGRVYYPAPFMTND-----------------------NLEYYQD------ 643 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A+E+ +I++ + K +DQ SL L+ D + + ++ AW G+KT YY+R Sbjct: 644 --AYEVGYEKVIDTYAEATKHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIR 701 Query: 905 SR 906 R Sbjct: 702 IR 703 >gi|309797908|ref|ZP_07692289.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|308118516|gb|EFO55778.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] Length = 771 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 221/805 (27%), Positives = 348/805 (43%), Gaps = 103/805 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G + ++ +V G++ VS+ V +++DG++ S L AL+ Sbjct: 2 ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALVK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY++V AR + K+R++ Y P + ++ + + +G Sbjct: 62 SAADLISPEAPNYSQVAARLNIFKIRKDAFGR-YDYPN----------FYQHIVKNVNKG 110 Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 V K L H S + + L N +K +RD F Y L +Y + + G E PQ Sbjct: 111 VYDKDLLTHYSFEEIE--ELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQH 168 Query: 320 FFMRVAMGLALKETEKE---KRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 +M V M L + E + K +E FY++ S+F TP + +G R P Q SS Sbjct: 169 IYMLVGMCL-FQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFSS 225 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 226 CVLIESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKH 285 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA A+ WH++VE L ++ N G D R ++ L Sbjct: 286 FQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMY 345 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547 +R+ ++ TLFSP +V D+++ + + FE Y YE AD K + + A+ L+ Sbjct: 346 RRLVRSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYE--ADDSIRK--KSVPAIELFS 401 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598 ++ TG +I D N + V SNLC EITL + + E A Sbjct: 402 SLMQERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIA 461 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +C L + NL A + + L AV LD+++D + +E A+ R++G+ Sbjct: 462 LCTLSAFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGI 516 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ F L + Y+ ++ E+ E I ++ + AS LA+ +G F+ + + Sbjct: 517 GVTNFAYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAI 576 Query: 719 GVFPID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 G PID S+ E EL M PW+EL++R+ G+RNS A P T + Sbjct: 577 GQLPIDHYRSSLDESGETNFELKM------PWEELRERIAKYGLRNSTLTAQMPCETSSQ 630 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + I+P + VKS+ G VV F + + LWD Sbjct: 631 ITNSTNGIEPPRGPVSVKSSKDGIVKMVVPEFEKLKEQYEYLWD---------------- 674 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDFI-- 888 +PD+ + A QK+ DQA S N D PS G K+ + Sbjct: 675 ---MPDNRGYLTKVAI-------------IQKFFDQAISANTNYD-PSRFEGDKVPMMTL 717 Query: 889 ---YRQAWLMGLKTTYYLRSRSATS 910 A+ MG+KT YY +R Sbjct: 718 LSDLLLAYKMGVKTLYYHNTRDGAG 742 >gi|262274471|ref|ZP_06052282.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Grimontia hollisae CIP 101886] gi|262221034|gb|EEY72348.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Grimontia hollisae CIP 101886] Length = 759 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 209/805 (25%), Positives = 343/805 (42%), Gaps = 87/805 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ G + + ++ ++ A GL +VS V ++ YDG+ D+ +I Sbjct: 4 QITVLKRSGIKENIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYDGIKTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ P H + +E Sbjct: 64 KAAADLISEETPDYQYLAARLAVFHLRKKAYGR-FEPPTLLDH----------VNKMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L L + + + RD F Y ++ L +Y + + G E Q Sbjct: 113 GKYDKHLLEDYTAEELNILDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L KE R FY+ +S F TP + SG R P Q SSC L Sbjct: 173 YIMVAACL-FANYPKETRLDYIRRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CDDSLDSINATASAIVRYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +LFSP +V L+D + EFE Y YE D + RK AV L+ M+ Sbjct: 350 GENISLFSPSDVPGLYDAFFADQAEFERLYVKYEN--DPSIQRETRK--AVELFSLMMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603 TG +I D CN SP V + SNLC EI L + E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPIRQSNLCLEIALPTKPLTNVEDDQGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+L +R LD+++D + + A+K+ R +G+G++ F Sbjct: 466 AFNLGA-----IKELDELEELADLTIRALDSLLDYQDYPLPAARKATMNRRTLGVGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I ++ + ASV LA+ERGA +F + + +G+ PI Sbjct: 521 AYYLAKNGVRYSDGSANGLTHRTFEAIQYYLLKASVGLAKERGACPAFNETNYAKGLLPI 580 Query: 724 DSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ RD A+ + WD L+ + G+RNS A+ P+ T + I + I Sbjct: 581 DTYK-----RDLDAICDEPLHYDWDALRAEIIEHGLRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + +K++ G ++ + K +D ++ ++ +++ +DG Sbjct: 636 EPPRGFVSIKASKDG---ILKQVVPEYEKYKDSYE--LLWNIESNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLM 895 ++ QK++DQA S N D +P GK + + + A+ + Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPSKQPGGKVPMKLLLKDLLSAYKL 724 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920 G+KT YY +R + L D Sbjct: 725 GVKTLYYHNTRDGADDAQKDLAAQD 749 >gi|283852533|ref|ZP_06369801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. FW1012B] gi|283572141|gb|EFC20133.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. FW1012B] Length = 743 Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 176/619 (28%), Positives = 294/619 (47%), Gaps = 85/619 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHF 351 +L RY + +GS +E + F RVA +A +E + E A FY+L+ F Sbjct: 22 VLAKRYLMKGPDGSPLEDVRGLFWRVAAAIAAEEAKYGNSPFAPEDLARRFYDLMVGMRF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QL++CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 82 LPNSPTLMNAGTPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKK 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+++ N V QGG R+GA L H D+ EF+ ++ + Sbjct: 142 ARVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRVDHPDILEFITCKERENE 201 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + N + + + FM+ V + + L P + + Sbjct: 202 ----LQNFNISVALTERFMQAVEKGEDYDLIDPRDKA----------------------- 234 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 V + SA ++ ++ +E+G P I F D N +P +G + S+N C E L Sbjct: 235 ----VVGRQSAADVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLL 290 Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGS+NL A + D+ L T+ AVR LDNVID + + +++ Sbjct: 291 PYE----ACNLGSVNLAVFHDPAAPDGIDWAGLTETVHLAVRFLDNVIDASRYPLDQITD 346 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +R IGLGLMGF L+LLHIPY S EA+++A+ M+ I + SAS LA ERG + Sbjct: 347 MVQANRKIGLGLMGFADLLYLLHIPYDSTEALKLAERIMDTIQGESKSASKALAAERGPF 406 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIA 767 ++ S++ + + +G RN+ IA Sbjct: 407 PAYPDSIFGK-----------------------------------RNLGPYRNATTTTIA 431 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826 PT T++ I G S I+P + + + M G+ V N VN +K+ + ++++ ++ Sbjct: 432 PTGTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANVHFVNAMKEAGAYSDSLMEEVT- 490 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 GSI +I +PD L+++ TA +I+P+W ++ + QK+ D A S + L ++ + + Sbjct: 491 RKGSIAHIGMLPDALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNDATQDDI 550 Query: 886 DFIYRQAWLMGLKTTYYLR 904 IYR A+ +G K R Sbjct: 551 REIYRLAYELGCKGVTVYR 569 >gi|293411956|ref|ZP_06654681.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] gi|291469511|gb|EFF12000.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] Length = 771 Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 221/805 (27%), Positives = 348/805 (43%), Gaps = 103/805 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ +G + ++ +V G++ VS+ V +++DG++ S L AL+ Sbjct: 2 ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALVK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY++V AR + K+R++ Y P + ++ + + +G Sbjct: 62 SAADLISPEAPNYSQVAARLNIFKIRKDAFGR-YDYPN----------FYQHIVKNVNKG 110 Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 V K L H S + + L N +K +RD F Y L +Y + + G E PQ Sbjct: 111 VYDKDLLTHYSFEEIE--ELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQH 168 Query: 320 FFMRVAMGLALKETEKE---KRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 +M V M L + E + K +E FY++ S+F TP + +G R P Q SS Sbjct: 169 IYMLVGMCL-FQNWEDDCAGKTRMEMVKGFYDITSTFKLSLPTPIM--AGVRTPTRQFSS 225 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 226 CVLIESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKH 285 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA A+ WH++VE L ++ N G D R ++ L Sbjct: 286 FQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMY 345 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547 +R+ ++ TLFSP +V D+++ + + FE Y YE AD K + + A+ L+ Sbjct: 346 RRLVRSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYE--ADDSIRK--KSVPAIELFS 401 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598 ++ TG +I D N + V SNLC EITL + + E A Sbjct: 402 SLMQERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIA 461 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +C L + NL A + + L AV LD+++D + +E A+ R++G+ Sbjct: 462 LCTLSAFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGI 516 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ F L + Y+ ++ E+ E I ++ + AS LA+ +G F+ + + Sbjct: 517 GVTNFAYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAI 576 Query: 719 GVFPID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 G PID S+ E EL M PW+EL++R+ G+RNS A P T + Sbjct: 577 GQLPIDHYRSSLDESGETNFELKM------PWEELRERIAKYGLRNSTLTAQMPCETSSQ 630 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + I+P + VKS+ G VV F + + LWD Sbjct: 631 ITNSTNGIEPPRGPVSVKSSKDGIVKMVVPEFEKLKEQYEYLWD---------------- 674 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDFI-- 888 +PD+ + A QK+ DQA S N D PS G K+ + Sbjct: 675 ---MPDNRGYLTKVAI-------------IQKFFDQAISANTNYD-PSRFEGDKVPMMTL 717 Query: 889 ---YRQAWLMGLKTTYYLRSRSATS 910 A+ MG+KT YY +R Sbjct: 718 LSDLLLAYKMGVKTLYYHNTRDGAG 742 >gi|148269941|ref|YP_001244401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga petrophila RKU-1] gi|147735485|gb|ABQ46825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga petrophila RKU-1] Length = 827 Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 189/641 (29%), Positives = 303/641 (47%), Gaps = 108/641 (16%) Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345 IL DRYF+ ++G+ +E + + + K+ EK R E F+ + Sbjct: 22 ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDTFFRV 81 Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378 L + F+ ++PTLFN+G +H LS+CF+ V D Sbjct: 82 LKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + IF A++E A++ K GG+G++++ +R G+ + GT+GK+ G + F+ V N V Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG +R+GA+ L H D+EEF+D +K NT + + F + G Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 + P + ++ LY ++ E+ E R I+ +K+ L+RK+ T +++G Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617 P + F N P ++S+N C EI L+ + CNLGSI++ A F NN F D Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + L ++ AVR LDNVID+N I+K K+ R +GLG+MGF L+ L IPY S Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733 EA + A M FI+ A S EL +E+G + + S + D V F + E+R Sbjct: 411 EARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + M + R RN + IAPT +I+NI S ++P++ Y + Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 D T VN++ + L E + I GS+ +I +P+ +KK+ A +I Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKKIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575 Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLD 878 DPM L++ A +R K I+ QS LN+YL+ Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLE 616 >gi|284009346|emb|CBA76527.1| ribonucleoside-diphosphate reductase 1 alpha chain [Arsenophonus nasoniae] Length = 767 Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 186/675 (27%), Positives = 301/675 (44%), Gaps = 51/675 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL+DVS V + YDG+ SD+ +I Sbjct: 9 LLVTKRDGHKERIDLDKIHKVITWAAEGLKDVSVSQVELRSQIQFYDGIKTSDIHETMIK 68 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ +P H + + + +++ Sbjct: 69 AAADLISADTPDYQYLAARLAIFHLRKKAYGQF--EPPALYQHVLHMVKIGKYDKHLLTD 126 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 A E M F L + RD F Y ++ L +Y + ++G E Q + Sbjct: 127 YSAEEF-EQMDSF--------LDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 177 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ +S+F TP + +G R P Q SSC L Sbjct: 178 ILVAACL-FSRYPKETRLDYIHRFYDAISNFKISLPTPIM--AGVRTPTRQFSSCVLIEC 234 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 235 GDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 294 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ I L +R+ ++ Sbjct: 295 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQINKLMYERLIKS 354 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V+ L++ + EFE Y YE+ A + +++ A+ L+ M+ Sbjct: 355 EEITLFSPSDVAGLYEAFFADQSEFERLYLKYEQDASIRQ----KRVKALDLFSLMMQER 410 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V + SNLC EI L N E A+C L + Sbjct: 411 ASTGRIYIQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTRPLNDINDEKGEIALCTLSA 470 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD+++D + I A+K + R +G+G++ + Sbjct: 471 FNLGAITS-----LDELEELAVLAVRALDSLLDYQNYPIIAAEKGSMGRRTLGIGVINYA 525 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID Sbjct: 526 YYLAKHGVHYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNDTTYAKGILPID 585 Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S L A + L + W L+K +K G+RNS A+ P+ T + I + I Sbjct: 586 SYKKSLDALTSEPLHYD------WQTLRKNIKQYGLRNSTLSALMPSETSSQISNATNGI 639 Query: 783 DPSYQNLYVKSNMSG 797 +P + +K++ G Sbjct: 640 EPPRGYISIKASKDG 654 >gi|146293169|ref|YP_001183593.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella putrefaciens CN-32] gi|145564859|gb|ABP75794.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella putrefaciens CN-32] Length = 762 Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 206/783 (26%), Positives = 340/783 (43%), Gaps = 95/783 (12%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ ++ A GL++VS V ++ YDG+ + +I ++ LI E P+Y Sbjct: 20 EKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETIIKAAADLISPESPDYQF 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR + LR++ E LY ++ + +E G + + +L Sbjct: 80 LAARLAVFHLRKKAFG----------QFEPPALY-DHVTKLVELGKYDMHILQDYTREEL 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333 + + + RD F Y ++ L +Y + + E Q ++ VA L KET Sbjct: 129 DLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391 + K +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 WH++VE L L+ N G + R ++ + + +R+ + +LFSP +V L+ Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365 Query: 512 DLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 D + + EFE Y YE+ + + + I AV L+ M+ TG +I D CN Sbjct: 366 DAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421 Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619 SP V + SNLC EI L + + E A+C L ++NL A + Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA-----IKELS 476 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L + Y+ A Sbjct: 477 ELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 + + E I F+ + AS+ LA+E+GA F + + QG+ PID+ RD + Sbjct: 537 NNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYK-----RDLDKIC 591 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 N L W+ L+ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 592 NEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQ 651 Query: 799 F-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 VV F + LW + +DG + Sbjct: 652 LKQVVPDFDTLKDNYELLW------KMPSNDG--------------------------YL 679 Query: 858 ESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRS 907 + QK++DQA S N D PS G+K+ D + A+ +G+KT YY +R Sbjct: 680 QLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRD 736 Query: 908 ATS 910 S Sbjct: 737 GAS 739 >gi|319426319|gb|ADV54393.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella putrefaciens 200] Length = 762 Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 206/783 (26%), Positives = 340/783 (43%), Gaps = 95/783 (12%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ ++ A GL++VS V ++ YDG+ + +I ++ LI E P+Y Sbjct: 20 EKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETIIKAAADLISPESPDYQF 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR + LR++ E LY ++ + +E G + + +L Sbjct: 80 LAARLAVFHLRKKAFG----------QFEPPALY-DHVTKLVELGKYDMHILQDYTREEL 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333 + + + RD F Y ++ L +Y + + E Q ++ VA L KET Sbjct: 129 DLMNTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391 + K +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 WH++VE L L+ N G + R ++ + + +R+ + +LFSP +V L+ Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365 Query: 512 DLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 D + + EFE Y YE+ + + + I AV L+ M+ TG +I D CN Sbjct: 366 DAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421 Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619 SP V + SNLC EI L + + E A+C L ++NL A + Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA-----IKELS 476 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L + Y+ A Sbjct: 477 ELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 + + E I F+ + AS+ LA+E+GA F + + QG+ PID+ RD + Sbjct: 537 NNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYK-----RDLDKIC 591 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 N L W+ L+ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 592 NEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQ 651 Query: 799 F-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 VV F + LW + +DG + Sbjct: 652 LKQVVPDFDTLKDNYELLW------KMPSNDG--------------------------YL 679 Query: 858 ESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRS 907 + QK++DQA S N D PS G+K+ D + A+ +G+KT YY +R Sbjct: 680 QLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRD 736 Query: 908 ATS 910 S Sbjct: 737 GAS 739 >gi|255928975|ref|YP_003097287.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4] gi|255705261|emb|CAR63250.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4] Length = 772 Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 199/729 (27%), Positives = 326/729 (44%), Gaps = 65/729 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K+ G + + N ++ +VEEAC GL VS+ V + +DG+ D++ L+ Sbjct: 7 IKVKKRSGAVEALNLDKIHKMVEEACEGLGSGVSASQVEMNSGLQFFDGIETKDIQEILV 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKAT-HHEMQCLYPEYFCRYIE 261 S+ LI + PNY V AR LL +R++V + + H +C + Sbjct: 67 RSASDLISLDTPNYQFVAARLLLFAVRKQVFGAGWVNGHPSVFEHATKC---------VS 117 Query: 262 EGV-KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318 +GV +L + ++ + + + + ++RD F Y GL+ + D+Y + +G E PQ Sbjct: 118 KGVYDGDILGKYSLE-EWSKINSWIDHDRDMLFTYAGLRQVVDKYLVQDRSSGEMYETPQ 176 Query: 319 AFFMRVAMGLALK-ETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374 +M +A+ L TE V+ +YN +S TP + +G R P Q +SC L Sbjct: 177 YMYMMIAVTLFQNYPTETRLEYVKRYYNAISKHKINIPTPIM--AGVRTPLRQFASCVLV 234 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L IF + G+G + +RG+ A I G + GVIPFLK T Sbjct: 235 DSDDTLDSIFTSDMAIGRYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEAT 294 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R Sbjct: 295 VRCCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFI 354 Query: 495 QNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 N +LFSP +V L+D +G F+ Y YE D + R+I A L +L Sbjct: 355 NNEEISLFSPHDVPGLYDAFGTPGFDDLYRAYEFDPDVPQ----RRIGAQELLLALLKER 410 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVC-----N 601 ETG +I D CN S V+ SNLC EITL + E A+C N Sbjct: 411 AETGRVYIMNIDHCNEHS--SFTDKVNMSNLCQEITLPTDPLQHIDGDGEIALCILSAIN 468 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 +G IN L D L + AVR L+ +ID + + A+ S R++G+G + Sbjct: 469 VGKINKL----------DDLENLCDLAVRGLEELIDYQDYPVRAAELSTLNRRSLGIGYI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L Y P A ++ + E ++ + +S +A+E+G F + + QG+ Sbjct: 519 GLAHYLAKHGEHYDDPAAWKLVHDLSESFQYYLLKSSNTVAKEKGKCGYFDRTKYAQGIL 578 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID+ DE R W+ L+ + T G+R+S A P+ + + + + Sbjct: 579 PIDT---YKRDIDEFCGTEL-RHDWESLRTSITTHGLRHSTLSAQMPSESSSVVSNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFTVV---------NSFLVNELKQRDLWDEAMISDLKYHDGSI- 831 I+P + VK + G + N L+ ++K D + + + + K+ D +I Sbjct: 635 IEPPRAYMSVKKSKKGPLKQIVPQYGSLKNNYTLLWDMKDNDGYIKVVAAMQKFFDQAIS 694 Query: 832 GNIERIPDD 840 GN P++ Sbjct: 695 GNWSYNPEN 703 >gi|329947188|ref|ZP_08294512.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328525700|gb|EGF52726.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 718 Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 194/655 (29%), Positives = 295/655 (45%), Gaps = 75/655 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y F FE +LG Y Y L +G R + F RV M L L + + E+ A++ Sbjct: 97 YAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLADGD-EQLALDLI 153 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + S F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 154 DEMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVAL 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 214 LLSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA- 521 LD ++ D++ R ++ IPD+ + N LFSP D+ +YG F Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSP---YDVERVYGMPFADVN 330 Query: 522 -YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D G IK +KI+A ++ + + FE+G+P++ F+D N +P + G V Sbjct: 331 VTEKYHEMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVV 387 Query: 581 SSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI LN V CNLGS+N+ D A TIRTA Sbjct: 388 MSNLCSEILQVSEPSRLNEDLTFAHVGKDISCNLGSLNIA-----KTMDSPDFARTIRTA 442 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 VR L V D + ++ + NH AIGLG M L I Y S E ++ + Sbjct: 443 VRGLTAVSDQTHLPSVPSIDRGNHESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYF 502 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741 + F A++AS E+A ERG ++ F+ S + G F D + + V++ A + Sbjct: 503 ACVLFAALTASNEMAVERGESFVGFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSV 562 Query: 742 ---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797 +R W EL +VK G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 563 HVPTREDWAELAAKVKKGGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIG 622 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F+ N+ N+E D A+EI P +I Sbjct: 623 RVYYPAPFMTND-----------------------NLEYYQD--------AYEIGPEKII 651 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 ++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R A + Sbjct: 652 DTYAAATQHVDQGLSLTLFFPDTATTRDVNRAQIYAWRKGIKTLYYIRLRQAALI 706 >gi|120598754|ref|YP_963328.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. W3-18-1] gi|120558847|gb|ABM24774.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. W3-18-1] Length = 762 Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 207/783 (26%), Positives = 342/783 (43%), Gaps = 95/783 (12%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ ++ A GL++VS V ++ YDG+ + +I ++ LI E P+Y Sbjct: 20 EKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETIIKAAADLISPESPDYQF 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR + LR++ E LY ++ + +E G + + +L Sbjct: 80 LAARLAVFHLRKKAFG----------QFEPPALY-DHVTKLVELGKYDMHILQDYTREEL 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333 + + + RD F Y ++ L +Y + + E Q ++ VA L KET Sbjct: 129 DLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391 + K +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 WH++VE L L+ N G + R ++ + + +R+ + +LFSP +V L+ Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365 Query: 512 DLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 D + + EFE Y YE+ + + + I AV L+ M+ TG +I D CN Sbjct: 366 DAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421 Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619 SP V + SNLC EI L + + E A+C L ++NL A + + Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKELSELE 479 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +LA AVR LDN++D + I+ A+ ++ R +G+G++ F + L + Y+ A Sbjct: 480 RLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMRYSDGSA 536 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 + + E I F+ + AS+ LA+E+GA F + + QG+ PID+ RD + Sbjct: 537 NNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYK-----RDLDKIC 591 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 N L W+ L+ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 592 NEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQ 651 Query: 799 F-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 VV F + LW + +DG + Sbjct: 652 LKQVVPDFDTLKDNYELLW------KMPSNDG--------------------------YL 679 Query: 858 ESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRS 907 + QK++DQA S N D PS G+K+ D + A+ +G+KT YY +R Sbjct: 680 QLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRD 736 Query: 908 ATS 910 S Sbjct: 737 GAS 739 >gi|293392276|ref|ZP_06636610.1| ribonucleoside-diphosphate reductase, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952810|gb|EFE02929.1| ribonucleoside-diphosphate reductase, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 756 Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 203/793 (25%), Positives = 338/793 (42%), Gaps = 89/793 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ + P+ H + +Y +++ Sbjct: 65 AAADLISKDSPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKYDPSLLDDY 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + M F + + RD F Y ++ L +Y + + G E Q + Sbjct: 124 TREEW--DEMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + +FE Y YE + + R + AV L+ ++ Sbjct: 352 DITLFSPSDVPGLYEAFFADQDKFEQLYVQYELDPNIRK----RTVKAVELFSLLMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V V SNLC EI L + + E A+C L + Sbjct: 408 STGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAF 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + D+L + AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 468 NL-----GKLENLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDT 582 Query: 726 I--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + L N W+ L++ ++ G+RNS A+ P+ T + I + I+ Sbjct: 583 YKKDIDSLTTEPLHYN------WESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ VK++ G V N + + LWD IP + Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPSNDG 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 +H QK++DQA S N D E + + + A+ Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724 Query: 896 GLKTTYYLRSRSA 908 GLKT YY +R Sbjct: 725 GLKTLYYQNTRDG 737 >gi|90412218|ref|ZP_01220224.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium profundum 3TCK] gi|90326942|gb|EAS43327.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium profundum 3TCK] Length = 753 Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 203/793 (25%), Positives = 346/793 (43%), Gaps = 83/793 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ +++ A GL +VS V +++ YDG+ +D+ +I Sbjct: 4 QLTVTKRDGRKETIELDKIHRVIDWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ P H + + Sbjct: 64 KAAADLISEESPDYQYLAARLAIFNLRKKAYGQ-FEPPTLFAH----------VTNLVNK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L E + + + + RD F Y ++ L +Y + ++G E Q Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ +A L K ++ + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 DDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +VE L L+ N G + R M+ + L R+ + Sbjct: 291 CCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +LFSP +V L+D + EFE Y YE+ A IK I A+ L+ ++ Sbjct: 351 QNISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDA---SIKK-ESIKAIELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLGS 604 TG +I D CN SP V + SNLC EI L N E E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D ++LA VR LD ++D + + A++S R +G+G++ + Sbjct: 467 FNLGA--IDTLDDLEELAD---LTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + ASV LA+E+GA +F + + QG+ PID Sbjct: 522 YYLAKHGVRYSDGSANNVTHQAFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D++ W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKAIDDVCSEEL-HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + VK++ G ++ + K +D ++ ++ ++ +DG Sbjct: 638 PRGFVSVKASKDG---ILKQVVPEYSKYKDNYE--LLWNIGSNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLMGL 897 ++ QK+IDQ+ S N D + +GK + + + A+ +G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSKQANGKVPMKLLLKDLLNAYKLGV 726 Query: 898 KTTYYLRSRSATS 910 KT YY +R S Sbjct: 727 KTLYYHNTRDGAS 739 >gi|238759172|ref|ZP_04620340.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] gi|238702588|gb|EEP95137.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] Length = 709 Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 201/687 (29%), Positives = 317/687 (46%), Gaps = 73/687 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 +EEG + + E DF + Y + F F +LG Y Y L +G R +E Sbjct: 62 VEEGYYEKEVLERY-DFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 120 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA+ + VE + S F +TPT N G + +L SCFL Sbjct: 121 YEDRVCMVALTLAVGNPTLARELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 177 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I A+ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 178 IEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 237 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 238 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 297 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP +V ++ + E I+ E Y D I+ KI A ++ + + FE Sbjct: 298 NEEMYLFSPYDVEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQVLAEIQFE 355 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +NS++E + CNLG Sbjct: 356 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSATEYNDDLSYRHIGKDISCNLG 413 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ AH D TI TA+R L V D+ N ++ +K N AIGLG M Sbjct: 414 SLNI-AH----TMDSPDFGKTIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 468 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF 721 L I Y S EA++ + + +HAI AS +LA ERG+Y F S + G + Sbjct: 469 LHGYLARERIFYGSEEALDFTNIYFYNVVYHAIRASNQLAMERGSYFKGFDQSTYASGHY 528 Query: 722 PIDSIGL-----LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATI 772 I A+VR+ A S +P W L++ V G+ N N A+ PT +I Sbjct: 529 FTKYIEQGWQPKTAKVRELFATAGIS-IPNQQDWTALRQSVMEHGIYNQNLQAVPPTGSI 587 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I + SI P +++ ++ R E I + Y + Sbjct: 588 SYINHSTSSIHP---------------------IISPIEIRK---EGKIGRVYYPAPYMT 623 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 N D+L+ H A++I P +I++ + + +DQ SL L+ D S + ++ Sbjct: 624 N-----DNLEYYH-DAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTASTRDINKAQIY 677 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 678 AWKKGIKTIYYIRLRQ-MALEGTEVEG 703 >gi|160875519|ref|YP_001554835.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS195] gi|160861041|gb|ABX49575.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS195] gi|315267706|gb|ADT94559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS678] Length = 762 Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 206/782 (26%), Positives = 341/782 (43%), Gaps = 93/782 (11%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ ++ A GL++VS V ++ +DG+ + +I ++ LI E P+Y Sbjct: 20 EKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESPDYQF 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR + LR++ ++ P TH + +E G + + +L Sbjct: 80 LAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKLVELGKYDMHILQDYSREEL 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333 + + + RD F Y ++ L +Y + + E Q ++ VA L KET Sbjct: 129 DVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391 + K +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 WH++VE L L+ N G + R ++ + + +R+ + +LFSP +V L+ Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365 Query: 512 DLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 D + EFE Y YE+ + + + I AV L+ M+ TG +I D CN Sbjct: 366 DAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421 Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619 SP V + SNLC EI L + E A+C L ++NL + D + Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNLGS--IKELSDIE 479 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 LA AVR LDN++D + I+ A+ ++ R +G+G++ F + L + Y+ A Sbjct: 480 PLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 E+ + E I F+ + AS+ LA+E+GA F + + QG+ PID+ RD + Sbjct: 537 NELTHRTFEAIQFYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYK-----RDLDKIC 591 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 L W+ L+ +K G+RNS A+ P+ T + I + I+P + VKS+ G Sbjct: 592 AEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKSSKDG- 650 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +LKQ ++ D S + ++P + + Sbjct: 651 ----------QLKQ-------VVPDFDTLKDSYELLWKMPSNDGYLQLVGI--------- 684 Query: 859 SASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRSA 908 QK++DQA S N D PS G+K+ D + A+ +G+KT YY +R Sbjct: 685 ----MQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDG 737 Query: 909 TS 910 S Sbjct: 738 AS 739 >gi|170726651|ref|YP_001760677.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella woodyi ATCC 51908] gi|169811998|gb|ACA86582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella woodyi ATCC 51908] Length = 762 Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 208/794 (26%), Positives = 347/794 (43%), Gaps = 87/794 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ G + ++ ++ A L++VS V ++ +DG+ + +I Sbjct: 5 LKVTKRSGEREIIDLDKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ +P K H + +E G Sbjct: 65 AAADLISPESPDYQFLSARLAIFHLRKKAFGQF--EPPKLYDH---------VVKLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + +L L + + RD F Y ++ L +Y + + E Q + Sbjct: 114 KYDTHILQDYTREELDILDGYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K ++ + FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACLFAKYPQETRLDYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G +PF K + Sbjct: 232 DSLDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ I L +R+ Q Sbjct: 292 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQINKLMYQRLIQGG 351 Query: 498 GWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + + EF+ Y YE AD K +++ A L+ M+ Sbjct: 352 VISLFSPSDVPGLYDAFFEDQDEFDRLYLQYE--ADDSIRK--KQVKASELFGLMMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG ++ D CN SP V + SNLC EI L N + E A+C L ++ Sbjct: 408 STGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLDNVNDPNGEIALCTLSAL 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A N + + LA AVR LDN++D + + A+KS+ R +G+G++ F + Sbjct: 468 NLGA--IKNLAELEPLAD---LAVRALDNLLDYQDYPLIAAQKSSMNRRTLGIGVINFAN 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A I ++ E I ++ + AS+ LA+E+GA +F + + +GV PID+ Sbjct: 523 YLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPAFHETTYSKGVLPIDT 582 Query: 726 IG-LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L + DE + W+ L++ + T G+RNS A+ P+ T + I + I+P Sbjct: 583 YKRALDNICDE-----PLHMDWETLRQDIVTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + VKS+ G +LKQ ++ D + + S + ++P++ + Sbjct: 638 PRGLISVKSSKDG-----------QLKQ-------VVPDFEKYQYSYELLWQMPNNDGYL 679 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--------AWLMG 896 QK++DQA S N D PS + Q A+ +G Sbjct: 680 QLVGL-------------MQKFVDQAISANTNYD-PSRFDNQKVPMQVLLKDLLNAYKLG 725 Query: 897 LKTTYYLRSRSATS 910 +KT YY +R S Sbjct: 726 VKTLYYHNTRDGAS 739 >gi|77360361|ref|YP_339936.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas haloplanktis TAC125] gi|76875272|emb|CAI86493.1| ribonucleoside diphosphate reductase 1, alpha subunit [Pseudoalteromonas haloplanktis TAC125] Length = 760 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 209/795 (26%), Positives = 344/795 (43%), Gaps = 87/795 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y ++AR + LR++ +P + H + + + RY Sbjct: 64 KAAADQISKESPDYQYLSARLAVFHLRKKAYGQF--EPPRLFDHVTKMVGDK---RY--- 115 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A LL + + +L L L + RD F Y ++ L +Y + + G E Q Sbjct: 116 --DAHLLVD-YTEQELDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L + ++ R FY+ +S F TP + +G R P Q SSC L Sbjct: 173 YILVAASL-FADYPRDTRIAYIKRFYDAISLFKISLPTPIM--AGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+HI G IPF K Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G D R ++ L R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 + TLFSP +V L+D + + EF+ Y YE+ E ++I A+ L+ Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN SP V + SNLC EI L N E A+C L Sbjct: 406 RASTGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLDNVNDEEGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + ++ L AVR LDN++D + + AK + R +G+G++ + Sbjct: 466 AFNLGAIESLDE-----LEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ P Sbjct: 521 AYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580 Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ L ++ DE L WD L+ +K GMRNS A+ P+ T + I + I Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDALRASIKEHGMRNSTVSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P ++ VK++ G ++ + + +D ++ ++ D+ +DG Sbjct: 636 EPPRGHISVKASKDG---ILKQVVPEYERLKDNYE--LLWDIPSNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWLM 895 ++ QK+IDQ+ S N D E + + + A+ + Sbjct: 678 -------------YLQLVGIMQKFIDQSISANTNYDPGKFEGGRVPMKVLLKDLLSAYKL 724 Query: 896 GLKTTYYLRSRSATS 910 G+KT YY +R S Sbjct: 725 GVKTLYYHNTRDGAS 739 >gi|260913957|ref|ZP_05920431.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] gi|260632044|gb|EEX50221.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] Length = 756 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 204/790 (25%), Positives = 339/790 (42%), Gaps = 87/790 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG L + ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGHLEPIDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI KE P+Y + AR + LR++ H + LY E+ + + G Sbjct: 65 AAADLISKESPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-EHVKKLVRMG 113 Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A LL + + + + L + RD F Y ++ L +Y + + G E Q Sbjct: 114 KYDASLLTDYCRE-EWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K ++ + FY+ S+F TP + +G R P Q SSC L Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPIWHLEAESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 A TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 351 ADITLFSPSDVPGLYEAFFADQTKFEELYLKYEQDPTIRK----RAVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L + + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L S AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNL-----GKLENLDELESLADLAVRALDALLDYQDYPVRAAKRSSLGRRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A ++ + E I ++ + AS+ LA+E G F + + +G+ PID Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYAKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + + ++ W+ L+K ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 TYKKDIDTLTQEPLH----YDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ VK++ G VV + LW+ +P++ Sbjct: 638 PRGHVSVKASKDGILKQVVPEYETLGENYELLWE-------------------LPNNDGY 678 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896 +H QK++DQA S N D + K+L A+ G Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYG 725 Query: 897 LKTTYYLRSR 906 LKT YY +R Sbjct: 726 LKTLYYQNTR 735 >gi|254471481|ref|ZP_05084883.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio sp. JE062] gi|211959627|gb|EEA94825.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio sp. JE062] Length = 716 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 193/661 (29%), Positives = 311/661 (47%), Gaps = 74/661 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 YER F F +LG Y Y L +G R + + RV M LAL + E A+ Sbjct: 95 YERKFRFPTFLGAFKFYTSYALKTFDGKR--YLERYEDRVVMTALALSRGD-EDLAMRMM 151 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + S F +TPT N+G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 152 DEIISNRFQPATPTFLNAGKKQRGELISCFLLRLEDNMESIGRSINSALQLSKRGGGVAL 211 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I G +S GV P +K+ D+ NQ G R+GA YL H D+ F Sbjct: 212 LLTNLREAGAPIKGVENQSSGVGPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILSF 271 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521 LD ++ D++ R ++ IPD+ + QN LFSP D+ +YG F EIA Sbjct: 272 LDTKRENADEKIRIKTLSLGVVIPDITFQLAKQNEEMYLFSP---HDVEKVYGIPFSEIA 328 Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D +I+ +K+ A ++ + + FE+G+P+I F+D N +P G ++ Sbjct: 329 VTEKYREMVDNPKIRK-KKMRAREFFQLLAEIQFESGYPYILFEDTANAVNPV--AGRIN 385 Query: 581 SSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI +N +S CNLGS+N+ D L ST+ TA Sbjct: 386 MSNLCSEILQVNEASTFKDDLSYAHLGSDISCNLGSLNIA-----RAMDGGDLGSTVETA 440 Query: 629 VRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V +++ ++ ++ N AIGLG M L I Y SPEA++ + Sbjct: 441 IRALTAVSEMSAIVSVPSVRRGNDESHAIGLGQMNLHGFLARELIHYGSPEAIDFTNIYF 500 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLAEVRDELAM 738 + +H + AS +A+ERG ++ F+ S + G F + + + ++ + Sbjct: 501 CIVLYHCLRASNAMARERGVSFKGFEDSQYASGAFFDKYVEKDWLPDTERVVALFEKFGI 560 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + +R W LK V T G+ N N A+ PT +I+ I + SI P Sbjct: 561 HIPTRAEWVALKDAVMTDGLLNRNLQAVPPTGSISYINNSTSSIHP-------------- 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R E I + Y + N D+L+ + A+EI P LI+ Sbjct: 607 -------IVSKIEIRK---EGKIGRVYYPAPFMNN-----DNLE-YYRDAYEIGPEALID 650 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++ Sbjct: 651 TYAAATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWKKGIKTIYYVRLRQ-MALEGTEVQ 709 Query: 918 G 918 G Sbjct: 710 G 710 >gi|127512874|ref|YP_001094071.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella loihica PV-4] gi|126638169|gb|ABO23812.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella loihica PV-4] Length = 762 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 209/779 (26%), Positives = 340/779 (43%), Gaps = 89/779 (11%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++ A GL +VS V ++ YDG+ + +I ++ LI E P+Y + Sbjct: 21 KIHRVITWAAKGLNNVSVSEVELRSHLQFYDGIPTEAIHETIIKAAADLISPESPDYQFL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 +AR + LR++ E LY ++ + +E G + +L Sbjct: 81 SARLAIFHLRKKAFG----------QFEPPSLY-DHVVKLVELGKYDTHILNDYSREELD 129 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 L + + + RD F Y ++ L +Y + + E Q ++ VA L +E Sbjct: 130 TLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACL-FANYPRET 188 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R +FY+ S+F TP + SG R P Q SSC L D L I Sbjct: 189 RLQYVKDFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 247 YVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ + L +R+ Q TLFSP +V L+D Sbjct: 307 PMWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIQGGMITLFSPSDVPGLYD 366 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + EFE Y YE+ E ++I AV L+ M+ TG +I D CN Sbjct: 367 AFFEDQAEFERLYVKYEQD----ESIRKKQIKAVELFSLMMQERASTGRIYIQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V V SNLC EI L + E A+C L ++NL A D+ Sbjct: 423 HSPFDAKVAPVRQSNLCLEIALPTKPLNNIDDPDGEIALCTLSALNLGA-----IKKLDE 477 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L S AVR LD+++D + I A K + R +G+G++ F + L + Y+ A Sbjct: 478 LESLADLAVRALDSLLDYQDYPIVSAHKGSMNRRTLGIGVINFANYLAKEGVRYSDGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDE-LAM 738 I ++ E I ++ + AS+ LA+E+GA +F + + +G+ PID+ L ++ DE L M Sbjct: 538 GITHKTFEAIQYYLLKASMNLAKEQGACPAFHETNYAKGILPIDTYKRDLDKICDEPLHM 597 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + W+ L+ +KT G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 598 D------WETLRGEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG- 650 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +LKQ ++ D + + S + ++P + + Sbjct: 651 ----------QLKQ-------VVPDFEKYQYSYELLWQMPGNEGYLQLVGL--------- 684 Query: 859 SASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGLKTTYYLRSRSATS 910 QK++DQ+ S N D P K + + + A+ G+KT YY +R S Sbjct: 685 ----MQKFVDQSISANTNYDPSRFPGAKVPMQVLLKDLLTAYKYGVKTLYYHNTRDGAS 739 >gi|52425047|ref|YP_088184.1| ribonucleotide-diphosphate reductase subunit alpha [Mannheimia succiniciproducens MBEL55E] gi|52307099|gb|AAU37599.1| NrdA protein [Mannheimia succiniciproducens MBEL55E] Length = 765 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 189/697 (27%), Positives = 308/697 (44%), Gaps = 54/697 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + + ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 14 LMVTKRDGQVEPLDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 73 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR+ KA H P ++++ Sbjct: 74 AAADLISKDAPDYQYLAARLAIFHLRK-----------KAYGH----FDPPRLYEHVKKL 118 Query: 264 VKARLLHESMM-DF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 V+ ES++ DF + + N L + RD F Y ++ L +Y + + G E Sbjct: 119 VRLGKYDESLLSDFSREEWDEMDNFLDHSRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 178 Query: 318 QAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L K + + FY+ +S+F TP + SG R P Q SSC L Sbjct: 179 QFLYILVAASLFSKYPAETRLDYIHRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 236 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G IPF K Sbjct: 237 IECDDSLDSINATSSAIIKYVSQRAGIGINAGAIRALGSPIRDGEAFHTGCIPFYKHFQT 296 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA Y WH++VE + L+ N G + R M+ I +R+ Sbjct: 297 AVKSCSQGGVRGGAATVYFPMWHLEVESLVVLKNNRGVEENRARHMDYGVQINRTMYQRL 356 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 357 IKGGDITLFSPSDVPGLYEAFFADQAKFEELYVKYEQDPTIRK----RTVKAVDLFSLLM 412 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG ++ D CN SP V V SNLC EI L N E A+C Sbjct: 413 QERASTGRIYVQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDEDGEIALCT 472 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL D D+L + AVR LD ++D + + AK+S+ RA+G+G++ Sbjct: 473 LSAFNL-----GKIDDLDELENLADLAVRSLDALLDYQDYPVPAAKRSSLGRRALGIGVI 527 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + + E I ++ + AS+ LA+E GA F + + +G+ Sbjct: 528 NYAYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKELGACEYFNETTYAKGIL 587 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID+ + D L + W++L+ + G+RNS A+ P+ T + I + Sbjct: 588 PIDT---YKKDVDNLT-SEPLHYDWEQLRTEILEFGLRNSTLTALMPSETSSQISNATNG 643 Query: 782 IDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817 I+P ++ VK++ G VV + K LWD Sbjct: 644 IEPPRGHISVKASKDGILKQVVPDYENLSDKYELLWD 680 >gi|126650013|ref|ZP_01722246.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. B14905] gi|126593185|gb|EAZ87147.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. B14905] Length = 697 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 190/700 (27%), Positives = 327/700 (46%), Gaps = 97/700 (13%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------AFEY------- 295 RY E V RL + ++ + YL ++ YE+DF A++Y Sbjct: 32 RYFLEYVNVRLRYFIDIEEKIRYLVDEGYYEKDFIDMYEMDFIKMLYKKAYDYNFRFPSF 91 Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 + YD Y + +G I E + + +A+ LA T KR+VE ++ ++ Sbjct: 92 MSASKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTVLAKRSVE--AMMEAYQ--P 147 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG + +L SCF ++ D + I + L++ GG+G + T +R LG Sbjct: 148 ATPTALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGD 207 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I ++ GVIP K+ ++ NQ G+R G+ YL +H D+E F+ +K DD Sbjct: 208 PIKEILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADD 267 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQAD 530 + R ++T IP +F + ++ LFSP D+ +YGK EI+ E Y D Sbjct: 268 KIRLATLSTGIIIPSIFFDLMKRDKDIVLFSP---YDIFKVYGKRMSEISISEMYYELLD 324 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +I+ ++++A L+ ++ FE+G+P+ F D N P +++G V SNLCTEI Sbjct: 325 NPKIRKIKRLNARRLYTEVKKAQFESGYPFEIFDDNVNEVHPLKNIGRVKMSNLCTEIL- 383 Query: 591 NSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +ET+V CNLGSI++ A N F+ + I TA+ +L NV Sbjct: 384 --QVQETSVITDQDQPNEYGLDVSCNLGSIDIHAASKVNDFE-----TLIDTAMHLLTNV 436 Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + + K+N ++GLG M L I Y S ++++ D ME +++++ Sbjct: 437 SQMTYIKNVPSVAKANRLMHSVGLGCMNLHGHLVTEGIMYGSKDSIDFMDRFMEAMNYYS 496 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WD 747 + +S+E+A+E+ + F+ S + G + + E + +P W+ Sbjct: 497 LKSSMEMAKEKAETFYRFEDSDYASGSYFDQYVNKNEEELSSAVLKALGNIPIITNKMWE 556 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 LK+ V G+ +S +AIAPT +I+ I + SI P + + V Sbjct: 557 LLKEDVMEYGLFHSYRLAIAPTGSISYIRSCTASISPCTERVEV---------------- 600 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 RD D I + + + ++ ++ A+++DP LI+ + QK + Sbjct: 601 -----RDYADSRTIYPMPH----------LTNENSHLYVEAYDVDPYDLIDLYAASQKHV 645 Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 DQ S+ LY+ D + ++L +Y AW+ G+K+ YY+R R Sbjct: 646 DQGISMTLYVTDNWTTEQLAKVYIYAWVKGIKSVYYVRQR 685 >gi|219883064|ref|YP_002478228.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter chlorophenolicus A6] gi|219862070|gb|ACL42411.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter chlorophenolicus A6] Length = 726 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 189/653 (28%), Positives = 292/653 (44%), Gaps = 79/653 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y++ F FE +LG Y Y L +G R +E + VA+GLA + ++ V Sbjct: 103 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVTMVALGLAAGDKALAEKLV--- 159 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT NSG + +L SCFL + D++ I A+ L+K GG+ Sbjct: 160 DEIIDGRFQPATPTFLNSGKAQRGELVSCFLLRIEDNMESISRAINSALQLSKRGGGVAF 219 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T VR GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 220 ALTNVRETGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 279 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + ++ LFSP +V ++ + + + Sbjct: 280 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKDEDMYLFSPYDVEKVYGMPFSDINVT- 338 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y D IK KI A ++ + + FE+G+P+I F+D N +P + G + S Sbjct: 339 EKYYEMVDDARIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GKIIMS 395 Query: 583 NLCTEITLNSSSEET---------------AVCNLGSINLLAHFANNQFDYDKLASTIRT 627 NLC+EI L S+ T CNLGS+N+ D L +T+ Sbjct: 396 NLCSEI-LQVSTPTTYNENLNYEVDGIGKDISCNLGSMNIA-----KAMDGGDLGATVEI 449 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D N +E + N AIGLG M L H+ Y SPE+++ + Sbjct: 450 AIRALTAVSDQSNITAVESVARGNRMSHAIGLGQMNLHGFLAREHVYYGSPESIDFFGKY 509 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIGLLAEVRDE 735 M ++FHAI AS +A+ERG + F+ S + G F P G E+ + Sbjct: 510 MAAVAFHAIRASNLIAKERGVTFDGFERSKYASGEFFDKYVTRSWLPTTERG--QELFAK 567 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794 + + W+ELK V G+ N N A+ PT +I+ I + SI P + + K Sbjct: 568 FGITLPTIADWEELKASVMEHGIYNQNLQAVPPTGSISYINNSTASIHPIAAKIEIRKEG 627 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G +L NE N+E D A+EI Sbjct: 628 KIGRTYFPAPYLTNE-----------------------NLEYYQD--------AYEIGYE 656 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 657 KIVDMYAAATEHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLR 709 >gi|56692701|ref|YP_164159.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore grouper iridovirus] gi|42517413|gb|AAS18079.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore grouper iridovirus] Length = 572 Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 166/587 (28%), Positives = 267/587 (45%), Gaps = 97/587 (16%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A + Y+ + F S+P L NSG +S CFL VPD ++G+ E L+ G Sbjct: 46 ASKLYSYSCAGWFGYSSPVL-NSGAGGLPIS-CFLMYVPDSIHGLISHTAELRWLSVLGG 103 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+ W VRG + KS G IPF+ + A QG R+G+ AY+ H D Sbjct: 104 GVAGHWDAVRG-------PSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPD 156 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + EFL +R TGD R+ +++ + D FM V ++ W L P+ Sbjct: 157 IIEFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNTS----------- 205 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHV 576 K + + A LW ++L F TG P++ F D N + + Sbjct: 206 ----------------KTVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTK 249 Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 G+ + SNLC EI L + + TAVC L S+NL +D K + VR+LDNV Sbjct: 250 GLKIRGSNLCNEIHLPTDKDRTAVCCLSSVNL------EMYDEWKDTDLVECVVRMLDNV 303 Query: 636 ID--------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 ++ ++ HT ++ R++G+G MG+ L IP+ A + DE Sbjct: 304 MEDFISRAPTLSAHTANAVAGAS-GERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIF 362 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 I A+SAS +LA E+G P D +G Sbjct: 363 GAIKAAALSASKKLAAEKGE--------------PPDLVG-------------------- 388 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 G+RN++ +A+AP A A + G S S++P N YV +G + N +L Sbjct: 389 --------YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLE 440 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +L++ ++ + + + + GS+ ++ P+ L++++ TAFEID M ++ A+ RQ+ + Sbjct: 441 RDLRELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHL 500 Query: 868 DQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 Q QS+NL+ + K KL ++R AW + K YYLR+++ + K Sbjct: 501 CQGQSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKANRTSRK 547 >gi|93005950|ref|YP_580387.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter cryohalolentis K5] gi|92393628|gb|ABE74903.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychrobacter cryohalolentis K5] Length = 758 Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 183/676 (27%), Positives = 301/676 (44%), Gaps = 51/676 (7%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+++ DG L ++ ++E A GL +VS V +++ Y+G+ D+ +I Sbjct: 6 KIQVTKRDGRLEPIELDKIHKVIEWAAHGLDNVSVSQVELKSHIQFYEGIKTRDIHETII 65 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKK--PQKATHHEMQCLYPEYFCRYI 260 S+ LI E P+Y + AR + LR+ Y K P H + + ++I Sbjct: 66 KSAADLISEDTPDYQYLAARLAIFHLRK----IAYNKFTPPHLYDHVKKLTDAGKYDQHI 121 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318 L S +FD L L + RD Y ++ + +Y + ++ + E PQ Sbjct: 122 -------LADYSRAEFD--ELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQ 172 Query: 319 AFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374 +M V M L +++E+ FY+ S F TP + SG R P Q SSC L Sbjct: 173 FLYMLVGMCLFSRYEKSERMNYVKRFYDATSEFKISLPTPIM--SGVRTPSRQFSSCVLI 230 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 231 ECGDSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTA 290 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 +QGG R GA + WH++VE L L+ N G + R M+ + R+ Sbjct: 291 VKCCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLI 350 Query: 495 QNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQ-ADRGEIKVFRKISAVALWRKML 550 + +LFSP + L+D + ++ FE Y YE A R R+I A L+ M+ Sbjct: 351 KGQDISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPAIRS-----RQIPAADLFSLMM 405 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N E A+C Sbjct: 406 QERASTGRIYIQNVDHCNTHSPFDATVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCT 465 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L ++NL N D ++ A I VR LD ++D + ++ A+ + R +G+G++ Sbjct: 466 LSAVNLGK--VENVSDIEEPAELI---VRALDALLDYQDYPVKAAQNGSMRRRTLGVGVI 520 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A+ + ++ E + F+ + AS +LA+E+GA +F + + QG+ Sbjct: 521 NYAYYLAKNGVRYSDDSAIGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGIL 580 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID+ + D++ L W+ L+ + G+RNS A+ P+ T + I + Sbjct: 581 PIDT---YKKDLDKIC-QEPLHLDWETLRGEITEHGLRNSTLTALMPSETSSQIANATNG 636 Query: 782 IDPSYQNLYVKSNMSG 797 I+P + +K++ G Sbjct: 637 IEPPRGLVSIKASKDG 652 >gi|332974188|gb|EGK11122.1| ribonucleotide-diphosphate reductase alpha subunit [Psychrobacter sp. 1501(2011)] Length = 758 Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 199/792 (25%), Positives = 346/792 (43%), Gaps = 83/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+M DG L + ++ ++ A GL +VS V +++ YDG+ D+ +I Sbjct: 7 LKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETIIK 66 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H +Y +E Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRK-IAYNQFEPPHLFDHVTKLTAAGKY-----DEH 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L S +FD L + + RD Y + + +Y + + + E PQ + Sbjct: 121 I---LQDYSREEFD--ELNEYIDHWRDMTLAYAAAEQMAGKYLVQDRVTKTVYESPQFLY 175 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 M V M L + ++E+ FY+ +S F S PT +G R P Q SSC L Sbjct: 176 MLVGMCLFASYDKSERLHYVKRFYD--ASSQFKISLPTPIMAGVRTPSRQFSSCVLIECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRTLYTRLIKGQ 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP +V L++ + +FE Y YE+ + + R + A L+ ++ Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEELYTEYEQDENIRK----RHVPAADLFSLLMQERA 409 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605 TG +I D CN SP V + SNLC EI L N E A+C L ++ Sbjct: 410 STGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCMEIALPTKPLDNINDEKGEIALCTLSAV 469 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL D + VR LD ++D + ++ A+ + R +G+G++ + Sbjct: 470 NL-----GEVQSLDDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAY 524 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A+ + ++ E + ++ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 525 YLAKNGVKYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDT 584 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 A++ D++ N +L W+ L+ +K G+RNS A+ P+ T + I + I+P Sbjct: 585 YK--ADL-DKIC-NEPLQLDWEALRSEIKEHGLRNSTLSALMPSETSSQIANATNGIEPP 640 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + VK++ G ++ + + L +D ++ ++ + +DG Sbjct: 641 RGLVSVKASKDG---ILKQVVPDILNLKDNYE--LLWQMPNNDG---------------- 679 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLK 898 ++ + QK+IDQ+ S N D E + + + + A+ +G+K Sbjct: 680 ----------YLKLVAVMQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVK 729 Query: 899 TTYYLRSRSATS 910 T YY +R + Sbjct: 730 TLYYHNTRDGAN 741 >gi|24373962|ref|NP_718005.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella oneidensis MR-1] gi|24348404|gb|AAN55449.1|AE015682_4 ribonucleoside-diphosphate reductase, alpha subunit [Shewanella oneidensis MR-1] Length = 762 Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 205/791 (25%), Positives = 338/791 (42%), Gaps = 93/791 (11%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++ A GL++VS V T+ +DG+ + +I S+ LI E P+Y + Sbjct: 21 KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ +P K H + +E G + + +L Sbjct: 81 AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 + + + RD F Y ++ L +Y + + E Q ++ VA L KE Sbjct: 130 IMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ + L +R+ + +LFSP +V L+D Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESISLFSPSDVPGLYD 366 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + EFE Y YE+ + + + + AV L+ M+ TG +I D CN Sbjct: 367 AFFEDQAEFERLYLQYEQDSSIRK----KTLKAVDLFSLMMQERASTGRIYIQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V + SNLC EI L + + E A+C L ++NL D + Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL-----GTITDLAE 477 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Y+ A Sbjct: 478 LEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739 + ++ E I F+ + AS+ LA+E+GA F + + QG+ PID+ RD + + Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYK-----RDLDKICS 592 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 L W+ L+ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 593 EPLHLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652 Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 VV F + LW M S+ Y ++ Sbjct: 653 KQVVPDFDTLKNNYELLWQ--MPSNEGY------------------------------LQ 680 Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909 QK++DQA S N D G+K+ D + A+ +G+KT YY +R Sbjct: 681 LVGIMQKFVDQAISANTNYDPARFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738 Query: 910 SVEKSTLKGVD 920 S + + ++ Sbjct: 739 SDQHDDITNIE 749 >gi|332141552|ref|YP_004427290.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] gi|327551574|gb|AEA98292.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] Length = 773 Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 206/792 (26%), Positives = 340/792 (42%), Gaps = 83/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G S + +++ +V A GL +VS V + YDG++ S++ LI Sbjct: 5 LFVTKRNGEKESIDLEKIHKVVTWAAKGLNNVSVSQVEIKAQIQFYDGINTSEIHETLIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI + P+Y + AR + LR++ E L+ E+ + ++ G Sbjct: 65 SAADLISTDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALF-EHVGKMVDMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYTPEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +K R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FANYDKATRMDYIRRFYDAASTFKLSLPTPIM--AGVRTPTRQFSSCVLIET 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ L +R+ ++ Sbjct: 291 SCSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKD 350 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + + E E Y + + I+ ++I A+ L+ + T Sbjct: 351 GYISLFSPSDVPGLYDAFFADQEKFEELYVKYENDDSIRK-KQIKAMELFSLFMQERAST 409 Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607 G ++ D CN SP V V SNLC EI L N + E A+C L + NL Sbjct: 410 GRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDENGEIALCTLSAFNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A + ++F ++LA AVR LDN++D + + A + R +G+G++ F L Sbjct: 470 GAIKSVDEF--EELAD---LAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A + + E + ++ + AS LA+E+GA F + + QG+ PIDS Sbjct: 525 AKNGVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDSYK 584 Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 +D + N WD L++ +K G+RNS A+ P+ T + I + I+P Sbjct: 585 -----KDLDSVCNEPLHYDWDALREEIKAHGLRNSTLSALMPSETSSQISNATNGIEPPR 639 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + +KS+ G V+ + RD ++ ++ D+ +DG Sbjct: 640 GFISIKSSKDG---VLKQVVPEYETLRDQYE--LLWDIPSNDG----------------- 677 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDF-----IYRQAWLMGLK 898 ++ QK+IDQ S N D PS G K+ + +G+K Sbjct: 678 ---------YLQLVGIMQKFIDQTISANTNYD-PSRYEGNKVPMKLLLKDLLTTYKLGVK 727 Query: 899 TTYYLRSRSATS 910 T YY +R S Sbjct: 728 TLYYHNTRDGAS 739 >gi|330858747|ref|YP_004415122.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2] gi|327397681|gb|AEA73183.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2] Length = 754 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGTGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G K YY +R + + Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737 >gi|269469190|gb|EEZ80729.1| ribonucleotide reductase, alpha subunit [uncultured SUP05 cluster bacterium] Length = 758 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 206/796 (25%), Positives = 346/796 (43%), Gaps = 95/796 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G + +++ +V A L+ VS V +DG+ ++ +I Sbjct: 5 IQVTKRNGKKEPVDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEEIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y ++AR + LR++ + P L+ E+ ++ + G Sbjct: 65 SAADLISTETPDYQYLSARLAIFHLRKKAFKSFTPPP----------LF-EHIKKFTDLG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + + + ++ L + + RD F Y ++ L +Y + + G E PQ + Sbjct: 114 IYDKDILDKYSKKEIKELDKYIDHWRDMKFSYAAVKQLEGKYLVQNRVTGEIYESPQLLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V M L +E E + R FY+ +S F TP + +G R P Q SSC L Sbjct: 174 VLVGMCL-FQEYEAKARMDIVKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLIEA 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL I A G+G + +R +G+ I G G IPF K + Sbjct: 231 DDDLDSISAAAGAIVKYVSQRAGIGINGGRIRAIGSPIRGGEATHTGCIPFYKHFHTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++V+E L L+ NTG D R ++ L +R ++ Sbjct: 291 SCSQGGVRGGAATLFYPFWHLEVKELLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLED 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +VS L+D + KEF+ YE YE+ + R E I A L+ K + Sbjct: 351 GDITLFSPHDVSGLYDSFFEDQKEFKRLYEQYEQDDSIRKET-----IKARELFAKFMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN V SNLC EITL + E A+C L Sbjct: 406 RANTGRIYLQNVDHCNTHGAFDAKQAPVRQSNLCMEITLPTKPLYSVQDENGEVALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 ++NL A + D+L VR LD+++D + I+ A+ ++ R +G+G+ Sbjct: 466 AVNLGALDS-----LDELEDITEIIVRALDSLLDYQDYPIKAAELASMNRRTLGIGVTNL 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ + ++ E + ++A+ AS +LA E G+ F + + +G+ P+ Sbjct: 521 AYYLAKNNAKYSDGSGNPLIHKTFEALQYYALKASNKLANELGSCPLFNETQYSKGIMPV 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 DS +V D N L WD L+K + G+RNS A+ P + + I + I+ Sbjct: 581 DSYK--KDVDD--FCNCDLELDWDALRKNIVATGLRNSTLTALMPCESSSQISNSTNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + +K + G +V + + K LW D+K +DG Sbjct: 637 PPRGFVSIKQSKDGILKQIVPEYEALKNKYELLW------DIKNNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKK-------LDFIYRQA 892 ++ + QK++DQ+ S N + D PS G K +D + +A Sbjct: 678 -------------YLQLCAIMQKFVDQSISTNTHYD-PSQFEGNKVPMKLFLMDLL--KA 721 Query: 893 WLMGLKTTYYLRSRSA 908 + G+KT YY +R Sbjct: 722 YKYGIKTLYYHTTRDG 737 >gi|326800311|ref|YP_004318130.1| ribonucleoside-diphosphate reductase, subunit alpha [Sphingobacterium sp. 21] gi|326551075|gb|ADZ79460.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobacterium sp. 21] Length = 705 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 172/599 (28%), Positives = 282/599 (47%), Gaps = 70/599 (11%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 RA+E+ +L + + +TPT N+G R +L SCFL + D L GI A+ E L+ Sbjct: 141 RALEYAEILINQEYQPATPTFLNAGKLRSGELVSCFLDEIGDSLSGISYAIDEAMKLSSI 200 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + VR G I G G+S GV+P +K+ DT NQ G+R GA YL +H Sbjct: 201 GGGVSFNISKVRARGEAIKGVEGRSSGVLPVMKIMEDTFSYANQLGQRPGAGAVYLNVFH 260 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+EEFLD +K D++ R ++ IPD FM+ + LF P V + Y Sbjct: 261 SDIEEFLDCKKINVDEKSRIKSLSIGVIIPDKFMQIAEHDEVCYLFYPHTVYQEYGQYLD 320 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E ++ + Y+ ++K RKI+A L K+ E+G+P++ FKD N + Sbjct: 321 EMDMT-KMYDELVSNPKVKK-RKINARHLLIKVAQTQKESGYPYLFFKDNANRGHALNGI 378 Query: 577 GVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLAST 624 G V SNLCTEI +N EE + CNLGS+N+ N ++ Sbjct: 379 GSVKFSNLCTEIMQLSEVSDINPYHEEDTIRYGISCNLGSLNIATTMENR-----RIKEV 433 Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++TA+R L V D+ + + +K+N ++GLG M L I Y S EA++ Sbjct: 434 VKTAMRSLTVVSDMTDIKMVPTIQKANRELHSVGLGAMNLHGFLAKNFITYESKEALDFC 493 Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----------FPI-DSIGLLAE 731 + ++F+++ S+E+A+ERG + F+ S + G FP+ D + L E Sbjct: 494 NVFFMMVNFYSLECSMEIAKERGVTFKGFENSDYANGAYFDKYINNDYFPVSDRVKELFE 553 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + R W++LK+ V G+ ++ MAIAP + + I + S+ P Sbjct: 554 -----GITIPDRAAWEKLKQDVMQHGVYHAYRMAIAPNQSTSYIMNATASVMP------- 601 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 +V+ ++ R+ D + Y + +D + +A+++ Sbjct: 602 --------------VVDTIEVREYGDSTTYYPMPY----------LNNDNYFYYKSAYDM 637 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 D ++ S Q+ +DQ S L+ + + + + L Y A MGLK+ YY R+R A+ Sbjct: 638 DQNNVLRLISVIQRHVDQGISTILHTNSKDTTRDLAKYYIYAHKMGLKSLYYTRTRKAS 696 >gi|220905096|ref|YP_002480408.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869395|gb|ACL49730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 781 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 169/624 (27%), Positives = 287/624 (45%), Gaps = 89/624 (14%) Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHF 351 +L RY +++G IE P+ F RVA +A +E + A +FY+L++S+ F Sbjct: 20 VLQKRYLRKNLDGKIIEAPRDLFWRVAAAIAAQEENYKNSSRTPNQLARDFYDLMTSWKF 79 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 80 LPNSPTLMNAGTELGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKD 139 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + T G + G + FL++ N + QGG R+GA L H D+ EF+ ++ G+ Sbjct: 140 SRVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEKEGE 199 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 ++ N + + + FM+ V + + L SP+ Sbjct: 200 ----FNNFNLSVGLTESFMQAVENDEQYDLVSPNN------------------------- 230 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V +++ A ++ ++ +++G P I F D N +P G + S+N C E L Sbjct: 231 GE--VMKRLPARDVFDLLVRKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLL 288 Query: 592 SSSEETAVCNLGSINLLA-HFANNQ--------FDYDKLASTIRTAVRVLDNVIDINCHT 642 CNLGSINL H ++ D+D+L + +VR LDNVID + Sbjct: 289 PFE----ACNLGSINLSCFHVPGHENSADPAAGIDWDELRRVVHLSVRFLDNVIDASRFP 344 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +++ ++ +R IGLG+MGF L L +PY S + +++ + M F+ AS ELA Sbjct: 345 LDRIGETVRKNRKIGLGVMGFADLLFQLGVPYDSQQGLDLGERIMAFVQGEGHRASAELA 404 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG + ++ S++ R K RN+ Sbjct: 405 LERGPFPAYGSSVF----------------------------------ARKKLGPYRNAT 430 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMI 821 IAPT T++ I G S ++P + + ++ + G+ V +N L+ L+ ++ Sbjct: 431 VTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEINPHFEAALESGGLFSHELM 490 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 D GSI +++ +P L+K TA +I P W + + Q+ D A S + L + Sbjct: 491 -DAVVAKGSIQDMDYLPAPLRKTFVTAMDIAPQWHLRMQAAFQRHTDNAVSKTVNLSNSA 549 Query: 882 GKK-LDFIYRQAWLMGLKTTYYLR 904 ++ + IY A+ G K R Sbjct: 550 TEQDIREIYWLAYQEGCKGVTVYR 573 >gi|68535548|ref|YP_250253.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium jeikeium K411] gi|68263147|emb|CAI36635.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium jeikeium K411] Length = 720 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 188/666 (28%), Positives = 305/666 (45%), Gaps = 84/666 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F+ +LG Y Y L +G R +E + VA+GLA +TE V+ Sbjct: 99 YAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGDTELASNLVD-- 156 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + F +TPT N G + + SCFL + D++ I ++ L+K GG+ Sbjct: 157 -EIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 215 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + VR GA I +S GVIP +K+ D NQ G R+GA YL H D+ F Sbjct: 216 LLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLSAHHPDILRF 275 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA- 521 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F Sbjct: 276 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADVS 332 Query: 522 -YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E+YE + I+ KI+A A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 333 ITEHYEEMVEDPRIRK-SKINARAFFQTLAEIQFESGYPYIMFEDTVNKANPIE--GRIT 389 Query: 581 SSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI S+ E CNLGS+N+ D + + TI TA Sbjct: 390 HSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIA-----KAMDSEDFSKTIETA 444 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + ++ ++ N AIGLG M L HI Y S EA++ + Sbjct: 445 IRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALDFTNAYF 504 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741 + + A+ AS ++AQERG + +F+ S + G F P + +R ++ N + Sbjct: 505 ATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERIR-QIIGNSS 563 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++P W +LK V+ G+ N N AI PT +I+ I + SI P + ++ Sbjct: 564 IQVPTAQDWQQLKDDVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIRK---- 619 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853 +G IG + + +D + + A+EI Sbjct: 620 ------------------------------EGKIGRVYYPAPYMTNDNLEYYEDAYEIGY 649 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R R T++ Sbjct: 650 EKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIRLRQ-TALT 708 Query: 913 KSTLKG 918 + ++G Sbjct: 709 GTEVEG 714 >gi|9632790|ref|NP_049845.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4] gi|417656|sp|P32282|RIR1_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Protein B1; AltName: Full=Ribonucleotide reductase gi|5354414|gb|AAD42621.1|AF158101_208 NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4] gi|509024|gb|AAA32527.1| ribonucleoside diphosphate reductase [Enterobacteria phage T4] Length = 754 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 209/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNAGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPSEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK + G F N + N DL+ D + GN Sbjct: 629 YEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G+K YY +R + + Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737 >gi|85711600|ref|ZP_01042657.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina baltica OS145] gi|85694460|gb|EAQ32401.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina baltica OS145] Length = 777 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 203/802 (25%), Positives = 340/802 (42%), Gaps = 89/802 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + G N ++ ++ A GL +VS+ V +++ YDG+ D+ +I Sbjct: 4 QLFVTKRSGQREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR+ +P + H + + E+ Sbjct: 64 KAAADLISEEAPDYQYMAARLAIFHLRKRAYGKF--EPPRLYDHVKKMV--------DEK 113 Query: 263 GVKARLLHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 A LL + S +FD + + + RD F Y ++ L ++Y + + G E Q Sbjct: 114 RYDAHLLEDFSEQEFD--QMDEIIDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQF 171 Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L ++ + FY+ S+F TP + SG R P Q SSC L Sbjct: 172 LYILVAACLFANYPKSTRMDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G IPF K Sbjct: 230 TGDSLDSINATASAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH+++E L L+ N G + R ++ L +R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEIENLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLVK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 + TLFSP +V L+D + +EFE Y YE + + ++I A+ L+ + Sbjct: 350 DDFITLFSPSDVPGLYDAFFEDQEEFERLYVQYENDENIRK----KRIKAIELFSLFMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN SP V V SNLC EI L N E A+C L Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSHVNDEEGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL + D+++LA AVR LD+++D + + A + R +G+G++ F Sbjct: 466 AFNLGK--IESLSDFEELAD---LAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E I F+ + AS+ELA+E+G F + + QG+ P Sbjct: 521 AYYLAKHGVKYSDGSANGLVHRTFEAIQFYLMKASMELAKEKGKCPKFNETTYSQGILPT 580 Query: 724 DSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D+ L A + L L W++L+K ++ GMRNS A+ P+ T + I + Sbjct: 581 DTYKKDLDAFCSEPL------HLDWEQLRKDIQEHGMRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK++ G + ++ D + + + +IPD+ Sbjct: 635 IEPPRGFVSVKASKDG------------------VTKQVVPDYENLKNNYELLWQIPDNK 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWL 894 + QK++DQ S N D +Q A+ Sbjct: 677 GYLQLVGI-------------MQKFVDQTISANTNYDPGKFNGAKVPMKQLLQDLLTAYK 723 Query: 895 MGLKTTYYLRSRSATSVEKSTL 916 MG+KT YY +R + +S + Sbjct: 724 MGVKTLYYHNTRDGAADNQSDI 745 >gi|56460471|ref|YP_155752.1| ribonucleotide-diphosphate reductase subunit alpha [Idiomarina loihiensis L2TR] gi|56179481|gb|AAV82203.1| Ribonucleotide reductase, alpha subunit [Idiomarina loihiensis L2TR] Length = 776 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 87/806 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + G N ++ ++ A GL +VS+ V +++ YDG+ D+ +I Sbjct: 4 QLYVTKRSGEREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR+ ++ P+ + +++ + E+ RY E Sbjct: 64 KAAADLISEEAPDYQYMAARLAIFHLRKRAYGK-FEPPR--LYDQVKKMVAEH--RYDEH 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 L E + + + L + RD F Y ++ L ++Y + + G E Q Sbjct: 119 ------LLEDYTEAEFDQMDEILDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L ++ + FY+ S F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFANYPKSTRMDYVKRFYDAASEFKISLPTPIM--SGVRTPTRQFSSCVLIEA 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R ++ +R+ ++ Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRTMYQRLIKD 350 Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + + EFE Y YE+ E ++I A+ L+ + Sbjct: 351 DYITLFSPSDVPGLYDAFFEDQDEFERLYLQYEQD----ESIRKKRIKAIELFGLFMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG ++ D CN SP V + SNLC EI L N E A+C L + Sbjct: 407 ASTGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLSHVNDEEGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL N +++ LA AVR LD+++D + + A + R +G+G++ F Sbjct: 467 FNLGK--IENLGEFENLAD---LAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINFA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS+ LA+ERGA F + + QG+ P D Sbjct: 522 YYLAKHGVKYSDGSANGLVHQTFEAIQYYLMQASMNLAKERGACPKFNETTYSQGIMPTD 581 Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + L +V DE L WD+L+ +K GMRNS A+ P+ T + I + I+ Sbjct: 582 TYKKDLDKVCDE-----PLHLDWDKLRADIKQHGMRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + +KS+ G VV + + K LW +IP++ Sbjct: 637 PPRGFVSIKSSKDGVTKQVVPDYENLKDKYELLW-------------------QIPNN-- 675 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWLM 895 +E QK++DQ S N D + +Q A+ + Sbjct: 676 -----------KGYLELVGIMQKFVDQTISANTNYDPSKFQAGKVPMKQLLQDLLTAYKL 724 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921 G+KT YY +R + +S + G Sbjct: 725 GVKTLYYHNTRDGAADNQSDIAARKG 750 >gi|170718503|ref|YP_001783715.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus somnus 2336] gi|168826632|gb|ACA32003.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus somnus 2336] Length = 756 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 204/794 (25%), Positives = 338/794 (42%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL++VS +V +++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ H E LY ++ + + G Sbjct: 65 AAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFEPPKLY-DHVKKLVRMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L + + L + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASL-FSRYPKETRLDYIHRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V + SNLC EI L + + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNLGALENLDE-----LEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L ++ Y+ A ++ + E I ++ + AS+ LA+E GA F + + QG+ PID Sbjct: 522 YYLAKNNVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + + ++ ++ P W+ L+K ++ G+RNS A+ P+ T + I + Sbjct: 582 TY--------KKDIDNLTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPD 839 I+P ++ +K++ G V N + + LWD IP Sbjct: 634 GIEPPRGHVSIKASKDGILKQVVPDYENLGENYELLWD-------------------IPS 674 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---A 892 + +H QK+IDQA S N D E + + + A Sbjct: 675 NDGYLHLVGI-------------MQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + GLKT YY +R Sbjct: 722 YKYGLKTLYYQNTR 735 >gi|163847312|ref|YP_001635356.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus aurantiacus J-10-fl] gi|222525156|ref|YP_002569627.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus sp. Y-400-fl] gi|163668601|gb|ABY34967.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chloroflexus aurantiacus J-10-fl] gi|222449035|gb|ACM53301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chloroflexus sp. Y-400-fl] Length = 822 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 181/646 (28%), Positives = 302/646 (46%), Gaps = 57/646 (8%) Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351 +L RY L + +G IE P+ F RVA +A + + E+RA FY+L++ +F Sbjct: 18 VLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASAEQVEERAERFYHLMTQGYF 77 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTL N+G QLS+CF+ + D+L I+ L+ A++ + GG G ++ +R Sbjct: 78 EPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFSFSRLRPRN 137 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + T G + G + F+ V N + A+ QGG R+GA L H D+ EF+ + +T Sbjct: 138 DVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFITCKLDT-- 195 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + + N + I D FM+ V + DE DL + +IA + + Sbjct: 196 --TKITNFNISVAITDAFMRAVER---------DEEYDLINPRTGLGQIASRDGLKHPLT 244 Query: 532 GEIKVFR----KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 GE+ V ++ A ++ ++ TG P + F D N +P H+G ++N C E Sbjct: 245 GEVLVPAGQPMRLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGEYEATNPCGE 304 Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 L + VCNLGSINL + D++ L + + R LDNVID N + +E+ Sbjct: 305 QPLLAYD----VCNLGSINLGKFVTDAGTIDWESLRDVVHESTRFLDNVIDANHYPLEQI 360 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + + R IGLG+MG+ L L IPY S +A+++A + M FI + AS +LA+ERG Sbjct: 361 TQLSQRIRRIGLGVMGWADMLVRLGIPYNSAQAIDLARQVMRFIDEESKVASEQLARERG 420 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + ++ S+W R + + R RL +RN N + Sbjct: 421 PFPEWEYSIWGPDA--------TCARRPDGSRIRPQRL-------------LRNCNVTTV 459 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT TI+ I G S I+P + + + +N V + K+ + + ++ + Sbjct: 460 APTGTISIIAGCSSGIEPLFAIAFWRYQADTRMLDINQDFVAQAKREGWYSDELMERIA- 518 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885 G I + E +P ++++ TA +I P W + + Q++ D A S + + E + ++ Sbjct: 519 DTGHIHHPE-VPASVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEATPDQV 577 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK-LNAVPVTD 930 Y A+ +G K R S + ST G GK P +D Sbjct: 578 REAYELAFRLGCKGITVYRDGSRANQVLST--GSTGKSAEPAPASD 621 >gi|330507668|ref|YP_004384096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta concilii GP-6] gi|328928476|gb|AEB68278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta concilii GP-6] Length = 676 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 182/639 (28%), Positives = 288/639 (45%), Gaps = 89/639 (13%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EK 335 +A+DLK + A ++L RY L G +E P F RVA ++ E+ + Sbjct: 103 VADDLKLSVNAA------EVLKKRYLLRDERGDVVETPGEMFGRVADHISKAESKYGGDV 156 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E F ++ + F+ ++PTL NS QLS+CF+ V D L GIF AL+ A++ + Sbjct: 157 ESYRSLFLQMMRNLEFLPNSPTLMNSRLELGQLSACFVLPVTDSLPGIFDALKNMALIHQ 216 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG G ++ +R + T G + G + F+++ + + QGG+R+GA L Sbjct: 217 SGGGTGFSFSRLRPKDDVVRATGGVASGPVSFMRIFDTATDVIKQGGRRRGANMGILRVD 276 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EF++ ++ G + N + D FM++ L +P L G Sbjct: 277 HPDIMEFIEAKERPG----FLENFNLSVAATDEFMEKSRGEGEIDLINPR-----TGLAG 327 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 + A + A + WR G P I F D N P Sbjct: 328 GRLKAAE--------------LLGLIATSAWR--------GGDPGIIFIDRINAAHPLP- 364 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 G + ++N C E L CNLGSINL + D+D+LA + AVR LD+V Sbjct: 365 -GEIEATNPCGEQPLLPYES----CNLGSINLSRLVRKGELDWDRLAELVSLAVRFLDDV 419 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID+N + + +++ + R IGLG+MGF L ++I YASP+AV +A++ M FIS HA Sbjct: 420 IDMNRFPLPQIEEATLSRRKIGLGVMGFADMLIQMNISYASPQAVALAEKLMGFISEHAR 479 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVK 754 + S L +ERG++ F +SRL W Sbjct: 480 AQSARLGEERGSFPLFD----------------------------SSRLRGWS------- 504 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK-QR 813 MRN+ IAPT TI+ I G S I+P + +V+ + G + S L ++ +R Sbjct: 505 --AMRNATVTTIAPTGTISIIAGTSSGIEPLFALAFVRRVLEGARLLEVSPLFEKMAMER 562 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 ++ + +L + GS+ I +P DLK++ TA +I + + QK+ D A S Sbjct: 563 GIYTPDLKVELAWR-GSVQEIAGLPQDLKELFRTALDISAQQHVRIQAAFQKYTDNAVSK 621 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 + L E + + +YR A+ +G K R S + V Sbjct: 622 TVNLPAEATVSDVLQVYRLAYDLGCKGVTVFRYGSRSQV 660 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 8/105 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++ KR G V F KI+ AI KAF AV + R+ + + E+ +R Sbjct: 4 RIRKREGRVVEFQTEKIALAISKAFRAVGREEEDAPFRLAERVAKEAEERFSRT------ 57 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 I +E+IQD VE +L+ +G+ + + Y+LYR++R+++R A+ + Sbjct: 58 --IPGVEEIQDLVERALISAGYADVAKAYILYRQKRTEIREAKRY 100 >gi|258404144|ref|YP_003196886.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfohalobium retbaense DSM 5692] gi|257796371|gb|ACV67308.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfohalobium retbaense DSM 5692] Length = 742 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 174/618 (28%), Positives = 293/618 (47%), Gaps = 84/618 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351 +L RY G +E PQ F RVA +A ET +E A FY+L++S F Sbjct: 19 VLRKRYVRKGPEGEEMETPQELFWRVAAAIAASETAYEQTPFSQEALARRFYDLMASCRF 78 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTL N+GT QL++CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 79 FPNSPTLMNAGTELGQLAACFVLPVGDSMEEIFDAIKYAALIHKSGGGTGFSFSRLRAAD 138 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + T G + G I FL++ N V QGG R+GA L H D+ EF+ +++ G+ Sbjct: 139 SRVGSTGGVASGPISFLRIFNTATEQVKQGGTRRGANMGILRVDHPDILEFIRVKEREGE 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 ++ N + + + FM+RV +A + L +P ++ L +E Sbjct: 199 ----LNNFNLSVALTEDFMRRVEADAEYPLIAPQSEKEVGRLRARE-------------- 240 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 ++ ++ +E+G P I F D N +P +G + ++N C E L Sbjct: 241 -------------VFTLLVQKAWESGDPGIIFLDRINRDNPTPQLGDIEATNPCGEQPLL 287 Query: 592 SSSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL + FA+ + D++ L ++ AVR LDNVID + + + + Sbjct: 288 PYE----ACNLGSINL-SRFADAPAQELDWEGLRESVHLAVRFLDNVIDASVYPLPQITD 342 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +R IGLG+MG+ L+ L I Y S +A+ + ++ M+FI A SAS +LA+ERG + Sbjct: 343 QVKRNRKIGLGIMGWADLLYQLRIAYDSRQALSLGEKVMDFIQKEARSASKDLARERGPF 402 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 ++ S VF ++G P+ RN+ IAP Sbjct: 403 PAYADS-----VFGKQNLG-----------------PY------------RNATTTTIAP 428 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827 T T++ + G S I+P + +V+ M G+ V N +++ + ++ ++ Sbjct: 429 TGTLSILAGCSSGIEPLFALSFVREVMDGERLVETNPIFRQAMEEAGCASQRLLDEVA-R 487 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 G++ ++E +PDD++ + TA +ID + + QK+ D A S + L E + + + Sbjct: 488 KGTVRDMELVPDDMRNVFVTAMDIDGEAHLRMQAAFQKYTDNAVSKTVNLPHEATQEDIR 547 Query: 887 FIYRQAWLMGLKTTYYLR 904 IY A+ G K R Sbjct: 548 HIYWLAYEQGCKGVTVYR 565 >gi|113461339|ref|YP_719408.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus somnus 129PT] gi|112823382|gb|ABI25471.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Haemophilus somnus 129PT] Length = 756 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 204/794 (25%), Positives = 338/794 (42%), Gaps = 95/794 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL++VS +V +++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ H E LY ++ + + G Sbjct: 65 AAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFEPPKLY-DHVKKLVRMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L + + L + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAASL-FSRYPKETRLDYIHRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V + SNLC EI L + + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A ++ L AVR LD ++D + + AK+S+ R++G+G++ + Sbjct: 467 FNLGALENLDE-----LEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L ++ Y+ A ++ + E I ++ + AS+ LA+E GA F + + QG+ PID Sbjct: 522 YYLAKNNVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + + ++ ++ P W+ L+K ++ G+RNS A+ P+ T + I + Sbjct: 582 TY--------KKDIDNLTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPD 839 I+P ++ +K++ G V N + + LWD IP Sbjct: 634 GIEPPRGHVSIKASKDGILKQVVPDYENLGENYELLWD-------------------IPS 674 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---A 892 + +H QK+IDQA S N D E + + + A Sbjct: 675 NDGYLHLVGI-------------MQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + GLKT YY +R Sbjct: 722 YKYGLKTLYYQNTR 735 >gi|228861160|ref|YP_002854183.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51] gi|227438834|gb|ACP31146.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51] Length = 754 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPADRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G K YY +R + + Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737 >gi|291290451|dbj|BAI83246.1| ribonucleotide reductase A subunit [Enterobacteria phage AR1] Length = 754 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENVKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G K YY +R + + Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737 >gi|269217730|ref|ZP_06161584.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212665|gb|EEZ79005.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 712 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 188/660 (28%), Positives = 304/660 (46%), Gaps = 75/660 (11%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 FD V Y + F F +LG Y Y L +G+R +E + VA+ LA + Sbjct: 82 FDFVKSLYKAAYAKKFRFPTFLGAFKYYTSYTLKTFDGTRYLERYEDRVCMVALTLARGD 141 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENA 391 + AV+ + S F +TPT N+G +L SCFL + D++ I + Sbjct: 142 ---QDLAVDLMEEIISGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSAL 198 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + + +R LGA I +S GV P +K+ D+ NQ G R+GA Y Sbjct: 199 QLSKRGGGVALNLSNLRELGAPIKRIQNQSSGVNPVMKLLEDSFSYANQLGARQGAGAVY 258 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 259 LHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKNNEDMYLFSPYDVERVY 318 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E ++ E Y D I+ KI+A A ++ + + FE+G+P+I F+D N + Sbjct: 319 GVPFTEISVS-EKYREMVDDKRIRK-SKINARAFFQTLSEIQFESGYPYIVFEDTVNAAN 376 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619 P + G V SNLC+EI S + E CNLGS+N+ D Sbjct: 377 PIK--GKVTMSNLCSEILQVSEASEYNPDLSYAHVGKDISCNLGSMNIA-----KAMDSP 429 Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 L T+ TAVR L V D+ + ++ ++ N +IGLG M L + Y S E Sbjct: 430 DLGKTVETAVRALTAVSDMTDIRSVPSIERGNAMSHSIGLGQMNLHGYLGRERVFYGSEE 489 Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-----GLLAEV 732 ++ + + FHAI AS+E+A+ERG ++ F+ S + G F + +V Sbjct: 490 GLDFTNMYFYTVLFHAIRASMEIARERGERFAGFEDSTYATGEFFDKYVEGAWEPTTPKV 549 Query: 733 RDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R+ A ++ + W L++ V+ GM N N A+ PT +I+ I + SI P Sbjct: 550 RELFANVHIPTSEDWAALREDVRRYGMYNQNLQAVPPTGSISYINHSTSSIHP------- 602 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT 847 +V++++ R +G IG + + +D + + Sbjct: 603 --------------IVSKIEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQD 635 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A+EI P +I++ + + +DQ SL L Y D + + ++ Y AW G+KT YY+R R Sbjct: 636 AYEIGPEKIIDTYAAATQHVDQGLSLTLFYPDTVTTRDVNRNYIYAWRKGIKTLYYMRIR 695 >gi|228861542|ref|YP_002854563.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14] gi|227438558|gb|ACP30871.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14] Length = 754 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200 + ++ G SF+ +++ ++ A G + + E Y+N + DG++ D++T Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254 +I ++ I +EP+Y V AR L+ LR+ V +P+ H C+ PE Sbjct: 59 IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNAGKYDPE 116 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312 +Y E ++ +L + +K+ERD F Y G L ++Y + G Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162 Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ FM + M L E ++ K + FY +S+ TP + T Q SSC Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + D L I A G+G + +R G+ I + GVIPF K Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA AY WH++VE L L+ N G + R M+ + DL M+ Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342 Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R +N TLFSP E+ +L+ Y K+ + E YE I+ ++I A L+ ++ Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604 T T ++ F D N +P + + SNLC EI + NS E +C L + Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461 Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 F + FD+ DK+ VR LDN++D + + +A+K+ R +G+G+ Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A ++ E E + + I AS++LA+E+G + + W +G Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID + D++A + W L++ +K G+RNS A+ P + + + + Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + VK + G F N + N DL+ D + GN Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892 K + T I KW+ Q+ S N Y D P GK D +Y Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717 Query: 893 WLMGLKTTYYLRSRSATSVE 912 W G K YY +R + + Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737 >gi|109898788|ref|YP_662043.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas atlantica T6c] gi|109701069|gb|ABG40989.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Pseudoalteromonas atlantica T6c] Length = 771 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 208/797 (26%), Positives = 335/797 (42%), Gaps = 91/797 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 KL + G S + +++ ++ A GL +VS V + + YDG+ D+ LI Sbjct: 4 KLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETLI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + P+Y + AR + LR++ ++ P H +Y + + Sbjct: 64 RSAADLISTDAPDYQYLAARLAIFHLRKKAYGQ-FEPPALFAHVTNMVEMQKYDQHLLSD 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 +A + M D+ + + RD F Y ++ L +Y + + G E Q Sbjct: 123 YSEAEF--QEMDDY--------IDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L + K+ R FY+ S F TP + +G R P Q SSC L Sbjct: 173 YILVAACL-FADYPKDSRMEYIKRFYDATSKFKISLPTPIM--AGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 AGDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R ++ L +R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 + +LFSP +V L+D + +FE Y YE+ + +I AV L+ + Sbjct: 350 DQHISLFSPSDVPGLYDAFFADQPKFEELYVKYEQDDSIRKT----QIKAVELFSLFMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN SP V + SNLC EI L N + E A+C L Sbjct: 406 RASTGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + F A AVR LDN++D + + A + R +G+G++ F Sbjct: 466 AFNLGAIESLEDF-----AEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS LA+E+GA F + + QG+ PI Sbjct: 521 AYYLAKNGVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPI 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D++ N WD L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 581 DT---YKKDLDKIC-NEPLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIE 636 Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P ++ VKS+ G VV + + + K LW DL +DG Sbjct: 637 PPRGHISVKSSKDGVLKQVVPEYELLKDKYELLW------DLPSNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAW 893 ++ QK++DQ S N D + G K+ D + A+ Sbjct: 678 -------------YLQLTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLL--TAY 722 Query: 894 LMGLKTTYYLRSRSATS 910 +G+KT YY +R + Sbjct: 723 QLGVKTLYYHNTRDGAA 739 >gi|71065820|ref|YP_264547.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter arcticus 273-4] gi|71038805|gb|AAZ19113.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychrobacter arcticus 273-4] Length = 758 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 179/675 (26%), Positives = 305/675 (45%), Gaps = 49/675 (7%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+++ DG L + ++ ++E A L++VS V +++ Y+G+ D+ +I Sbjct: 6 KIQVTKRDGRLEPIDLDKIHKVIEWAAHNLENVSVSQVELKSHIQFYEGIKTRDIHETII 65 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E P+Y + AR + LR+ + + P H + +Y + + Sbjct: 66 KSAADLISETTPDYQYLAARLAIFHLRK-IAYNRFTPPHLYDHVKKLTDAGKYDAHILAD 124 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 +A +FD L L + RD Y ++ + +Y + ++ + E PQ Sbjct: 125 YSRA--------EFD--ELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQFL 174 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 +M V M L + + E+ FY+ S F TP + SG R P Q SSC L Sbjct: 175 YMLVGMCLFASYDKAERLDYVKRFYDATSEFKISLPTPIM--SGVRTPSRQFSSCVLIEC 232 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 233 GDSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVK 292 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH++VE L L+ N G + R M+ + R+ + Sbjct: 293 CCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIKG 352 Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +LFSP + L+D + ++ FE Y YE I+ R+I A L+ M+ Sbjct: 353 QDISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDP---TIRS-RQIPAADLFSLMMQER 408 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V + SNLC EI L N + E A+C L + Sbjct: 409 ASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEAGEIALCTLSA 468 Query: 605 INL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +NL + H + D ++ A I VR LD ++D + ++ A+ + R +G+G++ Sbjct: 469 VNLGKVEHVS----DIEEPAELI---VRALDALLDYQDYPVKAAQNGSMRRRTLGVGVIN 521 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A+ + ++ E + F+ + AS +LA+E+GA +F + + QG+ P Sbjct: 522 YAYYLAKNGVRYSDDSALGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILP 581 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + D++ L W+ L+ + T G+RNS A+ P+ T + I + I Sbjct: 582 IDT---YKKDLDKIC-QEPLHLDWETLRTEITTHGLRNSTLTALMPSETSSQIANATNGI 637 Query: 783 DPSYQNLYVKSNMSG 797 +P + +K++ G Sbjct: 638 EPPRGLVSIKASKDG 652 >gi|320533558|ref|ZP_08034211.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134228|gb|EFW26523.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 718 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 190/660 (28%), Positives = 297/660 (45%), Gaps = 71/660 (10%) Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKET 333 + V A Y F FE +LG Y Y L +G R + F RV M L L + Sbjct: 87 EFVKTAFKAAYAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLADG 144 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 + E+ ++ + + S F +TPT N G + + SCFL + D++ I + Sbjct: 145 D-EQLTLDLVDEMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQ 203 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R +GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 204 LSKRGGGVALLLSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 263 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 264 HAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYG 323 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 + + + E Y D G IK +KI+A ++ + + FE+G+P++ F+D N +P Sbjct: 324 MPFADINVT-EKYREMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNRANP 381 Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620 + G V SNLC+EI S E CNLGS+N+ D Sbjct: 382 IK--GKVVMSNLCSEILQVSEPSELNEDLTFAHVGKDISCNLGSLNIA-----KTMDSPD 434 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 A TIRTAVR L V D + ++ + NH AIGLG M L I Y S E Sbjct: 435 FARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHESHAIGLGQMNLHGFLARERIHYGSEEG 494 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVR 733 ++ + + F A++AS E+A ERG ++ F+ S + G F D + + V+ Sbjct: 495 LDFTNVYFASVLFAALTASNEMAVERGESFVGFEDSTYASGEFFEKYVTQDFVPVTERVK 554 Query: 734 DELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + A + +R W EL ++VK G+ N N A+ PT +I+ I + SI P + Sbjct: 555 EIFAASSVHVPTREDWAELAEKVKKGGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKVE 614 Query: 791 V-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + K G F+ N+ +L Y+ A+ Sbjct: 615 IRKEGKIGRVYYPAPFMTND-------------NLDYY------------------RDAY 643 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R A Sbjct: 644 EIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNRAQIYAWRKGIKTLYYIRLRQA 703 >gi|92112512|ref|YP_572440.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Chromohalobacter salexigens DSM 3043] gi|91795602|gb|ABE57741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Chromohalobacter salexigens DSM 3043] Length = 723 Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 189/677 (27%), Positives = 318/677 (46%), Gaps = 82/677 (12%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332 DF + + Y F F+ +LG Y Y L R + + F RV M L L + Sbjct: 90 DFPFIKSLFERAYAVKFRFQSFLGAFKYYTSYTLKTFDGRRYL-ERFEDRVCMVALTLAQ 148 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + E A + + + F +TPT N G + +L SCFL + D++ I ++ Sbjct: 149 GD-EALARQLVDEIIHGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSAL 207 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + +R GA I +S G+IP +K+ D NQ G R+GA Y Sbjct: 208 QLSKRGGGVAFLLSNIREAGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVY 267 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 268 LNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEPMYLFSP---YDVE 324 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 ++YGK F +I+ E Y D I+ KI+A L++ + + FE+G+P++ F+D N Sbjct: 325 NVYGKPFGDISVTEKYYEMVDDARIRK-TKINARELFQTLAEVQFESGYPYVMFEDTVNR 383 Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFD 617 +P G ++ SNLC+EI +N+ S+ E CNLGS+N+ ++ F Sbjct: 384 ANPI--AGRINMSNLCSEILQVNTPSDYEADLGYERIGEDISCNLGSLNIAKTMDSSDF- 440 Query: 618 YDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +T+ TA+R L V ++ + ++ ++N AIGLG M L HI Y S Sbjct: 441 ----GATVETAIRGLTAVSEMSDIRSVPSIAEANKQSHAIGLGQMNLHGYLAREHIHYGS 496 Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS---------I 726 E ++ + +++HA+ AS LA ERG A++ F+ S + GV+ D Sbjct: 497 EEGLDFTNLYFYTVTYHALRASNRLAIERGRAFAGFEASDYASGVY-FDKYTEQAWGPRT 555 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + E+ D+ ++ ++ W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 556 ARVRELFDKAGIHVPTQEDWRELKASVMAHGLFNRNLQAVPPTGSISYINHSTSSIHP-- 613 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842 +V++++ R +G +G + + DD + Sbjct: 614 -------------------VVSKIEIR-------------KEGKLGRVYYPAPYLNDDNQ 641 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 642 DYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTLY 701 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R A ++E + ++G Sbjct: 702 YVRLRQA-ALEGTEVEG 717 >gi|308049657|ref|YP_003913223.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Ferrimonas balearica DSM 9799] gi|307631847|gb|ADN76149.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Ferrimonas balearica DSM 9799] Length = 757 Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 214/801 (26%), Positives = 335/801 (41%), Gaps = 101/801 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + +++ ++ A GL +VS V YDG+ + LI Sbjct: 5 LLVTKRDGRKEPIDLEKIHRVIYWAAMGLDNVSVSQVELAAQIYFYDGIETEAIHETLIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ P + ++ + Sbjct: 65 AAADLISADNPDYQYLAARLAVFHLRKKAFGQ---------------FEPPHLYDHVTKL 109 Query: 264 VKARLLHESMM------DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315 V+AR E ++ +FD L + + RD F Y ++ L +Y + + G E Sbjct: 110 VQARRYDEHLLADYSREEFD--ELNAYIDHWRDMKFSYAAIKQLEGKYLVQNRVTGEVYE 167 Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 Q +M VA L + K+ R FY+ S F TP + SG R P Q SS Sbjct: 168 SAQFLYMLVAACL-FADYPKDVRLSYVKRFYDATSKFKISLPTPIM--SGVRTPTRQFSS 224 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G++PFLK Sbjct: 225 CVLIECGDSLDSISATSTSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGMLPFLKH 284 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE+ L L+ N G D R M+ I Sbjct: 285 FQTAVKSCSQGGVRGGAATLFYPLWHLEVEDLLVLKNNRGTDANRIRHMDYGVQINRALY 344 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 +R+ + TLFSP +V L+D + EFE Y+ YE+ + + + A+ L+ Sbjct: 345 QRLIEGGDITLFSPSDVPGLYDAFFADQDEFERLYQQYEQDPSIRK----KTVKAITLFS 400 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598 ++ TG +I D CN SP V V SNLC EI L + + E A Sbjct: 401 LLMQERASTGRIYIQHVDHCNTHSPFDPRVAPVKQSNLCLEIALPTKPLSHPDDENGEIA 460 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +C L + NL A Q D+L AVR LD+++D + I+ A+ S R +G+ Sbjct: 461 LCTLSAFNL---GAIEQL--DELEEMADLAVRALDSLLDYQDYPIKAARISTMNRRTLGI 515 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G++ F L Y+ + ++ E I ++ + ASV LA+E+GA +F + + Q Sbjct: 516 GVINFAYYLAKNGARYSDGSGNNLTHKTFEAIQYYLLKASVGLAKEKGACPAFNETTYSQ 575 Query: 719 GVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G+ PID+ L + DE L W+ L+ + G+RNS A+ P+ T + I Sbjct: 576 GILPIDTYKKALDAICDE-----PLHLDWEGLRAEILEHGLRNSTLSALMPSETSSQISN 630 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P + VK + G V + IE + Sbjct: 631 ATNGIEPPRGLVSVKGSKDGVMKQV----------------------------VPGIETL 662 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDF-IYRQ-- 891 D + + + L+ QK++DQA S N D PS G K+ + Q Sbjct: 663 RDQYELLWTIPNNTGYLQLV---GLMQKFVDQAISANTNYD-PSRYEGNKMPMKVLLQDL 718 Query: 892 --AWLMGLKTTYYLRSRSATS 910 A+ GLKT YY +R S Sbjct: 719 MLAYKYGLKTLYYQNTRDGQS 739 >gi|183599609|ref|ZP_02961102.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827] gi|188021859|gb|EDU59899.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827] Length = 763 Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 190/676 (28%), Positives = 296/676 (43%), Gaps = 53/676 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ ++ A GL +VS V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGHKERIDLDKIHKVITWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ E LY ++ R +E G Sbjct: 65 AAADLITGDTPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-KHVTRLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSQEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSHYPKETRLDYIRRFYDAASTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKN 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551 TLFSP +V L+D + EFE Y YE+ RK + AV L+ M+ Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYLAYEQD------DSIRKSSVKAVDLFSLMMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG +I D CN SP V V SNLC EI L N E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL A + D+L AVR LD ++D + I AKK R +G+G++ Sbjct: 465 SAFNLGA-----IENLDELEELAVLAVRALDALLDYQDYPIIAAKKGAMGRRTLGIGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ P Sbjct: 520 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILP 579 Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ID+ L ++ DE W+ L+K ++ G+RNS A+ P+ T + I + Sbjct: 580 IDTYKKELDKLTDE-----PLHYDWETLRKDIQQYGLRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSG 797 I+P + +K++ G Sbjct: 635 IEPPRGYISIKASKDG 650 >gi|326536453|ref|YP_004300884.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage 65] gi|312262799|gb|ADQ53055.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage 65] Length = 751 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 210/807 (26%), Positives = 351/807 (43%), Gaps = 99/807 (12%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ G F+ ++ +V+ AC GL+ +L + +G+S D++ +I ++ Sbjct: 5 VLKSSGITEEFSFDKIFKVVDFACQGLE-ADPHTILEAAKPAIMEGMSTKDIQKLVIKAA 63 Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 LI EP+Y V R + LR++V Y ++ +I + VK Sbjct: 64 VDLISVDEPDYQYVAGRLTMYALRKKV-------------------YNQFDPPHIYDHVK 104 Query: 266 ARLLHESMMDFDLVYLANDLKYE---------RDFAFEYLGLQILYDRYFL--HINGSRI 314 L+ D DL+Y ++ +YE RD F Y G ++Y + NG+ Sbjct: 105 G-LVASGHYDRDLIYKYSEKEYEILQGIIDHTRDMNFTYAGAMQYKEKYLVKDRSNGTIY 163 Query: 315 EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 E PQ +M AM L +E +++ + ++FYN S+F TP L SG R P Q SS Sbjct: 164 ETPQFAYMLQAMCLHQEEDVSKRLEYVIDFYNAASNFEISLPTPIL--SGVRTPTRQFSS 221 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C D L I + G+G + +R G+ I GVIPF K Sbjct: 222 CVKIESGDSLESIGETSKAIMKYISRRAGIGINGGAIRAEGSRIRSGEVSHTGVIPFWKH 281 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R G+ WH++VE+ L L+ N G + R +++ I F+ Sbjct: 282 FTTGVKSCSQGGVRGGSGNINYPMWHLEVEKLLVLKNNKGTEETRIRNIDYTVHINKFFI 341 Query: 491 KRVTQNAGWTLFSPDEVSDL--HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 +R+ ++ TLFSPD + L D Y + E Y ++ + + ++I A L+ Sbjct: 342 ERLKEDGYITLFSPDIDNGLLYKDFYDSDSSKFIERY-KKLEMNHVIRKKRIKAADLFTT 400 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT------LNSSSEETAVCNL 602 MLT TG + F D N ++P ++ + +NLC EI + EE A+C L Sbjct: 401 MLTERAGTGRIYAMFVDNVNKQTP--YIEPIKMTNLCVEIKSSRHNPMADKDEEIALCTL 458 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +INL DY +L+ R VR LDN++D + ++ A+K+ R++G+G++ Sbjct: 459 SAINLGK--IKTTSDYIRLS---RIIVRALDNLLDYQDYPVKAAEKAKK-RRSLGIGVVN 512 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y SPEA+ + E E I F I AS+ELA+ERGA + W +G+ P Sbjct: 513 LAYFLAKNFVNYNSPEALALVHEHFEAIQFSHIRASMELAKERGASEWHDRTKWSKGLLP 572 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID +L + W+ L+ + G+RN A P+ + + + + + Sbjct: 573 ID----WYNKNVDLLTPNVLKQDWEWLRTEILKYGLRNDTLTAQMPSESSSQLLNATNGV 628 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P L K++ G F N+L + +++ + D+ + Sbjct: 629 EPVRALLSTKASKDGAF--------NQL--------------------VPDVDILSDEYQ 660 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP--SGKK------LDFIYRQAW 893 + A E + + QK+ DQ S+N Y+ + SGK D ++ Q + Sbjct: 661 TLWAMVRENGMTGYLSICAVIQKFFDQGISVNTSYIPQSYKSGKVPVSVMLKDLVFAQKY 720 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVD 920 GLK YY +R + +K D Sbjct: 721 --GLKAMYYHNTRDGNESDIEMVKEAD 745 >gi|227833935|ref|YP_002835642.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] gi|227454951|gb|ACP33704.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] Length = 720 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 194/671 (28%), Positives = 307/671 (45%), Gaps = 69/671 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DFD + Y F F+ +LG Y Y L R + + F RV+M Sbjct: 86 DFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 K A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 145 GDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKNNDDMYLFSP---YDVER 321 Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YGK F +I+ E+YE + I+ +KI+A ++ + + FE+G+P+I F+D N Sbjct: 322 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 380 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS SE CNLGS+N+ A D Sbjct: 381 NPVK-TGRINMSNLCSEILQVNSPSELNEDLTYKTLGSDISCNLGSLNIAA-----TMDS 434 Query: 619 DKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A T+ TA+R L V D +++ +K N AIGLG M L HI Y S Sbjct: 435 PDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGSE 494 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PIDSIGLLAE 731 E ++ + I + A+ AS +LA+ERG Y S F S + G F P D + Sbjct: 495 EGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGEFFDRYDPADFAPRTEK 554 Query: 732 VRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 V++ A ++ S W +LK V G+ N N A+ PT +I+ I + SI P Sbjct: 555 VKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPIASK 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + ++ E I + Y + N D+L+ + Sbjct: 615 IEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFK-DS 644 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 645 YEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQ 704 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 705 -MALEGTEVEG 714 >gi|262184938|ref|ZP_06044359.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium aurimucosum ATCC 700975] Length = 716 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 192/675 (28%), Positives = 306/675 (45%), Gaps = 77/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DFD + Y F F+ +LG Y Y L R + + F RV+M Sbjct: 82 DFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 140 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 K A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 141 GDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 200 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 201 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 260 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ Sbjct: 261 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKNNDDMYLFSP---YDVER 317 Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YGK F +I+ E+YE + I+ +KI+A ++ + + FE+G+P+I F+D N Sbjct: 318 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 376 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS SE CNLGS+N+ A D Sbjct: 377 NPVK-TGRINMSNLCSEILQVNSPSELNEDLTYKTLGSDISCNLGSLNIAA-----TMDS 430 Query: 619 DKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A T+ TA+R L V D +++ +K N AIGLG M L HI Y S Sbjct: 431 PDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGSE 490 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PIDSIGLLAE 731 E ++ + I + A+ AS +LA+ERG Y S F S + G F P D + Sbjct: 491 EGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGEFFDRYDPADFAPRTEK 550 Query: 732 VRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 V++ A ++ S W +LK V G+ N N A+ PT +I+ I + SI P Sbjct: 551 VKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPIASK 610 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844 + ++ +G IG + + +D + Sbjct: 611 IEIRK----------------------------------EGKIGRVYYPAPHMDNDNLEY 636 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 637 FKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYI 696 Query: 904 RSRSATSVEKSTLKG 918 R R ++E + ++G Sbjct: 697 RLRQ-MALEGTEVEG 710 >gi|305680926|ref|ZP_07403733.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium matruchotii ATCC 14266] gi|305659131|gb|EFM48631.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium matruchotii ATCC 14266] Length = 719 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 194/675 (28%), Positives = 312/675 (46%), Gaps = 78/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DFD + Y F F +LG Y Y L +G+R +E + VA+GLA Sbjct: 86 DFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLERFEDRVCMVALGLADG 145 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 +TE + V+ + + F +TPT N G + + SCFL + D++ I ++ Sbjct: 146 DTELARHLVD---EIMTGRFQPATPTFLNMGKAQRGEPVSCFLLRIEDNMESIGRSINSA 202 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA Sbjct: 203 LQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 262 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + N+ LFSP D+ Sbjct: 263 YLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARNNSDMYLFSP---YDV 319 Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YGK F +I+ E+Y+ + I+ +KI+A ++ + + FE+G+P+I ++D N Sbjct: 320 QRVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQFESGYPYIMYEDVVN 378 Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616 +P G V+ SNLC+EI +NS S E CNLGS+N+ Sbjct: 379 RANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCNLGSLNIAM-----AM 431 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D A T+ TA+R L V + + H++ +K N AIGLG M L I Y Sbjct: 432 DSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHGYLGRERIHYG 491 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLL 729 S EA++ + + + + AS +LAQERG ++ F+ S + G + P D Sbjct: 492 SEEALDFTNAYFAAVLYQCLRASNKLAQERGQSFGGFEDSEYASGAYFDRFSPADFAPKT 551 Query: 730 AEVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 A+V+ D ++ + WD LK V T G+ N N A+ PT +I+ I + SI P Sbjct: 552 AKVQELFDASSITVPTAAEWDALKSDVMTHGLYNRNLQAVPPTGSISYINNSTSSIHPIA 611 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--IERIPDDLKKI 844 + ++ E I + Y + N +E D Sbjct: 612 SRIEIRK------------------------EGKIGRVYYPAPHMDNTNLEYFQD----- 642 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 643 ---AYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKTLYYI 699 Query: 904 RSRSATSVEKSTLKG 918 R R ++E + ++G Sbjct: 700 RLRQ-VALEGTEVEG 713 >gi|311113721|ref|YP_003984943.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia dentocariosa ATCC 17931] gi|310945215|gb|ADP41509.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia dentocariosa ATCC 17931] Length = 726 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 196/697 (28%), Positives = 305/697 (43%), Gaps = 83/697 (11%) Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305 E Q PE F RY FD V Y F F +LG Y Y Sbjct: 82 ENQYYEPELFDRY---------------SFDFVKSLFKRAYAAKFRFPTFLGAFKFYTSY 126 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R + F RV M L K A E + + S F +TPT N+G R Sbjct: 127 ALKTFDGQR--YLERFEDRVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLNAGKR 184 Query: 365 H-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +L SCFL + D++ I ++ L+K GG+ T +R GA I +S G Sbjct: 185 QRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQSSG 244 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 245 VIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTLSLGV 304 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 IPD+ + +N LFSP +V ++ + + ++ E Y D I+ KI+A Sbjct: 305 VIPDITFELAKRNEDMYLFSPYDVERIYGVAFSDINVS-EKYYEMVDDSRIRK-TKINAR 362 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595 ++ + + FE+G+P++ F+D N +P + G + SNLC+EI S Sbjct: 363 EFFQTIAEVQFESGYPYVMFEDTVNRSNPIE--GKIIMSNLCSEILQVSKPSIYHDDLSY 420 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650 + CNLGS+N+ D D L T+ TA+R L V D + ++ ++ N Sbjct: 421 AEIGKDISCNLGSLNIAM-----TMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 475 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YS 709 A+GLG M L H+ Y S E ++ + +++HAI AS+E+A+ERG + Sbjct: 476 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 535 Query: 710 SFKGSLWDQGVFPIDSIGLLAE-----VRDELAMNRT-SRLPWDELKKRVKTIGMRNSNC 763 F+ S + G F I E VR+ A + +R W +L V GM N N Sbjct: 536 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 595 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I G + SI P + + K G F+ N+ Sbjct: 596 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 642 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881 N+E D ++EI +I++ + + +DQ SL L+ D + Sbjct: 643 ----------NLEYFQD--------SYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + ++ AW G+KT YY+R R ++E + ++G Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIRLRQ-MALEGTEVEG 720 >gi|126174280|ref|YP_001050429.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS155] gi|153000810|ref|YP_001366491.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS185] gi|304408852|ref|ZP_07390473.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS183] gi|307302855|ref|ZP_07582610.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica BA175] gi|125997485|gb|ABN61560.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella baltica OS155] gi|151365428|gb|ABS08428.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS185] gi|304352673|gb|EFM17070.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS183] gi|306913215|gb|EFN43637.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica BA175] Length = 762 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 205/782 (26%), Positives = 341/782 (43%), Gaps = 93/782 (11%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ ++ A GL++VS V ++ +DG+ + +I ++ LI E P+Y Sbjct: 20 EKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESPDYQF 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR + LR++ ++ P TH + +E G + + +L Sbjct: 80 LAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKLVELGKYDMHILQDYSREEL 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333 + + + RD F Y ++ L +Y + + E Q ++ VA L KET Sbjct: 129 DVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391 + K +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 WH++VE L L+ N G + R ++ + + +R+ + +LFSP +V L+ Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365 Query: 512 DLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 D + EFE Y YE+ + + + I AV L+ M+ TG +I D CN Sbjct: 366 DAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421 Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619 SP V + SNLC EI L + E A+C L ++NL + D + Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNLGS--IKELSDIE 479 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 LA AVR LDN++D + I+ A+ ++ R +G+G++ F + L + Y+ A Sbjct: 480 PLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 E+ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ RD + Sbjct: 537 NELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYK-----RDLDKIC 591 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 L W+ L+ +K G+RNS A+ P+ T + I + I+P + VKS+ G Sbjct: 592 AEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKSSKDG- 650 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +LKQ ++ D S + ++P + + Sbjct: 651 ----------QLKQ-------VVPDFDTLKDSYELLWKMPSNDGYLQLVGI--------- 684 Query: 859 SASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRSA 908 QK++DQA S N D PS G+K+ D + A+ +G+KT YY +R Sbjct: 685 ----MQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDG 737 Query: 909 TS 910 S Sbjct: 738 AS 739 >gi|225021559|ref|ZP_03710751.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii ATCC 33806] gi|224945550|gb|EEG26759.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii ATCC 33806] Length = 719 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 193/675 (28%), Positives = 313/675 (46%), Gaps = 78/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DFD + Y F F +LG Y Y L +G+R +E + VA+GLA Sbjct: 86 DFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLERFEDRVCMVALGLADG 145 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 +TE + V+ + + F +TPT N G + + SCFL + D++ I ++ Sbjct: 146 DTELARHLVD---EIMTGRFQPATPTFLNMGKAQRGEPVSCFLLRIEDNMESIGRSINSA 202 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA Sbjct: 203 LQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 262 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + N+ LFSP D+ Sbjct: 263 YLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARNNSDMYLFSP---YDV 319 Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YGK F +I+ E+Y+ + I+ +KI+A ++ + + FE+G+P+I F+D N Sbjct: 320 QRVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQFESGYPYIMFEDVVN 378 Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616 +P G V+ SNLC+EI +NS S E CNLGS+N+ Sbjct: 379 RANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCNLGSLNIAM-----AM 431 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D A T+ TA+R L V + + H++ +K N AIGLG M L I Y Sbjct: 432 DSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHGYLGRERIHYG 491 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLL 729 S EA++ + + + + AS +LA+ERG ++ F+ S + G + P D + Sbjct: 492 SEEALDFTNAYFAAVLYQCLRASNKLARERGQSFGGFEDSEYASGAYFDRFSPADFVPKT 551 Query: 730 AEVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 A+V+ D ++ + W+ LK V T G+ N N A+ PT +I+ I + SI P Sbjct: 552 AKVQELFDASSITVPTAAEWEALKSDVMTHGLYNRNLQAVPPTGSISYINNSTSSIHPIA 611 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--IERIPDDLKKI 844 + ++ E I + Y + N +E D Sbjct: 612 SRIEIRK------------------------EGKIGRVYYPAPHMDNTNLEYFQD----- 642 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 643 ---AYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKTLYYI 699 Query: 904 RSRSATSVEKSTLKG 918 R R ++E + ++G Sbjct: 700 RLRQ-VALEGTEVEG 713 >gi|54309623|ref|YP_130643.1| ribonucleotide-diphosphate reductase subunit alpha [Photobacterium profundum SS9] gi|46914061|emb|CAG20841.1| putative ribonucleoside-diphosphate reductase,alpha subunit [Photobacterium profundum SS9] Length = 753 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 201/793 (25%), Positives = 343/793 (43%), Gaps = 83/793 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++ A GL +VS V +++ YDG+ +D+ +I Sbjct: 4 QLTVTKRDGRQETIELDKIHRVINWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ P H + + Sbjct: 64 KAAADLISEESPDYQYLAARLAIFNLRKKAYGQ-FEPPTLFAH----------VTNLVNK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L E + + + + RD F Y ++ L +Y + ++G E Q Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ +A L K ++ + + FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 DDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG R GA + WH +VE L L+ N G + R M+ + L R+ + Sbjct: 291 CCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +LFSP +V L+D + EFE Y YE+ A + I A+ L+ ++ Sbjct: 351 QNISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASIKK----ESIKAIELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLGS 604 TG +I D CN SP V + SNLC EI L N E E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A D ++LA VR LD ++D + + A++S R +G+G++ + Sbjct: 467 FNLGA--IETLDDLEELAD---LTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A I ++ E I ++ + ASV LA+E+GA +F + + +G+ PID Sbjct: 522 YYLAKHGVRYSDGSANNITHQTFEAIQYYLLKASVGLAKEQGACPAFHETTYSKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D++ W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKAIDDVCSEEL-HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + VK++ G ++ + K +D ++ ++ ++ +DG Sbjct: 638 PRGFVSVKASKDG---ILKQVVPEYSKYKDNYE--LLWNIGSNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLMGL 897 ++ QK+IDQ+ S N D + +GK + + + A+ +G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSKQANGKVPMTLLLKDLLNAYKLGV 726 Query: 898 KTTYYLRSRSATS 910 KT YY +R S Sbjct: 727 KTLYYHNTRDGAS 739 >gi|15616798|ref|NP_240010.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681553|ref|YP_002467938.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682109|ref|YP_002468493.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471236|ref|ZP_05635235.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134536|sp|P57276|RIR1_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|25285846|pir||H84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) [imported] - Buchnera sp. (strain APS) gi|10038861|dbj|BAB12896.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621842|gb|ACL29998.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624396|gb|ACL30551.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085921|gb|ADP66003.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086492|gb|ADP66573.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087075|gb|ADP67155.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 761 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 206/787 (26%), Positives = 346/787 (43%), Gaps = 87/787 (11%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG N ++ ++ A GL DVS V + Y+ ++ ++ +I ++ LI Sbjct: 11 DGRKEKINLDKIHKVLNWASEGLDDVSVSQVELCSRIQFYNNITTINIHETIIKAAADLI 70 Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 ++ P+Y + AR + LR++ +P K H + + E +Y E +K Sbjct: 71 SQDTPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDHVKKMVDLE---KYDENLLKNYSY 125 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327 E + + + + + RD F Y ++ L +Y + +NG E Q ++ ++ Sbjct: 126 KE------FLQMNSFIDHWRDMNFSYAAVKQLEGKYLIQNRVNGKIYESAQFLYILISAC 179 Query: 328 LALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYG 382 L + K R FYN +S+F TP + SG R P Q SSC L D L Sbjct: 180 L-FSQYPKNVRMNYIHRFYNAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLNS 236 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I G+G + +R LG+ I G IPF K + +QGG Sbjct: 237 INATTSSIVKYVSQRAGIGVNAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCSQGG 296 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R GA + WH++VE L L+ N G + R ++ A I L +R+ TLF Sbjct: 297 VRGGAATIFYPIWHLEVESLLVLKNNRGIEENRVRHIDYAIQINKLMYQRMLSGDQITLF 356 Query: 503 SPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 SP +V DL+ + K+F+ Y YE+ + + + I A+ L+ M+ TG Sbjct: 357 SPSDVPDLYKAFFSDQKKFKKIYLQYEKNKNIRK----KTIKALDLFSLMMQERTSTGRI 412 Query: 560 WITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAH 610 ++ D CN+ S + + SNLC EITL + S E A+C L + NL Sbjct: 413 YVQNVDHCNLHSAFNPELSPIRQSNLCLEITLPTKSLNDVHDTDGEIALCTLSAFNLGKI 472 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + + F + S VR LD ++D + + AKKS + R++G+G++ F L Sbjct: 473 KSLDDFKELSILS-----VRALDEILDYQNYPVLAAKKSAISRRSLGIGVINFAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + ++ E + ++ + AS ELA+E+GA S F + + G PID+ Sbjct: 528 KVRYSDGSAHNLTHKTFEAMQYYLLEASCELAKEKGACSLFNHTNYYLGKLPIDT---YK 584 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + D++ N L W+ L+ ++K G+RNS A+ P+ T + I + I+P + Sbjct: 585 KYIDDIC-NEPLHLDWNLLRSKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFIS 643 Query: 791 VKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K + G VV + L+ LWD IP++ T + Sbjct: 644 IKVSKDGILRQVVPEYKKLRLQYELLWD-------------------IPNN------TGY 678 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY 902 ++ A QK+IDQ+ S+N + D + K+L + ++ +GLKT YY Sbjct: 679 -------LQLAGIMQKFIDQSISVNTHYDPARFLNNKIPMKQLLYDLLLSYKLGLKTLYY 731 Query: 903 LRSRSAT 909 +R + Sbjct: 732 QNTRDGS 738 >gi|311232338|gb|ADP85192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio vulgaris RCH1] Length = 754 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 171/624 (27%), Positives = 284/624 (45%), Gaps = 91/624 (14%) Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341 D A +L RY+ +G ++E + F RVA +A +ET+ E A E Sbjct: 14 DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 73 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 74 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 133 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G I FL++ N + QGG R+GA L H D+ + Sbjct: 134 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 193 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ ++ N + + + FM+ V + + L +P + L +E Sbjct: 194 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLEKGRLKARE---V 246 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +E R+A +E+G P I F D N +P G + S Sbjct: 247 FELLVRKA------------------------WESGDPGIVFIDRINRDNPTPDQGEIES 282 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631 +N C E L CNLGS+NL A F A+ D+ L I VR Sbjct: 283 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 338 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID + +E+ + H +R IGLG+MG+ L L I Y SPEA+ + + M F+ Sbjct: 339 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 398 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +AS +LA+ERG + ++ S F +G P+ Sbjct: 399 DEGRAASKQLAKERGPFPAYPAS-----TFAERDLG-----------------PY----- 431 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNEL 810 RN+ IAPT T++ + G S I+P + + + M G+ V VN Sbjct: 432 -------RNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 484 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + ++ + GSI ++ +P+ ++++ TA +I+P+W ++ + Q++ D A Sbjct: 485 RAEGCHSPRLMETVA-SKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 543 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWL 894 S + L P+ ++ I W+ Sbjct: 544 VSKTVNL--PNNATIEDIRNIYWM 565 >gi|46581780|ref|YP_012588.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio vulgaris str. Hildenborough] gi|46451203|gb|AAS97848.1| ribonucleoside-diphosphate reductase [Desulfovibrio vulgaris str. Hildenborough] Length = 777 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 171/624 (27%), Positives = 284/624 (45%), Gaps = 91/624 (14%) Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341 D A +L RY+ +G ++E + F RVA +A +ET+ E A E Sbjct: 37 DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 96 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 97 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 156 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G I FL++ N + QGG R+GA L H D+ + Sbjct: 157 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 216 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ ++ N + + + FM+ V + + L +P + L +E Sbjct: 217 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLEKGRLKARE---V 269 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +E R+A +E+G P I F D N +P G + S Sbjct: 270 FELLVRKA------------------------WESGDPGIVFIDRINRDNPTPDQGEIES 305 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631 +N C E L CNLGS+NL A F A+ D+ L I VR Sbjct: 306 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 361 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID + +E+ + H +R IGLG+MG+ L L I Y SPEA+ + + M F+ Sbjct: 362 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 421 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +AS +LA+ERG + ++ S F +G P+ Sbjct: 422 DEGRAASKQLAKERGPFPAYPAS-----TFAERDLG-----------------PY----- 454 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNEL 810 RN+ IAPT T++ + G S I+P + + + M G+ V VN Sbjct: 455 -------RNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 507 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + ++ + GSI ++ +P+ ++++ TA +I+P+W ++ + Q++ D A Sbjct: 508 RAEGCHSPRLMETVA-SKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 566 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWL 894 S + L P+ ++ I W+ Sbjct: 567 VSKTVNL--PNNATIEDIRNIYWM 588 >gi|217973231|ref|YP_002357982.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS223] gi|217498366|gb|ACK46559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS223] Length = 762 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 207/784 (26%), Positives = 341/784 (43%), Gaps = 97/784 (12%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218 +++ ++ A GL++VS V ++ +DG+ + +I ++ LI E P+Y Sbjct: 20 EKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESPDYQF 79 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 + AR + LR++ ++ P TH + +E G + + +L Sbjct: 80 LAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKLVELGKYDMHILQDYSREEL 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333 + + + RD F Y ++ L +Y + + E Q ++ VA L KET Sbjct: 129 DVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391 + K +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 WH++VE L L+ N G + R ++ + + +R+ + +LFSP +V L+ Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365 Query: 512 DLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDP 566 D + EFE Y YE+ + RK I AV L+ M+ TG +I D Sbjct: 366 DAFFEDQNEFERLYVQYEQDS------CIRKKTIKAVELFSLMMQERASTGRIYIQNVDH 419 Query: 567 CNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFD 617 CN SP V + SNLC EI L + E A+C L ++NL + D Sbjct: 420 CNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNLGS--IKELSD 477 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + LA AVR LDN++D + I+ A+ ++ R +G+G++ F + L + Y+ Sbjct: 478 IEPLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDG 534 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-EL 736 A E+ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ RD + Sbjct: 535 SANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYK-----RDLDK 589 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 L W+ L+ +K G+RNS A+ P+ T + I + I+P + VKS+ Sbjct: 590 ICAEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKSSKD 649 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G +LKQ ++ D S + ++P + + Sbjct: 650 G-----------QLKQ-------VVPDFDTLKDSYELLWKMPSNDGYLQLVGI------- 684 Query: 857 IESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSR 906 QK++DQA S N D PS G+K+ D + A+ +G+KT YY +R Sbjct: 685 ------MQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTR 735 Query: 907 SATS 910 S Sbjct: 736 DGAS 739 >gi|326803226|ref|YP_004321044.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650452|gb|AEA00635.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 732 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 191/699 (27%), Positives = 318/699 (45%), Gaps = 88/699 (12%) Query: 288 ERDFAFEYL-GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 ++DFAF L G Y Y L + + +A L L +++ ++L Sbjct: 87 DQDFAFPNLIGAMKFYSAYALKTDDKAYYLETYEDRVIANALFLANGDQDLAKDLAADIL 146 Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S+ F +TPT N+ R + SC+L V D++ I ++ + L+K GG+ T Sbjct: 147 SN-RFQPATPTFLNAAKKRRGEYISCYLLRVEDNMESIARSIATSLQLSKRGGGVALCLT 205 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R A I G ++ GV+P +K+ D+ NQ G+R+GA YL H D+ +FLD Sbjct: 206 NLRETTAPIKGMANQASGVVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPDILKFLDT 265 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAY 522 ++ D++ R ++ IPD+ + +N LFSP D+ +YGK + I Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIKKVYGKAMSDISITE 322 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + E A+ K F ISA L++ + + FE+G+P++ F+D N R+P + G + S Sbjct: 323 KYDELLANPAIHKDF--ISARKLFQVIAELHFESGYPYLMFEDTVNSRNPHKKKGRIVMS 380 Query: 583 NLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EIT S+ E CNLGS+N +A + D+ L S A++ Sbjct: 381 NLCSEITQVSTPSSFNEDLSFRTIGEDICCNLGSLN-IAKAMDQAPDFGHLVS---HAIQ 436 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD + + + KK N + A+GLG M L HI Y S EAV+ D Sbjct: 437 ALDRISRKSDLESAPSIKKGNQANHAVGLGAMNLHGFLATNHIYYDSEEAVDFTDMFFYA 496 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRLP 745 +++HA +S L ++ G ++ F S + G + + + + E L + +LP Sbjct: 497 LAYHAFKSSHALVKQHGPFAGFAESEYADGSYFMKYTESRVQPKTERVRQLLKDYGLQLP 556 Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W L K ++ G+ N++ +A+APT +I+ + + S+ P Sbjct: 557 SQEDWQALAKAIQEDGIANAHLLAVAPTGSISYLSSCTPSLQP----------------- 599 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFEIDPMW 855 +V+ ++ R +G +G + +P D+ A+E+ P Sbjct: 600 ----VVSPVETR-------------KEGKLGRV-YVPAYQIDNDNYAYYQRGAYEVGPQA 641 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 +I+ + QK +DQA SL L++ E + + L+ Y A+ G T YY+R R Sbjct: 642 IIDIVAAAQKHVDQAISLTLFMSSEATTRDLNRAYIYAYSKGCSTIYYVRVRQDVLAGSE 701 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L+ D L+A P T P+ SSC ++ECE C Sbjct: 702 HLES-DELLSADP-TSPDR--------SSCNGNSECESC 730 >gi|99080360|ref|YP_612514.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp. TM1040] gi|99036640|gb|ABF63252.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Ruegeria sp. TM1040] Length = 710 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 187/667 (28%), Positives = 305/667 (45%), Gaps = 80/667 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 D Y + F F +LG Y Y L +G R + + RV M EK A++ Sbjct: 86 DAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR--YLERYEDRVVMNALTLARGDEKLAMK 143 Query: 342 FYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + + F +TPT N+G + + SCFL + D++ I + L+K GG+ Sbjct: 144 LMSEIIDGRFQPATPTFLNAGKKARGEFVSCFLLRLEDNMESIGRGINSALQLSKRGGGV 203 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 T +R GA I G +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 204 ALMLTNIREHGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIL 263 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-E 519 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG+ F E Sbjct: 264 RFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---HDVEKVYGQAFSE 320 Query: 520 IAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I+ E Y D +I+ +KI+A A ++ + + FE+G+P+I F+D N +P G Sbjct: 321 ISVTEKYHEMVDNPQIRK-KKINARAFFQTIAEIQFESGYPYIMFEDTVNAANPI--AGR 377 Query: 579 VHSSNLCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI +N S E+ CNLGS+N+ D LA T+ Sbjct: 378 IAMSNLCSEILQVNEPSKFNDDLSYEQMGTDISCNLGSMNIA-----RAMDGGDLAGTVG 432 Query: 627 TAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TA+R L+ V +++ ++ +K N AIGLG M L I Y S E V+ + Sbjct: 433 TAIRALNAVSEMSSIDSVPSIRKGNEEGHAIGLGQMNLHGYLARERIHYGSAEGVDFTNI 492 Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIGLLAEVRDEL 736 + +HAISAS LA+E+ + + F+ S + G F + + E+ + Sbjct: 493 YFCTVLYHAISASNALAKEKKSKFKGFEDSAYADGSFFEKYVEKDWLPETDRVKELFETA 552 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + +R W+ L+ +V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 553 GVEIPTRKDWEALRDKVMKHGLYNRNLQAVPPTGSISYINYATSSIHPITAKIEIRK--- 609 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852 +G IG + + +D + + A+EI Sbjct: 610 -------------------------------EGKIGRVYYPAPYMTNDNLEYYRDAYEIG 638 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P +I++ + + +DQ SL L+ E S + ++ AW G+KT YY+R R ++ Sbjct: 639 PEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIRLRQ-QAL 697 Query: 912 EKSTLKG 918 E + ++G Sbjct: 698 EGTEVEG 704 >gi|325291516|ref|YP_004277380.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium sp. H13-3] gi|325059369|gb|ADY63060.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium sp. H13-3] Length = 729 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 194/670 (28%), Positives = 315/670 (47%), Gaps = 70/670 (10%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 97 FNFVRDLYDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGD 156 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 157 ---EQLARDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSAL 213 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA Y Sbjct: 214 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 273 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 274 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVY 333 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E ++ E Y+ I+ +KI A ++ + + FE+G+P+I F+D N + Sbjct: 334 GVPFTEISVS-EKYQEMVADSRIRK-KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 391 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + E CNLGS+N+ + A + D+ Sbjct: 392 PI--AGRISMSNLCSEILQVSEASEFNDDLSYSHMGKDISCNLGSLNIAS--AMDSADFG 447 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K TI T++R L V D++ ++ +K N AIGLG M L I Y S E Sbjct: 448 K---TIETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEE 504 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGLLA--EV 732 ++ + +++HAI AS LA ERG ++ F+ S + G + D L A +V Sbjct: 505 GIDFTNIYFYTVTYHAIRASNRLATERGQSFKGFENSKYASGDYFDKYTDREWLPATEKV 564 Query: 733 RD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 RD + ++ ++ W LK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 565 RDLFEKAGISIPTQEDWKALKQAVMETGLYNQNLQAVPPTGSISYINHSTSSIHP----- 619 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +V++++ R E I + Y + N D+L + + A+ Sbjct: 620 ----------------IVSKIEIR---KEGKIGRVYYPASYLSN-----DNL-EYYQDAY 654 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 655 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLRQ- 713 Query: 909 TSVEKSTLKG 918 ++E + ++G Sbjct: 714 MALEGTQVQG 723 >gi|154249118|ref|YP_001409943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Fervidobacterium nodosum Rt17-B1] gi|154153054|gb|ABS60286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Fervidobacterium nodosum Rt17-B1] Length = 841 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 197/702 (28%), Positives = 324/702 (46%), Gaps = 117/702 (16%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP-QAFFMRVAMGLALKETE---- 334 L + +++ +D +IL +RYFL +G +E RVA +A E Sbjct: 5 LTSVIEHWKDVELSKNAYKILSERYFLKTPSGEFLEKSWDDICRRVARVIATAELVNNPE 64 Query: 335 -KEKRAVE-----------FYNLLSSFHFMCSTPTLFNSG--TRHP-------------- 366 KEK E F++ L S F+ ++PTLFN+G RH Sbjct: 65 LKEKSPFEQLDEVKFWESTFFDFLKSRIFIPNSPTLFNAGMGVRHELLWKSIDDMTLEDY 124 Query: 367 -----------QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 LS+CF+ V D + GIF A++E A++ K GG+G++++ +R G+ + Sbjct: 125 WEIYNSRNHLHMLSACFVVPVEDSIEGIFEAVKEYALITKAGGGIGSNFSRLRPKGSFVA 184 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 GT+G++ G + F+ V N V QG +R+GA+ L H D+EEF+ ++ G+D + Sbjct: 185 GTHGQASGPVSFMHVFNSAVGVVEQGYRRRGALMGILNIDHPDIEEFITAKE--GNDGEK 242 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 +K + G T+ + +L LY ++ EI ++ + + Sbjct: 243 V-------------LKFFNISVGITM----DRQELLKLYMEDGEIELKHPKCNGSK---- 281 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 ++ L K+ ++TG P + F N + S+N C EI L Sbjct: 282 ---RVKVRELINKIAKNAWKTGDPGLAFLSEMNKYYAMYPEMTIESTNPCGEIGLAPYE- 337 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNLGSI++ + N +F ++ A R AVR LD+VID+N +EK +K+ R Sbjct: 338 ---ACNLGSIDVAKFYMNGEFYWEAFAQATRLAVRFLDDVIDVNVFPLEKIRKAVTDSRR 394 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MGF L+++ IPY S E + A + +++ H S +LAQ +G++ F+ S Sbjct: 395 IGLGIMGFADLLYMMDIPYNSHEGRQFAADMTAYMAIHGHDESNKLAQLKGSFPLFEKSR 454 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD-ELKKRVK--TIGMRNSNCMAIAPTATI 772 + + DE A +D ELK+ K G RN + IAPT +I Sbjct: 455 YYR--------------EDEFAPFAMGMSKYDNELKEVFKESKKGKRNVAVLTIAPTGSI 500 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGS 830 +NI S ++P++ YV+ D T F VN++ + L E + + D GS Sbjct: 501 SNIADTSSGLEPNFLLAYVRYMNKHDGTKEALFYVNKVLESKLNKEILERVKDKLVERGS 560 Query: 831 IGNIERIPDDLKKIHATAFEIDPM--WLIESASRR------QKWIDQAQS------LNLY 876 + +I IP+++K++ TA +I PM L++ A +R K I+ S LN+Y Sbjct: 561 LQDIPEIPEEIKRVFVTAMDISPMDHLLMQDAFQRYVDNNISKTINMPNSATEEDVLNIY 620 Query: 877 LDEPSGKKLDF----IYRQAWLMG--LKTTYYLRSRSATSVE 912 L+ KL+ IYR L L + L+++ A+ V+ Sbjct: 621 LE---AMKLNIRGLTIYRDGSLQTQVLTSAKNLKTKDASKVQ 659 >gi|120601069|ref|YP_965469.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio vulgaris DP4] gi|120561298|gb|ABM27042.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio vulgaris DP4] Length = 781 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 171/624 (27%), Positives = 284/624 (45%), Gaps = 91/624 (14%) Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341 D A +L RY+ +G ++E + F RVA +A +ET+ E A E Sbjct: 41 DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 100 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 101 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 160 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G I FL++ N + QGG R+GA L H D+ + Sbjct: 161 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 220 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ ++ N + + + FM+ V + + L +P + L +E Sbjct: 221 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLEKGRLKARE---V 273 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +E R+A +E+G P I F D N +P G + S Sbjct: 274 FELLVRKA------------------------WESGDPGIVFIDRINRDNPTPDQGEIES 309 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631 +N C E L CNLGS+NL A F A+ D+ L I VR Sbjct: 310 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 365 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID + +E+ + H +R IGLG+MG+ L L I Y SPEA+ + + M F+ Sbjct: 366 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 425 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +AS +LA+ERG + ++ S F +G P+ Sbjct: 426 DEGRAASKQLAKERGPFPAYPAS-----TFAERDLG-----------------PY----- 458 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNEL 810 RN+ IAPT T++ + G S I+P + + + M G+ V VN Sbjct: 459 -------RNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 511 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + ++ + GSI ++ +P+ ++++ TA +I+P+W ++ + Q++ D A Sbjct: 512 RAEGCHSPRLMETVA-SKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 570 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWL 894 S + L P+ ++ I W+ Sbjct: 571 VSKTVNL--PNSATIEDIRNIYWM 592 >gi|303245840|ref|ZP_07332122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio fructosovorans JJ] gi|302492623|gb|EFL52491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio fructosovorans JJ] Length = 743 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 175/618 (28%), Positives = 290/618 (46%), Gaps = 83/618 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHF 351 +L RY +G E ++ F RVA +A E +K A FY+L++ F Sbjct: 22 VLAKRYLQKGPDGEPTEDARSLFWRVATAIAAMEAHYDKSPFTPEALARAFYDLMTGMRF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QL++CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 82 LPNSPTLMNAGAPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKK 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + T G + G + F+++ N V QGG R+GA L H D+ EF+ ++ + Sbjct: 142 SRVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFITCKERENE 201 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + N + + + FM+ V + + L P + Sbjct: 202 ----LQNFNISVALTERFMQAVEKGEDYDLVDPRDK------------------------ 233 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V +A ++ ++ +E+G P I F D N +P +G + S+N C E L Sbjct: 234 ---RVVGSQNAAEVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLL 290 Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL F A + D+ L T+ AVR LDNVID + + +++ + Sbjct: 291 PYE----ACNLGSINLSVFFDPEAEDGIDWKGLTETVHLAVRFLDNVIDASRYPLDQITE 346 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +R IGLG+MGF L+LL IPY S EA+ +A++ ME I A SAS LA ERG + Sbjct: 347 MVRANRKIGLGIMGFADLLYLLRIPYDSTEALSLAEKVMETIQGEARSASKTLAAERGPF 406 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 ++ S VF ++G P+ RN+ IAP Sbjct: 407 PAYAES-----VFGKRNLG-----------------PY------------RNATTTTIAP 432 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827 T T++ I G S I+P + + + M G+ V N V +++ + E+++ ++ Sbjct: 433 TGTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANPHFVAAMQEAGAYSESLMEEVT-R 491 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LD 886 GSI +I +P++L+ + TA +I+P+W ++ + QK+ D A S + L + K+ + Sbjct: 492 KGSIAHIGMLPEELRDVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNKATKEDIR 551 Query: 887 FIYRQAWLMGLKTTYYLR 904 IY A+ +G K R Sbjct: 552 EIYWLAYELGCKGVTVYR 569 >gi|114047557|ref|YP_738107.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. MR-7] gi|113888999|gb|ABI43050.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. MR-7] Length = 762 Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 205/791 (25%), Positives = 346/791 (43%), Gaps = 93/791 (11%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219 ++ ++ A GL++VS V T+ +DG+ + +I S+ LI E P+Y + Sbjct: 21 KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + LR++ +P K H + +E G + + +L Sbjct: 81 AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337 + + + RD F Y ++ L +Y + + E Q ++ VA L KE Sbjct: 130 IMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188 Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392 R +FY+ +S+F TP + +G R P Q SSC L D L I Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 G+G + +R LG+ I G G +PF K + +QGG R GA + Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH++VE L L+ N G + R ++ + L +R+ + +LFSP +V L+D Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENISLFSPSDVPGLYD 366 Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + EFE Y YE+ + + + + AV L+ M+ TG +I D CN Sbjct: 367 AFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERASTGRIYIQNVDHCNT 422 Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 SP V + SNLC EI L + + E A+C L ++NL A N + + Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKNLAELEP 480 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 LA AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Y+ A Sbjct: 481 LAD---LAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739 + ++ E I F+ + AS+ LA+E+ A F + + QG+ PID+ RD + + Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEQDACPLFNETTYAQGILPIDTYK-----RDLDKICS 592 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 L W+ L++ +K G+RNS A+ P+ T + I + I+P + VK++ G Sbjct: 593 EPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652 Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 VV F +ELK ++ ++ + ++G ++ Sbjct: 653 KQVVPDF--DELK----YNYELLWQMPSNEG--------------------------YLQ 680 Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909 QK++DQA S N D G+K+ D + A+ +G+KT YY +R Sbjct: 681 LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738 Query: 910 SVEKSTLKGVD 920 S + + ++ Sbjct: 739 SDQHDDITNIE 749 >gi|159184147|ref|NP_353104.2| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium tumefaciens str. C58] gi|159139482|gb|AAK85889.2| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium tumefaciens str. C58] Length = 693 Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 195/670 (29%), Positives = 314/670 (46%), Gaps = 70/670 (10%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 61 FNFVRDLYDEAYSRKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGD 120 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 121 ---EQLARDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSAL 177 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA Y Sbjct: 178 QLSKRGGGVALSLTNIREFGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 237 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 238 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVY 297 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + + +E AD K +KI A ++ + + FE+G+P+I F+D N + Sbjct: 298 GVPLTEISVTEKYHEMVADSRIRK--KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 355 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + E CNLGS+N+ + A + D+ Sbjct: 356 PV--AGRISMSNLCSEILQVSEASEFNADLSYSHMGKDISCNLGSLNIAS--AMDSADFG 411 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K TI T++R L V D++ ++ +K N AIGLG M L I Y S E Sbjct: 412 K---TIETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEE 468 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGLLA--EV 732 ++ + +++HAI AS LA ERG ++ F+ S + G + D L A +V Sbjct: 469 GIDFTNIYFYTVTYHAIRASNRLAVERGQSFKGFENSKYASGDYFDKYTDREWLPATEKV 528 Query: 733 RD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 RD + + ++ W LK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 529 RDLFEKAGIAIPTQEDWTALKQDVMASGLYNQNLQAVPPTGSISYINHSTSSIHP----- 583 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +V++++ R E I + Y + N D+L + + A+ Sbjct: 584 ----------------IVSKIEIR---KEGKIGRVYYPASYLSN-----DNL-EYYQDAY 618 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 619 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRRGIKTIYYIRLRQ- 677 Query: 909 TSVEKSTLKG 918 ++E + ++G Sbjct: 678 MALEGTQVQG 687 >gi|15839968|ref|NP_335005.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Mycobacterium tuberculosis CDC1551] gi|13880109|gb|AAK44819.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Mycobacterium tuberculosis CDC1551] Length = 735 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 180/681 (26%), Positives = 289/681 (42%), Gaps = 96/681 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 107 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 166 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 167 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 226 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 227 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 286 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 287 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 343 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N LH L K+ ++ Sbjct: 344 SVGVTDAFLRAVERNG------------LHRLVNPRTG---------------KIVARMP 376 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 377 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 432 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IGLG+M Sbjct: 433 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 492 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 493 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 547 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ RN+ ++APT TI+ I G + Sbjct: 548 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 576 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + + ++ + VN + R + + +I+++ G + R+P ++ Sbjct: 577 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 635 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898 + TA EI P W + + Q+ ++ A S + L P+ +D IY AW +K Sbjct: 636 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 693 Query: 899 --TTYYLRSRSATSVEKSTLK 917 T Y SR + + K Sbjct: 694 GITVYRYGSREGQVLSSAAPK 714 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ +P K++ +R+G + FD ++I A+ +A +R + D Sbjct: 43 SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDM 85 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 TV + + I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 86 PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 142 >gi|300932706|ref|ZP_07147962.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium resistens DSM 45100] Length = 720 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 192/682 (28%), Positives = 312/682 (45%), Gaps = 80/682 (11%) Query: 264 VKARLLHESMMD-FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMP 317 V+ + +S++D +D ++ + K Y + F F+ +LG Y Y L NG R +E Sbjct: 73 VENKYYDKSVLDNYDFPFVKSLFKRAYAKKFRFQSFLGAYKYYTSYTLKTFNGKRYLERF 132 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376 + VA+GLA A + + + F +TPT N G + + SCFL + Sbjct: 133 EDRVCMVALGLA---AGNRALAEDLVDEIMDGRFQPATPTFLNIGKAQRGEPVSCFLLRI 189 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 190 EDNMESIGRSINSALQLSKRGGGVALLLSNIREAGAPIKHIENQSSGVIPVMKLLEDAFS 249 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N Sbjct: 250 YANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNN 309 Query: 497 AGWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP D+ +YGK F E+YE + I+ +KI+A ++ + + F Sbjct: 310 DDMYLFSP---YDVERIYGKAFADVPVSEHYEEMVEDPRIRK-QKINARQFFQTLAEIQF 365 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNL 602 E+G+P+I F+D N +P + G + SNLC+EI S+ + CNL Sbjct: 366 ESGYPYIMFEDTVNRANPIE--GRITHSNLCSEILQVSTPSVFNADLTYETIGDDISCNL 423 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661 GS+N+ D + + TI TA+R L V D + ++ ++ N AIGLG M Sbjct: 424 GSLNIA-----KAVDSENFSKTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQM 478 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 L HI Y S EA++ + + + AI AS +A+ERG ++++F+ S + G Sbjct: 479 NLHGFLGREHIHYGSEEALDFTNVYFAAVMYEAIKASNTIAKERGESFTNFENSDYASGE 538 Query: 721 F-----PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTAT 771 F P + + VR E+ N + ++P W LKK V+ G+ N N A+ PT + Sbjct: 539 FFDRYDPAEFQPITERVR-EIIENSSIQVPTADDWAALKKSVQEHGLYNRNLQAVPPTGS 597 Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + + K G ++ NE +L Y++ Sbjct: 598 ISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTNE-------------NLDYYE-- 642 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 A+EI +I++ + K++DQ SL L+ D + + ++ Sbjct: 643 ----------------DAYEIGFEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQ 686 Query: 890 RQAWLMGLKTTYYLRSRSATSV 911 AW G+KT YY+R R V Sbjct: 687 IYAWRKGIKTIYYIRLRQTALV 708 >gi|253797502|ref|YP_003030503.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 1435] gi|289552822|ref|ZP_06442032.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 605] gi|253319005|gb|ACT23608.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 1435] gi|289437454|gb|EFD19947.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 605] gi|328457287|gb|AEB02710.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 4207] Length = 706 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 178/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 78 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 137 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 138 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 197 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 198 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 257 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 258 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 314 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N L +P K+ ++ Sbjct: 315 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 347 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 348 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 403 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IGLG+M Sbjct: 404 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 463 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 464 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 518 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ RN+ ++APT TI+ I G + Sbjct: 519 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 547 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + + ++ + VN + R + + +I+++ G + R+P ++ Sbjct: 548 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 606 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898 + TA EI P W + + Q+ ++ A S + L P+ +D IY AW +K Sbjct: 607 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 664 Query: 899 --TTYYLRSR 906 T Y SR Sbjct: 665 GITVYRYGSR 674 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ +P K++ +R+G + FD ++I A+ +A +R + D Sbjct: 14 SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDM 56 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 TV + + I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 57 PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 113 >gi|86148041|ref|ZP_01066343.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] gi|85834174|gb|EAQ52330.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] Length = 693 Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 173/593 (29%), Positives = 278/593 (46%), Gaps = 66/593 (11%) Query: 351 FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT NSG + +L SCFL + D++ I A+ + L++ GG+ T +R Sbjct: 136 FQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLTNLRE 195 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G +S GV+P +K+ D+ NQ G R+GA YL H D+ +FLD ++ Sbjct: 196 QGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHPDIMQFLDTKREN 255 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD+ ++ QN LFSP +V ++ + E + E Y Sbjct: 256 ADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVYGVPFSEISVT-EKYHEMV 314 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 D I+ K+SA L++ + + FE+G+P+I F+D N +P Q G V+ SNLC+EI Sbjct: 315 DDPRIRK-GKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ--GRVNMSNLCSEIL 371 Query: 589 TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N +S CNLGSIN+ D +L+ T+ TA+R L+ V + Sbjct: 372 QVNEASNYDDDLNYSHIGRDISCNLGSINIA-----KALDGGRLSQTVDTAIRALNAVSE 426 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 ++ +++ +K N AIGLG M L I Y SPEA++ + +H ++ Sbjct: 427 MSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFTSSYFACVLYHCLA 486 Query: 697 ASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747 AS +LAQE + + F+ S + G F + + ++ + SRL W Sbjct: 487 ASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFSRLDIRIPTVSEWS 546 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFL 806 ELK+ V + G+ N AI PT +I+ I + SI P + + K G +L Sbjct: 547 ELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKEGKIGRVYFPAPYL 606 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 N N+E D AF I P +I+ + + Sbjct: 607 NN-----------------------SNLEYFRD--------AFSIGPKAIIDVYAAATEH 635 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +DQ SL L+ DE + + ++ AW +KT YY+R R ++E + ++G Sbjct: 636 VDQGLSLTLFFDDEVTTRDINKAQIYAWTKKIKTLYYIRMRQ-KALEGTQVEG 687 >gi|228861250|ref|YP_002854273.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled turtle iridovirus] gi|194307530|gb|ACF42260.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled turtle iridovirus] Length = 565 Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 170/568 (29%), Positives = 252/568 (44%), Gaps = 98/568 (17%) Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F S+P L + +G+ P SCFL VPD + G+ E L+ GG+ W VRG Sbjct: 56 FGYSSPILTSVTGSGLP--ISCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 A KS G IPFL + A QG R+G+ AY+ H D+ EF+ +R T Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 GD R+ +++ I D FM+ V + W L P + H Sbjct: 167 GDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKSGAVAH------------------ 208 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586 +SA LW ++L F TG P++ F D N + + G+ + SNLC Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCN 259 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638 EI L ++++ TAVC L S+NL ++D + + V +LDNVI Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLK 313 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 HT +A +S R+IGLG MG+ L IP+ S EAV + I A+ A+ Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRGIKSAAVRAT 372 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 LA+ERG G G+ Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN++ +A+AP A A + G S S++P YV +G VN +L +L+ L E Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRAGSHQAVNPYLKRDLESLGLDTE 450 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q QSLNL+ Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510 Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRS 905 + K L ++R AW G K YYLR+ Sbjct: 511 IGADKTNLSDVHRLAWKSGCKGLYYLRT 538 >gi|94499219|ref|ZP_01305757.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter sp. RED65] gi|94428851|gb|EAT13823.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter sp. RED65] Length = 756 Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 190/683 (27%), Positives = 303/683 (44%), Gaps = 59/683 (8%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 ++ L + DG + ++ ++ A GL++VS V DG+S SD+ Sbjct: 1 MSSTLHVTKRDGNRAPLDLDKIHKVLTWAAEGLENVSVSEVELRAQIQFSDGISTSDIHE 60 Query: 201 ALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI S+ LI E P+Y + AR + LR++ E LY E+ + Sbjct: 61 TLIKSAADLISENTPDYQYMAARLNIFHLRKKAYG----------QFEPPALY-EHVAKL 109 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 ++ R L E + + +++ RD F Y ++ L +Y + G E P Sbjct: 110 VDMDRYDRHLLEDYTKEEFDEMEGFIEHGRDLNFAYAAVKQLEGKYLAQNRVTGEVFESP 169 Query: 318 QAFFMRVAMGLAL-KETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371 Q F+ V +G L EK R FY+ +S+F TP + +G R P Q SSC Sbjct: 170 Q--FLYVLIGACLFANYEKSNRMDYVRRFYDAVSTFKLSLPTPIM--AGVRTPTRQFSSC 225 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L D L I A G+G + +R LG+ I G G IPF K Sbjct: 226 VLIETDDSLDSINAAAGSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHF 285 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA + WH++VE L L+ N G + R ++ I L + Sbjct: 286 QTAVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYE 345 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRK--ISAVALW 546 R+ + TLFSP +V L+D + ++ FE Y YE+ RK I A+ L+ Sbjct: 346 RLIKGGNITLFSPSDVPGLYDAFFEDQAKFEELYVKYEQD------DSIRKQTIKAMELF 399 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSP--QQHVGVVHSSNLCTEITL--------NSSSEE 596 +L TG +I D CN SP +H + SNLC EI L N E Sbjct: 400 SILLQERASTGRIYIQNVDHCNTHSPFNPEH-APIRQSNLCLEIALPTKPLKDINDKDGE 458 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 A+C L + NL A ++ + S I VR LDN++ + + A+ ++ + R + Sbjct: 459 IALCTLAAFNLGALENLDE---LEELSDI--IVRALDNLLSYQDYPMAAAEIASESRRTL 513 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G++ + L + Y+ A + ++ E I ++ + AS +LA+E GA + F + + Sbjct: 514 GVGVINYAYYLAKNGVKYSDGSANGLTHQTFEAIQYYLLKASNQLAKEVGACAKFNETTY 573 Query: 717 DQGVFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 QG+ PID+ L +EL R W+ L+ +KT G+RNS A+ P+ T + Sbjct: 574 SQGILPIDTYKKDLDKVCEEEL------RYDWEALRGEIKTHGLRNSTLTALMPSETSSQ 627 Query: 775 ICGVSQSIDPSYQNLYVKSNMSG 797 I + I+P + +K++ G Sbjct: 628 ISNATNGIEPPRGYISIKASKDG 650 >gi|299537050|ref|ZP_07050353.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus fusiformis ZC1] gi|298727291|gb|EFI67863.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus fusiformis ZC1] Length = 697 Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 189/700 (27%), Positives = 330/700 (47%), Gaps = 97/700 (13%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------AFEY------- 295 RY E V RL + ++ + YL ++ YE+ F A++Y Sbjct: 32 RYFLEYVNVRLRYFIDIEEKIRYLVDEGYYEKAFIDMYEMEFIKKLYKKAYDYNFRFPSF 91 Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 + YD Y + +G I E + + +A+ LA T +R+VE ++ ++ Sbjct: 92 MSASKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTALAERSVE--AMMEAYQ--P 147 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG + +L SCF ++ D + I + L++ GG+G + T +R LG Sbjct: 148 ATPTALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGD 207 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I ++ GVIP K+ ++ NQ G+R G+ YL +H D+E F+ +K DD Sbjct: 208 PIKEILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADD 267 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYEN-YERQAD 530 + R ++T IP +F + + ++ LFSP D+ YGK EI+ + Y D Sbjct: 268 KIRLATLSTGIIIPSIFFELMKRDKDIVLFSP---YDIFKEYGKRMSEISISDMYYELLD 324 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +I+ ++++A L+ ++ FE+G+P+ F D N P +++G V SNLCTEI Sbjct: 325 NPKIRKIKRLNARKLYTEVKKAQFESGYPFEIFDDNVNKVHPLKNIGRVKMSNLCTEIL- 383 Query: 591 NSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +ET++ CNLGSI++ H A+ D+ L + TA+ +L NV Sbjct: 384 --QVQETSIITDQDQPNDYGLDVSCNLGSIDI--HAASKVKDFGTL---VDTAMHLLTNV 436 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + + + K+N ++GLG M L I Y S E+++ D ME +++++ Sbjct: 437 SQMTHIKNVPSVAKANQLMHSVGLGCMNLHGHLVTEGILYGSRESIDFMDHFMEAMNYYS 496 Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WD 747 + +S+E+A+E+ A + F+ S + G + I E + + +P W+ Sbjct: 497 LKSSMEMAKEKAATFYRFEDSDYASGSYFDQYINKAEEELSPVVLKALGNIPIITNKMWE 556 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 LK+ V G+ +S +AIAPT +I+ I + SI P + + V Sbjct: 557 TLKQDVMQYGLFHSYRLAIAPTGSISYIRSCTASIAPCTERVEV---------------- 600 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 RD D I + + + +D ++ A++++P LI+ + QK + Sbjct: 601 -----RDYADSRTIYPMPH----------LTNDNSHLYVEAYDVNPYDLIDLYAASQKHV 645 Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 DQ S+ LY+ D + ++L +Y AW+ G+K+ YY+R R Sbjct: 646 DQGISMTLYVTDNWTTEQLAKVYIYAWIKGIKSVYYVRQR 685 >gi|289446117|ref|ZP_06435861.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium tuberculosis CPHL_A] gi|289419075|gb|EFD16276.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium tuberculosis CPHL_A] Length = 736 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 179/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 107 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 166 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 167 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 226 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 227 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 286 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 287 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 343 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N LH L K+ ++ Sbjct: 344 SVGVTDAFLRAVERNG------------LHRLVNPRTG---------------KIVARMP 376 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 377 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 432 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IGLG+M Sbjct: 433 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 492 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 493 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 547 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ RN+ ++APT TI+ I G + Sbjct: 548 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 576 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + + ++ + VN + R + + +I+++ G + R+P ++ Sbjct: 577 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 635 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898 + TA EI P W + + Q+ ++ A S + L P+ +D IY AW +K Sbjct: 636 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 693 Query: 899 --TTYYLRSR 906 T Y SR Sbjct: 694 GITVYRYGSR 703 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ +P K++ +R+G + FD ++I A+ +A +R + D Sbjct: 43 SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDM 85 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 TV + + I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 86 PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 142 >gi|332306883|ref|YP_004434734.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174212|gb|AEE23466.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 790 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 203/785 (25%), Positives = 333/785 (42%), Gaps = 91/785 (11%) Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-P 214 S + +++ ++ A GL +VS V + + YDG+ D+ LI S+ LI + P Sbjct: 35 SIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETLIRSAADLISTDAP 94 Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y + AR + LR++ ++ P H +Y + + +A + M Sbjct: 95 DYQYLAARLAIFHLRKKAYGQ-FEPPALFAHVTQMIEMQKYDQHLLSDYSEAEF--QEMD 151 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKE 332 D+ + + RD F Y ++ L +Y + + G E Q ++ VA L + Sbjct: 152 DY--------IDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL-FAD 202 Query: 333 TEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGAL 387 K+ R FY+ S F TP + +G R P Q SSC L D L I Sbjct: 203 YPKDTRMDYIKRFYDATSKFKISLPTPIM--AGVRTPTRQFSSCVLIEAGDSLDSINATA 260 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 G+G + +R LG+ I G G IPF K + +QGG R GA Sbjct: 261 SAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSCSQGGVRGGA 320 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 + WH++VE L L+ N G + R ++ L +R+ ++ +LFSP +V Sbjct: 321 ATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKDQHISLFSPSDV 380 Query: 508 SDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 L+D + +FE Y YE+ + +V AV L+ + TG ++ Sbjct: 381 PGLYDAFFADQAKFEELYVKYEQDDSIRKTQV----KAVELFSLFMQERASTGRIYLQNV 436 Query: 565 DPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQ 615 D CN SP V + SNLC EI L N + E A+C L + NL A + Sbjct: 437 DHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLSAFNLGAIESVED 496 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F A AVR LDN++D + + A + R +G+G++ F L + Y+ Sbjct: 497 F-----AEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINFAYYLAKNGVKYS 551 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRD 734 A + + E + +H + AS LA+E+GA F + + QG+ PID+ L ++ D Sbjct: 552 DGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPIDTYKKDLDKICD 611 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 E WD L+ +K G+RNS A+ P+ T + I + I+P ++ VKS+ Sbjct: 612 E-----PLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISVKSS 666 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G V+ + + +D ++ ++ DL +DG Sbjct: 667 KDG---VLKQVVPEYERLKDKYE--LLWDLPSNDG------------------------- 696 Query: 855 WLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAWLMGLKTTYYLRS 905 ++ QK++DQ S N D + G K+ D + A+ +G+KT YY + Sbjct: 697 -YLQLTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLL--TAYQLGVKTLYYHNT 753 Query: 906 RSATS 910 R + Sbjct: 754 RDGAA 758 >gi|15607710|ref|NP_215084.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium tuberculosis H37Rv] gi|148660339|ref|YP_001281862.1| putative ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|148821771|ref|YP_001286525.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis F11] gi|167968357|ref|ZP_02550634.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis H37Ra] gi|215402336|ref|ZP_03414517.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 02_1987] gi|215429402|ref|ZP_03427321.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis EAS054] gi|215444680|ref|ZP_03431432.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T85] gi|218752208|ref|ZP_03531004.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis GM 1503] gi|254230912|ref|ZP_04924239.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis C] gi|254363528|ref|ZP_04979574.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis str. Haarlem] gi|254549524|ref|ZP_05139971.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199573|ref|ZP_05767064.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T46] gi|260203727|ref|ZP_05771218.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis K85] gi|289441955|ref|ZP_06431699.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T46] gi|289573162|ref|ZP_06453389.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis K85] gi|289744283|ref|ZP_06503661.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 02_1987] gi|289752609|ref|ZP_06511987.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis EAS054] gi|289756647|ref|ZP_06516025.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T85] gi|289760689|ref|ZP_06520067.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis GM 1503] gi|294996080|ref|ZP_06801771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis 210] gi|297633060|ref|ZP_06950840.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis KZN 4207] gi|297730037|ref|ZP_06959155.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis KZN R506] gi|306774674|ref|ZP_07413011.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu001] gi|306779425|ref|ZP_07417762.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu002] gi|306783211|ref|ZP_07421533.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu003] gi|306787581|ref|ZP_07425903.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu004] gi|306792131|ref|ZP_07430433.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu005] gi|306796318|ref|ZP_07434620.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu006] gi|306802177|ref|ZP_07438845.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu008] gi|306806386|ref|ZP_07443054.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu007] gi|306966585|ref|ZP_07479246.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu009] gi|306970778|ref|ZP_07483439.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu010] gi|307078502|ref|ZP_07487672.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu011] gi|307083064|ref|ZP_07492177.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu012] gi|313657365|ref|ZP_07814245.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis KZN V2475] gi|81669533|sp|O53767|NRDZ_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase nrdZ gi|2909629|emb|CAA17441.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium tuberculosis H37Rv] gi|124599971|gb|EAY58981.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis C] gi|134149042|gb|EBA41087.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis str. Haarlem] gi|148504491|gb|ABQ72300.1| putative ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|148720298|gb|ABR04923.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis F11] gi|289414874|gb|EFD12114.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T46] gi|289537593|gb|EFD42171.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis K85] gi|289684811|gb|EFD52299.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 02_1987] gi|289693196|gb|EFD60625.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis EAS054] gi|289708195|gb|EFD72211.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis GM 1503] gi|289712211|gb|EFD76223.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T85] gi|308216780|gb|EFO76179.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu001] gi|308327639|gb|EFP16490.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu002] gi|308331994|gb|EFP20845.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu003] gi|308335781|gb|EFP24632.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu004] gi|308339387|gb|EFP28238.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu005] gi|308343263|gb|EFP32114.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu006] gi|308347155|gb|EFP36006.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu007] gi|308351070|gb|EFP39921.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu008] gi|308355729|gb|EFP44580.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu009] gi|308359684|gb|EFP48535.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu010] gi|308363589|gb|EFP52440.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu011] gi|308367225|gb|EFP56076.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu012] gi|323721044|gb|EGB30108.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis CDC1551A] gi|326902399|gb|EGE49332.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis W-148] Length = 692 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 178/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 64 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N L +P K+ ++ Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IGLG+M Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 449 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ RN+ ++APT TI+ I G + Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + + ++ + VN + R + + +I+++ G + R+P ++ Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 592 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898 + TA EI P W + + Q+ ++ A S + L P+ +D IY AW +K Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 650 Query: 899 --TTYYLRSR 906 T Y SR Sbjct: 651 GITVYRYGSR 660 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A +R + D TV + + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 56 RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99 >gi|260185444|ref|ZP_05762918.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis CPHL_A] Length = 693 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 178/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 64 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N L +P K+ ++ Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IGLG+M Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 449 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ RN+ ++APT TI+ I G + Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + + ++ + VN + R + + +I+++ G + R+P ++ Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 592 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898 + TA EI P W + + Q+ ++ A S + L P+ +D IY AW +K Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 650 Query: 899 --TTYYLRSR 906 T Y SR Sbjct: 651 GITVYRYGSR 660 Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A +R + D TV + + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 56 RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99 >gi|261493905|ref|ZP_05990415.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310438|gb|EEY11631.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 756 Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 207/808 (25%), Positives = 342/808 (42%), Gaps = 92/808 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +GT N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ ++ P H + +Y + + Sbjct: 65 AAADLITKDTPDYQYLAARLAIFHLRKKAYGQ-FEPPHLYEHVKKLVALGKYDADLLSDY 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 E+M F + + RD F Y ++ L +Y + ++G E Q + Sbjct: 124 TPEEW--ETMNGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231 Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I +A + KY G+G + +R LG+ I G G IPF K Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTA 288 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA Y WH++ E + L+ N G + R M+ I + +R+ Sbjct: 289 VKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLI 348 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 + +LFSP +V L++ + +FE Y YE+ + RK+ AV L+ ++ Sbjct: 349 KGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQ----RKVKAVELFSLLMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602 TG +I D CN SP V + SNLC EI L + E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL + D+L VR LD ++D + + A+ S+ RA+G+G++ Sbjct: 465 SAFNL-----GTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + + E I ++ + AS+ LA+E+GA + F + + +G+ P Sbjct: 520 YAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLP 579 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ E+ DEL W++L++ + G+RNS A+ P+ T + I + I Sbjct: 580 IDTYK--KEI-DELT-QEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV + + LWD IP+ Sbjct: 636 EPPRGYISVKASKDGILKQVVPEYERLKAYYELLWD-------------------IPNMD 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR-------QAWL 894 +H QK++DQA S N D + + A+ Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPDRFAEAKVPMKVLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V+ +G G Sbjct: 724 YGLKTLYYQNTRDGAEDVQDDLDEGCAG 751 >gi|51893898|ref|YP_076589.1| ribonucleotide-diphosphate reductase subunit alpha [Symbiobacterium thermophilum IAM 14863] gi|51857587|dbj|BAD41745.1| ribonucleotide reductase [Symbiobacterium thermophilum IAM 14863] Length = 776 Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 178/649 (27%), Positives = 285/649 (43%), Gaps = 110/649 (16%) Query: 295 YLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVE--FYNLL 346 ++ ++ RY + +G+R E P RVA +A E ++KE RAVE FY L+ Sbjct: 5 HIAKTVMEKRYLRMKEDGTR-ETPDEMLRRVARVIAAVEEKYGASKKEIRAVEERFYQLM 63 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 FM ++PT +GT QLS+CF+ V D L I+ +++ A++ + GG G ++ Sbjct: 64 DRQDFMPNSPTFTGAGTALGQLSACFVLPVGDSLPEIYETMKQAALIHQTGGGTGFAFSR 123 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G + + G + G + FL+V N + A+ QGG R+GA L H D+ +F++ + Sbjct: 124 LRPAGDVVRSSQGVASGPVSFLRVYNASTEAIKQGGTRRGANMGILRVDHPDILQFIESK 183 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 D + + N + I D FM+ + + + L +P N E Sbjct: 184 A----DITQITNFNISVAITDAFMEALEKGTEYELINP------------------RNGE 221 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 V K+SA +W K++ ++TG P I F D N R+P HV V+ ++N C Sbjct: 222 ---------VTGKLSAKLVWDKLVENAWKTGEPGIVFIDRINRRNPNNHVEVIEATNPCG 272 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINC 640 E L CNLGSINL A+F N + D+++L RTA R LDNVID N Sbjct: 273 EQPLPPYGS----CNLGSINL-ANFVKNPYTDRAEVDWERLGEVARTATRFLDNVIDANK 327 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + + + R IGLG+MG+ L + +PY S EAV + + M FI A+ S+ Sbjct: 328 YPLPQIAEKALRDRRIGLGIMGWAEMLVQMGLPYDSEEAVALGNRVMTFIKQKALEESMA 387 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ RG Y ++GS W + + RN Sbjct: 388 LAEVRGPYPEWEGSQWHKAGLKV-----------------------------------RN 412 Query: 761 SNCMAIAPTATIANICG-----VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 + +APT TI+ S I+P + ++ + N +G + + +R+ Sbjct: 413 ATLTTVAPTGTISLFAARPDLPCSGGIEPKFALVFTR-NQAGALMLDVDGQFASIARREG 471 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W + G+ + +P+ ++I AT+ +I P W + R Q L + Sbjct: 472 WYSDELMQQVADRGTARGVSGVPEKWQRIFATSHDITPEWHV----RMQAAFQGGDGLPV 527 Query: 876 ---YLDEPSGKKLDFI-----------YRQAWLMGLKTTYYLRSRSATS 910 +D K ++F Y AW +GLK R S S Sbjct: 528 DQQPVDAAVSKTINFPHHATVEDVGKSYALAWQLGLKGITVYRDGSRAS 576 >gi|254361271|ref|ZP_04977414.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] gi|261495802|ref|ZP_05992237.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. OVINE] gi|110735341|gb|ABG89241.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica] gi|153092767|gb|EDN73810.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] gi|261308536|gb|EEY09804.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. OVINE] Length = 756 Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 207/808 (25%), Positives = 342/808 (42%), Gaps = 92/808 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +GT N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ ++ P H + +Y + + Sbjct: 65 AAADLITKDTPDYQYLAARLAIFHLRKKAYGQ-FEPPHLYEHVKKLVALGKYDADLLSDY 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 E+M F + + RD F Y ++ L +Y + ++G E Q + Sbjct: 124 TPEEW--ETMNGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K + FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231 Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I +A + KY G+G + +R LG+ I G G IPF K Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTA 288 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA Y WH++ E + L+ N G + R M+ I + +R+ Sbjct: 289 VKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLI 348 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 + +LFSP +V L++ + +FE Y YE+ + RK+ AV L+ ++ Sbjct: 349 KGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQ----RKVKAVELFSLLMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602 TG +I D CN SP V + SNLC EI L + E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL + D+L VR LD ++D + + A+ S+ RA+G+G++ Sbjct: 465 SAFNL-----GTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVIN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + + E I ++ + AS+ LA+E+GA + F + + +G+ P Sbjct: 520 YAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLP 579 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ E+ DEL W++L++ + G+RNS A+ P+ T + I + I Sbjct: 580 IDTYK--KEI-DELT-QEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P + VK++ G VV + + LWD IP+ Sbjct: 636 EPPRGYISVKASKDGILKQVVPEYERLKAYYELLWD-------------------IPNMD 676 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR-------QAWL 894 +H QK++DQA S N D + + A+ Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYK 723 Query: 895 MGLKTTYYLRSR-SATSVEKSTLKGVDG 921 GLKT YY +R A V+ +G G Sbjct: 724 YGLKTLYYQNTRDGAEDVQDDLDEGCAG 751 >gi|33152745|ref|NP_874098.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus ducreyi 35000HP] gi|33148969|gb|AAP96487.1| ribonucleoside-diphosphate reductase, alpha chain [Haemophilus ducreyi 35000HP] Length = 756 Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 200/794 (25%), Positives = 335/794 (42%), Gaps = 93/794 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + +++ ++ A GL +VS V + Y G+ SD+ +I Sbjct: 4 QLMVTKRNGQQEPLDLEKIHRVITWAAEGLANVSVSQVELSAHIQFYQGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI KE P+Y + AR + LR++ T YP + +I++ Sbjct: 64 KAAADLISKETPDYQYLAARLAVFHLRKKAYGT---------------FYPPHLFEHIQK 108 Query: 263 GVKA----RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 VK LL + + + + L +ERD F Y ++ L +Y + + G E Sbjct: 109 LVKLGKYDNLLLKQYSEEEWDIMNGFLVHERDMNFSYAAVKQLEGKYLVQNRVTGEIYES 168 Query: 317 PQAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372 Q ++ VA L + + + FY+ S+F TP + +G R P Q SSC Sbjct: 169 AQFLYILVAACLFSSYPKATRLDYIHRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCV 226 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L D L I G+G + +R LG+ I G IPF K Sbjct: 227 LIECGDSLDSINATSSAVIKYVSQRAGIGINAGAIRALGSPIRNGEAFHTGCIPFYKHFQ 286 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + +QGG R GA + WH++VE + L+ N G + R M+ I L +R Sbjct: 287 TAVKSCSQGGVRGGAATVFYPIWHLEVESLVVLKNNRGVEDNRCRHMDYGVQINKLIYQR 346 Query: 493 VTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 + + + TLFSP +V L++ + ++FE+ Y YE+ + + I A+ L+ + Sbjct: 347 LIKGSDITLFSPSDVPGLYEAFFADQEKFELLYLQYEQDPSIRK----KSIKAIELFSLL 402 Query: 550 LTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC 600 + TG +I D N SP V + SNLC EI L N E A+C Sbjct: 403 MQERASTGRIYIHNVDHSNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNINDEQGEIALC 462 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L + NL + D+L AVR LD ++D + ++ A+K R++G+G+ Sbjct: 463 TLSAFNL-----GTLQNLDELEPLADLAVRALDALLDYQNYPVKAAEKGAIARRSLGIGV 517 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 + + L + Y+ A ++ + E + ++ + AS+ LA+E G F + + +G+ Sbjct: 518 INYAYYLAKHGVRYSDGSANDLTHRTFEAVQYYLLKASMNLAKELGPCKGFNETTYAKGI 577 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PIDS + D+L S W+ L+ +K G+RNS A+ P+ T + I + Sbjct: 578 LPIDS---YKKDIDQLT-QEPSHYDWEALRADIKQFGLRNSTLTALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K++ G VV + + + LWD IP+ Sbjct: 634 GIEPPRGYVSIKASKDGILKQVVPEYETLKDQYELLWD-------------------IPN 674 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---A 892 +H QK++DQA S N D E + + + A Sbjct: 675 MDGYLHLVGI-------------MQKFVDQAISANTNYDPKRFEDDKVPMKILLKDLLTA 721 Query: 893 WLMGLKTTYYLRSR 906 + GLKT YY +R Sbjct: 722 YKYGLKTLYYQNTR 735 >gi|300741627|ref|ZP_07071648.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia dentocariosa M567] gi|300380812|gb|EFJ77374.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia dentocariosa M567] Length = 722 Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 195/697 (27%), Positives = 305/697 (43%), Gaps = 83/697 (11%) Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305 E Q PE F RY FD V Y F F +LG Y Y Sbjct: 78 ENQYYEPELFDRY---------------SFDFVKSLFKRAYAAKFRFPTFLGAFKFYTSY 122 Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R + F RV M L K A E + + S F +TPT N+G + Sbjct: 123 ALKTFDGQR--YLERFEDRVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLNAGKK 180 Query: 365 H-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +L SCFL + D++ I ++ L+K GG+ T +R GA I +S G Sbjct: 181 QRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQSSG 240 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 241 VIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTLSLGV 300 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 IPD+ + +N LFSP +V ++ + + ++ E Y D I+ KI+A Sbjct: 301 VIPDITFELAKRNEDMYLFSPYDVERIYGVAFSDINVS-EKYYEMVDDSRIRK-TKINAR 358 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595 ++ + + FE+G+P++ F+D N +P + G + SNLC+EI S Sbjct: 359 EFFQTIAEVQFESGYPYVMFEDTVNRSNPIE--GKIIMSNLCSEILQVSKPSIYHDDLSY 416 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650 + CNLGS+N+ D D L T+ TA+R L V D + ++ ++ N Sbjct: 417 AEIGKDISCNLGSLNIAM-----TMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 471 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YS 709 A+GLG M L H+ Y S E ++ + +++HAI AS+E+A+ERG + Sbjct: 472 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 531 Query: 710 SFKGSLWDQGVFPIDSIGLLAE-----VRDELAMNRT-SRLPWDELKKRVKTIGMRNSNC 763 F+ S + G F I E VR+ A + +R W +L V GM N N Sbjct: 532 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 591 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I G + SI P + + K G F+ N+ Sbjct: 592 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 638 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881 N+E D ++EI +I++ + + +DQ SL L+ D + Sbjct: 639 ----------NLEYFQD--------SYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 680 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + ++ AW G+KT YY+R R ++E + ++G Sbjct: 681 TRDINRAQIYAWRKGIKTIYYIRLRQ-MALEGTEVEG 716 >gi|169827409|ref|YP_001697567.1| ribonucleoside-diphosphate reductase subunit alpha [Lysinibacillus sphaericus C3-41] gi|168991897|gb|ACA39437.1| Ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus sphaericus C3-41] Length = 697 Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 181/664 (27%), Positives = 317/664 (47%), Gaps = 76/664 (11%) Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLA 329 M + D + Y+ +F F ++ YD Y + +G I E + + +A+ LA Sbjct: 68 MYEMDFIKKLYKKAYDYNFRFPSFMSASKFYDSYAMKSRDGEEILEKYEDRIVIIALYLA 127 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388 T +R+VE ++ ++ +TPT NSG + +L SCF ++ D + I + Sbjct: 128 QGNTVLAERSVE--AMMEAYQ--PATPTALNSGKKARGELVSCFKLSMDDSMNSIAENIG 183 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L++ GG+G + T +R LG I ++ GVIP K+ ++ NQ G+R G+ Sbjct: 184 YCLELSRLGGGVGVNLTDLRPLGDPIKEILNRASGVIPVAKLLENSFSYSNQLGQRNGSG 243 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL +H D+E F+ +K DD+ R ++T IP +F + + ++ LFSP Sbjct: 244 VVYLNIFHADIENFISSKKPNADDKIRLATLSTGIIIPSIFFELMKRDKDIVLFSP---Y 300 Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D+ +YGK EI+ E Y D +I+ ++++A L+ ++ FE+G+P+ F D Sbjct: 301 DIFKVYGKRMSEISISEMYYELLDNPKIRKIKRLNARRLYTEVKKAQFESGYPFEIFDDN 360 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------CNLGSINLLAHF 611 N P +++G V SNLCTEI +ET+V CNLGSI++ H Sbjct: 361 VNDVHPLKNIGRVKMSNLCTEIL---QVQETSVITDQDQPNEYGLDVSCNLGSIDI--HA 415 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 A+ D++ L I TA+ +L NV + + + K+N ++GLG M L Sbjct: 416 ASKVNDFEAL---IDTAMHLLTNVSQMTHIKNVPSVAKANQLMHSVGLGCMNLHGHLVTE 472 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL 729 I Y S +++ D ME ++++++ +S+E+A+E+ + F+ S + G++ + Sbjct: 473 GIMYGSKDSIHFMDRFMEAMNYYSLKSSMEMAKEKAETFYRFEDSDYASGIYFDQYVNKT 532 Query: 730 AEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 E + +P W LK+ V G+ +S +AIAPT +I+ I + SI Sbjct: 533 EEELSPAVLKALGNIPIITSKMWGLLKQDVMQYGLFHSYRLAIAPTGSISYIRSCTASIS 592 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + + V RD D I + + + ++ Sbjct: 593 PCTERVEV---------------------RDYADSRTIYPMPH----------LTNENSH 621 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ A+++DP LI+ + QK +DQ S+ LY+ D + ++L +Y AW+ G+K+ YY Sbjct: 622 LYVEAYDVDPYDLIDLYAASQKHVDQGISMTLYVTDNWTTEQLAKVYIYAWVKGIKSVYY 681 Query: 903 LRSR 906 +R R Sbjct: 682 VRQR 685 >gi|222081802|ref|YP_002541167.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium radiobacter K84] gi|221726481|gb|ACM29570.1| ribonucleoside-diphosphate reductase, alpha subunit [Agrobacterium radiobacter K84] Length = 717 Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 190/661 (28%), Positives = 299/661 (45%), Gaps = 75/661 (11%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y + F F +LG Y Y L +G R +E + VA+ LA Sbjct: 85 FNFVRDLFDHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLA--- 141 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 142 QGNESLARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLMRVEDNMESIGRSINSAL 201 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 202 QLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 261 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP +V ++ Sbjct: 262 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSPYDVERVY 321 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + + E AD K +KI A ++ + + FE+G+P+I F+D N + Sbjct: 322 GVPFTEISVTEKYREMVADNHIRK--KKIKARDFFQVIAEIQFESGYPYIMFEDTVNRAN 379 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D D Sbjct: 380 PI--AGRITMSNLCSEILQVSEASTYRDDLSYEHMGKDISCNLGSLNIAA-----AMDSD 432 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 TI TA+R L V D++ ++ +K N AIGLG M L I Y S E Sbjct: 433 NFGKTIETAIRALTAVSDMSRISSVPSIEKGNDESHAIGLGQMNLHGYLARERILYGSEE 492 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSI 726 V+ + +++HAI AS LA ER ++ F+ S + G + + + Sbjct: 493 GVDFTNIYFYTVTYHAIRASNRLAAERERSFKGFENSKYASGDYFDKYTEQEWKPATERV 552 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 L E ++ +R W ELK+ V T G+ N N A+ PT +I+ I + SI P Sbjct: 553 RTLFET---AGIDIPTREDWQELKQAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP-- 607 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 +V++++ R E MI + Y + N D+L + Sbjct: 608 -------------------IVSKIEIRK---EGMIGRVYYPAAFMTN-----DNLD-YYQ 639 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R Sbjct: 640 DAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRL 699 Query: 906 R 906 R Sbjct: 700 R 700 >gi|326783874|ref|YP_004324268.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] gi|310003886|gb|ADO98281.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] Length = 766 Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 184/692 (26%), Positives = 316/692 (45%), Gaps = 48/692 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ G + + +++ +VE AC GL VS+ V ++ YDG++ ++++ L+ Sbjct: 5 IKVVKRAGHIEPLDLEKMHKMVELACDGLAGVSASQVEIQSGIQFYDGMTTAEIQGILVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI+ + PNY V AR LL LR+ + + HE+ L + R +++G Sbjct: 65 SASDLIDLDAPNYQYVAARLLLFGLRKNLYGRI---------HELPTLLDQ-IKRGVDKG 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + ++ L + +ERD+ F Y GL+ + D+Y + G+ E PQ + Sbjct: 115 IYDGDILNKYTKSEIEDLDKIIDHERDYLFTYAGLRQVVDKYLVQDRSTGALYETPQFMY 174 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + +AM + E E R +YN +S TP + G R P Q +SC L V Sbjct: 175 LLIAMTI-FAEYPPENRIDYVTRYYNAISRHKINIPTPIM--GGVRTPIRQFASCVLVDV 231 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L IF + G+G + +RG+ + I G + GV+PFLK T Sbjct: 232 DDTLDSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVR 291 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R ++ Sbjct: 292 CCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIED 351 Query: 497 AGWTLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +L + +G +F+ Y YE E RK+ A L +L E Sbjct: 352 KEITLFSPHSCPNLFESFGTPDFDELYCRYELD----ESIPKRKVRAQELIMNLLKERAE 407 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607 TG +I D CN S + V SNLC EITL ++ E A+C L +IN+ Sbjct: 408 TGRIYIMNIDHCNDHSSFKD--KVSMSNLCQEITLPTEPLQHIDAIDGEIALCILSAINV 465 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 ++L +VR L+ +ID + ++ A+ + R++G+G +G L Sbjct: 466 -----GKLTRLEELEDLCDLSVRSLEELIDYQDYPVKAAELATLGRRSLGVGYIGLAHYL 520 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y S +A + + E ++ + +S +LA+E+G + F + + G+ PID+ Sbjct: 521 AKHGWKYDSQDAWDAVHKLTESFQYYLLKSSNQLAKEKGCCTDFFSTKYSDGILPIDTYK 580 Query: 728 LLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 RD + + + W+ L+ + G+R+S A P+ + + + + I+P Sbjct: 581 -----RDVDEITKVGLKHDWESLRASIVEHGLRHSTLSAQMPSESSSVVSNATNGIEPPR 635 Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817 L +K + G VV S+ + LWD Sbjct: 636 DYLSIKKSKKGPLKQVVPSYGHLKNNYTLLWD 667 >gi|215410107|ref|ZP_03418915.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 94_M4241A] gi|298524058|ref|ZP_07011467.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis 94_M4241A] gi|298493852|gb|EFI29146.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis 94_M4241A] Length = 692 Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 177/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 64 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N L +P K+ ++ Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R +GLG+M Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKVGLGVM 449 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ RN+ ++APT TI+ I G + Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + + ++ + VN + R + + +I+++ G + R+P ++ Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 592 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898 + TA EI P W + + Q+ ++ A S + L P+ +D IY AW +K Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 650 Query: 899 --TTYYLRSR 906 T Y SR Sbjct: 651 GITVYRYGSR 660 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A +R + D TV + + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 56 RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99 >gi|88801049|ref|ZP_01116597.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp. MED297] gi|88776188|gb|EAR07415.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp. MED297] Length = 757 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 189/697 (27%), Positives = 309/697 (44%), Gaps = 52/697 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L+I DG L +++ +++ A GL+ VS V + YDG+S +++ L+ Sbjct: 3 LQIKKRDGRLEPIQLEKIHRVLQWASEGLKKVSVSEVELKARIQFYDGMSTTEIHEMLVR 62 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +++P+Y + AR + LR++ ++ P +Y + R + E Sbjct: 63 SAADLISDRQPDYQFMAARLAIFHLRKQAFGR-FEPPH---------VY-DLVTRLVNER 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 +L + + D L L + RD F Y G++ L +Y + + G E PQ + Sbjct: 112 RYDPILLSAYSEADWDELNGCLDHSRDLDFAYAGVKQLQGKYLVQDRVTGRIFESPQFVY 171 Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + + L E R +FY S+ F TP + +G R P Q SSC L Sbjct: 172 LLIGACL-FSGYPAETRLTYVKKFYQAASTHRFSLPTPIM--AGVRTPTRQFSSCVLIEC 228 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +RG+G+ I G IPF K+ Sbjct: 229 DDTLDSINATSSSVVNYVSQRAGIGINAGRIRGIGSPIRSGEAFHTGCIPFYKLFQSAVK 288 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WHI+ EE L L+ N G D R ++ + L +R+ Q+ Sbjct: 289 SCSQGGIRGGAATVFYPLWHIEAEELLVLKNNRGVDENRCRHLDYGVQLNRLMYQRLIQD 348 Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + +LFSP EV L+D + ++ FE Y+ YE RK++A L+ ++ Sbjct: 349 SHISLFSPSEVPGLYDAFFEDQARFETLYKQYEEDTSIRR----RKVNARDLFALLMQER 404 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGS 604 TG +I D CN P + SNLC EI +L+ E A+C L + Sbjct: 405 ASTGRIYIQNVDHCNEHGPFDPAKAPIRQSNLCMEIALPTKPLQSLDDEQGEIALCTLAA 464 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +NL ++ D D+ A + VR LD ++D + ++ A+ S H R +G+G++ + Sbjct: 465 VNL--GVLDSLDDIDETAELL---VRALDALLDYQHYPVKAAELSTHKRRPLGVGVINYA 519 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y A + + E + F +SAS LA+E+GA S F + +G PID Sbjct: 520 YYLAKHGYRYDDEGAKGLTHRTFERLQFALLSASNRLAREQGACSGFAETKLAKGSMPID 579 Query: 725 --SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 L A ++ L + W L++ + G+RNS A+ P+ T A I + I Sbjct: 580 RYKADLDAVCQEPLLCD------WAALRESILEHGVRNSTLSALMPSETSAQIANATNGI 633 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDE 818 +P + +K++ G V + Q D LWD+ Sbjct: 634 EPPRALVSIKASKDGVLKQVVPEIERLADQYDLLWDQ 670 >gi|303325479|ref|ZP_07355922.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. 3_1_syn3] gi|302863395|gb|EFL86326.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. 3_1_syn3] Length = 774 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 171/625 (27%), Positives = 286/625 (45%), Gaps = 90/625 (14%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHF 351 +L RY ++G E P+ F RVA +A +E + E+ + E FY+L++ + F Sbjct: 33 VLQKRYLRKSLDGKLSETPRDLFWRVASAIAAEEGKYERSSCEPEALARDFYDLMTGWKF 92 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G ++ +R Sbjct: 93 LPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKE 152 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + T G + G + FL++ N + QGG R+GA L H D+ +F+ ++ G+ Sbjct: 153 SRVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILDFIRAKEKEGE 212 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 ++ N + + + FM+ V + DE DL R + Sbjct: 213 ----FNNFNLSVGLTEAFMQAVEK---------DEHYDL----------------RAPNT 243 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V ++ A ++ ++ +++G P I F D N +P G + S+N C E L Sbjct: 244 GE--VVDRLRARDVFDLLVKKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLL 301 Query: 592 SSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 CNLGSINL + A + D+ +L + +VR LDNVID + Sbjct: 302 PFE----ACNLGSINLACFYLPGHNDDADPARDGIDWAELRRVVHLSVRFLDNVIDASLF 357 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + + ++ +R IGLG+MGF L L +PY S E + +A+ M F+ AS EL Sbjct: 358 PLPRIAETVRKNRKIGLGVMGFADLLFELGVPYNSREGIALAERVMGFVQEEGHKASAEL 417 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ERG + ++ S + + K RN+ Sbjct: 418 AKERGPFPAYPASTY----------------------------------AKAKKGPYRNA 443 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAM 820 IAPT T++ I G S ++P + + ++ + G+ V VN + L L + Sbjct: 444 TVTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALAATGLAGHEL 503 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + D GSI +++ +P L+K+ TA +I+P+W + + Q+ D A S + L Sbjct: 504 M-DSVVAKGSIQDMDFLPAKLRKVFVTAMDIEPVWHLRMQAAFQRHTDNAVSKTVNLSNT 562 Query: 881 SGKKLDF-IYRQAWLMGLKTTYYLR 904 + ++ F IY A+ G K R Sbjct: 563 ATEQDIFDIYWLAYKEGCKGVTVYR 587 >gi|88859280|ref|ZP_01133920.1| ribonucleotide-diphosphate reductase alpha subunit [Pseudoalteromonas tunicata D2] gi|88818297|gb|EAR28112.1| ribonucleotide-diphosphate reductase alpha subunit [Pseudoalteromonas tunicata D2] Length = 760 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 201/793 (25%), Positives = 342/793 (43%), Gaps = 83/793 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKELLDLDKIHRVIEWAAKGLNNVSVSQVELKSHIQFYDGIRTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ ++ P+ LY ++ + +E+ Sbjct: 64 KAAADQISKESPDYQFLAARLAIFHLRKKAYGQ-FEPPR---------LY-DHVVKMVED 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 L + L L + RD F Y ++ L +Y + + G E Q Sbjct: 113 NRYDAHLLADYTQAEFEQLDEVLDHNRDLTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 ++ VA L K ++ + FY+ +S F TP + +G R P Q SSC L Sbjct: 173 YILVAASLFSKYPQSIRLDYIKRFYDAVSQFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G D R ++ + R+ ++ Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKVMYSRLIKD 350 Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + ++ FE Y YE+ + ++I A+ L+ + Sbjct: 351 DYITLFSPSDVPGLYDAFFEDQALFESLYVQYEQDPAIRK----KRIKAIELFSMFVQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604 TG ++ D CN SP V + SNLC EI L + E A+C L + Sbjct: 407 ASTGRIYLQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLKHVMDEEGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + + +L AVR LDN++D + + AK + R +G+G++ + Sbjct: 467 FNLGAIDSLD-----ELEELAELAVRALDNLLDYQDYPVPAAKNATMNRRTLGVGVVNYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID Sbjct: 522 YYLAKNGKKYSDGSANALTHQTFEAIQYYLMKASNELAKEKGACPKFHETTYSQGLMPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D++ + RL WD L++ +K GMRNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDLDQIC-SEPLRLDWDGLRQSIKQYGMRNSTLSALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ VK++ G ++ + + +D ++ ++ D+ +DG Sbjct: 638 PRGHVSVKASKDG---ILKQVVPEYERLKDQYE--LLWDIPSNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGL 897 ++ QK+IDQ S N D E + + + A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQTVSANTNYDPGKFEGGKVPMKLLLKDLLTAYKFGV 726 Query: 898 KTTYYLRSRSATS 910 KT YY +R S Sbjct: 727 KTLYYHNTRDGAS 739 >gi|227494220|ref|ZP_03924536.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM 15436] gi|226831954|gb|EEH64337.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM 15436] Length = 718 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 197/662 (29%), Positives = 299/662 (45%), Gaps = 75/662 (11%) Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE 332 DFD + Y + F F +LG Y Y L +G R + F RV+M +AL Sbjct: 85 DFDFIKSLFKRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVSM-VALYL 141 Query: 333 TEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQEN 390 K E+ + + + F +TPT N+G R +L SCFL V D++ I + Sbjct: 142 ARGNKEVAEYLVDEILAGRFQPATPTFLNAGKRARGELVSCFLLRVEDNMESIARGINSA 201 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S G++P +K+ D NQ G R+GA Sbjct: 202 LQLSKRGGGVALSLSNLREAGAPIKRIENQSSGIVPVMKLLEDAFSYANQLGARQGAGAV 261 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ +FLD ++ D++ R ++ IPD+ + N LFSP D+ Sbjct: 262 YLHAHHPDIMKFLDTKRENADEKIRIKSLSLGVVIPDITFELAKNNEDMYLFSP---YDV 318 Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YG F EI+ E Y + G I+ +KI+A ++ + + FE+G+P+I F+D N Sbjct: 319 ERVYGVPFTEISVTEKYREMVEDGRIRK-KKINARRFFQTIAEIQFESGYPYIVFEDTVN 377 Query: 569 IRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQF 616 +P + G + SNLC+EI T N + V CNLGS+N+ Sbjct: 378 RENPIK--GRITMSNLCSEILQVSEASTYNEDLTFSHVGKDISCNLGSLNIA-----KAV 430 Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D A T+ TA+R L V D+ N + ++ N AIGLG M L I Y Sbjct: 431 DSPDFALTVETAIRGLTAVSDLSNISSAPSIERGNRMSHAIGLGQMNLHGFLARERIFYG 490 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVR 733 S EA++ + +++ AI AS ++A+ERG ++ F+ S + G + I G Sbjct: 491 SEEALDFTNMYFYAVTYQAIKASTKIAKERGESFHGFEESKYYTGEYFTKYIEGEWVPTT 550 Query: 734 D---ELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 D E+ T LP W +L V+ GM + N AI PT +I+ I + SI P Sbjct: 551 DRVKEIFAGSTIYLPTPQDWKDLAAEVRENGMYHQNLQAIPPTGSISYINYSTSSIHPIV 610 Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + + K G ++ NE N+E D Sbjct: 611 SKIEIRKEGKIGRVYYPAPYMTNE-----------------------NLEYYQD------ 641 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A+EI P +I++ + + +DQ SL L Y D S + L+ Y AW G+KT YY+R Sbjct: 642 --AYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVSTRDLNKSYIYAWRKGIKTMYYMR 699 Query: 905 SR 906 R Sbjct: 700 IR 701 >gi|45686076|ref|YP_003839.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum virus] gi|37722500|gb|AAP33245.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum stebbensi virus] Length = 565 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 174/592 (29%), Positives = 260/592 (43%), Gaps = 98/592 (16%) Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 K K A + + F S+P L + +G+ P SCFL VPD + G+ E L Sbjct: 40 KPKLAEKLRDYACKGWFGYSSPILTSVTGSGLPI--SCFLLYVPDTIEGLVDHTSELRWL 97 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 + GG+ W VRG A KS G IPFL + A QG R+G+ AY+ Sbjct: 98 SVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMS 150 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ EF+ +R TGD R+ +++ I D+FM V + W L P + H Sbjct: 151 ISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDVFMMCVERGENWDLVDPKSGAVAH-- 208 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRS 571 +SA LW ++L F TG P++ F D N + Sbjct: 209 -------------------------TVSARELWERILETRFRTGEPYLNFIDAANRGLHP 243 Query: 572 PQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 + G+ + SNLC EI L ++++ TAVC L S+NL ++D + + V Sbjct: 244 ALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVE 297 Query: 631 VLDNVIDI--------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +LDNVI HT +A +S R+IGLG MG+ L IP+ S EAV + Sbjct: 298 MLDNVIQTFVDEAPLKTPHT-ARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRL 356 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 I A+ A+ LA+ERG G Sbjct: 357 TGIIFGGIKSAAVRATRALAKERGEAPDLTG----------------------------- 387 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 G+RN++ +A+AP A A + G S S++P YV G V Sbjct: 388 -------------CGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAV 434 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +L +L+ L E + + + GS+ +I +PD LKK++ T+FE+D +++ A+ Sbjct: 435 NPYLKRDLESLGLDTEKVWDSIVLNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVKQAAE 494 Query: 863 RQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 RQ+ + Q QSLNL+ + K L ++R AW G K YYLR+ + + K Sbjct: 495 RQRHLCQGQSLNLFFPMGADKTDLSDVHRLAWKSGCKGLYYLRTCAGRTGHK 546 >gi|18656499|gb|AAL77800.1|AF389451_7 ribonucleoside-diphosphate reductase alpha chain [Tiger frog virus] Length = 565 Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 170/568 (29%), Positives = 251/568 (44%), Gaps = 98/568 (17%) Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F S+P L + +G+ P SCFL VPD + G+ E L+ GG+ W VRG Sbjct: 56 FGYSSPILTSVTGSGLP--ISCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 A KS G IPFL + A QG R+G+ AY+ H D+ EF+ +R T Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 GD R+ +++ I D FM+ V + W L P + H Sbjct: 167 GDVNRKNLNIHHGVNITDAFMRCVERGENWDLVDPKSGAVAH------------------ 208 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586 +SA LW ++L F TG P++ F D N + + G+ + SNLC Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCN 259 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638 EI L ++++ TAVC L S+NL ++D + + V +LDNVI Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLK 313 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 HT +A +S R+IGLG MG+ L IP+ S EAV + I A+ A+ Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKCRIPFDSEEAVRLTGIIFGGIKSAAVRAT 372 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 LA+ERG G G+ Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN++ +A+AP A A + G S S++P YV G VN +L +L+ L E Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGLDTE 450 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q QSLNL+ Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510 Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRS 905 + K L ++R AW G K YYLR+ Sbjct: 511 MGADKTNLSDVHRLAWKSGCKGLYYLRT 538 >gi|37526940|ref|NP_930284.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786373|emb|CAE15426.1| ribonucleoside-diphosphate reductase 1 alpha chain (ribonucleotide reductase 1) (B1 protein) (R1 protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 763 Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 185/673 (27%), Positives = 296/673 (43%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +V A GL++VS V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGHKERIDLDKIHRVVNWAADGLKNVSVSQVELRSQIQFYDGIKTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +S LI + P+Y + AR + LR++ ++ P H +Y + + Sbjct: 65 ASADLISGDAPDYQYLAARLAIFNLRKKAYGQ-FEPPSLYDHVSRMVKMGKYDKHLLADY 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 K E M +F + + RD F Y ++ L +Y + + G E Q + Sbjct: 124 SKEEF--EQMNEF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSGYPKETRLDYIRRFYDAASTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 DDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + EFE Y YE+ ++ + +++ AV L+ M+ Sbjct: 351 EEITLFSPSDVPGLYEAFFADQDEFERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ + Sbjct: 467 FNLGA-----IENLDELEELATLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L + Y+ A + ++ E I ++ + AS ELA+E+GA FK + + +G+ PID Sbjct: 522 YYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSKGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L N W+ L+ +K G+RNS ++ P+ T + I + I+P Sbjct: 582 T---YKKALDTLT-NEPLHYDWEALRNEIKQYGLRNSTLSSLMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 + +K++ G Sbjct: 638 PRGYVSIKASKDG 650 >gi|253989036|ref|YP_003040392.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780486|emb|CAQ83648.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Photorhabdus asymbiotica] Length = 763 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 212/802 (26%), Positives = 341/802 (42%), Gaps = 85/802 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +V A GL++VS V + YD + SD+ +I Sbjct: 5 LLVTKRDGHKERIDLDKIHRVVAWAADGLKNVSVSQVELRSQIQFYDSIKTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ E LY ++ R +E G Sbjct: 65 AAADLISGDAPDYQYLAARLAIFNLRKKAYG----------QFEPPALY-DHVSRMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLADYSKEEFEQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSSYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R +G+ I G IPF K Sbjct: 231 DDSLDSINATSSAIVKYVSQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + EFE Y YE+ ++ + +++ AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFTNQDEFERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D CN SP V V SNLC EI L N + E A+C L + Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL A + D+L AVR LD ++D + I AK+ R +G+G++ + Sbjct: 467 FNLGA-----IENLDELEELAILAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L Y+ A + ++ E I ++ + AS ELA+E+GA FK + + QG+ PID Sbjct: 522 YYLAKHGARYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L N W+ L+ +K G+RNS ++ P+ T + I + I+P Sbjct: 582 T---YKKTLDTLT-NEPLHYDWETLRSDIKQYGLRNSTLSSLMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + +K++ G V V E +R D ++ + +DG Sbjct: 638 PRGYISIKASKDGILRQV----VPEY-ERLKGDYELLWQMPGNDG--------------- 677 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGL 897 ++ QK+IDQ+ S N D PSGK ++ + + A+ G+ Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPARFPSGKVPMNQLLKDLLLAYKYGV 726 Query: 898 KTTYYLRSRSATSVEKSTLKGV 919 KT YY +R + L+ V Sbjct: 727 KTLYYHNTRDGAEDVQDDLEEV 748 >gi|167044534|gb|ABZ09208.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG6N3] Length = 890 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 170/642 (26%), Positives = 300/642 (46%), Gaps = 58/642 (9%) Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337 A LK F++++ +G L +F + +E+ + M+V+ L +K Sbjct: 193 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 252 Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 R E+Y L++S F+ ++PT+ N+G R QLS+CF+ +PDD+ GI + A++ Sbjct: 253 YADRISEYYELMTSQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIMKTTSDAALIF 312 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA +E Sbjct: 313 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 372 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513 WH D+E+F+ + G +++ W D + V G +TL SP + Sbjct: 373 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 422 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571 + GEI I +A +++ P + F D N + Sbjct: 423 --------------NSSAGEINAHHLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 462 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626 + G + ++N C E +L CNLGSI NL+ A+ Q FD+ + I Sbjct: 463 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYEFDWQRYEEIII 518 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY S E + + Sbjct: 519 KTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E ++++++ SV LA+ RG + + + +G P+ G + ++E + W Sbjct: 579 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 630 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L ++++ G+RN +APT T++ + S ++P++ ++ K G F N Sbjct: 631 DALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 690 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 LK+ +L+ + +++ + + GS I IPD ++ I TA +I + + S Q W Sbjct: 691 EQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWTDHLLAQSVWQDW 750 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I A + + + ++ S + + Y A MGLK R S Sbjct: 751 ISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGS 792 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 8/101 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A +I++ D + + +L +H S Sbjct: 19 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDKELAIKLSDAV-------LIKLTEHGFS 71 Query: 90 AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 +E IQD VE +L+ GH I + Y+LYR ER +R Sbjct: 72 VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 112 >gi|304414249|ref|ZP_07395617.1| ribonucleotide reductase alpha subunit [Candidatus Regiella insecticola LSR1] gi|304283463|gb|EFL91859.1| ribonucleotide reductase alpha subunit [Candidatus Regiella insecticola LSR1] Length = 762 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 214/799 (26%), Positives = 335/799 (41%), Gaps = 101/799 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ +V+ A GL +VS V ++ YDG+ +D+ +I Sbjct: 5 LLVTKRDGRKERINLDKIHRVVDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ ++ P H +Y + + Sbjct: 65 AAADLISTDAPDYQYLAARLAVFHLRKKAYGQ-FEPPPLFEHVSKMVAMKKYDQHLLADY 123 Query: 264 VKARLLH-ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A ES +D + RD F Y ++ L +Y + + G E Q Sbjct: 124 SAAEFAEMESFID-----------HWRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L +E R FYN +S+F TP + +G R P Q SSC L Sbjct: 173 YILVAACL-FSSYPRESRLDYVKRFYNAISTFKISLPTPIM--AGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I A G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINAASSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLLK 349 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLT 551 TLFSP +V L+D + EFE Y YE+ Q R + +I AV L+ M+ Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQTEFERLYMKYEQDQTIRQQ-----RIKAVDLFSLMMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG +I D CN SP V V SNLC EI L N + E A+C L Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTQPLNDINDETGEIALCTL 464 Query: 603 GSINLLAHFANNQFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 + NL A D+ L AVR LD ++D + I A+ + R +G+G Sbjct: 465 SAFNLGA--------IDRLEELEELATLAVRALDALLDYQDYPIAAARNGSLGRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPE----AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 ++ L + Y++ + A + + E I ++ + AS +LA+E+GA F + Sbjct: 517 VINLAYYLAKNGVGYSNADLKKNANSLTHRTFEAIQYYLLKASNDLAREKGACPWFDQTT 576 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + QG+ PID+ + DE+ N L W+ L++ +K G+RNS A+ P+ T + I Sbjct: 577 YAQGLLPIDT---YKKYLDEIC-NEPLHLDWEGLRQNIKQWGLRNSTLSALMPSETSSQI 632 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + I+P + +K++ G VV + + + LWD Sbjct: 633 SNATNGIEPPRGYVSIKASKDGILRQVVPEYERLKEHYQLLWD----------------- 675 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--- 891 IP++ + QK++DQA S N D +Q Sbjct: 676 --IPNNDGYLQLVGI-------------MQKFVDQAISANTNYDPTRFSDNKVPMKQLLK 720 Query: 892 ----AWLMGLKTTYYLRSR 906 A+ +G+KT YY +R Sbjct: 721 DLLTAYKLGIKTLYYHNTR 739 >gi|311278370|ref|YP_003940601.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] gi|308747565|gb|ADO47317.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] Length = 714 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 197/661 (29%), Positives = 304/661 (45%), Gaps = 82/661 (12%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 F F+ +LG Y Y L +G R P M VA+ LA + E A + + + Sbjct: 97 FQFQTFLGAWKFYTSYTLKTFDGKRYLEHFPDRVVM-VALTLAQGD---EALARQLTDEM 152 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 153 LSGRFQPATPTFLNCGKMQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 212 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 213 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDT 272 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-E 523 ++ D++ R ++ IPD+ + +NA LFSP D+ LYGK F +IA E Sbjct: 273 KRENADEKIRIKTLSLGVTIPDITFRLARENARMALFSP---YDVERLYGKAFGDIAVTE 329 Query: 524 NYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 YE+ + RK ISA ++ + + FE+G+P+I F+D N SP G ++ Sbjct: 330 MYEQLVADARV---RKTWISAREFFQTLAEIQFESGYPYIMFEDTVNRASPV--AGRINM 384 Query: 582 SNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC EI +NS+SE CNLGS+N +AH D T+ TAV Sbjct: 385 SNLCAEILQVNSASEFDENLDYARVGRDISCNLGSLN-IAH----TMDSPDFGRTVATAV 439 Query: 630 RVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D++ + + N AIGLG M L I Y SPEA+E + Sbjct: 440 RALTAVSDMSHIRAVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALEFTNLYFC 499 Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMN 739 I++HA++ S+ LA+ERG +++ F S + G + + ++ + + Sbjct: 500 AITWHALNTSMLLARERGQSFAGFAQSRYASGEYFAAYLEGDWQPKTQVVRTLFQRAGIT 559 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798 +R W +L+ V G+ N N AIAPT +I+ I + SI P + + K +G Sbjct: 560 LPTRDMWRQLRDAVMRYGIYNQNLQAIAPTGSISYINHATSSIHPVASKIEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N D+L ++ A++I P +I+ Sbjct: 620 VYYPAPFMTN------------------------------DNL-HLYQDAYDIGPEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + K +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++ Sbjct: 649 TYAEATKHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKTLYYIRLRQ-LALEGTEIE 707 Query: 918 G 918 G Sbjct: 708 G 708 >gi|49237335|ref|YP_031616.1| ribonucleoside diphosphate reductase alpha subunit barrel domain [Frog virus 3] gi|47060153|gb|AAT09697.1| ribonucleoside diphosphate reductase alpha subunit barrel domain [Frog virus 3] Length = 565 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 170/568 (29%), Positives = 251/568 (44%), Gaps = 98/568 (17%) Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F S+P L + +G+ P SCFL VPD + G+ E L+ GG+ W VRG Sbjct: 56 FGYSSPILTSVTGSGLP--ISCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 A KS G IPFL + A QG R+G+ AY+ H D+ EF+ +R T Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 GD R+ +++ I D FM+ V + W L P + H Sbjct: 167 GDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKSGAVAH------------------ 208 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586 +SA LW ++L F TG P++ F D N + + G+ + SNLC Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDTANRGLHPALKRKGLKIRGSNLCN 259 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638 EI L ++++ TAVC L S+NL ++D + + V +LDNVI Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLK 313 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 HT +A +S R+IGLG MG+ L IP+ S EAV + I A+ A+ Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRGIKSAAVRAT 372 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 LA+ERG G G+ Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN++ +A+AP A A + G S S++P YV G VN +L +L+ L E Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGLDTE 450 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q QSLNL+ Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510 Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRS 905 + K L ++R AW G K YYLR+ Sbjct: 511 IGADKTNLSDVHRLAWKSGCKGLYYLRT 538 >gi|240849860|ref|YP_002971248.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella grahamii as4aup] gi|240266983|gb|ACS50571.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella grahamii as4aup] Length = 716 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 195/676 (28%), Positives = 303/676 (44%), Gaps = 74/676 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG ++L E + DF + Y F F +LG Y Y L +G R +E Sbjct: 69 IEEGYYEKVLFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + A F + + + F +TPT N+G + +L SCFL Sbjct: 128 YEDRVCLVALYLA---QGNKALAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ D+ Sbjct: 185 VEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFS D+ + GK F +I+ E+Y D +I+ +KISA ++ + + Sbjct: 305 NEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKISARVFFQTLAEIQ 360 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601 FE+G+P+I F+D N +P G + SNLC+EI S + E CN Sbjct: 361 FESGYPYILFEDTANRSNPI--AGRISMSNLCSEILQVSEASELETDLTYRTIGSDISCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + F T+ +AVR L V D+ N + K N AIGLG Sbjct: 419 LGSMNIAKAMESPDF-----GQTVESAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y SPEA++ + +++HAI AS +A+ER +S F+ S + G Sbjct: 474 MNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRASNLIARERQEMFSGFEKSAYADG 533 Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I A V++ A N + W ELKK V G+ N N A+ PT + Sbjct: 534 RFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLRSR 906 AW G+K+ YY+R R Sbjct: 684 YAWKKGIKSIYYVRLR 699 >gi|254505919|ref|ZP_05118064.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] gi|219551142|gb|EED28122.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] Length = 710 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 187/671 (27%), Positives = 309/671 (46%), Gaps = 70/671 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332 D + + L D Y+ F F +LG + Y L + + + F RV M L L Sbjct: 77 DREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGKRYL-ERFEDRVVMTALTLAR 135 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 +K A++ + S F +TPT NSG + +L SCFL + D++ I A+ + Sbjct: 136 GDK-AFALDLMQEIISQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSL 194 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L++ GG+ + +R GA I G +S GV+P +K+ D+ NQ G R+GA Y Sbjct: 195 QLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 254 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ +FLD ++ D++ R ++ IPD+ ++ QN LFSP +V ++ Sbjct: 255 LNAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVY 314 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E ++ E Y D I+ KISA L++ + + FE+G+P++ F+D N + Sbjct: 315 GVPFSEISVS-EKYYEMVDDPRIRK-SKISARGLFQTLAEIQFESGYPYLMFEDTVNAAN 372 Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619 P + G ++ SNLC+EI +N +S CNLGSIN+ D Sbjct: 373 PIK--GRINMSNLCSEILQVNDASHFNDDLSYAHLGRDISCNLGSINIA-----KALDGG 425 Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 LA T+ ++R L+ V +++ ++ ++ N AIGLG M L I Y S E Sbjct: 426 HLAHTVEVSIRALNAVSEMSAIDSVPSIRRGNDESHAIGLGQMNLHGFLAREQIHYDSEE 485 Query: 679 AVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLL 729 AV+ +H ++AS +LAQE+ + F+ S + G F + G++ Sbjct: 486 AVDFTRAYFATTLYHCLTASNKLAQEKQQVFVGFEHSQYATGEFFAKYLQQDYSPRTGIV 545 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 A + + L M S W +L+ +V G+ N N AI PT +I+ I + SI P + Sbjct: 546 AALFERLDMQVPSIDDWQQLQSKVMESGLYNRNLQAIPPTGSISYINDATASIHPVTAKV 605 Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K G +L N+ N+E D A Sbjct: 606 EIRKEGKIGRVYFPAPYLSND-----------------------NLEYFKD--------A 634 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 ++I P +I+ + + +DQ SL L+ DE + + ++ AW +KT YY+R R Sbjct: 635 YDIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRDINKAQIYAWKKKIKTLYYIRMRQ 694 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 695 -KALEGTQVEG 704 >gi|259907949|ref|YP_002648305.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224963571|emb|CAX55061.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] Length = 761 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 190/677 (28%), Positives = 295/677 (43%), Gaps = 55/677 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A LQ+VS V ++ Y+G+ SD+ +I Sbjct: 5 LLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259 S+ LI ++ P+Y + AR + LR++ ++ P Q EM P Y Sbjct: 65 SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 E E M F + + RD F Y ++ L +Y + ++G E Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169 Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G G IPF K Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH +VE L L+ N G + R M+ + + +R+ Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+D + EFE Y YE+ I+ R + AV L+ M+ Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFADQNEFERLYTQYEKD---DSIRKLR-VKAVDLFSLMM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A + D L AVR LD ++D + I AK+ R +G+G++ Sbjct: 464 LSAFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 F L + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ Sbjct: 519 NFAYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578 Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PID+ +D A+ N L W+ L++ VK G+RNS A+ P+ T + I + Sbjct: 579 PIDTYK-----KDLDAICNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSG 797 I+P ++ +K++ G Sbjct: 634 GIEPPRGHISIKASKDG 650 >gi|163867488|ref|YP_001608687.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella tribocorum CIP 105476] gi|161017134|emb|CAK00692.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella tribocorum CIP 105476] Length = 716 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 194/676 (28%), Positives = 302/676 (44%), Gaps = 74/676 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + L E + DF + Y F F +LG Y Y L +G R +E Sbjct: 69 IEEGYYEKALFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + V++ LA + A F + + + F +TPT N+G + +L SCFL Sbjct: 128 YEDRICLVSLYLA---QGNKALAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I A+ L+K GG+ T +R GA I +S GV+P +K+ D+ Sbjct: 185 VEDNMESIGRAVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFS D+ + GK F +I+ E+Y D +I+ +KISA ++ + + Sbjct: 305 NEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKISARVFFQTLAEIQ 360 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601 FE+G+P+I F+D N +P G + SNLC+EI S + E CN Sbjct: 361 FESGYPYILFEDTANRSNPI--AGRISMSNLCSEILQVSEASELETDLTYRTIGSDISCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + F T+ +AVR L V D+ N + K N AIGLG Sbjct: 419 LGSMNIAKAMESPDF-----GQTVESAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y SPEA++ + +++HAI S +A+ER ++ F+ S + G Sbjct: 474 MNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRVSNLIARERQEMFAGFEKSAYADG 533 Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I A V++ A N + W ELKKRV G+ N N A+ PT + Sbjct: 534 RFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKRVIKYGLYNRNLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLRSR 906 AW G+K+ YY+R R Sbjct: 684 YAWKKGIKSIYYVRLR 699 >gi|319779631|ref|YP_004130544.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Taylorella equigenitalis MCE9] gi|317109655|gb|ADU92401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Taylorella equigenitalis MCE9] Length = 758 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 177/674 (26%), Positives = 302/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ DG + +++ +++ A +GL +VS+ V + YDG+ D++ +I Sbjct: 6 ISVIKRDGRSEPLDLEKIHRVIDWAANGLDNVSTSQVELNSQIQFYDGIQTQDIQETIIK 65 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + +R++ H LY ++ I++G Sbjct: 66 AAADLISTDTPDYQYLAARLAMINIRKKAYG----------DHVPPHLY-DHVSSLIQKG 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 V + + + + + L ++RD+ F Y+ + + +Y + ++G E PQ + Sbjct: 115 VYDKNIISDYSKDEFEEMNSYLVHDRDWDFSYVAVMQMQGKYLVQNRVSGEIYETPQFLY 174 Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L K + + K EFY+ S+F TP + +G R P Q SSC L Sbjct: 175 VLVAACLFAKYPKDVRLKYIREFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 232 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R G+ I G + G IPF K Sbjct: 233 DSLDSINATSSAIVRYVSQRAGIGINAGRIRAEGSPIRGGEARHTGCIPFYKHFQTAVKC 292 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNRLMYERLVKGQ 352 Query: 498 GWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + ++ FE Y YE+ + R++ + L+ ++ Sbjct: 353 NITLFSPSDVPGLYDAFFEDQDTFEQLYTKYEQDPSIRK----RQVKSNDLFSMLMQERA 408 Query: 555 ETGHPWITFKDPCNIRS---PQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN P++ + SNLC EITL N E A+C L Sbjct: 409 STGRIYIQNVDHCNTHGAFDPKK--APIRQSNLCLEITLPTKPLDDINDPKGEIALCTLS 466 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + D+L VR LD ++D + I+ A+ S R++G+G++ F Sbjct: 467 AFNLGAIDS-----LDELEHLADLVVRALDALLDYQDYPIKAAQISTMNRRSLGVGVINF 521 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ I ++ E I ++ + AS+ LA+E G +F + + QGV PI Sbjct: 522 AYYLAKNGAKYSDGSGNAITHQTFEAIQYYLLKASMNLAKEFGPCPAFDETKYSQGVLPI 581 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D+ RL WD L+ + G+RNS A+ P+ T + I + I+ Sbjct: 582 DT---YKKSVDDFC-KEPLRLDWDTLRVDIVKYGLRNSTLTALMPSETSSQISNATNGIE 637 Query: 784 PSYQNLYVKSNMSG 797 P + VK + G Sbjct: 638 PPRGLITVKQSKDG 651 >gi|241206479|ref|YP_002977575.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860369|gb|ACS58036.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 716 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 198/664 (29%), Positives = 303/664 (45%), Gaps = 81/664 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y + F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 84 FNFVRDLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGD 143 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 144 ---ESLARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 200 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 201 QLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 260 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ Sbjct: 261 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSP---YDVE 317 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F EI+ E Y AD I +KI A ++ + + FE+G+P+I F+D N Sbjct: 318 RVYGVPFTEISVTEKYREMADDARISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNR 376 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617 +P G V SNLC+EI S + E CNLGS+N+ A A + D Sbjct: 377 ANPI--AGRVSMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDSVD 432 Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + K TI T++R L V D++ ++ +K N AIGLG M L I Y S Sbjct: 433 FGK---TIETSIRALSAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGS 489 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 E V+ + ++++AI AS LA ERGA + F+ S + G + L E E Sbjct: 490 EEGVDFTNIYFYTVTYYAIRASNLLAVERGASFKGFENSKYASGDYFDKYTDRLWEPATE 549 Query: 736 L--AMNRTS--RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 A+ TS +P W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 550 RVKALFETSGIHIPTQEDWVALKKAVMASGLYNQNLQAVPPTGSISYINHSTSSIHP--- 606 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKK 843 +V++++ R +G IG + + +D Sbjct: 607 ------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLD 635 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY Sbjct: 636 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKTIYY 695 Query: 903 LRSR 906 +R R Sbjct: 696 IRLR 699 >gi|283835590|ref|ZP_06355331.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] gi|291068802|gb|EFE06911.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] Length = 705 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 199/660 (30%), Positives = 311/660 (47%), Gaps = 80/660 (12%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFEDRVTMVALTLAQGD-ETLAMQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G R +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ LYGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDVAFRLAKENAQMALFSP---YDVERLYGKPFGDIAVSER 321 Query: 525 Y-ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 Y E AD +V +K I+A ++++ + FE+G+P+I F+D N +P G ++ S Sbjct: 322 YDELLADE---RVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNRANPI--AGRINMS 376 Query: 583 NLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI +NS+S CNLGS+N+ AH D T+ TAVR Sbjct: 377 NLCSEILQVNSASTYDDALGYTQIGHDISCNLGSLNI-AH----TMDSPDFGRTVETAVR 431 Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D++ H++ + N AIGLG M L I Y SPE ++ + Sbjct: 432 GLTAVSDMSHIHSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYT 491 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNR 740 I++HA++ S++LA+ERG ++ F S + G + D A+VR A + Sbjct: 492 ITWHALNTSMKLARERGKTFAGFSQSRYASGEYFSQYLQGDWQPKTAKVRALFAASGITL 551 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 +R W +L++ V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 552 PTREMWAQLREDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKIGRV 611 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 F+ NE + A+ D A+EI P +I++ Sbjct: 612 YYPAPFMTNE-------NLALYQD------------------------AYEIGPQKIIDT 640 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 641 YAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699 >gi|322421033|ref|YP_004200256.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] gi|320127420|gb|ADW14980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] Length = 565 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 169/590 (28%), Positives = 266/590 (45%), Gaps = 83/590 (14%) Query: 299 QILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFH 350 ++L RY L + G IE P+ F R+A +A E E+R F +LL+ Sbjct: 9 KVLQARYLLKNEEGEVIESPEEMFRRLARSIAAVEKSYGADPGLWEER---FLDLLTGLR 65 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++P + N+G QL++CF+ V D + GIF L+ A++ + GG G ++ +R Sbjct: 66 FLPNSPAIMNAGKPAGQLAACFVLPVEDSMSGIFETLKNAALILQSGGGTGFSFSRLRPR 125 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G + G + F+K+ N + QGG R+GA L H D+ EF+ ++K G Sbjct: 126 ADLVRSTGGIASGPVSFMKIYNTATDIIKQGGARRGANMGILRVDHPDIVEFIRVKKGAG 185 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + + N + + DLFM+ ++++ + L +P + A Sbjct: 186 E----LANFNISVAVTDLFMEELSRDGSYDLVNP-------------------RSGKVAG 222 Query: 531 RGEIK-VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 R K VF +I A A W ETG P + F D N +P +G S+N C E Sbjct: 223 RARAKEVFDEIVASA-W--------ETGDPGMIFIDRINRDNPTPGIGSFESTNPCGEQP 273 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L C LGS+NL + + + D + L + AVR LD+ ID N + + + Sbjct: 274 LLPYE----ACVLGSLNLARYVGSGELDLESLGGDVALAVRFLDDTIDANRYPLPAIEAM 329 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 + +R IGLG+MG+ L L IPY P A +A M+FI A +AS LA+ERG + Sbjct: 330 HKRNRKIGLGVMGWADLLIDLGIPYNDPRAFALAGSVMQFIRDRARNASAALAEERGVFP 389 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F GS++D P RV RN+ IAPT Sbjct: 390 NFPGSVYDAPGMP-----------------------------RV-----RNATTTTIAPT 415 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 T+A I S I+P + Y + + G+ N + K+ + E ++ +K G Sbjct: 416 GTLATIADCSSGIEPLFALAYRRLILEGELVETNRHFIEIAKREGFYSEELLEGVKVT-G 474 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 ++ E +P+ + + TA EI P IE Q++ D A S + L E Sbjct: 475 NLQGREEVPERYRALFRTALEIPPEDHIEMQRAFQRFTDNAVSKTVNLPE 524 >gi|116253996|ref|YP_769834.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115258644|emb|CAK09748.1| putative ribonucleoside-diphosphate reductase alpha subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 707 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 193/667 (28%), Positives = 302/667 (45%), Gaps = 87/667 (13%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y + F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 75 FNFVRDLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGD 134 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + VE + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 135 EALARDMVE---EIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 191 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 192 QLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 251 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ Sbjct: 252 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVE 308 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F EI+ E Y AD I +KI A ++ + + FE+G+P+I F+D N Sbjct: 309 RVYGVPFTEISVTEKYREMADDARISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNR 367 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617 +P G + SNLC+EI S + E CNLGS+N+ A A + D Sbjct: 368 ANPI--AGRISMSNLCSEILQVSEASEYHDDLSYKHLGKDISCNLGSLNIAA--AMDSAD 423 Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + K TI T++R L V D++ ++ +K N AIGLG M L I Y S Sbjct: 424 FGK---TIETSIRALTAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGS 480 Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PID 724 E V+ + +++HAI AS LA ERG ++ F+ S + G + + Sbjct: 481 EEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYASGEYFDKYTDRLWEPATE 540 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + L E D ++ ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 541 KVKALFETAD---IHIPTQEDWAALKKLVMASGLYNQNLQAVPPTGSISYINHSTSSIHP 597 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDD 840 +V++++ R +G IG + + +D Sbjct: 598 ---------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTND 623 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 + A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 624 NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKT 683 Query: 900 TYYLRSR 906 YY+R R Sbjct: 684 IYYIRLR 690 >gi|152997007|ref|YP_001341842.1| ribonucleotide-diphosphate reductase subunit alpha [Marinomonas sp. MWYL1] gi|150837931|gb|ABR71907.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas sp. MWYL1] Length = 754 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 208/799 (26%), Positives = 339/799 (42%), Gaps = 105/799 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +GT + N +++ ++ A GL +VS V + ++G+ +D+ LI Sbjct: 4 LTVTKRNGTTENINLEKIHKVIAWAAEGLDNVSVSQVELKARIQFFEGIRTTDIHETLIK 63 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ P H + +E+ Sbjct: 64 SAADLISESTPDYQYLAARLAIFHLRKKAFGD-FEPPHLYKHVK----------NLVEQK 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + D L L + RD F Y ++ L +Y + + G+ E PQ + Sbjct: 113 RYDAQLLEKYTEEDFNELNTFLDHSRDMDFSYAAVKQLEGKYLVQNRVTGAIYESPQFIY 172 Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + +KE+ + FY+ +S F TP + SG R P Q SSC L Sbjct: 173 ILVAACLFAEYDKKERLNLIRRFYDAVSKFKISLPTPIM--SGIRTPTRQFSSCVLIECG 230 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 231 DSLDSINATSSAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 290 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ + Sbjct: 291 CSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKGG 350 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTM 552 TLFSP +V L+D + +EF+ Y YE+ RK I A L+ + Sbjct: 351 NITLFSPSDVPGLYDAFFADQEEFDRLYTMYEQDPS------IRKQTIKATELFTLFASE 404 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN SP V V SNLC EI L + E A+C L Sbjct: 405 RASTGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLNSIDDKEGEIALCTLS 464 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A ++ L VR LD+++D + I A+++ R +G+G++ + Sbjct: 465 AFNLGALENLDE-----LEELAELIVRALDSLLDYQNYPIPAAQRATELRRTLGVGVINY 519 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A E+ ++ E I + + AS +LA+E G +F + + +G+ PI Sbjct: 520 AYYLAKNGVKYSDGSANELTHKTFEAIQYFLLKASNKLAKEFGPCLAFNETTYSKGILPI 579 Query: 724 DSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS + V +EL + W+ L+ + T G+RNS A+ P+ T + I + Sbjct: 580 DSYKKEIDNIVSNELFYD------WETLRNDIVTHGLRNSTLTALMPSETSSQISNATNG 633 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + +K++ G LKQ + ER+ ++ Sbjct: 634 IEPPRGFVSIKASKDGI-----------LKQ-----------------VVPEFERLKEN- 664 Query: 842 KKIHATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR 890 +E+ +W I S QK++DQA S N D E + I + Sbjct: 665 -------YEL--LWTIPSNDGYLQLVGIMQKFVDQAISANTNYDPQKFESQKVPMKVILK 715 Query: 891 Q---AWLMGLKTTYYLRSR 906 A+ +G+KT YY +R Sbjct: 716 DLLTAYKLGVKTLYYHNTR 734 >gi|121602719|ref|YP_988675.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella bacilliformis KC583] gi|120614896|gb|ABM45497.1| ribonucleoside-diphosphate reductase, alpha subunit [Bartonella bacilliformis KC583] Length = 716 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 196/686 (28%), Positives = 315/686 (45%), Gaps = 78/686 (11%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + L E + DF + Y F F +LG Y Y L +G+R +E Sbjct: 69 IEEGYYEKALFE-LYDFSFIKRLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGTRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + + V+ + + F +TPT N+G + +L SCFL Sbjct: 128 YEDRVCLVALYLAQGNKDFAESCVD---EIMTGRFQPATPTFLNAGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ D+ Sbjct: 185 VEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFSP D+ + GK F +I+ E+Y D +I+ +KISA ++ + + Sbjct: 305 NEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNPKIRK-KKISARVFFQTLAEIQ 360 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-ETAV----------CN 601 FE+G+P+I F+D N +P G ++ SNLC+EI +N +SE ET + CN Sbjct: 361 FESGYPYILFEDTANRANPV--AGRINMSNLCSEILQINEASELETDLGYRTVGSDISCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ ++ F T+ TAVR L V D+ N + K N AIGLG Sbjct: 419 LGSMNIAKAMDSSDF-----GRTVETAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y SPEA++ + +++HA+ AS +A+ER ++ F+ S + G Sbjct: 474 MNLHGFLAREKIYYGSPEAIDFTNIYFYTVTYHALRASNLIARERQEKFAGFEKSAYADG 533 Query: 720 VFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I L+ E+ + ++ W +LK+ + G+ N N A+ PT + Sbjct: 534 CFFEKYIKREWKPQFLLVQEIFARNNILIPTQGDWKKLKELIAKYGLYNRNLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLRSR----SATSVE 912 AW G+K+ YY+R R S T VE Sbjct: 684 YAWKKGIKSIYYIRLRQKALSGTEVE 709 >gi|110642800|ref|YP_670530.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 536] gi|110344392|gb|ABG70629.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli 536] Length = 701 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 192/658 (29%), Positives = 306/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A + + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLAAQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A E Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISER 317 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 429 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + H++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 430 TAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 549 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638 Query: 862 RRQKWIDQAQSLN-LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+LD + + +D AW G+KT YY+R R ++E + ++G Sbjct: 639 ETTRHVDQGLSLTLLFLDTATTRDIDKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|322514735|ref|ZP_08067761.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] gi|322119330|gb|EFX91446.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] Length = 756 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 211/800 (26%), Positives = 343/800 (42%), Gaps = 107/800 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + G F+ ++ ++ A GLQ+VS V + Y G+ +D+ +I Sbjct: 5 LMVTKRSGQQEPFDLDKIHRVITWAAEGLQNVSLSQVELSAHIQFYQGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY----FCRY 259 ++ LI E P+Y + AR + LR++ + P TH + +Y Y Sbjct: 65 AAADLISTETPDYQYLAARLAMFHLRKKAYGD-FTPPHLFTHIKKLVALGKYDQALLTDY 123 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 E+ + +L++E ++ + RD F Y ++ L +Y + + G E Sbjct: 124 TEQ--EWQLMNEFLV------------HSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169 Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L K + + FY+ SSF TP + SG R P Q SSC L Sbjct: 170 QFLYLLVAACLFSKYPKATRLDYVKRFYDATSSFKISLPTPIM--SGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 228 IECGDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKH 284 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA Y WH++VE L L+ N G + R M+ + L Sbjct: 285 FQSAVKSCSQGGVRGGAATVYYPLWHLEVESLLVLKNNRGIEDNRCRHMDYGVQLNKLMY 344 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547 +R+ + TLFSP +V L++ + E FE Y YE+ + R + AV L+ Sbjct: 345 QRLIKGGEITLFSPSDVDGLYEAFFAEQDKFEQLYLQYEQDPTIRK----RSVKAVELFS 400 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598 ++ TG +I D CN SP V + SNLC EI L N + E A Sbjct: 401 LLMQERASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIA 460 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +C L + NL N +++ LA + VR LD ++D + +E AK + R++G+ Sbjct: 461 LCTLSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVEAAKHAALARRSLGI 515 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G++ + L + Y+ A + + E + ++ + AS+ LA+E+GA F + + Q Sbjct: 516 GVINYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQ 575 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 G+ PID+ + EL + ++ P W+ L+ ++ G+RNS ++ P+ T + Sbjct: 576 GILPIDN------YKKEL--DNLTQEPLHYDWESLRAEIQQFGLRNSTLSSLMPSETSSQ 627 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + I+P + VK++ G VV + + LWD I D+ + +G Sbjct: 628 ISNATNGIEPPRGYVSVKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGI 684 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLD 886 + QK+IDQA S N D + K+L Sbjct: 685 M-----------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLL 715 Query: 887 FIYRQAWLMGLKTTYYLRSR 906 A+ GLKT YY +R Sbjct: 716 ADLLTAYKYGLKTLYYQNTR 735 >gi|312162815|ref|YP_003933800.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1] gi|308096448|gb|ADO13788.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1] Length = 1048 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 188/661 (28%), Positives = 302/661 (45%), Gaps = 66/661 (9%) Query: 290 DFAFEYLGLQ--ILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEK-------RA 339 ++A + GLQ + Y+ ++L G+ R+E + R+A LA E + R Sbjct: 397 EYALKNRGLQSALKYEEFYLRPWGNGRLESVSQMYTRIAGALATGAREIPEIGTVALGRT 456 Query: 340 VE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENA 391 E F++ L S + STP + G R SSC+L D G+ A+ N Sbjct: 457 GEWIDLFAYFFDALVSHAIVPSTPAMLYLGGRQRYTSSCYLVNPQRTDSAGVIDAITHNV 516 Query: 392 --MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 +LA++ G +G I NG S V+P LK+ + A N G R VC Sbjct: 517 GDILARHGG-----------IGLSIQSFNGGSS-VMPALKLLDSLVAAHNAGSHRPTGVC 564 Query: 450 AYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLF 502 YLE WH DV L +R G++ RR ++ +A W+PDLF KR+ + WTLF Sbjct: 565 VYLEPWHTDVMAVLRMRGLLAGEEARRCDNIFSAMWMPDLFFKRLIRYMEGERGVMWTLF 624 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 S L +G EFE YE E ++ + A A+ R + TG P++ Sbjct: 625 DGAAGSALSAHHGAEFERLYEKMEEAGGSALTRLPIQDLAFAIVRSAAS----TGSPFVM 680 Query: 563 FKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 FKD CN G + SNLCTEI + + + VCNL S+NL + F +++L Sbjct: 681 FKDACNRHYLYDTQGSAISCSNLCTEIVHPADARSSGVCNLASVNLAECVEDGAFSFERL 740 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 +R V +++ +ID ++ ++ + R++G+G+ G +A L + +SPE E Sbjct: 741 RRAVRACVLMVNVMIDTTRTPNQRCQRGHDRLRSMGIGMQGLHTACLRLGLDMSSPEFRE 800 Query: 682 IADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E E + A+ AS +L ++ FK S++ +G F + A R + + Sbjct: 801 LNAEIAEVMLLAAMQASNDLCVAGLPPFADFKRSVYSEGRFHWEG---FAHARPKHSDE- 856 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W L++RV G+RNS +A+ PT + + + S+ P + N++ K +G+ T Sbjct: 857 -----WARLRQRVVRHGLRNSQFIALMPTVSSSQVSESSEGFAPVFTNMFSKVGRAGE-T 910 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER-----IPDDLKKIHATAFEIDPMW 855 + + L+ E A+ L + + + R PD + TAFE D Sbjct: 911 LRPNLLLLEAVHEAFGGAALERALDRLEDAQWCVARAFPCLAPDHPLRRFKTAFEYDQTL 970 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 LI+ + R ++D +QS+ LY+ E S L + A+ GLKT YY + R AT Sbjct: 971 LIDLCADRAPYVDHSQSMTLYVTEASDGTLPASALTRLLVHAYKRGLKTGMYYCKVRKAT 1030 Query: 910 S 910 + Sbjct: 1031 N 1031 >gi|310768142|gb|ADP13092.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia sp. Ejp617] Length = 761 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 189/677 (27%), Positives = 295/677 (43%), Gaps = 55/677 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A LQ+VS V ++ Y+G+ SD+ +I Sbjct: 5 LLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259 S+ LI ++ P+Y + AR + LR++ ++ P Q EM P Y Sbjct: 65 SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317 E E M F + + RD F Y ++ L +Y + ++G E Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169 Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 Q ++ VA L + FY+ +S+F TP + SG R P Q SSC L Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G G IPF K Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH +VE L L+ N G + R M+ + + +R+ Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+D + EFE Y YE+ I+ R + A+ L+ M+ Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFADQNEFERLYTQYEKD---DSIRKLR-VKAIDLFSLMM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP + V SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A + D L AVR LD ++D + I AK+ R +G+G++ Sbjct: 464 LSAFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 F L + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ Sbjct: 519 NFAYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578 Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PID+ +D A+ N L W+ L++ VK G+RNS A+ P+ T + I + Sbjct: 579 PIDTYK-----KDLDAICNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATN 633 Query: 781 SIDPSYQNLYVKSNMSG 797 I+P ++ +K++ G Sbjct: 634 GIEPPRGHISIKASKDG 650 >gi|326204958|ref|ZP_08194810.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium papyrosolvens DSM 2782] gi|325984887|gb|EGD45731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium papyrosolvens DSM 2782] Length = 795 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 173/591 (29%), Positives = 279/591 (47%), Gaps = 83/591 (14%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EKEKRAVE--FYNLLSSFH 350 +++L RY NG+ +E F RVA +A + EK A+E FY+++++ Sbjct: 8 VKVLEKRYLEKDENGNLLEDCDGMFRRVAKAIASADAAYTDEKGLAAIEQEFYDMMANLE 67 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + GIF +++ A++ K GG G ++ +R Sbjct: 68 FLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFSFSRLRAK 127 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G+ ++ T G + G I F+KV N AV QGG R+GA L H D+ EF+ + Sbjct: 128 GSAVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFISCKS--- 184 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQA 529 D + N + I + FMK V N + L P + L KE F+I E Sbjct: 185 -DNSEITNFNLSVGITEDFMKAVEHNLEYELLDPKTKEPVAKLNAKEVFDIIVE------ 237 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 M ++ G P I F D N + +G + S+N C E Sbjct: 238 ----------------------MAWKNGEPGIIFLDRLNRDNVTPKLGEIESTNPCGEQP 275 Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 L CNLGSINL + ++ D++KL +T+R AVR LDNVI++N + + + Sbjct: 276 LLPYE----ACNLGSINLYNMMDDSHKGLDFEKLENTVRKAVRFLDNVIEVNKYPLPEID 331 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K R IGLG+MG+ L L + Y S A+++AD+ M FIS A+ AS LA+ +G Sbjct: 332 KMTRGTRKIGLGVMGWADTLCALGLAYNSQAAIDLADKVMSFISDIAMKASQNLAELKGV 391 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + ++ S++DQ K I +RN+ IA Sbjct: 392 FPFYEDSIYDQ-----------------------------------KGIKVRNATTTTIA 416 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT T++ I GVS I+P + Y+++ M + + VN + + E ++ + Sbjct: 417 PTGTLSLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKGAALSGNFYSEELMKKIA- 475 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 G++ N+ +P +++I TA ++ P W ++ + Q+ D A S + L Sbjct: 476 RVGTVKNMNEVPVQVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNL 526 >gi|49475006|ref|YP_033047.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella henselae str. Houston-1] gi|49237811|emb|CAF27006.1| Ribonucleotide reductase alpha-chain [Bartonella henselae str. Houston-1] Length = 716 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 195/676 (28%), Positives = 303/676 (44%), Gaps = 74/676 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + L E + DF + Y F F +LG Y Y L +G R +E Sbjct: 69 IEEGYYEKALFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + A F + + + F +TPT N+G + +L SCFL Sbjct: 128 YEDRICLVALYLA---QGNKALAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ D+ Sbjct: 185 VEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFS D+ + GK F +I+ E+Y D +I+ +KISA ++ + + Sbjct: 305 NEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKISARVFFQTLAEIQ 360 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCN 601 FE+G+P+I F+D N +P G ++ SNLC+EI +N +SE A CN Sbjct: 361 FESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNEASELEADLTYRTVGSDISCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ D D T+ AVR L V D+ N + K N AIGLG Sbjct: 419 LGSMNIA-----KAMDSDDFGRTVEAAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L I Y SPEA++ + +++HAI S +A+ER + F+ S + G Sbjct: 474 MNLHGFLAREQIYYGSPEAIDFTNIYFYIVAYHAIRVSNLIARERQKMFVGFEKSAYADG 533 Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I + V++ A N + W ELKK V G+ N N A+ PT + Sbjct: 534 SFFAKYIEQEWKPQFSLVQELFARNNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 630 DNTNL------DFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLRSR 906 AW G+K+ YY+R R Sbjct: 684 YAWKKGIKSIYYVRLR 699 >gi|218709885|ref|YP_002417506.1| ribonucleotide reductase r1 chain [Vibrio splendidus LGP32] gi|218322904|emb|CAV19081.1| ribonucleotide reductase R1 chain [Vibrio splendidus LGP32] Length = 710 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 172/593 (29%), Positives = 277/593 (46%), Gaps = 66/593 (11%) Query: 351 FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT NSG + +L SCFL + D++ I A+ + L++ GG+ T +R Sbjct: 153 FQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLTNLRE 212 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G +S GV+P +K+ D+ NQ G R+GA YL H D+ +FLD ++ Sbjct: 213 QGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHPDIMQFLDTKREN 272 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD+ ++ QN LFSP +V ++ + E + E Y Sbjct: 273 ADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVYGVPFSEISVT-EKYHEMV 331 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 D I+ K+SA L++ + + FE+G+P+I F+D N +P Q G V+ SNLC+EI Sbjct: 332 DDPRIRK-GKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ--GRVNMSNLCSEIL 388 Query: 589 TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N +S CNLGS+N+ D +L+ T+ TA+R L+ V + Sbjct: 389 QVNEASNYDDDLNYSHVGRDISCNLGSVNIA-----KALDGGQLSQTVDTAIRALNAVSE 443 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 ++ +++ +K N AIGLG M L I Y SPEA++ + +H + Sbjct: 444 MSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFTSSYFACVLYHCLV 503 Query: 697 ASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747 AS +LAQE + + F+ S + G F + + ++ + SRL W Sbjct: 504 ASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFSRLDIRIPTVSEWS 563 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFL 806 ELK+ V + G+ N AI PT +I+ I + SI P + + K G +L Sbjct: 564 ELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKEGKIGRVYFPAPYL 623 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 N N+E D AF I P +I+ + + Sbjct: 624 NN-----------------------SNLEYFRD--------AFSIGPKAIIDVYAAATEH 652 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +DQ SL L+ DE + + ++ AW +KT YY+R R ++E + ++G Sbjct: 653 VDQGLSLTLFFDDEVTTRGINKAQIYAWKKKIKTLYYIRMRQ-KALEGTQVEG 704 >gi|148244628|ref|YP_001219322.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Vesicomyosocius okutanii HA] gi|146326455|dbj|BAF61598.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus Vesicomyosocius okutanii HA] Length = 758 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 203/806 (25%), Positives = 348/806 (43%), Gaps = 103/806 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ +G S + +++ +V A L+ VS V +DG+ D+ +I Sbjct: 5 IKVTKRNGQQESIDMEKIHRVVHWASQDLKSVSVSQVEINAQLAFFDGIKTEDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI + P+Y + AR + LR++ + P + E+ + + G Sbjct: 65 SAADLISTDIPDYQYLAARLSIFHLRKKAFKSFTPPP-----------FFEHIKKITDLG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + + + ++ L + + + RD F Y+ ++ L +Y + + G E PQ + Sbjct: 114 IYDKDILNKYLKEEIEILGSYIDHWRDMNFSYVAVKQLEGKYLVQNRVTGEIYESPQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 M V M L +E E KR FY+ +S F TP + +G R P Q SSC L Sbjct: 174 MLVGMCL-FQEYEVSKRMNTVKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLIET 230 Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 DDL I ++ KY G+G + +R +G+ I G G IPF K + Sbjct: 231 DDDLDSISATA---GVIVKYISQRAGIGINGGKIRAIGSPIRGGEATHTGCIPFYKHFHT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++VE L L+ NTG D R ++ L +R Sbjct: 288 AVKSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRF 347 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRK 548 ++ TLFSP + DL++ + +EF+ Y YE+ + RK I A L+ K Sbjct: 348 LKDGDITLFSPHDTPDLYNAFFADQEEFKRLYHKYEQNT------LIRKHTIKARELFSK 401 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 + TG ++ D CN S + SNLC EITL E A+ Sbjct: 402 FIQERANTGRIYLQNVDHCNTHSAFNAKQAPIKQSNLCMEITLPTKPLYSIQDEQGEIAL 461 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 C L ++NL A + N+ L + VR LD ++D + I+ A+ ++ R +G+G Sbjct: 462 CTLSAVNLGALDSLNE-----LETLTDIIVRSLDCLLDYQDYPIKAAELASKNRRTLGIG 516 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + L Y+ ++ + E + ++++ AS LA+E GA F + + QG Sbjct: 517 VTNLAYYLAKNGAKYSDGSGNQLIHTTFEALQYYSLKASNTLAKELGACPLFFQTQYSQG 576 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + PIDS + + + + WD L++ + + G+RNS A+ P + + I + Sbjct: 577 IMPIDSYKKDIDAFCDFKL----KFDWDTLRQDITSKGLRNSTLTALMPCESSSQISNST 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + +K + G +V + + + + LW D+K ++G Sbjct: 633 NGIEPPRGFVSIKQSKDGILKQIVPDYELLKNQYELLW------DIKDNEG--------- 677 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKK-------LDFI 888 ++ QK++DQ+ S N + D PS G K +D + Sbjct: 678 -----------------YLQLCGIMQKFVDQSISTNTHYD-PSQFEGNKVPIKLFLMDLL 719 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKS 914 +A+ G+KT YY +R S + S Sbjct: 720 --KAYKYGIKTLYYHTTRDGGSNDMS 743 >gi|315126540|ref|YP_004068543.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas sp. SM9913] gi|315015055|gb|ADT68393.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas sp. SM9913] Length = 760 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 206/795 (25%), Positives = 336/795 (42%), Gaps = 87/795 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ ++ P+ H +E+ Sbjct: 64 KAAADQISKESPDYQYLAARLAVFHLRKKAYGQ-FEPPRLFDH----------VTNMVEQ 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 L + +L L L + RD F Y ++ L +Y + + G E Q Sbjct: 113 KRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L + ++ R FY+ +S F TP + SG R P Q SSC L Sbjct: 173 YILVAASL-FSDYPRDTRIDYIKRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G IPF K Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G D R ++ L R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 + TLFSP +V L+D + + EF+ Y YE+ E ++I A+ L+ Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG ++ D CN SP V + SNLC EI L N E A+C L Sbjct: 406 RASTGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLSNVNDEEGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A + ++ L AVR LDN++D + + AK + R +G+G++ + Sbjct: 466 AFNLGAIESLDE-----LEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + + E I ++ + AS ELA+ERGA F + + QG+ P Sbjct: 521 AYYLAKNGKRYSDGSANALTHRTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580 Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ L ++ DE L WD L+ +K GMRNS A+ P+ T + I + I Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDALRASIKEHGMRNSTLSALMPSETSSQISNATNGI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P ++ VK++ G ++ + + +D ++ ++ D+ +DG Sbjct: 636 EPPRGHISVKASKDG---ILKQVVPEYERLKDSYE--LLWDIPSNDG------------- 677 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895 ++ QK+IDQ S N D E + + + A+ + Sbjct: 678 -------------YLQLVGIMQKFIDQTISANTNYDPNKYEGGRVPMKVLLKDLLGAYKL 724 Query: 896 GLKTTYYLRSRSATS 910 G+KT YY +R S Sbjct: 725 GVKTLYYHNTRDGAS 739 >gi|118602533|ref|YP_903748.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567472|gb|ABL02277.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 757 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 200/798 (25%), Positives = 347/798 (43%), Gaps = 99/798 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G S + +++ +V A L+ VS V +DG+ D+ +I Sbjct: 5 IKVIKRNGQQESIDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ + P L+ E+ ++ + Sbjct: 65 SAADLISIEVPDYQYLAARLTIFHLRKKAFKSFTPTP----------LF-EHIKKFTDLS 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + + + ++ L + + RD F Y ++ L +Y + + G E PQ + Sbjct: 114 IYDKEILNKYSKEEIETLGAYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQLLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + + M L +E E R FY+ +S F TP + +G R P Q SSC L V Sbjct: 174 VLIGMYL-FQEYEASIRMDIVKRFYDAVSLFKISLPTPIM--AGVRTPIRQFSSCVLIEV 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL I G+G + +R +G+ I G G IPF K + Sbjct: 231 DDDLDSISAGAGAIVKYVSQRAGIGINGGKIRAIGSPIRGGEAIHTGCIPFYKHFHTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ NTG D R ++ L +R ++ Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLKD 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551 TLFSP +V L+D + +EF+ YE YE+ RK I A L+ K + Sbjct: 351 DDITLFSPHDVPGLYDAFFANQEEFKRLYEQYEQNDS------IRKQAIKARELFAKFMQ 404 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 TG ++ D CN S + SNLC EITL E A+C L Sbjct: 405 ERANTGRIYLQNVDHCNTHSAFDAKQAPIKQSNLCMEITLPTKPLYSVQDEQGEVALCTL 464 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 ++NL A + N+ + L I VR LD ++D + I+ A+ S+ + R +G+G+ Sbjct: 465 SAVNLGALDSLNEM--EALTDII---VRSLDCLLDYQDYPIKAAELSSKSRRTLGIGVTN 519 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y+ ++ ++ E + ++++ AS LA+E G F + + QG+ P Sbjct: 520 LAYYLAKNGVKYSDGSGNQLIHKTFEALQYYSLKASNTLAKELGVCPLFSQTQYSQGIMP 579 Query: 723 IDS----IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 IDS I + + E L WD L++ +K+ G+RNS A+ P + + I Sbjct: 580 IDSYKKDIDAFCDCKLE--------LDWDTLRQNIKSTGLRNSTLTALMPCESSSQISNS 631 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + I+P + +K + G ++ + + ++ ++ ++ D+K ++G Sbjct: 632 TNGIEPPRGFVSIKQSKDG---ILKQIVPEYERLKNQYE--LLWDIKDNEG--------- 677 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM--- 895 ++ QK++DQ+ S N++ D PS + + + + +LM Sbjct: 678 -----------------YLQLCGIMQKFVDQSISTNMHYD-PSQFEGNRVPMKLFLMDLF 719 Query: 896 -----GLKTTYYLRSRSA 908 G+KT YY +R Sbjct: 720 RAYKYGIKTLYYHTTRDG 737 >gi|225734495|gb|ACO25263.1| ribonucleoside-diphosphate reductase [Epizootic haematopoietic necrosis virus] Length = 565 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 169/568 (29%), Positives = 251/568 (44%), Gaps = 98/568 (17%) Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F S+P L + +G+ P SCFL VPD + G+ E L+ GG+ W VRG Sbjct: 56 FGYSSPILTSVTGSGLPI--SCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 A KS G IPFL + A QG R+G+ AY+ H D+ EF+ +R T Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 GD R+ +++ I D FM+ V + W L P + H Sbjct: 167 GDVNRKNLNLHHGVNITDAFMRCVERGENWDLVDPKSGAVAH------------------ 208 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586 +SA LW ++L F TG P++ F D N + + G+ + SNLC Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCN 259 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638 EI L ++++ TAVC L S+NL +++ + + V +LDNVI Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYNEWRETDLVECLVEMLDNVIQTFVDEAPLK 313 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 HT +A +S R+IGLG MG+ L IP+ S EAV + I A+ A+ Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKRRIPFDSEEAVRLTGIIFGGIKSAAVRAT 372 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 LA+ERG G G+ Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN++ +A+AP A A + G S S++P YV G VN +L +L+ L E Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGLDTE 450 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q QSLNL+ Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510 Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRS 905 + K L ++R AW G K YYLR+ Sbjct: 511 MGADKTDLSDVHRLAWKSGCKGLYYLRT 538 >gi|294661478|ref|YP_003579931.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15] gi|292660639|gb|ADE34887.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15] Length = 750 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 201/798 (25%), Positives = 355/798 (44%), Gaps = 80/798 (10%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE-TALIFS 205 ++ G F+ +++ +++ AC G ++ + L + + DG++ ++ A+ ++ Sbjct: 7 VVKSSGVRQPFDKEKIYKVLKWACDG-HNIDVRAFLENVLELIRDGMTTKQIQRIAIKYA 65 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + KEP++ V + + LR++V P + ++ + +E G Sbjct: 66 ADHISVKEPDWQYVASNLEMFALRKDVYGQFDPIP-----------FYDHIVKMVEAGKY 114 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323 + + E D+ + +++DF F Y G Q L +Y + G E PQ FM Sbjct: 115 DKEILEKYSKQDIQVFERAIDHDKDFEFSYAGSQQLIGKYLVQDRDTGEIFETPQYAFML 174 Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDD 379 +AM L +ET + V+FYN +S TP + +G R P Q SSC + D Sbjct: 175 IAMCLHQEETGLAQVTHIVDFYNAISDRKLSLPTPIM--AGVRTPTRQFSSCVVIESGDS 232 Query: 380 LYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 L G A+ + + KY G+G + +R +G+ I G GVIPF K Sbjct: 233 L-GSLNAV--TSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVK 289 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++VE L L+ N G + R ++ + L KR+ Sbjct: 290 SCSQGGVRGGAATLYYPFWHLEVENLLVLKNNKGVEENRVRHLDYGVQLNQLMYKRLMNR 349 Query: 497 AGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSPD +D L+DL+ + + A+E ++ ++I AV L++ + + Sbjct: 350 DYITLFSPDVANDRLYDLFYEADQTAFEELYESLEKDPTVRKKRIKAVDLFQLLAQERAQ 409 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---SEETAVCNLGSINLLAHFA 612 TG +I + ++ V SNLC EI + +S ++ +G L+A Sbjct: 410 TGRKYIF--NTHHVNQQGSFTVPVRMSNLCCEIAIPTSPLDDDDKMAGEIGLCTLMAIVL 467 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 +N D + R AVR LDN++D + ++ A K+ R++G+G+ + S L + Sbjct: 468 DNA-DISEFPKLTRIAVRALDNLLDYQNYPVKAALKAKQ-RRSLGVGITNYASWLASNYC 525 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y S + E ME F+ + AS+ELA+ERGA + + + +G+ PID + Sbjct: 526 DY-SEAYTDKVHELMEAFQFNLLVASMELAKERGACGLYNDTKYARGLLPID---WYCKT 581 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 DEL + W+ L+ ++K G+RNS A+ P + + + + I+P + +K Sbjct: 582 VDEL-VAPVYNCDWEWLRSQIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGLVSIK 640 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 S+ G + N + N+ Q D +D ++ D+ G+ G + + Sbjct: 641 SSKEGHY---NQVVPNQNNQIDFYD--LLWDMAKR-GNKGYLSHV--------------- 679 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL------DFIYRQAWLMGLKTTYYL 903 + QK++DQ+ S N D + GK D +Y + G+KT YY Sbjct: 680 --------AVMQKFVDQSISANTNYDPANYEDGKVKTEDIIDDLLYANYY--GVKTLYYH 729 Query: 904 RSRSATSVEKSTLKGVDG 921 +R E+ + G Sbjct: 730 NTRDGAGDEEEAAEDCAG 747 >gi|307547023|ref|YP_003899502.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] gi|307219047|emb|CBV44317.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] Length = 728 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 188/667 (28%), Positives = 301/667 (45%), Gaps = 80/667 (11%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 D Y F F+ +LG Y Y L R + + F RV M E A Sbjct: 104 DQAYALKFRFQSFLGAFKYYTSYTLKTFDGRRYL-ERFEDRVCMVALTLARGDEALARTL 162 Query: 343 YNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 + + F +TPT N G + +L SCFL + D++ I A+ L+K GG+ Sbjct: 163 VDEILHGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAINSALQLSKRGGGVA 222 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 223 FSLSNIRESGAPIKRIANQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLNVHHPDILR 282 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EI 520 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F +I Sbjct: 283 FLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEPMYLFSP---YDVERVYGVPFGDI 339 Query: 521 AY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y+ D I+ K A L++ + + FE+G+P++ F+D N +P G + Sbjct: 340 SVTEKYQEMVDDARIRK-TKTDARELFQTLAELQFESGYPYVLFEDTANRDNPI--AGRI 396 Query: 580 HSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 + SNLC+EI +NS SE E CNLGS+N+ D +++ T Sbjct: 397 NMSNLCSEILQVNSPSEYDDDLDYRHTGEDISCNLGSLNIA-----RVMDSPDFGTSVET 451 Query: 628 AVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 AVR L V ++ + ++ ++N AIGLG M L HI Y S E ++ + Sbjct: 452 AVRALSAVSEMSDIRSVPSIAEANARSHAIGLGQMNLHGFLAREHIHYGSEEGLDFTNIY 511 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDS---------IGLLAEVRDEL 736 I++HA+ AS LA ERG ++ F+ S + G + D + E+ D Sbjct: 512 FYTITYHAVRASNRLAIERGERFAGFENSAYASGSY-FDKYTENEWQPRTQRVRELFDNA 570 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + +R W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 571 GIQIPTREDWRELKASVMQYGLFNRNLQAVPPTGSISYINHATSSIHP------------ 618 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852 +V++++ R +G +G + + DD + + A+EI Sbjct: 619 ---------VVSKIEIR-------------KEGKLGRVYYPAPYLNDDNQDYYRDAYEIG 656 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R A ++ Sbjct: 657 PEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYVRLRQA-AL 715 Query: 912 EKSTLKG 918 E + ++G Sbjct: 716 EGTEVEG 722 >gi|152979131|ref|YP_001344760.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus succinogenes 130Z] gi|150840854|gb|ABR74825.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinobacillus succinogenes 130Z] Length = 756 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 182/673 (27%), Positives = 296/673 (43%), Gaps = 47/673 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G + +L ++ A GL +VS V ++ Y+G+ +D+ +I Sbjct: 5 LMVTKRNGKQEPLDLDKLHRVITWAAEGLHNVSVSQVELRSHIQFYEGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI K+ P+Y + AR + LR++ ++ P H + +Y + + Sbjct: 65 SAADLISKDAPDYQYLAARLSVFHLRKKAFGQ-FEPPHLYEHVKKLVEMGKYDQALLTD- 122 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 R E M DF L + RD F Y + L +Y + + G E Q + Sbjct: 123 -YGREEWEQMNDF--------LDHWRDMNFSYAATKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L + K R FY+ SSF TP + +G R P Q SSC L Sbjct: 174 ILVAASL-FSQYPKATRLDYVRRFYDATSSFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGQIRALGSPIRGGEAFHTGCIPFYKYFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L+D + +FE Y YE+ + R + A+ L+ ++ Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDKFEQLYVQYEQDPAIRK----RSVKAIELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604 TG +I D N SP V V SNLC EI L N E A+C L + Sbjct: 407 ASTGRIYIHNVDHTNTHSPFDPSVAPVRQSNLCLEIALPTKPLQNINDEDGEIALCTLSA 466 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + D+L + AVR LD ++D + + A++S+ R++G+G++ + Sbjct: 467 FNL-----GKLENLDELDNLADLAVRALDALLDYQDYPVAAARRSSLGRRSLGIGVINYA 521 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L ++ Y++ A + + E I ++ + AS+ LA+E+G F + + QG+ PID Sbjct: 522 YYLAKNNMRYSNGSANALTHRTFEAIQYYLLKASMNLAKEQGKCELFHETRYAQGILPID 581 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + D L + W+ L+ ++ G+RNS A+ P+ T + I + I+P Sbjct: 582 T---YKKDVDGLT-DEPLHYDWETLRADIQKYGLRNSTVTALMPSETSSQISNATNGIEP 637 Query: 785 SYQNLYVKSNMSG 797 ++ VK++ G Sbjct: 638 PRGHISVKASKDG 650 >gi|320095250|ref|ZP_08026947.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 178 str. F0338] gi|319977791|gb|EFW09437.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 178 str. F0338] Length = 718 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 201/689 (29%), Positives = 306/689 (44%), Gaps = 77/689 (11%) Query: 260 IEEGV--KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-I 314 +EEG K L +M D +Y Y F F +LG Y Y L +G R + Sbjct: 71 VEEGYYEKHVLDQYAMEDIKALY---KQAYAHKFRFPTFLGAFKYYTSYTLKTFDGKRYL 127 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFL 373 E + + V+M LA + + A F + + + F +TPT N+G +L SCFL Sbjct: 128 ERFEDRVVMVSMYLARGDVD---LAASFVDEIMTGRFQPATPTFLNAGKAARGELVSCFL 184 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D++ I + L+K GG+ T +R GA I +S GV+P +K+ D Sbjct: 185 LRVEDNMESIARGINSALQLSKRGGGVALQLTNLREAGAPIKKIQNQSSGVVPVMKLLED 244 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 245 SFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGVVIPDITFELA 304 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N LFSP +V ++ + E + E Y D G I +KI+A ++ + + Sbjct: 305 RKNEDMYLFSPYDVERVYGVPFSEIPVT-EKYHEMVDDGRIHK-KKINARRFFQTLAEIQ 362 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CN 601 FE+G+P+I F+D N +P + G V SNLC+EI T N V CN Sbjct: 363 FESGYPYIVFEDTVNRANPIK--GRVTMSNLCSEILQVSEASTYNEDLSYAHVGKDISCN 420 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ D + TI TA+R L V D+ + + + N AIGLG Sbjct: 421 LGSLNIA-----KTMDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARGNAMSHAIGLGQ 475 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L H+ Y S EA++ + + F A+ AS +A+ERG + F+ S + G Sbjct: 476 MNLHGYLAREHVHYGSEEALDFTNIYFMTVLFEAVRASCAIARERGERFEGFEDSAYASG 535 Query: 720 VF---PIDSIGLLAEVR-DELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTAT 771 F ID A + EL + R+P W L V GM N N A+ PT + Sbjct: 536 EFFRKYIDEAWEPATDKCRELLAASSIRVPTRDDWRALAADVARYGMYNQNLQAVPPTGS 595 Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + + K G ++ NE Sbjct: 596 ISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMTNE--------------------- 634 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889 N+E D A+EI P +I++ + + +DQ SL L Y D + + L+ Y Sbjct: 635 --NLEYYRD--------AYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSY 684 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 685 IYAWRKGIKTLYYMRLRQ-MALEGTEVEG 712 >gi|220929802|ref|YP_002506711.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium cellulolyticum H10] gi|220000130|gb|ACL76731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium cellulolyticum H10] Length = 795 Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 177/599 (29%), Positives = 283/599 (47%), Gaps = 99/599 (16%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAV---EFYNLLSSFH 350 +++L RY NG+ +E + F RVA +A + T+++ AV EFYN++++ Sbjct: 8 VKVLEKRYLEKDENGNLLEDCEGMFRRVAKAIASADAAYTDEKGLAVIEHEFYNMMANLE 67 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + GIF +++ A++ K GG G ++ +R Sbjct: 68 FLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFSFSRLRAK 127 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G+ ++ T G + G + F+KV N AV QGG R+GA L H D+ EF+ + Sbjct: 128 GSAVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFISCKS--- 184 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQA 529 D + N + I + FM+ V N + L P + L +E F+I E Sbjct: 185 -DNSEITNFNLSVGITEDFMRAVEHNLEYELLDPRTKKPVAKLNAREVFDIIVE------ 237 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 M +E G P I F D N + +G + S+N C E Sbjct: 238 ----------------------MAWENGEPGIIFLDRLNRDNVTPKLGEIESTNPCGEQP 275 Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 L CNLGSINL + A+ D++KL T+R AVR LDNVI++N + + + Sbjct: 276 LLPYE----ACNLGSINLYNMMDDAHKGLDFEKLEYTVRKAVRFLDNVIEVNKYPLPEID 331 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MG+ L L + Y S A+++AD+ M FI+ A AS LA+ +G Sbjct: 332 RMTRGTRKIGLGVMGWADTLCALGVAYNSQAAIDLADKVMSFINDTAQKASQNLAELKGV 391 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + ++ S++ Q K I MRN+ IA Sbjct: 392 FPFYEDSIYAQ-----------------------------------KGIKMRNATTTTIA 416 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT T++ I GVS I+P + Y+++ M NS LV + ++ EA +S Y Sbjct: 417 PTGTLSLIAGVSSGIEPIFAISYIRNVMD------NSELV---EVNPVFKEAALSGNFYS 467 Query: 828 D---------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 D G++ N+ +P ++++I TA ++ P W ++ + Q+ D A S + L Sbjct: 468 DELMKKIARVGTVKNMNEVPTNVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNL 526 >gi|219853155|ref|YP_002467587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosphaerula palustris E1-9c] gi|219547414|gb|ACL17864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosphaerula palustris E1-9c] Length = 730 Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 165/587 (28%), Positives = 261/587 (44%), Gaps = 103/587 (17%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY ++S F+ ++PTL N+GT QLS+CF VPD + GIF A+++ A++ K GG G Sbjct: 44 FYEAMASLRFLPNSPTLMNAGTEIGQLSACFTLPVPDSIGGIFDAMKQGAIIHKTGGGTG 103 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 +++ +R G+ + T G + G I F++V N + QGG+R+GA L H D+ Sbjct: 104 YNFSNIRPEGSPVQSTEGVASGPISFMRVFNAATEVIKQGGRRRGANMGILNVQHPDILA 163 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F++ + G+ + N + + D FM V++ + D+V +H G+ + Sbjct: 164 FINAKTREGE----IANFNISVMVDDAFMHLVSEK------TFDKVWLVHPHTGEAITV- 212 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 G+I W ++ +++ G P I F D N +P +G++ + Sbjct: 213 ----------GQI-----------WSGIVDGIWKNGEPGILFYDEINRHNPTPQLGMIDT 251 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 +N C E L C LGSINL A + D D L T+RT VR+LD VID N + Sbjct: 252 TNPCGEQPLLPYES----CVLGSINLAACVKGHVLDEDLLKETVRTGVRLLDIVIDKNVY 307 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 IE+ ++ T R IGLGLMG AL ++ +PY SPEA + M+ +S A+ S L Sbjct: 308 PIEEIAEATRTTRKIGLGLMGVHDALLMVRLPYDSPEARVWCEHVMKVVSETAVDESRVL 367 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ G + + +GS+W + +RN+ Sbjct: 368 AELLGPFPALQGSVWTE-------------------------------------FQVRNA 390 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 IAPT TI+ + G S I+P + Y + N G F VVN L++ L + Sbjct: 391 AMTTIAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKTFLVVNPVFKEALEE-TLALQGY 449 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK------WIDQAQ--- 871 D + H R+ + + +H T D +WL + R K W D + Sbjct: 450 SGDDQTH--------RVDEVIAHVHETGTVQDLVWLPVAFRRLCKTALDIPWRDHVEMQA 501 Query: 872 --------SLNLYLDEPSGKKLDFIYRQ---AWLMGLKTTYYLRSRS 907 S++ ++ P D AW +GLK R+ S Sbjct: 502 AFQREVHASISKTINMPKSATRDDCAEALLLAWRLGLKGITIYRTNS 548 >gi|297570726|ref|YP_003696500.1| ribonucleoside-diphosphate reductase, subunit alpha [Arcanobacterium haemolyticum DSM 20595] gi|296931073|gb|ADH91881.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcanobacterium haemolyticum DSM 20595] Length = 716 Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 192/649 (29%), Positives = 299/649 (46%), Gaps = 71/649 (10%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y F F +LG Y Y L +G R +E + + VA+ LA E K V+ Sbjct: 97 YAHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVVVALTLAAGNVELAKNLVD-- 154 Query: 344 NLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 +L+ F +TPT N+G + +L SCFL V D++ I + L+K GG+ Sbjct: 155 EILTG-RFQPATPTFLNAGKKARGELVSCFLLRVEDNMESISRGINSALQLSKRGGGVAL 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R LGA I +S GV P +K+ D NQ G R+GA YL H D+ F Sbjct: 214 NLSNLRELGAPIKRIENQSSGVNPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIMRF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521 LD ++ D++ R ++ IPD+ + +NA LFSP D+ +YG F EI+ Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNADMYLFSP---YDVERVYGVPFTEIS 330 Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E YE D I+ KI+A ++ + + FE+G+P+I ++D N +P G + Sbjct: 331 VTEKYEEMVDDRRIRK-TKINARQFFQTLAEIQFESGYPYIVYEDTVNRANPID--GRIT 387 Query: 581 SSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI ++ S A CNLGS+N+ D T+ TA Sbjct: 388 MSNLCSEILQVSEPSRYNADLSYEHVGKDISCNLGSLNIA-----KTMDSPDFGQTVETA 442 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D N + ++ N AIGLG M L I Y S EA++ + Sbjct: 443 IRALTAVSDQTNIAAVPSIERGNDMSHAIGLGQMNLHGYLGREKIFYGSDEALDFTNIYF 502 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL-----LAEVRDELA-MNR 740 +++HAI +S+ +A+ERG + F+ S + G + I A VR+ A ++ Sbjct: 503 YTVAYHAIRSSMLIAKERGVRFEGFERSAYADGSYFAKYIEREWAPETARVRELFANVHI 562 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W L+ V GM N N A+ PT +I+ I + SI P Sbjct: 563 PTVADWVALRDAVAAHGMYNQNLQAVPPTGSISYINHSTSSIHP---------------- 606 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V++++ R E I + Y + N D K+ + A+EI P +I++ Sbjct: 607 -----IVSKIEIRK---EGKIGRVYYPAAYLTN------DNKEYYQDAYEIGPKAIIDTY 652 Query: 861 SRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + + +DQ SL L Y D + + ++ Y AW G+K+ YY+R R A Sbjct: 653 AAATQHVDQGLSLTLFYPDTVTTRDVNKSYIYAWRKGIKSLYYMRIRQA 701 >gi|326571162|gb|EGE21186.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis BC7] Length = 758 Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 181/674 (26%), Positives = 299/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ +I Sbjct: 7 IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H +++ E Sbjct: 67 AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114 Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K +L + +D + L + + + RD Y ++ + +Y + + E PQ Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 +M V M L + + ++ FY+ S+F+ TP + SG R P Q SSC L Sbjct: 174 LYMLVGMCLFARYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I G+G + +R LG+ I G + G IPF K+ Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L++ + + FE Y YE AD K RK+ A L+ ML Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E A+C L Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 +INL D ++ A I VR LD ++D + + AKK + R +G+G++ + Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PI Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D + L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + +K++ G Sbjct: 639 PPRGLVSIKASKDG 652 >gi|167043944|gb|ABZ08631.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG3J11] Length = 890 Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 169/642 (26%), Positives = 299/642 (46%), Gaps = 58/642 (9%) Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337 A LK F++++ +G L +F + +E+ + M+V+ L +K Sbjct: 193 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 252 Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ GI + A++ Sbjct: 253 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIMKTTSDAALIF 312 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA +E Sbjct: 313 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 372 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513 WH D+E+F+ + G +++ W D + V G +TL SP + Sbjct: 373 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 422 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571 + GEI I +A +++ P + F D N + Sbjct: 423 --------------NSSAGEINAHHLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 462 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626 + G + ++N C E +L CNLGSI NL+ A+ Q FD+ + I Sbjct: 463 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYEFDWQRYEEIII 518 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY S E + + Sbjct: 519 KTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 578 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E ++++++ SV LA+ RG + + + +G P+ G + ++E + W Sbjct: 579 AEALTYYSMEESVALAKNRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 630 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L ++++ G+RN +APT T++ + S ++P++ ++ K G F N Sbjct: 631 DALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 690 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 LK+ +L+ + +++ + + GS I IPD ++ I TA +I + + + Q W Sbjct: 691 EQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 750 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I A + + + ++ S + + Y A MGLK R S Sbjct: 751 ISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGS 792 Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 8/101 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI KAF A +I++ D + + +L +H S Sbjct: 19 QVRKRDGSVSDFNRDKILNAIYKAFSASNKPDKGLAIKLSDGV-------LVKLTEHGFS 71 Query: 90 AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 A +E IQD VE +L+ GH I + Y+LYR ER +R Sbjct: 72 ANNPPSVEAIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 112 >gi|154508381|ref|ZP_02044023.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC 17982] gi|153798015|gb|EDN80435.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC 17982] Length = 718 Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 198/662 (29%), Positives = 300/662 (45%), Gaps = 76/662 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y F F +LG Y Y L +G R + F RVAM L L + E A F Sbjct: 97 YAHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVAMVSLYLARGDIE-LARSFV 153 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + + F +TPT N+G +L SCFL + D++ I + L+K GG+ Sbjct: 154 DEIMTGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GV+P +K+ D+ NQ G R+GA YL H D+ +F Sbjct: 214 QLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F EI+ Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEIS 330 Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D G I RKI+A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 331 VTEKYHEMVDDGRIHK-RKINARRFFQTIAEIQFESGYPYIVFEDTVNKANPIK--GRIT 387 Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI T N V CNLGS+N+ ++ F + TI A Sbjct: 388 MSNLCSEILQVSEASTYNDDLSYDHVGKDISCNLGSLNIAKTMDSSDF-----SKTIEMA 442 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D+ + ++ + N AIGLG M L H+ Y S EA++ + Sbjct: 443 IRGLTAVSDLSDIGSVPSIARGNAMSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYF 502 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-LAEVRD---ELAMNRTS 742 + F AI AS ++A+ERG + F+ S + G F I A D EL + Sbjct: 503 MTVLFEAIKASCKIARERGETFEGFEESKYASGEFFRKYIDEEWAPTTDKCRELLAASSI 562 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797 ++P W+ L V GM N N A+ PT +I+ I + SI P + + K G Sbjct: 563 KVPTQADWEALAADVAKYGMYNQNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIG 622 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 ++ NE N+E D A+EI P +I Sbjct: 623 RVYYPAPYMSNE-----------------------NLEYYQD--------AYEIGPEKII 651 Query: 858 ESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 ++ + + +DQ SL L Y D + + L+ Y AW G+KT YY+R R ++E + + Sbjct: 652 DTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYAWKKGIKTLYYMRLRQ-MALEGTEV 710 Query: 917 KG 918 +G Sbjct: 711 EG 712 >gi|167042931|gb|ABZ07646.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_ANIW137N13] Length = 885 Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 169/642 (26%), Positives = 299/642 (46%), Gaps = 58/642 (9%) Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337 A LK F++++ +G L +F + +E+ + M+V+ L +K Sbjct: 188 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 247 Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ GI + A++ Sbjct: 248 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIMKTTSDAALIF 307 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA +E Sbjct: 308 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 367 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513 WH D+E+F+ + G +++ W D + V G +TL SP + Sbjct: 368 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSEDGKYTLRSPKD------- 417 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571 + GEI I +A +++ P + F D N + Sbjct: 418 --------------NSSAGEINAHHLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 457 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626 + G + ++N C E +L CNLGSI NL+ A+ Q FD+ + I Sbjct: 458 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYEFDWQRYEEIII 513 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY S E + + Sbjct: 514 KTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 573 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E ++++++ SV LA+ RG + + + +G P+ G + ++E + W Sbjct: 574 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 625 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L ++++ G+RN +APT T++ + S ++P++ ++ K G F N Sbjct: 626 DALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 685 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 LK+ +L+ + +++ + + GS I IPD ++ I TA +I + + + Q W Sbjct: 686 EQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 745 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I A + + + ++ S + + Y A MGLK R S Sbjct: 746 ISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGS 787 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 8/101 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A +I++ D + + +L +H S Sbjct: 14 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDKELAIKLSDAV-------LIKLTEHGFS 66 Query: 90 AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 +E IQD VE +L+ GH I + Y+LYR ER +R Sbjct: 67 VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 107 >gi|283786770|ref|YP_003366635.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter rodentium ICC168] gi|282950224|emb|CBG89860.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter rodentium ICC168] Length = 714 Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 192/658 (29%), Positives = 309/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVVMVALTLARGD---ETLARQLTDEIL 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 AGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNAALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ + +NA LFSP D+ +YGK F +IA + Sbjct: 274 RENADEKIRIKTLSLGVVIPDVTFRLAKENAQMALFSP---YDVERIYGKPFGDIAVSDL 330 Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Q + +V +K I+A ++++ + FE+G+P+I F+D N SP G ++ SNL Sbjct: 331 YDQL-VADARVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNRASPV--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+S CNLGS+N +AH D T+ TA+R L Sbjct: 388 CSEILQVNSASTYDDNLDYAQTGHDISCNLGSLN-IAH----TMDSPDFGRTVETAIRGL 442 Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D++ ++ + N AIGLG M L I Y SPE ++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTS 742 +HA++ S++LA+ERG A++ FK S + G + D +VR A + + Sbjct: 503 WHALNTSMKLARERGQAFAGFKQSRYASGEYFSQYLQGDWQPKTEKVRALFARSGITLPT 562 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWRQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE N++ D A+EI P +I++ + Sbjct: 623 PAPFMTNE-----------------------NLDMYQD--------AYEIGPQKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINRAQIYAWRKGIKTLYYIRLRQ-LALEGTEIEG 708 >gi|212712929|ref|ZP_03321057.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM 30120] gi|212684407|gb|EEB43935.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM 30120] Length = 710 Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 194/689 (28%), Positives = 310/689 (44%), Gaps = 78/689 (11%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIE 315 +Y EE V A+ DF + Y F F+ +LG Y Y L +G R Sbjct: 66 KYYEEEVLAQY------DFPFIKQLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKR-- 117 Query: 316 MPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFL 373 + + RV M L L + K ++ F + + + F +TPT N G + +L SCFL Sbjct: 118 YLERYEDRVCMVALTLAQGSKSLASL-FVDEIITGRFQPATPTFLNCGKKQRGELISCFL 176 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D++ I ++ L+K GG+ + +R GA I +S GV+P +K+ D Sbjct: 177 LRIEDNMESIGRSVNSALQLSKRGGGVAFLMSNLREQGAPIKQIKNQSSGVVPVMKMLED 236 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 237 AFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLA 296 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFSP ++ ++ + E + E Y + IK F KI+A ++ + + Sbjct: 297 KNNEDMYLFSPYDIQKIYGVPMSEISVT-EKYHEMVNNKAIKKF-KINAREFFQTIAEIQ 354 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCN 601 FE+G+P+I F+D N +P G ++ SNLC+EI +N +S+ + CN Sbjct: 355 FESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNQASQYEDDLSYQEIGKDISCN 412 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ N D A +I TA+R L V D+ N ++ K N AIGLG Sbjct: 413 LGSMNIA-----NTMDSPDFALSIETAIRALTAVSDMSNIGSVPSIAKGNRQSHAIGLGQ 467 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L HI Y S E ++ + +++HA+ S +LA ER + F+ S + G Sbjct: 468 MNLHGFLAREHIHYGSEEGLDFTNIYFYTVAYHALKTSNQLAIERQQTFDGFESSSYASG 527 Query: 720 VF---PIDSIGL-LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTAT 771 + I++ L + EL +P W LK+ V T GM N N AI PT + Sbjct: 528 EYFDKYINNTWLPKTQTVQELFRRSGIEIPTQANWQALKQSVMTNGMYNQNLQAIPPTGS 587 Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + + K G F+ NE Sbjct: 588 ISYINNSTSSIHPVVAPIEIRKEGKIGRVYYPAPFMTNE--------------------- 626 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 N++ D A++I P +I++ + + +DQ SL L+ D + + ++ Sbjct: 627 --NLQFYQD--------AYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGNATTRDINKAQ 676 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R T++E + ++G Sbjct: 677 IYAWRKGIKTLYYIRLRQ-TALEGTEVEG 704 >gi|237785989|ref|YP_002906694.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium kroppenstedtii DSM 44385] gi|237758901|gb|ACR18151.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium kroppenstedtii DSM 44385] Length = 718 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 191/661 (28%), Positives = 310/661 (46%), Gaps = 74/661 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y F F+ +LG Y Y L +G+R +E + VA+GLA + +R V+ Sbjct: 97 YSYKFRFKTFLGAYKYYTSYTLRTFDGNRYLERYEDRVCMVALGLADGDISLARRLVD-- 154 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + F +TPT N G + + SCFL + D++ I ++ L+K GG+ Sbjct: 155 -EIIQGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 214 LLSNLREQGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F +I Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFSDIG 330 Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E+Y+ + IK KI+A ++ + + FE+G+P+I F+D N +P G ++ Sbjct: 331 ISEHYDEMVEDPRIKK-SKINARQFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRIN 387 Query: 581 SSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI +NS SE A CNLGS+N+ ++ FD TI TA Sbjct: 388 MSNLCSEILQVNSPSEFNADLTYQHIGDDISCNLGSLNIAMVMDSDDFD-----GTIDTA 442 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + ++ ++ N AIGLG M L HI Y S EA++ + Sbjct: 443 IRGLTAVSDQTSIDSVPSVRQGNEHSHAIGLGQMNLHGYLGREHIYYGSEEALDFTNAYF 502 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVR---DELAM 738 + + AS LA+ERG ++ F+ S + G F P D +V+ +E ++ Sbjct: 503 AAVMVACLKASNRLAKERGVTFTGFEDSDYASGAFFDRYDPKDFAPKTEKVKRIFEESSI 562 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + T+ W +L++ ++ G+ N N AI PT +I+ I + SI P + ++ Sbjct: 563 SVTTPEEWAQLREDIQQYGLYNRNLQAIPPTGSISYINNSTSSIHPIASRIEIRK----- 617 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 E I + Y + N D+L A+EI +I+ Sbjct: 618 -------------------EGKIGRVYYPAPHMNN-----DNLDYFK-DAYEIGYEKVID 652 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + K++DQ SL L+ D + + ++ AW G+KT YY+R R A ++E + ++ Sbjct: 653 TYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWKNGIKTLYYIRLRQA-ALEGTEVE 711 Query: 918 G 918 G Sbjct: 712 G 712 >gi|260599070|ref|YP_003211641.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter turicensis z3032] gi|260218247|emb|CBA33171.1| Ribonucleoside-diphosphate reductase 2 subunit alpha [Cronobacter turicensis z3032] Length = 716 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 208/740 (28%), Positives = 320/740 (43%), Gaps = 91/740 (12%) Query: 215 NYAKVTARFLLEKLRR--EVLTTVYKKPQKAT----HHEMQCLYPEYFCRYIEEGVKARL 268 N R EK R E + +P+ T H + L E Y +E V R Sbjct: 26 NLYDADGRIQFEKDREAVEAFMAAHVQPRSVTFPDTHARLAYLVSE---GYYDENVLKRY 82 Query: 269 LHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRI--EMPQAFFMRV 324 D D D + F F+ +LG Y Y L +G R P M V Sbjct: 83 ------DPDFAAGLFDEAHRDGFTFKTFLGAWKFYTSYTLKTFDGKRYLEHFPDRACM-V 135 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 A+ LA + E A + + S F +TPT N G + +L SCFL + D++ I Sbjct: 136 ALTLACGD---ETLARQILKEILSGRFQPATPTFLNGGKQQRGELVSCFLLRIEDNMESI 192 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 193 GRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 252 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ + NA LFS Sbjct: 253 RQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKANAQMALFS 312 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +I+ Q E R ISA L++++ + FE+G+P+I Sbjct: 313 P---YDVEHIYGKPFGDISVSEMYTQLVEDERIRKRYISARELFQRLAEIQFESGYPYIM 369 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 F+D N +P G ++ SNLC+EI +NS+S CNLGS+N +AH Sbjct: 370 FEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCNLGSLN-IAH 426 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 427 ----TMDSPDFGRTVETAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 482 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP------ 722 I Y SPE ++ + +++HA++ S+ LA+ERG + F+ S + G + Sbjct: 483 EGIAYGSPEGLDFTNLYFYTVTWHALNTSMMLARERGERFEGFEASRYASGEYFDKYLTQ 542 Query: 723 --IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +AE+ + + W +L+ V G+ N N A+ PT +I+ I + Sbjct: 543 TWTPRTARVAELFARAGITLPTPEMWRQLRDDVMRHGLYNRNLQAVPPTGSISYINHATS 602 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K G F+ NE N+ R D Sbjct: 603 SIHPIVSKIEIRKEGKIGRVYYPAPFMTNE-----------------------NLARYQD 639 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 640 --------AYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIK 691 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 692 TLYYIRLRQ-LALEGTEIEG 710 >gi|31791752|ref|NP_854245.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium bovis AF2122/97] gi|121636488|ref|YP_976711.1| putative ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988960|ref|YP_002643647.1| putative ribonucleoside-diphosphate reductase large subunit [Mycobacterium bovis BCG str. Tokyo 172] gi|31617338|emb|CAD93447.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium bovis AF2122/97] gi|121492135|emb|CAL70600.1| Probable ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772073|dbj|BAH24879.1| putative ribonucleoside-diphosphate reductase large subunit [Mycobacterium bovis BCG str. Tokyo 172] Length = 710 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 168/636 (26%), Positives = 272/636 (42%), Gaps = 89/636 (13%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 64 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N LH L K+ ++ Sbjct: 301 SVGVTDAFLRAVERNG------------LHRLVNPRTG---------------KIVARMP 333 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IGLG+M Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 449 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ RN+ ++APT TI+ I G + Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + + ++ + VN + R + + +I+++ G + R+P ++ Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQR-GGVRGYPRLPAEV 592 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + TA EI P W + + Q+ ++ A S + L Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL 628 Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 12/105 (11%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +V +R+G + FD ++I A+ +A +R + D TV + + Sbjct: 7 AKVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADAL 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 55 GRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99 >gi|293193539|ref|ZP_06609809.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces odontolyticus F0309] gi|292819895|gb|EFF78897.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces odontolyticus F0309] Length = 718 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 198/662 (29%), Positives = 298/662 (45%), Gaps = 76/662 (11%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y F F +LG Y Y L +G R + F RVAM L L + E A F Sbjct: 97 YAHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVAMVSLYLARGDIE-LARSFV 153 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + + F +TPT N+G +L SCFL + D++ I + L+K GG+ Sbjct: 154 DEIMTGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GV+P +K+ D+ NQ G R+GA YL H D+ +F Sbjct: 214 QLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F EI+ Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEIS 330 Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D G I RKI+A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 331 VTEKYHEMVDDGRIHK-RKINARRFFQTIAEIQFESGYPYIVFEDTVNKANPIK--GRIT 387 Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI T N V CNLGS+N+ D + TI A Sbjct: 388 MSNLCSEILQVSEASTYNDDLSYDHVGKDISCNLGSLNIA-----KTMDSPDFSKTIEMA 442 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D+ + ++ + N AIGLG M L H+ Y S EA++ + Sbjct: 443 IRGLTAVSDLSDIGSVPSIARGNAMSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYF 502 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-LAEVRD---ELAMNRTS 742 + F AI AS ++A+ERG + F+ S + G F I A D EL + Sbjct: 503 MTVLFEAIKASCKIARERGETFEGFEESKYASGEFFRKYIDEEWAPTTDKCRELLAASSI 562 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797 ++P W+ L V GM N N A+ PT +I+ I + SI P + + K G Sbjct: 563 KVPTQADWEALAADVAKYGMYNQNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIG 622 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 ++ NE N+E D A+EI P +I Sbjct: 623 RVYYPAPYMSNE-----------------------NLEYYQD--------AYEIGPEKII 651 Query: 858 ESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 ++ + + +DQ SL L Y D + + L+ Y AW G+KT YY+R R ++E + + Sbjct: 652 DTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYAWKKGIKTLYYMRLRQ-MALEGTEV 710 Query: 917 KG 918 +G Sbjct: 711 EG 712 >gi|323966927|gb|EGB62355.1| ribonucleotide reductase [Escherichia coli M863] gi|327251393|gb|EGE63079.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli STEC_7v] Length = 714 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 194/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + +K A + + + S F +TPT N G R +L SCFL + D++ I Sbjct: 132 MVALTLAQGDK-TLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + I+A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQINSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ ++ +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|147677926|ref|YP_001212141.1| ribonucleotide reductase, alpha subunit [Pelotomaculum thermopropionicum SI] gi|146274023|dbj|BAF59772.1| Ribonucleotide reductase, alpha subunit [Pelotomaculum thermopropionicum SI] Length = 573 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 177/629 (28%), Positives = 284/629 (45%), Gaps = 96/629 (15%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-------TEKEKRAVEFYNLLSSF 349 +++L RY NG+ IE P+ RVA +A E E + A F+ ++ + Sbjct: 8 MKVLAGRYLRRDENGNVIETPEEMCWRVARCVAAAEEKFGADCKEVAEWAERFFAVMDAL 67 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N G QL++CF+ + D + IF L+ A++ K GG G D++ +R Sbjct: 68 EFLPNSPTLINCGPAGGQLAACFVLPLADSIEKIFSTLKYTAIIHKSGGGTGFDFSRLRP 127 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 + + GT G++ G + F++V N + QGG R+GA L H D+ EF+ + + Sbjct: 128 KNSPVRGTGGRASGPVSFMRVFNAATEEIKQGGVRRGANIGILRADHPDIMEFIACKADE 187 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G R + N + F V + + W L G Sbjct: 188 GTFR----NFNLSVAATGDFFTAVERGSRWPL----------SFNG-------------- 219 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 KV+R+ A ++ + +G P + F D N +P +G + ++N C E Sbjct: 220 -----KVYREAEAREIFYSIARHAHASGEPGMLFIDSINRANPTPSLGQISATNPCGEQP 274 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L CNLGSINL D+++L ++ AVR LD+VI++N + + K+ Sbjct: 275 LLPYES----CNLGSINLSRLTKGTGVDWERLGLLVQLAVRFLDDVIEVNRFPLPQIAKA 330 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 R IGLG+MG+ L L IPY S A+ +A+E M FI A AS LA++RG + Sbjct: 331 TLRTRKIGLGVMGWADMLFKLGIPYDSGAALALAEEVMSFILQKAREASAGLARQRGPFP 390 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 S W Q V+ + EL +RN+ IAPT Sbjct: 391 S-----WRQSVY------------------------YPELP-------LRNATLTTIAPT 414 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVN----SFLVNELKQRDLWDEAMISDL 824 +I+ I G S I+P Y +Y + + + V+N +L E+K E ++ L Sbjct: 415 GSISAIAGTSSGIEPVYALVYSRLVLDDEKILVINKPFLQYLETEIKPES--GENILKKL 472 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 + S+ ++ I + + + TA EI P W ++ + QK+ D A S + L P+ Sbjct: 473 ETGV-SLQSLPAIKPEARAVFKTALEIAPDWHLKMQAAFQKYTDNAVSKTINL--PANAT 529 Query: 885 LD---FIYRQAWLMGLK--TTYYLRSRSA 908 +D I+R+A+ +GLK T Y SRS Sbjct: 530 VDEIASIFRKAYQLGLKGVTVYRTGSRSG 558 >gi|307944766|ref|ZP_07660104.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp. TrichSKD4] gi|307771980|gb|EFO31203.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp. TrichSKD4] Length = 715 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 188/664 (28%), Positives = 311/664 (46%), Gaps = 74/664 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y R F F +LG Y Y L +G R +E + + VA+ LA + E A+ Sbjct: 91 DAAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAQGD---EDLAM 147 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + S F +TPT N+G + +L SCFL + D++ I + L+K GG Sbjct: 148 RMMDEIISGRFQPATPTFLNAGKKQRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 207 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I G +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 208 VALLLTNIREAGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 267 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + Sbjct: 268 LQFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPHDVEKVYGTSLSQIS 327 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 I + Y D I+ +KISA ++ + + FE+G+P++ F+ N SP G + Sbjct: 328 IT-DKYREMVDDPRIRK-KKISARGFFQTIAEIQFESGYPYVLFEGTANRASPVD--GHI 383 Query: 580 HSSNLCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRT 627 + SNLC+EI +N +S E CNLGS+N+ D L +T+ T Sbjct: 384 NMSNLCSEILQVNEASVFNDDLSYEHLGTDISCNLGSLNIA-----KAMDGGDLGATVET 438 Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 AVR L V +++ ++ ++ N AIGLG M L I Y S E ++ + Sbjct: 439 AVRALTAVSNMSAIDSVPSVRRGNDESHAIGLGQMNLHGYLARERIHYGSEEGIDFTNIY 498 Query: 687 MEFISFHAISASVELAQERGAYSSFKG---SLWDQGVFP--------IDSIGLLAEVRDE 735 +++H + AS +LA+E+G SSFKG S + G F + + +A + + Sbjct: 499 FYAVAYHCLRASNKLAREQG--SSFKGFEKSRYADGSFFDKYIENDWMPATERIANLFET 556 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 ++ + W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 557 AGISLPTCDDWQALKEAVQRDGLYNRNLQAVPPTGSISYINNSTSSIHP----------- 605 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +V++++ R E I + Y + N D+L + A+EI P Sbjct: 606 ----------IVSKIEIRK---EGKIGRVYYPAAYMDN-----DNLD-YYQDAYEIGPEK 646 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 647 IIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLRQ-MALEGT 705 Query: 915 TLKG 918 ++G Sbjct: 706 EVQG 709 >gi|240169273|ref|ZP_04747932.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium kansasii ATCC 12478] Length = 696 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 164/620 (26%), Positives = 265/620 (42%), Gaps = 84/620 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHF 351 + +L +RY L G E R A +A E E + A F LL + F Sbjct: 118 VMVLRERYLLRDARGRPTESTGEMMDRTARCVAAAEDEYRTGSSAQWAERFATLLRNLEF 177 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT L+ CF+ V D L IF L + A + + GG G ++ VR G Sbjct: 178 LPNSPTLMNAGTDLGLLAGCFVLPVEDSLRSIFATLGQAAEVQRAGGGTGYTFSRVRPAG 237 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + T G + G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + Sbjct: 238 DRVASTGGTASGPMSFLRLYDTAADVVSMGGRRRGACMAVLDASHPDICDFISAKAESTS 297 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 TH N + + D F++ V + L +P Sbjct: 298 --HLTH-FNLSVGVGDAFLRAVERGGAHRLVNPRTG------------------------ 330 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 K ++ A L+ + G P + F D N +P G + ++N C E+ L Sbjct: 331 ---KTVARMPAAELFDAICQAAHACGDPGLVFLDTINRANPVPARGRIEATNPCGEVPLL 387 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 CNLGSINL N D+D+L + AVR LD+VID++ + + ++ Sbjct: 388 PYES----CNLGSINLARMITNGHLDWDRLGAVTEVAVRFLDDVIDVSRYPFPELAEATR 443 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R IGLG+MG L L IPY S E V +A + M I HA AS LA++RG++ +F Sbjct: 444 ASRKIGLGIMGLAELLASLGIPYDSVEGVRLAGQVMRRIQRHAHLASRRLAEDRGSFPAF 503 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 S + V+ RN+ ++APT T Sbjct: 504 ADS------------------------------------RLVRFGPRRNAQVTSVAPTGT 527 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I G + I+P + + ++ + VN + + + + +++++ G + Sbjct: 528 ISLIAGTTAGIEPMFAIAFTRAIVGRQLLEVNPCFDRLARDQGFYRDELVAEIA-QRGGV 586 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FI 888 R+P +L+ TA EI P W + + Q+ +D A S + L P+ +D + Sbjct: 587 RGYPRLPAELRAAFPTAAEIAPQWHLRMQAAVQRHVDAAVSKTVNL--PAAATVDDVRAV 644 Query: 889 YRQAWLMGLK--TTYYLRSR 906 Y AW +K T Y SR Sbjct: 645 YLSAWRAKVKGITVYRYGSR 664 Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 TV R + I +E + D VE L ++G + R Y++YR+ R+++RA ++ Sbjct: 49 TVARAVADTLGPRIASVERVGDFVEARLGEAGLDDVARAYIIYRQRRAELRAGKA 103 >gi|256832971|ref|YP_003161698.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia denitrificans DSM 20603] gi|256686502|gb|ACV09395.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia denitrificans DSM 20603] Length = 705 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 193/664 (29%), Positives = 296/664 (44%), Gaps = 81/664 (12%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340 D Y F FE +LG Y Y L +G R + F RV M L L + + E A+ Sbjct: 81 DAAYAMKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLADGD-ETLAL 137 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + + S F +TPT NSG + + SCFL + D++ I + L+K GG Sbjct: 138 QLVDEIISGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIARGVNSALQLSKRGGG 197 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 198 VALLLSNLREFGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 257 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F Sbjct: 258 MRFLDTKRENADEKVRIKTLSIGVVIPDITFELAKKNEDMYLFSP---YDVERIYGKPFA 314 Query: 520 IA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y D G I+ KI A ++ + + FE+G+P++ F+D N +P + G Sbjct: 315 DVNVSELYHEMVDDGRIRK-TKIKARDFFQTIAELQFESGYPYVMFEDTVNKSNPIK--G 371 Query: 578 VVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFDYDKLAST 624 + SNLC+EI L S+ T CNLGS+N+ D L +T Sbjct: 372 KITHSNLCSEI-LQVSTPSTYNDDLSYKEIGRDISCNLGSLNIA-----KAMDGGNLGAT 425 Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + TA+R L V D + ++ + N AIGLG M L HI Y S E ++ Sbjct: 426 VDTAIRALTAVSDQTSIDSVPSIRHGNELGHAIGLGQMNLHGFLAREHIHYGSEEGIDFT 485 Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAE-----VRD--- 734 +++HAI AS +LA ERG A+ F+ S + G + + E V+D Sbjct: 486 SIYFYAVAYHAIKASNQLAIERGRAFGGFEDSTYASGEYFDKYTNRVWEPTTQRVKDLFE 545 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KS 793 + + ++ W ELKK V G+ N N A+ PT +I+ I + SI P + + K Sbjct: 546 KFGIAIPTQDDWRELKKSVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPIVSKIEIRKE 605 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G ++ NE N+E D A+EI Sbjct: 606 GKIGRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGY 634 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR----SA 908 ++++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 635 EKIVDTYAAATEHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQLALTG 694 Query: 909 TSVE 912 T VE Sbjct: 695 TEVE 698 >gi|326570478|gb|EGE20518.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis BC8] Length = 758 Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 182/676 (26%), Positives = 300/676 (44%), Gaps = 53/676 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ +I Sbjct: 7 IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H +++ E Sbjct: 67 AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114 Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K +L + +D + L + + + RD Y ++ + +Y + + E PQ Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQ- 172 Query: 320 FFMRVAMGLAL----KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 F+ V MG+ L + ++ FY+ S+F+ TP + SG R P Q SSC L Sbjct: 173 -FLYVLMGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVL 229 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D+L I G+G + +R LG+ I G + G IPF K+ Sbjct: 230 VECGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQA 289 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++VE L L+ N G + R M+ I R+ Sbjct: 290 AVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARL 349 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L++ + + FE Y YE AD K RK+ A L+ ML Sbjct: 350 IKGTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLML 405 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N E A+C Sbjct: 406 QERASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCT 465 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L +INL D ++ A I VR LD ++D + + AKK + R +G+G++ Sbjct: 466 LSAINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVI 520 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ Sbjct: 521 NYAYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGIL 580 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID+ + D + L W+ L+ +K G+RNS A+ P+ T + I + Sbjct: 581 PIDT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNG 636 Query: 782 IDPSYQNLYVKSNMSG 797 I+P + +K++ G Sbjct: 637 IEPPRGLVSIKASKDG 652 >gi|326804584|ref|YP_004327455.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella phage Vi01] gi|301795234|emb|CBW37952.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella phage Vi01] Length = 758 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 207/808 (25%), Positives = 351/808 (43%), Gaps = 91/808 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ DG+ + F+ ++L ++E AC GL+ VS V + + D + ++ +I Sbjct: 2 INIIKRDGSSVPFDIEKLHTVLERACEGLEGVSVSEVEAASKIQFTDNMKTERIQDIIIQ 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ TLI E PNY V AR LR+ V+ YK P H + + F + I++G Sbjct: 62 AAATLISVEKPNYQYVAARLKSYDLRK-VVYGRYKPP-----HLL-----DIFAKNIKQG 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS----RIEMPQA 319 V R E + L + ++RD F + + L +Y L + E PQ Sbjct: 111 VYDREFLELYTKEEFEELNTVINHKRDKNFTWAAMGQLTQKYLLRDRSADSKVYYETPQV 170 Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374 +M +AM L +KE R +FY S+ F TP + SG R P Q SSC L Sbjct: 171 MYMAIAMAL-FSAWDKETRLTMVKKFYEYASTGKFSLPTPIM--SGVRTPTRQFSSCVLI 227 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I + G+G D +RG+G+ I G++PF+K Sbjct: 228 KTGDTLDSINATAKSIVDYVSKRAGIGFDVGAIRGIGSPIRKGEMVHTGLVPFIKYLTGA 287 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R G+ Y+ WH ++ + L+ N G + R ++ I + +R+ Sbjct: 288 LKSCSQGGIRGGSATCYIPIWHYQFDDVVVLKNNRGLEENRERRIDYGIQINRVMFERLV 347 Query: 495 QNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 LF P + D+++ + + F Y+N + AD G ++ +K++A +++ +L Sbjct: 348 NKQPLYLFDPKDNRDMYEAFFADVDKFRTLYDNMVKAADAGLVRA-KKMNAEEVFQMLLD 406 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 +TG +I F D N SP ++ ++SSNLC EI L + A+C L Sbjct: 407 QRSDTGRIYIAFVDHMNQYSP-FNLDTIYSSNLCLEIALPTREFQQYDDEEGRIALCTLA 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S NL A D ++ V LD +++ + +A+ + +R +G+G++ Sbjct: 466 SFNLTAF-----EDPTEMEDVAYVLVSALDMLLEYQDYPARQARLAVEEYRPLGIGVVNV 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Y SP +E+ D+ M + F+ + AS LA + GA K ++ G Sbjct: 521 AHFFAKNFTGYGSPVGLELLDKWMAHLHFYLVKASNRLAMKFGACK--KETIHRSGKITA 578 Query: 724 D----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D + +L + M L WD LK ++ G+RN+ +AIAPT + + + + Sbjct: 579 DLQPLPLDILPNGKKPEGM--AYGLDWDGLKDSLRCHGIRNATLLAIAPTESSSQVLNAT 636 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +K + G + + D+ + DLK++ I D Sbjct: 637 NGIEPPKGLISIKGSKDGVYKQIVP---------DVETLGPLYDLKWNLSCI-------D 680 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQA---- 892 LK +A+ Q+W+DQ+ S+N + D P GK + Q Sbjct: 681 YLK----------------TAAVAQRWVDQSISVNTHYDPEKFPDGKIPRSLMMQDILSF 724 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVD 920 ++ G KT YY + + S E LK V+ Sbjct: 725 YMWGGKTLYY--NTNKDSKEDEELKQVE 750 >gi|269121364|ref|YP_003309541.1| ribonucleoside-diphosphate reductase, subunit alpha [Sebaldella termitidis ATCC 33386] gi|268615242|gb|ACZ09610.1| ribonucleoside-diphosphate reductase, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 696 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 164/596 (27%), Positives = 282/596 (47%), Gaps = 64/596 (10%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +++E+ +L + + +TPT NSG R +L SCFL + D+L GI A+ L+ Sbjct: 132 QSLEYAEMLINQEYQPATPTFLNSGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSI 191 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +RG G I G G++ GV+P +K+ D NQ G+R GA YL +H Sbjct: 192 GGGVALNLSKLRGRGESIKGVEGRASGVLPIMKILEDIFSYANQLGQRAGAGAVYLNVFH 251 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+EEFLD +K D++ R ++ IPD FM+ ++ + +F V + Y Sbjct: 252 SDIEEFLDCKKINVDEKVRIKSLSIGVIIPDKFMELAEKDEPYYVFHAHTVFQEYGKYLD 311 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 + ++ E YE D +K +K++A L K+ E+G+P++ FKD N + + Sbjct: 312 DMDMN-EMYEELVDNPNVKK-KKLNARHLLVKIAQTQKESGYPYLFFKDNANNEHALKDI 369 Query: 577 GVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLAST 624 G V SNLCTEI + + EE + CNLGS+N++ N ++ Sbjct: 370 GEVKFSNLCTEIMQLSEVSDIGTYYEEDTIRRGISCNLGSLNIVTVMENK-----RIKEA 424 Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++TA+ L V D+ N + KK+N ++GLG M I Y S EA++ Sbjct: 425 VKTAMESLTMVSDLTNIDMVPSIKKANEELHSVGLGAMNLHGFFAKNFIMYESREALDFC 484 Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF--------PIDSIGLLAEVRD 734 + +++++I S+E+A++R + F+ S + +G + + + E+ D Sbjct: 485 NVFFMIVNYYSIEKSMEIARDRNKRFKDFEKSEYAKGTYFDKYTEHEYMPKTEKVKELFD 544 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++ ++ W+ LK +V GM ++ MAIAP + + I + S+ P Sbjct: 545 --GIHIPTKEDWEILKGQVMKNGMYHAYRMAIAPNQSTSYILSSTASVMP---------- 592 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +V+ ++ R+ D + Y + +D + +A+++D Sbjct: 593 -----------IVDTIEVREYGDSTTFYPMPY----------LTNDNYFFYKSAYDMDQK 631 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSAT 909 LI+ S Q+ +DQ S LY + + L Y A MGLK+ YY R+R AT Sbjct: 632 SLIKLISVIQRHVDQGISTILYTNSSDNTRDLAKYYVYAHKMGLKSLYYTRTRKAT 687 >gi|290473789|ref|YP_003466663.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus bovienii SS-2004] gi|289173096|emb|CBJ79869.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus bovienii SS-2004] Length = 763 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 188/676 (27%), Positives = 298/676 (44%), Gaps = 53/676 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +V A GL++VS V + YDG+ +D+ +I Sbjct: 5 LLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTADIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y + AR + LR++ Y + + H+ + R + G Sbjct: 65 AAADLISGDAPDYQYLAARLAIFHLRKKA----YGQFEPPALHD-------HVVRMVNLG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + L E + + + + + RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDKHLLEDYSKEEFEQMDSFINHLRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L KE R FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACL-FSTYPKETRLSYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRDGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQAD-RGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + EFE Y YE R E +I AV L+ M+ Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYESDVTIRKE-----RIKAVELFSLMMQE 405 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V V SNLC EI L N + E A+C L Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPMNNINDENGEIALCTLS 465 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + NL A NN +L AVR LD+++D + I AK+ + R +G+G++ F Sbjct: 466 AFNLGA--INNL---TELEELAELAVRALDSLLDYQDYPIIAAKQGSMGRRTLGIGVINF 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PI Sbjct: 521 AYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEKGACPWFGETTYAQGILPI 580 Query: 724 DSIG--LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D+ L R+ L M+ W+ L+ ++ G+RNS A+ P+ T + I + Sbjct: 581 DTYKKTLDTLTREPLHMD------WETLRNDIRQHGLRNSTLSALMPSETSSQISNATNG 634 Query: 782 IDPSYQNLYVKSNMSG 797 I+P + +K++ G Sbjct: 635 IEPPRGYISIKASKDG 650 >gi|324014405|gb|EGB83624.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 60-1] Length = 626 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 190/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A + + + Sbjct: 9 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLAAQLTDEML 65 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 66 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 125 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 126 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 185 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A E Sbjct: 186 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISER 242 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 243 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 299 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 300 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 354 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + H++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 355 TAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 414 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 415 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 474 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 475 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 534 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 535 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 563 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 564 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 620 >gi|262039139|ref|ZP_06012465.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia goodfellowii F0264] gi|261746836|gb|EEY34349.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia goodfellowii F0264] Length = 712 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 167/598 (27%), Positives = 279/598 (46%), Gaps = 68/598 (11%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A+E+ +L + + +TPT NSG R +L SCFL + D+L GI A L+ Sbjct: 148 KAMEYAEMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSGIGYAFDSAMKLSSI 207 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + VR G I G G++ GV+P +K+ D NQ G+R GA YL +H Sbjct: 208 GGGVSINLSKVRARGESIKGVEGRASGVLPIMKIMEDIFSYANQLGQRAGAGAVYLNVFH 267 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ EFLD +K D++ R ++ +PD FM+ ++ F+P V + Y Sbjct: 268 SDINEFLDCKKINVDEKIRIKSLSIGVIVPDKFMELAKEDEICYTFNPHTVFLEYGQYLD 327 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E ++ E YE+ D +K +KI+A L K+ E+G+P++ FKD N + + Sbjct: 328 EMDMN-EMYEKLVDNPNVKK-KKINARELLIKISQTQKESGYPYLFFKDNANKEHALKEI 385 Query: 577 GVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLAST 624 G V SNLCTEI +N EE + CNLGS+N++ NN ++ Sbjct: 386 GNVKFSNLCTEIMQLSEVSDINPYFEEDTIRRGISCNLGSLNIVTVMENN-----RIREA 440 Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 R A+ L V D+ N + KK+N ++GLG M L I Y S EA++ Sbjct: 441 TRAAIDSLTTVSDLTNIDIVPSIKKANEELHSVGLGAMNLHGFLAKNFIMYESKEALDFC 500 Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG----------VFPIDSIGLLAEV 732 + ++++++ S+E+A+ERG + F S + G FP + E+ Sbjct: 501 NVFFMMMNYYSLERSMEIARERGEVFKDFDKSEYANGNYFNKYIEKSYFP--QTEKIKEL 558 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D + + ++ W +LK+ V G+ N+ MAIAP + + I + S+ P Sbjct: 559 FDGIYV--PTKEDWAKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNSTASVMP-------- 608 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +V+ ++ R+ D + Y + +D + +A+++D Sbjct: 609 -------------IVDTIEVREYGDSTTFYPMPY----------LTNDNYFFYKSAYDMD 645 Query: 853 PMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +++ S Q+ +DQ S L+ + + L +Y +GLK+ YY R+R AT Sbjct: 646 QKNILKLVSVIQRHVDQGISTILFNKSTDTTRDLAKLYIYGHRLGLKSLYYTRTRKAT 703 >gi|326560442|gb|EGE10824.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 7169] gi|326565823|gb|EGE15985.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis BC1] Length = 758 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ +I Sbjct: 7 IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H +++ E Sbjct: 67 AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114 Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K +L + +D + L + + + RD Y ++ + +Y + + E PQ Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V M L + ++ FY+ S+F+ TP + SG R P Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I G+G + +R LG+ I G + G IPF K+ Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L++ + + FE Y YE AD K RK+ A L+ ML Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E A+C L Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 +INL D ++ A I VR LD ++D + + AKK + R +G+G++ + Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PI Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPI 582 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D + L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + +K++ G Sbjct: 639 PPRGLVSIKASKDG 652 >gi|300990602|ref|ZP_07179252.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] gi|300305719|gb|EFJ60239.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] Length = 701 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 194/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + H++ + N AIGLG M L Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|293394771|ref|ZP_06639062.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera DSM 4582] gi|291422722|gb|EFE95960.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera DSM 4582] Length = 693 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 185/679 (27%), Positives = 307/679 (45%), Gaps = 86/679 (12%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + Y + F FE +LG Y Y L +G R +E + VA+ LA Sbjct: 60 DFPFIKQLFKQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLAAG 119 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + + VE + S F +TPT NSG R +L SCFL + D++ I A+ Sbjct: 120 DRQLAQDLVE---EMISGRFQPATPTFLNSGKRQRGELVSCFLLRIEDNMESIGRAVNSA 176 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V + Sbjct: 237 YLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVERV 296 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + + ++ E Y D I+ R I+A ++ + + FE+G+P++ F+D N Sbjct: 297 YGMPFSDISVS-EKYREMVDDKRIRKSR-INARDFFQVLAEIQFESGYPYMMFEDTVNRE 354 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P G ++ SNLC+EI +N +S+ + CNLGS+N+ D Sbjct: 355 NPI--AGRINMSNLCSEILQVNRASKYHDDLGYAQVGKDISCNLGSLNIA-----KTMDA 407 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + TA+R L V ++ + ++ + N RAIGLG M L I Y SP Sbjct: 408 ADFGKAVNTAIRALTAVAEMSDIRSVPSIAEGNRASRAIGLGQMNLHGYLARERIYYGSP 467 Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG--------- 727 E ++ + +++HAI AS +LA ERG A+ F+ S + G + + Sbjct: 468 EGIDFTNIYFYTVAYHAIRASNQLAIERGNAFDGFEHSAYASGDYFAKYVDRQWQPQTER 527 Query: 728 ---LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L AE E+ ++ W L++ V G+ N N A+ PT +I+ I + SI P Sbjct: 528 VRQLFAEAGVEIP----TQEQWLALRQSVMLHGLYNQNLQAVPPTGSISYINNSTSSIHP 583 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDD 840 +V+ ++ R +G IG + + +D Sbjct: 584 ---------------------IVSRIEIR-------------KEGKIGRVYYPAPYMTND 609 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 + A++I P +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 610 NLDYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKT 669 Query: 900 TYYLRSRSATSVEKSTLKG 918 YY+R R ++E + ++G Sbjct: 670 IYYIRLRQ-MALEGTEVQG 687 >gi|160931914|ref|ZP_02079307.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753] gi|156869251|gb|EDO62623.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753] Length = 812 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 176/625 (28%), Positives = 290/625 (46%), Gaps = 87/625 (13%) Query: 298 LQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFH 350 L +L RY + + G IE + F RVA +A + + E A FY ++++ Sbjct: 67 LTVLERRYLIKNGEGVVIETVEELFRRVAGAIAASDRRYDENADCEALADSFYRMMTNLE 126 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ V D + GIF +++ A++ K GG G ++ +R Sbjct: 127 FLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFETIKQAALIHKSGGGTGFSFSRLRPC 186 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G+ ++ T G + G I F+KV N AV QGG R+GA L H D+ EF+ + N Sbjct: 187 GSAVNSTGGVASGPISFMKVFNMATEAVKQGGTRRGANMGILRVDHPDIMEFIHCKTNN- 245 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + + N + + + FM V GK++E+ D Sbjct: 246 ---KEITNFNISVGLTEKFMNAVEA-------------------GKDYELV--------D 275 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +V ++A ++ ++ + G P I F D N + G + S+N C E L Sbjct: 276 PHGGRVTGTLNAREVFECIVDAAWHNGEPGIIFLDRLNRDNVVPKAGEIESTNPCGEQPL 335 Query: 591 NSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 CNLGSINL FD+DKL +T + AV LDNVID N + +++ Sbjct: 336 LPYES----CNLGSINLTKMLREENGVYSFDWDKLKATAKKAVHFLDNVIDANKYPLKEI 391 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 R +GLG+MG+ AL L IPY S +AV +A+ M ++ S ELA+ RG Sbjct: 392 DFMTKQTRKVGLGVMGWADALLRLKIPYNSEQAVRLAETVMRAVTEAGREESRELAKARG 451 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + F+ S DQ LP RN+ I Sbjct: 452 TFPLFQESTLDQ------------------------ELP------------QRNATVTTI 475 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLK 825 APT T++ + S ++P + +Y+++ M G + VN L L++R L+ + ++ + Sbjct: 476 APTGTLSLLASCSSGVEPIFGYVYIRNIMDGTEMIEVNPILREVLEERGLYSDELMKKIA 535 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKK 884 GS+ IE IP++++++ +A E+ P + I + Q+ D A S + + + + ++ Sbjct: 536 -KQGSLEGIEEIPEEIRRVFVSAHEVSPEFHIRMQAAFQRHTDNAVSKTVNFCNSATREE 594 Query: 885 LDFIYRQAWLMGLK--TTYYLRSRS 907 + +Y+ A+ +G K T Y SRS Sbjct: 595 VAEVYKLAFRLGCKGVTIYRDGSRS 619 >gi|301019060|ref|ZP_07183271.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] gi|300399413|gb|EFJ82951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] Length = 701 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 191/679 (28%), Positives = 308/679 (45%), Gaps = 74/679 (10%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIF 384 M + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALMLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 178 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 179 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 238 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFSP Sbjct: 239 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP 298 Query: 505 DEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D+ +YGK F +IA + + E + I+A ++++ + FE+G+P+I + Sbjct: 299 ---YDVERVYGKPFADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMY 355 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 356 EDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH- 411 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 412 ---TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLARE 468 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 469 GIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGN 528 Query: 727 -----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 529 WQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 588 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + + K +G F+ NE + A+ D Sbjct: 589 IHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD----------------- 624 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 625 -------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT 677 Query: 900 TYYLRSRSATSVEKSTLKG 918 YY+R R ++E + ++G Sbjct: 678 LYYIRLRQ-MALEGTEIEG 695 >gi|319408169|emb|CBI81822.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella schoenbuchensis R1] Length = 711 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 195/676 (28%), Positives = 308/676 (45%), Gaps = 74/676 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMP 317 IEEG + L E + DF V Y F F +LG Y Y L +G R Sbjct: 64 IEEGYYEKALFE-LYDFSFVKKLFKHAYAFKFRFPTFLGAFKYYTSYTLKTFDGKR--YL 120 Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + + RV + +AL + K E + + + F +TPT N+G + +L SCFL Sbjct: 121 ERYEDRVCL-VALYLAQGNKTLAECLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 179 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ D Sbjct: 180 VEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDAF 239 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ FLD ++ D++ R ++ IPD+ + Sbjct: 240 SYANQLGARQGAGAVYLHAHHLDIMTFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 299 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFSP D+ + GK F +I+ E+Y D +I+ +KISA ++ + + Sbjct: 300 NEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNSKIRK-KKISARVFFQTLAEIQ 355 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-ETAV----------CN 601 FE+G+P++ F+D N +P G ++ SNLC+EI +N +SE ET + CN Sbjct: 356 FESGYPYLLFEDTANRTNPI--AGRINMSNLCSEILQVNEASELETDLTYRTIGNDISCN 413 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ ++ F + T+ TAVR L V D+ N + K N AIGLG Sbjct: 414 LGSMNIAKAMESSDFGW-----TVETAVRALTAVSDMSNIACVPSIAKGNSESHAIGLGQ 468 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L I Y SPEA++ + +++H + AS +A+ER + F+ S + G Sbjct: 469 MNLHGFLARERIYYGSPEAIDFTNIYFYTVAYHVLRASNLIARERQKVFVGFEKSAYADG 528 Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I L+ E+ + + ++ W ELKK V G+ N N AI PT + Sbjct: 529 SFFTKYIETEWKPQFPLVQELFERNNIVIPNQEDWKELKKLVIEHGLYNRNLQAIPPTGS 588 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 589 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 624 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 625 DNTNL------DFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDVNCAQI 678 Query: 891 QAWLMGLKTTYYLRSR 906 AW G+K+ YY+R R Sbjct: 679 YAWKKGIKSVYYIRLR 694 >gi|260904341|ref|ZP_05912663.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium linens BL2] Length = 693 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 182/663 (27%), Positives = 293/663 (44%), Gaps = 79/663 (11%) Query: 276 FDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET 333 FD + + Y F F+ +LG Y Y L +G R + F RV M Sbjct: 61 FDFIEELSKHAYSAKFRFQTFLGAFKFYTSYTLKTFDGKR--YLERFEDRVVMVALFLAR 118 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAM 392 E A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 119 GDETLAKQLVDEIIHGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQ 178 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 179 LSKRGGGVAFALTNIRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 238 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ +FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 239 HAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSP---YDVER 295 Query: 513 LYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YG F E YE D IK KI+A ++ + + FE+G+P++ F+D N Sbjct: 296 VYGMPFSDVNVTEKYEEMVDNAAIKK-NKINAREFFQTLAEIQFESGYPYVMFEDTVNKA 354 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDY 618 +P G + SNLC+EI S + CNLGS+N+ + F Sbjct: 355 NPID--GKIIMSNLCSEILQVSEPSKYDSDLGYDVVGKDISCNLGSLNIALTMDSTDF-- 410 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 TI TA+R L V + + ++ + N AIGLG M L HI Y S Sbjct: 411 ---GQTIETAIRGLTAVAETSDIQSVPSIARGNDMSHAIGLGQMNLHGYLAREHIYYGSD 467 Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSI-----GL 728 E ++ + +++H + AS+E+A+ER A++ F+ S + G + D + Sbjct: 468 EGLDFTNMYFYTVAYHCVRASMEIAKERKTAFAGFERSKYASGEYFDKYTDEVWEPRTRR 527 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 +AE+ E ++ ++ W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 528 VAEMFTEAGVHIPTQDDWRELKAAVAEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASK 587 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844 + ++ +G IG + + +D K Sbjct: 588 VEIRK----------------------------------EGKIGRVYYPAPFMDNDNLKY 613 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A+EI +I++ + K +DQ SL L ++D + + ++ AW G+KT YY+ Sbjct: 614 YQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFMDTATTRDINKAQIYAWRKGIKTIYYI 673 Query: 904 RSR 906 R R Sbjct: 674 RLR 676 >gi|237729634|ref|ZP_04560115.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] gi|226908240|gb|EEH94158.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] Length = 714 Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 196/666 (29%), Positives = 311/666 (46%), Gaps = 78/666 (11%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340 D + F F+ +LG Y Y L +G R + F RV M L L + + E A+ Sbjct: 90 DHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFEDRVTMVALTLAQGD-ETLAM 146 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + + S F +TPT N G + +L SCFL + D++ I A+ L+K GG Sbjct: 147 QLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGG 206 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 207 VAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDI 266 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ K +NA LFSP D+ +YGK F Sbjct: 267 LRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAKENADMALFSP---YDVERIYGKPFG 323 Query: 519 EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 +IA E Y E AD K + I+A ++++ + FE+G+P+I F+D N +P Sbjct: 324 DIAVSERYDELLADERVRKKY--INARDFFQRLAEIQFESGYPYIMFEDTVNSANPI--A 379 Query: 577 GVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLAST 624 G ++ SNLC+EI +NS+S CNLGS+N +AH D T Sbjct: 380 GRINMSNLCSEILQVNSASTYDENLNYAQTGHDISCNLGSLN-IAH----TMDSPDFGRT 434 Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + TAVR L V D+ + ++ + N AIGLG M L I Y SPE ++ Sbjct: 435 VETAVRGLTAVSDMSHIRSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFT 494 Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA 737 + I++HA++ S+++A+ERG ++ FK S + G + D +VR A Sbjct: 495 NIYFYTITWHALNTSMKIARERGQTFAGFKQSRYASGEYFNQYLQGDWQPKTDKVRALFA 554 Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KS 793 + +R W +L++ V G+ N N A+ PT +I+ I + SI P + + K Sbjct: 555 ASGITLPTREMWSQLREDVMHYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKE 614 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +G F+ NE + A+ D A+EI P Sbjct: 615 GKTGRVYYPAPFMTNE-------NLALYQD------------------------AYEIGP 643 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E Sbjct: 644 QKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALE 702 Query: 913 KSTLKG 918 + ++G Sbjct: 703 GTEIEG 708 >gi|191171419|ref|ZP_03032968.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] gi|190908353|gb|EDV67943.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] Length = 714 Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 194/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D++ H++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|218690803|ref|YP_002399015.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ED1a] gi|218428367|emb|CAR09296.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli ED1a] Length = 714 Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 194/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D++ H++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|15803195|ref|NP_289227.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 EDL933] gi|15832792|ref|NP_311565.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|168750918|ref|ZP_02775940.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168755420|ref|ZP_02780427.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168762470|ref|ZP_02787477.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168768766|ref|ZP_02793773.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168774793|ref|ZP_02799800.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168778657|ref|ZP_02803664.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168800560|ref|ZP_02825567.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|195938429|ref|ZP_03083811.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208808050|ref|ZP_03250387.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208813711|ref|ZP_03255040.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208819046|ref|ZP_03259366.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209398305|ref|YP_002272141.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|217327374|ref|ZP_03443457.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254794622|ref|YP_003079459.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|291284008|ref|YP_003500826.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|12517114|gb|AAG57785.1|AE005496_8 ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. EDL933] gi|13363009|dbj|BAB36961.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|187769664|gb|EDU33508.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188014971|gb|EDU53093.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|189003146|gb|EDU72132.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189357239|gb|EDU75658.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189361996|gb|EDU80415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189367236|gb|EDU85652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189377190|gb|EDU95606.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|208727851|gb|EDZ77452.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208734988|gb|EDZ83675.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208739169|gb|EDZ86851.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209159705|gb|ACI37138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209762248|gb|ACI79436.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762250|gb|ACI79437.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762252|gb|ACI79438.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762254|gb|ACI79439.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762256|gb|ACI79440.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|217319741|gb|EEC28166.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254594022|gb|ACT73383.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|290763881|gb|ADD57842.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|320189006|gb|EFW63665.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC1212] gi|320646029|gb|EFX15006.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320651329|gb|EFX19760.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320656720|gb|EFX24608.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662263|gb|EFX29660.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320667314|gb|EFX34272.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|326338610|gb|EGD62436.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1044] gi|326342862|gb|EGD66630.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1125] Length = 714 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 192/680 (28%), Positives = 313/680 (46%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPV--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 G + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTGKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|326561646|gb|EGE11983.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 103P14B1] gi|326573452|gb|EGE23420.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 101P30B1] Length = 758 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ +I Sbjct: 7 IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H +++ E Sbjct: 67 AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114 Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K +L + +D + L + + + RD Y ++ + +Y + + E PQ Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V M L + ++ FY+ S+F+ TP + SG R P Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I G+G + +R LG+ I G + G IPF K+ Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L++ + + FE Y YE AD K RK+ A L+ ML Sbjct: 352 GTDITLFSPSDVPGLYEAFFANQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E A+C L Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 +INL D ++ A I VR LD ++D + + AKK + R +G+G++ + Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PI Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D + L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + +K++ G Sbjct: 639 PPRGLVSIKASKDG 652 >gi|326575650|gb|EGE25573.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis CO72] Length = 758 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ +I Sbjct: 7 IKVTKRDGRLEPINLDKIHRVIAWAAKDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H +++ E Sbjct: 67 AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114 Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K +L + +D + L + + + RD Y ++ + +Y + + E PQ Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V M L + ++ FY+ S+F+ TP + SG R P Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I G+G + +R LG+ I G + G IPF K+ Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L++ + + FE Y YE AD K RK+ A L+ ML Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E A+C L Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 +INL D ++ A I VR LD ++D + + AKK + R +G+G++ + Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PI Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D + L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + +K++ G Sbjct: 639 PPRGLVSIKASKDG 652 >gi|91793307|ref|YP_562958.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella denitrificans OS217] gi|91715309|gb|ABE55235.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella denitrificans OS217] Length = 762 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 206/788 (26%), Positives = 342/788 (43%), Gaps = 97/788 (12%) Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-P 214 S + ++ ++ + GL++VS V ++ +DG+ + +I ++ LI + P Sbjct: 16 SIDLDKIHRVITWSTKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPDSP 75 Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y V AR + LR++ ++ P H R +E G + + Sbjct: 76 DYQFVAARLAVFHLRKKAYGQ-FEPPSLVDH----------VTRLVELGKYDKNILTDYT 124 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK- 331 +L + + + RD F Y ++ L +Y + + E Q ++ VA L + Sbjct: 125 REELEVMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACLFARY 184 Query: 332 -ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQ 388 + K +FY+ S+F TP + +G R P Q SSC L D L I Sbjct: 185 PAETRLKYIKDFYDATSNFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATAS 242 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 G+G + +R LG+ I G G +PF K + +QGG R GA Sbjct: 243 SIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAA 302 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 + WH++VE L L+ N G D R ++ + L +R+ + +LFSP +V Sbjct: 303 TLFYPIWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGQDISLFSPSDVP 362 Query: 509 DLHDLYGK---EFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFK 564 ++D + EFE Y YE+ + ++ RK + AV L+ M+ TG +I Sbjct: 363 GMYDAFFADQVEFERLYLQYEQ-----DTRIRRKTLKAVELFSLMMQERASTGRIYIQNV 417 Query: 565 DPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQ 615 D CN SP V + SNLC EI L + E A+C L ++NL A Sbjct: 418 DHCNTHSPFDPSVAPIKQSNLCLEIALPTKPLKNIDDPEGEIALCTLSALNLGA-----I 472 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +L AVR LDN++D + I A+ + R +G+G++ F + L Y+ Sbjct: 473 KDLSELEPLADLAVRALDNLLDYQDYPIISAQLGSMNRRTLGIGVINFANYLAKNGKKYS 532 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--GLLAEVR 733 A + + E I F+ + AS+ LA+E+GA F + + +G+ PID+ L A Sbjct: 533 DGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSKGILPIDTYKRDLDAICS 592 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + L M+ W+ L+K + G+RNS A+ P+ T + I + I+P + VK+ Sbjct: 593 EPLHMD------WEALRKDILEHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKA 646 Query: 794 NMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G VV F +EL RD ++ ++ ++ +DG Sbjct: 647 SKDGQLKQVVPDF--DEL--RDSYE--LLWNMPNNDG----------------------- 677 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYY 902 ++ QK++DQA S N D PS G+K+ D + A+ +G+KT YY Sbjct: 678 ---YLQLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--GAYKLGVKTLYY 731 Query: 903 LRSRSATS 910 +R S Sbjct: 732 HNTRDGAS 739 >gi|296113066|ref|YP_003627004.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella catarrhalis RH4] gi|295920760|gb|ADG61111.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella catarrhalis RH4] gi|326562609|gb|EGE12920.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 46P47B1] gi|326577114|gb|EGE27008.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis O35E] Length = 758 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ +I Sbjct: 7 IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR+ + ++ P H +++ E Sbjct: 67 AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114 Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K +L + +D + L + + + RD Y ++ + +Y + + E PQ Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ V M L + ++ FY+ S+F+ TP + SG R P Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D+L I G+G + +R LG+ I G + G IPF K+ Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L++ + + FE Y YE AD K RK+ A L+ ML Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603 TG +I D CN SP V + SNLC EI L N E A+C L Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 +INL D ++ A I VR LD ++D + + AKK + R +G+G++ + Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PI Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + D + L W+ L+ +K G+RNS A+ P+ T + I + I+ Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638 Query: 784 PSYQNLYVKSNMSG 797 P + +K++ G Sbjct: 639 PPRGLVSIKASKDG 652 >gi|312262464|gb|ADQ52759.1| NrdA ribonucleotide reductase A subunit [Aeromonas phage PX29] Length = 744 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 179/663 (26%), Positives = 299/663 (45%), Gaps = 44/663 (6%) Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET-ALIFSSRTLI 210 G SF+ ++L I+ A +G + + ++S ++ +G+S D++ A+ F++ + Sbjct: 8 GITESFDKQKLYRIITFATTGTR-IDPIEIMSGIMSSITNGMSTKDIQKLAIKFAADRIS 66 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 ++P+Y V AR + LR++ P H ++ +++G+ L Sbjct: 67 IEQPDYQYVAARLQMYALRKQAYNQF--DPPHLKRHTLEL---------VQDGIYDPDLA 115 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGL 328 D + L N + +ERDF Y G+ ++Y G E PQ +M VAM L Sbjct: 116 TKWTDEEFSELNNYIIHERDFNLAYAGVMQFKEKYLAKDRSTGELYETPQMLYMLVAMCL 175 Query: 329 ALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFG 385 E T++ + FY++ S TP L +G R P Q SSC D+L I Sbjct: 176 HQDEKTDRLAKVKNFYDVTSLGKLSLPTPIL--AGVRTPTRQFSSCVKIESGDELDSINA 233 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 G+G + +R G+ I + G+IPF K + +QGG R Sbjct: 234 TASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQGGVRG 293 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA Y WH++VE+ L L+ N G + R ++ I +F +R+ + TLFSPD Sbjct: 294 GAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKMFWERLKNDDYITLFSPD 353 Query: 506 -EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + +L+DL+ K+ E YE + ++ ++I A ++ TG + F Sbjct: 354 VQNGELYDLFYKDPVKFKELYEMLEEEPFVRK-KRIKASEIFNLFAQERTGTGRIYPMFI 412 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLGSINLLAHFANNQFDY 618 D N +P + + SNLC EI L + S E A+C L + NL A + Y Sbjct: 413 DNVNSATPYKE--PIRQSNLCIEIALPTYPVKRDGSGEIALCTLAAYNLGAIES-----Y 465 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 + + R AVR LDN++D + + +A + RA+G+G+ F L + Y+S Sbjct: 466 EDFLNVARAAVRALDNLLDYQDYPVVQALAAKK-RRALGIGVTNFAYFLAKNFVDYSSGN 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDEL 736 A ++ +ME + F + AS+ELA+ERGA + W G+ PID + V ++L Sbjct: 525 ANKLVHRTMEMMQFANLVASMELAKERGANEWHHKTKWADGLLPIDWYNKNVDNIVPNDL 584 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M+ W+ L+ +K G+RN A P + + I + I+P + K + Sbjct: 585 KMD------WEWLRAEIKKYGLRNDTLSAFMPCESSSQITNSTNGIEPPRALMSTKQSKD 638 Query: 797 GDF 799 G F Sbjct: 639 GVF 641 >gi|327189836|gb|EGE56974.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli CNPAF512] Length = 734 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 189/664 (28%), Positives = 303/664 (45%), Gaps = 81/664 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 102 FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 161 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 162 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 218 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 219 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 278 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP +V ++ Sbjct: 279 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSPYDVERVY 338 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + + E AD K +KI A ++ + + FE+G+P+I F+D N + Sbjct: 339 GVPFTEISVTEKYREMVADARISK--KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRAN 396 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619 P VG + SNLC+EI S + E CNLGS+N+ A A + D+ Sbjct: 397 PI--VGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDTADFG 452 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K TI T++R L V D++ ++ +K N AIGLG M L I Y S E Sbjct: 453 K---TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 509 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIG 727 V+ + +++HAI AS LA ERG ++ F+ S + G + P + G Sbjct: 510 GVDFTNIYFYTVTYHAIRASNLLAVERGQSFKGFENSKYASGDYFDKYTEQEWKP--ATG 567 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + D+ ++ ++ W LK V T G+ N N A+ PT +I+ I + SI P Sbjct: 568 KVQALFDDAGIHIPTQDDWAALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP--- 624 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKK 843 +V++++ R +G IG + + +D Sbjct: 625 ------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLD 653 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT YY Sbjct: 654 YYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWRKGIKTIYY 713 Query: 903 LRSR 906 +R R Sbjct: 714 IRLR 717 >gi|295698299|ref|YP_003602954.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Riesia pediculicola USDA] gi|291157020|gb|ADD79465.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Riesia pediculicola USDA] Length = 764 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 175/667 (26%), Positives = 298/667 (44%), Gaps = 47/667 (7%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 +G L + K+++ ++ + GLQ +S + + Y+ + + +I +S LI Sbjct: 11 NGDLEKIDLKKIKRLITLSADGLQGISISKIQDLSCIQFYNKIQTKLIHQIIIKTSADLI 70 Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 K P+Y ++AR + LR++ + P+ H + +Y R +E+ Sbjct: 71 STKIPDYQYLSARLAISYLRKDAYGE-FNPPKLYQHVKNMVSIGKYDYRLLEDYSVEEF- 128 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMG 327 + M F + + RD F Y ++ L +Y + + G E Q ++ V+ Sbjct: 129 -QKMDQF--------INHLRDMNFCYAAVKQLEGKYLVKDRVTGKIYESAQFLYILVSAC 179 Query: 328 LALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYG 382 L K+ R + FY+ +S+F TP + +G R P Q SSC L D L Sbjct: 180 L-FSIYPKDVRLIYVKRFYDAISTFKISLPTPIM--AGIRTPTRQFSSCVLIECDDSLDS 236 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I G+G + +R +G+ I G IPF K + +QGG Sbjct: 237 INATASSIVKYVSQRAGIGINAGRIRAIGSPIRQGEAFHTGCIPFYKYFQAAVKSCSQGG 296 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R GA + WH++VE L L+ N G + R ++ A I L +R+ + TLF Sbjct: 297 IRGGAATIFYPIWHLEVESLLVLKNNRGVESNRVRHLDYAVQINKLMYERLIRGEEITLF 356 Query: 503 SPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 SP +V DL+ + + FE Y+ YE + + +++ AV L+ KM+ TG Sbjct: 357 SPSDVPDLYSCFFSDQDKFENLYKKYELDQNIRK----KRVKAVDLFSKMMQERSSTGRT 412 Query: 560 WITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAH 610 +I D CN SP + + SNLC E+ L N E A+C L + NL Sbjct: 413 YIQNVDHCNTHSPFDSKIAPIRQSNLCLEVLLPTHPLYNINDQEGEIALCTLSAFNL--- 469 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 ++L VR LD ++D + I AKKS+ + R +G+G++ + L Sbjct: 470 --GEIRSLEELEDLSDLIVRALDALLDYQDYPILAAKKSSISRRTLGIGVINYAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 H+ Y+ A + ++ E I ++ + AS +LA+E+GA S F + + +G+ PID+ Sbjct: 528 HVKYSDSSANNLTHKTFEAIQYYLLKASNQLAKEKGACSWFHHTNYSKGILPIDN---YK 584 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + D L + W L++R+K G+RNS A+ P+ T + I + I+P + Sbjct: 585 KSLDHLT-SEPLHYDWKSLRERIKKYGLRNSTLSAVMPSETSSQISNATNGIEPPRGFMS 643 Query: 791 VKSNMSG 797 +K + G Sbjct: 644 IKVSKDG 650 >gi|86359306|ref|YP_471198.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli CFN 42] gi|86283408|gb|ABC92471.1| ribonucleotide-diphosphate reductase, alpha subunit protein [Rhizobium etli CFN 42] Length = 693 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 188/664 (28%), Positives = 298/664 (44%), Gaps = 81/664 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 61 FNFVRDLFDQAYARQFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 120 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 121 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 177 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 178 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 237 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP +V ++ Sbjct: 238 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSPYDVERVY 297 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + + E AD K +KI A ++ + + FE+G+P+I F+D N + Sbjct: 298 GMPFTEISVTEKYREMVADARISK--KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 355 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + E CNLGS+N+ A + F Sbjct: 356 PV--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAAMDSGDF--- 410 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 TI TA+R L V D++ ++ +K N AIGLG M L I Y S E Sbjct: 411 --GKTIETAIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 468 Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIG 727 V + +++HAI AS LA ERGA + F+ S + G + P + Sbjct: 469 GVNFTNIYFYTVTYHAIRASNLLAVERGASFRGFENSKYASGDYFDKYTEQEWKP--ATE 526 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + D+ ++ ++ W LK V T G+ N N A+ PT +I+ I + SI P Sbjct: 527 KVQALFDKSGIHIPTQDDWVALKTGVMTTGLYNQNLQAVPPTGSISYINHSTSSIHP--- 583 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKK 843 +V++++ R +G IG + + DD Sbjct: 584 ------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTDDNLD 612 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSL-NLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL + + D + + ++ AW G+KT YY Sbjct: 613 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTSFFRDTATTRDINKTQIYAWKKGIKTIYY 672 Query: 903 LRSR 906 +R R Sbjct: 673 IRLR 676 >gi|227496666|ref|ZP_03926942.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM 15434] gi|226833814|gb|EEH66197.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM 15434] Length = 717 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 188/654 (28%), Positives = 291/654 (44%), Gaps = 79/654 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y F F+ +LG Y Y L +G R + F RV+M LAL + + E+ A++ Sbjct: 96 YAHKFRFQTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVSMVALALADGD-EQLALDLV 152 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 153 EEMMTGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVAL 212 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R +GA I +S GV+P +K+ D+ NQ G R+GA YL H D+ F Sbjct: 213 LLTNLREMGAPIKRIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 272 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ IPD+ + LFSP D+ +YG F Sbjct: 273 LDTKRENADEKIRIKTLSLGVVIPDITFELAKNKEPMYLFSP---YDVERVYGVPFSDIS 329 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D I R I A ++ + + FE+G+P++ F+D N +P + G V Sbjct: 330 VTEKYREMVDDPRIHKTR-IDARQFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVI 386 Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI TLN V CNLGS+N+ D TIRTA Sbjct: 387 MSNLCSEILQVSEASTLNEDLSFAHVGKDISCNLGSLNIA-----KTMDSPDFMRTIRTA 441 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 VR L V D ++ ++ + NH AIGLG M L I Y S E ++ + Sbjct: 442 VRGLTAVSDQVDLPSVPSINRGNHESHAIGLGQMNLHGYLARERIFYGSEEGLDFTNVYF 501 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGLLAEVRDEL 736 + + A++A+ ELA ERG ++ F+ S + G F P+ + E+ + Sbjct: 502 ACVLYAALTATNELAVERGESFVGFEDSDYYSGAFFEKYTAQDFLPVTD--KVKELFERS 559 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNM 795 ++ +R W L KR++ GM N N A+ PT +I+ I + SI P + + K Sbjct: 560 SITVPTREDWAALAKRIRETGMYNRNLQAVPPTGSISYINNSTSSIHPIVAKIEIRKEGK 619 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G ++ NE N+E D A+EI P Sbjct: 620 IGRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGPEK 648 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R A Sbjct: 649 IIDTYAVATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWRKGIKTLYYIRLRQA 702 >gi|323359289|ref|YP_004225685.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum StLB037] gi|323275660|dbj|BAJ75805.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum StLB037] Length = 718 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 191/660 (28%), Positives = 298/660 (45%), Gaps = 89/660 (13%) Query: 283 NDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRA 339 ND Y F FE +LG Y Y L +G R + F RV M LAL + + ++ A Sbjct: 95 NDRAYGAKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVVMTALALADGD-QRLA 151 Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 V+ + + S F +TPT N+G + +L SCFL + D++ I + L+K G Sbjct: 152 VQLVDEIISGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARGINSALQLSKRGG 211 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+ + +R GA I +S G+IP +K+ D+ NQ G R+GA YL H D Sbjct: 212 GVALLLSNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPD 271 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + FLD ++ D++ R ++ IPD+ + LFSP D+ +YGK F Sbjct: 272 ILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKNGEDMYLFSP---YDVEKVYGKPF 328 Query: 519 -EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 +I+ E Y D IK KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 329 GDISVTEKYREMVDDPRIKK-TKINAREFFQTLAEIQFESGYPYIMFEDTVNKANPI--A 385 Query: 577 GVVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLAST 624 G ++ SNLC+EI T + +E+ + CNLGS+N+ D L T Sbjct: 386 GRINMSNLCSEILQVNTPTTYNEDLSYDTIGKDISCNLGSMNIAL-----AMDGGDLGLT 440 Query: 625 IRTAVRVLDNVIDINCH--TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + TA+R L + + H ++ + N AIGLG M L H+ Y S E ++ Sbjct: 441 VETAIRAL-TAVSVQSHIASVRSIEDGNDRSHAIGLGQMNLHGYLAREHVYYGSEEGIDF 499 Query: 683 ADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + FHA+ AS LA ERG A+ F+ S + G F + D++ +T Sbjct: 500 TNIYFYTVLFHALRASNRLAIERGTAFDGFENSTYASGEF-------FDKYTDQVWEPQT 552 Query: 742 SR---------LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 ++ +P W ELK V+ G+ N N A+ PT +I+ I + SI P Sbjct: 553 AKAKELFAGVQIPTQDDWRELKASVQAHGIYNQNLQAVPPTGSISYINNSTSSIHPIASK 612 Query: 789 LYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + + K G F+ NE N+E D Sbjct: 613 IEIRKEGKLGRVYYPAPFMTNE-----------------------NLEYYQD-------- 641 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 642 AYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKAQIYAWRKGIKTIYYIRLR 701 >gi|156932795|ref|YP_001436711.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|156531049|gb|ABU75875.1| hypothetical protein ESA_00591 [Cronobacter sakazakii ATCC BAA-894] Length = 706 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 211/757 (27%), Positives = 331/757 (43%), Gaps = 104/757 (13%) Query: 209 LIEKEPNYAKVTA---------RFLLEKLRREV--LTTVYKKPQKAT----HHEMQCLYP 253 +++ P+Y + A R EK R V T + P+ T H + L Sbjct: 1 MLQTPPDYHALNAMLNLYDADGRIQFEKDREAVAAFMTAHVAPRSVTFPDTHARLAYLVS 60 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLAN--DLKYERDFAFE-YLGLQILYDRYFLH-I 309 E Y +E V R +D ++A D + F F+ +LG Y Y L Sbjct: 61 E---GYYDENVLRR--------YDASFVAGLFDEAHRYGFTFKTFLGAWKFYTSYTLKTF 109 Query: 310 NGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-P 366 +G R P M VA+ LA + E A + + + S F +TPT N G + Sbjct: 110 DGKRYLEHFPDRACM-VALTLACGD---ETLARQILDEILSGRFQPATPTFLNCGKKQRG 165 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP Sbjct: 166 ELVSCFLLRIEDNMESIGRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIP 225 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 226 VMKMLEDAFSYANQLGARQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 285 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVAL 545 D+ + NA LFSP D+ +YGK F +I+ Q E R ISA L Sbjct: 286 DITFELAKANAQMALFSP---YDVERIYGKPFGDISVSEMYSQLVEDERIRKRYISAREL 342 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE--------- 595 ++++ + FE+G+P+I F+D N +P G ++ SNLC+EI +NS+S Sbjct: 343 FQRLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYAT 400 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHT 652 CNLGS+N+ AH D T+ AVR L V D++ ++ + N Sbjct: 401 TGHDISCNLGSLNI-AH----TMDSPDFGRTVEVAVRALTAVSDMSHIRSVPSIEAGNAA 455 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSF 711 AIGLG M L I Y SPE ++ + +++HA++ S++LA+ERG + F Sbjct: 456 SHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTVTWHALNTSMKLARERGERFEGF 515 Query: 712 KGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLP----WDELKKRVKTIGMRNSNC 763 + S + G + + + R EL LP W L+ V G+ N N Sbjct: 516 EASRYASGEYFDKYLSQIWTPRTARVAELFARAGITLPTPEMWRALRDDVMRHGLYNRNL 575 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I + SI P + + K G F+ NE Sbjct: 576 QAVPPTGSISYINHATSSIHPIVSKIEIRKEGKIGRVYYPAPFMTNE------------- 622 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881 N+ ++ A+EI P +I++ + + +DQ SL L+ D + Sbjct: 623 ----------NL--------SLYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTAT 664 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + ++ AW G+KT YY+R R ++E + ++G Sbjct: 665 TRDINKAQIYAWKKGIKTLYYIRLRQ-LALEGTEIEG 700 >gi|299779175|ref|YP_003734369.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage IME08] gi|298105904|gb|ADI55548.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage IME08] Length = 755 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 208/798 (26%), Positives = 340/798 (42%), Gaps = 94/798 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G F+++++ ++ C G Q + + E ++ DG++ D++ + Sbjct: 5 MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKSHLRDGMTTKDIQNLTVK 63 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258 + LI +EP+Y V A+ L+ LR+EV +P+ H C+ PE R Sbjct: 64 VAANLISVEEPDYQYVAAKQLMFALRKEVYGQF--EPRSFIDHISYCVNEGKYDPELLSR 121 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 Y E ++ +L + +K+ERDF Y G L ++Y + G E Sbjct: 122 YSAE--------------EITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYET 167 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ F + +G+AL + E R + FY+ +S+ TP + + T Q SSC + Sbjct: 168 PQ--FAIMCIGMALHQEEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVV 225 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R G+ I K GVIPF K Sbjct: 226 IEAGDSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQT 285 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA AY WH++VE L L+ N G D R M+ + DL M+R Sbjct: 286 AVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERF 345 Query: 494 TQNAGWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +N TLFSP E+S +L+ Y ++ + E YE I+ ++I A L+ +T Sbjct: 346 GKNDYITLFSPHEMSGELYHSYFEDQDRFRELYEAAEKDPSIRK-KRIKARDLFELFMTE 404 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSIN 606 T + F D N +P + + SNLC EI + NS E +C L + Sbjct: 405 RSGTARIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSA-- 462 Query: 607 LLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 F + FD+ DK+ VR LDN++D + + +A K+ R +G+G+ + Sbjct: 463 ----FVLDNFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAKK-RRNLGVGVTNY 517 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + L Y +A ++ E E + + I AS++LA+E+G + + W +G PI Sbjct: 518 AAWLASNFASYE--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPI 575 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + D++A W L++ + G+RNS A+ P + + + + I+ Sbjct: 576 D---WYNKKIDQIAAPNYV-CDWTSLREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIE 631 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K + G+F V + N + L+D A K GN K Sbjct: 632 PPRGPVSIKESKEGNFRQV---VPNVEHNQGLYDYAWTLAKK------GN---------K 673 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWL 894 + T I KW+ Q+ S N Y D P GK D +Y W Sbjct: 674 PYLTQVVI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLLY--FWY 720 Query: 895 MGLKTTYYLRSRSATSVE 912 G K YY +R + + Sbjct: 721 YGGKNLYYHNTRDGSGTD 738 >gi|123441278|ref|YP_001005265.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088239|emb|CAL11028.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 693 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 188/690 (27%), Positives = 314/690 (45%), Gaps = 79/690 (11%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 +EEG + + E DF + Y + F F +LG Y Y L +G R +E Sbjct: 46 VEEGYYEKDVLEKY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + + VE + + F +TPT N G + +L SCFL Sbjct: 105 YEDRVCMVALTLAAGNQQVARDLVE---EIITGRFQPATPTFLNCGKKQRGELVSCFLLR 161 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I A+ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 162 IEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 281 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP +V ++ + E ++ E Y D I+ KI A ++ + + FE Sbjct: 282 NEDMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +NS +E + CNLG Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ AH D +I TA+R L V D+ N ++ +K N AIGLG M Sbjct: 398 SLNI-AHI----MDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721 L I Y S EA++ + +++HAI AS +LA ERG+ + F S + G + Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGSHFKGFDQSTYASGHY 512 Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 I ++ + + ++ + W L++ V G+ N N A+ PT +I+ Sbjct: 513 FTKYIEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSIS 572 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P +V+ ++ R +G IG Sbjct: 573 YINHSTSSIHP---------------------IVSPIEIRK-------------EGKIGR 598 Query: 834 I----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + + +D + + A++I P +I++ + + +DQ SL L+ D + + ++ Sbjct: 599 VYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKA 658 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 659 QIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687 >gi|170765802|ref|ZP_02900613.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] gi|170124948|gb|EDS93879.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] Length = 714 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 195/689 (28%), Positives = 315/689 (45%), Gaps = 80/689 (11%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEM 316 Y +EGV L+ DF + A+ + F F+ +LG Y Y L +G R Sbjct: 71 YYDEGV----LNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--Y 122 Query: 317 PQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT 374 + F RV M L L + + E A + + + S F +TPT N G + +L SCFL Sbjct: 123 LEDFADRVTMVALTLAQGD-ETLATQLADEMLSGRFQPATPTFLNCGKQQRGELVSCFLL 181 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 182 RIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDA 241 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 242 FSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAK 301 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +NA LFSP D+ +YGK F +IA Y + + + I+A ++++ + Sbjct: 302 ENAQMALFSP---YDVERVYGKPFADIAISEYYDELVANKHIRKKYINARDFFQRLAEIQ 358 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCN 601 FE+G+P+I ++D N +P G ++ SNLC+EI +NS+S CN Sbjct: 359 FESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASAYDENLDYARTGHDISCN 416 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N +AH D A T+ TA+R L V D+ + ++ + N AIGLG Sbjct: 417 LGSLN-IAH----TMDSPNFARTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQ 471 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G Sbjct: 472 MNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASG 531 Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + + + E+ ++ +R W +L+ V G+ N N A+ PT + Sbjct: 532 EYFSQYLQGNWQPKTAKVGELFAHSSITLPTREMWAQLRDDVMRYGIYNQNIQAVPPTGS 591 Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + + K +G F+ NE + A+ D Sbjct: 592 ISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------- 637 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 A+EI +I++ + + +DQ SL L+ D + + ++ Sbjct: 638 -----------------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 680 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 681 IYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|330004286|ref|ZP_08304844.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] gi|328536658|gb|EGF62980.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] Length = 775 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 214/802 (26%), Positives = 341/802 (42%), Gaps = 104/802 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++I+ +G+ + + ++ +V A G+ VS+ V ++ DG++ S + ALI Sbjct: 2 IRIIKRNGSAEALSEEKYNRVVMWATDGVDGVSASAVAMGAAASIVDGMTTSQVHDALIK 61 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + PNY++V AR + K+R++ H + + YP+++ ++ Sbjct: 62 AAADLISADSPNYSQVAARLSIFKIRKDA------------HGQYE--YPDFYEHILKNV 107 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318 + E M + ++ L +K ERD F Y L +Y + +NG E PQ Sbjct: 108 TRGVYDSEIMHKYSCEEIDELGAYMKPERDDNFGYAATTQLRGKYLVQHRVNGEIYESPQ 167 Query: 319 AFFMRVAMGLA--LKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 +M V M L + K +E FY++ S+F TP + +G R P Q SS Sbjct: 168 HIYMLVGMCLYQDWNNGDMGKTRLEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFSS 225 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G ++ +R LG+ I GVIPFLK+ Sbjct: 226 CVLIESGDSLKSINATTSAIVEYISQRAGIGVNFGSIRALGSPIRNGEATHTGVIPFLKL 285 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA AY WH++ L L+ N G D R M+ + L Sbjct: 286 FQAAVKSCSQGGVRGGAATAYYPLWHLEANSLLVLKNNRGVDSNRVRHMDYGVELNRLMY 345 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVAL 545 +R+ + TLFSP +V L + + EFE Y YE RK + AV L Sbjct: 346 RRLIEGGAITLFSPHDVPGLLNAFYADQDEFERLYVQYENDPS------IRKESVPAVDL 399 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEE 596 + ++ TG +I D N + V + SNLC EI L + + E Sbjct: 400 FSSLMQERASTGRIYIANIDHMNTHGAFDEAVAPIKQSNLCAEIALPTKPLAFTDDPNGE 459 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 A+C L + NL A + D +++A AV LD ++D + + A+ R++ Sbjct: 460 IALCTLSAFNLGA--LESLADLEEVAF---YAVSALDCLLDYQDYPMFAAETPAKARRSL 514 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G+ F L Y+ + ++ E+ E + F+ + AS LA ++GA F + + Sbjct: 515 GIGVTNFAYWLAKNGAKYSGVDGNKLVHETFEAVQFYLLKASNLLASDKGACEWFGQTKY 574 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 +G+ PID + EL N L WD L+K ++ G+RNS A P T + I Sbjct: 575 AKGLLPIDHYRKQLDA-SELNANHPLLLDWDGLRKDIERYGLRNSTLSAQMPCETSSQIT 633 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ-----RDLWDEAMISDLKYHDGSI 831 + I+P + VKS+ G V +V E + LWD Sbjct: 634 NSTNGIEPPRGPVSVKSSKDG----VVKMVVPEFSRIGDAYEYLWD-------------- 675 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----K 884 I D+ + A QK+IDQ+ S N D SG+ K Sbjct: 676 -----IEDNFGYLTKVAI-------------MQKFIDQSISANTNYDPARFASGRVPMQK 717 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 + A+ MG+KT YY +R Sbjct: 718 MLTDLLDAYRMGVKTLYYHNTR 739 >gi|315605372|ref|ZP_07880415.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 180 str. F0310] gi|315312941|gb|EFU61015.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 180 str. F0310] Length = 718 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 192/660 (29%), Positives = 296/660 (44%), Gaps = 72/660 (10%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y F F +LG Y Y L +G R + F RVAM L L + E A +F Sbjct: 97 YAHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVAMVSLYLARGDIE-LARQFV 153 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + + F +TPT N+G +L SCFL + D++ I + L+K GG+ Sbjct: 154 DEIMTGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GV+P +K+ D+ NQ G R+GA YL H D+ F Sbjct: 214 QLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMAF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + +N LFSP +V ++ + E + Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSPYDVERVYGVPFSEISVT- 332 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y D G I RKI+A ++ + + FE+G+P+I F+D N +P + G + S Sbjct: 333 EKYHEMVDDGRIHK-RKINARRFFQTIAEIQFESGYPYIVFEDTVNAANPIK--GRITMS 389 Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI T N V CNLGS+N+ D + TI TA+R Sbjct: 390 NLCSEILQVSEASTYNDDLSYAHVGKDISCNLGSLNIA-----KTMDSPDFSKTIETAIR 444 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D+ + + + N AIGLG M L H+ Y S EA++ + Sbjct: 445 GLTAVSDLSDIGAVPSIARGNAMSHAIGLGQMNLHGYLAREHVYYGSEEALDFTNIYFMT 504 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE-----VRDELA---MNR 740 + + AI AS +A+ERG + F+ S + G F I E R+ LA ++ Sbjct: 505 VLYEAIKASCTIARERGERFEGFEDSTYASGEFFRKYIDEAWEPTTDKCRELLAASSIHV 564 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 ++ W+ L V GM N N A+ PT +I+ I + SI P + + K G Sbjct: 565 PTQQDWEALAADVARYGMYNQNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRV 624 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 ++ NE +L+Y+ A+EI P +I+ Sbjct: 625 YYPAPYMSNE-------------NLQYYQ------------------DAYEIGPEKIIDI 653 Query: 860 ASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L Y D + + L+ Y AW G+KT YY+R R ++E + ++G Sbjct: 654 YAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYAWRKGIKTLYYMRLRQ-MALEGTEVEG 712 >gi|255327221|ref|ZP_05368296.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia mucilaginosa ATCC 25296] gi|255295839|gb|EET75181.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia mucilaginosa ATCC 25296] Length = 726 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 186/671 (27%), Positives = 302/671 (45%), Gaps = 72/671 (10%) Query: 276 FDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 ++ ++ N K Y F F +LG Y Y L +G R + F RV M L Sbjct: 94 YNFQFIKNLFKRAYAVKFRFPTFLGAFKFYTSYALKTFDGQR--YLERFEDRVCMVALLL 151 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 EK A + + + S F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 152 AEGNEKLAEDIVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIGRSINSA 211 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ T +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 212 LQLSKRGGGVAFALTNLRESGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 271 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP +V + Sbjct: 272 YLHAHHPDIYAFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERI 331 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + + ++ + YE D K KI+A ++ + + FE+G+P++ F+D N Sbjct: 332 YGVPFSDINVSEKYYEMVDDARITK--SKINAREFFQTIAEIQFESGYPYVMFEDTVNRA 389 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFD 617 +P G + SNLC+EI L S T CNLGS+N+ D Sbjct: 390 NPI--AGKIIMSNLCSEI-LQVSEPSTYHADLGYETVGKDISCNLGSLNIAL-----TMD 441 Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D T+ TA+R L +V D + ++ ++ N A+GLG M L H+ Y S Sbjct: 442 GDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGNGMSHAVGLGQMNLHGYLAREHVYYGS 501 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-----GLLA 730 EA++ + +++HAI AS+++A+ERG + F+ S + G F I Sbjct: 502 EEALDFTNMYFYTVAYHAIRASMQIAKERGQRFEGFENSKYASGEFFAKYIEKEWAPQTE 561 Query: 731 EVRDELAMNRT-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ A + +R W +L V GM N N A+ PT +I+ I G + SI P + Sbjct: 562 RTRELFAKHHIPTREEWIQLAADVAQYGMYNQNLQAVPPTGSISYINGSTSSIHPIASKI 621 Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K G ++ NE +L+Y+ S Sbjct: 622 EIRKEGKLGRVYYPAPYMTNE-------------NLEYYQDS------------------ 650 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 651 YEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYIRLRQ 710 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 711 -MALEGTEVEG 720 >gi|87120531|ref|ZP_01076425.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp. MED121] gi|86164174|gb|EAQ65445.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp. MED121] Length = 755 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 214/797 (26%), Positives = 338/797 (42%), Gaps = 101/797 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G S N +++ +V A GL +VS V + ++G+ +D+ LI Sbjct: 4 LTVTKRNGETESINLEKIHKVVTWAAEGLDNVSVSQVELKAQIQFFEGIKTTDIHETLIK 63 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ P H +Q L + RY E Sbjct: 64 SAADLISEDTPDYQYMAARLAIFHLRKKAFGE-FEPPHLLAH--VQNLVEQK--RYDAEI 118 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 + A S +FD L L + RD F Y ++ L +Y + + G E PQ + Sbjct: 119 LSAY----SEAEFD--QLNGFLDHSRDMNFSYAAVKQLEGKYLVQNRVTGDIYESPQFIY 172 Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + + FY+ +S+F TP + +G R P Q SSC L Sbjct: 173 LLVAACLFANYDASVRLDYIRRFYDAVSNFKISLPTPIM--AGIRTPTRQFSSCVLIECG 230 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 231 DSLDSINATSSAIVKYVSQRAGIGINAGAIRALGSAIRGGEAFHTGCIPFYKHFQTAVKS 290 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ Sbjct: 291 CSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLISGG 350 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + +EFE Y YE AD K + I A L+ + Sbjct: 351 NITLFSPSDVPGLYDAFFADQEEFERLYVQYE--ADDSVRK--QTIKASELFTLFASERA 406 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSI 605 TG ++ D CN SP V V SNLC EI L + E A+C L + Sbjct: 407 STGRIYLQNVDHCNTHSPFDPAVAPVKQSNLCLEIALPTKPLQHIYDEKGEIALCTLSAF 466 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + D+L VR LD+++D + + A+ + R +G+G++ + Sbjct: 467 NL-----GSLESLDELEELSDLIVRALDSLLDYQNYPVPAAQSATDLRRTLGVGVINYAY 521 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ A E+ ++ E I ++ + AS L++ERGA +F + + +G+ PIDS Sbjct: 522 YLAKNGVRYSDGSANELTHKTFEAIQYNLLKASNNLSKERGACQAFDETTYAKGILPIDS 581 Query: 726 IGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E+ + L W+ L+K + G+RNS A+ P+ T + I + I+ Sbjct: 582 ------YKKEIDKVCSPELYYDWETLRKDIVEHGLRNSTLTALMPSETSSQIHNATNGIE 635 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK++ G LKQ + ER+ D Sbjct: 636 PPRGFVSVKASKDGI-----------LKQ-----------------VVPEFERLKD---- 663 Query: 844 IHATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ- 891 E + +W I S QK++DQA S N D E S + + + Sbjct: 664 ------EYELLWSIPSNDGYLQLVGIMQKFVDQAISANTNYDPAKFESSKVPMKLLLKDL 717 Query: 892 --AWLMGLKTTYYLRSR 906 A+ +G+KT YY +R Sbjct: 718 LTAYKLGIKTLYYHNTR 734 >gi|157371958|ref|YP_001479947.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia proteamaculans 568] gi|157323722|gb|ABV42819.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia proteamaculans 568] Length = 714 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 191/691 (27%), Positives = 310/691 (44%), Gaps = 84/691 (12%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IE 315 Y E+ V A+ DF + Y + F FE +LG Y Y L +G R +E Sbjct: 71 YYEQSVLAQY------DFAFIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLE 124 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT 374 + VAM LA +T + VE + S F +TPT N G + +L SCFL Sbjct: 125 RYEDRVCMVAMTLAAGDTALAQDLVE---EMISGRFQPATPTFLNCGKQQRGELVSCFLL 181 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I A+ L+K GG+ T +R +GA I +S GVIP +K+ D Sbjct: 182 RIEDNMESIGRAVNSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDA 241 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 242 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAK 301 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N LFSP +V ++ + E ++ E Y D I+ R I+A ++ + + F Sbjct: 302 NNEEMYLFSPYDVEQVYGVPFSEISVS-EKYREMVDDKRIRKSR-INAREFFQVLAEIQF 359 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNL 602 E+G+P++ F+D N +P G ++ SNLC+EI +N +S + CNL Sbjct: 360 ESGYPYMMFEDTVNRENPI--AGRINMSNLCSEILQVNRASTYHDDLSYDQVGKDISCNL 417 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 GS+N+ D + TA+R L V D+ + ++ + N + AIGLG M Sbjct: 418 GSLNIA-----KTMDAPDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRSSHAIGLGQM 472 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 L I Y S E ++ + +++HAI AS +LA ERG A+ F+ S + G Sbjct: 473 NLHGYLARERIFYGSEEGIDFTNIYFYAVAYHAIRASNQLAIERGSAFGGFEDSTYASGE 532 Query: 721 F-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + D + VR A + R W L++ V G+ N N A+ PT +I Sbjct: 533 YFSKYTERDWLPQTERVRTLFADANIAIPGREEWLALRQSVMMHGLYNQNLQAVPPTGSI 592 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I + SI P +V+ ++ R +G IG Sbjct: 593 SYINNSTSSIHP---------------------IVSRIEIR-------------KEGKIG 618 Query: 833 NI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 + + +D + + A++I P +I++ + + +DQ SL L+ D + + ++ Sbjct: 619 RVYYPAPYMTNDNLEYYQDAYDIGPEKIIDTYAAASQHVDQGLSLTLFFRDTATTRDINR 678 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 679 AQIYAWRKGIKTIYYIRLRQ-MALEGTEVQG 708 >gi|295134783|ref|YP_003585459.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia profunda SM-A87] gi|294982798|gb|ADF53263.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia profunda SM-A87] Length = 564 Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 187/642 (29%), Positives = 283/642 (44%), Gaps = 116/642 (18%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +A++ K +R + QIL Y L + E ++ R+A A K K + A Sbjct: 11 IADEPKNKRLWWLNDESQQILNRGYLL-----KGETVKSAIERIANASA-KRLYKPELAE 64 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F ++ S+P N GT SCF VPD++ GI L E M K GG Sbjct: 65 AFIEMIERGWMSLSSPIWANMGTERGLPISCFNVYVPDNIEGITHKLGEVIMQTKIGGGT 124 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +RG G+ + NGKS G F+K+ + ++QGG R+GA AYL+ H D++ Sbjct: 125 SGYFGELRGRGSAVT-DNGKSSGATSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIK 183 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL++ KN G+ ++ +PD +M+ + + D+ +E Sbjct: 184 EFLEI-KNIGNP---IQNLFYGVCVPDYWMQEMIEG---------------DMEKRE--- 221 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577 +W K+L + G P+I FKD N PQ + Sbjct: 222 ------------------------IWAKVLESRQQKGLPYILFKDNINRFKPQVYKDKNR 257 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +HSSNLC+EI L S+ +E+ +C L S+NL +D K ++ A+ LD V+ Sbjct: 258 TIHSSNLCSEIALPSTEDESFICCLSSMNL------ELYDEWKDTEAVKLAIYFLDGVLQ 311 Query: 638 I------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 H + A + HRA+GLG MG+ S L IP+ A + + E IS Sbjct: 312 EFIAKTEGNHYLASANRFAKNHRALGLGAMGWHSYLQKNRIPFEGMRAKGLTHQIFEDIS 371 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A AS ELA G KG Sbjct: 372 AKATKASKELATIYGEPEMLKG-------------------------------------- 393 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G+RN+ MAIAPT + + I G S I+P N Y G+F N +L L Sbjct: 394 ----YGLRNTTLMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLAKGNFMRKNKYLKQLL 449 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +++ L +E + H GS+ ++E + + K I T EI + +I+ AS RQK+IDQA Sbjct: 450 EEKGLDNEDTWRSIMLHHGSVQHLETLTQEEKDIFKTFKEISQLEIIQQASVRQKFIDQA 509 Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 QSLNL + P+G + ++ + +AW +G+KT YY RS+S + Sbjct: 510 QSLNLNI--PAGVPVRDVNQLMIEAWKLGVKTLYYQRSQSVS 549 >gi|238762670|ref|ZP_04623639.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] gi|238698975|gb|EEP91723.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] Length = 693 Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 193/694 (27%), Positives = 314/694 (45%), Gaps = 87/694 (12%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 +EEG + + E DF + Y + F F +LG Y Y L +G R +E Sbjct: 46 VEEGYYEKEVLERY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + + VE + S F +TPT N G + +L SCFL Sbjct: 105 YEDRVCLVALTLAAGNQQVARDLVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ T +R +GA I +S GVIP +K+ D Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 281 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP +V ++ + E ++ E Y D I+ KI A ++ + + FE Sbjct: 282 NEEMYLFSPYDVERVYGVPMSEISVS-EKYREMVDDKRIRK-SKIKAREFFQILAEIQFE 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +NS +E + CNLG Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ D +I TA+R L V D+ N ++ +K N AIGLG M Sbjct: 398 SLNIA-----QTMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L I Y S EA++ + +++HAI AS +LA ERG S FKG +DQ + Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERG--SHFKG--FDQSTYA 508 Query: 723 IDSI----------GLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 A+VR E ++ ++ W L++ V G+ N N A+ PT Sbjct: 509 SGHYFNKYTEQSWQPKTAKVRSLFAEAGISVPNQQDWVALRQSVMAHGIYNQNLQAVPPT 568 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P +V+ ++ R +G Sbjct: 569 GSISYINHSTSSIHP---------------------IVSPIEIRK-------------EG 594 Query: 830 SIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 IG + + +D + + A++I P +I++ + + +DQ SL L+ D + + Sbjct: 595 KIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRD 654 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 ++ AW G+KT YY+R R ++E + ++G Sbjct: 655 INKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687 >gi|331684293|ref|ZP_08384885.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] gi|331077908|gb|EGI49114.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] Length = 714 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + I+A ++++ + FE+G+P+I Sbjct: 311 P---YDIERVYGKPFADVAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|308177565|ref|YP_003916971.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter arilaitensis Re117] gi|307745028|emb|CBT76000.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter arilaitensis Re117] Length = 712 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 190/659 (28%), Positives = 302/659 (45%), Gaps = 72/659 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + + F FE +LG Y Y L +G R +E + VA+ LA + EK A+ Sbjct: 93 FGKKFRFETFLGAFKFYTSYTLKTFDGKRYLERYEDRVCMVALHLARGD---EKLALHLV 149 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT N+G + +L SCFL + D++ I A+ + L+K GG+ Sbjct: 150 DEIIEGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARAVNSSLQLSKRGGGVAL 209 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 210 SLTNLREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIYRF 269 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F EI+ Sbjct: 270 LDTKRENADEKIRIKTLSLGVVIPDVTFELARKNEDMYLFSP---YDVERVYGVPFSEIS 326 Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D IK KISA ++ + + FE+G+P+I F+D N +P G + Sbjct: 327 VTEKYYDMVDDARIKK-TKISAREFFQTLAEIQFESGYPYIMFEDTVNKANPI--AGRIT 383 Query: 581 SSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI SS+ E + CNLGS+N+ D LA+++ A Sbjct: 384 MSNLCSEILQVSSASEFSDDLSYKTVGKDISCNLGSMNIA-----KAMDGKDLATSVDIA 438 Query: 629 VRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D++ ++ N AIGLG M L HI Y S E ++ + Sbjct: 439 IRALSAVSDMSYIASVPSIADGNRKSHAIGLGQMNLHGFLAREHIYYGSEEGIDFTNIYF 498 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNR 740 I FHA++AS ++A ERG + +F+ S + G F + + VR+ M+ Sbjct: 499 YTILFHALTASNKIAMERGETFDNFENSKYASGEFFDKYTDQEWVPATERVRELFDGMHI 558 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 ++ W LK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 559 PTQEDWKTLKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRK------- 611 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 E I + Y+ N E I + A+EI +I++ Sbjct: 612 -----------------EGKIGRV-YYPAPYMNNENI-----DFYEDAYEIGYEKIIDTY 648 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 649 AAATQHVDQGLSLTLFFKDTVTTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEVEG 706 >gi|227888209|ref|ZP_04006014.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|300986154|ref|ZP_07177744.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|301050517|ref|ZP_07197393.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|227834849|gb|EEJ45315.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|300297773|gb|EFJ54158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|300407908|gb|EFJ91446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|307554651|gb|ADN47426.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli ABU 83972] gi|315290986|gb|EFU50351.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 153-1] Length = 701 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 193/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + I+A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIM 354 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 411 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 412 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 468 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 528 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATS 587 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695 >gi|157148213|ref|YP_001455532.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter koseri ATCC BAA-895] gi|157085418|gb|ABV15096.1| hypothetical protein CKO_04024 [Citrobacter koseri ATCC BAA-895] Length = 706 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 191/662 (28%), Positives = 302/662 (45%), Gaps = 84/662 (12%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 F F+ +LG Y Y L +G R + F RV M E A++ + + S Sbjct: 89 FRFQTFLGAWKYYTSYTLKTFDGKR--YLEDFEDRVTMVALTLAQGNEALAMQLTDEILS 146 Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + + Sbjct: 147 GRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 206 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ Sbjct: 207 REAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 266 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENY 525 D++ R ++ IPD+ + +NA LFSP D+ +YGK F +IA E Y Sbjct: 267 ENADEKIRIKTLSLGVVIPDVTFRLAKENAQMALFSP---YDVERIYGKPFGDIAISERY 323 Query: 526 -ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E AD K + I+A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 324 DELLADERVRKQY--INAREFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 379 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+S CNLGS+N +AH D T+ TA+R L Sbjct: 380 CSEILQVNSASTYDENLDYAQTGHDISCNLGSLN-IAH----TMDSPNFGRTVETAIRGL 434 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + ++ Sbjct: 435 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTVT 494 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSI-GLLAEVRDELAM 738 +HA++ S+ +A+ERG ++ FK S + G + D++ L A M Sbjct: 495 WHALNTSMMMARERGKTFAGFKQSRYASGEYFEQYLQGDWQPKTDTVRALFARS----GM 550 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797 R W L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 551 TLPGREMWARLRDEVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTG 610 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F+ NE N++ D A+EI P +I Sbjct: 611 RVYYPAPFMTNE-----------------------NLDMYQD--------AYEIGPEKII 639 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 ++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + + Sbjct: 640 DTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-LALEGTEI 698 Query: 917 KG 918 +G Sbjct: 699 EG 700 >gi|221102509|ref|XP_002163270.1| PREDICTED: similar to RiboNucleotide Reductase family member (rnr-1), partial [Hydra magnipapillata] Length = 428 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 158/455 (34%), Positives = 222/455 (48%), Gaps = 60/455 (13%) Query: 270 HESMMDFDLVYLAN----DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 H+ + DLV + L Y RD G +L DRY L E QA F RVA Sbjct: 11 HQKAAEKDLVLKVDPKQITLDYTRDAYLTEFGKAVLEDRYLLEG-----ETYQAMFARVA 65 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 A + E KR Y+ +S FM STP L N G + SCFL TV D+L GI Sbjct: 66 CAFA-DDLEHAKR---LYDYISKLWFMPSTPILSNGGAKRGLPISCFLNTVTDNLDGIIK 121 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 EN +LA GG+G W VR LG + G G+S G+IPF++V + +A++QG R+ Sbjct: 122 TWNENVLLASNGGGIGTYWGDVRSLGESV-GRAGESSGIIPFIRVMDSQTLAISQGSLRR 180 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 G+ YL+ H ++EEF+D+RK +GD R++ +++ I D FM+ V N + L SP Sbjct: 181 GSAAVYLDIHHPEIEEFVDIRKPSGDFNRKSLNLHHGVNITDKFMQAVKHNKPFELLSPK 240 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 KV + + A L++K+L +TG P++ F D Sbjct: 241 TK---------------------------KVVKTVDARLLFQKILETRMQTGEPYLVFTD 273 Query: 566 PCNIRSP--QQHVGV-VHSSNLCTEITLNSS-----SEETAVCNLGSINLLAHFANNQFD 617 N P Q+ +G+ V SNLC+EI L + +E TAVC L S+NL ++D Sbjct: 274 TVNKSLPKHQRELGLKVKMSNLCSEILLPTGIDHLGNERTAVCCLSSLNL------EKWD 327 Query: 618 -YDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + I +R LDNV ID + +AK S R++GLG+MGF S L +I Sbjct: 328 EWHDHPLMIEDILRFLDNVLQTYIDEAPEGMARAKYSATRERSVGLGVMGFHSFLQAKNI 387 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGA 707 P+ S A I A +ASV LA+E+GA Sbjct: 388 PFESAMAKSWNMRIFRTIRQKADAASVALAEEKGA 422 >gi|329766042|ref|ZP_08257603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137497|gb|EGG41772.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Nitrosoarchaeum limnia SFB1] Length = 882 Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 159/608 (26%), Positives = 289/608 (47%), Gaps = 55/608 (9%) Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 S+ +M +F + + A K + E+++L+++ F+ ++PT+ N+G R QLS+ Sbjct: 222 ASKGQMKVSFKDLLTLIAAKKFDSYADKITEYFDLMTAQDFLPNSPTMMNAGGRLGQLSA 281 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ +PDD+ I + + A++ K GG+G +++ +R G + T+G + G + F+ + Sbjct: 282 CFVLGMPDDMEKIMKSTSDAALIFKSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNI 341 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N V QGGKR+GA +E WH DVE+F+ + G + N + I + F Sbjct: 342 INTVTEVVKQGGKRRGANMGIIEAWHPDVEKFITNKTEPG----VLENFNVSVGIWEDFW 397 Query: 491 KRV--TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + T++ + L SP DR +K +I+A L Sbjct: 398 NALVNTEDGKYMLRSP------------------------RDRKPVK---EINAHQLIDL 430 Query: 549 MLTMLFETGHPWITFKDPCNIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 + +++ P + F D N + + + ++N C E +L CNLGSIN Sbjct: 431 IALSAWKSAEPGLIFFDQINKYNVFAKARQAPLRATNPCGEQSLYPYES----CNLGSIN 486 Query: 607 LLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L+ +FD+ + TIR R LDN+ID+N + +++ ++ R IGLG+M Sbjct: 487 LVNLVKRQADGEYEFDWQRYEETIRKTTRFLDNIIDVNHYPVKEIDIASKDSRRIGLGVM 546 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L+ L IPY S E E+ + E ++++++ SV LA+ RG + + + +G Sbjct: 547 GVADLLYKLKIPYNSKEGYELQSKLSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKI 606 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PI G + ++ WD L +++K G+RN +APT T++ I S Sbjct: 607 PI--AGYYEKPKESHCYE------WDALIEKIKKHGIRNVLTTTVAPTGTLSMIADCSNG 658 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 ++P++ ++ K G F N + LK+ L+ + +++ + + GS+ I IP + Sbjct: 659 MEPAFALVFEKRVTVGRFFYTNKIVEEVLKEHGLYSDELLAKIADNYGSLKGIPEIPQWM 718 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 + ++ TA +I + + Q WI A+++N+ D + + + Y A +GLK Sbjct: 719 QDVYVTAMDIHWADHLMAQGVWQDWIGNAIAKTINMPYD-VTAEDVKSAYLLAHELGLKG 777 Query: 900 TYYLRSRS 907 R S Sbjct: 778 ITVYRDGS 785 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 8/101 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN-K 88 ++ KR+G VT+F+ +KIS AI KA A S++ RV + +L + V +L++ Sbjct: 12 EIRKRSGAVTAFNQNKISNAIFKALAAT-----SKADRV--LADHLANKVVQKLVEQGFT 64 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 ++ +EDIQD VE +L+ SG+ I + Y++YR ER +R Sbjct: 65 NSRAPSVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLR 105 >gi|189485391|ref|YP_001956332.1| cobalamin-dependent ribonucleotide reductase alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287350|dbj|BAG13871.1| cobalamin-dependent ribonucleotide reductase alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 767 Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 180/634 (28%), Positives = 291/634 (45%), Gaps = 82/634 (12%) Query: 284 DLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL------KETEKE 336 +L E E L +L RY +G+ IE P+ F RVA +A ++T+ Sbjct: 8 ELISENKVNLENNALTVLKKRYLKKDKDGNVIESPEDLFYRVAENIAQADKIYDEDTDIT 67 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 EFY +SS F+ ++PTL N+G QLS+CF+ + D + IF L+ A++ K Sbjct: 68 ILIREFYLTMSSCDFLPNSPTLMNAGRHLQQLSACFVLPIDDSMDSIFETLKNTALIHKS 127 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG G ++ +R + T+G S G I F++V N A+ QGG R+GA L H Sbjct: 128 GGGTGFSFSRLRPKKDVVRTTSGISSGPISFMQVFNAATEAIKQGGTRRGANMGMLRIDH 187 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ +F+ + D ++ N + I FM + + + L++P Sbjct: 188 PDILDFIICK----DKDDSLNNFNISVAITKKFMDALEKGEYYNLYNP------------ 231 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 R + + R ++A ++ K++ ++ G P I F D N ++ Sbjct: 232 --------------RNGVIIGR-LNANEVFGKIVDQAWKNGEPGIVFVDRMNHKNTTPSA 276 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 G + S+N C E L CNLGSINL NN +++KL T++TAV LDNVI Sbjct: 277 GSIESTNPCGEQPLLPYES----CNLGSINLGHFVKNNDVNWEKLEKTVKTAVHFLDNVI 332 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D++ + I+K + ++R IGLG+MG+ L L IPY S +++ +A+E M FI + Sbjct: 333 DVSNYPIQKIGEVTRSNRKIGLGIMGWADLLLYLGIPYGSNDSLALAEELMGFIHSKSRK 392 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA +RG++ +FK S++ +G P+ Sbjct: 393 ASEELAFKRGSFPNFKKSIYAKGS-PV--------------------------------- 418 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRD 814 RN+ IAPT TI I S I+P + +Y + + + VN + K+ Sbjct: 419 --RNATTTTIAPTGTIGMIASASSGIEPIFALVYKRMQCLDNEEMYEVNPYFEKLAKENG 476 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + +I + GSI + IP+ +KKI T+ +I P I+ + QK+ D A S Sbjct: 477 FYSPELIDKIS-EKGSIRGFKEIPEKIKKIFVTSHDIAPEEHIKMQAAFQKFTDNAVSKT 535 Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 + + K+ + +Y ++ MG K R S Sbjct: 536 VNFPNSATKEDVKKVYILSYKMGCKGVTVYRDGS 569 >gi|325496275|gb|EGC94134.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ECD227] Length = 714 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 193/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G R +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + I+A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ AVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVEIAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ ++ +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|293415926|ref|ZP_06658566.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|291432115|gb|EFF05097.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] Length = 714 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 190/671 (28%), Positives = 307/671 (45%), Gaps = 74/671 (11%) Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKET 333 D V D + F F+ +LG Y Y L +G R + F RV M L L + Sbjct: 83 DFVITLFDHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQG 140 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAM 392 + E A++ + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 141 D-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQ 199 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 200 LSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYL 259 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ Sbjct: 260 HAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVER 316 Query: 513 LYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 +YGK F ++A + + E + ++A ++++ + FE+G+P+I ++D N + Sbjct: 317 VYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN 376 Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619 P G ++ SNLC+EI +NS+SE CNLGS+N +AH D Sbjct: 377 PI--AGRINMSNLCSEILQVNSASEYDENLDYTCTGHDISCNLGSLN-IAH----TMDSP 429 Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 A T+ TAVR L V D+ + ++ + N AIGLG M L I Y SPE Sbjct: 430 DFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPE 489 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLL 729 A++ + I++HA+ S+ LA+ERG ++ FK S + G + + + Sbjct: 490 ALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKV 549 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 E+ + +R W +L+ V G+ N N A+ PT +I+ I + SI P + Sbjct: 550 GELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKV 609 Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K +G F+ NE + A+ D A Sbjct: 610 EIRKEGKTGRVYYPAPFMTNE-------NLALYQD------------------------A 638 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 639 YEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ 698 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 699 -MALEGTEIEG 708 >gi|218547808|ref|YP_002381599.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ATCC 35469] gi|218355349|emb|CAQ87956.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia fergusonii ATCC 35469] Length = 714 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 194/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + +K A + + + S F +TPT N G R +L SCFL + D++ I Sbjct: 132 MVALTLAQGDK-TLAKQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + I+A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ AVR L V DI + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVEIAVRGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ ++ +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|49473849|ref|YP_031891.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella quintana str. Toulouse] gi|49239352|emb|CAF25685.1| Ribonucleotide reductase alpha-chain [Bartonella quintana str. Toulouse] Length = 716 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 191/676 (28%), Positives = 300/676 (44%), Gaps = 74/676 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + L E + DF + Y F F +LG Y Y L +G R +E Sbjct: 69 IEEGYYEKTLFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + A F + + + F +TPT N+G + +L SCFL Sbjct: 128 YEDRICLVALYLA---QGNKSLAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ D+ Sbjct: 185 IEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELAQN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFSP D+ + GK F +I+ E+Y D +I+ +KI+A ++ + + Sbjct: 305 NEDMYLFSP---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKINARVFFQTLAEIQ 360 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601 FE+G+P+I F+D N +P G + SNLC+EI S + E CN Sbjct: 361 FESGYPYILFEDTANRANPI--AGRISMSNLCSEILQVSEASELETDLTYRTIGSDISCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + F T+ AVR L V D+ N + K N AIGLG Sbjct: 419 LGSMNIAKAMESTNF-----GRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L I Y S EA++ + +++HAI AS +A+ER ++ F+ S + G Sbjct: 474 MNLHGFLAREQIYYGSLEAIDFTNIYFYTVAYHAIRASNLIARERQKVFAGFEKSAYADG 533 Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I V++ A N + W ELKK V G+ N N A+ PT + Sbjct: 534 SFFTKYIEKEWKPQCVLVQELFARNNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLRSR 906 AW G+K+ YY+R R Sbjct: 684 YAWKKGIKSIYYVRLR 699 >gi|26249070|ref|NP_755110.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli CFT073] gi|26109477|gb|AAN81680.1|AE016765_82 Ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli CFT073] Length = 714 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 193/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + I+A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|257069612|ref|YP_003155867.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Brachybacterium faecium DSM 4810] gi|256560430|gb|ACU86277.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Brachybacterium faecium DSM 4810] Length = 710 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 188/677 (27%), Positives = 307/677 (45%), Gaps = 82/677 (12%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + ++ Y + F F +LG Y Y L +G R +E + + VA+GLA Sbjct: 77 DFSFIESLSEQAYAKKFRFPTFLGAFKYYTSYTLKTFDGERYLERFEDRVVMVALGLAQG 136 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 + E+ A + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 137 D---EQLARNLVDEILDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSA 193 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA Sbjct: 194 LQLSKRGGGVALLLSNLREYGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 253 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + QN LFSP D+ Sbjct: 254 YLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKQNEPMYLFSP---YDV 310 Query: 511 HDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 YGK F E Y D I +KI A ++ + + FE+G+P+I F+D N Sbjct: 311 EREYGKPFADVNVSEVYREMVDNPNISK-KKIQARDFFQNLAEIQFESGYPYIMFEDTVN 369 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQF 616 +P G V SNLC+EI S+ V CNLGS+N+ Sbjct: 370 RANPI--AGKVTHSNLCSEILQVSTPSSMNVDLTYDEMGRDISCNLGSLNIA-----KAM 422 Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D A +I TA+R L V D + ++ + N AIGLG M L + Y Sbjct: 423 DSPDFAQSIETAIRGLTAVSDTSDIESVPTIAEGNRKSHAIGLGQMNLHGYLARERVFYG 482 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S E ++ + +++HAI AS+++A+ERG + F+ S + G + I + E + Sbjct: 483 SEEGLDFTNMYFYSVTYHAIKASMKIAKERGEKFYDFENSKYATGEYFDKYIDQVWEPKT 542 Query: 735 E----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 E L + + LP W +L+ V GM N+ A+ PT +I+ I + SI P Sbjct: 543 EKVRGLFADSNAHLPTQEDWKQLRDEVAEHGMYNAYLQAVPPTGSISYINHSTSSIHP-- 600 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842 +V++++ R +G IG + + +D Sbjct: 601 -------------------IVSQIEIR-------------KEGKIGRVYYPAPYMTNDNL 628 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + + A+EI +I++ ++ + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 629 EYYEDAYEIGYEKIIDTYAQATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLY 688 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 689 YIRLRQ-MALEGTEVEG 704 >gi|293412033|ref|ZP_06654756.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|291468804|gb|EFF11295.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] Length = 714 Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|293406172|ref|ZP_06650098.1| ribonucleotide reductase [Escherichia coli FVEC1412] gi|298381909|ref|ZP_06991506.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] gi|291426178|gb|EFE99210.1| ribonucleotide reductase [Escherichia coli FVEC1412] gi|298277049|gb|EFI18565.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] Length = 706 Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 68 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 123 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 124 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 182 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 183 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 242 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 243 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 302 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + ++A ++++ + FE+G+P+I Sbjct: 303 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 359 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 360 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 416 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 417 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 472 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 473 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 532 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 533 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 592 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 593 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 629 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 630 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 681 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 682 TLYYIRLRQ-MALEGTEIEG 700 >gi|300898655|ref|ZP_07116976.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] gi|300357683|gb|EFJ73553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] Length = 701 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 354 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 411 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 412 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 468 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 528 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 587 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695 >gi|194439439|ref|ZP_03071515.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] gi|194421615|gb|EDX37626.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] Length = 714 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 191/680 (28%), Positives = 313/680 (46%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K + +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKESKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|332753392|gb|EGJ83772.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 4343-70] gi|333000677|gb|EGK20254.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-218] Length = 714 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 194/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N SP G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRASPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D + T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSCITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|294155963|ref|YP_003560347.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma crocodyli MP145] gi|291600345|gb|ADE19841.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma crocodyli MP145] Length = 718 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 166/595 (27%), Positives = 275/595 (46%), Gaps = 78/595 (13%) Query: 346 LSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TPT N+G + + SC+L V D++ I + + L+K GG+ Sbjct: 151 IMSGRYQPATPTFLNAGKKQRGEYISCYLLRVEDNMESIARGISTSLQLSKRGGGVALCL 210 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R LGA I ++ G++P +K+ D+ NQ G+R+GA YL H DV FLD Sbjct: 211 TNLRELGAPIKNIQNQATGIVPVMKILEDSFSYANQLGQRQGAGVVYLSAHHPDVMTFLD 270 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521 ++ D++ R ++ +PD+ + N LFSP D+ YGK F I Sbjct: 271 TKRENADEKIRIKSLSLGLVLPDITFELAKNNEDMALFSP---YDVQREYGKAFSDISIT 327 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y ++ K F ISA L++ + + FE+G+P++ F D N RS H G + Sbjct: 328 KEYYNMLNNKNIKKTF--ISARKLFQTIAELHFESGYPYLLFDDTVNDRSA--HPGRIIM 383 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINL--LAHFANNQFDYDKLASTIRT 627 SNLC+EI SS E CNLGS+N+ L N K + +I Sbjct: 384 SNLCSEIAQPSSETTYNPDLSFVKLGEDIACNLGSMNIDKLMQAGN------KFSDSIYR 437 Query: 628 AVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+ L+++ + + + N +RAIGLG M L I Y + EAVE D Sbjct: 438 AIYALNHIATNSDLSAAPSIQNGNKRNRAIGLGAMNLHGFLSTNSIYYNTKEAVEFTDLF 497 Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-------------PIDSIGLLAEV 732 ++H+ AS +LA+E G +++F+ + + G + P I +AE+ Sbjct: 498 FYTFAYHSFKASNKLAKEGFGKFANFENTKFATGEYFDKYTKAKDDEYKPKSQI--VAEL 555 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + ++ ++ W EL K ++ G+ NS+ MAIAPT +I+ + G + S+ P ++ V+ Sbjct: 556 FKKFDVHIPTKQEWKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTPSLQPVVADVEVR 615 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 V ++ ++E ++ K A+E+ Sbjct: 616 KEGKLGRVYVPAYKISE-----------------------------ENKKYYQMGAYEVG 646 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 P+ +I+ + QK IDQA SL L++ D + + L+ Y A+ + YY+R R Sbjct: 647 PLPIIDVVAAAQKHIDQAISLTLFVKDTVTTRDLNKAYIYAFKQKCASIYYVRIR 701 >gi|204929412|ref|ZP_03220486.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321131|gb|EDZ06331.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 714 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 193/659 (29%), Positives = 305/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +RG GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LRGAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LAMEGTEIEG 708 >gi|323495951|ref|ZP_08101017.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326] gi|323318986|gb|EGA71931.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326] Length = 693 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 183/671 (27%), Positives = 306/671 (45%), Gaps = 70/671 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332 D + + L D Y+ F F +LG + Y L + + + F RV M L L Sbjct: 60 DREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGKRYL-ERFEDRVVMTALTLAR 118 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 +K A++ + S F +TPT NSG + +L SCFL + D++ I A+ + Sbjct: 119 GDK-AFALDLMQEIISQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSL 177 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L++ GG+ + +R GA I G +S GV+P +K+ D+ NQ G R+GA Y Sbjct: 178 QLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 237 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ +FLD ++ D++ R ++ IPD+ ++ QN LFSP +V ++ Sbjct: 238 LNAHHPDIMQFLDTKRENADEKIRIKTLSLGIVIPDITLELAKQNKDMYLFSPHDVERVY 297 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E ++ E Y D I+ KISA L++ + + FE+G+P++ F+D N + Sbjct: 298 GVPFSEISVS-EKYHEMVDDPRIRK-SKISARGLFQTLAEIQFESGYPYLMFEDTVNAAN 355 Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619 P + G ++ SNLC+EI +N +S CNLGS+N+ D+ Sbjct: 356 PIK--GRINMSNLCSEILQVNDASHFNDDLSYAHLGRDISCNLGSVNIAKALDGGHLDH- 412 Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 T+ ++R L+ V +++ ++ ++ N AIGLG M L I Y S E Sbjct: 413 ----TVEVSIRALNAVSEMSAIDSVPSIRRGNDESHAIGLGQMNLHGFLAREQIHYDSEE 468 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLL 729 AV+ +H ++AS +LA ER + F+ S + G F + ++ Sbjct: 469 AVDFTRTYFATTLYHCLTASNKLALERKQVFVGFEHSQYATGEFFTKYLQQDYSPRTDIV 528 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 A + + L M S W +L+ +V G+ N N AI PT +I+ I + SI P + Sbjct: 529 AALFERLDMRVPSIDDWQQLQSKVMESGLYNRNLQAIPPTGSISYINDATASIHPVTAKV 588 Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K G +L N+ N++ D A Sbjct: 589 EIRKEGKIGRVYFPAPYLSND-----------------------NLDYFKD--------A 617 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI P +I+ + + +DQ SL L+ DE + + ++ AW +KT YY+R R Sbjct: 618 YEIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRDINKAQIYAWKKKIKTLYYIRMRQ 677 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 678 -KALEGTQVEG 687 >gi|295397109|ref|ZP_06807220.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] gi|294974651|gb|EFG50367.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] Length = 732 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 188/696 (27%), Positives = 306/696 (43%), Gaps = 93/696 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317 YIEEG + F+ + D Y F F+ ++G Y +Y L N ++ Sbjct: 72 YIEEGFLNKY------SFNFIQSLFDHLYSHKFRFKSFMGAYKFYTQYALKTNDNK-RFL 124 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV 376 + + R+A E A +TPT N+G R ++ SCFL V Sbjct: 125 ERYEDRIAFTALYLADGDEDLAWHIAEEHIEHRLQMATPTFLNAGKKRRGEMVSCFLIDV 184 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ I A+ + L+K GG+G + + +R GA I G GV+P +K+ D Sbjct: 185 QDNMESIGRAVNSSLQLSKRGGGVGVNLSNLREAGAAIKGIENAGSGVVPVMKLLEDAFS 244 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 NQ G+R GA YL +H DV EFL +K D++ R ++ +PD + + + N Sbjct: 245 YANQLGQRNGAGVVYLNAFHPDVYEFLSTKKENADEKIRVKTLSLGLVVPDKYYELLKTN 304 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP D+ +YG+ F E+YE EIK + KI+A L +++ + Sbjct: 305 EPMYLFSP---YDVERIYGEPFGYVDITEHYEDMVANKEIKKY-KINARELEQEISRLQQ 360 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNL 602 E+G+P+I D N +P G + SNLC+EI TLN V CNL Sbjct: 361 ESGYPYIMNVDTANKENPIN--GTITMSNLCSEIMQVQKPSTLNEDLTYKEVGLDISCNL 418 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 S N+ N F+ + TAVR L V D+ + + ++ N + +IGLG M Sbjct: 419 ASTNITEMLKTNDFE-----KAVDTAVRALTAVSDMTSIQAVPSVERGNSAYNSIGLGAM 473 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G +AL I Y S EA+E+ D + ++A+ S ++A+ERG ++ F S + G Sbjct: 474 GLHTALATNQIHYGSAEALELTDAYFMALRYYALKTSNQIAKERGESFFEFDQSAYADGS 533 Query: 721 FPIDSIGLLAEVRDELAMNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTA 770 + I + +V + ++L W L + + G+ N+ + +APT Sbjct: 534 Y-IRERYIDNQVPFVFHSEKVAKLFDHIHIPTPDDWAALNQAIMADGLYNAYLLTVAPTG 592 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ I S SI P +V+ ++ R E I + Y Sbjct: 593 SISYINEASSSIHP---------------------IVHLIENR---QETNIGSMFYPAPY 628 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL------------- 877 + N D + + +A+E D +I++ + QK IDQ SL L++ Sbjct: 629 LDN------DTIQYYKSAYETDMRQVIDTYATAQKHIDQGMSLTLFMQSTIPRGLYEWKN 682 Query: 878 ---DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 D+ + + L+ + AW G+K+ YY+R+ + S Sbjct: 683 GNTDKMTTRDLNRLRNYAWAKGIKSIYYVRTYTDDS 718 >gi|157162126|ref|YP_001459444.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli HS] gi|188494464|ref|ZP_03001734.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] gi|253772464|ref|YP_003035295.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037717|ref|ZP_04871775.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 1_1_43] gi|254162612|ref|YP_003045720.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B str. REL606] gi|301026691|ref|ZP_07190102.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|331643363|ref|ZP_08344494.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|157067806|gb|ABV07061.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli HS] gi|188489663|gb|EDU64766.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] gi|226839341|gb|EEH71362.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 1_1_43] gi|242378237|emb|CAQ33012.1| nrdE, subunit of ribonucleoside-diphosphate reductase 2, alpha subunit dimer and ribonucleoside-diphosphate reductase 2 [Escherichia coli BL21(DE3)] gi|253323508|gb|ACT28110.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974513|gb|ACT40184.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli B str. REL606] gi|253978680|gb|ACT44350.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli BL21(DE3)] gi|299879613|gb|EFI87824.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|309703040|emb|CBJ02372.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli ETEC H10407] gi|315615062|gb|EFU95699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 3431] gi|331036834|gb|EGI09058.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|332344557|gb|AEE57891.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli UMNK88] Length = 714 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 191/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|116511804|ref|YP_809020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. cremoris SK11] gi|116107458|gb|ABJ72598.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactococcus lactis subsp. cremoris SK11] Length = 722 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 197/717 (27%), Positives = 321/717 (44%), Gaps = 85/717 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288 +E +T +K+ + +E + EE ++A L + +F + L +L K+E Sbjct: 32 KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 F ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148 Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TPT N+G R + SCFL + DD+ I + L+K GG+G + T + Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524 D++ R ++ +PD F + V + LF P V YGK F +I E Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y++ EI+ I+A L +++ + E+G+P+I D N +P GV+ SNL Sbjct: 325 YDKMVANPEIRK-TPINARELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI LN V CNLGS N+L ++ D+ +++ + VR L Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRAL 437 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 + + N T+ +K N AIGLG MG S L I Y S EAVE ++ Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497 Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL--AMNRTSR 743 ++ + AS +LA E+GA + +F+ S + G + D ++ EL + + Sbjct: 498 YYTLVASNKLAVEKGASFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTI 557 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W EL+ VKT G+ NS MA+AP +I+ I S SI P Sbjct: 558 ADWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP------------------- 598 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +VN +++R E + + Y + E IP + +A++ D +I+ + Sbjct: 599 --IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRSVIDVYAAA 647 Query: 864 QKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ P G + L + A+ G+KT YY+R+ Sbjct: 648 TEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|323188443|gb|EFZ73729.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli RN587/1] Length = 714 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADEHIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|323971480|gb|EGB66715.1| ribonucleotide reductase [Escherichia coli TA007] Length = 701 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 304/657 (46%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K + +G Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKESKTGRVYYP 610 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|300957446|ref|ZP_07169659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] gi|300315802|gb|EFJ65586.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] Length = 701 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 191/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHTSGFCFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 354 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 411 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 412 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 468 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 528 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 587 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695 >gi|16130589|ref|NP_417161.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|89109468|ref|AP_003248.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|170082261|ref|YP_001731581.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|238901819|ref|YP_002927615.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli BW2952] gi|2507305|sp|P39452|RIR3_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha; AltName: Full=R1E protein; AltName: Full=Ribonucleotide reductase 2 gi|1789030|gb|AAC75722.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|85675520|dbj|BAA16539.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|169890096|gb|ACB03803.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|238863479|gb|ACR65477.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli BW2952] gi|315137288|dbj|BAJ44447.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli DH1] Length = 714 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 330 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 331 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 388 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 389 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 443 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 444 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 503 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 504 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 563 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 564 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 623 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 624 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 652 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 653 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|218706175|ref|YP_002413694.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UMN026] gi|218433272|emb|CAR14172.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli UMN026] Length = 714 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|324005771|gb|EGB74990.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 57-2] Length = 701 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|260869354|ref|YP_003235756.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O111:H- str. 11128] gi|257765710|dbj|BAI37205.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O111:H- str. 11128] gi|323180096|gb|EFZ65648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1180] Length = 714 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L+SCFL + D++ I Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELASCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|222102711|ref|YP_002539750.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium vitis S4] gi|221739312|gb|ACM40045.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium vitis S4] Length = 693 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 186/658 (28%), Positives = 300/658 (45%), Gaps = 69/658 (10%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y + F F +LG Y Y L +G R +E + VA+ LA Sbjct: 61 FNFVRDLFDHAYVKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLA--- 117 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S F +TPT N+G + +L SCFL + D++ I + Sbjct: 118 QGNEALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIARGINSAL 177 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA Y Sbjct: 178 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 237 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 238 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVERVY 297 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + + E AD K +KI A ++ + + FE+G+P+I F+D N + Sbjct: 298 GVAFSEISVTEKYREMVADSRIRK--KKIKARDFFQVLAEIQFESGYPYIMFEDTVNRAN 355 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI T N + CNLGS+N+ A ++ F Sbjct: 356 PI--AGRISMSNLCSEILQVSDVSTYNDDLSYKTMGKDISCNLGSLNIAAVMDSSDF--- 410 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 TI TA+R L V D++ ++ +K N AIGLG M L I Y S E Sbjct: 411 --GRTIETAIRALTAVSDMSHISSVPSIEKGNDDSHAIGLGQMNLHGYLARERIFYGSEE 468 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLL 729 ++ + +++HAI AS +A ERG ++ F+ S + G + + + + Sbjct: 469 GIDFTNMYFYTVTYHAIRASNRIAAERGTSFKGFENSKYASGEYFDKYTQTEWLPATRRV 528 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 AE+ + ++ ++ W LK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 529 AELFETAGISIPTQEDWLALKEVVMASGLYNQNLQAVPPTGSISYINHSTSSIHP----- 583 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +V++++ R E I + Y + N D+L + A+ Sbjct: 584 ----------------IVSKIEIRK---EGKIGRVYYPAAFMSN-----DNLD-YYQDAY 618 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 619 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLR 676 >gi|311741197|ref|ZP_07715021.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] gi|311303367|gb|EFQ79446.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] Length = 720 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 182/675 (26%), Positives = 308/675 (45%), Gaps = 77/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DF + Y F F+ +LG Y Y L R + + F RV+M Sbjct: 86 DFSFIKELFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 145 GDAGLAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ +PD+ + +N LFSP D+ Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVER 321 Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YGK F +I+ E+YE + I+ +KI+A ++ + + FE+G+P+I F+D N Sbjct: 322 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 380 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDY 618 +P + ++ SNLC+EI +NS+SE A CNLGS+N+ D Sbjct: 381 NPVK-TSWINMSNLCSEILQVNSASEFNADLTYEELGSDISCNLGSLNIAM-----TMDS 434 Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A+T+ TA+R L V D + ++ ++ N AIGLG M L HI Y S Sbjct: 435 PDFANTVETAIRGLTAVADKTSIDSVPSVRRGNDESHAIGLGQMNLHGYLGREHIEYGSE 494 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PID---SIGL 728 E ++ + + + A+ AS ++A+ERG Y + F S + G F P + Sbjct: 495 EGLDFTNAYFAAVLYAALRASNKIARERGEYFTEFPQSEYASGEFFDRYDPEEFKPKTKK 554 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +++ S W++LK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 555 VQELFDASSIHTPSAQDWEDLKQEVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIASK 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844 + ++ +G IG + + +D + Sbjct: 615 IEIRK----------------------------------EGKIGRVYYPAPHMDNDNLEY 640 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++EI ++++ + K++DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 641 FKDSYEIGYEKIVDTYAVATKYVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYI 700 Query: 904 RSRSATSVEKSTLKG 918 R R ++E + ++G Sbjct: 701 RLRQ-MALEGTEVEG 714 >gi|300941042|ref|ZP_07155561.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] gi|300454206|gb|EFK17699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] Length = 701 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|269794348|ref|YP_003313803.1| ribonucleoside-diphosphate reductase class Ib subunit alpha [Sanguibacter keddieii DSM 10542] gi|269096533|gb|ACZ20969.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Sanguibacter keddieii DSM 10542] Length = 693 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 190/666 (28%), Positives = 302/666 (45%), Gaps = 78/666 (11%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340 DL Y + F FE +LG Y Y L +G R + F RV M L L + + E AV Sbjct: 69 DLAYSKKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLADGD-ETTAV 125 Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I + L+K GG Sbjct: 126 NVVEEIIAGRFQPATPTFLNSGKAQRGEAVSCFLLRIEDNMESIARGINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F Sbjct: 246 MRFLDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSP---YDVERVYGKPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 ++A E Y D G I+ KI A ++ + + FE+G+P++ F+D N +P + G Sbjct: 303 DVAISEKYHEMVDDGRIRK-TKIKAREFFQTLAELQFESGYPYVMFEDTVNAANPIK--G 359 Query: 578 VVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFDYDKLAST 624 + SNLC+EI L S+ T CNLGS+N+ D A T Sbjct: 360 RITHSNLCSEI-LQVSTPSTYNDDLSYEHIGRDISCNLGSMNIA-----KAMDSPDFAKT 413 Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 I TA+R L V D + ++ +++N + AIGLG M L + Y S E ++ Sbjct: 414 IDTAIRALTAVSDQTSIDSVPSIRRANESGHAIGLGQMNLHGYLARERVFYGSEEGIDFT 473 Query: 684 DESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF---PIDSI-----GLLAEVRD 734 + ++FHAI+AS LA ER + F+ S + G + D + + ++ Sbjct: 474 NIYFYTVAFHAIAASNRLAIERKRFFGGFEDSKYATGEYFDKYTDQVWEPATDRVRQIFA 533 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KS 793 + ++ ++ W ELK V G+ N N A+ PT +I+ I + SI P + + K Sbjct: 534 DAGVHIPTQQDWAELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKE 593 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G +L N+ N+E D A+EI Sbjct: 594 GKIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGY 622 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 623 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQ-LALE 681 Query: 913 KSTLKG 918 + ++G Sbjct: 682 GTEVEG 687 >gi|261342123|ref|ZP_05969981.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|288315454|gb|EFC54392.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] Length = 693 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 196/690 (28%), Positives = 319/690 (46%), Gaps = 82/690 (11%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IE 315 Y EE V AR ++++ + + R F F+ +LG Y Y L +G R +E Sbjct: 50 YYEERVLARYGRDAIVKL------FEHAHARGFRFQTFLGAWKYYTSYTLKTFDGKRYLE 103 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLT 374 + + VA+ LA + E AV+ + + S F +TPT N+G + +L SCFL Sbjct: 104 TFEDRVVMVALTLAQGD---EALAVQLTDEILSGRFQPATPTFLNAGKAQRGELVSCFLL 160 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 161 RIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDA 220 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R ++ I D+ + Sbjct: 221 FSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVITDITFQLAK 280 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTM 552 +NA LFSP D+ LYGK F ++A E Y+ I+ + I+A ++ + + Sbjct: 281 ENADMALFSP---YDIERLYGKAFGDVAISERYDELVADDRIRK-KYINARDFFQTLAEI 336 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVC 600 FE+G+P+I ++D N +P G ++ SNLC+EI +N++S + C Sbjct: 337 QFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNAASTYDENLDYADVGKDISC 394 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659 NLGS+N+ AH D T+ TAVR L V D+ + ++ + N AIGLG Sbjct: 395 NLGSLNI-AH----TMDSPDFGRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLG 449 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718 M L I Y SPE ++ + I++HA+ S+ LA+ERG ++ F+ S + Sbjct: 450 QMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALHTSMMLARERGQRFAGFEQSRYAS 509 Query: 719 GVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 G + D +VR A + +R W +L+ V G+ N N A+ P+ Sbjct: 510 GEYFNQYLENDWQPKTEKVRQLFARAGVTLPTRAMWQQLRDEVMQHGIYNQNLQAVPPSG 569 Query: 771 TIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + + K +G F+ NE + A+ D Sbjct: 570 SISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------ 616 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 A+EI P +I++ + K +DQ SL L+ D + + ++ Sbjct: 617 ------------------AYEIGPEKIIDTYAEATKHVDQGLSLTLFFPDTATTRDINRA 658 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 659 QIYAWKKGIKTLYYIRLRQ-LALEGTEIEG 687 >gi|332999412|gb|EGK18997.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri VA-6] Length = 714 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D + T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|91212036|ref|YP_542022.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UTI89] gi|215487996|ref|YP_002330427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|218559667|ref|YP_002392580.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli S88] gi|237706703|ref|ZP_04537184.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|312965590|ref|ZP_07779820.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|91073610|gb|ABE08491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli UTI89] gi|215266068|emb|CAS10488.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O127:H6 str. E2348/69] gi|218366436|emb|CAR04188.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli S88] gi|226899743|gb|EEH86002.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|294491935|gb|ADE90691.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli IHE3034] gi|307625753|gb|ADN70057.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UM146] gi|312289739|gb|EFR17629.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|323951103|gb|EGB46979.1| ribonucleotide reductase [Escherichia coli H252] gi|323957112|gb|EGB52837.1| ribonucleotide reductase [Escherichia coli H263] Length = 714 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|124485031|ref|YP_001029647.1| hypothetical protein Mlab_0204 [Methanocorpusculum labreanum Z] gi|124362572|gb|ABN06380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanocorpusculum labreanum Z] Length = 736 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 165/612 (26%), Positives = 282/612 (46%), Gaps = 98/612 (16%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL ET +E + E+++ + S F+ ++PTL N+GT QLS+CF V D L IF A++ Sbjct: 32 ALGETPEETK--EYFDAMMSLSFLPNSPTLMNAGTPLGQLSACFTLPVNDSLPEIFDAIR 89 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 A++ + GG G +++ +R G+ + T+G + G + F++V N + QGG+R+GA Sbjct: 90 WGAIIHQSGGGTGYNFSHLRPEGSPVRSTDGVASGPVSFMRVFNAATDVIKQGGRRRGAN 149 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 L WH D+ +F+ + GD + N + + D FM V + Sbjct: 150 MGILNVWHPDIMKFIKSKAKEGD----FSNFNISVMVSDAFMDLVAK------------- 192 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 G++ ++ N + I+ +W ++ +++ G P I F D N Sbjct: 193 ------GEKDKVWVTNTDGVG----------ITVGEIWEGIIEGVWKNGEPGILFYDTIN 236 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 ++P ++G + ++N C E L C LGSINL + +Y+ L R Sbjct: 237 RKNPTPNLGEIDTTNPCGEQPLLPFES----CVLGSINLAKFIRADGLNYEALDKMTRMG 292 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R LD VI N I + + + + R +GLGLMG A+ +L IPY S E ME Sbjct: 293 IRFLDAVITKNVFPIPEIRDATNRTRKVGLGLMGVHDAMLMLRIPYDSEAGRNFCIEVME 352 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 I+ A+ SV L +E+G + +++GS+WD QG+ Sbjct: 353 RINNVAVEESVILGKEKGTFPAYEGSVWDKQGII-------------------------- 386 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFL 806 MRN+ IAPT TI+ + G S I+P + Y + N G F +V+ + Sbjct: 387 ----------MRNAALTTIAPTGTISLLAGCSSGIEPVFSFAYTRRNTVGKTFVMVHPYF 436 Query: 807 VNELKQ-------RDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFEIDPMW- 855 +EL++ EA ++ H GS+ +I +PD K + TA +I W Sbjct: 437 ESELRRVITAMGLTGAEAEAKRDEVINHVHETGSVQDIAWLPDTFKAVFKTALDIG--WK 494 Query: 856 ---LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRS--A 908 L+++A ++ ++++N+ + + + ++ AW G+K T Y SR Sbjct: 495 DHVLMQAAFQKHVHASISKTINMPVTA-TKEDVEKAVILAWREGIKGMTLYRTGSREDVV 553 Query: 909 TSVEKSTLKGVD 920 ++EK +K V+ Sbjct: 554 LALEKQEIKPVE 565 >gi|331658786|ref|ZP_08359728.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] gi|331053368|gb|EGI25397.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] Length = 714 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|331669413|ref|ZP_08370259.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA271] gi|332280667|ref|ZP_08393080.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] gi|331063081|gb|EGI34994.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA271] gi|332103019|gb|EGJ06365.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] Length = 714 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 330 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 331 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 388 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 389 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGLT 443 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 444 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITW 503 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 504 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 563 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 564 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 623 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 624 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 652 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 653 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|218701170|ref|YP_002408799.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI39] gi|218371156|emb|CAR18987.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli IAI39] Length = 714 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A E+ Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISEH 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 562 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFHDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|117624911|ref|YP_853851.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli APEC O1] gi|115514035|gb|ABJ02110.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli APEC O1] gi|315284935|gb|EFU44380.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 110-3] Length = 701 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|314121809|ref|YP_004063928.1| NrdA ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage vB_EcoM-VR7] gi|313151566|gb|ADR32622.1| NrdA ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage vB_EcoM-VR7] Length = 751 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 207/792 (26%), Positives = 337/792 (42%), Gaps = 82/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK-NMYDGLSESDLETALI 203 +++ G F+ +++ ++ +C G L ET K ++ DG++ D++T +I Sbjct: 1 MQVQKSSGVSQDFDGQKIIKVLSWSCEGTN--IDPYELYETIKPHLRDGMTTRDIQTVII 58 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S LI +EP+Y V A+ + LR++V +P+ C + E Sbjct: 59 KVSAGLISVEEPDYQYVAAKATMFALRKDVYGQF--EPRSFIDQISYC---------VNE 107 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L S ++ YL + +K+ERDF Y G L ++Y + G E PQ Sbjct: 108 GKYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFA 167 Query: 321 FMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M + M L E T++ K FY+ +S+ TP + + T Q SSC + D Sbjct: 168 IMAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADS 227 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R G+ I K GVIPF K + + Sbjct: 228 LKSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCS 287 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA AY WH++VE L L+ N G + R M+ + +L M+R+ +N Sbjct: 288 QGGIRGGAATAYYPLWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYI 347 Query: 500 TLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 TLFSP E +L+ Y + E YE ++ ++I A L+ +T T Sbjct: 348 TLFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK-KRIKAKDLFELFMTERSGTAR 406 Query: 559 PWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFA 612 + F D N +P + + SNLC EI + NS E +C L + F Sbjct: 407 VYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSA------FV 460 Query: 613 NNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + FD+ DK+ VR LDN++D + +++A K+ R +G+G+ + + L Sbjct: 461 LDSFDWQDQDKINELAEVQVRALDNLLDYQGYPVKEALKAKK-RRNLGVGVTNYAAWLAS 519 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 YA +A ++ E E + + I AS++LA+E+G + + W +G PID Sbjct: 520 NFASYA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPID---WY 574 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + D++A W +L++ + G+RNS A+ P + + + + I+P + Sbjct: 575 NKKIDQIAAPNYV-CDWAQLREDLVAYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 633 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K + G F N + N + L+D A + K GN K + T Sbjct: 634 SIKESKEGSF---NQVVPNIEHNKGLYDYAWVLAKK------GN---------KPYLTMV 675 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTT 900 I KW+ Q+ S N Y D P GK D +Y W G K Sbjct: 676 AI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLMY--FWYFGGKNL 722 Query: 901 YYLRSRSATSVE 912 YY +R + + Sbjct: 723 YYHNTRDGSGTD 734 >gi|170019073|ref|YP_001724027.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ATCC 8739] gi|256024813|ref|ZP_05438678.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 4_1_40B] gi|300949071|ref|ZP_07163118.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|301645346|ref|ZP_07245293.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|307139367|ref|ZP_07498723.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli H736] gi|169754001|gb|ACA76700.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli ATCC 8739] gi|300451457|gb|EFK15077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|301076380|gb|EFK91186.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|323935631|gb|EGB31948.1| ribonucleotide reductase [Escherichia coli E1520] gi|323941489|gb|EGB37672.1| ribonucleotide reductase [Escherichia coli E482] gi|323960579|gb|EGB56206.1| ribonucleotide reductase [Escherichia coli H489] Length = 701 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|229818598|ref|YP_002880124.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia cavernae DSM 12333] gi|229564511|gb|ACQ78362.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia cavernae DSM 12333] Length = 701 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 191/656 (29%), Positives = 305/656 (46%), Gaps = 81/656 (12%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D+ Y + F F +LG Y Y L +G R +E + + VA+ LA + E+ A+ Sbjct: 77 DVAYAKKFRFTTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLADGD---EQLAL 133 Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E + + S F +TPT N+G + +L SCFL + D++ I + L+K GG Sbjct: 134 ELVDEVISGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARGINSALQLSKRGGG 193 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 194 VALLLSNIREYGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 254 LRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFS 310 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 EI+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P + G Sbjct: 311 EISVTEKYYEMLDDARIRK-TKIKAREFFQLLAEIQFESGYPYIVFEDTVNRANPIK--G 367 Query: 578 VVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI T +S +++ + CNLGS+N+ AH D L T+ Sbjct: 368 RITMSNLCSEILQVSTASSFNDDLSYADTGKDISCNLGSLNI-AH----AMDSPDLGKTV 422 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ +K N+ AIGLG M L I Y S E V+ + Sbjct: 423 GVAIRSLTAVSDQTHIWSVPSVEKGNNDSHAIGLGQMNLHGYLARERIHYGSAEGVDFTN 482 Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA----- 737 + +HAI+AS ++A ERG A++ F S + G F + G+ D +A Sbjct: 483 IYFYTVLYHAIAASNQIAIERGSAFAGFSESQYASGEFFDKYTDGVWEPATDRVAQLFAD 542 Query: 738 --MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 ++ ++ W LK V G+ N N A+ PT +I+ I + SI P Sbjct: 543 AEVHIPTQSDWQALKASVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 591 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V ++ R +G IG + + DD + +A A+EI Sbjct: 592 ----------IVAPIEIRK-------------EGKIGRVYYPAPYLSDDNLEYYADAYEI 628 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 629 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLR 684 >gi|307314436|ref|ZP_07594041.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|306906004|gb|EFN36525.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|323377463|gb|ADX49731.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli KO11] Length = 714 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 191/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPV--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPNFARTVETAVRGLTTVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|333001012|gb|EGK20582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-272] gi|333015484|gb|EGK34823.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-227] Length = 714 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D + T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|260448267|gb|ACX38689.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli DH1] Length = 701 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|256019543|ref|ZP_05433408.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] Length = 701 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 376 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGLT 430 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITW 490 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 550 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|227504015|ref|ZP_03934064.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199409|gb|EEI79457.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 720 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 189/671 (28%), Positives = 305/671 (45%), Gaps = 69/671 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DFD + Y F F+ +LG Y Y L R + + F RV+M Sbjct: 86 DFDFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 145 GDTTVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP---YDVER 321 Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YGK F +I+ E+YE + I+ +KI+A ++ + + FE+G+P+I F+D N Sbjct: 322 VYGKAFADISITEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNKA 380 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSS-------EETA----VCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS S ET CNLGS+N+ D Sbjct: 381 NPVK-TGWINMSNLCSEILQVNSPSVFADDLSYETMGSDISCNLGSLNIAM-----TMDS 434 Query: 619 DKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 T+ TA+R L V D +++ +K N AIGLG M L HI Y S Sbjct: 435 PDFGLTVETAIRGLTAVADKTAINSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGSE 494 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PID---SIGL 728 E ++ + I + A+ AS ++A+ERG Y S F S + G F P + Sbjct: 495 EGLDFTNAYFAAIMYAALRASNKIARERGEYFSEFPQSEYASGEFFDRYDPEEFKPRTAR 554 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +++ + W LK V G+ N N A+ PT +I+ I + SI P Sbjct: 555 VQELFDASSIHTPTAEDWAALKADVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIASK 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + ++ E I + Y + N D+L+ + Sbjct: 615 IEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFK-DS 644 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 645 YEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ 704 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 705 -MALEGTEIEG 714 >gi|9629309|ref|NP_044509.1| ribonucleotide reductase subunit 1 [Human herpesvirus 2] gi|82013519|sp|P89462|RIR1_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=ICP10; AltName: Full=Ribonucleotide reductase 136 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|1869862|emb|CAB06725.1| ribonucleotide reductase large subunit [Human herpesvirus 2] Length = 1142 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 189/663 (28%), Positives = 301/663 (45%), Gaps = 84/663 (12%) Query: 297 GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341 GLQ + Y+ ++L G +E + R+A LA + T + Sbjct: 498 GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 557 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396 F++ L + STP + N GTR+ SSC+L TT L I G + +A+LA+ Sbjct: 558 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNV--SAILAR- 614 Query: 397 SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 +GG+G ND +P + ++P LKV + A N+ R C Sbjct: 615 NGGIGLCMQAFNDASP-------------GTASIMPALKVLDSLVAAHNKQSTRPTGACV 661 Query: 451 YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503 YLE WH DV L ++ G++ +R ++ +A W+PDLF KR+ +N W+LF Sbjct: 662 YLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFD 721 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D L D +G+EFE YE+ E GE + + A A+ R T TG P+I F Sbjct: 722 RDTSMSLADFHGEEFEKLYEHLEAMG-FGETIPIQDL-AYAIVRSAAT----TGSPFIMF 775 Query: 564 KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 KD N G + SNLCTEI +S + VCNLGS+NL + FD+ +L Sbjct: 776 KDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLR 835 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++ V +++ +ID + + N R++G+G+ G +A + + S E ++ Sbjct: 836 DAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLESAEFRDL 895 Query: 683 ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E + A+ S L RGA +S FK S++ G F + N Sbjct: 896 NTHIAEVMLLAAMKTSNALCV-RGARPFSHFKRSMYRAGRFHWERFS-----------NA 943 Query: 741 TSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + R W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K G+ Sbjct: 944 SPRYEGEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGE 1003 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853 N+ L+ EL +R + ++ + + ++ + L H TAF+ D Sbjct: 1004 TLRPNTLLLKEL-ERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQ 1062 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907 LI+ + R ++D +QS+ LY+ E + L + A+ GLKT YY + R Sbjct: 1063 ELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRK 1122 Query: 908 ATS 910 AT+ Sbjct: 1123 ATN 1125 >gi|320640664|gb|EFX10200.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. G5101] Length = 714 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 191/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPV--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TA R L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAGRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 G + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTGKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|323173042|gb|EFZ58673.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli LT-68] Length = 714 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 191/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|331654158|ref|ZP_08355158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] gi|331047540|gb|EGI19617.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] Length = 714 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 302/657 (45%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 330 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 331 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNLC 388 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 389 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 443 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 444 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 503 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 504 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 563 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 564 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 623 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 624 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 652 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 653 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|308273142|emb|CBX29745.1| hypothetical protein N47_F14400 [uncultured Desulfobacterium sp.] Length = 734 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 181/621 (29%), Positives = 288/621 (46%), Gaps = 79/621 (12%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350 L +L RY G IE P+ F+RVA +A ++ + EK +F LL++ Sbjct: 18 LIVLEKRYLKKDKEGKAIETPEDMFLRVAKHIASADSLFAGPFDIEKTEKKFLKLLTNLW 77 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G R QL++CF+ + D + IF L+ AM+ K GG G ++ +R Sbjct: 78 FLPNSPTLMNAGRRLGQLAACFVLPLEDSMDSIFETLKHTAMIHKSGGGTGFSFSRIRPE 137 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + T G S G I F+ V + V QGG R+GA L H D+E F++L+ +TG Sbjct: 138 KDIVLSTAGVSSGPISFMTVFDVATETVKQGGTRRGANMGILRVDHPDIESFIELKNDTG 197 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + ++ N + + D FM ++ + D+ S+ +DL E Sbjct: 198 ----KLNNFNISVALTDSFMDALSNES-------DKDSE-YDLINPRTE----------- 234 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 ++ R++SA ++ ++ + G P I F D N +P +G + ++N C E L Sbjct: 235 ----QITRRVSARKIFDAIVHSAWLNGEPGIIFIDRINRDNPVPELGNIEATNPCGEQPL 290 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 C LGSINL A + +Y +L TI +V LDNV++IN + + + +K + Sbjct: 291 LPYES----CTLGSINLSAMVSGKAVNYKRLKKTIHDSVHFLDNVVEINKYPLARIEKMS 346 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R IGLG+MGF L L I Y S EAV A++ M FIS + AS LA++RG ++ Sbjct: 347 KGTRKIGLGVMGFADMLIKLGISYDSEEAVTQAEKIMSFISEESKIASAALAKKRGNFAF 406 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 +KGS++D P MRN+ IAPT Sbjct: 407 YKGSIYDSPDTPY----------------------------------MRNATTTTIAPTG 432 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 TI+ I G S I+P + + + + G + +N + K + + ++ ++ + Sbjct: 433 TISIIAGTSSGIEPIFGIVQTRRVLDGKTLSDINPLFIGIAKSEGFYSKNLLDEIT-NGT 491 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-- 887 SI I+ IPD +K + TA +I P I + Q++ D A S + P + D Sbjct: 492 SIQQIDAIPDQIKDLFKTAHDILPEQHINIQAAFQRFTDNAVSKTVNFG-PDALRSDIAK 550 Query: 888 IYRQAWLMGLK--TTYYLRSR 906 +Y A G K T Y SR Sbjct: 551 VYMLAHTKGCKGVTIYRYGSR 571 >gi|315061956|gb|ADT76283.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli W] Length = 701 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 302/657 (45%), Gaps = 74/657 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNLC 375 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 376 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGLT 430 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 431 TVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITW 490 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 550 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 F+ NE + A+ D A+EI +I++ + Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|165976418|ref|YP_001652011.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876519|gb|ABY69567.1| ribonucleoside-diphosphate reductase, alpha chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 756 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ +I Sbjct: 5 LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ + P TH + +Y Sbjct: 65 AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 KA L + ++ L + L + RD F Y ++ L +Y + + G E Q + Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + K R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPII--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+ D + ++FE Y YE+ + R + AV L+ ++ Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL N +++ LA + VR LD ++D + ++ AK + R++G+G++ Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578 Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDS + EL T L W+ L+ +K G+RNS ++ P+ T + I + Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + +K++ G VV + + LWD I D+ + +G + Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891 QK+IDQA S N D + K+L Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720 Query: 892 AWLMGLKTTYYLRSR 906 A+ GLKT YY +R Sbjct: 721 AYKYGLKTLYYQNTR 735 >gi|32453720|ref|NP_861929.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage RB69] gi|32350539|gb|AAP76138.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage RB69] Length = 751 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 204/804 (25%), Positives = 346/804 (43%), Gaps = 96/804 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI- 203 +++ G +F+++++ ++ C G Q + + E ++ DG+S D++ I Sbjct: 1 MQVTKSSGVSQNFDAQKIIQVLTWQCEGTQ-IDPYELYEEIKTHLVDGMSTKDIQKICIK 59 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258 ++ ++ +EP+Y V A+ L+ LR++V +P H C+ PE R Sbjct: 60 VAANSISVEEPDYQYVAAKGLMFALRKDVYGQF--EPPAFIDHISYCVNEGKYDPELLSR 117 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 Y E +++YL + +K+ERDF Y G L ++Y + G E Sbjct: 118 YSAE--------------EIIYLDSRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYET 163 Query: 317 PQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 PQ M + M L ET ++ K + FY+ +S+ TP + + T Q SSC + Sbjct: 164 PQFAIMAIGMALHQDETHDRLKHIIRFYDAVSTHQVSLPTPIMAGARTPTRQFSSCVVIE 223 Query: 376 VPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 D L I + +A + +Y G+G + +R G+ I + GVIPF K Sbjct: 224 AGDSLKSIN---KTSASIIEYISKRAGIGINVGMLRAEGSKIGMGEVRHTGVIPFWKHFQ 280 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + +QGG R GA AY WH++VE L L+ N G D R M+ I DL M+R Sbjct: 281 TAVKSCSQGGIRGGAATAYYPMWHLEVENLLVLKNNKGVDENRIRHMDYGIQINDLMMER 340 Query: 493 VTQNAGWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 + +N TLFSP E+S +L+ + ++ + E YE+ I+ ++I A+ L+ +T Sbjct: 341 LGKNDYITLFSPHEMSGELYYSFFEDQDKFRELYEKAEKDPTIRK-KRIKALELFELFMT 399 Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSI 605 T + F D N +P + + SNLC EI + N E +C L + Sbjct: 400 ERSGTARIYPQFVDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNGPDAEIGLCTLSA- 458 Query: 606 NLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 F ++FD+ DK+ VR LDN++D + + +A K+ R +G+G+ Sbjct: 459 -----FVLDKFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAK-KRRNLGVGVTN 512 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + + L Y +A + E E + + I AS++LA+E+G + + W +G P Sbjct: 513 YAAWLASNFASYE--DANYLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTKWSRGELP 570 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID + D++A W + K G+RNS A+ P + + + + I Sbjct: 571 ID---WYNKKIDQIAAPNYV-CDWKNFELNSKEHGIRNSTLSALMPCESSSQVSNSTNGI 626 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + +K + G+F V + N L+D A ++ Sbjct: 627 EPPRGPVSIKESKEGNFRQV---VPNIEHNMSLYDYAW---------------KLAKKGN 668 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL---------DFIYRQAW 893 K + T I KW+ Q+ S N Y D +K D +Y W Sbjct: 669 KPYLTQVAI-----------MLKWVCQSASANTYYDPAVFEKGKVPMSVMLDDLLY--FW 715 Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917 G K YY +R + + L+ Sbjct: 716 YFGGKNLYYHNTRDGSGTDDYELE 739 >gi|283457962|ref|YP_003362568.1| ribonucleotide reductase subunit alpha [Rothia mucilaginosa DY-18] gi|283133983|dbj|BAI64748.1| ribonucleotide reductase, alpha subunit [Rothia mucilaginosa DY-18] Length = 726 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 185/671 (27%), Positives = 302/671 (45%), Gaps = 72/671 (10%) Query: 276 FDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 ++ ++ N K Y F F +LG Y Y L +G R + F RV M L Sbjct: 94 YNFQFIKNLFKRAYAVKFRFPTFLGAFKFYTSYALKTFDGQR--YLERFEDRVCMVALLL 151 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 EK A + + + S F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 152 AEGNEKLAEDIVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIGRSINSA 211 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ T +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 212 LQLSKRGGGVAFALTNLRESGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 271 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP +V + Sbjct: 272 YLHAHHPDIYAFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERI 331 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + + ++ + YE D K KI+A ++ + + FE+G+P++ F+D N Sbjct: 332 YGVPFSDINVSEKYYEMVDDARITK--SKINAREFFQTIAEIQFESGYPYVMFEDTVNRA 389 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFD 617 +P G V SNLC+EI L S T CNLGS+N+ D Sbjct: 390 NPI--AGKVIMSNLCSEI-LQVSEPSTYHADLGYETVGKDISCNLGSLNIAL-----TMD 441 Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D T+ TA+R L +V D + ++ ++ N+ A+GLG M L H+ Y S Sbjct: 442 GDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGNNMSHAVGLGQMNLHGYLAREHVYYGS 501 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-----GLLA 730 EA++ + +++HAI S+++A+ERG + F+ S + G F I Sbjct: 502 EEALDFTNMYFYTVAYHAIRTSMQIAKERGQRFEGFENSKYASGEFFAKYIEKEWAPQTE 561 Query: 731 EVRDELAMNRT-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ A + +R W +L V GM N N A+ PT +I+ I G + SI P + Sbjct: 562 RTRELFAKHHIPTREEWIQLAADVAQYGMYNQNLQAVPPTGSISYINGSTSSIHPIAAKI 621 Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K G ++ N+ +L+Y+ S Sbjct: 622 EIRKEGKLGRVYYPAPYMTND-------------NLEYYQDS------------------ 650 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 651 YEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYIRLRQ 710 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 711 -MALEGTEVEG 720 >gi|281179682|dbj|BAI56012.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia coli SE15] Length = 714 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|161622627|ref|YP_001595353.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage JS98] gi|160331905|gb|AAU29205.2| NrdA aerobic NDP reductase large subunit [Enterobacteria phage JS98] Length = 751 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 204/794 (25%), Positives = 340/794 (42%), Gaps = 86/794 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G F+++++ ++ C G Q + + E ++ DG++ D++ + Sbjct: 1 MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKTHLRDGMTTKDIQNLTVK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258 + LI +EP+Y V A+ L+ LR+EV +P+ H C+ PE R Sbjct: 60 VAANLISVEEPDYQYVAAKQLMFALRKEVYGQF--EPRSFIDHISYCVNEGKYDPELLSR 117 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 Y E ++ +L + +K+ERDF Y G L ++Y + G E Sbjct: 118 YSAE--------------EITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYET 163 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ F + +G+AL + E R + FY+ +S+ TP + + T Q SSC + Sbjct: 164 PQ--FAIMCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVV 221 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R G+ I K GVIPF K Sbjct: 222 IEAGDSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQT 281 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA AY WH++VE L L+ N G D R M+ + DL M+R Sbjct: 282 AVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERF 341 Query: 494 TQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +N TLFSP E+ +L+ Y ++ E E YE I+ ++I A L+ +T Sbjct: 342 GKNDYITLFSPHEMGGELYYSYFEDQERFRELYEAAEKDSSIRK-KRIKARDLFELFMTE 400 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSIN 606 T + F D N +P + + SNLC EI + NS E +C L + Sbjct: 401 RSGTARIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSA-- 458 Query: 607 LLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 F + FD+ DK+ VR LDN++D + + +A K+ R +G+G+ + Sbjct: 459 ----FVLDNFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAKK-RRNLGVGVTNY 513 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + L Y +A ++ E E + + I AS++LA+E+G + + W +G PI Sbjct: 514 AAWLASNFASYE--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPI 571 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + D++A W L++ + G+RNS A+ P + + + + I+ Sbjct: 572 D---WYNKKIDQIAAPNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIE 627 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K + G+F V + N + L+D A + GN K Sbjct: 628 PPRGPVSIKESKEGNFRQV---VPNVEHNQGLYDYA------WSLAKKGN---------K 669 Query: 844 IHATAFEIDPMWLIESASRR-----QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 + T I W+ +SAS Q + +++ LD D +Y W G K Sbjct: 670 PYLTQVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLD-------DLLY--FWYFGGK 720 Query: 899 TTYYLRSRSATSVE 912 YY +R + + Sbjct: 721 NLYYHNTRDGSGTD 734 >gi|303253583|ref|ZP_07339721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247986|ref|ZP_07530016.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647503|gb|EFL77721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855501|gb|EFM87674.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 756 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ +I Sbjct: 5 LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ + P TH + +Y Sbjct: 65 AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 KA L + ++ L + L + RD F Y ++ L +Y + + G E Q + Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAIKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + K R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+ D + ++FE Y YE+ + R + AV L+ ++ Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL N +++ LA + VR LD ++D + ++ AK + R++G+G++ Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFNETSYAQGIL 578 Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDS + EL T L W+ L+ +K G+RNS ++ P+ T + I + Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWESLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + +K++ G VV + + LWD I D+ + +G + Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891 QK+IDQA S N D + K+L Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720 Query: 892 AWLMGLKTTYYLRSR 906 A+ GLKT YY +R Sbjct: 721 AYKYGLKTLYYQNTR 735 >gi|315298702|gb|EFU57956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 16-3] Length = 701 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDKKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|157159104|ref|YP_001463985.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli E24377A] gi|157081134|gb|ABV20842.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E24377A] Length = 714 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 189/680 (27%), Positives = 310/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N+ Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTDHDISCNLGSLNIA-- 423 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N D A T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 424 ---NTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|125624346|ref|YP_001032829.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. cremoris MG1363] gi|124493154|emb|CAL98118.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071130|gb|ADJ60530.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. cremoris NZ9000] Length = 722 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 200/720 (27%), Positives = 321/720 (44%), Gaps = 91/720 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288 +E +T +K+ + +E + EE ++A L + +F + L +L K+E Sbjct: 32 KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 F ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148 Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TPT N+G R + SCFL + DD+ I + L+K GG+G + T + Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524 D++ R ++ +PD F + V + LF P V YGK F +I E Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y++ EI+ I+A L +++ + E+G+P+I D N +P GV+ SNL Sbjct: 325 YDKMVANPEIRK-TPINARELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI LN V CNLGS N+L ++ D+ +++ + VR L Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRAL 437 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 + + N T+ +K N AIGLG MG S L I Y S EAVE ++ Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497 Query: 692 FHAISASVELAQERGAYSSFK---------GSLWDQGVFPIDSIGLLAEVRDEL--AMNR 740 ++ + AS +LA E+G SSFK GS +D+ D ++ EL + Sbjct: 498 YYTLVASNKLAVEKG--SSFKNFEKSAYADGSYFDK-YLTHDYFAAVSPKVQELFKGIAV 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W EL+ VKT G+ NS MA+AP +I+ I S SI P Sbjct: 555 PTIADWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP---------------- 598 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +++R E + + Y + E IP + +A++ D +I+ Sbjct: 599 -----IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVY 644 Query: 861 SRRQKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ P G + L + A+ G+KT YY+R+ Sbjct: 645 AAATEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|110806692|ref|YP_690212.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 5 str. 8401] gi|110616240|gb|ABF04907.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella flexneri 5 str. 8401] gi|281602051|gb|ADA75035.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017] gi|313648325|gb|EFS12769.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2a str. 2457T] gi|332753900|gb|EGJ84275.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-671] gi|332755582|gb|EGJ85945.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2747-71] gi|332765625|gb|EGJ95838.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2930-71] gi|333015921|gb|EGK35257.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-304] Length = 714 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D + T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSCITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|30064042|ref|NP_838213.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 2457T] gi|56480159|ref|NP_708489.2| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 301] gi|30042298|gb|AAP18023.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella flexneri 2a str. 2457T] gi|56383710|gb|AAN44196.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella flexneri 2a str. 301] Length = 701 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 189/658 (28%), Positives = 306/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D + T+ TAVR L Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFSRTVETAVRGL 429 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCITLPT 549 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 639 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|191167117|ref|ZP_03028938.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] gi|190902899|gb|EDV62627.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] Length = 714 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|227502984|ref|ZP_03933033.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|227076045|gb|EEI14008.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] Length = 720 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 187/672 (27%), Positives = 311/672 (46%), Gaps = 71/672 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332 DF+ + Y F F+ +LG Y Y L R + + F RV+M L L + Sbjct: 86 DFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLGD 144 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + E A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 145 GDGE-LAERLVDEIMTGRFQPATPTFLNAGKQQRGELVSCFLLRIEDNMESIGRSINSAL 203 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Y Sbjct: 204 QLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVY 263 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ Sbjct: 264 LNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNDDMYLFSP---YDVE 320 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YGK F +I+ E+YE + I+ +KI+A ++ + + FE+G+P+I ++D N Sbjct: 321 RVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMYEDTVNR 379 Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFD 617 +P + ++ SNLC+EI +NS+SE A CNLGS+N+ D Sbjct: 380 ANPVK-TSRINMSNLCSEILQVNSASELNADLSYDQVGNDISCNLGSLNIAM-----TMD 433 Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + T+ TA+R L +V D + ++ +K N AIGLG M L HI Y S Sbjct: 434 SPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIKYGS 493 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLA 730 E ++ + I + A+ AS ++A+ERG ++ F S + G F P + Sbjct: 494 EEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPESDYASGEFFDSYDPAEFQPRTE 553 Query: 731 EVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +V+ D ++ + W ELK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 554 KVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIAS 613 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + ++ E I + Y + N D+L+ Sbjct: 614 KIEIRK------------------------EGKIGRVYYPAAHMDN-----DNLEYFK-D 643 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++EI ++++ + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 644 SYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRVR 703 Query: 907 SATSVEKSTLKG 918 ++E + ++G Sbjct: 704 Q-MALEGTEIEG 714 >gi|226365903|ref|YP_002783686.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus opacus B4] gi|226244393|dbj|BAH54741.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus opacus B4] Length = 711 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 188/663 (28%), Positives = 297/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + VA+ LA + E+ A Sbjct: 87 DHAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---EELAT 143 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 144 KLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 203 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + VR GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 204 VALLLSNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 263 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + Sbjct: 264 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADIN 323 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + + YE D+ K KI A ++ + + FE+G+P+I ++D N +P G V Sbjct: 324 VTEKYYEMVDDKRIRK--SKIKAREFFQTVAELQFESGYPYIMYEDTVNRANPI--AGKV 379 Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ E CNLGS+N+ D A TI T Sbjct: 380 THSNLCSEILQVSTPSEFNDDLSYSHIGKDISCNLGSLNIA-----KTMDSPDFAQTIET 434 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 ++R L V D + ++ KK+N AIGLG M L I Y S E ++ + Sbjct: 435 SIRALTAVADQTSIDSVPSIKKANDEGHAIGLGQMNLHGYLARERIHYGSDEGIDFTNIY 494 Query: 687 MEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + FHAI AS E+A+ERG Y + F S + G + + E + E L + Sbjct: 495 FYTVVFHAIRASNEIAKERGTYFAGFPESKYASGEYFDKYTDQVWEPKTERVRQLFADAG 554 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 +P W ELK V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 555 LHIPTQDDWRELKASVQQHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKI 614 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G +L N+ N+E D A+EI + Sbjct: 615 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 643 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 644 IDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 702 Query: 916 LKG 918 ++G Sbjct: 703 VEG 705 >gi|281413956|ref|ZP_06245698.1| ribonucleotide-diphosphate reductase subunit alpha [Micrococcus luteus NCTC 2665] Length = 693 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 189/673 (28%), Positives = 298/673 (44%), Gaps = 76/673 (11%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y+ F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 61 FEFVRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGD 120 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + F +TPT NSG + +L SCFL + D++ I + Sbjct: 121 QE---LATHLVDEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSAL 177 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA Y Sbjct: 178 QLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 237 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 238 LNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDVE 294 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F EI+ E Y D IK KISA ++ + + FE+G+P++ F+D N Sbjct: 295 RVYGVPFSEISVTEKYYEMVDDARIKK-TKISAREFFQTIAEIQFESGYPYVVFEDTVNA 353 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617 +P + G + SNLC+EI S + E CNLGS+N+ D Sbjct: 354 ANPIK--GRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMD 406 Query: 618 YDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++ TA+R L V + + ++ K N AIGLG M L H+ Y S Sbjct: 407 SPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLHGYLAREHVHYGS 466 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIG 727 E ++ + + FHA+ AS +A E G + F+ S + G F + Sbjct: 467 EEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATE 526 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +AE+ + + ++ W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 527 RVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVPPTGSISYINNSTSSIHPVAS 586 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + + K G +L NE +L+Y++ Sbjct: 587 KIEIRKEGKLGRVYYPAPYLTNE-------------NLEYYE------------------ 615 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI +I++ + + +DQ SL L+ D + + L+ AW G+KT YY+R Sbjct: 616 DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWRKGIKTIYYIRL 675 Query: 906 RSATSVEKSTLKG 918 R ++E + ++G Sbjct: 676 RQ-LALEGTEVEG 687 >gi|227537624|ref|ZP_03967673.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|227242510|gb|EEI92525.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] Length = 701 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 171/611 (27%), Positives = 289/611 (47%), Gaps = 66/611 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382 VA+ L L E +A+E+ + + + +TPT N+G R +L SCFL + D+L G Sbjct: 123 VAVALFLAREEGVAKAIEYAEIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNG 182 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+ GG+ + + +R G I G G++ GV+P +K+ DT NQ G Sbjct: 183 IGYAVDSAMKLSSIGGGVSFNISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLG 242 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R GA YL +H D+EEFLD +K D++ R ++ +PD FM+ ++ L Sbjct: 243 QRPGAGAVYLNIFHSDIEEFLDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLI 302 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P V + Y E ++ YE IK +KI+A L K+ E+G+P+I Sbjct: 303 YPHTVMQEYGQYLDELDMDL-MYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIF 360 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAH 610 FK+ N +G V SNLCTEI +N +E + CNLGS+N+ Sbjct: 361 FKENANREHALNGLGKVKFSNLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNVATV 420 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N ++ T++TA+R L V D+ + + K+N ++GLG M L Sbjct: 421 MDNK-----RIKETVKTAMRALTVVSDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAK 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER---------GAYSSFKGSLWDQGV 720 I Y S EA++ A+ ++++++ AS+E+A+ER AY+ G+ +D+ Sbjct: 476 SFIMYESDEALDFANTFFMMMNYYSLEASMEIAKERQRTFVGCEKSAYAD--GTYFDK-Y 532 Query: 721 FPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D + +V++ M+ + W +LK++VK G+ ++ +AIAP + + I + Sbjct: 533 LSRDYMPKSDKVKELFEGMHIPTIEDWAQLKEQVKEHGVYHAYRLAIAPNQSTSYIMNAT 592 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 S+ P +V+ ++ R+ D + Y + + Sbjct: 593 ASVMP---------------------IVDIIEVREYGDSTTYYPMPY----------LTN 621 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898 D +A+++D M ++ S Q+ IDQ S L+ + + S + L Y A +GLK Sbjct: 622 DNYFYFKSAYDMDQMKVLRLISVIQRHIDQGVSTILHTNSKDSTRDLAKYYIYAHKLGLK 681 Query: 899 TTYYLRSRSAT 909 + YY R+R +T Sbjct: 682 SLYYTRTRKST 692 >gi|238695378|ref|YP_002922571.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage JS10] gi|220029514|gb|ACL78448.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage JS10] Length = 751 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 204/794 (25%), Positives = 340/794 (42%), Gaps = 86/794 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G F+++++ ++ C G Q + + E ++ DG++ D++ + Sbjct: 1 MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKTHLRDGMTTKDIQNLTVK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258 + LI +EP+Y V A+ L+ LR+EV +P+ H C+ PE R Sbjct: 60 VAANLISVEEPDYQYVAAKQLMFALRKEVYGQF--EPRSFIDHISYCVNEGKYDPELLSR 117 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 Y E ++ +L + +K+ERDF Y G L ++Y + G E Sbjct: 118 YSAE--------------EITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYET 163 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ F + +G+AL + E R + FY+ +S+ TP + + T Q SSC + Sbjct: 164 PQ--FAIMCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVV 221 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R G+ I K GVIPF K Sbjct: 222 IEAGDSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQT 281 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA AY WH++VE L L+ N G D R M+ + DL M+R Sbjct: 282 AVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERF 341 Query: 494 TQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +N TLFSP E+ +L+ Y ++ E E YE I+ ++I A L+ +T Sbjct: 342 GKNDYITLFSPHEMGGELYYSYFEDQERFRELYEAAEKDPSIRK-KRIKARDLFELFMTE 400 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSIN 606 T + F D N +P + + SNLC EI + NS E +C L + Sbjct: 401 RSGTARIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSA-- 458 Query: 607 LLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 F + FD+ DK+ VR LDN++D + + +A K+ R +G+G+ + Sbjct: 459 ----FVLDNFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAKK-RRNLGVGVTNY 513 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + L Y +A ++ E E + + I AS++LA+E+G + + W +G PI Sbjct: 514 AAWLASNFASYE--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPI 571 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + D++A W L++ + G+RNS A+ P + + + + I+ Sbjct: 572 D---WYNKKIDQIAAPNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIE 627 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K + G+F V + N + L+D A + GN K Sbjct: 628 PPRGPVSIKESKEGNFRQV---VPNVEHNQGLYDYA------WSLAKKGN---------K 669 Query: 844 IHATAFEIDPMWLIESASRR-----QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 + T I W+ +SAS Q + +++ LD D +Y W G K Sbjct: 670 PYLTQVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLD-------DLLY--FWYFGGK 720 Query: 899 TTYYLRSRSATSVE 912 YY +R + + Sbjct: 721 NLYYHNTRDGSGTD 734 >gi|307257035|ref|ZP_07538811.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864519|gb|EFM96426.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 756 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ +I Sbjct: 5 LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ + P TH + +Y Sbjct: 65 AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 KA L + ++ L + L + RD F Y ++ L +Y + + G E Q + Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + K R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSSIRQGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+ D + ++FE Y YE+ + R + AV L+ ++ Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL N +++ LA + VR LD ++D + ++ AK + R++G+G++ Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578 Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDS + EL T L W+ L+ +K G+RNS ++ P+ T + I + Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + +K++ G VV + + LWD I D+ + +G + Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891 QK+IDQA S N D + K+L Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720 Query: 892 AWLMGLKTTYYLRSR 906 A+ GLKT YY +R Sbjct: 721 AYKYGLKTLYYQNTR 735 >gi|307250238|ref|ZP_07532193.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857724|gb|EFM89825.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 756 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ +I Sbjct: 5 LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ + P TH + +Y Sbjct: 65 AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 KA L + ++ L + L + RD F Y ++ L +Y + + G E Q + Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + K R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+ D + ++FE Y YE+ + R + AV L+ ++ Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL N +++ LA + VR LD ++D + ++ AK + R++G+G++ Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578 Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDS + EL T L W+ L+ +K G+RNS ++ P+ T + I + Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + +K++ G VV + + LWD I D+ + +G + Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891 QK+IDQA S N D + K+L Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720 Query: 892 AWLMGLKTTYYLRSR 906 A+ GLKT YY +R Sbjct: 721 AYKYGLKTLYYQNTR 735 >gi|300916823|ref|ZP_07133527.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] gi|300415889|gb|EFJ99199.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] Length = 701 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N +SE CNLGS+N +AH D A T+ TAVR L Sbjct: 375 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 429 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 489 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPT 549 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 639 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|300771014|ref|ZP_07080891.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingobacterium spiritivorum ATCC 33861] gi|300762287|gb|EFK59106.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingobacterium spiritivorum ATCC 33861] Length = 701 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 171/611 (27%), Positives = 289/611 (47%), Gaps = 66/611 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382 VA+ L L E +A+E+ + + + +TPT N+G R +L SCFL + D+L G Sbjct: 123 VAVALFLAREEGVAKAIEYAEIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNG 182 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+ GG+ + + +R G I G G++ GV+P +K+ DT NQ G Sbjct: 183 IGYAVDSAMKLSSIGGGVSFNISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLG 242 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R GA YL +H D+EEFLD +K D++ R ++ +PD FM+ ++ L Sbjct: 243 QRPGAGAVYLNIFHSDIEEFLDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLI 302 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P V + Y E ++ YE IK +KI+A L K+ E+G+P+I Sbjct: 303 YPHTVMQEYGQYLDELDMDL-MYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIF 360 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAH 610 FK+ N +G V SNLCTEI +N +E + CNLGS+N+ Sbjct: 361 FKENANREHALNGLGKVKFSNLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNIATV 420 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N ++ T++TA+R L V D+ + + K+N ++GLG M L Sbjct: 421 MDNK-----RIKETVKTAMRALTVVSDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAK 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER---------GAYSSFKGSLWDQGV 720 I Y S EA++ A+ ++++++ AS+E+A+ER AY+ G+ +D+ Sbjct: 476 SFIMYESDEALDFANTFFMMMNYYSLEASMEIAKERQRTFVGCEKSAYAD--GTYFDK-Y 532 Query: 721 FPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D + +V++ M+ + W +LK++VK G+ ++ +AIAP + + I + Sbjct: 533 LNRDYMPKSDKVKELFEGMHIPTIEDWAQLKEQVKEHGVYHAYRLAIAPNQSTSYIMNAT 592 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 S+ P +V+ ++ R+ D + Y + + Sbjct: 593 ASVMP---------------------IVDIIEVREYGDSTTYYPMPY----------LTN 621 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898 D +A+++D M ++ S Q+ IDQ S L+ + + S + L Y A +GLK Sbjct: 622 DNYFYFKSAYDMDQMKVLRLISVIQRHIDQGVSTILHTNSKDSTRDLAKYYIYAHKLGLK 681 Query: 899 TTYYLRSRSAT 909 + YY R+R +T Sbjct: 682 SLYYTRTRKST 692 >gi|46143781|ref|ZP_00134248.2| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208466|ref|YP_001053691.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae L20] gi|190150314|ref|YP_001968839.1| ribonucleoside-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251075|ref|ZP_07337261.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307245898|ref|ZP_07527983.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307252628|ref|ZP_07534521.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254870|ref|ZP_07536695.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259313|ref|ZP_07541042.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261474|ref|ZP_07543144.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263657|ref|ZP_07545268.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097258|gb|ABN74086.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915445|gb|ACE61697.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302650085|gb|EFL80255.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853258|gb|EFM85478.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306859873|gb|EFM91893.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862167|gb|EFM94136.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866680|gb|EFM98539.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868826|gb|EFN00633.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871034|gb|EFN02767.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 756 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ +I Sbjct: 5 LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ + P TH + +Y Sbjct: 65 AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 KA L + ++ L + L + RD F Y ++ L +Y + + G E Q + Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + V+ L + K R FY+ S+F TP + +G R P Q SSC L Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I +A + KY G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347 Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+ D + ++FE Y YE+ + R + AV L+ ++ Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 TG +I D CN SP V + SNLC EI L N + E A+C Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL N +++ LA + VR LD ++D + ++ AK + R++G+G++ Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578 Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDS + EL T L W+ L+ +K G+RNS ++ P+ T + I + Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + +K++ G VV + + LWD I D+ + +G + Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891 QK+IDQA S N D + K+L Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720 Query: 892 AWLMGLKTTYYLRSR 906 A+ GLKT YY +R Sbjct: 721 AYKYGLKTLYYQNTR 735 >gi|170683654|ref|YP_001744826.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SMS-3-5] gi|170521372|gb|ACB19550.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli SMS-3-5] Length = 714 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 192/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+S+ CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASDYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 SNWQPKTAKVGELFARSGVTLPTREMWAQLRDDVMCYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|239917557|ref|YP_002957115.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Micrococcus luteus NCTC 2665] gi|239838764|gb|ACS30561.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Micrococcus luteus NCTC 2665] Length = 725 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 189/673 (28%), Positives = 298/673 (44%), Gaps = 76/673 (11%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y+ F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 93 FEFVRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGD 152 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + F +TPT NSG + +L SCFL + D++ I + Sbjct: 153 QE---LATHLVDEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSAL 209 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA Y Sbjct: 210 QLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 269 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 270 LNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDVE 326 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F EI+ E Y D IK KISA ++ + + FE+G+P++ F+D N Sbjct: 327 RVYGVPFSEISVTEKYYEMVDDARIKK-TKISAREFFQTIAEIQFESGYPYVVFEDTVNA 385 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617 +P + G + SNLC+EI S + E CNLGS+N+ D Sbjct: 386 ANPIK--GRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMD 438 Query: 618 YDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++ TA+R L V + + ++ K N AIGLG M L H+ Y S Sbjct: 439 SPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLHGYLAREHVHYGS 498 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIG 727 E ++ + + FHA+ AS +A E G + F+ S + G F + Sbjct: 499 EEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATE 558 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +AE+ + + ++ W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 559 RVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVPPTGSISYINNSTSSIHPVAS 618 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + + K G +L NE +L+Y++ Sbjct: 619 KIEIRKEGKLGRVYYPAPYLTNE-------------NLEYYE------------------ 647 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI +I++ + + +DQ SL L+ D + + L+ AW G+KT YY+R Sbjct: 648 DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWRKGIKTIYYIRL 707 Query: 906 RSATSVEKSTLKG 918 R ++E + ++G Sbjct: 708 RQ-LALEGTEVEG 719 >gi|12642667|gb|AAK00339.1| ribonucleotide reductase large subunit [Bovine herpesvirus 2] Length = 784 Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 177/599 (29%), Positives = 275/599 (45%), Gaps = 61/599 (10%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F+N L S + +TP + N GT SC+L P A A LA +G + Sbjct: 200 FFNNLYSHAIVPATPAMLNLGTTGCYTGSCYLIN-PQ-------AQTSQAALAAITGNVS 251 Query: 402 NDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 + G+G + N G +P LK + A N+ +R VC Y+E WH D Sbjct: 252 SILAKNGGVGLCMQSLNDAQAGQNSSVPVLKALDSLVAAYNKNSRRPTGVCVYVEPWHSD 311 Query: 459 VEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L R G++ +R ++ TA W+PDLF +R+ ++ WTLF +L Sbjct: 312 ILALLRTRGVLAGEEAQRCDNIFTALWMPDLFFERLIRYLNGDKDMHWTLFDHKTGGELA 371 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 LYG EFE Y ER+ GE R I+ A+ R T TG P++ FKD N Sbjct: 372 SLYGAEFEKKYVELEREG-LGERVSIRDIT-YAIVRSAAT----TGSPFVMFKDAVNRHY 425 Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 G + SNLCTEI + + VCNLGS+N+ + FD+D+L S +R V Sbjct: 426 IYDTQGEAIACSNLCTEIVHPADQNMSGVCNLGSVNVAHCVVDGVFDFDRLRSAVRACVL 485 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +++ +ID + ++ + R++G+G+ G +A + + S E E + Sbjct: 486 MVNVMIDSTSLPTVQCRRGQNKLRSMGIGMQGLHTACLKMGLDMVSQEFRRTNKLIAEVM 545 Query: 691 SFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWD 747 A+ AS L GA + F S++ G F + G+ +E W+ Sbjct: 546 LLSAMQASNALCMH-GAPPFREFGRSMYRNGKFHWEGFPGVTPAFPEE----------WE 594 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 EL++ +K G+RNS +A+ PT T + + VS+S P++ NL+ K SG+ N L+ Sbjct: 595 ELRRNIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPTFTNLFSKVTKSGEVLRPNVLLL 654 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD----------DLKKIHATAFEIDPMWLI 857 EL R +D +S K D S+ + PD L++ TAF+ + LI Sbjct: 655 KEL--RRTFDGPRLS--KVMD-SLDKHQWTPDLAIPCLDEASPLRRFK-TAFDYNQEDLI 708 Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 + + R ++D +QSL LY+ E + L + A+ GLKT YY + R AT+ Sbjct: 709 DLCADRAPYVDHSQSLTLYVTERADGTLPASMLTRLLVHAYKRGLKTGMYYCKVRKATN 767 >gi|194432998|ref|ZP_03065281.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] gi|194418725|gb|EDX34811.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] Length = 701 Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 429 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 489 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 549 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 639 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|320180202|gb|EFW55138.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii ATCC 9905] gi|332088655|gb|EGI93768.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 155-74] Length = 714 Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|291326471|ref|ZP_06124645.2| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] gi|291314338|gb|EFE54791.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] Length = 710 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 186/672 (27%), Positives = 304/672 (45%), Gaps = 72/672 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF+ + Y F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 77 DFEFIKALFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLA-- 134 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 E A + + + + F +TPT N G + +L SCFL + D++ I ++ Sbjct: 135 -QGSESLAKLYVDEIITGRFQPATPTFLNCGKKQRGELISCFLLRIEDNMESIGRSVNSA 193 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ T +R GA I +S GV+P +K+ D NQ G R+GA Sbjct: 194 LQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 253 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP ++ + Sbjct: 254 YLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQDMYLFSPYDIERI 313 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E + + Y + IK + KI+A ++ + + FE+G+P+I F+D N Sbjct: 314 YGVPMSEISVT-DKYHEMVNNKAIKKY-KINAREFFQTLAEIQFESGYPYILFEDTANRA 371 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDY 618 +P G ++ SNLC+EI +N S + CNLGS+N+ D Sbjct: 372 NPI--AGRINMSNLCSEILQVNRPSVYEDDLSYQQIGKDISCNLGSMNIA-----KTMDS 424 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A +I AVR L V D+ + ++ + N AIGLG M L HI Y S Sbjct: 425 PDFAQSIAAAVRALSAVSDMSDIRSVPSIAEGNRQSHAIGLGQMNLHGYLAREHIYYGSE 484 Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGL----- 728 EA++ + ++++A+ S +LA ER A+ F+ S + G + I++I L Sbjct: 485 EALDFTNIYFYAVTYYALKTSNQLAIERKTAFVGFEHSTYASGDYFDKYINNIWLPKTQT 544 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ + +R W LK+ V T G+ N N AI PT +I+ I + SI P Sbjct: 545 VQELFRRSGIEIPTREDWQALKQSVITYGIYNQNLQAIPPTGSISYINNSTSSIHPIVSR 604 Query: 789 LYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + + K G F+ NE N+E D Sbjct: 605 IEIRKEGKIGRVYYPAPFMTNE-----------------------NLEYYQD-------- 633 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+R R Sbjct: 634 AYQIGPEKIIDTYAMATQHVDQGLSLTLFFKDDATTRDINRAQIYAWRKGIKTLYYIRLR 693 Query: 907 SATSVEKSTLKG 918 T++E + ++G Sbjct: 694 Q-TALEGTEVEG 704 >gi|13508063|ref|NP_110012.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma pneumoniae M129] gi|2500208|sp|P78027|RIR1_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|1674206|gb|AAB96160.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma pneumoniae M129] Length = 721 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 167/613 (27%), Positives = 281/613 (45%), Gaps = 69/613 (11%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381 RV M + +A++ + + F +TPT N+G + + SC+L + D++ Sbjct: 127 RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNME 186 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A+ L+K GG+ T +R GA I +S G+IP +K+ D+ NQ Sbjct: 187 SIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKLLEDSFSYANQL 246 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R+GA YL H DV +FLD ++ D++ R ++ IPD+ N L Sbjct: 247 GQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKNNEEMAL 306 Query: 502 FSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 FSP D+++ YGK + + YE A++ K F I+A ++ + + FE+G+ Sbjct: 307 FSP---YDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVAELHFESGY 361 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSIN 606 P+I F D N R+ H + SNLC+EI S+ E CNLGS+N Sbjct: 362 PYILFDDTVNRRNA--HPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLN 419 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQS 665 + + + + ++ A+ LD V + N T +K N + A+GLG M Sbjct: 420 IAKAMESG----PEFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHG 475 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------GSLWDQG 719 L I Y SPEA++ + +++HA AS ELA E+G + +F+ GS +D+ Sbjct: 476 FLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKY 535 Query: 720 V-----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + F + + + + +R W EL ++ G+ NS+ +AIAPT +I+ Sbjct: 536 IKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISY 595 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ V ++ +N +D + Y DG Sbjct: 596 LSSCTPSLQPVVSPVEVRKEGRLGRIYVPAYQLN----KDSYP-------FYKDG----- 639 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I A+ Q+ +DQA SL L++ D+ + + L+ Y A+ Sbjct: 640 -------------AYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAF 686 Query: 894 LMGLKTTYYLRSR 906 G + YY+R R Sbjct: 687 KKGCSSIYYVRVR 699 >gi|309795134|ref|ZP_07689553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|308121105|gb|EFO58367.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] Length = 701 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 411 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|193071023|ref|ZP_03051951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|218696272|ref|YP_002403939.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 55989] gi|192955681|gb|EDV86156.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|218353004|emb|CAU98820.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli 55989] Length = 714 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 195/682 (28%), Positives = 316/682 (46%), Gaps = 80/682 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------Q 718 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + Q Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQ 539 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + + + E+ + +R W +L+ V G+ N N A+ PT +I+ I Sbjct: 540 GNWQPKTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598 Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + + K +G F+ NE + A+ D Sbjct: 599 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD-------------- 637 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 A+EI +I++ + + +DQ SL L+ D + + ++ AW G Sbjct: 638 ----------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687 Query: 897 LKTTYYLRSRSATSVEKSTLKG 918 +KT YY+R R ++E + ++G Sbjct: 688 IKTLYYIRLRQ-MALEGTEIEG 708 >gi|255324327|ref|ZP_05365448.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] gi|255298657|gb|EET77953.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] Length = 720 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 181/675 (26%), Positives = 308/675 (45%), Gaps = 77/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DF + Y F F+ +LG Y Y L R + + F RV+M Sbjct: 86 DFSFIKELFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 145 GDAGLAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ +PD+ + +N LFSP D+ Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVER 321 Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YGK F +I+ E+YE + I+ +KI+A ++ + + FE+G+P+I F+D N Sbjct: 322 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 380 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDY 618 +P + ++ SNLC+EI +NS+SE A CNLGS+N+ D Sbjct: 381 NPVK-TSWINMSNLCSEILQVNSASEFNADLTYEELGSDISCNLGSLNIAM-----TMDS 434 Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A+T+ TA+R L V D + ++ ++ N AIGLG M L HI Y S Sbjct: 435 PDFANTVETAIRGLTAVADKTSIDSVPSVRRGNDESHAIGLGQMNLHGYLGREHIEYGSE 494 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PID---SIGL 728 E ++ + + + A+ AS ++A+ERG Y + S + G F P + Sbjct: 495 EGLDFTNAYFAAVLYAALRASNKIARERGEYFTELPQSEYASGEFFDRYDPEEFKPKTKK 554 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +++ S W++LK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 555 VQELFDASSIHTPSAQDWEDLKQDVAKYGLYNRNLQAVPPTGSISYINNSTSSIHPIASK 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844 + ++ +G IG + + +D + Sbjct: 615 IEIRK----------------------------------EGKIGRVYYPAPHMDNDNLEY 640 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++EI ++++ + K++DQ SL L+ D + ++++ AW G+KT YY+ Sbjct: 641 FKDSYEIGYEKIVDTYAVATKYVDQGLSLTLFFKDTATTREVNRAQIYAWRKGIKTLYYI 700 Query: 904 RSRSATSVEKSTLKG 918 R R ++E + ++G Sbjct: 701 RLRQ-MALEGTEVEG 714 >gi|300815922|ref|ZP_07096146.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] gi|300531851|gb|EFK52913.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] Length = 701 Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 193/677 (28%), Positives = 309/677 (45%), Gaps = 91/677 (13%) Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLA 329 +Y RDF +LG Y Y L +G R + F RV M L Sbjct: 66 RYSRDFVITLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALT 123 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388 L + + E A++ + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 124 LAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 182 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 183 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 242 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ +NA LFSP Sbjct: 243 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---Y 299 Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I ++D Sbjct: 300 DVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDT 358 Query: 567 CNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANN 614 N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 359 VNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH---- 411 Query: 615 QFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D A T+ TAVR L V D+ + ++ + N AIGLG M L I Sbjct: 412 TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIA 471 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------QGVFPI 723 Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + QG + Sbjct: 472 YGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQP 531 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + E+ + +R W +L+ V G+ N N A+ PT +I+ I + SI Sbjct: 532 KTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 590 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K +G F+ NE + A+ D Sbjct: 591 PIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------------------- 624 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 625 -----AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLY 679 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 680 YIRLRQ-MALEGTEIEG 695 >gi|293364079|ref|ZP_06610815.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma alligatoris A21JP2] gi|292552569|gb|EFF41343.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma alligatoris A21JP2] Length = 726 Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 168/594 (28%), Positives = 277/594 (46%), Gaps = 86/594 (14%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T +R Sbjct: 156 YQPATPTFLNAGKKQRGEYISCYLLRVEDNMESIARAISTSLQLSKRGGGVALCLTNLRE 215 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGA I ++ GVIP +K+ D+ NQ G+R+GA YL H DV FLD ++ Sbjct: 216 LGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGVVYLSAHHPDVMTFLDSKREN 275 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD+ + +N +LFSP +V ++ + I E Y Sbjct: 276 ADEKIRIKSLSLGLVVPDITFELAKKNEDMSLFSPYDVEKVYKKPFSDISITKEYYNMLN 335 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 ++ K + +SA + + + FE+G+P++ F D N RS G + SNLC+EI Sbjct: 336 NKAIKKTY--VSARKFFTSIAELHFESGYPYLLFDDTVNDRSALP--GRIIMSNLCSEIA 391 Query: 590 LNSSSE------------ETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNV 635 SS E CNLGS+N+ L H +K + +I ++ L+++ Sbjct: 392 QPSSPSTYNADLSYKTMGEDIACNLGSMNIDKLMHAG------EKFSESIYRSIYALNHI 445 Query: 636 ---IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 D+ + TIEK K N RAIGLG M L + HI Y S EAVE D + Sbjct: 446 STNSDLSSAPTIEKGNKKN---RAIGLGAMNLHGFLAVNHIFYNSQEAVEFTDLFFYTFA 502 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDELAM 738 +HA AS L ++ G + F+ + + G + D +AE+ + + Sbjct: 503 YHAFKASNRLVKDGFGKFEGFENTKFATGEY-FDKYTKVSDEEYKPKHASVAELFRKHNV 561 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W EL K ++ G+ NS+ MAIAPT +I+ + G + S+ P ++ V+ Sbjct: 562 HIPTKQEWKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTPSLQPVVSDVEVRK----- 616 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT-AFEIDP 853 +G +G + +I D+ K+ + A+E+ P Sbjct: 617 -----------------------------EGKLGRVYVPAYKISDENKEFYKLGAYEVGP 647 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 M +I+ + QK IDQA SL L++ D + + L+ Y A+ + YY+R R Sbjct: 648 MPIIDIVAAAQKHIDQAISLTLFVKDTVTTRDLNKAYIYAFSKKCASIYYVRIR 701 >gi|306836785|ref|ZP_07469745.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium accolens ATCC 49726] gi|304567331|gb|EFM42936.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium accolens ATCC 49726] Length = 720 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 187/672 (27%), Positives = 310/672 (46%), Gaps = 71/672 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332 DF+ + Y F F+ +LG Y Y L R + + F RV+M L L + Sbjct: 86 DFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLGD 144 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + E A + + + F +TPT N+G + +L SCFL + D++ I ++ Sbjct: 145 GDGE-LAERLVDEIMTGRFQPATPTFLNAGKQQRGELVSCFLLRIEDNMESIGRSINSAL 203 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Y Sbjct: 204 QLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVY 263 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ Sbjct: 264 LNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNDDMYLFSP---YDVE 320 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YGK F +I+ E+YE + I+ +KI+A ++ + + FE+G+P+I ++D N Sbjct: 321 RVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMYEDTVNR 379 Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFD 617 +P + ++ SNLC+EI +NS SE A CNLGS+N+ D Sbjct: 380 ANPVK-TSRINMSNLCSEILQVNSPSELNADLSYDQVGNDISCNLGSLNIAM-----TMD 433 Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + T+ TA+R L +V D + ++ +K N AIGLG M L HI Y S Sbjct: 434 SPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGS 493 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLA 730 E ++ + I + A+ AS ++A+ERG ++ F S + G F P + Sbjct: 494 EEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPESDYASGEFFDSYDPAEFQPRTE 553 Query: 731 EVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +V+ D ++ + W ELK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 554 KVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIAS 613 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + ++ E I + Y + N D+L+ Sbjct: 614 KIEIRK------------------------EGKIGRVYYPAAHMDN-----DNLEYFK-D 643 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++EI ++++ + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 644 SYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRVR 703 Query: 907 SATSVEKSTLKG 918 ++E + ++G Sbjct: 704 Q-MALEGTEIEG 714 >gi|167044788|gb|ABZ09456.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG8D6] Length = 885 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 165/642 (25%), Positives = 299/642 (46%), Gaps = 58/642 (9%) Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337 A LK F++++ +G L +F + +E+ + M+V+ L +K Sbjct: 188 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 247 Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ I + A++ Sbjct: 248 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQSIMKTTSDAALIF 307 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA +E Sbjct: 308 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 367 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513 WH D+E+F+ + G +++ W D + V G +TL SP + Sbjct: 368 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 417 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571 + GEI + I +A +++ P + F D N + Sbjct: 418 --------------NSSAGEINAHQLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 457 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626 + G + ++N C E +L CNLGSI NL+ A+ Q FD+ + I Sbjct: 458 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRTADGQYEFDWQRYEEIII 513 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY S E + + Sbjct: 514 KTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 573 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E ++++++ SV LA+ RG + + + +G P+ G + ++E + W Sbjct: 574 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 625 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L ++++ G+RN +APT T++ + S ++P++ ++ K G F N Sbjct: 626 GALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 685 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 LK+ +L+ + +++ + + GS+ + IPD ++ I TA +I + + + Q W Sbjct: 686 EQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 745 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I A + + + ++ + + + Y A MGLK R S Sbjct: 746 ISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGS 787 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 8/101 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A +++ L++ + +L +H S Sbjct: 14 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPD-------KELATQLSDAVLAKLTEHGFS 66 Query: 90 AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 A +E IQD VE +L+ GH I + Y+LYR ER +R Sbjct: 67 ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 107 >gi|331674196|ref|ZP_08374956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] gi|331068290|gb|EGI39685.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] Length = 714 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + I+A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYINARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYASGEYFRQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|167045242|gb|ABZ09901.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG9M20] gi|167045330|gb|ABZ09987.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG10D8] Length = 885 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 165/642 (25%), Positives = 299/642 (46%), Gaps = 58/642 (9%) Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337 A LK F++++ +G L +F + +E+ + M+V+ L +K Sbjct: 188 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 247 Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ I + A++ Sbjct: 248 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQSIMKTTSDAALIF 307 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA +E Sbjct: 308 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 367 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513 WH D+E+F+ + G +++ W D + V G +TL SP + Sbjct: 368 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 417 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571 + GEI + I +A +++ P + F D N + Sbjct: 418 --------------NSSAGEINAHQLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 457 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626 + G + ++N C E +L CNLGSI NL+ A+ Q FD+ + I Sbjct: 458 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRTADGQYEFDWQRYEEIII 513 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY S E + + Sbjct: 514 KTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 573 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E ++++++ SV LA+ RG + + + +G P+ G + ++E + W Sbjct: 574 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 625 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L ++++ G+RN +APT T++ + S ++P++ ++ K G F N Sbjct: 626 GALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 685 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 LK+ +L+ + +++ + + GS+ + IPD ++ I TA +I + + + Q W Sbjct: 686 EQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 745 Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I A + + + ++ + + + Y A MGLK R S Sbjct: 746 ISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGS 787 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 8/101 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A +++ L++ + +L +H S Sbjct: 14 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPD-------KELATQLSDAVLAKLTEHGFS 66 Query: 90 AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 A +E IQD VE +L+ GH I + Y+LYR ER +R Sbjct: 67 ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 107 >gi|193065976|ref|ZP_03047035.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|260845323|ref|YP_003223101.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|192926390|gb|EDV81025.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|257760470|dbj|BAI31967.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|323159822|gb|EFZ45794.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E128010] Length = 714 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 190/680 (27%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|239833483|ref|ZP_04681811.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum intermedium LMG 3301] gi|239821546|gb|EEQ93115.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum intermedium LMG 3301] Length = 722 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 184/660 (27%), Positives = 300/660 (45%), Gaps = 73/660 (11%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y + F F +LG Y Y L +G R +E + VA+ LA Sbjct: 90 FNFVRDLFDEAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALA--- 146 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 147 RGNEQLARDLMEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 206 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 207 QLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 266 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 267 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVERVY 326 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E ++ E Y D I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 327 GMPLTEISVS-EKYREMVDDARIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 384 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A ++ F Sbjct: 385 PID--GRITMSNLCSEILQVSEASVFREDLSYDYLGKDISCNLGSLNIAAAMDSSDF--- 439 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 TI T++R L V D++ ++ + N AIGLG M L I Y S E Sbjct: 440 --GKTIETSIRSLTAVSDMSHIGSVPSVARGNDESHAIGLGQMNLHGYLARERIYYGSEE 497 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIG 727 V+ + +++HAI AS +A E G ++ F+ S + G + P + Sbjct: 498 GVDFTNIYFYTVTYHAIRASNLIAVEAGKSFKGFEKSKYASGEYFDKYTEQLWEP--ATE 555 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + E+ D+ + ++ W +LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 556 RVREIFDKAGIAIPTQDDWRDLKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP--- 612 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +V++++ R E I + Y + N D+L + Sbjct: 613 ------------------IVSKIEIRK---EGKIGRVYYPAAFMTN-----DNLD-YYQD 645 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 646 AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLR 705 >gi|227358545|ref|ZP_03842870.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis ATCC 29906] gi|227161256|gb|EEI46330.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis ATCC 29906] Length = 714 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 184/675 (27%), Positives = 307/675 (45%), Gaps = 78/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + Y + F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 81 DFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGERYLERYEDRVCMVALTLAQG 140 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 T K A + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 141 NT---KLATHLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAVNSA 197 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ T +R GA I +S GV+P +K+ D NQ G R+GA Sbjct: 198 LQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 257 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP +V + Sbjct: 258 YLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERV 317 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E I+ E Y + EI+ +KI A A ++ + + FE+G+P+I F+D N Sbjct: 318 YGVPMSEISIS-EKYTEMVNNAEIRK-KKIKARAFFQTLAEIQFESGYPYIMFEDTVNRA 375 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDY 618 +P G ++ SNLC+EI +NS+SE CNLGS+N+ D Sbjct: 376 NPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDISCNLGSMNIAM-----AMDS 428 Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A T+ A+R L +V + ++ +K N AIGLG M L I Y S Sbjct: 429 PDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMNLHGYLAREGIYYGSE 488 Query: 678 EAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDSIGL 728 E ++ + ++++A+ AS +LA E + + F+ S + G + + Sbjct: 489 EGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEYFDKYLSKQWLPKTQK 548 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + ++ + ++ ++ W +LK + T G+ N N AI PT +I+ I + SI P Sbjct: 549 VHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSISYINHSTSSIHP---- 604 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844 +V ++ R +G IG + + ++ + Sbjct: 605 -----------------IVAPIEIRK-------------EGKIGRVYYPAPFMTNENRHF 634 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A+EI +I++ ++ + IDQ SL L+ DE + + ++ AW G+KT YY+ Sbjct: 635 YQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIYAWRKGIKTLYYI 694 Query: 904 RSRSATSVEKSTLKG 918 R R T++ + +KG Sbjct: 695 RIRQ-TALAGTEIKG 708 >gi|251788643|ref|YP_003003364.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya zeae Ech1591] gi|247537264|gb|ACT05885.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae Ech1591] Length = 715 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 178/629 (28%), Positives = 282/629 (44%), Gaps = 81/629 (12%) Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 +L G R+ M VA+ LA + + ++ V+ + S F +TPT N G R Sbjct: 123 YLENYGERVCM-------VALTLARGDAQLAQQLVD---EMMSGRFQPATPTFLNCGKRQ 172 Query: 366 -PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 +L SCFL + D++ I A+ L+K GG+ T +R GA I +S GV Sbjct: 173 RGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGV 232 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D NQ G R+GA YL H D+ FLD R+ D++ R ++ Sbjct: 233 IPIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVV 292 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPD+ + N LFSP +V ++ + E ++ E Y+ + EI+ I+A Sbjct: 293 IPDITLHLARNNQDMHLFSPYDVERIYGMPLSEISVS-EKYDELVNHPEIRKC-AINARQ 350 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------ 598 ++ + + FE+G+P++ F+D N +P G + SNLC+EI S + E Sbjct: 351 FFQTLAELQFESGYPYLMFEDTVNGNNPV--AGRITMSNLCSEILQVSRASEYQEDLSYR 408 Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNH 651 CNLGS+N+ D LA ++ AVR L V D+ + + + N Sbjct: 409 LVGKDISCNLGSLNI-----AKVMDGGNLAHSVAIAVRALTAVSDMSHINAVPSIAAGNA 463 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710 AIGLG M L I Y S EA++ + +++HA+ S LAQER ++ Sbjct: 464 ESHAIGLGQMNLHGYLAREGILYGSEEALDFTNLYFYTVTYHALLTSSLLAQERNQTFAG 523 Query: 711 FKGSLWDQGVFPIDSIGL----LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSN 762 F S + GVF + E EL M LP W LK+RV G+ N N Sbjct: 524 FADSQYASGVFFDRYLSQEWQPATERVRELFMVAGIALPLREDWLALKRRVMRYGLYNQN 583 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I + SI P +V+ ++ R Sbjct: 584 LQAVPPTGSISYINHATASIHP---------------------IVSRIEIRK-------- 614 Query: 823 DLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 +G +G + + +D ++ + A+EI P +I++ + + +DQ SL L+ Sbjct: 615 -----EGRLGRVYYPAPYMTNDNQRFYQDAYEIGPEKIIDTYAIATRHVDQGLSLTLFFP 669 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 D + + ++ AW G+KT YY+R R Sbjct: 670 DTATTRDINKAQIYAWKKGIKTLYYIRVR 698 >gi|323978714|gb|EGB73796.1| ribonucleotide reductase [Escherichia coli TW10509] Length = 714 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 +L+ DF + A+ + F F+ +LG Y Y L + + + F RV M Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKHYL-EDFADRVTM 132 Query: 327 -GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIF 384 L L + +K A + + + S F +TPT N G R +L SCFL + D++ I Sbjct: 133 VALTLAQGDK-TLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIG 191 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFSP Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP 311 Query: 505 DEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 D+ +YGK F +IA E+Y+ I+ + I+A ++++ + FE+G+P+I Sbjct: 312 ---YDVERVYGKPFADIAISEHYDELVADERIRK-KYINARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ AVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVEIAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAAKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|326914624|ref|XP_003203624.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like, partial [Meleagris gallopavo] Length = 226 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 106/229 (46%), Positives = 149/229 (65%), Gaps = 7/229 (3%) Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 TNG S G++P L+V N+TA V+QGG KR GA YLE WH+D+ EFLDL+KNTG + +R Sbjct: 1 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 60 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q + Sbjct: 61 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----R 115 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V R + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S + Sbjct: 116 VRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 175 Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + Sbjct: 176 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPV 224 >gi|218555223|ref|YP_002388136.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI1] gi|218361991|emb|CAQ99597.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli IAI1] Length = 714 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 193/677 (28%), Positives = 309/677 (45%), Gaps = 91/677 (13%) Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLA 329 +Y RDF +LG Y Y L +G R + F RV M L Sbjct: 79 RYSRDFVITLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALT 136 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388 L + + E A++ + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 137 LAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ +NA LFSP Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---Y 312 Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I ++D Sbjct: 313 DVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDT 371 Query: 567 CNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANN 614 N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 372 VNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH---- 424 Query: 615 QFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D A T+ TAVR L V D+ + ++ + N AIGLG M L I Sbjct: 425 TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIA 484 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------QGVFPI 723 Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + QG + Sbjct: 485 YGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQP 544 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + E+ + +R W +L+ V G+ N N A+ PT +I+ I + SI Sbjct: 545 KTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 603 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K +G F+ NE + A+ D Sbjct: 604 PIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------------------- 637 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 638 -----AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLY 692 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 693 YIRLRQ-MALEGTEIEG 708 >gi|16766118|ref|NP_461733.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|585859|sp|Q08698|RIR3_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha; AltName: Full=R1E protein; AltName: Full=Ribonucleotide reductase 2 gi|49258467|pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|49258468|pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|49258469|pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|49258470|pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|109157244|pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|109157245|pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|1184247|emb|CAA51699.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421356|gb|AAL21692.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|267994923|gb|ACY89808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|321223604|gb|EFX48669.1| Ribonucleotide reductase of class Ib aerobic, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332989684|gb|AEF08667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 714 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + D A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|67920554|ref|ZP_00514074.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501] gi|67858038|gb|EAM53277.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501] Length = 1116 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 132/453 (29%), Positives = 238/453 (52%), Gaps = 31/453 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+++ DG+ + N ++ +V+ AC+ ++V+S + + + DG++ +++ LI Sbjct: 32 KIRVRRRDGSWTALNIVKIRAVVDWACAD-REVNSIALEAGLTTRLRDGITTREIQDNLI 90 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + EP++ + R + L ++ L + + + ++E+ + Sbjct: 91 NCALEMCSPDEPDWRYIAGRLHIWSLWKDTLVS---RGYQYGNYEIVA----------KT 137 Query: 263 GVKARLLHESMMDFDLVYLANDLKY---ERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 + A+ ++ + L + + D ++Y G +L RY L E+PQ Sbjct: 138 KIDAKQYDNRLLTYSTAELQEAGSWINPDWDTDYDYAGAVLLTSRYLLDD-----ELPQE 192 Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ A+ LA E+ + + A FY ++ +TP L N L+SCF+ ++ Sbjct: 193 AFLTCALLLATVESPENRLPWAKRFYEAIAKGKVSLATPILANLRVPGGSLTSCFILSID 252 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L IF + A ++K GG+G + + +R G+ + G N S GVIP++K+ NDTA+A Sbjct: 253 DNLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGVIPWIKLLNDTAIA 312 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGG+R GAV L+ WH+DV EFL+++ GD RR+ +D+ + D FM+RV Sbjct: 313 VNQGGRRAGAVTVGLDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKE 372 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P +V +L +L+G++FE AY E + DR EI ++++++A L++ ++ Sbjct: 373 EWTLVDPYQVKEKLGIELAELWGEKFEEAYGLIEAELDR-EITLYKRVNARELFKTIMRS 431 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 ETG P++ FKD N +P +HVG + NLC Sbjct: 432 QVETGMPYLAFKDTINKANPNKHVGYIPGVNLC 464 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 159/379 (41%), Gaps = 68/379 (17%) Query: 563 FKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETA-VCNLGSINLLAHFANNQFDYD 619 + D P++H+G+ + + CTE N + + A CNL S+NL A+ + DY Sbjct: 787 YDDTYCFSEPKRHLGMFNGILTGQCTESFSNVTPGKFAHCCNLVSLNL-ANIEEEELDY- 844 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +VR+LDN IDI AK N +R +G+G MG L + Y E Sbjct: 845 ----LCNISVRILDNTIDITNPPFNDAKAHNDRYRTVGVGCMGLADWLAKKGLTY---EN 897 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + E + + S+ELA+ER Y++F+GS W +G+ IG ++ D N Sbjct: 898 ITEISNLFEEVGYWCTHTSMELAKERSPYNAFEGSDWSKGLL----IG--SKPVDWFVEN 951 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + + W +L + +KT G+RNS+ AIAP + + + G + SI P Y + G Sbjct: 952 ASKKERWVQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYDKWAKGTI 1011 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + F+ + W YH+ +++ +++ Sbjct: 1012 PIAPPFI-----KESFW--------FYHENKTLEQQKV-------------------VKA 1039 Query: 860 ASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+WID S+ L + DEP + K + AW G K YY+R Sbjct: 1040 VATIQQWIDTGISMELLFNLNQGVYFADEPERCLTAKDIFETLLLAWKEGCKAIYYVR-- 1097 Query: 907 SATSVEKSTLKGVDGKLNA 925 +V+K K D A Sbjct: 1098 ---TVQKDDFKESDNNCTA 1113 >gi|313892094|ref|ZP_07825690.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister microaerophilus UPII 345-E] gi|313119486|gb|EFR42682.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister microaerophilus UPII 345-E] Length = 730 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 185/706 (26%), Positives = 314/706 (44%), Gaps = 104/706 (14%) Query: 288 ERDFAFEYL-GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E DF F L G Y Y L + + + + F R M E A + Sbjct: 87 EYDFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKNLVGDI 145 Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N+G R + SC+L + D++ I + + L+K GG+ T Sbjct: 146 LSNRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLT 205 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R A I G +S GV+P +K+ DT NQ G+R+GA YL H ++ +FLD Sbjct: 206 NLREGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDT 265 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA--- 521 ++ D++ R ++ IPD+ + + LFSP D++ +YGK +I+ Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDIYKVYGKPMTDISITK 322 Query: 522 -YENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 YEN R KV + I+A ++ + + FE+G+P+I ++D N R+P + G + Sbjct: 323 EYENLLRND-----KVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRI 377 Query: 580 HSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI T ++ +E+ + CNLGSIN+ A D I Sbjct: 378 VMSNLCSEIAQVSTASTYTEDMSYYHVGQDICCNLGSINI----AEAMKDGKNFGEMIGR 433 Query: 628 AVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 AV LD V D+NC +I++ + NH AIGLG M L HI Y +PEAV+ Sbjct: 434 AVEALDRVSRASDLNCAPSIKRGNEENH---AIGLGAMNLHGFLSTHHIYYDTPEAVDFT 490 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 D +++A AS +A ++GA++ F S + G + + +EL +T R Sbjct: 491 DMFFYATAYYAFKASHYMAMKKGAFTGFADSEYADGSY-------FKKYTEELNAPKTER 543 Query: 744 LP---------------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + W L + +K G+ N++ +A+APT +I+ + + S+ P Sbjct: 544 VKELFEKYNFYIPTQEDWKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSP 603 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + V+ V ++ +++ + KY++ A Sbjct: 604 VEVRKEGKLGRVYVPAYEIDD------------ENYKYYEKG-----------------A 634 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +E+ P +I+ A+ QK +DQA ++ L++ + + + L+ Y +A+ + YY+R R Sbjct: 635 YEVGPDAIIDVAAAAQKHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVRIR- 693 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + L+G + + + N +C EC+ C Sbjct: 694 -----QDVLEGSEKFEEDSIIKNENKEVR------NCDGSEECQTC 728 >gi|161502143|ref|YP_001569255.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863490|gb|ABX20113.1| hypothetical protein SARI_00166 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 705 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIQNQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 322 YDELLADSHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 378 LCSEILQVNSASRYDDNLDYIHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 492 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 493 TWHALHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A+EI P +I++ Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYEIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699 >gi|303258317|ref|ZP_07344320.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderiales bacterium 1_1_47] gi|302858763|gb|EFL81851.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderiales bacterium 1_1_47] Length = 591 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 178/611 (29%), Positives = 274/611 (44%), Gaps = 96/611 (15%) Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ F VA A ++ Y+ S STP L ++ SCF + Sbjct: 33 PQERFATVAETFASNPAHAQR----IYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYM 88 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D G+ L E L+ GG+G + I + KS GV+P LK+ + + Sbjct: 89 QDTAEGLVNTLSEVNWLSMLGGGVG--------IHVDIRSADDKSVGVMPHLKIYDAACL 140 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 A QG R+G+ A+L+ H D+ +FL++RK TGD RT +++ I D FM+ + ++ Sbjct: 141 AYRQGRTRRGSYAAFLDVDHPDIIQFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS 200 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 D+ +L D + +V +SA +W+++L + +T Sbjct: 201 M--VNADADDSWELRDPHSH------------------RVVEVVSARDIWQRILELRMQT 240 Query: 557 GHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHF 611 G P+I F D N P G+ +H SNLCTEI L +S + TAVC L S+NL H+ Sbjct: 241 GEPYIVFIDAANRALPSWLSDKGLKIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDHW 300 Query: 612 -ANNQFDYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 N QF I + LDNV ID +++E+A+ S R+IG+G +GF + Sbjct: 301 NTNEQF--------IPDVMEFLDNVLQYFIDNAPNSVERARYSALRERSIGIGALGFHAY 352 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L IP S A I I L ++RG K D G Sbjct: 353 LQSKRIPIESVLAKSINYRMFSHIKEECARGDEILCEKRGPCPDAK----DAG------- 401 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPS 785 I R S+ A+AP A+ + I G S SI+P Sbjct: 402 -----------------------------IPRRFSHWNAVAPNASSSLIMGATSPSIEPI 432 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N+Y + +SG + N L+ L++ L + + + + HDGS+ ++E +P ++ + Sbjct: 433 RANIYRQDTLSGAHIIKNKMLIPVLEEYGLNSDEVWTSITAHDGSVQHLEALPQVIRDVF 492 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYY 902 TA EID WLI+ A+ RQ++IDQ QSLNL+ P+ + +++ AW +GLK+ YY Sbjct: 493 KTAQEIDQRWLIDLAADRQEFIDQGQSLNLFF--PADVSIAYLHACHFLAWKVGLKSLYY 550 Query: 903 LRSRSATSVEK 913 RS +K Sbjct: 551 CRSDKLRKADK 561 >gi|197284314|ref|YP_002150186.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus mirabilis HI4320] gi|194681801|emb|CAR41038.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis HI4320] Length = 708 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 184/675 (27%), Positives = 307/675 (45%), Gaps = 78/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + Y + F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 75 DFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGERYLERYEDRVCMVALTLAQG 134 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 T K A + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 135 NT---KLATHLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAVNSA 191 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ T +R GA I +S GV+P +K+ D NQ G R+GA Sbjct: 192 LQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 251 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP +V + Sbjct: 252 YLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERV 311 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E I+ E Y + EI+ +KI A A ++ + + FE+G+P+I F+D N Sbjct: 312 YGVPMSEISIS-EKYTEMVNNAEIRK-KKIKARAFFQTLAEIQFESGYPYIMFEDTVNRA 369 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P G ++ SNLC+EI +NS+SE CNLGS+N+ D Sbjct: 370 NPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDISCNLGSMNIAM-----AMDS 422 Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A T+ A+R L +V + ++ +K N AIGLG M L I Y S Sbjct: 423 PDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMNLHGYLAREGIYYGSE 482 Query: 678 EAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDSIGL 728 E ++ + ++++A+ AS +LA E + + F+ S + G + + Sbjct: 483 EGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEYFDKYLSKQWLPKTQK 542 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + ++ + ++ ++ W +LK + T G+ N N AI PT +I+ I + SI P Sbjct: 543 VHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSISYINHSTSSIHP---- 598 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844 +V ++ R +G IG + + ++ + Sbjct: 599 -----------------IVAPIEIRK-------------EGKIGRVYYPAPFMTNENRHF 628 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A+EI +I++ ++ + IDQ SL L+ DE + + ++ AW G+KT YY+ Sbjct: 629 YQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIYAWRKGIKTLYYI 688 Query: 904 RSRSATSVEKSTLKG 918 R R T++ + +KG Sbjct: 689 RIRQ-TALAGTEIKG 702 >gi|325973167|ref|YP_004250231.1| ribonucleoside-diphosphate reductase, subunit alpha [Mycoplasma suis str. Illinois] gi|323651769|gb|ADX97851.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma suis str. Illinois] Length = 662 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 163/598 (27%), Positives = 302/598 (50%), Gaps = 70/598 (11%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K A E +L++ + +TPT NSG R +L SCFL D + I + + L+K Sbjct: 97 KLANEIADLITRQVYQPATPTFSNSGKKRSGELVSCFLLETEDSINSINYIIATSMQLSK 156 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +RG GA I + + GV+P LK+ + +Q G R+G+ AYL + Sbjct: 157 IGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKILENVFDYADQLGMRRGSGVAYLNIF 216 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ +F+D +K D++ R ++ IPD F++ T+N + +F P+ + + + Sbjct: 217 HFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFLQLATENKNFFIFEPNTIYQKYKVLL 276 Query: 516 KEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + + E Y++ AD+ +K +++SA + ++ + FE+G+P++ + D N + P + Sbjct: 277 SDLNMN-EWYDKLAADKDILK--KELSARNVLTRIAQIQFESGYPYVIYIDNANKQHPLR 333 Query: 575 HVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLA 622 +G + SNLCTEI T+ +E + CNL S+NL+ N + L Sbjct: 334 GLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDVSCNLASLNLV-----NLLEEKDLE 388 Query: 623 STIRTAVRVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 I ++R L V D+ +I+ A +K+N + R++GLG++ F L ++ Y PE Sbjct: 389 KVIDISMRALTAVSDLT--SIKNAPSIRKANESFRSVGLGVLNFTGVLLKNNLAYDDPEV 446 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQGVFPIDSIGLLAEV 732 +E AD I+++++ AS +A+E+ + +F+ GS +DQ + +S +E Sbjct: 447 LEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANGSYFDQ--YLNNSFEPKSEK 504 Query: 733 RDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 EL N P W +LK++V+ G+ N+ +AIAPT +I+ + + SI P Sbjct: 505 VKELLKNIKVPSPEDWAKLKEKVQRDGLYNAYRLAIAPTQSISYLQSATASIQP------ 558 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +++ ++ R L+ +M + + + + + ++ +A++ Sbjct: 559 ---------------IISSIETR-LYGNSM---------TYFPMPFLTKENEHLYKSAYQ 593 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 ID LI+ ++ QK IDQ S LY+ + + + L +Y A GLK+ YY+R+++ Sbjct: 594 IDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYAHHKGLKSLYYVRTKN 651 >gi|157363198|ref|YP_001469965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga lettingae TMO] gi|157313802|gb|ABV32901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga lettingae TMO] Length = 839 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 167/571 (29%), Positives = 270/571 (47%), Gaps = 81/571 (14%) Query: 341 EFYNLLSSFHFMCSTPTLFNSG---------------------------TRHPQLSSCFL 373 EF++LL+S F+ ++PTLFNSG LS+CF+ Sbjct: 80 EFFDLLASRIFIPNSPTLFNSGMGVDYELLYKPLEQMELDDYSKIIQMRNHLHMLSACFV 139 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + GIF A++E A++ K GG+G++++ +R G+ + GT+GK+ G I F+ V N Sbjct: 140 VPVEDSIDGIFTAVKEYALITKAGGGIGSNFSSLRPNGSFVAGTHGKASGPISFMHVFNS 199 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V QG +R+GA+ L H D+ +F+ +K D + N + IP M+R Sbjct: 200 AVSVVEQGYRRRGALMGILNIDHPDIMDFISAKKGN-DGEKVLRFFNISVGIP---MRR- 254 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +L +Y ++ I N+ + EIKV I +KM Sbjct: 255 --------------EELLRIYERDGTIRL-NHSKWHGEKEIKVREII------QKMAQSA 293 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 +ETG P + F N + S+N C EI L + CNLGSI+L + Sbjct: 294 WETGDPGMVFLGEMNRYYALYPHKEIISTNPCGEIGLGAYE----ACNLGSIDLAKLYTQ 349 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 N D+D L R AVR LDNVID+N I+K K+ R +GLG+MGF L+ + IP Sbjct: 350 NGVDWDALEKATRIAVRFLDNVIDVNVFPIDKISKAVKESRRLGLGIMGFADLLYKMDIP 409 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW----DQGVFPIDSIGLL 729 Y S EA +A M F++ H+ S +L +E+G + F+ S + D F +D Sbjct: 410 YDSEEARRLAKNIMAFMALHSHEESSKLGEEKGNFPLFEQSRYHTEDDFVPFSMDESDYD 469 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 E+ + + V RN +AIAPT +I+NI S ++P++ Sbjct: 470 EEIFEHF--------------RNVAPKFKRNVAVLAIAPTGSISNIADTSSGLEPNFLLA 515 Query: 790 YVK-SNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHA 846 YV+ N F VNE+ ++ L ++ + I D DG++ ++E I +++K++ Sbjct: 516 YVRYVNKQNSDEREPLFYVNEVLKQKLPEDLINSIKDKLVEDGTLKHLE-IDEEIKRVFV 574 Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875 + +I P+ + Q ++D ++++NL Sbjct: 575 VSHDIKPIDHLLMQEAFQCYVDNNISKTINL 605 >gi|197264971|ref|ZP_03165045.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243226|gb|EDY25846.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 705 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 195/677 (28%), Positives = 307/677 (45%), Gaps = 91/677 (13%) Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329 +Y+R F F +LG Y Y L +G R +E + VA+ LA Sbjct: 70 RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 129 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388 + E A + + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 130 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 186 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 187 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 246 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 247 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 303 Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK F +IA E Y E AD K + I+A ++ + + FE+G+P+I F+D Sbjct: 304 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFED 361 Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613 N +P G ++ SNLC+EI +NS+S CNLGS+N +AH Sbjct: 362 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 416 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D + T+ TA+R L V D+ + ++ N AIGLG M L I Sbjct: 417 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 474 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSI 726 Y SPEA++ + I++HA+ S+ LA+ERG ++ F S + G + D Sbjct: 475 AYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 534 Query: 727 GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + SI Sbjct: 535 PKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 594 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K +G F+ NE N++ D Sbjct: 595 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 628 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A++I P +I++ + + +DQ SL L+ D + + ++ AW G+K+ Y Sbjct: 629 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 683 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 684 YIRLRQ-LALEGTEIEG 699 >gi|229823056|ref|ZP_04449125.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271] gi|229787495|gb|EEP23609.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271] Length = 725 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 185/663 (27%), Positives = 307/663 (46%), Gaps = 90/663 (13%) Query: 287 YERDFAFE-YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y+ F F+ ++ Y +Y L N G+R + + R+A L L + ++E AV Sbjct: 91 YKMKFRFKSFMSAFKFYTQYALRTNDGAR--YLERYEDRIAFCALFLADGDQE-LAVRLR 147 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + S + +TPT N+G R +L SCFL V DD+ I + L++ GG+G Sbjct: 148 DEMISQRYQPATPTFLNAGRKRRGELVSCFLIQVSDDMNSIGRTINSALQLSRIGGGVGV 207 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I S GV+P +K+ D+ NQ G+R GA YL +H D+ F Sbjct: 208 NLSNLRAAGDPIKKIENASSGVVPVMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSF 267 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 L +K D++ R ++ +PD F + ++ LFSP D+ +YG+ F AY Sbjct: 268 LSTKKENADEKVRVKTLSLGVVVPDKFYELAAKDEPMYLFSP---YDVERIYGRPF--AY 322 Query: 523 ----ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y+ + EI+ KISA L ++ + E+G+P+I D N +P G Sbjct: 323 VDITEEYDNLVNNPEIRK-SKISARDLENEISKLQQESGYPYIVNIDTANRANPID--GT 379 Query: 579 VHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI +N+ E + CNLGS N+ N + AS++ Sbjct: 380 ITMSNLCSEILQVQRPSHINNRQEFEVLGTDISCNLGSTNI-----PNMIESPDFASSVE 434 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TAVR L V D N + K N IGLG MG + + + Y SPE+VE+ + Sbjct: 435 TAVRALTYVTDHSNIEAVPTVKHGNDLAHTIGLGGMGLHTLFAINQMEYGSPESVELTEA 494 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR- 743 ++++ + AS ++A+ERG ++ +F+ S + G + I +V E S+ Sbjct: 495 YFYALNYYTLVASNKIAKERGKSFDNFENSKYATGEYFDAYIQAPFQVTSEKVAAIMSKV 554 Query: 744 -LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 LP W LK+ V G+ + N +AIAPT +I+ + S S+ P + Sbjct: 555 ALPTADDWRALKEAVAASGLYHQNRLAIAPTGSISYVNETSASLHPITR----------- 603 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 L+ E +++ + Y+ + + E +P + +A++ D +I+ Sbjct: 604 -------LIEERQEKK-------TGKTYYPAPMLSNETLP-----YYKSAYDTDMRKVID 644 Query: 859 SASRRQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYY 902 + QK IDQ SL L++ + P G + L+ + AW G+K+ YY Sbjct: 645 VYAAAQKHIDQGMSLTLFMRSELPEGMYEWKEGRTNKMTTRDLNILRHYAWKKGIKSIYY 704 Query: 903 LRS 905 +R+ Sbjct: 705 VRT 707 >gi|260856786|ref|YP_003230677.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257755435|dbj|BAI26937.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|323154886|gb|EFZ41078.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli EPECa14] Length = 714 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYPNQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|301159372|emb|CBW18890.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131163|gb|ADX18593.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 714 Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + D A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLHDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|205360490|ref|ZP_02684058.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349046|gb|EDZ35677.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 714 Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 194/677 (28%), Positives = 307/677 (45%), Gaps = 91/677 (13%) Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329 +Y+R F F +LG Y Y L +G R +E + VA+ LA Sbjct: 79 RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 138 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388 + E A + + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 139 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 312 Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK F +IA E Y E AD K + I+A ++ + + FE+G+P+I F+D Sbjct: 313 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFED 370 Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613 N +P G ++ SNLC+EI +NS+S CNLGS+N +AH Sbjct: 371 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 425 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D + T+ TA+R L V D+ + ++ N AIGLG M L I Sbjct: 426 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 483 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG---- 727 Y SPEA++ + I++HA+ S+ LA+ERG ++ F S + G + + Sbjct: 484 AYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 543 Query: 728 -LLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + SI Sbjct: 544 PKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 603 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K +G F+ NE N++ D Sbjct: 604 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 637 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A++I P +I++ + + +DQ SL L+ D + + ++ AW G+K+ Y Sbjct: 638 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 692 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 693 YIRLRQ-LALEGTEIEG 708 >gi|300922751|ref|ZP_07138840.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|301327385|ref|ZP_07220634.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] gi|300420936|gb|EFK04247.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|300846039|gb|EFK73799.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] Length = 701 Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 190/680 (27%), Positives = 311/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 354 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 411 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 412 ----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 468 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 528 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 587 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695 >gi|326796345|ref|YP_004314165.1| ribonucleoside-diphosphate reductase, subunit alpha [Marinomonas mediterranea MMB-1] gi|326547109|gb|ADZ92329.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas mediterranea MMB-1] Length = 754 Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 179/678 (26%), Positives = 302/678 (44%), Gaps = 57/678 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G + + +++ ++ A GL++VS V + ++G+ +D+ LI Sbjct: 4 LTVTKRNGVTENIDLEKIHKVITWAAEGLENVSVSQVELKAQIQFFEGIRTTDIHETLIK 63 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ P+ LY E+ C +E+ Sbjct: 64 SAADLISENTPDYQYLAARLAIFHLRKKAFGQ-FEPPR---------LY-EHVCNLVEQN 112 Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A +L++ + +L + + + RD F Y ++ L +Y + + G E PQ Sbjct: 113 RYDAHILNDYSKE-ELDQINEFIDHSRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFI 171 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L EKE R FY+ +S F TP + SG R P Q SSC L Sbjct: 172 YILVAACL-FANYEKETRLDLIKRFYDAVSQFKLSLPTPIM--SGIRTPTRQFSSCVLIE 228 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 229 CGDSLDSINATSSAVVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAV 288 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R ++ L +R+ + Sbjct: 289 KSCSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIK 348 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKML 550 TLFSP +V L+D + ++F+ Y YE+ RK + A L+ Sbjct: 349 GGNITLFSPSDVPGLYDAFFADQEKFDRLYTMYEQDDS------IRKSTVKASELFTLFA 402 Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601 + TG ++ D CN SP V V SNLC EI L + E A+C Sbjct: 403 SERASTGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLENVSDPDGEIALCT 462 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + NL A + +L +R LD ++D + I A+ + R +G+G++ Sbjct: 463 LSAFNLGALENLD-----ELEELSELIIRALDALLDYQNYPIPAAQNATELRRTLGVGVI 517 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y+ A E+ ++ E I + + AS +L++E G +F + + +G+ Sbjct: 518 NYAYYLAKNGVRYSDGSANELTHKTFEAIQYFLLKASNKLSKEFGPCKAFNETTYSKGIL 577 Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PID+ ++E+ +S L W+ L+K + G+RNS A+ P+ T + I + Sbjct: 578 PIDT------YKEEVNKIVSSELYYDWESLRKDIVEYGLRNSTLSALMPSETSSQISNAT 631 Query: 780 QSIDPSYQNLYVKSNMSG 797 I+P + VK++ G Sbjct: 632 NGIEPPRGFVSVKASKDG 649 >gi|194451930|ref|YP_002046770.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359377|ref|ZP_02669536.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194410234|gb|ACF70453.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336552|gb|EDZ23316.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 714 Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGETFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|331648396|ref|ZP_08349484.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] gi|331042143|gb|EGI14285.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] Length = 714 Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 189/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P ++ SNL Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPIAE--RINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 562 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|238794432|ref|ZP_04638042.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] gi|238726227|gb|EEQ17771.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] Length = 693 Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 190/690 (27%), Positives = 310/690 (44%), Gaps = 79/690 (11%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 +EEG + + E DF + Y + F F +LG Y Y L +G R +E Sbjct: 46 VEEGYYEKEVLERY-DFSFIKGLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + VE + S F +TPT N G + +L SCFL Sbjct: 105 YEDRVCMVALTLAAGNPTLAQELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 281 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP +V ++ + E I+ E Y D I+ KI A ++ + + FE Sbjct: 282 NEEMYLFSPYDVEQVYGVPMSEISIS-EKYRAMVDDKRIRK-SKIKAREFFQILAEIQFE 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +NS +E + CNLG Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ AH D +I TA+R L V D+ N ++ +K N AIGLG M Sbjct: 398 SLNI-AH----TMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721 L I Y S EA++ + + +HA+ AS +LA ERG + F S + G + Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVVYHALRASNQLAIERGKHFKGFDESDYASGTY 512 Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 I + + + A+ + W L++ V G+ N N A+ PT +I+ Sbjct: 513 FTKYIEQRWQPKTAKVQALFAQAAIVLPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSIS 572 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P +V+ ++ R +G IG Sbjct: 573 YINHSTSSIHP---------------------IVSPIEIRK-------------EGKIGR 598 Query: 834 I----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + + +D + + A++I P +I++ + + +DQ SL L+ D S + ++ Sbjct: 599 VYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTASTRDINKA 658 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 659 QIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687 >gi|261247948|emb|CBG25781.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 714 Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + D A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|161615702|ref|YP_001589667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365066|gb|ABX68834.1| hypothetical protein SPAB_03487 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 714 Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|226226348|ref|YP_002760454.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas aurantiaca T-27] gi|226089539|dbj|BAH37984.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas aurantiaca T-27] Length = 859 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 167/590 (28%), Positives = 267/590 (45%), Gaps = 80/590 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-----------AVEFYNLLS 347 +L RY + +G +E P+ F RVA +A E ++R A EFY L++ Sbjct: 21 VLEKRYLVKDKSGKPVEKPEDMFWRVATTVA----EADRRYGASDGAVQAIAEEFYFLMT 76 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGGLGND 403 F ++PTL N+G QLS+CF+ V D L GI+ L+ A++ + GG G Sbjct: 77 QRRFEPNSPTLMNAGRPLGQLSACFVLPVDDALSNGQSGIYDTLRSMALIHQSGGGTGFS 136 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R G+ + T G + G + F+++ + + AV QGG R+GA L H DV EF+ Sbjct: 137 FSRLRSRGSMVRSTTGVASGPVSFMQLYDASTDAVKQGGTRRGANMGILRVDHPDVMEFI 196 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + +D + + N + I FM V +A + L P VS Sbjct: 197 ACK----EDLTKITNFNISVGITTKFMDAVKADANYDLVDP--VSK-------------- 236 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A +W KM+ + TG P + F D N +P H+G ++N Sbjct: 237 -----------KVTGELRAREVWDKMILGAWRTGEPGVFFIDEANRYNPVPHLGDYEATN 285 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C E L + VCNLGS+N+ + +N D++ + I + LDN+ID+N + + Sbjct: 286 PCGEQPLLAYD----VCNLGSVNVGHYVSNGVVDWEAMRRDIALSTHFLDNIIDVNKYPL 341 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + + R IGLG+MGF L L IPY S E VE+ + MEF+ S LA+ Sbjct: 342 PEIDALSKRIRRIGLGVMGFADMLVRLGIPYDSAEGVEMGRKVMEFLDVEGKKESERLAR 401 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSN 762 ERGA+ + S+W DE D +R++ + +RN N Sbjct: 402 ERGAFPEWAQSIWGP---------------DETCAR-------DANGQRIRPMQLLRNCN 439 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +APT TI+ I G S ++P + ++++ VN V K + + ++ Sbjct: 440 VTTVAPTGTISIIAGCSSGLEPLFAVAFMRNQAGVMMPDVNEDFVAIAKAEGWYSDELME 499 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + GS+ + E +P + + TA I P + I + Q D A S Sbjct: 500 RIA-KTGSVQHAE-VPAKWQSVFNTANNISPEYHIRMQAAYQLHCDSAIS 547 >gi|82545244|ref|YP_409191.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii Sb227] gi|81246655|gb|ABB67363.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella boydii Sb227] gi|332092048|gb|EGI97126.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii 3594-74] Length = 714 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N +SE CNLGS+N +AH D A T+ TAVR L Sbjct: 388 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442 Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D++ ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|330998672|ref|ZP_08322402.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella excrementihominis YIT 11859] gi|329576533|gb|EGG58041.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella excrementihominis YIT 11859] Length = 591 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 178/611 (29%), Positives = 274/611 (44%), Gaps = 96/611 (15%) Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ F VA A ++ Y+ S STP L ++ SCF + Sbjct: 33 PQERFATVAETFASNPAHAQR----IYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYM 88 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D G+ L E L+ GG+G + I + KS GV+P LK+ + + Sbjct: 89 QDTAEGLVNTLSEVNWLSMLGGGVG--------IHVDIRSADDKSVGVMPHLKIYDAACL 140 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 A QG R+G+ A+L+ H D+ +FL++RK TGD RT +++ I D FM+ + ++ Sbjct: 141 AYRQGRTRRGSYAAFLDVDHPDIIQFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS 200 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 D+ +L D + +V +SA +W+++L + +T Sbjct: 201 M--VNADADDSWELRDPHSH------------------RVVEVVSARDIWQRILELRMQT 240 Query: 557 GHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHF 611 G P+I F D N P G+ +H SNLCTEI L +S + TAVC L S+NL H+ Sbjct: 241 GEPYIVFIDAANRALPSWLSDKGLKIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDHW 300 Query: 612 -ANNQFDYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 N QF I + LDNV ID +++E+A+ S R+IG+G +GF + Sbjct: 301 NTNEQF--------IPDVMEFLDNVLQYFIDNAPNSVERARYSALRERSIGIGALGFHAY 352 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L IP S A I I L ++RG K D G Sbjct: 353 LQSKRIPIESVLAKSINYRMFSHIKEECARGDEILCEKRGPCPDAK----DAG------- 401 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785 I R S+ A+AP A+ + I G S SI+P Sbjct: 402 -----------------------------IPRRFSHWNAVAPNASSSLIMGATSPSIEPI 432 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N+Y + +SG + N L+ L++ L + + + + HDGS+ ++E +P ++ + Sbjct: 433 RANIYRQDTLSGAHIIKNKMLIPVLEEYGLNTDEVWTSITAHDGSVQHLEALPQVIRDVF 492 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYY 902 TA EID WLI+ A+ RQ++IDQ QSLNL+ P+ + +++ AW +GLK+ YY Sbjct: 493 KTAQEIDQRWLIDLAADRQEFIDQGQSLNLFF--PADVSIAYLHACHFLAWKVGLKSLYY 550 Query: 903 LRSRSATSVEK 913 RS +K Sbjct: 551 CRSDKLRKADK 561 >gi|238750474|ref|ZP_04611975.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] gi|238711405|gb|EEQ03622.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] Length = 693 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 191/696 (27%), Positives = 318/696 (45%), Gaps = 91/696 (13%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 +EEG + + + DF + Y + F F +LG Y Y L +G R +E Sbjct: 46 VEEGYYEKEVLDKY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + + VE + S F +TPT N G + +L SCFL Sbjct: 105 YEDRVCMVALTLAAGNPQIARDLVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 281 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP +V+ ++ L E I+ E Y D I+ KI A ++ + + FE Sbjct: 282 NEDMYLFSPYDVAQVYGLPLSEISIS-EKYRELVDDKRIRK-SKIKAREFFQVLAEIQFE 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +NS +E + CNLG Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ AH D +I TA+R L V D+ + ++ +K N AIGLG M Sbjct: 398 SMNI-AH----TMDSPDFGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMN 452 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L I Y S EA++ + + +HAI AS +LA ERG+Y FKG +D+ + Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTLVYHAIRASNQLAIERGSY--FKG--FDESDYA 508 Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767 S + ++ + +T+++ W L++ V G+ N N A+ Sbjct: 509 --SGRYFTKYTEQSWLPKTAKVQALFAKSGIHIPNQQDWATLRQSVMAHGIYNQNLQAVP 566 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ I + SI P +V+ ++ R Sbjct: 567 PTGSISYINHSTSSIHP---------------------IVSPIEIRK------------- 592 Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 +G IG + + +D + + A++I P +I++ + + +DQ SL L+ D + Sbjct: 593 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATT 652 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + ++ AW G+KT YY+R R ++E + ++G Sbjct: 653 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687 >gi|257125879|ref|YP_003163993.1| ribonucleoside-diphosphate reductase, subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049818|gb|ACV39002.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 699 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 181/690 (26%), Positives = 315/690 (45%), Gaps = 82/690 (11%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLK------YERDFAF-EYLGLQILYDRYFLH 308 F +EE ++ + ++ ++F +Y +++K Y++ F F ++ Y Y L Sbjct: 47 FFHNLEEKMRYLIKNDYYINFYEMYSHDEIKEVFKLVYDKKFRFASFMSASKFYQSYALM 106 Query: 309 INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365 + +E + V++ LA EK K E+ +L + + +TPT NSG R Sbjct: 107 DDTGEKFLERYEDRIATVSLYLAQGNVEKAK---EYALMLINQEYQPATPTFLNSGKKRS 163 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +L SCFL + D+L GI + L+ GG+ + + +R G I G G++ GV+ Sbjct: 164 GELVSCFLDEMGDNLSGIGYIFDSSMKLSSIGGGVSINLSKIRARGEAIKGVEGRASGVL 223 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D NQ G+R GA YL +H D+ EFLD +K D++ R ++ + Sbjct: 224 PIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDINEFLDSKKINVDEKIRIKSLSIGVIV 283 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 P+ FM+ ++ F+P V + Y E ++ E YE+ D +K +KI+A L Sbjct: 284 PNKFMQLAIEDEVCYTFNPHTVFLEYGQYLDEMDMN-EMYEKLVDNPNVKK-KKINAREL 341 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEETA 598 K+ E+G+P++ FKD N + +G V SNLCTEI +N+ EE Sbjct: 342 LVKISQTQKESGYPYLFFKDNANKEHALKEIGTVKFSNLCTEIMQLSEVSDINAYYEEDT 401 Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652 + CNLGS+N+ N ++ + A+ L V D+ N + KK+N Sbjct: 402 IRRGISCNLGSLNIATVMENK-----RIKEATKAAIDSLTMVSDLTNIDIVPSIKKANDE 456 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711 ++GLG M L I Y S EA++ + ++F+++ S+E+A+E+G + F Sbjct: 457 LHSVGLGAMNLHGYLAKNFIMYESKEALDFCNVFFMMVNFYSLERSMEIAKEKGETFKDF 516 Query: 712 KGSLWDQGVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 + S + G + + I L E + ++ W LK++V G+ N Sbjct: 517 EKSEYANGNYFDKYITKEYVPQTEKIKQLFE-----GICIPTKEDWANLKEQVMKHGVYN 571 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 + MAIAP + + I + S+ P +V+ ++ R+ D Sbjct: 572 AYRMAIAPNQSTSYIMNSTASVMP---------------------VVDTIEVREYGDSTT 610 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + Y + +D + +A++++ +++ S Q+ +DQ S LY Sbjct: 611 FYPMPY----------LTNDNYFFYKSAYDMNQKNILKLISVIQRHVDQGISTILYTKST 660 Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 S + L +Y A +GLK+ YY R+R AT Sbjct: 661 DSTRDLARLYIYAHRLGLKSLYYTRTRKAT 690 >gi|329121527|ref|ZP_08250151.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister micraerophilus DSM 19965] gi|327469442|gb|EGF14912.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister micraerophilus DSM 19965] Length = 730 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 185/707 (26%), Positives = 317/707 (44%), Gaps = 106/707 (14%) Query: 288 ERDFAFEYL-GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E DF F L G Y Y L + + + + F R M E A + + Sbjct: 87 EYDFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKKLVGDI 145 Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N+G R + SC+L + D++ I + + L+K GG+ T Sbjct: 146 LSNRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLT 205 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R A I G +S GV+P +K+ DT NQ G+R+GA YL H ++ +FLD Sbjct: 206 NLREGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDT 265 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA--- 521 ++ D++ R ++ IPD+ + + LFSP D++ +YGK +I+ Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDVYKVYGKPMTDISITK 322 Query: 522 -YENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 YEN R D+ RK I+A ++ + + FE+G+P+I ++D N R+P + G Sbjct: 323 EYENLLRN-DK-----VRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGR 376 Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI T ++ +E+ + CNLGSIN+ A D I Sbjct: 377 IVMSNLCSEIAQVSTASTYTEDMSYYHVGQDICCNLGSINI----AEAMKDGKNFGEMIG 432 Query: 627 TAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 AV LD V D+NC +I++ + NH AIGLG M L HI Y +PEAV+ Sbjct: 433 RAVEALDRVSRASDLNCAPSIKRGNEENH---AIGLGAMNLHGFLATHHIYYDTPEAVDF 489 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 D +++A AS +A ++GA++ F S + G + + +EL + +T Sbjct: 490 TDMFFYATAYYAFKASHYMAMKKGAFTGFADSEYADGSY-------FKKYTEELNVPKTE 542 Query: 743 RLP---------------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 ++ W L + +K G+ N++ +A+APT +I+ + + S+ P Sbjct: 543 KVKELFEKYNFYIPTQEDWKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVS 602 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + V+ V ++ +++ + KY++ Sbjct: 603 PVEVRKEGKLGRVYVPAYEIDD------------ENYKYYEKG----------------- 633 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A+E+ P +I+ A+ QK +DQA ++ L++ + + + L+ Y +A+ + YY+R R Sbjct: 634 AYEVGPDAIIDVAAAAQKHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVRIR 693 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + L+G + + + N +C EC+ C Sbjct: 694 ------QDVLEGSEKFEEDSIIKNENKEVR------NCDGSEECQTC 728 >gi|1710385|sp|P09853|RIR1_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase 136 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|330199|gb|AAA45806.1| ribonucleotide reductase large subunit [Human herpesvirus 2] Length = 1144 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 189/663 (28%), Positives = 300/663 (45%), Gaps = 84/663 (12%) Query: 297 GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341 GLQ + Y+ ++L G +E + R+A LA + T + Sbjct: 500 GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 559 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396 F++ L + STP + N GTR+ SSC+L TT L I G + +A+LA+ Sbjct: 560 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNV--SAILAR- 616 Query: 397 SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 +GG+G ND +P + ++P LKV + A N+ R C Sbjct: 617 NGGIGLCMQAFNDASP-------------GTASIMPALKVLDSLVAAHNKQSTRPTGACV 663 Query: 451 YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503 YLE WH DV L ++ G++ +R ++ +A W+PDLF KR+ +N W+LF Sbjct: 664 YLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFD 723 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D L D +G+EFE YE+ E GE + + A A+ R T TG P+I F Sbjct: 724 RDTSMSLADFHGEEFEKLYEHLEAMG-FGETIPIQDL-AYAIVRSAAT----TGSPFIMF 777 Query: 564 KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 KD N G + SNLCTEI SS + VCNLGS+NL + FD+ L Sbjct: 778 KDAVNRHYIYDTQGAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCVSRRTFDFGMLR 837 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++ V +++ +ID + + + R++G+G+ G +A + + S E ++ Sbjct: 838 DAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLESAEFRDL 897 Query: 683 ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E + A+ S L RGA +S FK S++ G F + N Sbjct: 898 NTHIAEVMLLAAMKTSNALCV-RGARPFSHFKRSMYRAGRFHWERFS-----------NA 945 Query: 741 TSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + R W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K G+ Sbjct: 946 SPRYEGEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGE 1005 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853 N+ L+ EL +R + ++ + + ++ + L H TAF+ D Sbjct: 1006 TLRPNTLLLKEL-ERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQ 1064 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907 LI+ + R ++D +QS+ LY+ E + L + A+ GLKT YY + R Sbjct: 1065 ELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRK 1124 Query: 908 ATS 910 AT+ Sbjct: 1125 ATN 1127 >gi|306812444|ref|ZP_07446642.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] gi|305854482|gb|EFM54920.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] Length = 714 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +Y K F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYSKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|300930528|ref|ZP_07145924.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] gi|300461584|gb|EFK25077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] Length = 701 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 184/656 (28%), Positives = 304/656 (46%), Gaps = 72/656 (10%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + +R Sbjct: 491 HALRISMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W +L+ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIR----------- 599 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 E K R ++ A + ++ ++ A+EI +I++ + Sbjct: 600 ----KEGKTRRVYYPAPF---------------MTNENLALYQDAYEIGAEKIIDTYAEA 640 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 641 TRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|330196|gb|AAA45805.1| ribonucleotide reductase 1 [Human herpesvirus 1] Length = 1137 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 184/658 (27%), Positives = 295/658 (44%), Gaps = 74/658 (11%) Query: 297 GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341 GLQ + Y+ ++L G +E + R+A LA + T + Sbjct: 493 GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396 F++ L + STP + N GTR+ SSC+L TT L I + +A+LA+ Sbjct: 553 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILARN 610 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G +G + N G V+P LKV + A N+ R C YLE Sbjct: 611 GG-----------IGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLE 659 Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDE 506 WH DV L ++ G++ +R ++ +A W+PDLF KR+ +N WTLF D Sbjct: 660 PWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDT 719 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D +G+EFE Y++ E +I + + A + R T TG P++ FKD Sbjct: 720 SMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMFKDA 773 Query: 567 CNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 N G + SNLCTEI +S + VCNLGS+NL + FD+ +L + Sbjct: 774 VNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAV 833 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 + V +++ +ID + + N R++G+G+ G +A L + S E ++ Sbjct: 834 QACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKH 893 Query: 686 SMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 E + A+ S L RGA ++ FK S++ G F + + R Sbjct: 894 IAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE---- 945 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K G+ N Sbjct: 946 --WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1003 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIE 858 + L+ EL +R + ++ + D ++ + L+ H TAF+ D LI+ Sbjct: 1004 TLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVPQALPCLEPTHPLRRFKTAFDYDQKLLID 1062 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910 + R ++D +QS+ LY+ E + L + A+ GLKT YY + R AT+ Sbjct: 1063 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120 >gi|207858076|ref|YP_002244727.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709879|emb|CAR34232.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 714 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|308814594|ref|YP_003934868.1| aerobic NDP reductase large subunit [Shigella phage SP18] gi|308206186|gb|ADO19585.1| aerobic NDP reductase large subunit [Shigella phage SP18] Length = 751 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 206/792 (26%), Positives = 336/792 (42%), Gaps = 82/792 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK-NMYDGLSESDLETALI 203 +++ G F+ +++ ++ +C G L ET K ++ DG++ D++T +I Sbjct: 1 MQVQKSSGVSQDFDGQKIIKVLSWSCEGTN--IDPYELYETIKPHLRDGMTTRDIQTVII 58 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S LI +EP+Y V A+ + LR++V +P+ C + E Sbjct: 59 KVSAGLISVEEPDYQYVAAKATMFALRKDVYGQF--EPRSFIDQISYC---------VNE 107 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G L S ++ YL + +K+ERDF Y G L ++Y + G E PQ Sbjct: 108 GKYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFA 167 Query: 321 FMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M + M L E T++ K FY+ +S+ TP + + T Q SSC + D Sbjct: 168 IMAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADS 227 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R G+ I K GVIPF K + + Sbjct: 228 LKSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCS 287 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA AY WH++VE L L+ N G + R M+ + +L M+R+ +N Sbjct: 288 QGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYI 347 Query: 500 TLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 TLFSP E +L+ Y + E YE ++ ++I A ++ +T T Sbjct: 348 TLFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK-KRIKAKDVFELFMTERSGTAR 406 Query: 559 PWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFA 612 + F D N +P + + SNLC EI + NS E +C L + F Sbjct: 407 VYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSA------FV 460 Query: 613 NNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + FD+ DK+ VR LDN++D + +++A K+ R +G+G+ + + L Sbjct: 461 LDSFDWQDQDKINELAEVQVRALDNLLDYQGYPVKEALKAKK-RRNLGVGVTNYAAWLAS 519 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 YA +A ++ E E + + I AS++LA+E+G + + W +G PID Sbjct: 520 NFASYA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPID---WY 574 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + D++A W +L++ + G+RNS A+ P + + + + I+P + Sbjct: 575 NKKIDQIAAPNYV-CDWAQLREDLVEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 633 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K + G F N + N + L+D A + GN K + T Sbjct: 634 SIKESKEGSF---NQVVPNIEHNKGLYDYAWVL------AKQGN---------KPYLTQV 675 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTT 900 I KWI Q+ S N Y D P GK D +Y W G K Sbjct: 676 AI-----------MLKWICQSASANTYYDPQNYPKGKVPMSVMLDDLMY--FWYFGGKNL 722 Query: 901 YYLRSRSATSVE 912 YY +R + + Sbjct: 723 YYHNTRDGSGTD 734 >gi|222034375|emb|CAP77116.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli LF82] Length = 701 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +Y K F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYSKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|168233768|ref|ZP_02658826.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470517|ref|ZP_03076501.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456881|gb|EDX45720.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332204|gb|EDZ18968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 705 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNIYFYTI 492 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 552 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699 >gi|330908706|gb|EGH37220.1| ribonucleotide reductase of class 1b (aerobic), alpha subunit [Escherichia coli AA86] Length = 714 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 191/676 (28%), Positives = 306/676 (45%), Gaps = 89/676 (13%) Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLA 329 +Y RDF +LG Y Y L +G R + F RV M L Sbjct: 79 RYSRDFVITLFAHAHASGFRFKTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALT 136 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388 L + + E A + + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 137 LAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ +NA LFSP Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---Y 312 Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I ++D Sbjct: 313 DVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDT 371 Query: 567 CNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANN 614 N +P ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 372 VNRANPIAE--RINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH---- 424 Query: 615 QFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D A T+ TAVR L V D+ + ++ + N AIGLG M L I Sbjct: 425 TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIA 484 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI------ 726 Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 485 YGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQP 544 Query: 727 --GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + SI P Sbjct: 545 KTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHP 604 Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + + K +G F+ NE + A+ D Sbjct: 605 IVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD-------------------- 637 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT YY Sbjct: 638 ----AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYY 693 Query: 903 LRSRSATSVEKSTLKG 918 +R R ++E + ++G Sbjct: 694 IRLRQ-MALEGTEIEG 708 >gi|203288576|ref|YP_002223483.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia duttonii Ly] gi|201084283|gb|ACH93871.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia duttonii Ly] Length = 707 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 160/588 (27%), Positives = 285/588 (48%), Gaps = 62/588 (10%) Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT N+G +L SCFL V D L I + L+K GG+ + + +R G Sbjct: 160 ATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRARGE 219 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G ++GVIP +K+ D +Q G+RKGA YL +H D+E+FLD +K D+ Sbjct: 220 EIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINADE 279 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + R ++ IPD F + Q+ + +P V L + + ++Y+ A Sbjct: 280 KSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFD-KDYDLLASNP 338 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---- 588 I + ++ISA + ++ + FE+G+P+I ++ CN+ P + VG V SNLCTEI Sbjct: 339 RI-IKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKMSNLCTEIFQIQ 397 Query: 589 ---TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 + + E + C LGS+N++ + N+ F++ T+ A+R L +V+D +C Sbjct: 398 TPSVIGNYGEGDVIGYDVSCILGSLNIV-NVINSDFEF-----TVDLAMRALTSVVDKSC 451 Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +K+N +RA+GLG+M L IPY S EA++ ++F+++ +S+ Sbjct: 452 INNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFMLLNFYSLKSSM 511 Query: 700 ELAQERGA-YSSFKGSLWDQG----VFPIDSIGLLAEVRDEL--AMNRTSRLPWDELKKR 752 +A+ER + + FK S + G ++ + +EV E+ + S+ W+ LK Sbjct: 512 NIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIPSKSDWNNLKGD 571 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 ++ G+ ++ +A+APT +I+ I + S+ P +V ++ Sbjct: 572 IQRYGLYHAYRLAVAPTQSISYIQNATTSLMP---------------------IVEPVEA 610 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R + + Y + + +A+ +D LI+ S Q+ +DQ S Sbjct: 611 RVYGNSTTYYPMPY----------LSRENAIFFKSAYYMDMRKLIDLVSEAQRHVDQGIS 660 Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 LY+ +E S ++L +Y A GLK+ YY R+++ SV++ L + Sbjct: 661 TLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 707 >gi|194445580|ref|YP_002042052.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404243|gb|ACF64465.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 714 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + D A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|9629420|ref|NP_044641.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] gi|132605|sp|P08543|RIR1_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=ICP6; AltName: Full=Ribonucleotide reductase 136 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|59539|emb|CAA32314.1| ribonucleotide reductase large subunit [Human herpesvirus 1] Length = 1137 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 186/661 (28%), Positives = 298/661 (45%), Gaps = 80/661 (12%) Query: 297 GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341 GLQ + Y+ ++L G +E + R+A LA + T + Sbjct: 493 GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396 F++ L + STP + N GTR+ SSC+L TT L I + +A+LA+ Sbjct: 553 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILAR- 609 Query: 397 SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 +GG+G ND P + V+P LKV + A N+ R C Sbjct: 610 NGGIGLCVQAFNDSGP-------------GTASVMPALKVLDSLVAAHNKESARPTGACV 656 Query: 451 YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503 YLE WH DV L ++ G++ +R ++ +A W+PDLF KR+ +N WTLF Sbjct: 657 YLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFD 716 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D L D +G+EFE Y++ E +I + + A + R T TG P++ F Sbjct: 717 RDTSMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMF 770 Query: 564 KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 KD N G + SNLCTEI +S + VCNLGS+NL + FD+ +L Sbjct: 771 KDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLR 830 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++ V +++ +ID + + N R++G+G+ G +A L + S E ++ Sbjct: 831 DAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDL 890 Query: 683 ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E + A+ S L RGA ++ FK S++ G F + + R Sbjct: 891 NKHIAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE- 945 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K G+ Sbjct: 946 -----WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETL 1000 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMW 855 N+ L+ EL +R + ++ + D ++ + L+ H TAF+ D Sbjct: 1001 RPNTLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKL 1059 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSAT 909 LI+ + R ++D +QS+ LY+ E + L + A+ GLKT YY + R AT Sbjct: 1060 LIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKAT 1119 Query: 910 S 910 + Sbjct: 1120 N 1120 >gi|37525252|ref|NP_928596.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784679|emb|CAE13579.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotide reductase R1 subunit) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 709 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 182/671 (27%), Positives = 304/671 (45%), Gaps = 72/671 (10%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALK 331 DF ++ Y + F F+ +LG Y Y L N +E + VA+ LA Sbjct: 76 DFTVIKKLFQQAYSKKFRFQTFLGAFKYYTSYTLKTFDNKRYLERYEDRVCMVALTLAQG 135 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + A + + S F +TPT N G + +L SCFL + D++ I ++ Sbjct: 136 D---QMLACRLVDEMISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNSA 192 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 193 LQLSKRGGGVAFLLSNLRETGAPIKMIQNQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 252 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ K N LFSP ++ + Sbjct: 253 YLHAHHPDILRFLDTKRENADEKIRIKTLSIGVVIPDITFKLAKHNEDMYLFSPYDIQRV 312 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E + E Y + +I+ KI+A + + + FE+G+P+I ++D N Sbjct: 313 YGVPMSEISMT-EKYAEMVNNQQIRK-SKINAREFFMALAELQFESGYPYIMYEDTVNNA 370 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS+SE + CNLGS+N +AH D Sbjct: 371 NPIK--GRINMSNLCSEILQVNSASEYEEDLSYHHIGKDISCNLGSMN-IAH----TMDS 423 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +I TAVR L V D+ + ++ +K N AIGLG M L I Y S Sbjct: 424 PDFTLSIETAVRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYLAREKIHYGSE 483 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGL-------- 728 E ++ + +++HA+ S ++A ER +Y FK S + G F + Sbjct: 484 EGIDFTNIYFYIVTYHALRTSNQIAIERNSYFKGFKDSRYANGEFFNKYTEITWQPQTKK 543 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 ++++ ++ + ++ W ELK + G+ N N AIAPT +I+ I + SI P Sbjct: 544 VSQLFEQAGIKIPNQQDWLELKASIMAHGIYNQNLQAIAPTGSISYINNSTSSIHPIVSR 603 Query: 789 LYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + + K +G F+ N N+E D Sbjct: 604 IEIRKDGKTGRVYYPAPFMTN-----------------------NNLEYYQD-------- 632 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A+EI P +I++ + + +DQ SL L+ D+ + + ++ AW +KT YY+R + Sbjct: 633 AYEIGPEKIIDTYAIATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKRIKTLYYIRLK 692 Query: 907 SATSVEKSTLK 917 T++E + ++ Sbjct: 693 Q-TALEGTEVQ 702 >gi|320186461|gb|EFW61189.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri CDC 796-83] Length = 714 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N +SE CNLGS+N +AH D A T+ TAVR L Sbjct: 388 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442 Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D++ ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|167992528|ref|ZP_02573626.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205329296|gb|EDZ16060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|312913830|dbj|BAJ37804.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 705 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 321 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 492 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699 >gi|222478370|gb|ACM62262.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] gi|225644|prf||1308225A ribonucleotide reductase Length = 1137 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 184/658 (27%), Positives = 295/658 (44%), Gaps = 74/658 (11%) Query: 297 GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341 GLQ + Y+ ++L G +E + R+A LA + T + Sbjct: 493 GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396 F++ L + STP + N GTR+ SSC+L TT L I + +A+LA+ Sbjct: 553 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILARN 610 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G +G + N G V+P LKV + A N+ R C YLE Sbjct: 611 GG-----------IGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLE 659 Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDE 506 WH DV L ++ G++ +R ++ +A W+PDLF KR+ +N WTLF D Sbjct: 660 PWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDT 719 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D +G+EFE Y++ E +I + + A + R T TG P++ FKD Sbjct: 720 SMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMFKDA 773 Query: 567 CNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 N G + SNLCTEI +S + VCNLGS+NL + FD+ +L + Sbjct: 774 VNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAV 833 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 + V +++ +ID + + N R++G+G+ G +A L + S E ++ Sbjct: 834 QACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKH 893 Query: 686 SMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 E + A+ S L RGA ++ FK S++ G F + + R Sbjct: 894 IAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE---- 945 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K G+ N Sbjct: 946 --WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1003 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIE 858 + L+ EL +R + ++ + D ++ + L+ H TAF+ D LI+ Sbjct: 1004 TLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLID 1062 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910 + R ++D +QS+ LY+ E + L + A+ GLKT YY + R AT+ Sbjct: 1063 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120 >gi|60202516|gb|AAX14644.1| ribonucleotide reductase large catalytic subunit mutant [Corynebacterium stationis] Length = 720 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 183/647 (28%), Positives = 289/647 (44%), Gaps = 68/647 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y F F+ +LG Y Y L R + + F RV+M A + Sbjct: 98 YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 156 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S F +TPT N+G + +L SCFL + D++ I A+ + L+K GG+ Sbjct: 157 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 216 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I +S G+IP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 217 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 276 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE 523 ++ D++ R ++ IPD+ +N LFSP D+ +YGK F +I+ Sbjct: 277 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVS 333 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 ++ + +KI+A ++ + + FE+G+P+I F+D N +P + G ++ SN Sbjct: 334 DHYAEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSN 392 Query: 584 LCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS S EE CNLGS+N+ D+ T+ A+R Sbjct: 393 LCSEILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDFPDFGGTVEAAIRG 447 Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D ++ + N AIGLG M L HI Y S E ++ + + Sbjct: 448 LTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAV 507 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRL 744 + A+ AS ++A+ERG +S FK S + GVF P + +V+ EL N T Sbjct: 508 LYAALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVK-ELFANSTIHT 566 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W +LK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 567 PSAEDWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 619 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 E I + Y + N D+L A+E+ +I++ Sbjct: 620 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEVGHEKIIDTY 656 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 657 AVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLR 703 >gi|331664232|ref|ZP_08365138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] gi|331058163|gb|EGI30144.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] Length = 714 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|56414766|ref|YP_151841.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363694|ref|YP_002143331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205360153|ref|ZP_02834878.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|56129023|gb|AAV78529.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095171|emb|CAR60720.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205340774|gb|EDZ27538.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 714 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|302391884|ref|YP_003827704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetohalobium arabaticum DSM 5501] gi|302203961|gb|ADL12639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetohalobium arabaticum DSM 5501] Length = 749 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 187/652 (28%), Positives = 294/652 (45%), Gaps = 103/652 (15%) Query: 299 QILYDRYFLHINGSR--IEMPQAFFMRVAMGLA---LKETEKEKRAVEFYNLLSSFHFMC 353 +L DRY L N R +E P+ F+RVA +A E ++E EFYNL++ F F+ Sbjct: 11 NLLEDRY-LKRNEKREIVETPEELFIRVAENIAAAEEDEEKQEYYEEEFYNLMTDFKFLP 69 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 ++PTL N+GT QL++CF+ V D + GIF A++ A++ K GG G ++ +R Sbjct: 70 NSPTLMNAGTELQQLAACFVLPVEDSMEGIFTAVRNAALIHKSGGGTGFAFSRLRPKDDV 129 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + T G S G + F+KV N V QGGKR+GA L H D+ +F+ + D Sbjct: 130 VKSTGGVSSGPLSFMKVFNSATNTVKQGGKRRGANMGMLRVDHPDILDFIHAKGELNDKN 189 Query: 474 RRTHD-----MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAY---E 523 + +D + P++ D+ S+ + G EF A E Sbjct: 190 QELYDEFKESLEDTYLAPEVI--DKKLKQYKQKLLDDQFSNFNLSVGVTDEFMEAVKNDE 247 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 NYE R +V ++ A ++ ++ ++ G P + F D N ++P ++G + ++N Sbjct: 248 NYELINPRTG-QVVGELDARKVFNLIVKYAWKNGEPGLVFLDEINHKNPVPNLGEIEATN 306 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C E L + CNLGSINL + D+++L TI AVR LDNVID+N + + Sbjct: 307 PCGEQPLLPNE----ACNLGSINLSKFVDDGTVDWEELKETIDLAVRFLDNVIDMNNYPL 362 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +K ++ R IGLG+MGF L L I Y S EAVE+A + M+FI+ HA S +LA+ Sbjct: 363 DKIEEQVMKARKIGLGVMGFHEMLIKLGIAYNSDEAVEMAKKVMKFINEHAHQYSQKLAE 422 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+GA+ + W+E K + RN+ Sbjct: 423 EKGAFPA-----------------------------------WEESKYKTPK---RNATL 444 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 IAPT +I+ + G S I+P + Y ++ G+ + + D EA Sbjct: 445 TTIAPTGSISFLAGTSGGIEPFFDFSYTHTDGDGNTSRF---------EYDFTSEAE--- 492 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 +++ T +I P W I+ + Q ++D A S + L + K Sbjct: 493 ------------------EEVLVTTMDIAPEWHIKIQAAFQNYVDNAVSKTINLPNTATK 534 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT-----SVEKSTLKGVDGKLNAVPVTD 930 + R+A+++ Y L + T S E LK D K TD Sbjct: 535 E---DIREAYILA----YELNCKGLTVYRDGSRESQVLKSSDDKKEETLRTD 579 >gi|221102330|ref|XP_002161443.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata] Length = 472 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 101/253 (39%), Positives = 159/253 (62%), Gaps = 6/253 (2%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSR---IEMPQAFFMRVAMGLALKETEKEK 337 L N ++Y+RD+ F+Y G++ L Y ++ ++ IE PQ MRVA+G+ ++ + Sbjct: 223 LQNSIRYDRDYLFDYFGIKTLERSYLYKLHFTKFKIIERPQHMIMRVAIGIHGEDIDS-- 280 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 +E Y+L+S +F +TPTLFN+GTR Q+SSCFL + D++ IF A+++ A +K++ Sbjct: 281 -VIETYDLISQKYFTHATPTLFNAGTRRAQMSSCFLQAIDDNIESIFEAVRDIAFTSKWA 339 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G + +R G+ I GTNG + GV+P + N A +NQGG+R G++ YLE H Sbjct: 340 GGIGVHMSALRCRGSLIRGTNGIASGVVPLCILLNKLAKYINQGGRRNGSIACYLEPHHA 399 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ +F DLRKNTG+D R D+ A W+P LFMKRV + W+L PD+ L+ ++ +E Sbjct: 400 DIFDFCDLRKNTGNDDDRARDLYLALWVPSLFMKRVRDDLTWSLMCPDQCPGLNKVHSEE 459 Query: 518 FEIAYENYERQAD 530 + YE YE + + Sbjct: 460 YVKLYEMYESEGN 472 >gi|168464073|ref|ZP_02697990.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|238909578|ref|ZP_04653415.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|195633333|gb|EDX51747.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 705 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 492 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 552 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699 >gi|114318827|gb|ABI63501.1| UL39 [Human herpesvirus 1] gi|290766138|gb|ADD60115.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] Length = 1137 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 184/658 (27%), Positives = 295/658 (44%), Gaps = 74/658 (11%) Query: 297 GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341 GLQ + Y+ ++L G +E + R+A LA + T + Sbjct: 493 GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396 F++ L + STP + N GTR+ SSC+L TT L I + +A+LA+ Sbjct: 553 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILARN 610 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G +G + N G V+P LKV + A N+ R C YLE Sbjct: 611 GG-----------IGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLE 659 Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDE 506 WH DV L ++ G++ +R ++ +A W+PDLF KR+ +N WTLF D Sbjct: 660 PWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDT 719 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D +G+EFE Y++ E +I + + A + R T TG P++ FKD Sbjct: 720 SMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMFKDA 773 Query: 567 CNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 N G + SNLCTEI +S + VCNLGS+NL + FD+ +L + Sbjct: 774 VNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAV 833 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 + V +++ +ID + + N R++G+G+ G +A L + S E ++ Sbjct: 834 QACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKH 893 Query: 686 SMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 E + A+ S L RGA ++ FK S++ G F + + R Sbjct: 894 IAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE---- 945 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K G+ N Sbjct: 946 --WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1003 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIE 858 + L+ EL +R + ++ + D ++ + L+ H TAF+ D LI+ Sbjct: 1004 TLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLID 1062 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910 + R ++D +QS+ LY+ E + L + A+ GLKT YY + R AT+ Sbjct: 1063 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120 >gi|312947210|gb|ADR28037.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O83:H1 str. NRG 857C] Length = 714 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +Y K F ++A E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYSKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D++ ++ + N AIGLG M L Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|48843724|ref|YP_025104.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus - isolate China] gi|44829131|gb|AAS47821.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus - isolate China] Length = 547 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 173/570 (30%), Positives = 248/570 (43%), Gaps = 92/570 (16%) Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ S+P L NS T P SCF+ V DDL I E L+ GG W +R Sbjct: 53 FVYSSPILSNSKTGLP--ISCFIMDVKDDLLHIIDHSVEMRWLSINGGGCAGYWGNIRA- 109 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 KS G +PF+ + +A QG RKG+ AYL+ H D+ EF+++R G Sbjct: 110 ------PCDKSCGPMPFMHTLDADVLAYKQGSTRKGSYAAYLDISHPDIAEFINMRTPVG 163 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D R+ +++ I D FMK V + W L P Sbjct: 164 DLNRKNLNLHHGVNISDNFMKAVENDLNWDLKDPCT------------------------ 199 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTE 587 G +K ISA+ LWR +L F TG P++ F D N + + + + SSNLC E Sbjct: 200 -GSVK--ETISAMELWRSLLETRFRTGEPYLNFIDEANRKLHPALKAKNLKIKSSNLCNE 256 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT----I 643 I L + TAVC L S+NL ++D K + + V +L+NV+D+ + Sbjct: 257 IHLPTDETRTAVCCLASLNL------EKYDDWKDSDVVECCVTMLNNVLDVFIEKAPPQL 310 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 KA S R+IGLG G+ L IP+ S A+ I A+ AS L + Sbjct: 311 SKAINSAKLERSIGLGTAGWAYYLMKHQIPFESFNAISCTKIIFGNIKTKALKASKSLCK 370 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 L E D +K G+RN++ Sbjct: 371 ------------------------LYGEPED------------------LKNYGVRNAHL 388 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +AIAP + + I S SI+P N YV +G +VN +L L R D Sbjct: 389 LAIAPNSNTSCILNTSPSIEPISGNAYVHKTRAGTHLIVNPYLKRVLIDRGKNDSETWDS 448 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 + DGS+ ++ + D K + TA+EID LIE A+ RQK+I Q QSLNL+ + + Sbjct: 449 IVNKDGSVQHLPFLTDREKLVFKTAYEIDQNVLIEQAALRQKYICQGQSLNLFFPPHTQR 508 Query: 884 K-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912 K L ++ AW +G K YYLR+ ++ S E Sbjct: 509 KILHKVHFDAWKLGCKGLYYLRTAASKSSE 538 >gi|321309598|ref|YP_004191927.1| ribonucleotide reductase of class Ib (aerobic) subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801442|emb|CBY92088.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit [Mycoplasma haemofelis str. Langford 1] Length = 700 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 189/652 (28%), Positives = 312/652 (47%), Gaps = 71/652 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340 DL +F F+ Y+ ++ YD Y L + + +E + A+ L ++ K+ Sbjct: 81 DLVKSYNFRFKSYMSIKKFYDSYALRTDDKKRFLERYDDRIIACALFLGRRDFNFAKKLA 140 Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + +++ + +TPT N+G R +L SCFL V D L I + L+K GG Sbjct: 141 K--SMIEQ-KYQPATPTFSNAGKKRSGELVSCFLLEVDDSLNSINYIISTAMQLSKIGGG 197 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + + +R GA I + GVIP +K+ + +Q G+R GA AYL +H D+ Sbjct: 198 VAINLSKLRARGAQIKHIEAAASGVIPVIKILENVFDYADQLGQRPGAGAAYLSIFHWDL 257 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFLD +K D++ R ++ +P+ F+ + A + LF P V + ++ + + Sbjct: 258 IEFLDCKKINADEKSRIQTLSLGLLVPNKFIDLCIEGADYYLFEPYTVFKKYGVHMSDMD 317 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 ++ + YE A +I + + ISA + + FE+G+P+I + D N ++P + +G + Sbjct: 318 MS-KWYEVLAHDPDI-LKKSISARDVLNNIAKTQFESGYPYIIYIDTANKKNPLKKLGQI 375 Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK-LASTIR 626 SNLCTEI T+ + + CNLGS+N+ N+ F+ +K L TI Sbjct: 376 KMSNLCTEIFQIQETSTIKDYGDLDDIRYDVSCNLGSLNI-----NSLFEGEKNLEETIE 430 Query: 627 TAVRVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 A+R L V DI+ +I A +K+N ++GLG M L + Y SPEAVE A Sbjct: 431 VAMRALSMVSDIS--SIANAPGVRKANSELHSVGLGAMNLAGFLAKNKLHYDSPEAVEFA 488 Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELA- 737 I+F +I AS +AQER + F+ S + GV+ + + ++V EL Sbjct: 489 SVLFAAINFFSIKASCLIAQERKKTFEGFEKSDYYSGVYFLKYLENDYLPKSDVVKELFK 548 Query: 738 -MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 M +R W EL K+VK G+ N+ +AIAPT TI+ + + SI P Sbjct: 549 DMKLPTREDWQELAKKVKECGLYNAYRLAIAPTQTISYLNNSTPSIAP------------ 596 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 +V+ L+ R L+ + L Y+ N D + +A+ +D + Sbjct: 597 ---------VVDVLETR-LYGNS----LTYYPMPFLN-----KDTWYYYKSAYLLDQKAI 637 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I+ S Q+ +DQ S LY+ + S + L Y AW GLK+ YY R+++ Sbjct: 638 IDMVSAIQEHVDQGISTVLYVTNNTSTRDLVRFYIYAWHKGLKSLYYTRTKN 689 >gi|332162771|ref|YP_004299348.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606877|emb|CBY28375.1| ribonucleotide reductase of class Ib (aerobic),alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667001|gb|ADZ43645.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 716 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 187/690 (27%), Positives = 311/690 (45%), Gaps = 79/690 (11%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 +EEG + + E DF + Y + F F +LG Y Y L +G R +E Sbjct: 69 VEEGYYEKEVLEKY-DFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA + + VE + + F +TPT N G + +L SCFL Sbjct: 128 YEDRVCMVALTLAAGNQQVARDLVE---EIITGRFQPATPTFLNCGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ T +R +GA I +S GVIP +K+ D Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP +V ++ + E ++ E Y D I KI A ++ + + FE Sbjct: 305 NEEMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDDKRIHK-SKIKAREFFQILAEIQFE 362 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +NS +E + CNLG Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 420 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ AH D +I TA+R L V D+ N ++ +K N AIGLG M Sbjct: 421 SLNI-AHI----MDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 475 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721 L I Y S EA++ + +++HAI AS +LA ERG + F S + G + Sbjct: 476 LHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGNHFKGFDESAYASGEY 535 Query: 722 PID--------SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 ++ + + ++ + W L++ V G+ N N A+ PT +I+ Sbjct: 536 FTKYTEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSIS 595 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P +V+ ++ R +G IG Sbjct: 596 YINHSTSSIHP---------------------IVSPIEIRK-------------EGKIGR 621 Query: 834 I----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + + +D + + A++I P +I++ + + +DQ SL L+ D + + ++ Sbjct: 622 VYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKA 681 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 682 QIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710 >gi|194737455|ref|YP_002115763.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301107|ref|ZP_02663780.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194712957|gb|ACF92178.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288514|gb|EDY27891.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 714 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|290766060|gb|ADD60038.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] Length = 1137 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 186/661 (28%), Positives = 298/661 (45%), Gaps = 80/661 (12%) Query: 297 GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341 GLQ + Y+ ++L G +E + R+A LA + T + Sbjct: 493 GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396 F++ L + STP + N GTR+ SSC+L TT L I + +A+LA+ Sbjct: 553 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILAR- 609 Query: 397 SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 +GG+G ND P + V+P LKV + A N+ R C Sbjct: 610 NGGIGLCVQAFNDSGP-------------GTASVMPALKVLDSLVAAHNKESARPTGACV 656 Query: 451 YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503 YLE WH DV L ++ G++ +R ++ +A W+PDLF KR+ +N WTLF Sbjct: 657 YLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFD 716 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D L D +G+EFE Y++ E +I + + A + R T TG P++ F Sbjct: 717 RDTSMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMF 770 Query: 564 KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 KD N G + SNLCTEI +S + VCNLGS+NL + FD+ +L Sbjct: 771 KDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLR 830 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++ V +++ +ID + + N R++G+G+ G +A L + S E ++ Sbjct: 831 DAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDL 890 Query: 683 ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E + A+ S L RGA ++ FK S++ G F + + R Sbjct: 891 NKHIAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE- 945 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K G+ Sbjct: 946 -----WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETL 1000 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMW 855 N+ L+ EL +R + ++ + D ++ + L+ H TAF+ D Sbjct: 1001 RPNTLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKL 1059 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSAT 909 LI+ + R ++D +QS+ LY+ E + L + A+ GLKT YY + R AT Sbjct: 1060 LIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKAT 1119 Query: 910 S 910 + Sbjct: 1120 N 1120 >gi|198245896|ref|YP_002216783.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940412|gb|ACH77745.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624541|gb|EGE30886.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 714 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 191/647 (29%), Positives = 297/647 (45%), Gaps = 77/647 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + D A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLR 697 >gi|282599258|ref|YP_003358570.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella phage phiSboM-AG3] gi|226973564|gb|ACO94317.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella phage phiSboM-AG3] Length = 759 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 201/804 (25%), Positives = 351/804 (43%), Gaps = 94/804 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ DG+ + F+ ++ +V+ AC GL VS V++ + D + ++ LI Sbjct: 2 INVIKRDGSSVPFDIEKPHEVVDRACDGLTGVSMSEVIAASKIQFTDNMRTDRIQDILIQ 61 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ +LI +PNY V AR LR+ V YK P H + + F + I++ Sbjct: 62 AAASLISVDKPNYQYVAARLKSYDLRKAVYGQ-YKPP-----HLL-----DIFVKNIKQR 110 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQ 318 V R + + L + + ++RD F + + L ++Y L + E PQ Sbjct: 111 VYDREFLDLYTTEEFNELNDVINHKRDKNFTWAAMGQLTEKYLLRDRSKKDSKIFYETPQ 170 Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373 +M +AM L +K+ R +FY S+ F TP + +G R P Q SSC L Sbjct: 171 VMYMGIAMAL-FSNWDKDSRLEMVKKFYEYASTGKFSLPTPIM--AGVRTPTRQFSSCVL 227 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I + G+G D +RG+G+ I G G+IPF+K Sbjct: 228 IKTGDTLDSINATAKTIVDYVSKRAGIGFDVGAIRGIGSPIRGGEMVHTGLIPFIKYLTG 287 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA AY+ WH ++ + L+ N G + R ++ I + +R+ Sbjct: 288 ALKSCSQGGIRGGAATAYIPLWHYQFDDVVVLKNNRGTEENRERRIDYGIQINRVMFERL 347 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKML 550 LF P + ++++ Y + F YEN + AD G ++ +K+ A +++ +L Sbjct: 348 VAKQPLYLFDPKDNREMYEAYFADVDKFRTLYENMIKAADAGLVRS-KKLQAEEVFQMLL 406 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602 +TG +I F D N SP ++ ++SSNLC EI L N + A+C L Sbjct: 407 DQRSDTGRIYIAFVDHMNEYSP-FNLDTIYSSNLCLEIALPTREFEQYNDENGRVALCTL 465 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S NL A D ++ V LD +++ + +A+K+ +R +G+G++ Sbjct: 466 ASFNLTAF-----EDPTEMEDVAFVLVSALDMLLEYQDYPAIQARKAVEDYRPLGVGIVN 520 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L Y SP +E+ D M + F+ + AS LA + GA +G++ G Sbjct: 521 VAHFLAKNFTGYGSPAGLEMLDAWMAHLHFYLVKASNRLAMKFGACK--RGTIHGMGQVT 578 Query: 723 ID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 D + +L + M D+LK +KT G+RN+ +A+APT + + + Sbjct: 579 ADLQPLPLDILPNGKKPEGMAYGLDW--DDLKDDLKTYGIRNATLLAVAPTESSSQVLNA 636 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + I+P + +K + G + V +P Sbjct: 637 TNGIEPPKGLVSIKGSKDGTYKQV----------------------------------VP 662 Query: 839 D--DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIY 889 D L ++ +++D + +++A+ Q+W+DQ+ S N + D P GK K+ Sbjct: 663 DVETLGPLYDLKWDLDCIEYLKTAAVIQRWVDQSISTNTWYDPEKYPDGKIPRAKMMQDI 722 Query: 890 RQAWLMGLKTTYYLRSRSATSVEK 913 ++ G KT YY ++ A E+ Sbjct: 723 LSFYMWGGKTLYYNTNKDAKEDEE 746 >gi|205353757|ref|YP_002227558.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273538|emb|CAR38524.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628865|gb|EGE35208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 714 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSHYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|74313246|ref|YP_311665.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei Ss046] gi|187730558|ref|YP_001881573.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii CDC 3083-94] gi|73856723|gb|AAZ89430.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Shigella sonnei Ss046] gi|187427550|gb|ACD06824.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii CDC 3083-94] gi|320173469|gb|EFW48668.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella dysenteriae CDC 74-1112] gi|323167151|gb|EFZ52869.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella sonnei 53G] Length = 714 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N +SE CNLGS+N +AH D A T+ TAVR L Sbjct: 388 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 +HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI +I++ + Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|284922617|emb|CBG35705.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli 042] Length = 714 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 191/680 (28%), Positives = 309/680 (45%), Gaps = 76/680 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F +IA + + E + I+A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TA+R L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAMRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWARLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + K +G F+ NE + A+ D Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+K Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689 Query: 899 TTYYLRSRSATSVEKSTLKG 918 T YY+R R ++E + ++G Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708 >gi|322614369|gb|EFY11300.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621566|gb|EFY18419.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624427|gb|EFY21260.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626625|gb|EFY23430.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633515|gb|EFY30257.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638442|gb|EFY35140.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639745|gb|EFY36429.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643791|gb|EFY40341.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649477|gb|EFY45911.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655933|gb|EFY52233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661328|gb|EFY57553.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662526|gb|EFY58734.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666900|gb|EFY63075.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671270|gb|EFY67393.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677723|gb|EFY73786.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681450|gb|EFY77480.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683849|gb|EFY79859.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193762|gb|EFZ78965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197450|gb|EFZ82587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203265|gb|EFZ88294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205211|gb|EFZ90186.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212776|gb|EFZ97587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218082|gb|EGA02794.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221655|gb|EGA06068.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323230845|gb|EGA14963.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234804|gb|EGA18890.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238843|gb|EGA22893.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241543|gb|EGA25574.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248310|gb|EGA32246.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252924|gb|EGA36758.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256954|gb|EGA40663.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260571|gb|EGA44182.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264371|gb|EGA47877.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269505|gb|EGA52958.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 705 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 492 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699 >gi|253990648|ref|YP_003042004.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782098|emb|CAQ85262.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotid reductase r1 subunit) [Photorhabdus asymbiotica] Length = 709 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 183/677 (27%), Positives = 305/677 (45%), Gaps = 82/677 (12%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALK 331 DF + Y + F F+ +LG Y Y L N +E + VA+ LA Sbjct: 76 DFAFIKKLFQQAYSKKFRFQTFLGAFKYYTSYSLKTFDNKRYLERYEDRVCMVALTLA-- 133 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + A + + S F +TPT N G + +L SCFL + D++ I ++ Sbjct: 134 -QGNQTLACRLVDEIISGRFQPATPTFLNCGRKQRGELVSCFLLRIEDNMESIGRSINSA 192 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GV+P +K+ D NQ G R+GA Sbjct: 193 LQLSKRGGGVACLLSNLREAGAPIKMIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 252 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP ++ + Sbjct: 253 YLNAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDIQRV 312 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E I E Y + I+ KI+A + + + FE+G+P+I ++D N Sbjct: 313 YGVPMSEISIT-EKYAEMVNNQHIRK-SKINAREFFLTLAEIQFESGYPYIMYEDTVNRV 370 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS+SE + CNLGS+N+ AH D Sbjct: 371 NPIK--GRINMSNLCSEILQVNSASEYADDLSYRYIGKDISCNLGSMNI-AH----TMDS 423 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A +I TA+R L V D+ + ++ +K N AIGLG M L I Y S Sbjct: 424 PNFALSIETAIRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYLARERIYYGSE 483 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF----------PIDSI 726 E ++ + +++HA+ S ++A ER Y FK S + G F P Sbjct: 484 EGIDFTNIYFYIVAYHALRTSNQIAIERNCYFKGFKDSRYASGEFFNKYTERSWQP--QT 541 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + ++ ++ + ++ W ELK V T G+ N N A+ PT +I+ I + SI P Sbjct: 542 QKVCQLFEQAGIVIPNQQDWLELKASVITHGIYNQNLQAVPPTGSISYINNSTSSIHP-- 599 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLK 842 +V+ ++ R DG +G + + +D Sbjct: 600 -------------------IVSRIEIRK-------------DGKLGRVYYPAPFMTNDNL 627 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + + A+EI P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT Y Sbjct: 628 EYYKDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKGIKTLY 687 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 688 YIRLRQ-IALEGTEVQG 703 >gi|300906828|ref|ZP_07124509.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|301306008|ref|ZP_07212088.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|300401429|gb|EFJ84967.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|300838719|gb|EFK66479.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|315254451|gb|EFU34419.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 85-1] Length = 701 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 63 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 119 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 298 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +N +SE CNLGS+N +A Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A++I +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 625 ---------AYKIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695 >gi|270265354|ref|ZP_06193615.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] gi|270040758|gb|EFA13861.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] Length = 693 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 189/691 (27%), Positives = 309/691 (44%), Gaps = 84/691 (12%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IE 315 Y E+ V A+ DF + Y + F FE +LG Y Y L +G R +E Sbjct: 50 YYEQAVLAQY------DFSCIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLE 103 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT 374 + VA+ LA +T + VE + S F +TPT N G + +L SCFL Sbjct: 104 RYEDRVCMVALTLAAGDTRLAQDLVE---EMISGRFQPATPTFLNCGKQQRGELVSCFLL 160 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I A+ L+K GG+ T +R +GA I +S GVIP +K+ D Sbjct: 161 RIEDNMESIGRAVNSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDA 220 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 221 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAK 280 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 N LFSP +V ++ + E ++ E Y D I+ R I+A ++ + + F Sbjct: 281 NNEEMYLFSPYDVEQVYGVPFSEISVS-EKYREMVDDKRIRKSR-INAREFFQVLAEIQF 338 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNL 602 E+G+P++ F+D N +P G ++ SNLC+EI +N +S + CNL Sbjct: 339 ESGYPYMMFEDTVNRENPI--AGRINMSNLCSEILQVNRASTYHDDLSYDRVGKDISCNL 396 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 GS+N+ D + TA+R L V D+ + ++ + N + AIGLG M Sbjct: 397 GSLNIA-----KTMDAPDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRSSHAIGLGQM 451 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 L I Y S E ++ + +++HAI AS LA ERG A+ F+ S + G Sbjct: 452 NLHGYLARERIFYGSEEGIDFTNIYFYTVAYHAIRASNRLAIERGSAFEGFEHSTYASGD 511 Query: 721 FPI-----DSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + + + VR A + R W L++ V G+ N N A+ PT +I Sbjct: 512 YFTKYTEREWLPRTERVRTLFADANIAIPGREEWLALRQSVMMHGLYNQNLQAVPPTGSI 571 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I + SI P +V+ ++ R +G IG Sbjct: 572 SYINNSTSSIHP---------------------IVSRIEIR-------------KEGKIG 597 Query: 833 NI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 + + +D + + A++I P +I++ + + +DQ SL L+ D + + ++ Sbjct: 598 RVYYPAPYMTNDNLEYYQDAYDIGPEKIIDTYAAAGQHVDQGLSLTLFFRDTATTRDINR 657 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 658 AQIYAWRQGIKTIYYIRLRQ-MALEGTEVQG 687 >gi|320087213|emb|CBY96979.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 705 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 492 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699 >gi|319407581|emb|CBI81231.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp. 1-1C] Length = 716 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 192/676 (28%), Positives = 300/676 (44%), Gaps = 74/676 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMP 317 IEE R L E + DF V Y F F +LG Y Y L +G R Sbjct: 69 IEEKYYERELFE-LYDFSFVKKLFKRAYAFRFRFPTFLGAFKYYTSYTLKTFDGKR--YL 125 Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + + RV + +AL + K E + + + F +TPT N+G + +L SCFL Sbjct: 126 ERYEDRVCL-VALYLAQGNKSLAEGLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ D Sbjct: 185 VEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKKIENQSSGVLPVMKMLEDVF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFS D+ + GK F +I+ E+Y D +I+ +KISA ++ + + Sbjct: 305 NEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSKIRK-KKISARVFFQTLAEIQ 360 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601 FE+G+P+I F+D N +P G + SNLCTEI S + E CN Sbjct: 361 FESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEASELETDLTYRAVGNDISCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + D T+ AVR L V D+ N + K N AIGLG Sbjct: 419 LGSMNIA-----KAMESDNFGRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y +PEA++ + +++HA+ AS +A+ER + F+ S + G Sbjct: 474 MNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERKEVFVGFEKSAYANG 533 Query: 720 VFPIDSIGLLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTAT 771 F I I + + EL +R +P W ELK+ V G+ N A+ PT + Sbjct: 534 HFFIKYIEKEWKPQFELVQELFTRNNIVIPNQKDWQELKQLVAQYGLYNRYLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 594 ISYINYATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 630 DNTNL------EFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLRSR 906 AW G+K+ YY+R R Sbjct: 684 YAWKKGIKSLYYVRLR 699 >gi|261225972|ref|ZP_05940253.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256770|ref|ZP_05949303.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. FRIK966] Length = 713 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 169/591 (28%), Positives = 275/591 (46%), Gaps = 68/591 (11%) Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT N G + +L SCFL + D++ I A+ L+K GG+ + +R GA Sbjct: 159 ATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGA 218 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ D+ Sbjct: 219 PIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADE 278 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADR 531 + R ++ IPD+ +NA LFSP D+ +YGK F ++A + + Sbjct: 279 KIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQHYDELVA 335 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TL 590 E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC+EI + Sbjct: 336 DERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNLCSEILQV 393 Query: 591 NSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 NS+SE CNLGS+N +AH D A T+ TAVR L V D+ Sbjct: 394 NSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLTAVSDMS 448 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ + N AIGLG M L I Y SPEA++ + I++HA+ S Sbjct: 449 HIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTS 508 Query: 699 VELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDEL 749 + LA+ERG ++ FK S + G + + G + E+ + +R W +L Sbjct: 509 MLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGITLPTREMWAQL 568 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVN 808 + V G+ N N A+ PT +I+ I + SI P + + K +G F+ N Sbjct: 569 RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN 628 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 E + A+ D A+EI +I++ + + +D Sbjct: 629 E-------NLALYQD------------------------AYEIGAEKIIDTYAEATRHVD 657 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 Q SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 658 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 707 >gi|200387421|ref|ZP_03214033.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604519|gb|EDZ03064.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 714 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNRT--- 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGIMLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|255535949|ref|YP_003096320.1| ribonucleotide-diphosphate reductase subunit alpha [Flavobacteriaceae bacterium 3519-10] gi|255342145|gb|ACU08258.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Flavobacteriaceae bacterium 3519-10] Length = 551 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 176/597 (29%), Positives = 271/597 (45%), Gaps = 116/597 (19%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A K K + F +++ S+P N GT+ SCF VPD + GI L Sbjct: 40 AAKRLYKPELQPAFEEMITKGWISFSSPVWANMGTQRGLPISCFNVHVPDHIEGITHKLG 99 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 E M K GG + +R G + NGKS G + F+K+ + V+QGG R+GA Sbjct: 100 EVIMQTKIGGGTSGYFGELRNRGTAVT-DNGKSSGAVSFMKLYDTAMDVVSQGGVRRGAF 158 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 AYL+ H D+EEFL ++ D ++ T +PD +M+ Sbjct: 159 AAYLDIDHGDIEEFLSIK----DIGSPIQNLFTGICVPDYWMQ----------------- 197 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 D+ D G++ RKI W ++L + G P+I F D N Sbjct: 198 DMID-------------------GDMDK-RKI-----WARVLESRQQKGLPYILFSDNVN 232 Query: 569 IRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 PQ + +G+ +++SNLC+EI L S++EE+ +C L S+NL +D K + + Sbjct: 233 RNKPQVYKDLGMTINASNLCSEIMLPSNAEESFICCLSSMNL------ELYDEWKDTNAV 286 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYAS 676 + A+ LD V+ IEK + + + HRA+GLG++G+ S L IP+ S Sbjct: 287 KLAIYFLDAVLS---EFIEKTEGNYYLTGARNFALRHRALGLGVLGYHSYLQKNMIPFES 343 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + I +++AS ELA G KG Sbjct: 344 FEATQFNARAFRQIKEQSLAASQELANIYGEPELLKG----------------------- 380 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795 GMRN+ MAIAPT + + I G S I+P N Y Sbjct: 381 -------------------YGMRNTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLA 421 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G+F N +L L+++ L +E + + GS+ ++ + ++ K + T EI PM Sbjct: 422 KGNFMRKNKYLAKLLQEKGLDNEETWRTIMLNHGSVQHLNELTEEEKAVFKTFREISPME 481 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +I A++RQ++IDQAQSLNL + PS K ++++Y +AW G+KT YY RS S + Sbjct: 482 IISQAAQRQQYIDQAQSLNLQI--PSTMPVKDVNYLYIEAWKKGVKTLYYQRSSSVS 536 >gi|227515315|ref|ZP_03945364.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227086329|gb|EEI21641.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|299783627|gb|ADJ41625.1| Ribonucleoside-diphosphate reductase [Lactobacillus fermentum CECT 5716] Length = 721 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 185/661 (27%), Positives = 301/661 (45%), Gaps = 94/661 (14%) Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F F+ ++G Y +Y + N + + VA L L +++ A + + L + Sbjct: 91 FRFKSFMGAYKFYAQYAMKTNDGKRFLEDYNDRVVANALYLARGDQQ-LAKDLTDELINQ 149 Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G R Q+ SCFL V D + I AL L++ GG+G + + +R Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I S GV+P +K+ D NQ G+R GA YL +H D+ FL+ +K Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522 D++ R ++ +PD + + + NA LFSP +V +E + + Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVE-------RELKTPFSYVDLT 322 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + Y+R IK ISA L +K+ + E+G+P+I D N +P G + S Sbjct: 323 KEYDRLVANPRIKK-TAISARELEQKISRLQQESGYPYILNIDHANRDNPV--AGKIIMS 379 Query: 583 NLCTEI-------TLNSS-SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI TL S S ET CNLGS N+ +N + AVR Sbjct: 380 NLCSEILQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVR 434 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L NV D N + K N + IGLG MG +AL I Y SPEA+E + Sbjct: 435 ALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLA 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS----RL 744 ++++++ AS ++A+ERG ++ FK S + G + D + ++ E NR + L Sbjct: 495 LNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDDYVTKPFTLKFE--KNRAAFSGVHL 552 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W LK+ V+T G+ + N +A+AP +I+ + S S+ P Sbjct: 553 PTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTP---------------- 596 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + ++QR E + L Y + N E +P + A+++D +I++ Sbjct: 597 -----ITQLVEQRQ---ENKVGALFYPAPYLSN-ETLP-----YYTPAYDLDQRKIIDTY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKTTYYLR 904 + QK +DQ SL L++ D+P + + L+ + AW G+K+ YY+R Sbjct: 643 AVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIR 702 Query: 905 S 905 + Sbjct: 703 T 703 >gi|209920119|ref|YP_002294203.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SE11] gi|293448993|ref|ZP_06663414.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|331678653|ref|ZP_08379327.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] gi|209913378|dbj|BAG78452.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia coli SE11] gi|291322083|gb|EFE61512.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|324120034|gb|EGC13911.1| ribonucleotide reductase [Escherichia coli E1167] gi|331073483|gb|EGI44804.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] Length = 714 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 190/659 (28%), Positives = 306/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGL 442 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 502 Query: 692 FHAISASVELAQERG-AYSSFKGSLWD---------QGVFPIDSIGLLAEVRDELAMNRT 741 +HA+ S+ LA+ERG ++ FK S + QG + + + E+ + Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTK-VGELFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE + A+ D A+EI +I++ Sbjct: 622 YPAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708 >gi|184156150|ref|YP_001844490.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus fermentum IFO 3956] gi|183227494|dbj|BAG28010.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus fermentum IFO 3956] Length = 721 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 185/661 (27%), Positives = 301/661 (45%), Gaps = 94/661 (14%) Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F F+ ++G Y +Y + N + + VA L L +++ A + + L + Sbjct: 91 FRFKSFMGAYKFYAQYAMKTNDGKRFLEDYNDRVVANALYLARGDQQ-LAKDLTDELINQ 149 Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G R Q+ SCFL V D + I AL L++ GG+G + + +R Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I S GV+P +K+ D NQ G+R GA YL +H D+ FL+ +K Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522 D++ R ++ +PD + + + NA LFSP +V +E + + Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVE-------RELKTPFSYVDLT 322 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + Y+R IK ISA L +K+ + E+G+P+I D N +P G + S Sbjct: 323 KEYDRLVANPRIKK-TAISARELEQKISRLQQESGYPYILNIDHANRDNPV--AGKIIMS 379 Query: 583 NLCTEI-------TLNSS-SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI TL S S ET CNLGS N+ +N + AVR Sbjct: 380 NLCSEILQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVR 434 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L NV D N + K N + IGLG MG +AL I Y SPEA+E + Sbjct: 435 ALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLA 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS----RL 744 ++++++ AS ++A+ERG ++ FK S + G + D + ++ E NR + L Sbjct: 495 LNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDDYVTKPFTLKFE--KNRAAFSGVHL 552 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W LK+ V+T G+ + N +A+AP +I+ + S S+ P Sbjct: 553 PTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTP---------------- 596 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + ++QR E + L Y + N E +P + A+++D +I++ Sbjct: 597 -----ITQLVEQRQ---ENKVGALFYPAPYLSN-ETLP-----YYTPAYDLDQRKIIDTY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKTTYYLR 904 + QK +DQ SL L++ D+P + + L+ + AW G+K+ YY+R Sbjct: 643 AVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIR 702 Query: 905 S 905 + Sbjct: 703 T 703 >gi|320198427|gb|EFW73029.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli EC4100B] gi|323183201|gb|EFZ68598.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1357] Length = 714 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 194/682 (28%), Positives = 315/682 (46%), Gaps = 80/682 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YGK F +IA E+Y+ I+ + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------Q 718 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + Q Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQ 539 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + + + E+ + +R W +L+ V G+ N N A+ PT +I+ I Sbjct: 540 GNWQPKTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598 Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + + K +G F+ NE + A+ D Sbjct: 599 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD-------------- 637 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 A+EI +I++ + + +DQ SL L+ D + + ++ AW G Sbjct: 638 ----------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687 Query: 897 LKTTYYLRSRSATSVEKSTLKG 918 +KT YY+R R ++E + ++G Sbjct: 688 IKTLYYIRLRQ-MALEGTEIEG 708 >gi|324020304|gb|EGB89523.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 117-3] Length = 701 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 190/659 (28%), Positives = 306/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGL 429 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489 Query: 692 FHAISASVELAQERG-AYSSFKGSLWD---------QGVFPIDSIGLLAEVRDELAMNRT 741 +HA+ S+ LA+ERG ++ FK S + QG + + + E+ + Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTK-VGELFARSGITLP 548 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 549 TREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVY 608 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE + A+ D A+EI +I++ Sbjct: 609 YPAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTY 637 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 638 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|146312796|ref|YP_001177870.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter sp. 638] gi|145319672|gb|ABP61819.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Enterobacter sp. 638] Length = 705 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 191/659 (28%), Positives = 304/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R ++F RV M L L + + E A + + + Sbjct: 88 FRFQTFLGAWKYYTSYTLKTFDGKR--YLESFEDRVCMVALTLAQGD-ENLAEQLMDEML 144 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SARFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYE 523 + D++ R ++ IPD+ + +NA LFSP D+ +YGK F I+ Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFQLAKENAEMALFSP---YDIERIYGKPFGDVTISEL 321 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 E AD K F I+A ++ + + FE+G+P+I ++D N +P G ++ SN Sbjct: 322 YDELVADDRVRKKF--INARDFFQTLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S + CNLGS+N +AH D T+ TA+R Sbjct: 378 LCSEILQVNSASTYDENLDYAHTGKDISCNLGSLN-IAH----TMDSPDFGRTVETAIRG 432 Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D++ ++ + N AIGLG M L I Y SPE ++ + I Sbjct: 433 LTAVSDMSHIRSVPSIETGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTI 492 Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP 745 ++HA++ S+ LA+ER ++ F+ S + G + + + + E +R LP Sbjct: 493 TWHALNTSMMLARERNQRFAGFEKSRYASGEYFNQYLENSWQPKTEKVRALFARAGVTLP 552 Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 W +L+ V T G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWQQLRDDVMTFGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE + A+ D A+EI P +I++ Sbjct: 613 YPAPFMTNE-------NLALYQD------------------------AYEIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + K +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 642 AEATKHVDQGLSLTLFFPDTATTRDINKAQIHAWKKGIKTLYYIRLRQ-LALEGTEIEG 699 >gi|262043917|ref|ZP_06017005.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038771|gb|EEW39954.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 701 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 178/621 (28%), Positives = 285/621 (45%), Gaps = 71/621 (11%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA + ++ ++ E +LS F +TPT N+G + +L SCFL + D++ Sbjct: 120 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 176 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ + +R GA I +S GV+P +K+ D NQ G Sbjct: 177 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 236 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA +L H D+ FLD R+ D++ R ++ IPD+ + ++A LF Sbjct: 237 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 296 Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 SP D+ LYGK F + A + Q E R I A L++++ + FE+G+P+I Sbjct: 297 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609 F+D N SP G V SNLC+EI S+ E CNLGS+N +A Sbjct: 354 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D TI TAVR L V D+ + ++ N AIGLG M L Sbjct: 411 H----TMDSPDFGRTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727 I Y SPE ++ + +++HA+ S++LA+ERG ++ F+ S + G + + Sbjct: 467 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAYFDKYLQ 526 Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + E +R LP W +L+ V G+ N A+ PT +I+ I + Sbjct: 527 EEWQPKTERVRTLFARAGISLPDRERWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 586 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ N Sbjct: 587 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 616 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D+L ++ A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 617 DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 675 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 676 KTLYYIRLRQ-LALEGTEIEG 695 >gi|238784827|ref|ZP_04628828.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] gi|238714243|gb|EEQ06254.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] Length = 693 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 187/679 (27%), Positives = 303/679 (44%), Gaps = 86/679 (12%) Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + Y + F F +LG Y Y L +G R +E + VA+ LA Sbjct: 60 DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + VE + S F +TPT N G + +L SCFL + D++ I ++ Sbjct: 120 NPQLARELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + + LFSP +V + Sbjct: 237 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNSEDMYLFSPYDVEQV 296 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E I+ E Y D I+ KI A ++ + + FE+G+P++ F+D N Sbjct: 297 YGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFESGYPYMMFEDTVNRA 354 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS +E + CNLGS+N+ AH D Sbjct: 355 NPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNI-AH----TMDS 407 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +I TA+R L V D+ N ++ +K N AIGLG M L I Y S Sbjct: 408 PDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467 Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG--------- 727 EA++ + + +HAI AS LA ERG + F S + G + I Sbjct: 468 EALDFTNIYFYTVVYHAIRASNLLAIERGCHFKGFDESAYASGSYFTKYIAQRWQPKTAK 527 Query: 728 ---LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L A+V + + W L++ V G+ N N A+ PT +I+ I + SI P Sbjct: 528 VEALFADV----GITIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP 583 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDD 840 +V+ ++ R +G IG + + +D Sbjct: 584 ---------------------IVSPIEIRK-------------EGKIGRVYYPAPYMTND 609 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 + + A++I P +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 610 NLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKRGIKT 669 Query: 900 TYYLRSRSATSVEKSTLKG 918 YY+R R ++E + ++G Sbjct: 670 IYYIRLRQ-MALEGTEVEG 687 >gi|207744361|ref|YP_002260753.1| ribonucleotide reductase large subunit;; protein [Ralstonia solanacearum IPO1609] gi|206595766|emb|CAQ62693.1| ribonucleotide reductase large subunit;; protein [Ralstonia solanacearum IPO1609] Length = 222 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 99/150 (66%), Positives = 121/150 (80%), Gaps = 2/150 (1%) Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I+R Sbjct: 18 GVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARIDR 77 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 IP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGK LD Y+ AWL G Sbjct: 78 IPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRG 137 Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 LKTTYYLR+ AT VEKST+ G LNAV Sbjct: 138 LKTTYYLRTIGATHVEKSTVS--RGTLNAV 165 >gi|330013347|ref|ZP_08307618.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] gi|328533535|gb|EGF60258.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] Length = 701 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 180/623 (28%), Positives = 285/623 (45%), Gaps = 75/623 (12%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA + ++ ++ E +LS F +TPT N+G + +L SCFL + D++ Sbjct: 120 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 176 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ + +R GA I +S GV+P +K+ D NQ G Sbjct: 177 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 236 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA +L H D+ FLD R+ D++ R ++ IPD+ + ++A LF Sbjct: 237 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 296 Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 SP D+ LYGK F + A + Q E R I A L++++ + FE+G+P+I Sbjct: 297 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 353 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609 F+D N SP G V SNLC+EI S+ E CNLGS+N +A Sbjct: 354 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 410 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D TI TAVR L V D+ + ++ N AIGLG M L Sbjct: 411 H----TMDSPDFGRTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 466 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727 I Y SPE ++ + +++HA+ S++LA+ERG ++ F+ S + G + D Sbjct: 467 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAY-FDKY- 524 Query: 728 LLAEVRDELAMNRT----------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 L E + + RT R W +L+ V G+ N A+ PT +I+ I Sbjct: 525 LQEEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINH 584 Query: 778 VSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 + SI P + + K +G F+ N Sbjct: 585 ATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN---------------------------- 616 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 D+L ++ A+EI P +I++ + + +DQ SL L+ D + + ++ AW Sbjct: 617 --DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKK 673 Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918 G+KT YY+R R ++E + ++G Sbjct: 674 GIKTLYYIRLRQ-LALEGTEIEG 695 >gi|323946353|gb|EGB42382.1| ribonucleotide reductase [Escherichia coli H120] Length = 701 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 190/659 (28%), Positives = 306/659 (46%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ +NA LFSP D+ +YGK F +IA E+ Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + ++A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGL 429 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPEA++ + I+ Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489 Query: 692 FHAISASVELAQERG-AYSSFKGSLWD---------QGVFPIDSIGLLAEVRDELAMNRT 741 +HA+ S+ LA+ERG ++ FK S + QG + + + E+ + Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTK-VGELFARSGITLP 548 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 549 TREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVY 608 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE + A+ D A+EI +I++ Sbjct: 609 YPAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTY 637 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 638 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695 >gi|172041161|ref|YP_001800875.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium urealyticum DSM 7109] gi|171852465|emb|CAQ05441.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium urealyticum DSM 7109] Length = 719 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 192/673 (28%), Positives = 308/673 (45%), Gaps = 81/673 (12%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + Y + F F+ +LG Y Y L +G R +E + VA+GLA Sbjct: 86 DFPFIKALFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGKRYLERFEDRVCMVALGLADG 145 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 + E K V+ +L F +TPT N G + + SCFL + D++ I ++ Sbjct: 146 DEEMAKSLVD--EILDG-RFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSA 202 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S G+IP +K+ D NQ G R+GA Sbjct: 203 LQLSKRGGGVALLLSNIREAGAPIKHIENQSSGIIPVMKLLEDAFSYANQLGARQGAGAV 262 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP D+ Sbjct: 263 YLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDVTFELARKNADMYLFSP---YDV 319 Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YGK F +I+ E+Y+ + I+ +KI+A ++ + + FE+G+P+I ++D N Sbjct: 320 ERVYGKPFADISVTEHYDEMVEDPRIRK-KKINARDFFQTLAEIQFESGYPYIMYEDTVN 378 Query: 569 IRSPQQHVGVVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQF 616 +P G + SNLC+EI T ++ +E+ CNLGS+N+ A + Sbjct: 379 RANPI--AGRITHSNLCSEILQVSTPSAFNEDLTYETIGDDISCNLGSMNIA--MAMDSA 434 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+ K TI A+R L V D + ++ ++ N AIGLG M L HI Y Sbjct: 435 DFSK---TIEIAIRALTAVSDQTDIDSVPSIRQGNDHSHAIGLGQMNLHGYLGREHIHYG 491 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLL 729 S EA++ + + + + AS ++A ERG A+ F+ S + G F P + Sbjct: 492 SEEALDFTNAYFAAVMYECLKASNKIAIERGTAFHDFENSEYASGAFFDRYDPAEFAPKT 551 Query: 730 AEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +V++ A + + +P W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 552 EKVKEIFAAS-SIEVPTTEDWAELKASVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPI 610 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + K G + NE N+E D Sbjct: 611 ASKIEIRKEGKIGRVYYAAPHMNNE-----------------------NLEYFED----- 642 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 A+E+ +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 643 ---AYEVGFEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYV 699 Query: 904 RSR----SATSVE 912 R R S T VE Sbjct: 700 RLRQTALSGTEVE 712 >gi|161529135|ref|YP_001582961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nitrosopumilus maritimus SCM1] gi|160340436|gb|ABX13523.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nitrosopumilus maritimus SCM1] Length = 884 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 152/582 (26%), Positives = 276/582 (47%), Gaps = 57/582 (9%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 + E+++L+ S F+ ++PT+ N+G R QLS+CF+ + D + I + + A++ K Sbjct: 249 KITEYFDLMVSQDFLPNSPTMMNAGGRLGQLSACFVLGMQDGMEEIMKSTSDAALIFKSG 308 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA +E WH Sbjct: 309 GGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIIEAWHP 368 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV-TQNAGWTLFSPDEVSDLHDLYGK 516 DVE+F+ + G +++ W D + V T + + L SP + + Sbjct: 369 DVEKFITNKTEPG--VLENFNVSVGVW-EDFWHALVNTSDGNYVLRSPRDKKPVK----- 420 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVAL--WRKMLTMLFETGHPWITFKDPCNIRS--P 572 EI + I +AL W+ + P + F D N + Sbjct: 421 ----------------EINAHQLIDLIALSAWK--------SAEPGLIFFDQINKYNVFA 456 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRT 627 + + ++N C E +L CNLGSINL+ +FD+ + TIR Sbjct: 457 KARQAPLRATNPCGEQSLYPYES----CNLGSINLVNLVKRQADGTYEFDWQRYEETIRK 512 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY S E E+ + Sbjct: 513 TTRFLDNIIDVNHYPVPEINVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYELQSKLS 572 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E ++++++ SV LA+ RG + + + +G P+ G + ++ + WD Sbjct: 573 EALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPV--AGYYEKPKE------SHSYEWD 624 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L +++K G+RN +APT T++ I S ++P++ ++ K G F N + Sbjct: 625 ALVEKIKQYGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVTVGRFFYTNKIVE 684 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 LK+ +L+++ +++ + + GS+ I+ IP ++ + TA +I + + Q WI Sbjct: 685 QVLKENNLYNDEILAKIADNYGSLKGIDEIPQWMQDVFVTAMDIHWSDHLMAQGVWQDWI 744 Query: 868 DQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 A+++N+ D + + + Y A +GLK R S Sbjct: 745 GNAIAKTINMPYD-VTAEDVKSAYLLAHEIGLKGITVYRDGS 785 Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 8/101 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNK 88 ++ KR+G VT+F+ KIS AI KA A + ++ D ++ L EQ T Sbjct: 12 EIRKRSGAVTAFNKDKISNAIYKALAATSKADRGLADQLADNVVNKLVEQGFT------- 64 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 S +EDIQD VE +L+ SG+ I + Y++YR ER +R Sbjct: 65 STRSPTVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLR 105 >gi|119960800|ref|YP_948076.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter aurescens TC1] gi|119947659|gb|ABM06570.1| Ribonucleoside-diphosphate reductase alpha chain [Arthrobacter aurescens TC1] Length = 727 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 189/660 (28%), Positives = 295/660 (44%), Gaps = 74/660 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y++ F FE +LG Y Y L +G R +E + VA+ LA + + R V+ Sbjct: 108 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGDEDLANRLVD-- 165 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + F +TPT N+G + +L SCFL + D++ I A+ L+K GG+ Sbjct: 166 -EIIDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARAINSALQLSKRGGGVAL 224 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 225 SLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIHRF 284 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ +PD+ + +N LFSP D+ +YG F Sbjct: 285 LDTKRENADEKIRIKTLSLGVVVPDITFELAKKNEDMYLFSP---YDVEKVYGVPFSDIS 341 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D IK KISA ++ + + FE+G+P+I F+D N +P G + Sbjct: 342 VTEKYYEMVDDSRIKK-TKISAREFFQTLAEIQFESGYPYIMFEDTVNRANPID--GKIT 398 Query: 581 SSNLCTEITLNSS--------SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI SS S ET CNLGS+N+ D +I T+ Sbjct: 399 MSNLCSEILQVSSPSIYAEDLSYETVGKDISCNLGSMNIA-----KTMDSPDFGLSIETS 453 Query: 629 VRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D++ +++ + N AIGLG M L H+ Y S E ++ + Sbjct: 454 IRALSAVSDMSYINSVPSIAQGNAQSHAIGLGQMNLHGYLAREHVHYGSEEGLDFTNIYF 513 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741 + FHA+ AS LA E G + F+ S + G F + + VR+ A + Sbjct: 514 YTVLFHALRASNRLAIETGQKFGGFEKSTYASGEFFDKYTEQEWVPETERVRELFAGHHI 573 Query: 742 -SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 ++ W ELK V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 574 PTQDDWRELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKIGRV 633 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +L N+ N+E D A+EI +I++ Sbjct: 634 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKIIDT 662 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 663 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-LALEGTEVEG 721 >gi|313206312|ref|YP_004045489.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella anatipestifer DSM 15868] gi|312445628|gb|ADQ81983.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella anatipestifer DSM 15868] gi|315023178|gb|EFT36189.1| ribonucleotide-diphosphate reductase subunit alpha [Riemerella anatipestifer RA-YM] gi|325336243|gb|ADZ12517.1| Ribonucleotide reductase, alpha subunit [Riemerella anatipestifer RA-GD] Length = 551 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 170/569 (29%), Positives = 260/569 (45%), Gaps = 110/569 (19%) Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 S+P N GT+ SCF +PD + GI + E M K GG + +R G Sbjct: 65 SSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELRHRGTA 124 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + NGKS G + F+K+ + V+QGG R+GA AYL+ H D+EEFL ++ D Sbjct: 125 VT-DNGKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLTIK----DIG 179 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 ++ T +PD +M+ D+ D G+ Sbjct: 180 SPIQNLFTGVCVPDYWMQ-----------------DMID-------------------GD 203 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590 I RKI W K+L + G P++ F D N PQ + +V++SNLC+EI L Sbjct: 204 IDK-RKI-----WAKVLESRQQKGLPYVFFTDNVNRNKPQVYKDKGLLVNASNLCSEIML 257 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIE 644 S+ EE+ +C L S+NL +D K + ++ A+ LD V+ + ++ Sbjct: 258 PSTQEESFICCLSSMNL------ELYDEWKDTNAVKLAIYFLDAVLSEFIEKTEGNYYLQ 311 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 A+ HRA+GLG++G+ S L IP+ S EA + + + I A +AS ELA Sbjct: 312 GARNFAMKHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFKHIKEQAEAASKELANI 371 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G KG GMRN+ M Sbjct: 372 YGEPELLKG------------------------------------------YGMRNTTLM 389 Query: 765 AIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAPT + + I G S I+P N Y G+F N +L L+++ L +E + Sbjct: 390 AIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLKKLLEEKGLENEETWRN 449 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG- 882 + + GS+ +++ + ++ K + T EI PM +I A++RQ++IDQAQSLNL + PS Sbjct: 450 IMLNHGSVQHLDGLTEEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQI--PSTM 507 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 K ++F+ +AW G+KT YY RS S + Sbjct: 508 PVKDVNFLMIEAWKKGIKTLYYQRSSSVS 536 >gi|62181311|ref|YP_217728.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128944|gb|AAX66647.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715797|gb|EFZ07368.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 714 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 191/659 (28%), Positives = 303/659 (45%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +N LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENVQMALFSP---YDIQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|59859089|gb|AAX09329.1| NrdE [Corynebacterium stationis] Length = 720 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 183/647 (28%), Positives = 288/647 (44%), Gaps = 68/647 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y F F+ +LG Y Y L R + + F RV+M A + Sbjct: 98 YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 156 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S F +TPT N+G + +L SCFL + D++ I A+ + L+K GG+ Sbjct: 157 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 216 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I +S G+IP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 217 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 276 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE 523 ++ D++ R ++ IPD+ +N LFSP D+ +YGK F +I+ Sbjct: 277 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVS 333 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 ++ + +KI+A ++ + + FE+G+P+I F+D N +P + G ++ SN Sbjct: 334 DHYAEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSN 392 Query: 584 LCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS S EE CNLGS+N+ D T+ A+R Sbjct: 393 LCSEILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDSPDFGGTVEAAIRG 447 Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D ++ + N AIGLG M L HI Y S E ++ + + Sbjct: 448 LTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAV 507 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRL 744 + A+ AS ++A+ERG +S FK S + GVF P + +V+ EL N T Sbjct: 508 LYAALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVK-ELFANSTIHT 566 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W +LK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 567 PSAEDWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 619 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 E I + Y + N D+L A+E+ +I++ Sbjct: 620 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEVGHEKIIDTY 656 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 657 AVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLR 703 >gi|301633424|gb|ADK86978.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma pneumoniae FH] Length = 721 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 166/613 (27%), Positives = 280/613 (45%), Gaps = 69/613 (11%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381 RV M + +A++ + + F +TPT N+G + + SC+L + D++ Sbjct: 127 RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNME 186 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A+ L+K GG+ T +R GA I +S +IP +K+ D+ NQ Sbjct: 187 SIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSDIIPIMKLLEDSFSYANQL 246 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R+GA YL H DV +FLD ++ D++ R ++ IPD+ N L Sbjct: 247 GQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKNNEEMAL 306 Query: 502 FSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 FSP D+++ YGK + + YE A++ K F I+A ++ + + FE+G+ Sbjct: 307 FSP---YDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVAELHFESGY 361 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSIN 606 P+I F D N R+ H + SNLC+EI S+ E CNLGS+N Sbjct: 362 PYILFDDTVNRRNA--HPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLN 419 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQS 665 + + + + ++ A+ LD V + N T +K N + A+GLG M Sbjct: 420 IAKAMESG----PEFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHG 475 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------GSLWDQG 719 L I Y SPEA++ + +++HA AS ELA E+G + +F+ GS +D+ Sbjct: 476 FLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKY 535 Query: 720 V-----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + F + + + + +R W EL ++ G+ NS+ +AIAPT +I+ Sbjct: 536 IKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISY 595 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + V+ V ++ +N +D + Y DG Sbjct: 596 LSSCTPSLQPVVSPVEVRKEGRLGRIYVPAYQLN----KDSYP-------FYKDG----- 639 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 A+E+ P +I A+ Q+ +DQA SL L++ D+ + + L+ Y A+ Sbjct: 640 -------------AYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAF 686 Query: 894 LMGLKTTYYLRSR 906 G + YY+R R Sbjct: 687 KKGCSSIYYVRVR 699 >gi|15672957|ref|NP_267131.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. lactis Il1403] gi|12723918|gb|AAK05073.1|AE006332_2 ribonucleoside-diphosphate reductase alpha chain [Lactococcus lactis subsp. lactis Il1403] gi|326406519|gb|ADZ63590.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus lactis subsp. lactis CV56] Length = 722 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 199/720 (27%), Positives = 319/720 (44%), Gaps = 91/720 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288 +E +T +K+ + +E + EE ++A L + +F + L +L K+E Sbjct: 32 KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 F ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148 Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TPT N+G R + SCFL + DD+ I + L+K GG+G + T + Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524 D++ R ++ +PD F + V + LF P V YGK F +I E Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y++ EI+ I+A L +++ + E+G+P+I D N +P GV+ SNL Sbjct: 325 YDKMVANPEIRK-TSINARELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI LN V CNLGS N+L ++ ++ ++I VR L Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----NEFGTSIEAMVRAL 437 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 + + N T+ +K N AIGLG MG S L I Y S EAVE ++ Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497 Query: 692 FHAISASVELAQERGAYSSFK---------GSLWDQGVFPIDSIGLLAEVRDEL--AMNR 740 ++ + AS +LA E+G SSFK GS +D+ D ++ EL + Sbjct: 498 YYTLVASNKLAVEKG--SSFKNFEKSAYADGSYFDK-YLTHDYFAAVSSKVQELFKGIAV 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W L+ VKT G+ NS MA+AP +I+ I S SI P Sbjct: 555 PTIEDWTALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP---------------- 598 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +++R E + + Y + E IP + +A++ D +I+ Sbjct: 599 -----IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVY 644 Query: 861 SRRQKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ P G + L + A+ G+KT YY+R+ Sbjct: 645 AAATEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|203288310|ref|YP_002223360.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia recurrentis A1] gi|201085530|gb|ACH95103.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia recurrentis A1] Length = 707 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 159/588 (27%), Positives = 284/588 (48%), Gaps = 62/588 (10%) Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT N+G +L SCFL V D L I + L+K GG+ + + +R G Sbjct: 160 ATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRARGE 219 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G ++GVIP +K+ D +Q G+RKGA YL +H D+E+FLD +K D+ Sbjct: 220 EIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINADE 279 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + R ++ IPD F + Q+ + +P V L + + ++Y+ A Sbjct: 280 KSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFD-KDYDLLASNP 338 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---- 588 I + ++ISA + ++ + FE+G+P+I ++ CN+ P + VG V SNLCTEI Sbjct: 339 RI-IKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKMSNLCTEIFQIQ 397 Query: 589 ---TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 + + E + C LGS+N++ + N+ F++ + A+R L +V+D +C Sbjct: 398 TPSVIGNYGEGDVIGYDVSCILGSLNIV-NVINSDFEF-----IVDLAMRALTSVVDKSC 451 Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +K+N +RA+GLG+M L IPY S EA++ ++F+++ +S+ Sbjct: 452 INNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFMLLNFYSLKSSM 511 Query: 700 ELAQERGA-YSSFKGSLWDQG----VFPIDSIGLLAEVRDEL--AMNRTSRLPWDELKKR 752 +A+ER + + FK S + G ++ + +EV E+ + S+ W+ LK Sbjct: 512 NIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIPSKSDWNNLKGD 571 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 ++ G+ ++ +A+APT +I+ I + S+ P +V ++ Sbjct: 572 IQRYGLYHAYRLAVAPTQSISYIQNATTSLMP---------------------IVEPVEA 610 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R + + Y + + +A+ +D LI+ S Q+ +DQ S Sbjct: 611 RVYGNSTTYYPMPY----------LSRENAIFFKSAYYMDMRKLIDLVSEAQRHVDQGIS 660 Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 LY+ +E S ++L +Y A GLK+ YY R+++ SV++ L + Sbjct: 661 TLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 707 >gi|194427894|ref|ZP_03060440.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] gi|194414127|gb|EDX30403.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] Length = 714 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 190/681 (27%), Positives = 312/681 (45%), Gaps = 78/681 (11%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGV-VHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609 ++D N +P + V ++ SNLC+EI +NS+SE CNLGS+N +A Sbjct: 368 YEDTVNRANP---IAVRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ NE + A+ D Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708 >gi|205357273|ref|ZP_02346446.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322676|gb|EDZ10515.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 714 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 191/659 (28%), Positives = 303/659 (45%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +N LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENVQMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|296128312|ref|YP_003635562.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas flavigena DSM 20109] gi|296020127|gb|ADG73363.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas flavigena DSM 20109] Length = 719 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 182/648 (28%), Positives = 296/648 (45%), Gaps = 71/648 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y + F F+ +LG Y Y L +G R + F RV M LAL E +++ A+ Sbjct: 98 YSKKFRFQTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALALAEGDQD-FAMNLV 154 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + S F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 155 DEIVSGRFQPATPTFLNLGKAQRGEPVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 214 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 215 LLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 274 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + + Sbjct: 275 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEPMYLFSPYDVERVYGVPFADVNVTE 334 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + YE D+ K KI+A ++ + + FE+G+P++ F+D N +P + G + S Sbjct: 335 KYYEMVDDKRIRKT--KINAREFFQTLAEIQFESGYPYVMFEDTVNRANPIE--GKITHS 390 Query: 583 NLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI T ++ +E+ + CNLGS+N+ D L T+ TA+R Sbjct: 391 NLCSEILQVSTPSTFNEDLSYDHVGRDISCNLGSMNIAL-----SMDSPDLGKTVETAIR 445 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D N ++ K++N AIGLG M L I Y S E ++ + Sbjct: 446 ALTAVSDQTNIESVPSIKRANAGGHAIGLGQMNLHGYLARERIFYGSDEGLDFTNIYFYT 505 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740 +++HAI AS LAQER A + F+ S + G + + + + DE ++ Sbjct: 506 VAYHAIRASNLLAQERKASFFGFERSAYATGEYFTKYVEKEWKPRTARVQALFDEAGVHI 565 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 ++ W EL + V+ G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 566 PTQDDWRELAELVRVHGLYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRV 625 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 F+ N+ N+E D A+EI +I++ Sbjct: 626 YYPAPFMTND-----------------------NLEYYQD--------AYEIGFEKVIDT 654 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + + +DQ SL L+ D + + L+ AW G+KT YY+R R Sbjct: 655 YAEATQHVDQGLSLTLFFKDTATTRDLNKAQIYAWKKGIKTIYYIRLR 702 >gi|218442223|ref|YP_002380552.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp. PCC 7424] gi|218174951|gb|ACK73684.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp. PCC 7424] Length = 1123 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 235/458 (51%), Gaps = 38/458 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K++++ DG+ + N ++ +VE AC G +DV+ + + + +G++ +++ LI Sbjct: 36 KIQVVKRDGSKAALNIAKIREVVEWACVG-KDVNPIALEAGLTTRLRNGITTREIQDNLI 94 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + +EP++ V R + L ++ L + Y Y ++ Sbjct: 95 NCALEMCSPEEPDWRYVAGRLHIWSLWKDTLANRGYQ------------YGNY-----DQ 137 Query: 263 GVKARLLHESMMDFDLVYLANDLK-------YERDFAFEYLGLQILYDRYFLHINGSRIE 315 VK ++ H LVY + +L+ + D ++Y G +L RY L E Sbjct: 138 TVKTKIDHNQYDRRILVYSSEELQEAGTWINSDWDTDYDYAGAVLLTSRYLLPD-----E 192 Query: 316 MPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +PQ + A+ LA ET + K A +FY ++ +TP L N + L+SCF+ Sbjct: 193 LPQEALLTCALLLASVETPENRLKWARKFYEAIAKRQISLATPILANLRVPNGSLTSCFI 252 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + + D+L IF + A ++K GG+G + + +R G+ + S GVIP++K+ ND Sbjct: 253 SAIDDNLESIFSEVTNTAKISKNGGGVGINVSRIRATGSWVMNKPNASGGVIPWIKILND 312 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TA+AVNQGG+R GAV L+ WH+DV EFL+++ GD RR+ +D+ + D FM+RV Sbjct: 313 TAIAVNQGGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVMADEFMRRV 372 Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 WTL P E+ +L +L+G+EFE Y E GEI ++++++A L++ Sbjct: 373 IHKQEWTLVDPYEIRTKFGVELAELWGEEFEQVYSKIETAIHNGEITLYKRVNARELFKH 432 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++ ETG P++ FKD N +P +H G + NLC Sbjct: 433 IMRSQLETGMPYLAFKDTINRANPNKHEGYIPGVNLCV 470 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 103/365 (28%), Positives = 151/365 (41%), Gaps = 68/365 (18%) Query: 572 PQQHVGVVHS--SNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 P +H+G+ + + CTE N E+ CNL S+NL AN D L T + A Sbjct: 803 PLRHLGMFNGILTGQCTESFSNVKPGLESHCCNLVSLNL----AN--LDNSDLEDTCKIA 856 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDN ID+ E AK N+ +R IG+G MG L + Y E + E Sbjct: 857 VRLLDNTIDLTHPPFEAAKNHNNLYRTIGVGCMGLADWLAKRRLSY---EHLTDISHLFE 913 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I + +S+EL+QERGAY+ F GS W QG IG ++ + N W + Sbjct: 914 EIGYWCTLSSMELSQERGAYACFPGSDWSQGKL----IG--SKPVEWFIENAHHPERWAK 967 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L + ++ G+RNS+ AIAP + + + G + S+ P Y + G + F+ Sbjct: 968 LAEDIQLYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPIAPPFI-- 1025 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + W + K +D + K + A A Q+WID Sbjct: 1026 ---KESFW---FYPENKTYDQN-----------KVVKAIAV-------------MQQWID 1055 Query: 869 QAQSLNLYLDEPSGK----------KLDFIYRQ---AWLMGLKTTYYLRSRSATSVEKST 915 S+ L + G K IY AW G K YY+R +V+K Sbjct: 1056 TGISMELLFNLNQGVYFPEDPERFLKAKDIYDTLILAWREGCKAVYYIR-----TVQKDN 1110 Query: 916 LKGVD 920 K D Sbjct: 1111 FKDSD 1115 >gi|152971533|ref|YP_001336642.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956382|gb|ABR78412.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 693 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 178/621 (28%), Positives = 285/621 (45%), Gaps = 71/621 (11%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA + ++ ++ E +LS F +TPT N+G + +L SCFL + D++ Sbjct: 112 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 168 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ + +R GA I +S GV+P +K+ D NQ G Sbjct: 169 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 228 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA +L H D+ FLD R+ D++ R ++ IPD+ + ++A LF Sbjct: 229 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 288 Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 SP D+ LYGK F + A + Q E R I A L++++ + FE+G+P+I Sbjct: 289 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 345 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609 F+D N SP G V SNLC+EI S+ E CNLGS+N +A Sbjct: 346 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 402 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D TI TAVR L V D++ ++ N AIGLG M L Sbjct: 403 H----TMDSPDFGRTIATAVRALTAVSDMSHIQSVPSVAAGNAASHAIGLGQMNLHGYLA 458 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727 I Y SPE ++ + +++HA+ S++LA+ERG ++ F+ S + G + + Sbjct: 459 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAYFDKYLQ 518 Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + E +R LP W +L+ V G+ N A+ PT +I+ I + Sbjct: 519 EEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 578 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ N Sbjct: 579 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 608 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D+L ++ A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 609 DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 667 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 668 KTLYYIRLRQ-LALEGTEIEG 687 >gi|319404591|emb|CBI78197.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella rochalimae ATCC BAA-1498] Length = 716 Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 191/676 (28%), Positives = 299/676 (44%), Gaps = 74/676 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMP 317 IEE R L E + DF V Y F F +LG Y Y L +G R Sbjct: 69 IEEKYYERELFE-LYDFSFVKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKR--YL 125 Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + + RV + +AL + K E + + + F +TPT N+G + +L SCFL Sbjct: 126 ERYEDRVCL-VALYLAQGSKSLAEGLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ D Sbjct: 185 VEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKKIENQSSGVLPVMKMLEDVF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553 N LFS D+ + GK F +I+ E+Y D +I+ +KISA ++ + + Sbjct: 305 NEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSKIRK-KKISARVFFQTLAEIQ 360 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601 FE+G+P+I F+D N +P G + SNLCTEI S + E CN Sbjct: 361 FESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEASELETDLTYRAVGNDISCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + D T+ AVR L V D+ N + K N AIGLG Sbjct: 419 LGSMNIA-----KAMESDNFGRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y +PEA++ + +++HA+ AS +A+ER + F+ S + G Sbjct: 474 MNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERKEVFVGFEKSAYADG 533 Query: 720 VFPIDSIGLLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTAT 771 F I + + EL +R +P W ELK+ V G+ N A+ PT + Sbjct: 534 HFFTKYIEKEWKPQFELVQKLFTRNNIVIPNQKDWQELKQLVAQYGLYNRYLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P + ++ E I + Y + Sbjct: 594 ISYINYATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N + + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 630 DNTNL------EFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLRSR 906 AW G+K+ YY+R R Sbjct: 684 YAWKKGIKSLYYVRLR 699 >gi|32491359|ref|NP_871613.1| ribonucleotide-diphosphate reductase subunit alpha [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166566|dbj|BAC24756.1| nrdE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 704 Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 177/600 (29%), Positives = 268/600 (44%), Gaps = 67/600 (11%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 EK A+ + S F +TPT N G + + SCFL + D++ I AL L+ Sbjct: 132 EKFAINIMQEILSGRFQPATPTFLNCGKKQRGEYVSCFLLRIEDNMESIGRALNSALQLS 191 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+ T +R GA I +S G++P +K+ D NQ G R+GA YL Sbjct: 192 KRGGGVSFLLTNLRESGAPIKCIKNQSSGIVPVMKMLEDAFSYANQLGARQGAGAVYLHA 251 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D+ FLD ++ D++ R ++ IPD+ K +N LFSP D+ +Y Sbjct: 252 HHPDILNFLDTKRENADEKIRIKTLSLGVIIPDITFKLAKENQNMCLFSP---YDIKKVY 308 Query: 515 GKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 K F I + Y + + IK I+A + ++K+ + FE+G+P+I F+D N +P Sbjct: 309 NKPFSELIISKIYYKLINDIRIKKI-SINARSFFQKLAEVQFESGYPYIMFEDTVNKENP 367 Query: 573 QQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDK 620 G ++ SNLC+EI +N++SE CNLGS+N+ D Sbjct: 368 I--YGKINMSNLCSEILQVNTASEYNEDLSYKKIGRDISCNLGSLNIA-----KTMDSSN 420 Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L T+ A+R L V DI +++ K N +IGLG M L +I Y SPEA Sbjct: 421 LGKTVEVAIRCLTAVSDITKINSVSSVVKGNKKSHSIGLGQMNLHGYLARENIFYGSPEA 480 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL----AEVRD 734 +E + I++HAI S LA ER +S F S + G F ++ Sbjct: 481 IEFTNFYFYVITYHAIRTSNLLAIERKKTFSGFSRSKYANGKFFKKYTKKTWIPKSDRIL 540 Query: 735 ELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 L N LP W L+ V G+ N N AI PT +I+ I + SI P Sbjct: 541 NLFNNNNIHLPTLKEWKILENSVMKYGLYNQNLQAIPPTGSISYINYSTSSIHP------ 594 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +V+ ++ R E I + Y + N + A+E Sbjct: 595 ---------------VVSRIEIR---KEGKIGRVYYPAPYMTNKNLC------YYQDAYE 630 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 I P +I++ + K +DQ SL L+ D+ + + ++ AW G+KT YY+R R T Sbjct: 631 IGPKKIIDTYAAATKHVDQGLSLTLFFRDDATTRDINKAQIYAWKKGIKTLYYVRIRQLT 690 >gi|238896130|ref|YP_002920866.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|238548448|dbj|BAH64799.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 713 Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 178/621 (28%), Positives = 285/621 (45%), Gaps = 71/621 (11%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA + ++ ++ E +LS F +TPT N+G + +L SCFL + D++ Sbjct: 132 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ + +R GA I +S GV+P +K+ D NQ G Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA +L H D+ FLD R+ D++ R ++ IPD+ + ++A LF Sbjct: 249 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308 Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 SP D+ LYGK F + A + Q E R I A L++++ + FE+G+P+I Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609 F+D N SP G V SNLC+EI S+ E CNLGS+N +A Sbjct: 366 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 422 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D TI TAVR L V D++ ++ N AIGLG M L Sbjct: 423 H----TMDSPDFGRTIATAVRALTAVSDMSHIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727 I Y SPE ++ + +++HA+ S++LA+ERG ++ F+ S + G + + Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAYFDKYLQ 538 Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + E +R LP W +L+ V G+ N A+ PT +I+ I + Sbjct: 539 EEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 598 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ N Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D+L ++ A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 629 DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707 >gi|227542804|ref|ZP_03972853.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] gi|227181430|gb|EEI62402.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] Length = 718 Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 190/674 (28%), Positives = 306/674 (45%), Gaps = 76/674 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 +F+ + D Y F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 85 NFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLKTFDGQRYLERFEDRVCMVALTLAAG 144 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + + V+ L F +TPT NSG + + SCFL + D++ I A+ Sbjct: 145 DEDLARNLVDEIIL---GRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRAINSA 201 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA Sbjct: 202 LQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 261 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ +FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 262 YLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP---YDV 318 Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +YGK F I+ YE D K KI+A ++ + + FE+G+P+I ++D Sbjct: 319 ERVYGKAFADVSISEHYYEMVEDPRIHKT--KINARHFFQTLAEIQFESGYPYIMYEDTV 376 Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615 N +P + G V SNLC+EI + + SE E CNLGS+N+ + Sbjct: 377 NRANPIE--GRVTQSNLCSEILQVATPSEYNADLSYATVGEDISCNLGSLNIAMAMDSTD 434 Query: 616 FDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 F A+TI TA+R L V + + ++ KK N AIGLG M L HI Y Sbjct: 435 F-----ATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAIGLGQMNLHGYLGREHIHY 489 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID---S 725 S EA++ + + + + AS ++A+ERG ++ F S + G F P + Sbjct: 490 GSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSDYASGAFFDRYDPAEFAPK 549 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + D ++ + W ELK+ V G+ N A+ PT +I+ I + SI P Sbjct: 550 TDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVPPTGSISYINNSTSSIHPI 609 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + ++ E I + Y + N D+L+ Sbjct: 610 ASRIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFQ 640 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A+EI +I++ + K++DQ SL L+ D S + ++ AW G+KT YY+R Sbjct: 641 -DAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDINRAQIYAWTHGIKTLYYIR 699 Query: 905 SRSATSVEKSTLKG 918 R ++E + ++G Sbjct: 700 LRQ-VALEGTEVEG 712 >gi|282599613|ref|ZP_06257324.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] gi|282568716|gb|EFB74251.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] Length = 710 Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 183/660 (27%), Positives = 298/660 (45%), Gaps = 72/660 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343 Y F F+ +LG Y Y L +G R + + RV M L L + K ++ Sbjct: 89 YAHKFRFKTFLGAFKYYTSYTLKTFDGQR--YLERYEDRVCMVALTLAQGSKSLASLLVD 146 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 ++S F +TPT N G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 147 EIISG-RFQPATPTFLNCGKKQRGELISCFLLRIEDNMESIGRSVNSALQLSKRGGGVAF 205 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GV+P +K+ D NQ G R+GA YL H D+ F Sbjct: 206 LMTNLREQGAPIKHIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRF 265 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + N LFSP +V + + E ++ Sbjct: 266 LDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNEDMYLFSPYDVQREYGVAMSEISVS- 324 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y + IK F KI+A ++ + + FE+G+P+I F+D N +P G ++ S Sbjct: 325 EKYHEMVNNKAIKKF-KINAREFFQTIAEIQFESGYPYILFEDTANRENPI--AGRINMS 381 Query: 583 NLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI +N S + CNLGS+N+ + D A +I TAVR Sbjct: 382 NLCSEILQVNQPSTYEDDLNYKTVGKDISCNLGSMNIAS-----TMDSPDFALSIETAVR 436 Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D++ +++ + N AIGLG M L HI Y S + ++ + Sbjct: 437 ALTAVSDMSYINSVPSIAQGNQQSHAIGLGQMNLHGYLAREHIYYGSEQGLDFTNIYFYT 496 Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL----AEVRDELAMNRTSRL 744 ++++A+ S +LA ER + F S + G + I + + EL ++ Sbjct: 497 VAYYALKTSNQLAIERQQTFDGFSASKYASGEYFDKYINKIWSPKTQTVQELFRRSGIKI 556 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 P W LK+ V T G+ N N AI PT +I+ I + SI P + + K G Sbjct: 557 PTQADWLALKQSVMTYGIYNQNLQAIPPTGSISYINNSTSSIHPVVAPIEIRKEGKIGRV 616 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 F+ NE +LK++ A++I P +I++ Sbjct: 617 YYPAPFMTNE-------------NLKFYQ------------------DAYQIGPEKIIDT 645 Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + + ++ AW G+KT YY+R R T++E + ++G Sbjct: 646 YAEATQHVDQGLSLTLFFDGDATTRDINRAQIYAWRKGIKTLYYIRLRQ-TALEGTEVEG 704 >gi|300780545|ref|ZP_07090400.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium genitalium ATCC 33030] gi|300533531|gb|EFK54591.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium genitalium ATCC 33030] Length = 720 Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 184/675 (27%), Positives = 301/675 (44%), Gaps = 77/675 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 D+D V Y F F+ +LG Y Y L R + + F RVAM Sbjct: 86 DWDFVKSTFKRAYAFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVAMTALFLAD 144 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 E+ A + + + F +TPT N+G + +L SCFL + D++ I A+ + Sbjct: 145 GNEEIASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQ 204 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 265 NAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVER 321 Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YG F +I+ E Y+ + I+ KI A ++ + + FE+G+P+I F+D N Sbjct: 322 VYGVPFADISVTEKYDEMVEDPRIRK-TKIKARQFFQTIAEIQFESGYPYILFEDHANRA 380 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS+S CNLGS+N+ D Sbjct: 381 NPVK-TGRINMSNLCSEILQVNSASVLNEDLTYDTIGHDISCNLGSLNIAM-----AMDS 434 Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 D + T+ TA+R L V D + ++ ++ N AIGLG M L HI Y S Sbjct: 435 DNFSRTVETAIRGLTAVADKTSIDSVPSVREGNDASHAIGLGQMNLHGYLGREHIEYGSE 494 Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PID---SIGL 728 E ++ + I + + AS ++A E+G ++ F+ S + G F P D Sbjct: 495 EGLDFTNAYFATIMYECLKASHKIAVEKGQRFAGFEDSEYASGEFFDRYNPADFQPKTQR 554 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D + S W++LK V G+ N A+ PT +I+ I + SI P Sbjct: 555 VKELFDGSSAQPPSAEEWEQLKADVARDGIYNRYLQAVPPTGSISYINNSTSSIHPIASK 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-- 846 + ++ +G IG + + +A Sbjct: 615 IEIRK----------------------------------EGKIGRVYYPAPHMDNENAGY 640 Query: 847 --TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 641 FKDAYEIGFEKIIDTYAEATKYVDQGLSLTLFFKDTVTTRDINRAQIYAWRKGIKTLYYI 700 Query: 904 RSRSATSVEKSTLKG 918 R R ++E + ++G Sbjct: 701 RLRQ-MALEGTEVEG 714 >gi|238796651|ref|ZP_04640157.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] gi|238719382|gb|EEQ11192.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] Length = 693 Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 183/675 (27%), Positives = 304/675 (45%), Gaps = 78/675 (11%) Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + Y + F F +LG Y Y L +G R +E + VA+ LA Sbjct: 60 DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + VE + S F +TPT N G + +L SCFL + D++ I ++ Sbjct: 120 NPQLARELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V + Sbjct: 237 YLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVEQV 296 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E I+ E Y D I+ KI A ++ + + FE+G+P++ F+D N Sbjct: 297 YGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFESGYPYMMFEDTVNRA 354 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +NS +E + CNLGS+N+ AH D Sbjct: 355 NPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRQIGKDISCNLGSLNI-AH----TMDS 407 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +I TA+R L V D+ + ++ +K N AIGLG M L I Y S Sbjct: 408 PDFGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467 Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GL 728 EA++ + +++HAI AS LA ERG + F S + G + + Sbjct: 468 EALDFTNIYFYTVAYHAIRASNLLAIERGCHFKGFDESTYASGSYFTKYVEQRWQPKTAK 527 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + + ++ + W L++ V G+ N N A+ PT +I+ I + SI P Sbjct: 528 VQALFADAGIHIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP---- 583 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844 +V+ ++ R +G IG + + +D + Sbjct: 584 -----------------IVSPIEIRK-------------EGKIGRVYYPAPYMTNDNLEY 613 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A++I P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 614 YQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKRGIKTIYYI 673 Query: 904 RSRSATSVEKSTLKG 918 R R ++E + ++G Sbjct: 674 RLRQ-MALEGTEVEG 687 >gi|229493417|ref|ZP_04387206.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus erythropolis SK121] gi|229319733|gb|EEN85565.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus erythropolis SK121] Length = 727 Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 186/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 D Y + F F +LG Y Y L +G R + F RV M E AVE Sbjct: 103 DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLAAGNEDLAVE 160 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 161 LVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGV 220 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 T VR GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 221 ALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIY 280 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + + Sbjct: 281 RFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINV 340 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 + + YE D+ K KI A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 341 SEKYYEMVDDKRIRK--SKIKAREFFQTVAELQFESGYPYIMFEDTVNRANPIE--GKIT 396 Query: 581 SSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI S+ + CNLGS+N+ D A TI + Sbjct: 397 HSNLCSEILQVSTPSLFNDDLSYSKVGKDISCNLGSLNIA-----KTMDSPDFAKTIEVS 451 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + +++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 452 IRGLTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYF 511 Query: 688 EFISFHAISASVELAQERGAYSSFKG---SLWDQGVF-----------PIDSI-GLLAEV 732 + FHA+ AS ++A ERG+Y FKG S + G F D + GL A+ Sbjct: 512 YTVLFHALRASNKIAIERGSY--FKGFPESKYASGEFFDKYTDQAWEPATDKVRGLFADA 569 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV- 791 + ++ ++ W ELK V+ G+ N N A+ PT +I+ I + SI P + + Sbjct: 570 K----LHIPTQDDWRELKASVQKHGIYNQNLQAVPPTGSISYINYSTSSIHPVASKIEIR 625 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K G +L N+ N+E D A+EI Sbjct: 626 KEGKIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEI 654 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 655 GYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MA 713 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 714 LEGTEVEG 721 >gi|327394923|dbj|BAK12345.1| ribonucleoside-diphosphate reductase 2 alpha subunit NrdE [Pantoea ananatis AJ13355] Length = 693 Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 185/663 (27%), Positives = 303/663 (45%), Gaps = 77/663 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF+ V +D FAF+ +LG Y Y L +G R +E + VA+ LA Sbjct: 60 DFNFVCGLHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFEQRACMVALTLAQG 119 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + +E + S F +TPT NSG + +L SCFL + D++ I A+ Sbjct: 120 DEPLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIEDNMESIGRAVNSA 176 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 177 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 236 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 +L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 237 WLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQPMALFSP---YDV 293 Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +YG+ F I+ + E AD K + I ++ + + FE+G+P+I ++D Sbjct: 294 ERIYGQAFGDISISEKYAEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 351 Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615 N +P G ++ SNLC+EI +NS+SE + CNLGS+N +AH Sbjct: 352 NRDNP--IAGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGSLN-IAH----A 404 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D LA T+ TA+R L V D+ + ++ + N AIGLG M L I Y Sbjct: 405 MDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGIAY 464 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------- 726 SPEA++ + ++++A+ AS +LA+ER + F S + G + + Sbjct: 465 GSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQSDWQPR 524 Query: 727 -GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +A + + ++ W L++ V G+ N N AI PT +I+ I + SI P Sbjct: 525 TARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHATSSIHPI 584 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + K +G F+ N+ N+E + Sbjct: 585 VSRIEIRKEGKTGRVYYPAPFMTND-----------------------NLE--------L 613 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+ Sbjct: 614 YQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 673 Query: 904 RSR 906 R R Sbjct: 674 RLR 676 >gi|238790128|ref|ZP_04633905.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] gi|238721797|gb|EEQ13460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] Length = 693 Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 193/688 (28%), Positives = 312/688 (45%), Gaps = 75/688 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 +EEG + + E +F + Y + F F +LG Y Y L +G R +E Sbjct: 46 VEEGYYEKEVLERY-NFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTT 375 + VA+ LA + + VE ++S F +TPT N G + +L SCFL Sbjct: 105 YEDRVCMVALTLAAGNPQVARDLVE---EMTSGRFQPATPTFLNCGKNQRGELVSCFLLR 161 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 162 MEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 281 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP +V ++ + E I+ E Y D I+ KI A ++ + + FE Sbjct: 282 NEEMYLFSPYDVELVYGVPMSEISIS-EKYREMVDDKRIRK-SKIKAREFFQILAEIQFE 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +NS +E + CNLG Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYHHIGKDISCNLG 397 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ AH D +I TA+R L V D+ N ++ +K N AIGLG M Sbjct: 398 SLNI-AH----TMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721 L I Y S EA++ + + +HAI AS LA ERG+ + F S + G + Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVVYHAIRASNLLAIERGSHFKGFDESDYASGRY 512 Query: 722 PIDSIGL-----LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATI 772 + A+V+ A + + +P W++L+ V G+ N N AI PT +I Sbjct: 513 FTKYVEQSWQPKTAKVQALFAKSGIA-IPNQQDWEKLRNSVMEHGIYNQNLQAIPPTGSI 571 Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + + K G ++ NE Sbjct: 572 SYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTNE---------------------- 609 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N+E D A++I P +I++ + + +DQ SL L+ D + + ++ Sbjct: 610 -NLEYYQD--------AYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQI 660 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 661 YAWQKGIKTIYYIRLRQ-MALEGTEVEG 687 >gi|227488206|ref|ZP_03918522.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227091776|gb|EEI27088.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] Length = 718 Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 190/674 (28%), Positives = 305/674 (45%), Gaps = 76/674 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 +F+ + D Y F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 85 NFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLKTFDGQRYLERFEDRVCMVALTLAAG 144 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + E A + + F +TPT NSG + + SCFL + D++ I A+ Sbjct: 145 D---ENLARNLVDEIILGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRAINSA 201 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA Sbjct: 202 LQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 261 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ +FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 262 YLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP---YDV 318 Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +YGK F I+ YE D K KI+A ++ + + FE+G+P+I ++D Sbjct: 319 ERVYGKAFADVSISEHYYEMVEDPRIHKT--KINARHFFQTLAEIQFESGYPYIMYEDTV 376 Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615 N +P + G V SNLC+EI + + SE E CNLGS+N+ + Sbjct: 377 NRANPIE--GRVTQSNLCSEILQVATPSEYNADLSYATVGEDISCNLGSLNIAMAMDSTD 434 Query: 616 FDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 F A+TI TA+R L V + + ++ KK N AIGLG M L HI Y Sbjct: 435 F-----ATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAIGLGQMNLHGYLGREHIHY 489 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID---S 725 S EA++ + + + + AS ++A+ERG ++ F S + G F P + Sbjct: 490 GSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSDYASGAFFDRYDPAEFAPK 549 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + D ++ + W ELK+ V G+ N A+ PT +I+ I + SI P Sbjct: 550 TDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVPPTGSISYINNSTSSIHPI 609 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + ++ E I + Y + N D+L+ Sbjct: 610 ASRIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFQ 640 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A+EI +I++ + K++DQ SL L+ D S + ++ AW G+KT YY+R Sbjct: 641 -DAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDINRAQIYAWTHGIKTLYYIR 699 Query: 905 SRSATSVEKSTLKG 918 R ++E + ++G Sbjct: 700 LRQ-VALEGTEVEG 712 >gi|119872039|ref|YP_930046.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum islandicum DSM 4184] gi|119673447|gb|ABL87703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum islandicum DSM 4184] Length = 844 Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 199/775 (25%), Positives = 350/775 (45%), Gaps = 104/775 (13%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P A+V LL ++ +EV + K K+ + E RY + L ES+ Sbjct: 67 PELAEVAKSHLLGRIYKEVFGKDFLK-HKSGYLERA------LARYRQLAEAGLLKEESL 119 Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMRVAMGLALK 331 + A + + + D + Y L++ + Y L R+ E P RVA +A + Sbjct: 120 RLLE----AFEPRPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAAWRVATAVA-R 174 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGI 383 + E +R +Y+ ++S + ++P FN+ T+ +SCF V D L + I Sbjct: 175 DVETARR---YYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLSHPGRFCI 231 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + AL + ++ + GG+G D++ +R G + G+ G + G + F+K+ + + QGGK Sbjct: 232 YDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDTNVEVIKQGGK 291 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR---VTQNAGWT 500 R+GA L WH DV +F+ + D + N + ++ D FM++ + ++ + Sbjct: 292 RRGAQMGTLHVWHPDVRKFIKAKTGELKD-AHLQNFNISVFVDDAFMEKALGLDKDPKYP 350 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW-------RKMLTML 553 L +P I E R+ E +V AVA W R++ Sbjct: 351 LVNP--------------RIYLERTGRKPVE-ETRVSPPQEAVAGWVDARELFREIAEGA 395 Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +++G P + +KD N +P + + + N C+E N VCNL Sbjct: 396 WDSGDPGVIYKDNLNASNPLLGEEIEVAGHRFRYIWRAVNPCSETHQNPFE----VCNLT 451 Query: 604 SINLLA---HFANNQF-------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 INL+ A F D++ LA R R LD+ ID + IE + N Sbjct: 452 HINLVKFARECAGKTFEEKLACIDWEGLAEAARLGTRFLDDAIDRSYTGIEVIDEMNRAT 511 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R GLG+MGF L L IPYAS EAVE+ + M +I +A+ S ELA+ERG + F+ Sbjct: 512 RKNGLGIMGFAELLIKLGIPYASWEAVELINRIMAWIYVNALDESAELARERGPFKFFEK 571 Query: 714 SLWDQGVFPI----DSI---------GLLAEVRD------ELAMNRTS--RLPWDELKKR 752 S + +G P+ D + E+R+ E+ M R + L+++ Sbjct: 572 SAYARGEIPVLKFQDYVWGRWERVKGAFPPELREAGDRLREITMRTREWLRPRLEALREK 631 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 VK G+RNS ++IAPT + + G + ++P + ++++ G V L+ Sbjct: 632 VKG-GVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFIRNVTVGTLIEYYWPAVEWLRA 690 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--A 870 R LW + ++ G + + +P+++K + ATA EI +W + + Q+W+DQ + Sbjct: 691 RGLWTPQVRKTVE-ETGMLKDAP-LPEEVKHLFATAMEIGWLWHVLMQASAQQWVDQGIS 748 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923 +++N+ + P + + + + AW +G+K T Y +S+S + + + KL Sbjct: 749 KTINMPANAPK-EDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKL 802 >gi|291618544|ref|YP_003521286.1| NrdE [Pantoea ananatis LMG 20103] gi|291153574|gb|ADD78158.1| NrdE [Pantoea ananatis LMG 20103] Length = 712 Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 185/663 (27%), Positives = 303/663 (45%), Gaps = 77/663 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF+ V +D FAF+ +LG Y Y L +G R +E + VA+ LA Sbjct: 79 DFNFVCGLHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFEQRACMVALTLAQG 138 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + +E + S F +TPT NSG + +L SCFL + D++ I A+ Sbjct: 139 DETLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIEDNMESIGRAVNSA 195 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 196 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 255 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 +L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 256 WLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQPMALFSP---YDV 312 Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +YG+ F I+ + E AD K + I ++ + + FE+G+P+I ++D Sbjct: 313 ERIYGQAFGDISISEKYAEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 370 Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615 N +P G ++ SNLC+EI +NS+SE + CNLGS+N +AH Sbjct: 371 NRDNPI--AGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGSLN-IAH----A 423 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D LA T+ TA+R L V D+ + ++ + N AIGLG M L I Y Sbjct: 424 MDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGITY 483 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------- 726 SPEA++ + ++++A+ AS +LA+ER + F S + G + + Sbjct: 484 GSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQSDWQPR 543 Query: 727 -GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +A + + ++ W L++ V G+ N N AI PT +I+ I + SI P Sbjct: 544 TARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHATSSIHPI 603 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + K +G F+ N+ N+E + Sbjct: 604 VSRIEIRKEGKTGRVYYPAPFMTND-----------------------NLE--------L 632 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+ Sbjct: 633 YQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692 Query: 904 RSR 906 R R Sbjct: 693 RLR 695 >gi|3077613|emb|CAA70765.1| ribonucleotide reductase subunit R1E [Corynebacterium ammoniagenes] Length = 720 Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 183/647 (28%), Positives = 288/647 (44%), Gaps = 68/647 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y F F+ +LG Y Y L R + + F RV+M A + Sbjct: 98 YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 156 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S F +TPT N+G + +L SCFL + D++ I A+ + L+K GG+ Sbjct: 157 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 216 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I +S G+IP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 217 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 276 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE 523 ++ D++ R ++ IPD+ +N LFSP D+ +YGK F +I+ Sbjct: 277 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVS 333 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 ++ + +KI+A ++ + + FE+G+P+I F+D N +P + G ++ SN Sbjct: 334 DHYAEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSN 392 Query: 584 LCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS S EE CNLGS+N+ D T+ A+R Sbjct: 393 LCSEILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDSPDFGGTVEAAIRG 447 Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D ++ + N AIGLG M L HI Y S E ++ + + Sbjct: 448 LTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAV 507 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRL 744 + A+ AS ++A+ERG +S FK S + GVF P + +V+ EL N T Sbjct: 508 LYAALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVK-ELFANSTIHT 566 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W +LK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 567 PSAEDWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 619 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 E I + Y + N D+L A+E+ +I++ Sbjct: 620 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEVGHEKIIDTY 656 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 657 AVATKYVDQGLSLTLFFRDTAATRDINRAQIFAWRKGIKTLYYIRLR 703 >gi|149277656|ref|ZP_01883796.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp. BAL39] gi|149231344|gb|EDM36723.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp. BAL39] Length = 696 Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 168/608 (27%), Positives = 281/608 (46%), Gaps = 61/608 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382 VA+ L L + + A + LL + + +TPT NSG R +L SCFL + D+L G Sbjct: 119 VAVALFLGQGNVD-HAKAYAELLINQEYQPATPTFLNSGKKRSGELVSCFLDEIGDNLNG 177 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+ GG+ + + +RG G I ++ GV+P +K+ DT NQ G Sbjct: 178 IGYAIDSAMKLSSIGGGVSFNISKIRGRGESIKDVENRAGGVLPIMKILEDTFSYANQLG 237 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R GA YL +H D+EEFLD +K D++ R ++ +PD FM+ ++ LF Sbjct: 238 QRPGAGAVYLNVFHTDIEEFLDCKKINVDEKVRIKSLSIGVIVPDKFMELAEKDEACYLF 297 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P V + Y E ++ E YE +K +KI+A L K+ E+G+P++ Sbjct: 298 QPHTVYKAYGKYLDEMDMD-EMYEELLTNSAVKK-KKINARHLMVKIAQTQKESGYPYLF 355 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLAH 610 FK N + +G V SNLCTEI S + + CNLGS+N+ Sbjct: 356 FKGNANKGHALKDIGNVKFSNLCTEIMQVSEVSDIEIYGREDQIKYGISCNLGSLNIATV 415 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N ++ + TA+R L V D+ N + +K+N ++GLG M L Sbjct: 416 MENK-----RIKEAVTTAMRSLTVVSDLTNIAMVPSVQKANKELHSVGLGAMNLHGFLTK 470 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL 728 I Y S EA++ + ++F++I +S+E+A+E+ + F+ S + G + I Sbjct: 471 NFIMYESKEALDFCNVFFMMVNFYSIQSSMEIAKEKKETFVGFEKSEYANGNYFSQYIAK 530 Query: 729 -LAEVRDELA-----MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + V D++A M + W +L VK G+ ++ +AIAP + + I + S+ Sbjct: 531 DILPVNDKIAKLFEGMAIPTAEDWKQLMANVKEFGLYHAYRLAIAPNQSTSYIMNATASV 590 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P +V+ ++ R+ D + Y D +D Sbjct: 591 MP---------------------VVDVIEVREYGDSTTYYPMPYLD----------NDNY 619 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901 + +A+++D ++ S QK +DQ S L+ + + + + + Y A MGLK+ Y Sbjct: 620 FFYKSAYDMDQKNVLRLISVIQKHVDQGISTILHTNTKDNTRDIAKYYIYAHKMGLKSLY 679 Query: 902 YLRSRSAT 909 Y R+R A+ Sbjct: 680 YTRTRKAS 687 >gi|25028979|ref|NP_739033.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium efficiens YS-314] gi|23494266|dbj|BAC19233.1| ribonucleotide reductase alpha chain [Corynebacterium efficiens YS-314] Length = 721 Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 192/679 (28%), Positives = 307/679 (45%), Gaps = 76/679 (11%) Query: 271 ESMMDFDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM- 326 E + +D Y+ + K Y F F+ +LG Y Y L R + + F RV M Sbjct: 82 EVLDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCMV 140 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFG 385 L L + ++E A + + + F +TPT NSG + + SCFL + D++ I Sbjct: 141 ALTLADGDRET-ANALVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGR 199 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+ Sbjct: 200 AINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQ 259 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP Sbjct: 260 GAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP- 318 Query: 506 EVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D+ +YGK F +I+ E Y D I+ KI+A ++ + + FE+G+P+I F Sbjct: 319 --YDVERIYGKPFADISVTELYNEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMF 375 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHF 611 +D N +P + G V SNLC+EI S+ E CNLGS+N+ Sbjct: 376 EDTVNEANPIE--GRVTHSNLCSEILQVSTPSTYHEDLSYDEVGEDISCNLGSLNIAM-- 431 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + TI TA+R L V + + ++ +K N AIGLG M L Sbjct: 432 ---AMDSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYLGRE 488 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PID 724 HI Y S E ++ + + + + AS ++A+ERG +++F+ S + GV+ P + Sbjct: 489 HIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFENSDYASGVYFDRFDPAE 548 Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +V+ EL N T P W +LK V G+ N A+ PT +I+ I + Sbjct: 549 FAPKTDKVK-ELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQAVPPTGSISYINNSTS 607 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI P + ++ E I + Y + N D+ Sbjct: 608 SIHPIASKIEIRK------------------------EGKIGRVYYPAPHMDN-----DN 638 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 L+ A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT Sbjct: 639 LEYFQ-DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKT 697 Query: 900 TYYLRSRSATSVEKSTLKG 918 YY+R R ++E + + G Sbjct: 698 LYYIRLRQ-VALEGTEIDG 715 >gi|197249723|ref|YP_002147707.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213426|gb|ACH50823.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 714 Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 191/659 (28%), Positives = 303/659 (45%), Gaps = 78/659 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 97 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAKMALFSP---YDVQRRYGKPFGDIAISER 330 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y S EA++ + I Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSSEALDFTNLYFYTI 501 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+K+ YY+R R ++E + ++G Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708 >gi|190893562|ref|YP_001980104.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium etli CIAT 652] gi|190698841|gb|ACE92926.1| ribonucleoside-diphosphate reductase protein, alpha subunit [Rhizobium etli CIAT 652] Length = 693 Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 190/666 (28%), Positives = 301/666 (45%), Gaps = 85/666 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 61 FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 120 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 121 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 177 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 178 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 237 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ Sbjct: 238 LNAHHPDIMRFLDTKRENVDEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVE 294 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F EI+ E Y I +KI A ++ + + FE+G+P+I F+D N Sbjct: 295 RVYGVPFTEISVTEKYREMVGDARISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNR 353 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617 +P G + SNLC+EI S + E CNLGS+N+ A A + D Sbjct: 354 ANPID--GRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDSAD 409 Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + K TI T++R L V D++ ++ +K N AIGLG M L I Y S Sbjct: 410 FGK---TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGS 466 Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDS 725 E V+ + +++HAI AS LA ERG ++ F+ S + G + P + Sbjct: 467 EEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYACGDYFDKYTEQEWKP--A 524 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + D+ ++ ++ W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 525 TEKVQALFDKSGIHIPTQDDWAELKTAVMASGLYNQNLQAVPPTGSISYINHSTSSIHP- 583 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDL 841 +V++++ R +G IG + + +D Sbjct: 584 --------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDN 610 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900 + A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 611 LDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTI 670 Query: 901 YYLRSR 906 YY+R R Sbjct: 671 YYIRLR 676 >gi|209551074|ref|YP_002282991.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536830|gb|ACI56765.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 734 Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 188/663 (28%), Positives = 298/663 (44%), Gaps = 79/663 (11%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 102 FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALSLARGD 161 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S +TPT N+G + +L SCFL V D++ I ++ Sbjct: 162 ---EALARDMVDEIISGRLQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 218 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R A I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 219 QLSKRGGGVALSLTNIREASAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 278 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP +V ++ Sbjct: 279 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDISFELARNNEDMYLFSPYDVERIY 338 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + + E AD K +KI A ++ + + FE+G+P+I F+D N + Sbjct: 339 GVPFTEISVTEKYREMVADARISK--KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 396 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + E CNLGS+N+ A A + D+ Sbjct: 397 PI--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDSADFG 452 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K TI T++R L V D++ ++ +K N AIGLG M L I Y S E Sbjct: 453 K---TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 509 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG------LLAE 731 V+ + +++HAI AS LA ERG ++ F+ S + G + D + Sbjct: 510 GVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYASGEY-FDKYTEQEWQPATEK 568 Query: 732 VR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 VR D + ++ W LK V T G+ N N A+ PT +I+ I + SI P Sbjct: 569 VRALFDNAGIPVPTQEDWLALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP---- 624 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844 +V++++ R +G IG + + +D Sbjct: 625 -----------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLDY 654 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+ Sbjct: 655 YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYI 714 Query: 904 RSR 906 R R Sbjct: 715 RLR 717 >gi|226305839|ref|YP_002765799.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus erythropolis PR4] gi|226184956|dbj|BAH33060.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus erythropolis PR4] Length = 727 Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 186/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 D Y + F F +LG Y Y L +G R + F RV M E AVE Sbjct: 103 DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLAAGNEDLAVE 160 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 161 LVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGV 220 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 T VR GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 221 ALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIY 280 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + + Sbjct: 281 RFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINV 340 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 + + YE D+ K KI A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 341 SEKYYEMVDDKRIRK--SKIKAREFFQTVAELQFESGYPYIMFEDTVNRANPIE--GKIT 396 Query: 581 SSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI S+ + CNLGS+N+ D A TI + Sbjct: 397 HSNLCSEILQVSTPSLFNDDLSYSKVGKDISCNLGSLNIA-----KTMDSPDFAKTIEVS 451 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + +++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 452 IRGLTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSVEGIDFTNIYF 511 Query: 688 EFISFHAISASVELAQERGAYSSFKG---SLWDQGVF-----------PIDSI-GLLAEV 732 + FHA+ AS ++A ERG+Y FKG S + G F D + GL A+ Sbjct: 512 YTVLFHALRASNKIAIERGSY--FKGFPESKYASGEFFDKYTDQVWEPATDKVRGLFADA 569 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV- 791 + ++ ++ W ELK V+ G+ N N A+ PT +I+ I + SI P + + Sbjct: 570 K----LHIPTQDDWRELKASVQKHGIYNQNLQAVPPTGSISYINYSTSSIHPVASKIEIR 625 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K G +L N+ N+E D A+EI Sbjct: 626 KEGKIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEI 654 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 655 GYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MA 713 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 714 LEGTEVEG 721 >gi|163842201|ref|YP_001626606.1| ribonucleotide-diphosphate reductase subunit alpha [Renibacterium salmoninarum ATCC 33209] gi|162955677|gb|ABY25192.1| ribonucleoside-diphosphate reductase alpha chain [Renibacterium salmoninarum ATCC 33209] Length = 706 Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 179/661 (27%), Positives = 297/661 (44%), Gaps = 76/661 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y++ F FE +LG Y Y L +G R +E + VA+ LA E A++ Sbjct: 87 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLA---RGNEDLALKLV 143 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT N+G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 144 DEIIDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 203 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 204 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDINRF 263 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ +PD+ + ++ LFSP +V ++ + + + Sbjct: 264 LDTKRENADEKIRIKTLSLGVVVPDITFELAKRDEDMYLFSPYDVEKVYGIPFSDISVT- 322 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y D IK KI A ++ + + FE+G+P+I F+D N +P + G + S Sbjct: 323 EKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GKIIMS 379 Query: 583 NLCTEITLNS---------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI S S ET CNLGS+N+ D +TI T++R Sbjct: 380 NLCSEILQVSKPTVYNDDLSYAETGKDISCNLGSLNIA-----RTMDSPDFGNTIETSIR 434 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D+ + ++ K N RAIGLG M L + Y S E ++ + Sbjct: 435 ALSAVSDMSDIRSVPSIAKGNRASRAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYT 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNRTS 742 + +HA+ AS LA E G + F+ S + G F + + VR+ A ++ + Sbjct: 495 VVYHALRASNLLAIETGETFGGFENSKYASGEFFDKYTDQERLPQTERVRELFANVHIPT 554 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W LK + G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 555 QDDWRSLKASIMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRK--------- 605 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIE 858 +G IG + + +D + + A+EI +I+ Sbjct: 606 -------------------------EGKIGRVYYPAPYLTNDNLEFYQDAYEIGYEKIID 640 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + + +DQ SL L+ D S + ++ AW G+KT YY+R R ++E + ++ Sbjct: 641 TYAAATQHVDQGLSLTLFFKDTASTRDINKAQIYAWRKGIKTVYYIRLRQ-LALEGTEVE 699 Query: 918 G 918 G Sbjct: 700 G 700 >gi|283832327|ref|ZP_06352068.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] gi|291071974|gb|EFE10083.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] Length = 653 Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 182/649 (28%), Positives = 281/649 (43%), Gaps = 75/649 (11%) Query: 287 YERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVE 341 ++RD F Y ++ L +Y + + G E Q ++ VA L +E R Sbjct: 29 HDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLQYVKR 87 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 FY+ +S+F TP + SG R P Q SSC L D L I G Sbjct: 88 FYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAG 145 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G + +R LG+ I G G IPF K + +QGG R GA + WH++V Sbjct: 146 IGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEV 205 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GK 516 E L L+ N G + R M+ I L R+ + TLFSP +V L+D + Sbjct: 206 ESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQD 265 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQH 575 EFE Y YE + +++ AV L+ M+ TG +I D CN SP Sbjct: 266 EFERLYTQYENDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPV 321 Query: 576 VGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 V V SNLC EI L N + E A+C L + NL A + D+L Sbjct: 322 VAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLSAFNLGAINS-----LDELEELAVL 376 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR LD ++D + I AK+ R +G+G++ + L Y+ A + ++ Sbjct: 377 AVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYWLAKNGKRYSDGSANNLTHKTF 436 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM-NRTSRLPW 746 E I ++ + AS ELA E+GA F + + QG+ PID+ +D A+ N L W Sbjct: 437 EAIQYYLLKASNELAIEQGACPWFNETTYSQGILPIDTYK-----KDLDAISNEPLHLDW 491 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 + L++ +KT G+RNS A+ P+ T + I + I+P + +K++ G ++ + Sbjct: 492 EALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVV 548 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + D ++ ++ ++ +DG ++ QK+ Sbjct: 549 PDYEHLHDAYE--LLWEMPSNDG--------------------------YLQLVGIMQKF 580 Query: 867 IDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908 IDQ+ S N D PSGK +L A+ G+KT YY +R Sbjct: 581 IDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 629 >gi|259508043|ref|ZP_05750943.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium efficiens YS-314] gi|259164384|gb|EEW48938.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium efficiens YS-314] Length = 701 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 192/679 (28%), Positives = 307/679 (45%), Gaps = 76/679 (11%) Query: 271 ESMMDFDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM- 326 E + +D Y+ + K Y F F+ +LG Y Y L R + + F RV M Sbjct: 62 EVLDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCMV 120 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFG 385 L L + ++E A + + + F +TPT NSG + + SCFL + D++ I Sbjct: 121 ALTLADGDRET-ANALVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGR 179 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+ Sbjct: 180 AINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQ 239 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP Sbjct: 240 GAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP- 298 Query: 506 EVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D+ +YGK F +I+ E Y D I+ KI+A ++ + + FE+G+P+I F Sbjct: 299 --YDVERIYGKPFADISVTELYNEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMF 355 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHF 611 +D N +P + G V SNLC+EI S+ E CNLGS+N+ Sbjct: 356 EDTVNEANPIE--GRVTHSNLCSEILQVSTPSTYHEDLSYDEVGEDISCNLGSLNIAM-- 411 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + TI TA+R L V + + ++ +K N AIGLG M L Sbjct: 412 ---AMDSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYLGRE 468 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PID 724 HI Y S E ++ + + + + AS ++A+ERG +++F+ S + GV+ P + Sbjct: 469 HIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFENSDYASGVYFDRFDPAE 528 Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +V+ EL N T P W +LK V G+ N A+ PT +I+ I + Sbjct: 529 FAPKTDKVK-ELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQAVPPTGSISYINNSTS 587 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI P + ++ E I + Y + N D+ Sbjct: 588 SIHPIASKIEIRK------------------------EGKIGRVYYPAPHMDN-----DN 618 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 L+ A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT Sbjct: 619 LEYFQ-DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKT 677 Query: 900 TYYLRSRSATSVEKSTLKG 918 YY+R R ++E + + G Sbjct: 678 LYYIRLRQ-VALEGTEIDG 695 >gi|325675840|ref|ZP_08155524.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus equi ATCC 33707] gi|325553811|gb|EGD23489.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus equi ATCC 33707] Length = 728 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 186/663 (28%), Positives = 295/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + VA+ LA + E A Sbjct: 104 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---ETLAT 160 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 161 ELVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 220 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T VR GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 221 VALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 280 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + Sbjct: 281 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADIN 340 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 341 VT-EKYHEMVDDKRIRK-SKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--AGKI 396 Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI T N + V CNLGS+N+ D A TI T Sbjct: 397 THSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIAL-----TMDSPDFAKTIET 451 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 ++R L V D + +++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 452 SIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIY 511 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HAI AS +A+ERG + F S + G + + E + E L + Sbjct: 512 FYSVVYHAIRASNLIAKERGTHFKGFPESDYASGKYFDKYTDQVWEPKTEKVRQLFADAG 571 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 +P W ELK V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 572 IHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKI 631 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G +L N+ N+E D A+EI + Sbjct: 632 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 660 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 661 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQ-MALEGTE 719 Query: 916 LKG 918 ++G Sbjct: 720 VEG 722 >gi|120402409|ref|YP_952238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium vanbaalenii PYR-1] gi|119955227|gb|ABM12232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium vanbaalenii PYR-1] Length = 698 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 175/668 (26%), Positives = 278/668 (41%), Gaps = 93/668 (13%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D Y+ A L RD + +L +RY Sbjct: 71 IQDYVEARLGEAGLDDVARAYIIYRNRHAELRSAKALLGVRDELKLSLAAVTVLRERYLQ 130 Query: 308 HI-NGSRIEMPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNS 361 H G E R A +A E + A +F L F+ ++PTL N+ Sbjct: 131 HDERGHPTESTGEMMDRAARYVAAAEDRYLPGSSARWADQFATSLRRLEFLPNSPTLMNA 190 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 G+ LS C + V D L IF L A + + GG G ++ +R G I T G++ Sbjct: 191 GSDLGLLSGCVVLPVDDSLRSIFSTLGHAAEVQRCGGGTGFAFSRLRPAGDRIASTGGRA 250 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA L+ H D++EF+ + + + R N Sbjct: 251 SGPVSFLELFDTAARVVSLGGRRRGACMGVLDVSHPDIQEFVTAKTQSPE---RLSHFNL 307 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D FM+ V E D+H L + K+S Sbjct: 308 SVGVSDSFMRAV------------ERGDVHRLVNPRTG---------------RTVAKVS 340 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 AV L+ + G P + F D N +P +G + ++N C E+ L + CN Sbjct: 341 AVELFDVICESAHACGDPGLVFLDTVNRANPVPRLGRIEATNPCGEVPLLPNES----CN 396 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NL + + D+ +L AVR LD+VID++ + ++ + R IGLG+M Sbjct: 397 LGSLNLARMVTDGRIDWCRLRDVTALAVRFLDDVIDVSRYPFDELDAAGRATRKIGLGVM 456 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L L IPY S +AV +A M + A S +LA ERG + ++ Sbjct: 457 GLAEVLASLGIPYDSDDAVRLAGRIMGRVQRVAHETSEQLAAERGPFPAYP--------- 507 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 SRL T RN+ ++APT TI+ I G + Sbjct: 508 -------------------DSRL----------TRPRRNAQLTSVAPTGTISLIAGTTAG 538 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + Y ++ + VN ++R + + +I+++ G G +P D+ Sbjct: 539 IEPMFAIAYTRAVVGRHLLEVNPCFDRMARRRGFYTDELITEIARSGGVRGYRGDLPADV 598 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK-- 898 + TA EI P W + + Q+ +D A S + L E + + IY AW +K Sbjct: 599 RAAFPTAAEISPEWHLRMQAAVQRHVDAAVSKTVNLPEAATADDVRAIYLSAWKAKVKGI 658 Query: 899 TTYYLRSR 906 T Y SR Sbjct: 659 TVYRYGSR 666 Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV +R+G + FD +I A+ +A A E A + TV + Sbjct: 15 QVRRRDGTLVPFDIGRIEAAVSRA--ACEVACADPDM----------PGTVAVTVADALG 62 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 + I +E IQD VE L ++G + R Y++YR +++R+A++ Sbjct: 63 SAIAPVEKIQDYVEARLGEAGLDDVARAYIIYRNRHAELRSAKA 106 >gi|16761589|ref|NP_457206.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143069|ref|NP_806411.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25328484|pir||AG0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503890|emb|CAD05918.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29138702|gb|AAO70271.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 714 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 193/677 (28%), Positives = 306/677 (45%), Gaps = 91/677 (13%) Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329 +Y+R F F +LG Y Y L +G R +E + VA+ LA Sbjct: 79 RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 138 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388 + E A + + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 139 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 312 Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK F +IA E Y E AD K + I+A ++ + + FE+G+ +I F+D Sbjct: 313 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYLYIMFED 370 Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613 N +P G ++ SNLC+EI +NS+S CNLGS+N +AH Sbjct: 371 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 425 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D + T+ TA+R L V D+ + ++ N AIGLG M L I Sbjct: 426 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 483 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG---- 727 Y SPEA++ + I++HA+ S+ LA+ERG ++ F S + G + + Sbjct: 484 AYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 543 Query: 728 -LLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + SI Sbjct: 544 PKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 603 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K +G F+ NE N++ D Sbjct: 604 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 637 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A++I P +I++ + + +DQ SL L+ D + + ++ AW G+K+ Y Sbjct: 638 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 692 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 693 YIRLRQ-LALESTEIEG 708 >gi|260583951|ref|ZP_05851699.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158577|gb|EEW93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella elegans ATCC 700633] Length = 725 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 175/660 (26%), Positives = 290/660 (43%), Gaps = 84/660 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y++ F F ++ Y +Y L N G R + F R+ E+ A + Sbjct: 91 YKKKFRFRSFMSAFKFYKQYALKTNDGER--YLERFEDRIVFNALFLADGDEQLARDLAE 148 Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TPT N+G R +L SCFL DD+ I + L++ GG+G Sbjct: 149 EMIHQRYQPATPTFLNAGRKRRGELVSCFLIQTTDDMNSIGRTINSALQLSRIGGGVGVS 208 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + VR G I S GV+P +K+ D+ NQ G+R GA YL +H D+ FL Sbjct: 209 LSNVRAAGDPIKKIENASSGVVPIMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFL 268 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA-- 521 +K D++ R ++ +PD F + + + LFSP D+ +YG F Sbjct: 269 STKKENADEKIRVKTLSLGLVVPDKFYELIKNDDMMYLFSP---YDVERIYGVPFSYVDI 325 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 + YE + EI+ K+ A L +++ + E+G+P+I D N +P G + Sbjct: 326 TKEYENMVNNSEIRK-SKLRARDLEQEISKLQQESGYPYIVNIDTVNKANPID--GKIIM 382 Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N++ E + CNLGS N++ + F+ +I AV Sbjct: 383 SNLCSEILQVQSPSVINNAQEYEVLGTDISCNLGSTNIVNLMQSPDFE-----RSIEVAV 437 Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D + + K N IGLG MG + L + Y SPE++E+ D Sbjct: 438 RALTFVTDHSSIDAVPTVKNGNQKAHTIGLGAMGLHTFFALNQMEYGSPESIEVTDLYFR 497 Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-- 745 ++F+ + AS ++A+ERG + F+ S + G + E++ E LP Sbjct: 498 LLNFYTLKASHKIAKERGVTFDGFEKSAYASGTYFDAYTESDVEIKSEKVKEIFENLPIP 557 Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W +LK V G+ + N +AIAPT +I+ + S S+ P + Sbjct: 558 TAEDWKQLKADVMADGLYHQNRLAIAPTGSISYVNETSASLHPITR-------------- 603 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 L+ E +++ + Y+ + E +P + +A++ID +I+ + Sbjct: 604 ----LIEERQEKK-------TGKTYYPAPFLSNETLP-----YYKSAYDIDMRKVIDVYA 647 Query: 862 RRQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 QK IDQ SL L++ + P G + L+ + AW G+K+ YY+R+ Sbjct: 648 AAQKHIDQGMSLTLFMRSELPEGLYEWKNGRTRKMTTRDLNILRNYAWNKGIKSIYYVRT 707 >gi|306845615|ref|ZP_07478184.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO1] gi|306273936|gb|EFM55763.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO1] Length = 738 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 299/677 (44%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 ---EQLARDLVDEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRTN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P + G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PIE--GRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 717 YIRLRQ-MALEGTQVQG 732 >gi|289705576|ref|ZP_06501968.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus luteus SK58] gi|289557805|gb|EFD51104.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus luteus SK58] Length = 725 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 190/677 (28%), Positives = 296/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ + D Y+ F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 93 FEFIRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGD 152 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + F +TPT NSG + +L SCFL + D++ I + Sbjct: 153 QE---LATHLVDEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSAL 209 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA Y Sbjct: 210 QLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 269 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 270 LNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDVE 326 Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F EI+ E Y D IK KI+A ++ + + FE+G+P++ F+D N Sbjct: 327 RVYGVPFSEISVTEKYYEMVDDARIKK-TKINAREFFQTIAEIQFESGYPYVVFEDTVNA 385 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617 +P + G + SNLC+EI S + E CNLGS+N+ D Sbjct: 386 ANPIK--GRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMD 438 Query: 618 YDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++ TA+R L V + + ++ K N AIGLG M L + Y S Sbjct: 439 SPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLHGYLARERVHYGS 498 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDS 725 E ++ + + FHA+ AS +A E G + F+ S + G F P Sbjct: 499 EEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATE 558 Query: 726 --IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 GL AE L ++ W ELK V G+ N N A+ PT +I+ I + SI Sbjct: 559 RVAGLFAEAGIALP----TQDDWRELKASVMEHGIFNRNLQAVPPTGSISYINNSTSSIH 614 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +L NE +L+Y++ Sbjct: 615 PVASKIEIRKEGKLGRVYYPAPYLTNE-------------NLEYYE-------------- 647 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI +I++ + + +DQ SL L+ D + + L+ AW G+KT Y Sbjct: 648 ----DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWTKGIKTIY 703 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 704 YIRLRQ-LALEGTEVEG 719 >gi|260662381|ref|ZP_05863276.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] gi|260553072|gb|EEX26015.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] Length = 721 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 184/661 (27%), Positives = 300/661 (45%), Gaps = 94/661 (14%) Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F F+ ++G Y +Y + N + + VA L L +++ A + + L + Sbjct: 91 FRFKSFMGAYKFYTQYAMKTNDGKRFLEDYNDRVVANALYLARGDQQ-LAKDLTDELINQ 149 Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G R Q+ SCFL V D + I AL L++ GG+G + + +R Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I S GV+P +K+ D NQ G+R GA YL +H D+ FL+ +K Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522 D++ R ++ +PD + + + NA LFSP +V +E + + Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVE-------RELKTPFSYVDLT 322 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + Y+R IK ISA L +K+ + E+G+P+I D N +P G + S Sbjct: 323 KEYDRLVANPRIKK-TAISARELEQKISRLQQESGYPYILNIDHANRDNPV--AGKIIMS 379 Query: 583 NLCTEI-------TLNSS-SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI TL S S ET CNLGS N+ +N + AVR Sbjct: 380 NLCSEILQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVR 434 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L NV D N + K N + IGLG MG +AL I Y SPEA+E + Sbjct: 435 ALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLA 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS----RL 744 ++++++ AS ++A+ER ++ FK S + G + D + ++ E NR + L Sbjct: 495 LNYYSLLASHQIAKERDETFAGFKDSRYADGSYFDDYVTKPFTLKFE--KNRAAFSGVHL 552 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W LK+ V+T G+ + N +A+AP +I+ + S S+ P Sbjct: 553 PTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTP---------------- 596 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + ++QR E + L Y + N E +P + A+++D +I++ Sbjct: 597 -----ITQLVEQRQ---ENKVGALFYPAPYLSN-ETLP-----YYTPAYDLDQRKIIDTY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKTTYYLR 904 + QK +DQ SL L++ D+P + + L+ + AW G+K+ YY+R Sbjct: 643 AVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIR 702 Query: 905 S 905 + Sbjct: 703 T 703 >gi|227548645|ref|ZP_03978694.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] gi|227079259|gb|EEI17222.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] Length = 721 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 183/671 (27%), Positives = 306/671 (45%), Gaps = 69/671 (10%) Query: 276 FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 +D ++ + K Y F F+ +LG Y Y L R + + F RV+M Sbjct: 86 YDWQFVKDTFKRAYSYKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLA 144 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENA 391 + E+ A + + + F +TPT N+G + +L SCFL + D++ I A+ + Sbjct: 145 SGNEETASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSL 204 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA Y Sbjct: 205 QLSKRGGGVALLLSNIREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 264 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ Sbjct: 265 LNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNDDMYLFSPYDVERVY 324 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 L + + E YE + I+ KI+A ++ + + FE+G+P+I F+D N + Sbjct: 325 GLPFADISVT-EKYEEMVEDPRIRK-TKINARHFFQTIAEIQFESGYPYIMFEDTANRAN 382 Query: 572 PQQHVGVVHSSNLCTEI-TLNSSS---EETAV--------CNLGSINLLAHFANNQFDYD 619 P + G ++ SNLC+EI +NS S E+ + CNLGS+N+ D D Sbjct: 383 PVK-TGRINMSNLCSEILQVNSPSVLNEDLSYAEVGHDISCNLGSLNIA-----KTMDSD 436 Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 + T+ TA+R L V D + ++ + N+ AIGLG M L HI Y S E Sbjct: 437 NFSRTVETAIRGLTAVADKTSIESVPPVRDGNNASHAIGLGQMNLHGYLGREHIEYGSEE 496 Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEV 732 ++ + + + AI AS +A E+G ++ F S + G F P D +V Sbjct: 497 GLDFTNAYFAAVMYEAIKASHAIAVEKGERFADFDKSEYATGEFFDRYDPADFQPKTDKV 556 Query: 733 RDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + EL + +P W +LK V G+ N A+ PT +I+ I + SI P Sbjct: 557 K-ELFARSSVAVPTAQQWAQLKADVARDGIYNRYLQAVPPTGSISYINNSTSSIHPIASK 615 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + ++ E I + Y + N ++L A Sbjct: 616 IEIRK------------------------EGKIGRVYYPAPHMDN-----ENLSYFK-DA 645 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + K++DQ SL L+ D + + ++ AW G+K+ YY+R R Sbjct: 646 YEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTITTRDINRAQIYAWRKGIKSLYYIRLRQ 705 Query: 908 ATSVEKSTLKG 918 ++E + ++G Sbjct: 706 -MALEGTEVEG 715 >gi|154149571|ref|YP_001403189.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Methanoregula boonei 6A8] gi|153998123|gb|ABS54546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoregula boonei 6A8] Length = 741 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 167/604 (27%), Positives = 264/604 (43%), Gaps = 95/604 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVA LA E E+ + FY + S F+ ++PTL N+GT QLS+CF VPD + G Sbjct: 29 RVASALADDENERAR----FYEAMISLRFLPNSPTLMNAGTEIGQLSACFTLPVPDTIDG 84 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF A++E A++ K GG G +++ +R G+ + T+G + G I F++V N + QGG Sbjct: 85 IFDAMKEGAIIHKTGGGTGYNFSHIRPEGSPVQSTDGVASGPISFMRVFNAATDVIKQGG 144 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R+GA L WH D+ F+ +K G+ + N + + D FM V Sbjct: 145 RRRGANMGILNVWHPDILAFISAKKKEGE----FSNFNISVMVNDKFMDLVA-------- 192 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 K FE + + GE KI+ +W ++ +++ G P I Sbjct: 193 ------------AKSFETVWLT---KGGTGE-----KITVGQIWNGIVEGIWKNGEPGIL 232 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 F D N +P +G + ++N C E L C LGSINL A FD D L Sbjct: 233 FYDEINRHNPTPQLGEIDTTNPCGEQPLLPYES----CVLGSINLAACVREGAFDEDLLR 288 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T R A R LD VI+ N I + ++ R IGLG+MG A+ +L + Y S + Sbjct: 289 DTSRMATRFLDLVIEKNVFPIPQIAEATRKTRKIGLGVMGVHDAMLMLGLSYDSEKGRAW 348 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + M+ I+ AI S LA++ G + +++GS+W Sbjct: 349 CEWVMKVITETAIEESHRLAEKLGTFPAWQGSIW-------------------------- 382 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801 K +RN+ +APT TI+ + G S I+P + Y + N G F + Sbjct: 383 -----------KDYEVRNAAMTTVAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKVFVI 431 Query: 802 VNSFLVNEL-----------KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VN L +R+ +IS + + GS+ ++ + + + + TA + Sbjct: 432 VNPVFKEALLHTLTGMGYAGDEREKKAGEVISHV-HETGSMQDVAWLSAEFRGLFKTALD 490 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRS 907 I I + QK++ S++ ++ P D AW +GLK R+ S Sbjct: 491 IPWREHILMQACFQKYVH--ASISKTINMPGSATKDDCAEALLMAWKLGLKGITIYRTGS 548 Query: 908 ATSV 911 V Sbjct: 549 REDV 552 >gi|281491478|ref|YP_003353458.1| ribonucleoside-diphosphate reductase subunit alpha [Lactococcus lactis subsp. lactis KF147] gi|281375196|gb|ADA64709.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactococcus lactis subsp. lactis KF147] Length = 722 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 198/720 (27%), Positives = 319/720 (44%), Gaps = 91/720 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288 +E +T +K+ + +E + EE ++A L + +F + L +L K+E Sbjct: 32 KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 F ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148 Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TPT N+G R + SCFL + DD+ I + L+K GG+G + T + Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524 D++ R ++ +PD F + V + LF P V YGK F +I E Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y++ EI+ I++ L +++ + E+G+P+I D N +P GV+ SNL Sbjct: 325 YDKMVANPEIRK-TPINSRELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI LN V CNLGS N+L ++ ++ ++I VR L Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----NEFGTSIEAMVRAL 437 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 + + N T+ +K N AIGLG MG S L I Y S EAVE ++ Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497 Query: 692 FHAISASVELAQERGAYSSFK---------GSLWDQGVFPIDSIGLLAEVRDEL--AMNR 740 ++ + AS +LA E+G SSFK GS +D+ D ++ EL + Sbjct: 498 YYTLVASNKLAVEKG--SSFKNFEKSAYADGSYFDK-YLTHDYFAAVSSKVQELFKGIAV 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W L+ VKT G+ NS MA+AP +I+ I S SI P Sbjct: 555 PTIEDWTALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP---------------- 598 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +++R E + + Y + E IP + +A++ D +I+ Sbjct: 599 -----IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVY 644 Query: 861 SRRQKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ P G + L + A+ G+KT YY+R+ Sbjct: 645 AAATEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|206576590|ref|YP_002236985.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] gi|206565648|gb|ACI07424.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] Length = 713 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 177/621 (28%), Positives = 286/621 (46%), Gaps = 71/621 (11%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA + ++ ++ +E +LS F +TPT N+G + +L SCFL + D++ Sbjct: 132 VALTLAQGDDQQARQLME--EMLSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ + +R GA I +S GV+P +K+ D NQ G Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA +L H D+ FLD R+ D++ R ++ IPD+ + ++A LF Sbjct: 249 ARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308 Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 SP D+ LYGK F + A + Q E R I A L++++ + FE+G+P+I Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609 F+D N +P G + SNLC+EI S+ E CNLGS+N +A Sbjct: 366 MFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGEDISCNLGSLN-IA 422 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A TI TAVR L V D+ + ++ N AIGLG M L Sbjct: 423 H----TMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727 I Y SPE ++ + +++HA+ S+ LA+ERG ++ F+ S + G + + Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSRYASGAYFDKYLQ 538 Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + E +R LP W +L+ V G+ N A+ PT +I+ I + Sbjct: 539 EEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 598 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ N Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D+L ++ A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 629 DNL-ALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707 >gi|290510979|ref|ZP_06550348.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. 1_1_55] gi|289775972|gb|EFD83971.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. 1_1_55] Length = 713 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 177/621 (28%), Positives = 286/621 (46%), Gaps = 71/621 (11%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA + ++ ++ +E +LS F +TPT N+G + +L SCFL + D++ Sbjct: 132 VALTLAQGDDQQARQLME--EMLSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ + +R GA I +S GV+P +K+ D NQ G Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA +L H D+ FLD R+ D++ R ++ IPD+ + ++A LF Sbjct: 249 ARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308 Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 SP D+ LYGK F + A + Q E R I A L++++ + FE+G+P+I Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609 F+D N +P G + SNLC+EI S+ E CNLGS+N +A Sbjct: 366 MFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGEDISCNLGSLN-IA 422 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A TI TAVR L V D+ + ++ N AIGLG M L Sbjct: 423 H----TMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727 I Y SPE ++ + +++HA+ S+ LA+ERG ++ F+ S + G + + Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSRYASGAYFDKYLQ 538 Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + E +R LP W +L+ V G+ N A+ PT +I+ I + Sbjct: 539 EEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 598 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ N Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D+L ++ A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 629 DNL-ALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707 >gi|310722638|ref|YP_003969461.1| aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage phiAS5] gi|306021481|gb|ADM80015.1| aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage phiAS5] Length = 744 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 183/666 (27%), Positives = 293/666 (43%), Gaps = 50/666 (7%) Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL-ETALIFSSRTLI 210 G F +L I+ A G + +S K +L ++ +G+S + E A+ F++ + Sbjct: 8 GITEEFTVGKLFKILSFATEGTR-ISPKEILDGIMPSITEGMSTKRIQEIAIKFAADRIS 66 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 ++ +Y V AR + LR++V P H M + +G L Sbjct: 67 IEQSDYQYVAARLQMYALRKQVYNQF--DPIHLKPHVMDL---------VMDGKYDPELC 115 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGL 328 D + L +K++RDF Y G+ ++Y G E PQ +M VAM L Sbjct: 116 SKWTDEEFEELNAYIKHDRDFNLAYAGVMQFKEKYLAKDRSTGEVFETPQMLYMLVAMCL 175 Query: 329 ALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFG 385 +E T++ ++ FY++ S TP L +G R P Q SSC D+L I Sbjct: 176 HQEEKTDRLQKVKNFYDVTSLGKLSLPTPIL--AGVRTPTRQFSSCVKIECGDELDSINA 233 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 G+G + +R G+ I + G+IPF K + +QGG R Sbjct: 234 TASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQGGVRG 293 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA Y WH++VE+ L L+ N G + R ++ I L ++R+ + TLFSPD Sbjct: 294 GAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKLMLERLKNDDYITLFSPD 353 Query: 506 -EVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 + +L+DLY + F YE E + + ++I A L+ TG + Sbjct: 354 VQKGELYDLYYSDPVKFRELYEMLENEP----FLIKKRIKASELFNLFAQERSGTGRIYP 409 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLGSINLLAHFANNQ 615 F D N +P + + SNLC EI L + + E A+C L + NL A N Sbjct: 410 MFIDNVNSATPYKE--PIRQSNLCIEIALPTYPVHRDGTGEIALCTLAAYNLGAIEGYND 467 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F + R AVR LDN++D + + +A + RA+G+G+ F L + Y+ Sbjct: 468 F-----LNVARAAVRALDNLLDYQEYPVVQALAAKK-RRALGIGVTNFAYFLAKNFVKYS 521 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID--SIGLLAEVR 733 A ++ +ME + F I AS+ELA+ERGA + W G+ PID + + + V Sbjct: 522 DGSANKLVHRTMEMMQFANIVASMELAKERGASEWHHKTKWADGLLPIDWYNKNVDSIVP 581 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 ++L M+ W+ L+ +K GMRN A P + + I + I+P + K Sbjct: 582 NDLKMD------WEWLRGEIKKYGMRNDTLSAFMPCESSSQITNSTNGIEPPRGLVSTKQ 635 Query: 794 NMSGDF 799 + G F Sbjct: 636 SKDGVF 641 >gi|153004250|ref|YP_001378575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. Fw109-5] gi|152027823|gb|ABS25591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. Fw109-5] Length = 593 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 168/616 (27%), Positives = 265/616 (43%), Gaps = 82/616 (13%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFF--MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 L +L RY L G+ +E P A F + A+ A E+++ A F +S+ F+ + Sbjct: 9 LHVLERRYLLRDERGAVVETPGALFRRVARAVAAAEPPAERDRAAERFEARMSALEFLPN 68 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R G + Sbjct: 69 SPTLMNAGRAHGQLAACFVLPVEDDLAAIFDALKWAALIHQSGGGTGFAFSRLRPRGDVV 128 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T+G + G + F++V + + QGG R+GA A L H D+ EF+D +++ G Sbjct: 129 KTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLSAEHPDILEFVDAKRSHG---- 184 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + N + PD + ++ W L P RG I Sbjct: 185 -LENFNLSVAAPDALFRAASRGDPWPLRHP--------------------------RGGI 217 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 R I AL ++ + +G P + F D +P +G + N C E L Sbjct: 218 --VRNIDPRALLARIADSAWASGEPGLVFLDRVEAANPTPDLGHFEAVNPCGEQPLLPFE 275 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 C LGS+NL + + D+D L + +R VR LD+V+D+N + + + +H +R Sbjct: 276 ----ACTLGSVNLACFERSGRVDWDGLGACVRDGVRFLDDVLDVNVWPLPQIAEISHRNR 331 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MG+ L L IPY SP+A+ ADE M F++ A +AS LA+ERGA+ F S Sbjct: 332 KVGLGVMGWADLLVRLGIPYDSPDALAKADEVMGFVTREAHAASEALARERGAFPGFPTS 391 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 P RN+ IAPT T+A Sbjct: 392 ALAHAGRP-----------------------------------RRNATVTTIAPTGTLAL 416 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G S I+P + YV+ + LV E + G + Sbjct: 417 IAGCSSGIEPLFALAYVRRALDDSELREEHPLVAEALRAAG--ADAALAAVRAAGRARGV 474 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--- 891 +P + ++ ATA ++ P + + Q+ D S + L P +D + R Sbjct: 475 PGVPPAVARLFATAHDVAPEAHVRMQAAFQRHTDNGVSKTINL--PRSAAVDDVARAYAL 532 Query: 892 AWLMGLKTTYYLRSRS 907 A+ +G K R S Sbjct: 533 AYELGCKGITVYRDGS 548 >gi|296104352|ref|YP_003614498.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058811|gb|ADF63549.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 714 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 189/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R ++F RV M L L + + E A + + Sbjct: 97 FRFQTFLGAWKYYTSYTLKTFDGKR--YLESFEDRVVMVALTLAQGD-EALAEQLMEEIL 153 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 154 SGRFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ K +NA LFSP D+ +YGK F ++A E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFKLAKENADMALFSP---YDIERIYGKAFGDVAISEL 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + I+A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADDRIRK-KYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+S + CNLGS+N +AH D T+ TAVR L Sbjct: 388 CSEILQVNSASTYDENLDYADIGKDISCNLGSLN-IAH----TMDSPDFGRTVDTAVRGL 442 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ + N AIGLG M L I Y SPE ++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTIT 502 Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP- 745 +HA+ S+ LA+ER ++ F+ S + G + + + + E +R LP Sbjct: 503 WHALHTSMMLARERNQRFAGFEQSRYASGEYFSQYLESDWQPKTEKVRALFARAGIVLPT 562 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801 W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 563 REMWQQLRDDVMRHGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYY 622 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 F+ NE + A+ D A+EI P +I++ + Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGPEKIIDTYA 651 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIRLRQ-LALEGTEIEG 708 >gi|284931053|gb|ADC30991.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. F] Length = 722 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 167/599 (27%), Positives = 271/599 (45%), Gaps = 70/599 (11%) Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 147 SGRFQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTN 206 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G++ GVIP +K+ D+ NQ G+R G AYL H DV FLD + Sbjct: 207 LREFGAPIKNIEGQASGVIPVMKILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSK 266 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524 + D++ R + +PD+ + N LFSP D+ YGK F E Sbjct: 267 RENADEKIRIKSLALGLVVPDITFELAKNNEQMALFSP---YDVQREYGKPFSDIKVTEE 323 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y + IK ISA ++ + + FE+G+P++ F D N R+P + G + SNL Sbjct: 324 YHNMVNNPRIKK-TYISARKFFQTIAELHFESGYPYLLFDDTVNNRNP--NAGRIVMSNL 380 Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +S+S E CNLGS+N+ + + + ++ A++ L Sbjct: 381 CSEIVQSSTSTEYNEDFSIKKLGQDISCNLGSVNIDKMMRSAE----RFEDSVYYAIKSL 436 Query: 633 DNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 D+V N K N + A+GLG M L I Y SPEA+E D ++ Sbjct: 437 DHVSKSANLDCAPSVKNGNANNHALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLA 496 Query: 692 FHAISASVELA-QERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTS 742 ++A AS LA +++ Y++FK S + G + P + +++ E+ N Sbjct: 497 YYAFKASNRLAVEQKQTYANFKTSKYADGSYFDKYTKCDPNTYVIKNPKIK-EIFSNYKI 555 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 ++P W L + +K G+ N++ +AIAPT +I+ + + SI P + V+ Sbjct: 556 KVPTQADWQALTEEIKKTGLANAHLLAIAPTGSISYLSSCTPSIQPVVAPVEVRKEGKIG 615 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 ++ +NE + Y DG A+E+ P I+ Sbjct: 616 RVYSLAYKLNEHNYK-----------YYKDG------------------AYELGPNPYID 646 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 ++ QK +DQA SL L++ D + + L+ Y +A+ + YY+R R E L Sbjct: 647 ICAQAQKHVDQAISLTLFMNDTATTRDLNKAYIRAYKSKCASVYYVRVRQNVLEESENL 705 >gi|312140540|ref|YP_004007876.1| ribonucleoside-diphosphate reductase nrde [Rhodococcus equi 103S] gi|311889879|emb|CBH49196.1| ribonucleoside-diphosphate reductase NrdE [Rhodococcus equi 103S] Length = 701 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 186/663 (28%), Positives = 295/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + VA+ LA + E A Sbjct: 77 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---ETLAT 133 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 134 ELVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 193 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T VR GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 194 VALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + Sbjct: 254 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADIN 313 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 314 VT-EKYHEMVDDKRIRK-SKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--AGKI 369 Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI T N + V CNLGS+N+ D A TI T Sbjct: 370 THSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIAL-----TMDSPDFAKTIET 424 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 ++R L V D + +++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 425 SIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIY 484 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HAI AS +A+ERG + F S + G + + E + E L + Sbjct: 485 FYSVVYHAIRASNLIAKERGTHFKGFPESDYASGKYFDKYTDQVWEPKTEKVRQLFADAG 544 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 +P W ELK V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 545 IHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKI 604 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G +L N+ N+E D A+EI + Sbjct: 605 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 633 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 634 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQ-MALEGTE 692 Query: 916 LKG 918 ++G Sbjct: 693 VEG 695 >gi|213052491|ref|ZP_03345369.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424575|ref|ZP_03357364.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650064|ref|ZP_03380117.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864814|ref|ZP_03386933.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289824436|ref|ZP_06544025.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 705 Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 193/677 (28%), Positives = 306/677 (45%), Gaps = 91/677 (13%) Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329 +Y+R F F +LG Y Y L +G R +E + VA+ LA Sbjct: 70 RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 129 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388 + E A + + + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 130 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 186 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 187 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 246 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 247 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 303 Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D+ YGK F +IA E Y E AD K + I+A ++ + + FE+G+ +I F+D Sbjct: 304 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYLYIMFED 361 Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613 N +P G ++ SNLC+EI +NS+S CNLGS+N +AH Sbjct: 362 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 416 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D + T+ TA+R L V D+ + ++ N AIGLG M L I Sbjct: 417 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 474 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG---- 727 Y SPEA++ + I++HA+ S+ LA+ERG ++ F S + G + + Sbjct: 475 AYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 534 Query: 728 -LLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + SI Sbjct: 535 PKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 594 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K +G F+ NE N++ D Sbjct: 595 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 628 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A++I P +I++ + + +DQ SL L+ D + + ++ AW G+K+ Y Sbjct: 629 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 683 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 684 YIRLRQ-LALESTEIEG 699 >gi|71894416|ref|YP_278524.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma synoviae 53] gi|71851204|gb|AAZ43813.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma synoviae 53] Length = 724 Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 161/588 (27%), Positives = 277/588 (47%), Gaps = 68/588 (11%) Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 150 SGRFQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESIARAVTTSLQLSKRGGGVALSLTN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD + Sbjct: 210 LREFGAPIKQIQGQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLHAHHPDIMTFLDSK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R ++ +P++ + N LFSP +V ++ + + ++ E Y Sbjct: 270 RENADEKIRIKSLSLGIVVPNITFELAKNNEDMALFSPYDVEKVYGVPFSDIKVTEEYYN 329 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + K F + A ++ + + FE+G+P++ F D N R+P + G + SNLC+ Sbjct: 330 MLNNPKIRKTF--VKARKFFQTVAELHFESGYPYLLFDDTVNDRNP--NAGRIVMSNLCS 385 Query: 587 EITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI +SS E CNLGS+N + N D+ K ++ A++ LD+ Sbjct: 386 EIVQSSSLTEYDTDLTVKKLGEDISCNLGSMN-VDKLMNAGSDFGK---SVFYAIKSLDH 441 Query: 635 V---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D++C N +RA+GLG M + + Y SPEA+E + ++ Sbjct: 442 VSRGCDLSC--APSINHGNRNNRALGLGAMNLHGFFAVNEVYYDSPEALEFTNLFFYALA 499 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAMN 739 +HA AS LA+ER Y +FK S + G + + + E+ + + Sbjct: 500 YHAYKASNLLAKERNETYKNFKSSKYATGEYFDKYTKCKSDLYTAKLPKVIELFKKHNVT 559 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +++ W EL + +K G+ NS+ +A+APT +I+ + + S+ P + V+ G Sbjct: 560 LPTQIDWSELVESIKKYGLANSHVLAVAPTGSISYLSSCTPSLQPVVSPVEVRK--EGKL 617 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V S L +L + + Y DG A+E+ P +I+ Sbjct: 618 GRVYS-LAYKLDENNYK--------YYKDG------------------AYELGPNPIIDI 650 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++ QK +DQA SL L++ D+ + + L+ Y +A+ + YY+R R Sbjct: 651 VAQAQKHVDQAISLTLFMNDKATTRDLNKAYIRAFKAKCSSIYYVRIR 698 >gi|228473105|ref|ZP_04057862.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga gingivalis ATCC 33624] gi|228275687|gb|EEK14464.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga gingivalis ATCC 33624] Length = 551 Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 171/594 (28%), Positives = 265/594 (44%), Gaps = 114/594 (19%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A K K + F +++ S+P N GT SCF +PD + GI L Sbjct: 40 AAKRLYKPELQPAFKEMITKGWISFSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLG 99 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 E M K GG + +R G+ + NGKS G + F+K+ + V+QGG R+GA Sbjct: 100 EVIMQTKIGGGTSGYFGELRHRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAF 158 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 AYL+ H D EEFL + K+TG ++ +PD +M+ + + Sbjct: 159 AAYLDIDHPDAEEFLQI-KDTG---YHIQNLFFGVCVPDYWMQEMIEG------------ 202 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 + E++ LW ++L + G P+I F D N Sbjct: 203 ---------------DTEKRK---------------LWARVLESRQQKGLPYIFFTDNVN 232 Query: 569 IRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + PQ + +H+SNLC+EI L SS EE+ +C L S+NL FD K + Sbjct: 233 RKRPQVYKDNNMFIHASNLCSEIMLPSSEEESFICCLSSMNL------ELFDEWKDTKAV 286 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYAS 676 + A+ LD V+ IEK K + + HRA+GLG++G+ S L IP+ S Sbjct: 287 KLAIFFLDAVLS---EFIEKTKGNYYLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFES 343 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + + I A A+ ELA G KG Sbjct: 344 FEATQFNARAFQHIQSEAEKATQELAHIYGEPELLKG----------------------- 380 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795 G RN+ MAIAPT + + I G VS I+P N Y Sbjct: 381 -------------------YGRRNATTMAIAPTTSSSAILGQVSPGIEPFSSNYYKVGLS 421 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G+F N +L L+++ L +E + ++ DGS+ +++ + + K + T EI PM Sbjct: 422 KGNFMRKNKYLTQLLEEKGLNNEDIWRSIRLSDGSVQHLQELTQEEKNVFKTFKEISPME 481 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG--KKLDFIYRQAWLMGLKTTYYLRSRS 907 +I A++RQ++IDQ+QSLNL + P+ + ++ + +AW +G+K+ YY RS+S Sbjct: 482 IITQAAQRQQYIDQSQSLNLNIP-PTMPIRDVNKVLIEAWKLGVKSLYYQRSQS 534 >gi|288933943|ref|YP_003438002.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella variicola At-22] gi|288888672|gb|ADC56990.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella variicola At-22] Length = 713 Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 176/621 (28%), Positives = 286/621 (46%), Gaps = 71/621 (11%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA + ++ ++ +E +LS F +TPT N+G + +L SCFL + D++ Sbjct: 132 VALTLAQGDDQQARQLME--EMLSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ + +R GA I +S GV+P +K+ D NQ G Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA +L H D+ FLD R+ D++ R ++ IPD+ + ++A LF Sbjct: 249 ARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308 Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 SP D+ LYGK F + A + Q E R I A L++++ + FE+G+P+I Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609 F+D N +P G + SNLC+EI S+ E CNLGS+N +A Sbjct: 366 MFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGEDISCNLGSLN-IA 422 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D A TI TAVR L V D+ + ++ N AIGLG M L Sbjct: 423 H----TMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727 I Y SPE ++ + +++HA+ S+ LA+ERG ++ F+ S + G + + Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSRYASGAYFDKYLQ 538 Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + E +R LP W +L+ + G+ N A+ PT +I+ I + Sbjct: 539 EEWQPKTERVRALFARAGIPLPDRESWRQLRDDIMRYGIYNRYLQAVPPTGSISYINHAT 598 Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + + K +G F+ N Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D+L ++ A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+ Sbjct: 629 DNL-ALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687 Query: 898 KTTYYLRSRSATSVEKSTLKG 918 KT YY+R R ++E + ++G Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707 >gi|31544247|ref|NP_852825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. R(low)] gi|5565930|gb|AAD45273.1|AF152114_1 ribonucleoside-diphosphate reductase alpha chain [Mycoplasma gallisepticum] gi|31541091|gb|AAP56393.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. R(low)] gi|284930286|gb|ADC30225.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. R(high)] Length = 722 Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 165/589 (28%), Positives = 269/589 (45%), Gaps = 70/589 (11%) Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 147 SGRFQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTN 206 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G++ GVIP +K+ D+ NQ G+R G AYL H DV FLD + Sbjct: 207 LREFGAPIKNIEGQASGVIPVMKILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSK 266 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524 + D++ R + +PD+ + N LFSP D+ YGK F E Sbjct: 267 RENADEKIRIKSLALGLVVPDITFELAKNNEQMALFSP---YDVQREYGKPFSDIKVTEE 323 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y + IK ISA ++ + + FE+G+P++ F D N R+P + G + SNL Sbjct: 324 YHNMVNNPRIKK-TYISARKFFQTIAELHFESGYPYLLFDDTVNNRNP--NAGRIVMSNL 380 Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +S+S E CNLGS+N+ + + + ++ A++ L Sbjct: 381 CSEIVQSSTSTEYNEDFSIKKLGQDISCNLGSVNIDKMMRSAE----RFEDSVYYAIKSL 436 Query: 633 DNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 D+V N K N + A+GLG M L I Y SPEA+E D ++ Sbjct: 437 DHVSKSANLDCAPSVKNGNANNHALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLA 496 Query: 692 FHAISASVELA-QERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTS 742 ++A AS LA +++ Y++FK S + G + P + +++ E+ N Sbjct: 497 YYAFKASNRLAVEQKQTYANFKTSKYADGSYFDKYTKCDPNTYVIKNPKIK-EIFSNYKI 555 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 ++P W L + +K G+ N++ +AIAPT +I+ + + SI P + V+ Sbjct: 556 KVPTQADWQALTEEIKKTGLANAHLLAIAPTGSISYLSSCTPSIQPVVAPVEVRKEGKIG 615 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 ++ +NE + Y DG A+E+ P I+ Sbjct: 616 RVYSLAYKLNEHNYK-----------YYKDG------------------AYELGPNPYID 646 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++ QK +DQA SL L++ D + + L+ Y +A+ + YY+R R Sbjct: 647 ICAQAQKHVDQAISLTLFMNDTATTRDLNKAYIRAYKSKCASVYYVRVR 695 >gi|145633335|ref|ZP_01789066.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 3655] gi|144986181|gb|EDJ92771.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 3655] Length = 645 Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 177/661 (26%), Positives = 280/661 (42%), Gaps = 76/661 (11%) Query: 289 RDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFY 343 RD F Y ++ L +Y + + G E Q ++ V+ L + KE R FY Sbjct: 28 RDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYLLVSASL-FSKYPKETRLDYVKRFY 86 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 + S+F TP + +G R P Q SSC L D L I G+G Sbjct: 87 DATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATASAIVKYVSQRAGIG 144 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R LG+ I G G IPF K + +QGG R GA Y WH++ E Sbjct: 145 INAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQGGVRGGAATLYYPIWHLEAEN 204 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEF 518 L L+ N G + R M+ + L +R+ + TLFSP +V L++ + +F Sbjct: 205 LLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGEITLFSPSDVPGLYEAFFADQDKF 264 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVG 577 E Y YE+ + R + AV ++ ++ TG +I D CN SP V Sbjct: 265 EELYVKYEQDPTIRK----RTVKAVEIFSLLMQERASTGRIYIQNVDHCNTHSPFDPQVA 320 Query: 578 VVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 V SNLC EI L N + E A+C L + NL + D+L AV Sbjct: 321 PVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNL-----GKIENLDELEELADLAV 375 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R LD ++D + + AK+S+ R++G+G++ + L + Y+ A ++ + E Sbjct: 376 RSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEA 435 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I ++ + AS+ LA+E+GA F + + +G+ PID+ + D L W+ L Sbjct: 436 IQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDT---YKKDLDSLT-QEPLHYDWESL 491 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +K ++ G+RNS A+ P+ T + I + I+P ++ +K++ G V N Sbjct: 492 RKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIKASKDGILKQVVPEYENL 551 Query: 810 LKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + LWD IP + +H QK++D Sbjct: 552 MDNYELLWD-------------------IPSNDGYLHLVGI-------------MQKFVD 579 Query: 869 QAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLKTTYYLRSR-SATSVEKSTLKGVD 920 QA S N D E + + + A+ GLKT YY +R A V++ G Sbjct: 580 QAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQEDLDDGCA 639 Query: 921 G 921 G Sbjct: 640 G 640 >gi|254720035|ref|ZP_05181846.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. 83/13] gi|306839413|ref|ZP_07472227.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. NF 2653] gi|306405536|gb|EFM61801.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. NF 2653] Length = 738 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 298/677 (44%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQILAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P + G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PIE--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 717 YIRLRQ-MALEGTQVQG 732 >gi|319899231|ref|YP_004159324.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella clarridgeiae 73] gi|319403195|emb|CBI76754.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella clarridgeiae 73] Length = 708 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 166/582 (28%), Positives = 262/582 (45%), Gaps = 67/582 (11%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + +L SCFL V D++ I ++ L+K GG+ T +R Sbjct: 151 FQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I +S GV+P +K+ D NQ G R+GA YL H+D+ +FLD ++ Sbjct: 211 AGAPIKKIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKREN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527 D++ R ++ IPD+ + N LFS D+ + GK F +I+ E+Y Sbjct: 271 ADEKVRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRS 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 D +I+ +KISA ++ + + FE+G+P+I F+D N G + SNLCTE Sbjct: 328 FVDNSKIRK-KKISARVFFQTLAEIQFESGYPYILFEDTVN--RANSIAGRISMSNLCTE 384 Query: 588 ITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I S + E CNLGS+N+ +N F T+ AVR L V Sbjct: 385 ILQVSEASELETDLTYRAVGNDISCNLGSMNIAKAMESNDF-----GKTVEIAVRALTAV 439 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D+ N + K N AIGLG M L I Y +PEA++ + +++HA Sbjct: 440 SDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLARERIYYGTPEAIDFTNIYFYTVTYHA 499 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP---- 745 + AS +A+ER + F+ S + G F I + + EL +R +P Sbjct: 500 LRASNLIARERQKMFVGFERSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPSQKD 559 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ELK+ V G+ N A+ PT +I+ I + SI P + ++ Sbjct: 560 WQELKQLVTQYGLYNRYLQAVPPTGSISYINHATSSIHPIASKIEIRK------------ 607 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 E I + Y + N + + A+EI P +I++ + + Sbjct: 608 ------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEKIIDTYAVATQ 649 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ SL L+ D + + ++ AW G+K+ YY+R R Sbjct: 650 HVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLR 691 >gi|307151332|ref|YP_003886716.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp. PCC 7822] gi|306981560|gb|ADN13441.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp. PCC 7822] Length = 1105 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 241/459 (52%), Gaps = 40/459 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K++++ +G+ + N ++ +VE AC+G +DV+ + + + +G++ +++ LI Sbjct: 36 KIQVIKRNGSNAALNVAKIREVVEWACAG-KDVNPIALEAGLTTRLRNGITTREIQDNLI 94 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + +EP++ V R + L ++VL A ++ Y +Y E+ Sbjct: 95 NCALEMCSPEEPDWRYVAGRLHIWSLWKDVLA--------ARGYQ----YGDY-----EQ 137 Query: 263 GVKARLLHESMMDFDLVYLANDLK-------YERDFAFEYLGLQILYDRYFL-HINGSRI 314 VK ++ ++ LVY + +L+ + D ++Y G +L RY L H Sbjct: 138 TVKTKIENKLYDQRILVYSSQELQEAGSWINSDWDTDYDYAGAVLLTSRYLLPH------ 191 Query: 315 EMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E+PQ + A+ LA ET + K A +FY ++ +TP L N + L+SCF Sbjct: 192 ELPQEALLTCALLLASVETPENRLKWARKFYEAIAKRQVSLATPILANLRIPNGSLTSCF 251 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 ++ + D+L IF + A ++K GG+G + + +R G+ + S GVIP++K+ N Sbjct: 252 ISALDDNLESIFSEIANTARISKNGGGVGINVSRIRATGSWVMNKPNASGGVIPWIKILN 311 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTA+AVNQGG+R GAV L+ WH+DV EFL+++ GD RR+ +D+ I D FM+R Sbjct: 312 DTAIAVNQGGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVITDEFMRR 371 Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 V WTL P EV +L +L+G+EFE Y E EI ++++++A L++ Sbjct: 372 VIHKQDWTLVDPYEVRTKFGIELAELWGEEFEKVYAKIEAAILNEEILLYKRVNARELFK 431 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++ ETG P++ FKD N +P +H G + NLC Sbjct: 432 HIMRSQLETGMPYLAFKDTINRANPNKHEGYIPGVNLCV 470 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 153/365 (41%), Gaps = 68/365 (18%) Query: 572 PQQHVGVVHS--SNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 P +H+G+ + + CTE N +E+ CNL S+NL AN + +LA + + Sbjct: 785 PLRHLGMFNGILTGQCTESFSNVKPGQESHCCNLISLNL----AN--LEESELAEACKIS 838 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDN ID+ E AK N+ +R IG+G MG L + Y E + E Sbjct: 839 VRLLDNTIDLTYPPFEAAKHHNNLYRTIGVGCMGLADWLAKRRLSY---EHLTHISHLFE 895 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I + +S+ELA+ERGAY+ F+GS W +G IG ++ + N W + Sbjct: 896 EIGYWCTHSSMELAKERGAYTCFEGSDWSKGQL----IG--SKPVEWFLENAHHPERWAK 949 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L ++ G+RNS+ AIAP + + + G + S+ P Y + G + ++ Sbjct: 950 LAADIQQYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPIAPPYI-- 1007 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + W Y + ++ D K + A A Q+WID Sbjct: 1008 ---KESFW--------FYPEN------KVYDQNKVVKAIAV-------------MQQWID 1037 Query: 869 QAQSLNLYLDEPSGK----------KLDFIYRQ---AWLMGLKTTYYLRSRSATSVEKST 915 S+ L + G K IY AW G K YY+R +V+K Sbjct: 1038 TGISMELLFNLNGGVYFPEDPERFLKAKDIYDTLILAWQEGCKAIYYIR-----TVQKDN 1092 Query: 916 LKGVD 920 K D Sbjct: 1093 FKDTD 1097 >gi|38234437|ref|NP_940204.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium diphtheriae NCTC 13129] gi|38200700|emb|CAE50396.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium diphtheriae] Length = 719 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 189/667 (28%), Positives = 306/667 (45%), Gaps = 86/667 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y F F+ +LG Y Y L +G R +E + VA+ LA E + V+ Sbjct: 98 YAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGSIELARNLVD-- 155 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 156 -EIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 214 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 215 LLSNLRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNF 274 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F +I+ Sbjct: 275 LDTKRENADEKIRIKTLSLGIVIPDITFELAKRNEDMYLFSP---YDVERVYGKPFADIS 331 Query: 522 YENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 E AD E RK I+A + ++ + + FE+G+P+I F+D N +P + G + Sbjct: 332 VT--ELYADMVEDPRIRKTKINARSFFQTIAEIQFESGYPYIMFEDTVNRANPIE--GRI 387 Query: 580 HSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 + SNLC+EI +NS S E CNLGS+N+ + F A T+ T Sbjct: 388 NMSNLCSEILQVNSPSVLNADLTYEHVGEDISCNLGSMNIAMAMDSTDF-----AKTVET 442 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V + + ++ KK N AIGLG M L HI Y S E ++ + Sbjct: 443 AIRGLTAVSEQTSIDSVPSIKKGNDAAHAIGLGQMNLHGYLGREHIFYGSEEGLDFTNAY 502 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR 740 + + + AS ++A ERG + F+ S + G + P D A+V+ EL N Sbjct: 503 FAAVLYQCLRASHKIAAERGQRFEGFETSDYADGSYFDRFDPADFAPKTAKVQ-ELFENS 561 Query: 741 TSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T +P W+ELK+ V G+ N A+ PT +I+ I + SI P + ++ Sbjct: 562 TIVVPTAEDWEELKQLVMKDGLFNRYLQAVPPTGSISYINNSTSSIHPIASRIEIRK--- 618 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852 +G IG + + +D + + A+EI Sbjct: 619 -------------------------------EGKIGRVYYPAPHMDNDNLEYYQDAYEIG 647 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +I++ + K++DQ SL L+ D + + ++ AW G+K+ YY+R R ++ Sbjct: 648 FEKVIDTYAVATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKSLYYIRLRQ-VAL 706 Query: 912 EKSTLKG 918 E + ++G Sbjct: 707 EGTEVEG 713 >gi|313884788|ref|ZP_07818542.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619987|gb|EFR31422.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 725 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 177/661 (26%), Positives = 298/661 (45%), Gaps = 86/661 (13%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y+ F F+ ++G Y++Y L N + + + F R+ A + + Sbjct: 91 YDYKFRFKSFMGAHKFYNQYALKTNDGKRYL-ERFEDRIVFNALYLANGDPDFARKLRDE 149 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L + F +TPT N+G R ++ SCFL + DD+ I ++ L+K GG+G + Sbjct: 150 LITQRFQPATPTFLNAGRKRRGEMVSCFLIEISDDMNAIGRSINSALQLSKRGGGVGINL 209 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I + GV+P +K+ D+ NQ G+R GA YL +H DV FL Sbjct: 210 SNLREEGAPIKKVENAASGVVPVMKLFEDSFSYANQLGQRNGAGVVYLSVFHPDVVRFLS 269 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-- 522 +K D++ R ++ +PD F + V +NA LFSP D+ YG+ F AY Sbjct: 270 TKKENADEKIRVKTLSLGLTVPDKFYELVAENADMFLFSP---YDVEREYGQAF--AYVN 324 Query: 523 --ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E YE I+ + K+ A L ++ + E+G+P+I D N +P G + Sbjct: 325 ITEEYENMVHNPNIRKY-KVKARELENEISKLQQESGYPYIINIDTANEANPID--GRIV 381 Query: 581 SSNLCTEITL---------NSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI + S EE + CNLGS N++ N A +I A Sbjct: 382 MSNLCSEILQVQKPSKIRDDQSYEEMGMDISCNLGSTNVV-----NMVQSPNFAQSIDVA 436 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 VR L V D + + K N IGLG MG + + I Y S E++E+ + Sbjct: 437 VRALTFVTDHTSIDAVPSVKNGNELQHTIGLGAMGLHTLFAINQIDYGSDESLELTEAYF 496 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744 ++++ + +S ++AQERG ++ +F S + G++ I E++ + + + L Sbjct: 497 YAVNYYTLLSSNQIAQERGQSFYNFDKSDYASGLYFDRYIDQPFEIQSDKVKEIMKGIHL 556 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 P W LK++V+ G+ ++ AIAPT +I+ + S S+ P Sbjct: 557 PTAEDWQALKEKVQAHGLYHAYRQAIAPTGSISYVNETSASLHP---------------- 600 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 ++ +++R E Y + N D + + ++ID +I+ Sbjct: 601 -----IIRLIEER---QEKKTGKTYYPAPYLSN------DTIDYYKSVYDIDMRLVIDVY 646 Query: 861 SRRQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYYLR 904 + QK IDQ S+ L++ + PSG + L+ + AW G+K+ YY+R Sbjct: 647 AAAQKHIDQGMSMTLFMRSEIPSGLYPWKKADDNKLTTRDLNILRNYAWNQGIKSIYYVR 706 Query: 905 S 905 + Sbjct: 707 T 707 >gi|292489179|ref|YP_003532066.1| ribonucleoside-diphosphate reductase subunit alpha [Erwinia amylovora CFBP1430] gi|292900296|ref|YP_003539665.1| ribonucleoside-diphosphate reductase 2 subunit alpha [Erwinia amylovora ATCC 49946] gi|291200144|emb|CBJ47270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Erwinia amylovora ATCC 49946] gi|291554613|emb|CBA22272.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora CFBP1430] Length = 716 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 176/644 (27%), Positives = 290/644 (45%), Gaps = 67/644 (10%) Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 R F F+ +LG Y Y L +G R ++F RV M + A+ + + Sbjct: 97 RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLESFTERVCMVALTLAKGDQPLALALADEI 154 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D++ R ++ IPD+ + N LFSP +V ++ L + I+ + + Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQQMALFSPYDVERIYALPFADISISEKYH 334 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E AD + F I+ ++ + + FE+G+P+I F+D N +P G ++ SNLC Sbjct: 335 EMLADTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 390 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N+ +E + CNLGS+N+ AH D A T+ AVR L Sbjct: 391 SEILQVNTPTEYNDDLSYRHIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGLT 445 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + H++ ++ N AIGLG M L I Y S ++ + +++ Sbjct: 446 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIEYGSEAGLDFTNIYFYTVTY 505 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSR 743 HA+ S +LA+ER +S F S + G + +G +A + + + ++ Sbjct: 506 HALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQRWQPRTAQVAALFAKAGIEIPTQ 565 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W LK+ V G+ N N AI PT +I+ I + SI P Sbjct: 566 QQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------- 606 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +V+ ++ R + Y+ N +D + + A++I P +I++ + Sbjct: 607 --IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQAFYRDAYDIGPEAIIDTYAEA 655 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 656 TRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699 >gi|157325078|ref|YP_001468503.1| gp123 [Listeria phage A511] gi|66733086|gb|AAY52904.1| gp123 [Listeria phage A511] Length = 466 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 199/384 (51%), Gaps = 21/384 (5%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY---IEEGVKARLLH 270 P + AR L++L YKK K ++ Y Y + + G+ + + Sbjct: 92 PEWEFFAARLYLQRL--------YKKASKNRFYDAIMKYGSYVGLHESLAQRGIYSVDIL 143 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLA 329 E +L+ + +D F Y GL +L RY ++ E+PQ ++ +A+ L Sbjct: 144 EKYSREELMEAETFIDSSKDLLFTYNGLYLLATRYLATDEDKKVFELPQERWLTIALFLM 203 Query: 330 LKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E E + VE Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ + Sbjct: 204 QDEKENRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNT 263 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A ++K GG+G VR GA I G G S G +P++K N+TAV+V+Q G RKGA+ Sbjct: 264 DVARVSKQGGGVGVYIGNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVSVDQLGARKGAI 323 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 L+ +H D+E FLDLR N GD R R HD+ T+ IPDLFM+ V W LF P EV Sbjct: 324 TVTLDVFHKDIEAFLDLRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRGEWYLFDPYEVK 383 Query: 509 D-----LHDLYGKE--FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 L D Y KE + E YE G I +++ A+ + ++++ ETG P++ Sbjct: 384 QKKGWYLQDYYDKEKGSGLFREKYEELIQDGTISK-KRVKALDIMKRIMISQLETGTPFM 442 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLC 585 ++D N +P H G++++SNLC Sbjct: 443 FYRDTVNRANPNSHAGMIYASNLC 466 >gi|300718017|ref|YP_003742820.1| ribonucleoside-diphosphate reductase, alpha subunit [Erwinia billingiae Eb661] gi|299063853|emb|CAX60973.1| Ribonucleoside-diphosphate reductase, alpha subunit [Erwinia billingiae Eb661] Length = 702 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 183/659 (27%), Positives = 296/659 (44%), Gaps = 71/659 (10%) Query: 276 FDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKE 332 F+ V + Y+R F F+ +LG Y Y L +G R + F RV M L L + Sbjct: 70 FEFVSSLFEQAYQRRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAK 127 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 ++ A+ + S F +TPT N G + +L SCFL + D++ I ++ Sbjct: 128 GDR-SLALSLMEEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRSVNSAL 186 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Y Sbjct: 187 QLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVY 246 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 247 LHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKTNQQMALFSPYDVERIY 306 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 L + I+ + E AD + F I+ ++ + + FE+G+P+I F+D N + Sbjct: 307 GLPFADISISEKYEEMLADDRITRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRAN 364 Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619 P + G ++ SNLC+EI +N+ +E + CNLGS+N+ AH D Sbjct: 365 PIK--GRINMSNLCSEILQVNTPTEYNDDLSYRRIGKDISCNLGSLNI-AH----TMDSP 417 Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 + T+ AVR L V D + H++ ++ N AIGLG M L I Y S Sbjct: 418 DFSRTVEIAVRGLTAVSDQSHIHSVPSIERGNAQSHAIGLGQMNLHGYLAREGIQYGSEV 477 Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A++ + I++HA+ S +AQERG ++ F+ S + G + + + R Sbjct: 478 ALDFTNLYFYTITYHALRTSNLMAQERGERFAGFEESRYASGEYFAQYVEQRWQPRTPEV 537 Query: 738 MNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +R LP W EL++ V G+ N N AI PT +I+ I + SI P + Sbjct: 538 AALFARAGITLPGQKEWRELREAVMKHGIYNQNLQAIPPTGSISYINHATSSIHPIVSRI 597 Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K +G F+ N D + + A Sbjct: 598 EIRKEGKTGRVYYPAPFMNN-------------------------------DNQAFYRDA 626 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++I P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 627 YDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTLYYIRLR 685 >gi|320353411|ref|YP_004194750.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobulbus propionicus DSM 2032] gi|320121913|gb|ADW17459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobulbus propionicus DSM 2032] Length = 723 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 172/649 (26%), Positives = 287/649 (44%), Gaps = 93/649 (14%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLA---LKETEKEKRAVEFYNLLSSFHFMCST 355 +L RY+L G +E + RV+ +A L + + E A F+ ++ F+ ++ Sbjct: 17 VLERRYYLKDAEGKPLENWETLCRRVSNAVAQVDLDQPDYEGLADRFFTMIYYLDFLPNS 76 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N+GT QLS+CF+ V D + GIF +++ A++ K GG G ++ +R + + Sbjct: 77 PCLMNAGTDLGQLSACFVLPVEDSMDGIFTSIRNGALVHKTGGGTGYSFSRLRPKNSAVQ 136 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T G + G + F V + + QGGKR+GA L H D+ EF+ ++ D+ R Sbjct: 137 STQGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDILEFIVAKQ----DQTR 192 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 + N + I DLFM+ V + + L P G+I Sbjct: 193 YTNFNFSVAITDLFMEAVKNDQEYDLIDPSN-------------------------GDI- 226 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 R + A ++ K++ + + G P + F D N + +G ++N C E L Sbjct: 227 -IRTLRAREVFDKIVDLAWHNGEPGVLFIDAANRDNTTPQLGKFEATNPCGEQWLLPYES 285 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNLGSINL + N + D+++L +T R AVR LDNVID N I + + R Sbjct: 286 ----CNLGSINLGQYVKNGKVDWERLGATARLAVRFLDNVIDCNRFPIPEIAEMTQKTRK 341 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG+MG L L +PY S E + A E M F+ A +AS+ELA +G + ++ Sbjct: 342 VGLGIMGLHDMLIQLELPYGSEEGRQAAAEVMAFVRTEAEAASIELATMKGPFPAY---- 397 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 DE R + P RN+ +I PT T++ I Sbjct: 398 ------------------DE----RFNTYP-----------ARRNAALTSIQPTGTVSMI 424 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + +P + + +K+ M D ++ + L + + + + A + + G++ Sbjct: 425 ADCASGCEPYFSIVMIKNVMDNDRLLMVNKLFERIARAEGFYSAELMEKVAKSGTVIGHA 484 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 IP ++I TA +I P I QK +D + S + L PS D + R A++ Sbjct: 485 AIPKRWQEIFRTAQDISPEQHIRMQGVLQKNGVDSSISKTINL--PSSATQDDV-RTAYM 541 Query: 895 MGLK------TTYYLRSRS-------ATSVEKSTLKGVDGKLNAVPVTD 930 +G + T Y SR A+S +K+ + G +G + + D Sbjct: 542 LGFELGCKGLTVYRDGSRDHQVLNTVASSADKTAVAGSEGLVQKATLPD 590 >gi|184200806|ref|YP_001855013.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria rhizophila DC2201] gi|183581036|dbj|BAG29507.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria rhizophila DC2201] Length = 719 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 186/660 (28%), Positives = 296/660 (44%), Gaps = 72/660 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y F F+ +LG Y Y L +G R +E + + V++ LA + KR V Sbjct: 98 YGYKFRFQTFLGAFKFYTSYTLKTFDGQRYLERFEDRVVMVSLYLADGDETLAKRLV--- 154 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G + +L SCFL D++ I + L+K GG+ Sbjct: 155 GEIISGRFQPATPTFLNAGKKQRGELVSCFLVRFEDNMESIGRNINSALQLSKRGGGVAF 214 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 215 ALTNLRESGAPIKMIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILNF 274 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + ++ Sbjct: 275 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNQDMYLFSPYDVERIYGMPFADVNVS- 333 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y D I KI+A ++ + + FE+G+P+I F+D N +P G + S Sbjct: 334 EKYHEMVDDSRITK-TKINAREFFQTVAEVQFESGYPYIMFEDTVNRANPID--GKIIMS 390 Query: 583 NLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI S + CNLGS+N+ + F ++I TA+R Sbjct: 391 NLCSEILQVSEPSVYNEDLTYAEVGKDISCNLGSMNIAMAMESPDF-----GASIETAIR 445 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D+ N ++ ++ N A+GLG M L H+ Y S E V+ + Sbjct: 446 GLTAVSDMSNIDSVPSIRRGNQMSHAVGLGQMNLHGYLAKEHVFYGSEEGVDFTNMYFYA 505 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGLLAEVR-DELAMNRTSRL 744 +++HAI AS +A+ERG ++ F+ S + G + ID A R EL L Sbjct: 506 VTYHAIRASNLIAKERGESFVGFEKSDYANGTYFDKYIDGTWEPATARVRELFARAGVAL 565 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 P W EL+++V GM N N A+ PT +I+ I + SI P + + K G Sbjct: 566 PTAQDWRELREKVMADGMYNQNLQAVPPTGSISYINNSTSSIHPIASRIEIRKEGKLGRV 625 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 F+ +E N+E D A+EI +I++ Sbjct: 626 YYPAPFMNDE-----------------------NLEYFQD--------AYEIGFEKIIDT 654 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY R R ++E + ++G Sbjct: 655 YAAATQHVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTMYYSRIRQ-LALEGTEVEG 713 >gi|254699598|ref|ZP_05161426.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 5 str. 513] Length = 738 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 188/676 (27%), Positives = 302/676 (44%), Gaps = 82/676 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +V++++ R E I + Y + N D+L + Sbjct: 628 P---------------------IVSKIEIR---KEGKIGRVYYPAAFMAN-----DNL-E 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LRSRSATSVEKSTLKG 918 +R R ++E + ++G Sbjct: 718 IRLRQ-MALEGTQVQG 732 >gi|66732767|gb|AAY53358.1| gp55 [Listeria phage P100] Length = 449 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 195/368 (52%), Gaps = 13/368 (3%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRY---IEEGVKARLLHESMMDFDLVYLANDLK 286 R L +YKK K +++ Y Y + + G+ + + E +L+ + Sbjct: 83 RLYLQRLYKKASKNRFYDVIMKYGSYVGLHESLAQRGIYSVDILEKYSREELMEAETFID 142 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVE-FYN 344 +D F Y GL +L RY ++ E+PQ ++ +A+ L E E + VE Y Sbjct: 143 SSKDLLFTYNGLYLLATRYLATDEDKKVFELPQERWLTIALFLMQDEKENRMKLVEEAYW 202 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 LS+ + +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K GG+G Sbjct: 203 ALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKQGGGVGVYI 262 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR GA I G G S G +P++K N+TAV+V+Q G RKGA+ L+ +H D+E FLD Sbjct: 263 GNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVSVDQLGARKGAITVTLDVFHKDIEAFLD 322 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-- 517 LR N GD R R HD+ T+ IPDLFM+ V W LF P EV L D Y KE Sbjct: 323 LRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRGEWYLFDPYEVKQKKGWYLQDYYDKEKG 382 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 + E YE G I +++ A+ + ++++ ETG P++ ++D N +P H G Sbjct: 383 SGLFREKYEELIQDGTISK-KRVKALDMMKRIMISQLETGTPFMFYRDTVNRANPNSHAG 441 Query: 578 VVHSSNLC 585 ++++SNLC Sbjct: 442 MIYASNLC 449 >gi|1710389|sp|P50642|RIR1_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|515832|emb|CAA53100.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4] Length = 789 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 179/663 (26%), Positives = 296/663 (44%), Gaps = 68/663 (10%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------ 340 LGLQ + Y+ +L + G R+E FF+R+A E+ A Sbjct: 131 LGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTATHYTMEQPAMARVLVSGEVGWTYI 190 Query: 341 --EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396 F+ L+ + +TP + G ++SC+L V D I ++E + Sbjct: 191 FRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAIPALMEEVGPILCN 250 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+G + T G S+GV+ LK+ + +A+N G+R VC Y E WH Sbjct: 251 RGGIGLSLQRF-----NTPPTEGCSRGVMALLKLLDSMTMAINSDGERPTGVCVYFEPWH 305 Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKR----VTQNAG--WTLFSPDEVSD 509 D+ L++R D+ R ++ W PDLF R V +G WTLF D S Sbjct: 306 ADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYVDGESGIMWTLFD-DTASH 364 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN- 568 L +YG +F YE ER + + ++ + + ++ TG P++ FKD CN Sbjct: 365 LCHMYGNDFTREYERLERCGFGIDAIPIQDMAFIIVRSAVM-----TGSPFLMFKDACNR 419 Query: 569 -IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANN-----QFDYD 619 + G + SNLCTEI ++ + VCNL SINL LA N FD+ Sbjct: 420 HYHFDMRQRGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLALPPPNIAGVPYFDFA 479 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L TA ++ ++ + + K++K +R++GLG+ G + +L + ASPEA Sbjct: 480 ALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEA 539 Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 ++ + E + +++ AS L + + F+ S + +G P D+ + Sbjct: 540 HQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKYSRGELPFDAYP---------NV 590 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T+R W L+ +K G+ NS +A PT + + + S+ P Y NL+ K +G+ Sbjct: 591 TLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGE 650 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853 N L+ ++ + A + L + + ++ DL H TAFE D Sbjct: 651 VLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVGAFGDLPVGHPLSKFKTAFEYDQ 710 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907 LI + R ++DQ+QS++L++ EP+ KL + A+ GLKT YY + + Sbjct: 711 TMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIKK 770 Query: 908 ATS 910 AT+ Sbjct: 771 ATN 773 >gi|296118679|ref|ZP_06837255.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968168|gb|EFG81417.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium ammoniagenes DSM 20306] Length = 723 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 182/647 (28%), Positives = 289/647 (44%), Gaps = 68/647 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y F F+ +LG Y Y L R + + F RV+M A + Sbjct: 101 YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 159 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S F +TPT N+G + +L SCFL + D++ I A+ + L+K GG+ Sbjct: 160 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 219 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I +S G+IP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 220 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 279 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522 ++ D++ R ++ IPD+ +N LFSP D+ +YGK F +I+ Sbjct: 280 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVT 336 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E+Y + I +KI+A ++ + + FE+G+P+I F+D N +P + G ++ S Sbjct: 337 EHYAEMVEDPRITK-KKINARHFFQTVAELQFESGYPYIMFEDTVNDANPVK-TGRINMS 394 Query: 583 NLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI +NS S A CNLGS+N+ D + T+ A+R Sbjct: 395 NLCSEILQVNSPSSFNADLSYEQMGSDISCNLGSMNIAL-----AMDSPDFSGTVEAAIR 449 Query: 631 VLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D ++ + N AIGLG M L HI Y S E ++ + Sbjct: 450 GLTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGFLGREHIYYGSEEGLDFTNAYFAA 509 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNR 740 + + A+ AS ++A+ERG +S FK S + G F P + +V+ A ++ Sbjct: 510 VMYAALRASNKIAKERGETFSEFKDSEYASGAFFDRYDPAEFAPQTDKVKALFADSTIHT 569 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 S W +LK +V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 570 PSAEDWADLKAQVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 622 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 E I + Y + N D+L A+EI +I++ Sbjct: 623 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEIGHEKIIDTY 659 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 660 AIATKYVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLR 706 >gi|265985044|ref|ZP_06097779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. 83/13] gi|264663636|gb|EEZ33897.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. 83/13] Length = 713 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 298/677 (44%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 81 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQILAEIQFESGYPYIMFEDTVNRAN 375 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P + G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 376 PIE--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 692 YIRLRQ-MALEGTQVQG 707 >gi|255683174|ref|YP_003084382.1| UL39 [Duck enteritis virus] gi|158343205|gb|ABW35295.1| ribonucleotide reductase subunit 1 [Anatid herpesvirus 1] gi|254839989|gb|ACT83535.1| UL39 [Anatid herpesvirus 1] Length = 810 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 173/601 (28%), Positives = 274/601 (45%), Gaps = 60/601 (9%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAKYS 397 F+ LSS + +TP + G +SC+L TT DD + L E A + + Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDT--VRSILNEVAPILQSR 278 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G + H N +S+G++ LK+ + +A+N R VC Y+E WH Sbjct: 279 GGVG--------IALHTLNQNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHA 330 Query: 458 DVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510 D L ++ ++ R + +A W+PDL KR ++ WT F D S+L Sbjct: 331 DTRAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFD-DRASNL 389 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 LYG FE YE YE + R++ ++ R T TG P+I KD N Sbjct: 390 SKLYGDRFEREYEYYESSGFGVDSIPIREM-MYSIVRSAAT----TGSPFIVLKDAFNRH 444 Query: 571 -SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-----LAHFANNQFDYDKLAST 624 + SNLCTEI + + VCNL SINL + +FD L Sbjct: 445 YHLDTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRA 504 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +RTA ++ ++ N + EK++ HR+IG+GL G + L + EA ++ Sbjct: 505 VRTATIFVNAMMLCNDYPTEKSRAGMERHRSIGIGLQGLHTTFLRLGLDMVCDEARKLNK 564 Query: 685 ESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 E + A++ S EL E G +S F S++ G F D +++ + T Sbjct: 565 RIAELMLLEAMTTSCELC-EHGLPKFSDFDESIYSSGRFHFDGW-------EDVEL--TE 614 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WDEL++RVKT G+ NS +A+ PT + + + VS+ P + NL+ K + +G+ Sbjct: 615 QYEWDELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRP 674 Query: 803 NSFLVNELK-----QRDLWD--EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 N L+ EL+ ++D + EA+ S + GN +K + T FE + + Sbjct: 675 NPLLMEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMK--YKTVFEYNQID 732 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 L+ R ++D +QS +LY+ E S + + A+ GLKT YY R R AT Sbjct: 733 LLNMCRDRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKAT 792 Query: 910 S 910 + Sbjct: 793 N 793 >gi|284504237|ref|YP_003406952.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus] gi|282935675|gb|ADB03990.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus] Length = 916 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 186/342 (54%), Gaps = 20/342 (5%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLH- 308 PE F + + +G+K+ +L E +F + L N +ERD F+++ + L Y L Sbjct: 71 PEKFSQ-MAKGMKS-VLDEKFYEFVASHSQELDNICSHERDNRFDWMAINTLEKSYLLKK 128 Query: 309 --INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 +G E PQ ++RVA L + + +K K EFY+ LS + ++P FN+G + Sbjct: 129 KCFDGKLRVFERPQHMYLRVATQLWMPDVQKIK---EFYDGLSLGFYTVASPIFFNAGLK 185 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 SSCFL +PDDL GI ++ A+++ SGG+G + VR + I G G+S GV Sbjct: 186 KFSGSSCFLGKIPDDLIGIIDTWKQMAIISSRSGGVGYSASSVRH--SDIGGGLGESSGV 243 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 + L+V + V+QGG+RKG+ +L WHID+ F+D +K GDD ++ + A W Sbjct: 244 VSLLRVPDAVLGYVDQGGRRKGSGTFFLACWHIDIFTFVDAKKPGGDDLKKARQLFYAIW 303 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 DLFMKRV + W+LF P E L ++YGK+FE YE YE++ + + A Sbjct: 304 TSDLFMKRVETDGNWSLFCPKEAPGLDEIYGKDFEDLYERYEKEG-----RARTTVKAQE 358 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 LW +L E G P+I +KD ++ Q+H G+ HS NLC Sbjct: 359 LWHHILVAQAEVGMPFIVYKDAICRKNNQKHTGIPHSLNLCV 400 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 177/367 (48%), Gaps = 54/367 (14%) Query: 585 CTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 C EIT N+S EE A CNL S+ N + ++D+ LAS++R VR L+NV+D N + Sbjct: 538 CLEITENTSDEEIASCNLSSVCLNSFVDKESKKYDFGALASSVRFIVRSLNNVVDRNYYP 597 Query: 643 IE--KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 E K +N HR +G+G+ G ++ I + EA + + E + A++ S + Sbjct: 598 SELPSIKTTNLRHRPLGIGVQGLADTFAMMDICWGDEEARNLNRKIFETMYHAAVTESRK 657 Query: 701 LAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL---- 749 +++ER + Y +F GS +G F D + D A+++ S +P+D + Sbjct: 658 ISKERASLGFQTPYYETFPGSPLSKGFFAHD-------LWDAEALHKESGIPFDSITVEQ 710 Query: 750 --------------------KKRVKTI--GMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 K+R++T+ G+ NS +A+ PTA+ A I ++S + Sbjct: 711 VKSYRKKKGIPESFCGFDWDKERLETMRDGVYNSLLIALMPTASTAQILRNNESFEAFTS 770 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI--------ERIPD 839 + ++ +SG F VVN ++++ +W++ + GS+ I ER+ + Sbjct: 771 IIGKRTVLSGAFAVVNRHFIDDMIGLGVWNKKNMLICLKGQGSVQGITTDDITKFERL-E 829 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +K+ + AFE+ L + R +++ Q+ S N ++ P+ +KL + W G KT Sbjct: 830 HIKRKYLNAFELSQKRLCQLGIDRSRYVCQSSSHNCFMRNPTYQKLTSYHFFQWENGAKT 889 Query: 900 -TYYLRS 905 YYLR+ Sbjct: 890 GMYYLRT 896 >gi|297249810|ref|ZP_06933511.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus bv. 5 str. B3196] gi|297173679|gb|EFH33043.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus bv. 5 str. B3196] Length = 722 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 90 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 149 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 150 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 206 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 207 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 266 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 267 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 326 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 327 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 384 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 385 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 437 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 438 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 495 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 496 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 552 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 553 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 611 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 612 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 645 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 646 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 700 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 701 YIRLRQ-MALEGTQVQG 716 >gi|311992968|ref|YP_004009835.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj61] gi|295815257|gb|ADG36183.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj61] Length = 750 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 204/756 (26%), Positives = 332/756 (43%), Gaps = 84/756 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLETA 201 +K++ G F+ ++ ++ A G++ D+ + ++ D ++ S+++ A Sbjct: 1 MKVIKSSGIAQEFDQNKIMQVLNWALEGIEFTSDIDVYDLFDRIIPHLKDEMTTSEIQDA 60 Query: 202 LI-FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 ++ ++ ++ +E +Y V + LR+ V P K H + I Sbjct: 61 IVKVAADSITLEEQDYQYVASNLAQFGLRKAVFGQF--DPPKFIDHVTSVTAHGLYDSEI 118 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQ 318 LL S +F+ + A D + RDF F Y G L D+Y + G E PQ Sbjct: 119 -------LLKYSPAEFEELEEAID--HSRDFTFTYAGTCQLMDKYLVKDRSTGKIYETPQ 169 Query: 319 AFFMRVAMGLALKETEKEK-RAV-EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374 FM + M L E + + +AV EFY +S+ TP + +G R P Q SSC + Sbjct: 170 FAFMLIGMCLHQDEDKSTRLQAVKEFYEAVSTRKISLPTPIM--AGVRTPTRQFSSCVVI 227 Query: 375 TVPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 D L I A N+ + KY G+G + +R G+ I K GV+PF K Sbjct: 228 ESGDSLDSINDA---NSAIVKYVSKRAGIGINAGMIRAEGSKIGPGEVKHTGVVPFWKHF 284 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 N +QGG RKG+ + WH++VE + L+ N G + R M+ I +L ++ Sbjct: 285 NSAVHCCSQGGIRKGSATMFFPMWHLEVENLIVLKNNKGVEENRIRHMDYGLQINELLIE 344 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 R N TLFSPD +L+D Y + F YE+ E+Q + +++ A LW + Sbjct: 345 RYINNDYITLFSPDAHPELYDSYFSNPERFREIYEDLEKQP----LVRKKRMKARTLWEE 400 Query: 549 ML-TMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCN 601 M T T + +F D N P + + V SNLC EI L++ E A+C Sbjct: 401 MFATERANTARIYPSFVDNINEYGPWIREIAPVRQSNLCMEIALHTKDIGREDGEIALCT 460 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + L + NQ + +++A + VR LDN++D + EKA S +R++G+G+ Sbjct: 461 LSAFVLDSFDWKNQDEINRIAMVM---VRSLDNLLDYQDYPHEKA-LSAKEYRSLGVGVT 516 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + L Y +A EI E E + + I AS++LA+E+G + + QG Sbjct: 517 NYAAWLASNSASYN--DANEITHELFERLQYALIKASIQLAKEKGPSPRLYMTKYGQGKL 574 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 PID DEL + L W+ L++ + GMRN+ A+ P + + + + Sbjct: 575 PID---WYRPSVDEL-VEPVYVLDWEALREDLILYGMRNTTLSAMMPCESSSQVSNSTNG 630 Query: 782 IDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 ++P + VKS+ G F VV ++ N+L W+ A + Y Sbjct: 631 LEPPRGPVSVKSSKGGAFNQVVPNYAENQLFYDFAWELAKTGNKGY-------------- 676 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + S QKW DQA SLN Y Sbjct: 677 ----------------LTQCSIIQKWNDQAISLNTY 696 >gi|256157978|ref|ZP_05455896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M490/95/1] gi|256253063|ref|ZP_05458599.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti B1/94] Length = 738 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 717 YIRLRQ-MALEGTQVQG 732 >gi|300776392|ref|ZP_07086250.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] gi|300501902|gb|EFK33042.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] Length = 552 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 172/594 (28%), Positives = 266/594 (44%), Gaps = 110/594 (18%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A K K + F +++ S+P N GT+ SCF +PD + GI + Sbjct: 41 AAKRLYKPELQPAFKEMITKGWISFSSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMG 100 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 E M K GG + +R G + NGKS G + F+K+ + V+QGG R+GA Sbjct: 101 EVIMQTKIGGGTSGYFGELRNRGTAVT-DNGKSSGAVSFMKLFDTAMDVVSQGGVRRGAF 159 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 AYL+ H D+EEFL ++ D ++ T +PD +M+ Sbjct: 160 AAYLDIDHGDIEEFLSIK----DIGSPIQNLFTGVCVPDYWMQ----------------- 198 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 D+ D G+++ RK+ W ++L + G P+I F D N Sbjct: 199 DMID-------------------GDMEK-RKV-----WARVLESRQQKGLPYIFFTDNVN 233 Query: 569 IRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 PQ + +G+ V++SNLC+EI L S+ EE+ +C L S+NL +D K + Sbjct: 234 RNKPQVYKDLGMTVNASNLCSEIMLPSTMEESFICCLSSMNL------ELYDEWKDTDAV 287 Query: 626 RTAVRVLDNVIDI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + A+ LD V+ + ++ A+ HRA+GLG++G+ S L IP+ S EA Sbjct: 288 KLAIYFLDAVLSEFIDKTEGNYYLQGARNFAMRHRALGLGVLGYHSYLQKNMIPFESFEA 347 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + I A AS ELA G KG Sbjct: 348 TQFNARAFRHIKEQAEQASRELANIYGEPEVLKG-------------------------- 381 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGD 798 G+RN+ MAIAPT + + I G S I+P N Y G+ Sbjct: 382 ----------------YGLRNTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGN 425 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F N +L L+++ L +E + + GS+ ++ + + K + T EI PM +I Sbjct: 426 FMRKNKYLAKLLEEKGLDNEETWRTIMLNHGSVQHLNELTPEEKAVFKTFKEISPMEIIS 485 Query: 859 SASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 A++RQ++IDQAQSLNL + PS K ++++Y +AW G+KT YY RS S + Sbjct: 486 QAAQRQQYIDQAQSLNLQI--PSTMPVKDVNYLYIEAWKKGVKTLYYQRSSSVS 537 >gi|213963757|ref|ZP_03392007.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sputigena Capno] gi|213953637|gb|EEB64969.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sputigena Capno] Length = 551 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 169/584 (28%), Positives = 257/584 (44%), Gaps = 116/584 (19%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F +++ S+P N GT SCF VPD + GI L E M K GG Sbjct: 53 FKEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTS 112 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D EE Sbjct: 113 GYFGELRSRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEE 171 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL ++ D ++ +PD +M+ + Sbjct: 172 FLQIK----DVEFPIQNLFFGICVPDYWMQEMID-------------------------- 201 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578 G+++ R LW ++L + G P+I F D N PQ + + Sbjct: 202 ----------GDVEKRR------LWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMI 245 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + SSNLC+EI L SS +E+ +C L S+NL FD K ++ AV LD V+ Sbjct: 246 IRSSNLCSEIMLPSSEDESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLS- 298 Query: 639 NCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 IEK K + + HRA+GLG++G+ S L IP+ S EA + + ++ Sbjct: 299 --EFIEKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFKY 356 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A A+ ELA G KG Sbjct: 357 IREEAEKATKELAHIYGEPEVLKG------------------------------------ 380 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN+ MAIAPT + + I G VS I+P N Y G+F N +L Sbjct: 381 ------YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQ 434 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L+++ L +E + ++ ++GS+ +++ + K + T EI PM +I A++RQ +ID Sbjct: 435 LLEEKGLNNEDVWRSIRLNNGSVQHLQELTQQEKNVFKTFKEISPMEIISQAAQRQAYID 494 Query: 869 QAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 Q QSLNL + PS K ++ + +AW +G+K+ YY RS+S Sbjct: 495 QTQSLNLNI--PSVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVA 536 >gi|221134588|ref|ZP_03560893.1| ribonucleotide-diphosphate reductase subunit alpha [Glaciecola sp. HTCC2999] Length = 773 Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 202/791 (25%), Positives = 336/791 (42%), Gaps = 87/791 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A L +VS V + + +DG+S + LI Sbjct: 4 QLSVTKRDGVTEAIDLDKIHKVITWAAKDLHNVSVSQVEIKAHIQFFDGISTEVIHETLI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + P+Y + AR + LR++ ++ P+ H + +Y +E Sbjct: 64 KSAADLISTDSPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFDHVKSMVERGKY-----DE 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 + A E D L + RD F Y ++ L +Y + ++G E Q Sbjct: 118 HLLADYTAEEFEAMD-----GFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K R FY+ +S F TP + +G R P Q SSC L Sbjct: 173 YVLVAACL-FANYPKATRLDYIKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 AGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R ++ L R+ + Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYTRLIK 349 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N TLFSP +V L+D + + + E Y + + I+ + I A+ L+ + Sbjct: 350 NQNITLFSPSDVPGLYDAFFADQDKFDELYVKYENDPSIRK-KSIKAMELFSLFMQERAS 408 Query: 556 TGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSIN 606 TG ++ D CN SP V V SNLC EI L + E A+C L + N Sbjct: 409 TGRIYLQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLEHVMDPEGEIALCTLSAFN 468 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 L A + D+L AVR LD+++D + + A+ ++ R +G+G++ F Sbjct: 469 LGAIKS-----LDELEELADLAVRALDSLLDYQDYPVPAARNASLGRRTLGIGVINFAYY 523 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L + Y+ A + ++ E I ++ + AS LA E+G F + + QG+ PID+ Sbjct: 524 LAKNGVKYSDHSANGLIHKTFEAIQYYLMKASNNLAIEQGPCPLFNETTYSQGLMPIDTY 583 Query: 727 GL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + DE L WD L++ V G+RNS A+ P+ T + I + I+P Sbjct: 584 KKDIDNICDE-----PLHLDWDSLRESVVKHGLRNSTLSALMPSETSSQISNATNGIEPP 638 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 ++ +KS+ G V+ + + +D ++ ++ DL +DG Sbjct: 639 RGHISIKSSKDG---VLKQVVPDYENLKDKYE--LLWDLPSNDG---------------- 677 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLM 895 ++ + QK++DQ S N D PS G K+ D + + + Sbjct: 678 ----------YLQLCAIMQKFVDQTISANTSYD-PSKYEGNKVPMKLLIKDLL--TTYKL 724 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 725 GIKTLYYHNTR 735 >gi|260904663|ref|ZP_05912985.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacterium linens BL2] Length = 718 Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 171/612 (27%), Positives = 279/612 (45%), Gaps = 74/612 (12%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382 VA L L + + E+ A + + S F +TPT N+G + +L SCFL V D+L Sbjct: 135 VATALYLGQGD-EQLATGLVDEMLSGRFQPATPTFLNAGKAQRGELVSCFLLRVEDNLES 193 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I ++ L+K GG+ + +R GA I ++ GV+P +K+ D+ NQ G Sbjct: 194 IGRSVNSALQLSKRGGGVALLLSNLREAGAPIKQIENQASGVVPVMKILEDSFSYANQLG 253 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N LF Sbjct: 254 ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFQLAKDNRDMHLF 313 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP +V + + ++ ++Y+ +I+ +SA +R + + FE+G+P++ Sbjct: 314 SPYDVQREYGTPLSDLSVS-DHYDELVANPQIRK-NTVSAREFFRTLAELQFESGYPYVL 371 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI--TLNSSSEETAV----------CNLGSINLLAH 610 F+D N +P G ++ SNLC+EI T S+ + A+ CNLGS+N+ Sbjct: 372 FEDTVNRANPL--AGHINMSNLCSEILQTNTPSTYDNAIGYQEIGQDISCNLGSLNIAQ- 428 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 A N D L ST+ TAVR L +V D N + K N AIGLG M L Sbjct: 429 -AMNSSD---LGSTVETAVRALTSVSDQTNVDAVPSVAKGNDASHAIGLGQMNLHGYLAS 484 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723 I Y S E ++ D I++HAI AS ++A ERG ++ F+ S + G + Sbjct: 485 QRIHYGSEEGIDFTDIYFLTITYHAIRASNQIAIERGKTFAGFEDSTYADGSYFDKYTQH 544 Query: 724 DSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D VR EL + +P W+ L++ VK G+ N+ A+ PT +I+ + + Sbjct: 545 DWQPATQRVR-ELFADAGVTIPAGEDWERLRESVKAQGIYNAYLQAVPPTGSISYVNNST 603 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----E 835 SI P + ++ +G +G + Sbjct: 604 ASIHPVAAKIEIRK----------------------------------EGKLGRVYYPAP 629 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + DD + A+EI +I++ + + +DQ SL L+ D + + ++ AW Sbjct: 630 HMTDDNVDFYQDAYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDTATTRDINRAQIYAWR 689 Query: 895 MGLKTTYYLRSR 906 G+KT YY+R R Sbjct: 690 KGIKTLYYIRLR 701 >gi|17989275|ref|NP_541908.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|189023016|ref|YP_001932757.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus S19] gi|237817304|ref|ZP_04596296.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus str. 2308 A] gi|254691264|ref|ZP_05154518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 6 str. 870] gi|254695434|ref|ZP_05157262.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|254699052|ref|ZP_05160880.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254702721|ref|ZP_05164549.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 3 str. 686] gi|254706145|ref|ZP_05167973.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M163/99/10] gi|254711556|ref|ZP_05173367.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis B2/94] gi|254712153|ref|ZP_05173964.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M644/93/1] gi|254715224|ref|ZP_05177035.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M13/05/1] gi|254732498|ref|ZP_05191076.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 4 str. 292] gi|256029808|ref|ZP_05443422.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M292/94/1] gi|256043235|ref|ZP_05446172.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256111773|ref|ZP_05452744.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|256256450|ref|ZP_05461986.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 9 str. C68] gi|256262716|ref|ZP_05465248.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 2 str. 63/9] gi|260544999|ref|ZP_05820820.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella abortus NCTC 8038] gi|260564447|ref|ZP_05834932.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 1 str. 16M] gi|260568372|ref|ZP_05838841.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis bv. 4 str. 40] gi|17985138|gb|AAL54172.1| ribonucleoside-diphosphate reductase alpha chain [Brucella melitensis bv. 1 str. 16M] gi|189021590|gb|ACD74311.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella abortus S19] gi|237788117|gb|EEP62333.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus str. 2308 A] gi|260098270|gb|EEW82144.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella abortus NCTC 8038] gi|260152090|gb|EEW87183.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 1 str. 16M] gi|260155037|gb|EEW90118.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis bv. 4 str. 40] gi|263092504|gb|EEZ16757.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 2 str. 63/9] gi|326410494|gb|ADZ67558.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis M28] gi|326553786|gb|ADZ88425.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis M5-90] Length = 738 Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 717 YIRLRQ-MALEGTQVQG 732 >gi|261750055|ref|ZP_05993764.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 5 str. 513] gi|261739808|gb|EEY27734.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 5 str. 513] Length = 713 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 188/676 (27%), Positives = 302/676 (44%), Gaps = 82/676 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 81 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +V++++ R E I + Y + N D+L + Sbjct: 603 P---------------------IVSKIEIR---KEGKIGRVYYPAAFMAN-----DNL-E 632 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY Sbjct: 633 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 692 Query: 903 LRSRSATSVEKSTLKG 918 +R R ++E + ++G Sbjct: 693 IRLRQ-MALEGTQVQG 707 >gi|317049231|ref|YP_004116879.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp. At-9b] gi|316950848|gb|ADU70323.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. At-9b] Length = 712 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 186/663 (28%), Positives = 295/663 (44%), Gaps = 77/663 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE 332 DF+ + +D F F +LG Y Y L +G R ++F R M Sbjct: 79 DFNFLCQLHDEADAWGFRFHTFLGAWKFYTSYTLKTFDGKR--YLESFEQRACMVALTLA 136 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A E + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 137 RGNEALARELLAEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSAL 196 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA + Sbjct: 197 QLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVW 256 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 257 LNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRLAKENREMALFSP---YDVE 313 Query: 512 DLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YGK F I+ E AD K F I ++ + + FE+G+P+I ++D N Sbjct: 314 RIYGKAFGDISISEHYDEMLADDRIRKTF--IQPRDFFQTLAEIQFESGYPYIMYEDSVN 371 Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616 +P G ++ SNLC+EI +NS+SE + CNLGS+N+ AH Sbjct: 372 RSNPI--AGRINMSNLCSEILQVNSASEFHDDLSYRRVGKDISCNLGSLNI-AH----AM 424 Query: 617 DYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D LA T+ AVR L V D++ +++ + N AIGLG M L + Y Sbjct: 425 DSRNLAQTVEVAVRALTAVSDMSEINSVPSVAEGNRRSHAIGLGQMNLHGYLAREGMAYG 484 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS--------- 725 S EA++ + +++HA+ S LAQER ++ F+ S + G + D Sbjct: 485 SAEALDFTNLYFYCVTYHAVRTSNLLAQERKQSFDGFEKSTYASGAY-FDKYSERAWQPR 543 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +A++ + + S+ W L+ V T G+ N N AI PT +I+ I + SI P Sbjct: 544 TARVAQLFADAGIALPSQADWQALRDAVMTHGLYNQNLQAIPPTGSISYINHATSSIHPI 603 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + K +G F+ N+ N++ D Sbjct: 604 VSRIEIRKEGKTGRVYYPAPFMTND-----------------------NLDFYQD----- 635 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+ Sbjct: 636 ---AYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692 Query: 904 RSR 906 R R Sbjct: 693 RLR 695 >gi|307132177|ref|YP_003884193.1| ribonucleoside-diphosphate reductase 2, subunit alpha [Dickeya dadantii 3937] gi|306529706|gb|ADM99636.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Dickeya dadantii 3937] Length = 715 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 171/624 (27%), Positives = 283/624 (45%), Gaps = 77/624 (12%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA +T+ ++ V+ + S F +TPT N G + +L SCFL + D++ Sbjct: 134 VALTLAQGDTQLARQLVD---EMMSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMES 190 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A+ L+K GG+ T +R GA I +S GVIP +K+ D NQ G Sbjct: 191 IGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIMKMLEDAFSYANQLG 250 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA YL H D+ FLD R+ D++ R ++ IPD+ ++ N LF Sbjct: 251 ARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITLRLARANQDMHLF 310 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP +V ++ + E ++ E Y+ I+ + ++A ++ + + FE+G+P++ Sbjct: 311 SPYDVERVYGMPLSEISVS-EKYDELVSHPGIRKW-TLNARQFFQTLAEIQFESGYPYLM 368 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAH 610 F+D N +P G + SNLC+EI S + E CNLGS+N+ Sbjct: 369 FEDTVNRHNPV--AGRITMSNLCSEILQVSRASEYQEDLNYRQVGKDISCNLGSLNI--- 423 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D LA T+ AVR L V D+ + + N AIGLG M L Sbjct: 424 --ARVMDGGNLARTVEIAVRALTAVSDMSHIGAVPSIANGNTESHAIGLGQMNLHGYLAR 481 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG- 727 + Y S EA++ + +++HA+ S LAQER ++ F S + G F + Sbjct: 482 EGLFYGSEEALDFTNLYFYAVTYHALRTSSRLAQERNQTFAGFADSQYASGAFFDRYLSQ 541 Query: 728 ----LLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + VR+ A + LP W LK +V G+ N N A+ PT +I+ I + Sbjct: 542 EWQPVTERVRELFACAGIA-LPLPEDWLALKAQVMRHGLYNQNLQAVPPTGSISYINHAT 600 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----E 835 SI P +V+ ++ R +G +G + Sbjct: 601 ASIHP---------------------IVSRIEIRK-------------EGKLGRVYYPAP 626 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + +D ++ + A+EI P +I++ + + +DQ SL L+ D + + ++ AW Sbjct: 627 YMTNDNQRFYQDAYEIGPEKIIDTYAVATRHVDQGLSLTLFFPDTATTRDINKAQIYAWK 686 Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918 G+KT YY+R R ++E + ++G Sbjct: 687 KGIKTLYYIRVRQ-KALEGTEIQG 709 >gi|240047143|ref|YP_002960531.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma conjunctivae HRC/581] gi|239984715|emb|CAT04687.1| Ribonucleoside-diphosphate reductase [Mycoplasma conjunctivae] Length = 720 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 168/589 (28%), Positives = 273/589 (46%), Gaps = 77/589 (13%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + SC+L V D++ I A+ + L+K GG+ + +R Sbjct: 158 FQPATPTFLNAGKLNRGEFISCYLIRVEDNMESISRAVTTSLQLSKRGGGVSVLLSNLRE 217 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD ++ Sbjct: 218 QGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILNFLDTKREN 277 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526 D++ R ++ IPD+ + N LFS V D+ + YGK F I E Y Sbjct: 278 ADEKIRIKSLSLGVVIPDITFELAKNNQDMALFS---VYDVQNEYGKAFSDISITEEYYN 334 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + K F ISA L+ + + FE+G+P+I F+D N R+ H + SNLC+ Sbjct: 335 LLNNDRIKKTF--ISARKLFTLIAELHFESGYPYILFEDTVNKRNA--HPNRIVMSNLCS 390 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI S+ E CNLGS+N+ + + + + ++ LD+ Sbjct: 391 EIAQPSTPSEYLPDLTFSKIGQDICCNLGSLNIDKAMKSGK----EFGEMVYYSILALDH 446 Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V D++ +IEK K NH A+GLG M L I Y SPEA++ + + Sbjct: 447 VSRNSDLSAAPSIEKGNKLNH---AVGLGAMNLHGFLSQNQIFYDSPEALDFTNIFFYTM 503 Query: 691 SFHAISASVELAQERGAYSSFK------GSLWDQ------GVFPIDSIGLLAEVRDELAM 738 +FHA +S LAQ+ G +S F+ GS +D+ G F + + E+ + Sbjct: 504 AFHAFKSSSILAQKFGPFSGFENTKFANGSYFDKYTKAKSGEFEPKT-QKIKEIFAHYKV 562 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 ++ W +L + +K +G+ NS+ MAIAPT +I+ + + S+ P + V+ Sbjct: 563 EIPTKQDWIDLVENIKRVGLANSHLMAIAPTGSISYLNSCTPSLQPVVSPVEVRKEGKLG 622 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 V ++ +N D+++ A+E+ P+ +I Sbjct: 623 RVYVPAYKINF-----------------------------DNMRYYAKGAYELGPIPIIN 653 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A+ QK IDQ+ SL L+L D+ + + L+ Y A+ G + YY+R R Sbjct: 654 IAAEAQKHIDQSISLTLFLTDKATTRDLNKAYIHAFKKGCGSIYYVRIR 702 >gi|208401181|gb|ACI26682.1| UL39 [Anatid herpesvirus 1] Length = 810 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 173/601 (28%), Positives = 274/601 (45%), Gaps = 60/601 (9%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAKYS 397 F+ LSS + +TP + G +SC+L TT DD + L E A + + Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDT--VRSILNEVAPILQSR 278 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G + H N +S+G++ LK+ + +A+N R VC Y+E WH Sbjct: 279 GGVG--------IALHTLNQNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHA 330 Query: 458 DVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510 D L ++ ++ R + +A W+PDL KR ++ WT F D S+L Sbjct: 331 DTRAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFD-DRASNL 389 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 LYG FE YE YE + R++ ++ R T TG P+I KD N Sbjct: 390 SKLYGDRFEREYEYYESSGFGVDSIPIREM-MYSIVRSAAT----TGSPFIVLKDAFNRH 444 Query: 571 -SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-----LAHFANNQFDYDKLAST 624 + SNLCTEI + + VCNL SINL + +FD L Sbjct: 445 YHLDTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRA 504 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +RTA ++ ++ N + EK++ HR+IG+GL G + L + EA ++ Sbjct: 505 VRTATIFVNAMMLCNDYPTEKSRAGMERHRSIGVGLQGLHTTFLRLGLDMVCDEARKLNK 564 Query: 685 ESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 E + A++ S EL E G +S F S++ G F D +++ + T Sbjct: 565 RIAELMLLEAMTTSCELC-EHGLPKFSDFDESIYSSGRFHFDGW-------EDVEL--TE 614 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + WDEL++RVKT G+ NS +A+ PT + + + VS+ P + NL+ K + +G+ Sbjct: 615 QYEWDELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRP 674 Query: 803 NSFLVNELK-----QRDLWD--EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 N L+ EL+ ++D + EA+ S + GN +K + T FE + + Sbjct: 675 NPLLMEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMK--YKTVFEYNQID 732 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 L+ R ++D +QS +LY+ E S + + A+ GLKT YY R R AT Sbjct: 733 LLNMCRDRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKAT 792 Query: 910 S 910 + Sbjct: 793 N 793 >gi|9629746|ref|NP_045238.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 4] gi|2605964|gb|AAC59536.1| 21 [Equid herpesvirus 4] Length = 789 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 179/663 (26%), Positives = 296/663 (44%), Gaps = 68/663 (10%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------ 340 LGLQ + Y+ +L + G R+E FF+R+A E+ A Sbjct: 131 LGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTATHYTMEQPAMARVLVSGEVGWTYI 190 Query: 341 --EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396 F+ L+ + +TP + G ++SC+L V D I ++E + Sbjct: 191 FRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAIPALMEEVGPILCN 250 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+G + T G S+GV+ LK+ + +A+N G+R VC Y E WH Sbjct: 251 RGGIGLSLQRF-----NTPPTEGCSRGVMALLKLLDSMTMAINSDGERPTGVCVYFEPWH 305 Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKR----VTQNAG--WTLFSPDEVSD 509 D+ L++R D+ R ++ W PDLF R V +G WTLF D S Sbjct: 306 ADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYVDGESGIMWTLFD-DTASH 364 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN- 568 L +YG +F YE ER + + ++ + + ++ TG P++ FKD CN Sbjct: 365 LCHMYGNDFTREYERLERCGFGIDAIPIQDMAFIIVRSAVM-----TGSPFLMFKDACNR 419 Query: 569 -IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANN-----QFDYD 619 + G + SNLCTEI ++ + VCNL SINL LA N FD+ Sbjct: 420 HYHFDMRKRGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLALPPPNIAGVPYFDFA 479 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L TA ++ ++ + + K++K +R++GLG+ G + +L + ASPEA Sbjct: 480 ALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEA 539 Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 ++ + E + +++ AS L + + F+ S + +G P D+ + Sbjct: 540 HQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKYSRGELPFDAYP---------NV 590 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T+R W L+ +K G+ NS +A PT + + + S+ P Y NL+ K +G+ Sbjct: 591 TLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGE 650 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853 N L+ ++ + A + L + + ++ DL H TAFE D Sbjct: 651 VLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVGAFGDLPVGHPLSKFKTAFEYDQ 710 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907 LI + R ++DQ+QS++L++ EP+ KL + A+ GLKT YY + + Sbjct: 711 TMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIKK 770 Query: 908 ATS 910 AT+ Sbjct: 771 ATN 773 >gi|163844497|ref|YP_001622152.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis ATCC 23445] gi|163675220|gb|ABY39330.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis ATCC 23445] Length = 713 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 81 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQVGARQGAGAVY 257 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHQDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 692 YIRLRQ-MALEGTQVQG 707 >gi|152964773|ref|YP_001360557.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus radiotolerans SRS30216] gi|151359290|gb|ABS02293.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus radiotolerans SRS30216] Length = 720 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 179/670 (26%), Positives = 291/670 (43%), Gaps = 72/670 (10%) Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE 334 D V D + F F +LG Y Y L +G+ E + F R M Sbjct: 89 DFVRSLTDRAHAAKFRFATFLGAFKFYTSYALKSFDGT--EYLEGFEDRAVMTALTLAVG 146 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 E A + + + F +TPT N+G +L SCFL + DD+ I + L Sbjct: 147 DEALATAIVDEVIAGRFQPATPTFLNAGKASRGELVSCFLLRIEDDMESIGRGINSALQL 206 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 207 SKRGGGVALLLSNIREYGAPIKRIQNQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLS 266 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ + Sbjct: 267 AHHPDILRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEPMHLFSP---YDVERV 323 Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YGK F ++A + R+ + +I A ++ + + FE+G+P+I F+D N +P Sbjct: 324 YGKPFGDVAVSEHYREMVADDRIRKTQIDAREFFKTLAELQFESGYPYIVFEDTVNKANP 383 Query: 573 QQHVGVVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDK 620 G ++ SNLC+EI T ++ +E+ CNLGS+N+ D Sbjct: 384 I--AGRINMSNLCSEILQVNTPSTLAEDLTYSEIGKDISCNLGSLNIAL-----AMDGGN 436 Query: 621 LASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L ++ TAVR L V + + ++ N AIGLG M L + Y S E Sbjct: 437 LGQSVETAVRALTAVSVASDIQSVPSVAYGNSKSHAIGLGQMNLHGYLARERVHYGSEEG 496 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLA 730 ++ + + FHA+ AS +A ERG + F+ S + G F + + +A Sbjct: 497 IDFTNVYFAAVLFHALRASNAIAIERGETFEGFENSKYADGTFFDKYLENDFLPATERVA 556 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + + +R W +LK V G+ N N A+ PT +I+ I + SI P + Sbjct: 557 GLFADAGIALPTRAEWAQLKASVVEHGIFNQNLQAVPPTGSISYINNSTSSIHPIASKIE 616 Query: 791 V-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + K G F+ N+ N+E D A+ Sbjct: 617 IRKEGKLGRVYYPAPFMTND-----------------------NLEYYQD--------AY 645 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 646 EIGPEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIRIRQ- 704 Query: 909 TSVEKSTLKG 918 ++E + ++G Sbjct: 705 MALEGTEVEG 714 >gi|153801926|ref|ZP_01956512.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-3] gi|124122571|gb|EAY41314.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-3] Length = 670 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 188/686 (27%), Positives = 294/686 (42%), Gaps = 79/686 (11%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315 + +E+G + L E +L + + + RD F Y ++ L +YF+ + G E Sbjct: 17 KMVEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYE 76 Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 Q ++ VA L K KE R FY+ S+F TP + SG R P Q SS Sbjct: 77 SAQFLYILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSS 133 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 134 CVLIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKY 193 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 +QGG R GA + WH + E L L+ N G + R M+ + L Sbjct: 194 FQTAVKCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMY 253 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWR 547 KR+ + TLFSP +V L+D + + EFE Y YE IK + + A+ ++ Sbjct: 254 KRLVEGGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFT 309 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETA 598 ++ TG +I D CN SP V V SNLC EI L +S S E A Sbjct: 310 LLMQERASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIA 369 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +C L + NL A + D+++L+ + VR LD ++D + + A++S+ R +G+ Sbjct: 370 LCTLSAFNLGA--IESLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGV 424 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G++ + L + Y+ A + + E + +H + AS++LA+E+G F + + + Sbjct: 425 GVINYAYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAK 484 Query: 719 GVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G+ PID+ +D +L WD+L+ + G+RNS A+ P+ T + I Sbjct: 485 GLMPIDTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISN 539 Query: 778 VSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 + I+P + VK++ G VV F + LW ++ +DG Sbjct: 540 ATNGIEPPRGYVSVKASKDGILKQVVPEFTRLKENYELLW------NIGSNDGY------ 587 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFI 888 +H QK++DQA S N D PS KKL Sbjct: 588 -------LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQD 626 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKS 914 A+ G+KT YY +R E++ Sbjct: 627 LLTAYKFGVKTLYYHNTRDGAKDEQT 652 >gi|302595802|sp|P0CG99|RIR1A_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 1; AltName: Full=Ribonucleotide reductase R1 subunit 1 gi|302595803|sp|P0CH00|RIR1B_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 2; AltName: Full=Ribonucleotide reductase R1 subunit 2 Length = 722 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 182/668 (27%), Positives = 296/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +TE ++ V Sbjct: 98 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTELAEKLV 157 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 158 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 214 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 215 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 274 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 275 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 331 Query: 520 --IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y D I+ KI+A ++ + + FE+G+P+I F+D N +P G Sbjct: 332 DVSVTEKYYEMVDDARIRK-TKINAREFFQTLAELQFESGYPYIMFEDTVNRSNPI--AG 388 Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ E CNLGS+N+ D A TI Sbjct: 389 KITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTI 443 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 444 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIYYGSEEGIDFTN 503 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + FHA+ AS ++A ERG + F+ S + G F + E + + L + Sbjct: 504 IYFYTVLFHALRASNKIAIERGTHFKGFEKSKYASGEFFDKYTDQVWEPKTDKVRRLFAD 563 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 +P W +LK+ V+ G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 564 ADIHIPTQDDWKQLKESVQKHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRK-- 621 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +G IG + + +D + A+EI Sbjct: 622 --------------------------------EGKIGRVYYPAPYMTNDNLDYYQDAYEI 649 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 650 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 708 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 709 LEGTEVEG 716 >gi|225628772|ref|ZP_03786806.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti str. Cudo] gi|260167085|ref|ZP_05753896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. F5/99] gi|261756479|ref|ZP_06000188.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp. F5/99] gi|225616618|gb|EEH13666.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti str. Cudo] gi|261736463|gb|EEY24459.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp. F5/99] Length = 738 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 717 YIRLRQ-MALEGTQVQG 732 >gi|227876444|ref|ZP_03994556.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] gi|269976012|ref|ZP_06183016.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris 28-1] gi|306817403|ref|ZP_07451148.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus mulieris ATCC 35239] gi|307700430|ref|ZP_07637469.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris FB024-16] gi|227842985|gb|EEJ53182.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] gi|269935840|gb|EEZ92370.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris 28-1] gi|304649844|gb|EFM47124.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus mulieris ATCC 35239] gi|307614415|gb|EFN93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris FB024-16] Length = 733 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 185/661 (27%), Positives = 298/661 (45%), Gaps = 74/661 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y +F F +LG Y Y L +G R + F RV M E A + Sbjct: 112 YAHNFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALYLGRGDETLATDIME 169 Query: 345 LLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TPT N+G + ++ SCFL + D++ I L L+K GG+ Sbjct: 170 EIITGRYQPATPTFLNAGKKARGEMVSCFLVRIEDNMESIARGLNSALQLSKRGGGVALL 229 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S GV+P +K+ D NQ G R+GA YL +H D+ FL Sbjct: 230 LTNLREAGAPIKRIQNQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYLNAFHPDIMSFL 289 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522 D ++ D++ R ++ IPD+ + LFSP D+ +YG F EI+ Sbjct: 290 DTKRENADEKIRIKTLSLGVVIPDIAFELAKNKEPMYLFSP---YDIERVYGVPFSEISV 346 Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y D +I ++I A ++ + + FE+G+P+I ++D N +P G + Sbjct: 347 TEKYRELVDNPQIHK-KQIDARKFFQTLAEIQFESGYPYILYEDTVNRANPID--GRIVM 403 Query: 582 SNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI S + E CNLGS+N+ + F+ +IR A+ Sbjct: 404 SNLCSEILQVSEASELNPDLSYQKVGKDISCNLGSMNIAKTLDSPDFE-----QSIRVAI 458 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ N + ++ N A+GLG M L I Y SPE ++ + Sbjct: 459 RALTAVSDLTNVECVPTIQRGNAMSHAVGLGAMNLHGCLARHEIFYGSPEGLDFTNMYFY 518 Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNRTS 742 +F+A+ AS ELA ERG + F+ S + G + I A+VR+ A + + Sbjct: 519 ATAFYALKASHELAVERGQRFEGFERSQYATGEYFEKYINETWEPKTAKVREIFAQS-SV 577 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +LP W L + ++ GM N N AI PT +I+ I + SI P V S + Sbjct: 578 KLPTTEDWRRLAEAIQRDGMYNQNLQAIPPTGSISYINNSTASIHP------VASKI--- 628 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 ++ E I + Y + N D+L+ + A+EI +I+ Sbjct: 629 ---------------EIRKEGKIGRVYYPAPYMTN-----DNLE-YYQDAYEIGYEKIID 667 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + + +DQ SL L+ D + + ++ AW G+K+ YY+R R A ++E + ++ Sbjct: 668 TYAEATQHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQA-ALEGTEVE 726 Query: 918 G 918 G Sbjct: 727 G 727 >gi|118468034|ref|YP_886648.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118469666|ref|YP_885419.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118169321|gb|ABK70217.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium smegmatis str. MC2 155] gi|118170953|gb|ABK71849.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium smegmatis str. MC2 155] Length = 706 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 182/668 (27%), Positives = 296/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +TE ++ V Sbjct: 82 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTELAEKLV 141 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 142 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 198 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 199 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 258 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 259 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 315 Query: 520 --IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y D I+ KI+A ++ + + FE+G+P+I F+D N +P G Sbjct: 316 DVSVTEKYYEMVDDARIRK-TKINAREFFQTLAELQFESGYPYIMFEDTVNRSNPI--AG 372 Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ E CNLGS+N+ D A TI Sbjct: 373 KITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTI 427 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 428 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIYYGSEEGIDFTN 487 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + FHA+ AS ++A ERG + F+ S + G F + E + + L + Sbjct: 488 IYFYTVLFHALRASNKIAIERGTHFKGFEKSKYASGEFFDKYTDQVWEPKTDKVRRLFAD 547 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 +P W +LK+ V+ G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 548 ADIHIPTQDDWKQLKESVQKHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRK-- 605 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +G IG + + +D + A+EI Sbjct: 606 --------------------------------EGKIGRVYYPAPYMTNDNLDYYQDAYEI 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 634 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 692 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 693 LEGTEVEG 700 >gi|23500071|ref|NP_699511.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis 1330] gi|62317764|ref|YP_223617.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|83269750|ref|YP_419041.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis biovar Abortus 2308] gi|148558300|ref|YP_001257347.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis ATCC 25840] gi|161620389|ref|YP_001594275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis ATCC 23365] gi|225686157|ref|YP_002734129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis ATCC 23457] gi|256015099|ref|YP_003105108.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella microti CCM 4915] gi|260756871|ref|ZP_05869219.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 6 str. 870] gi|260760302|ref|ZP_05872650.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 4 str. 292] gi|260763542|ref|ZP_05875874.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260882685|ref|ZP_05894299.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 9 str. C68] gi|261215814|ref|ZP_05930095.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261216943|ref|ZP_05931224.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M13/05/1] gi|261313588|ref|ZP_05952785.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M163/99/10] gi|261319173|ref|ZP_05958370.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis B2/94] gi|261319813|ref|ZP_05959010.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M644/93/1] gi|261753310|ref|ZP_05997019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 3 str. 686] gi|265986824|ref|ZP_06099381.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M292/94/1] gi|265989660|ref|ZP_06102217.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265993238|ref|ZP_06105795.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|23463662|gb|AAN33516.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis 1330] gi|62197957|gb|AAX76256.1| NrdE, ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82940024|emb|CAJ13055.1| Ribonucleotide reductase large subunit:Prenyl group binding site (CAAX box) [Brucella melitensis biovar Abortus 2308] gi|148369585|gb|ABQ62457.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ovis ATCC 25840] gi|161337200|gb|ABX63504.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella canis ATCC 23365] gi|225642262|gb|ACO02175.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella melitensis ATCC 23457] gi|255997759|gb|ACU49446.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella microti CCM 4915] gi|260670620|gb|EEX57560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 4 str. 292] gi|260673963|gb|EEX60784.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260676979|gb|EEX63800.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 6 str. 870] gi|260872213|gb|EEX79282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 9 str. C68] gi|260917421|gb|EEX84282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260922032|gb|EEX88600.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M13/05/1] gi|261292503|gb|EEX95999.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M644/93/1] gi|261298396|gb|EEY01893.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis B2/94] gi|261302614|gb|EEY06111.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M163/99/10] gi|261743063|gb|EEY30989.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 3 str. 686] gi|262764108|gb|EEZ10140.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263000329|gb|EEZ13019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|264659021|gb|EEZ29282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M292/94/1] Length = 713 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 81 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 692 YIRLRQ-MALEGTQVQG 707 >gi|261220159|ref|ZP_05934440.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti B1/94] gi|265996494|ref|ZP_06109051.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M490/95/1] gi|260918743|gb|EEX85396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti B1/94] gi|262550791|gb|EEZ06952.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M490/95/1] Length = 713 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 81 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 692 YIRLRQ-MALEGTQVQG 707 >gi|320538994|ref|ZP_08038669.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia symbiotica str. Tucson] gi|320030927|gb|EFW12931.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia symbiotica str. Tucson] Length = 656 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 159/559 (28%), Positives = 251/559 (44%), Gaps = 35/559 (6%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315 R +E G +LL E + + + + RD F Y ++ L +Y + ++G E Sbjct: 2 RMVEMGKYDKLLLEDYSAEEFEQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYE 61 Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370 Q ++ VA L +E R FYN +S+F TP + SG R P Q SS Sbjct: 62 SAQFLYILVAACL-FSNYPRETRLDYVKRFYNAISTFKISLPTPIM--SGVRTPTRQFSS 118 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 119 CVLIECGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKH 178 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE L L+ N G + R M+ + L Sbjct: 179 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMY 238 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 +R+ + TLFSP +V L+ + EFE Y YE+ + +++ AV L+ Sbjct: 239 QRLIKGQDITLFSPSDVPGLYAAFFADQDEFERLYTEYEQDDSIRQ----KRVKAVELFS 294 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598 M+ TG +I D CN SP + V SNLC EI L N + E A Sbjct: 295 LMMQERASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIA 354 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +C L + NL +N D ++LA+ AVR LD ++D + I+ A + R +G+ Sbjct: 355 LCTLSAFNLGT--IDNLDDLEELAT---LAVRSLDALLDYQDYPIKAAHRGAMGRRTLGV 409 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G++ F L + Y+ A + ++ E I ++ + AS LAQE+GA F + + Q Sbjct: 410 GVINFAHYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETSYSQ 469 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ PID+ +V N W+ L++ ++ G+ NS A+ P+ T + I Sbjct: 470 GILPIDTYKKDLDV----ICNEPLHYDWETLRQEIQETGLSNSTLSALMPSETSSQISNA 525 Query: 779 SQSIDPSYQNLYVKSNMSG 797 + I+P ++ +K++ G Sbjct: 526 TNGIEPPRGHISIKASKDG 544 >gi|306840846|ref|ZP_07473593.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO2] gi|306289241|gb|EFM60490.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO2] Length = 738 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDADIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 717 YIRLRQ-MALEGTQVQG 732 >gi|310816081|ref|YP_003964045.1| ribonucleoside-diphosphate reductase, alpha subunit [Ketogulonicigenium vulgare Y25] gi|308754816|gb|ADO42745.1| ribonucleoside-diphosphate reductase, alpha subunit [Ketogulonicigenium vulgare Y25] Length = 718 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 187/646 (28%), Positives = 290/646 (44%), Gaps = 78/646 (12%) Query: 295 YLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 +LG Y Y L +G+R +E + + VA+ LA +R V+ +L+ F Sbjct: 106 FLGAFKYYTSYTLKTRDGNRYLERFEDRVVMVALALARGNEVLARRIVD--EVLTG-RFQ 162 Query: 353 CSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPT N+G + +L SCFL D++ I + L+K GG+ + +R G Sbjct: 163 PATPTFLNAGKKSRGELVSCFLLRFEDNMESIGRGINSALQLSKRGGGVALLLSNLREAG 222 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A I G +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D Sbjct: 223 APIKGIANQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENAD 282 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQA 529 ++ R ++ IPD+ + NA +FSP D+ + GK F +I+ E+Y Sbjct: 283 EKIRIKTLSLGVVIPDITFELAKNNADMYMFSP---HDVEKVTGKAFGDISISEHYYDFV 339 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 D I K+ A ++ + + FE+G+P+I F+D N +P G ++ SNLC+EI Sbjct: 340 DDPRIHK-TKMKARQFFQTLAEVQFESGYPYILFEDTANRANPID--GRINMSNLCSEIL 396 Query: 589 TLNSSS---EETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +NS S E+ CNLGS+N+ D + + TA+R L V + Sbjct: 397 QVNSPSVLNEDLTFADIGSDISCNLGSLNVA-----KVIDNGDIGVAVETAIRALTAVSE 451 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 ++ ++ + N AIGLG M L I Y SPEA++ ++FHAI+ Sbjct: 452 MSAIDSVPSVRAGNDRSHAIGLGQMNLHGFLARERIHYDSPEALDFTRAYFAAVAFHAIN 511 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRTSRLP 745 AS ++A ER + F+ S + G F P + EV ++ + S Sbjct: 512 ASNKIAVERNETFDGFEKSRYADGSFFDMYLEESFAPTSD--KVREVLEKFGVALPSVAD 569 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNS 804 W LK+RV G+ N N AI PT +I+ I + SI P + + K G Sbjct: 570 WGALKERVMKDGLFNRNLQAIPPTGSISYINHATASIHPVAAKVEIRKEGKIGRVYYPAP 629 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L NE N E D A+EI P +I+ + Sbjct: 630 YLTNE-----------------------NAEYYRD--------AYEIGPEAIIDLYAEAT 658 Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + +DQ SL L+ D + + ++ AW G+KT YY+R R A Sbjct: 659 RHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTIYYIRLRQAA 704 >gi|213965883|ref|ZP_03394074.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium amycolatum SK46] gi|213951461|gb|EEB62852.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium amycolatum SK46] Length = 717 Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 167/599 (27%), Positives = 275/599 (45%), Gaps = 78/599 (13%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT NSG + + SCFL + D++ I A+ + L+K GG+ + +R Sbjct: 160 FQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNLRE 219 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 220 QGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKREN 279 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYER 527 D++ R ++ IPD+ + +N LFSP D+ +YGK F ENY Sbjct: 280 ADEKIRIKSLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADINITENYAD 336 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + I+ +KI+A ++ + + FE+G+P+I F+D N +P + G ++ SNLC+E Sbjct: 337 MVEDPRIRK-QKINARQFFQTIAEIQFESGYPYIMFEDTVNRANPIE--GRINMSNLCSE 393 Query: 588 I-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I +N+ S E CNLGS+N+ D T+ TA+R L V Sbjct: 394 ILQVNTPSTYNADLSYEHVGEDISCNLGSLNIAM-----TMDSPDFGRTVETAIRGLTAV 448 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + + ++ +K N AIGLG M L I Y S E ++ + + + Sbjct: 449 SEQTSIDSVPSIRKGNDGSHAIGLGQMNLHGYLGREKIMYGSEEGLDFTNAYFAAVLYAV 508 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLP--- 745 + AS ++A+ERG + +F+ S + G + P + V+ E+ N T+ +P Sbjct: 509 LRASNKIARERGQKFVNFENSDYASGKYFDNFDPAEFQPKTQHVK-EIFENSTAHIPDAE 567 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W +LK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 568 DWAQLKADVMEYGLFNRNLQAVPPTGSISYINNSTSSIHPIASQIEIRK----------- 616 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESA 860 +G IG + + +D ++ A+EI +I++ Sbjct: 617 -----------------------EGKIGRVYYPAPHLDNDNREYFQDAYEIGYEKIIDTY 653 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + K++DQ SL L+ D S + L+ AW G+KT YY+R R ++E + ++G Sbjct: 654 AVATKYVDQGLSLTLFFKDTVSTRDLNRAQIYAWRKGIKTLYYIRLRQ-VALEGTEVEG 711 >gi|304373443|ref|YP_003856652.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyorhinis HUB-1] gi|304309634|gb|ADM22114.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyorhinis HUB-1] gi|330723640|gb|AEC46010.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyorhinis MCLD] Length = 721 Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 178/659 (27%), Positives = 297/659 (45%), Gaps = 89/659 (13%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 KY+ F ++G Y Y L N S+ E + F R + +RA Sbjct: 96 KYKHHFP-SFMGALKFYSSYALKSNDSQ-EYLEHFQERALLNALFLAKGNSERASSILRQ 153 Query: 346 LSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + F +TPT N+G ++ + SC+L + D++ I A+ + L+K GG+ Sbjct: 154 IMLGRFQPATPTFLNAGKKNRGEYVSCYLIRIEDNMESISRAVTTSLQLSKRGGGVSILL 213 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R +GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD Sbjct: 214 SNLREMGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILSFLD 273 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521 ++ D++ R ++ IPD+ + N LFS V D+ Y K F I Sbjct: 274 TKRENADEKIRIKSLSLGVVIPDITFELAKDNKDMALFS---VYDVEREYKKAFSDISIT 330 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+ + K F I+A L+ + + FE+G+P+I F D N R+ ++ V+ Sbjct: 331 QEYYKMLENPNIKKNF--INARKLFTTIAELHFESGYPYILFDDTVNRRNAHKNRIVM-- 386 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI S+ E CNLGS+N+ + + + + A+ Sbjct: 387 SNLCSEIVQPSTPSEYLPDLTFTKKGEDICCNLGSLNIDKAMESGK----EFGELVYQAI 442 Query: 630 RVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 LD+V + +IE NH A+GLG M L HI Y S EA++ + Sbjct: 443 VSLDHVSRTSDLSSAPSIENGNNKNH---AVGLGAMNLHGFLATNHIYYDSKEALDFTNI 499 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-----------LAEVRD 734 +++HA +S LAQ+ GA+ FK S + G + + + EV + Sbjct: 500 FFYTMAYHAFKSSSILAQKFGAFEHFKESKFADGSYFDKYTKVSEKEYQPKTQKIKEVFE 559 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + + ++ W EL + +K +G+ NS+ MA+APT +I+ + + S+ P Sbjct: 560 KYQVTIPTKQDWIELVENIKRVGIANSHLMAVAPTGSISYLSSCTPSLQP---------- 609 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATA 848 +V ++ R +G IG + +P +++K A Sbjct: 610 -----------VVAPVETRK-------------EGKIGRV-YVPAYKMNQENMKFYSLGA 644 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +E+ P +I+ A+ QK IDQ+ SL L+L D + + L+ Y +A+ G + YY+R R Sbjct: 645 YELGPDPIIDIAAEAQKHIDQSISLTLFLKDTATTRDLNKAYIRAFKKGCGSIYYVRIR 703 >gi|312173338|emb|CBX81593.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora ATCC BAA-2158] Length = 716 Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 176/644 (27%), Positives = 290/644 (45%), Gaps = 67/644 (10%) Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 R F F+ +LG Y Y L +G R ++F RV M + A+ + + Sbjct: 97 RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLESFTERVCMVALTLAKGDQPLALALADEI 154 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D++ R ++ IPD+ + N LFSP +V ++ L + I+ + + Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQQMALFSPYDVELIYALPFADISISEKYH 334 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E AD + F I+ ++ + + FE+G+P+I F+D N +P G ++ SNLC Sbjct: 335 EMLADTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 390 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N+ +E + CNLGS+N+ AH D A T+ AVR L Sbjct: 391 SEILQVNTPTEYNDDLSYRHIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGLT 445 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + H++ ++ N AIGLG M L I Y S ++ + +++ Sbjct: 446 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIEYGSEAGLDFTNIYFYTVTY 505 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSR 743 HA+ S +LA+ER +S F S + G + +G +A + + + ++ Sbjct: 506 HALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQRWQPRTAQVAALFAKAGIEIPTQ 565 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W LK+ V G+ N N AI PT +I+ I + SI P Sbjct: 566 QQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------- 606 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +V+ ++ R + Y+ N +D + + A++I P +I++ + Sbjct: 607 --IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQAFYRDAYDIGPEAIIDTYAEA 655 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 656 TRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699 >gi|284009250|emb|CBA76358.1| ribonucleoside-diphosphate reductase alpha chain [Arsenophonus nasoniae] Length = 709 Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 185/660 (28%), Positives = 294/660 (44%), Gaps = 72/660 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y F F+ +LG Y Y L +G R +E + VA+ LA E A + Sbjct: 88 YNHKFRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMVALTLAQGNQE---LASQLV 144 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 N + S F +TPT N G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 145 NEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAF 204 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ F Sbjct: 205 LLTNLREAGAPIKLIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILSF 264 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ N LFSP ++ + + E I Sbjct: 265 LDTKRENADEKIRIKTLSLGVVIPDITFHLAKNNQDMYLFSPYDIERCYGVPMSEIAIT- 323 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y + I+ +KI+A + + + FE+G+P+I F+D N +P G ++ S Sbjct: 324 EKYSEMVNNKNIRK-QKINAREFFLTLAEIQFESGYPYILFEDNANRLNPI--YGRINMS 380 Query: 583 NLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI +N +S + CNLGS+N+ D A +I A+R Sbjct: 381 NLCSEILQVNDASIYDENLDYRHVGKDISCNLGSMNIA-----KTMDSPNFAHSIEIAIR 435 Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D++ ++ ++ N AIGLG M L HI Y S E ++ + Sbjct: 436 ALTAVSDMSQIQSVPSIQEGNKKSHAIGLGQMNLHGYLAREHIYYGSEEGIDFTNIYFYT 495 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRL 744 ++++A+ AS +LA ER A+S F S + G + I + + E L + Sbjct: 496 VTYYALQASNKLAIERQHAFSGFAHSKYASGEYFEKYINQQWQPKTEKIKQLFQRSAIHI 555 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 P W +LK+ + G+ N N AI PT +I+ I + SI P + + K G Sbjct: 556 PTCEDWQQLKQSIMEHGIYNQNLQAIPPTGSISYINHSTSSIHPIVARIEIRKEGKIGRV 615 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +L NE N+E D A++I +I++ Sbjct: 616 YYPAPYLTNE-----------------------NLEYYQD--------AYQIGAEKIIDT 644 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D+ + + ++ AW G+KT YY+R R +T +E + +KG Sbjct: 645 YAAATQHVDQGLSLTLFFTDDATTRDINRAQIYAWKKGIKTLYYIRIRQST-LEGTEVKG 703 >gi|317506845|ref|ZP_07964617.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] gi|316254773|gb|EFV14071.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] Length = 728 Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 188/693 (27%), Positives = 305/693 (44%), Gaps = 85/693 (12%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310 PE RY E VK D Y + F F +LG Y Y L + Sbjct: 88 PEVLGRYSREFVKGLF---------------DQAYAKKFRFPTFLGAFKYYTSYTLKTFD 132 Query: 311 GSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQL 368 G R +E + + VA+ LA + E + VE + F +TPT N G + + Sbjct: 133 GKRYLERFEDRVVMVALALADGDEELASQLVE---EIIEGRFQPATPTFLNCGKKQRGEP 189 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I ++ L+K GG+ T +R GA I +S GVIP + Sbjct: 190 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVM 249 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 250 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDI 309 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + +N LFSP +V ++ + E + E Y D I+ +KI+A ++ Sbjct: 310 TFELAKRNDDMYLFSPYDVERVYGVPFAEVSVT-EKYFEMVDDERIRK-KKINAREFFQT 367 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-- 599 + + FE+G+P+I ++D N +P G + SNLC+EI T N+ + + Sbjct: 368 IAELQFESGYPYIMYEDTVNRANPID--GRITHSNLCSEILQVSTASTFNADLSYSHIGK 425 Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D T+ T++R L +V D ++ + N A Sbjct: 426 DISCNLGSLNIA-----KTMDSPDFGRTVETSIRALTSVSDQTRIDSVPSIAEGNEQSHA 480 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714 IGLG M L I Y S E ++ + + +HA+SAS ++A ERG A++ F+ S Sbjct: 481 IGLGQMNLHGYLARERIHYGSEEGIDFTNIYFYTVLYHALSASNKIAIERGRAFTGFERS 540 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAI 766 + G F + E + E R +P W LK+ V+ G+ N N A+ Sbjct: 541 KYASGEFFEKYLTQSWEPKTERVRELFERAGVAIPTVADWQRLKESVQAHGIYNQNLQAV 600 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ E I + Y Sbjct: 601 PPTGSISYINHSTSSIHPVAAKIEIRK------------------------EGKIGRVYY 636 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 + N D+L+ + A+EI +I++ + + +DQ SL L+ D + + + Sbjct: 637 PAPYLAN-----DNLE-YYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDI 690 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + AW G+KT YY+R R ++E + ++G Sbjct: 691 NKAQIYAWRKGIKTLYYIRLRQ-LALEGTEVEG 722 >gi|154415929|ref|XP_001580988.1| Ribonucleotide reductase, all-alpha domain containing protein [Trichomonas vaginalis G3] gi|121915211|gb|EAY20002.1| Ribonucleotide reductase, all-alpha domain containing protein [Trichomonas vaginalis G3] Length = 614 Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 167/626 (26%), Positives = 278/626 (44%), Gaps = 60/626 (9%) Query: 293 FEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 F ++++ RY +H ++ E P+ F RVA LA ET+KEK +F ++ +F F Sbjct: 20 FTSNAIKVMKARYLVHNEEGKVYETPEQMFTRVAKALASVETDKEKWTKKFEKVMMNFEF 79 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + + TL N+G + +S+C + + D L IF LQ+ A+L + G+G + +R G Sbjct: 80 IPAGRTLANAGAKTDLVSNCVVLHMEDSLDSIFQTLQDAALLQQAGSGIGFPFHKLRPAG 139 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 T G S G + FL++ + + Q G R GA A + H D+ EF+ ++ G Sbjct: 140 YKCKRTLGSSSGPLSFLRIYAEAFRIIQQHG-RHGANMAIMRVDHPDIIEFIHAKEQPGT 198 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + N + D FM+RV +N D + G++ Y + A R Sbjct: 199 ----YENFNFSVAFTDEFMERVIKN--------DPSPWMCKWNGEKMAPRYITRD-AAGR 245 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 E ISA L +++ + + G P F D N +P +G + N C E L+ Sbjct: 246 VENIQPLTISAPELMNEIIHLAWTNGEPGCVFIDTVNKANPLPGLGPIECCNPCGEQFLH 305 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 S CNLG+INL + + D+ L RTA+R+LDNV+ + +++ Sbjct: 306 SGD----ACNLGAINLEKFVVDGKIDFKHLEEVTRTAIRMLDNVVSLTKFPVQRVTDMFT 361 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+MG L L+ +PY S E A+E M+ + AI S L E+G++ +F Sbjct: 362 NNRRIGLGIMGLADLLFLMKLPYDSEEGRACAEEVMKCVQDSAIDESKRLGLEKGSFPNF 421 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + S+W K MRN++ +APT + Sbjct: 422 EKSVWAD-----------------------------------KVPAMRNTSLTNVAPTGS 446 Query: 772 IANICGVSQSIDPSYQNLYVKSN-MSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + VS ++P + Y + N ++G VN L L+ + + I D G Sbjct: 447 TSMLLDVSSGVEPYFALAYRRGNCLAGPMKPFVNKHLQKALEDCGCFTDK-IMDKILETG 505 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888 ++ N+ +P+ L+++ T+ +I I +R QK A S + + E + + Sbjct: 506 TLANVTEVPEQLRRVFVTSLDIKAEDHIAMQARVQKHCCNAISKTINFRREATEDDVRAG 565 Query: 889 YRQAWLMGLK--TTYYLRSRSATSVE 912 + + W G K T Y SR A +E Sbjct: 566 FIEGWKNGCKGLTVYRNGSRDAQVLE 591 >gi|296171153|ref|ZP_06852601.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894289|gb|EFG74044.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 721 Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 182/663 (27%), Positives = 296/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 97 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 156 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 157 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 213 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 214 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 273 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L + Sbjct: 274 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 333 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 334 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPIE--GKI 389 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 390 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 444 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 445 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIY 504 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRT 741 + +HA+ AS +A ERG A+ F+ S + G F + E + +L + Sbjct: 505 FYTVLYHALRASNRIAIERGKAFGGFERSKYKSGEFFDKYTDQVWEPQTDKVRQLFADAE 564 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 565 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEGKI 624 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G ++ N+ N+E D A+EI + Sbjct: 625 GRVYYPAPYMTND-----------------------NLEYFQD--------AYEIGYEKV 653 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 654 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 712 Query: 916 LKG 918 ++G Sbjct: 713 VEG 715 >gi|153010277|ref|YP_001371491.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|151562165|gb|ABS15662.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 739 Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 181/658 (27%), Positives = 295/658 (44%), Gaps = 69/658 (10%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y + F F +LG Y Y L +G R +E + VA+ LA Sbjct: 107 FNFVRDLFDEAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARG- 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 --NEQLARNLMEEIIAGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 223 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 224 QLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 283 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 284 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVERVY 343 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E I E Y D I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 344 GVPLTEISIT-EKYRELVDDARITK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 401 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ + ++ F Sbjct: 402 PID--GRITMSNLCSEILQVSEASIFGEDLSYDHLGKDISCNLGSLNIASAMDSSDF--- 456 Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 TI T++R L V D++ ++ + N AIGLG M L I Y S E Sbjct: 457 --GKTIETSIRALTAVSDMSQIGSVPSVARGNDESHAIGLGQMNLHGYLARERIYYGSEE 514 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL-------- 729 V+ + +++HAI AS +A E G ++ F+ S + G + L Sbjct: 515 GVDFTNIYFYTVTYHAIRASNLIAVETGKSFKGFEKSKYATGEYFAKYTEQLWEPATQKV 574 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 E+ ++ + ++ W +LK V G+ N N A+ PT +I+ I + SI P Sbjct: 575 REIFEKAGIAIPTQDDWRDLKNAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP----- 629 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +V++++ R E I + Y + N D+L + A+ Sbjct: 630 ----------------IVSKIEIRK---EGKIGRVYYPAAFMTN-----DNLD-YYQDAY 664 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 665 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLR 722 >gi|311993226|ref|YP_004010092.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31] gi|284178064|gb|ADB81730.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31] Length = 751 Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 199/791 (25%), Positives = 334/791 (42%), Gaps = 86/791 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ GT F ++L ++E C + V + ++ DG++ D++ A Sbjct: 1 MKVIKSSGTSQEFTPEKLIKVLEWGCENTR-VDPYELYQAIVPHLQDGMTTYDIQRAATK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + ++I +EP+Y V + + LR++V P F I G Sbjct: 60 VAASMISIEEPDYQYVASNLAMFNLRKQVYGQ---------------FEPRSFIDQISFG 104 Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317 V + ++ ++ L + + ++RDF Y G L ++Y + G IE P Sbjct: 105 VNHNKYDKEVLAKWSAEEIALLESKIVHDRDFEMTYAGTMQLIEKYLVKDRSTGQIIETP 164 Query: 318 QAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 Q FM + G+ L + + E R + FY+ +S+ TP + + T Q SSC + Sbjct: 165 QFAFMLI--GMTLHQDDGENRLVNTIRFYDAVSTKKISLPTPIMAGARTPTRQFSSCVVI 222 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I + + G+G + +R G+ I K GVIPF K Sbjct: 223 EAGDSLKSINKSAESIVEYISKRAGIGINAGMIRAEGSKIGFGEVKHTGVIPFWKHIQTA 282 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA Y WH++VE L L+ N G D R ++ I DL +R+ Sbjct: 283 VKSCSQGGVRGGAATLYYPIWHLEVENLLVLKNNKGVDENRIRHLDYGVQINDLMFERLI 342 Query: 495 QNAGWTLFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ TLFSPD + L++ Y K+ E YE +++ +++ A L LT Sbjct: 343 KDDYITLFSPDIDAGRLYENYFKDAAAFREQYEALEKNPDVRK-KRVKARELIELFLTER 401 Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLN-----SSSEETAVCNLGSINL 607 T + F D P + V + SNLC EI L S E A+C L + + Sbjct: 402 SGTARIYPYFVDNVGDYGPFIRDVATIKQSNLCAEIALPTKDVYSEDAEIALCTLSAF-V 460 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 L +F + D + + VR LDN++ + +++A K+ RA+G+G+ + + L Sbjct: 461 LGNF--DWQDQETINELAEVQVRALDNLLSYQGYPVKEALKA-LKRRALGVGVTNYAAWL 517 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 YA +A ++ E E + + I AS++LA+E+G +K + W +G PID Sbjct: 518 ADNFATYA--DANDLTHELFERLQYALIKASIKLAKEKGPCEYYKDTRWSRGELPID--- 572 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + D+LA W+ L+ +K G+RNS A+ P + + + + I+P Sbjct: 573 WYNKRIDQLAAPNYV-CDWEALRAELKQYGIRNSTLSALMPCESSSQVSNSTNGIEPPRG 631 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + +K + G F N + N DL+D A ++ K + T Sbjct: 632 PVSIKESKEGSF---NQVVPNVELNADLYDYAW---------------KLAKQGNKPYLT 673 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL---------DFIYRQAWLMGLK 898 I KW+ Q+ S N Y D + +K D +Y W G K Sbjct: 674 QVAI-----------MLKWVCQSASANTYYDPQNYEKGKVPMSVMMDDLLY--FWYFGGK 720 Query: 899 TTYYLRSRSAT 909 T YY +R + Sbjct: 721 TLYYHNTRDGS 731 >gi|323143006|ref|ZP_08077712.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas hippei YIT 12066] gi|322417200|gb|EFY07828.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas hippei YIT 12066] Length = 591 Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 185/632 (29%), Positives = 285/632 (45%), Gaps = 102/632 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +D F+ LG+ L + Y S PQ F V+ ++KE A Y+ S Sbjct: 9 KDNLFDDLGITRLKESYMRPEEKS----PQERFAFVSETFG---SDKE-HAQRIYDYASR 60 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 STP L T SCFL+ + D G+ L E L+ G Sbjct: 61 HWLSFSTPILSFGRTSQGLPVSCFLSYMEDSADGLIETLSEVNRLSMLGG--------GI 112 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+ I + KS GV+P LK+ + +A QG R+G+ A+L+ H D+ F+++RK Sbjct: 113 GIHLGIRSADEKSVGVMPHLKIYDAACLAYRQGTTRRGSYAAFLDISHPDIIPFIEMRKP 172 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYGKEFEIA 521 TGD RT +++ I D FM+++T+ + W L P Sbjct: 173 TGDQNMRTLNLHHGINISDAFMQKITKCMQDDNADDSWQLIDPHSK-------------- 218 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575 K+ +SA LW+++L + +TG P++ F D P +++ H Sbjct: 219 -------------KIIETVSARDLWQRILELRMQTGEPYLIFTDTAEKALPHWLKTKNLH 265 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 + + SNLCTEI L ++ + TAVC L S+NL +F + D + + VL Sbjct: 266 I---NGSNLCTEIFLPTNEQRTAVCCLSSLNL-EYFDEWRHDSQFIDDVMEFLDNVLQYF 321 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I+ ++I++AK S R++GLG +GF S L IP+ S A I + F I Sbjct: 322 IEHAPNSIKRAKLSAFKERSVGLGALGFHSYLQKKGIPFESVIAKSINKQ-----IFSHI 376 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ELA +R + +G D D M R S W Sbjct: 377 RQCCELADKR--LCALRGPCPD--------------ASDAGVMRRFSH--W--------- 409 Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 MAIAP A+ + I G S SI+P N+Y + +SG + N L LK+ + Sbjct: 410 --------MAIAPNASSSLIVGNTSPSIEPRRANVYRQDTLSGAYITKNRHLQQALKELN 461 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 L E + +D+ HDGS+ +++ +P ++ + TA EID ++I+ A+ RQ++IDQ QS+N Sbjct: 462 LDTEEIWTDIIAHDGSVQHLDILPQQIRDVFKTAQEIDQRFIIDLAADRQQFIDQGQSVN 521 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 L+ + S K L + AW GLK+ YY RS Sbjct: 522 LFFPADVSIKYLHACHYLAWKKGLKSLYYCRS 553 >gi|162420596|ref|YP_001607866.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Angola] gi|162353411|gb|ABX87359.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis Angola] Length = 716 Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 186/696 (26%), Positives = 313/696 (44%), Gaps = 91/696 (13%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + + + DF + Y + F F +LG Y Y L +G R +E Sbjct: 69 IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA T + A E + S F +TPT N G + +L SCFL Sbjct: 128 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP ++ ++ + E I+ E Y D I+ KI A ++ + + FE Sbjct: 305 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 362 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +N+ +E + CNLG Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLG 420 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ D +I A+R L V ++ N ++ +K N AIGLG M Sbjct: 421 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVTSIEKGNQESHAIGLGQMN 475 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y S EA++ + +++HAI AS +LA ER S FKG +D+ + Sbjct: 476 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERA--SHFKG--FDESDYA 531 Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767 S ++ ++ +T+R+ W L++ V G+ N N A+ Sbjct: 532 --SGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVP 589 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ I + SI P +V+ ++ R Sbjct: 590 PTGSISYINHSTSSIHP---------------------IVSPIEIR-------------K 615 Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 +G IG + + +D + + A++I P +I++ + + +DQ SL L+ D + Sbjct: 616 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + ++ AW G+KT YY+R R ++E + ++G Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710 >gi|33620590|ref|NP_891805.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49] gi|33348057|gb|AAQ15458.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49] Length = 747 Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 209/799 (26%), Positives = 346/799 (43%), Gaps = 108/799 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205 ++ G + F +++ I+E A G +V + + +G+S +D++ LI + Sbjct: 5 VVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKVA 63 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + + P+Y V + + LR+ +VY + Q + + R I G Sbjct: 64 ADNITVETPDYQYVASNLAMFALRK----SVYGQFQPIDFYS-------HIERNIATGKY 112 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 R + + ++ YL + ++ DF Y G L ++Y + ++ IE PQ +M Sbjct: 113 DREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYML 172 Query: 324 VAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDL 380 + M L +ETE + ++FYN +++ TP + +G R P Q SSC + D L Sbjct: 173 IGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIM--AGVRTPTRQFSSCVVIESDDSL 230 Query: 381 YGIFGALQENAMLAKYS--GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 GI NA++ S G+G + +R G+ I + GVIPF K + Sbjct: 231 QGINET--ANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSC 288 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E + L+ N G + R ++ I +L ++R + Sbjct: 289 SQGGIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDY 348 Query: 499 WTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 TLFSPD L DLY ++ E + YE+ ++ R + A L+ + F TG Sbjct: 349 ITLFSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERFNTG 407 Query: 558 HPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS-----SEETAVCNLGSINLLAHF 611 + TF D N ++V + SNLC EI L + E ++C LA + Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCT------LAAY 461 Query: 612 ANNQFDYDKLASTIRTA---VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 FD + + R A VR LDN++D + +E+A + R++G+G+ F S L Sbjct: 462 VLGNFDIENMEEVERIAMVMVRALDNLLDYQDYPVEQALTAKK-RRSLGVGVTNFASYLA 520 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 Y +A E ++ E + + I ASV+LA+E+GA + + +G PID Sbjct: 521 DNFFTYE--DANEFTHKTFERLQYALIKASVQLAKEKGACELMHETRYGRGELPID---W 575 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + DEL ++ + W+EL+K +K G+RNS A+ P + + + + I+P Sbjct: 576 YKKTVDEL-VDPVYEMDWEELRKDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGI 634 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK + G F V I N+E D Sbjct: 635 VSVKGSKEGQFNQV----------------------------IPNVENNAD--------- 657 Query: 849 FEIDPMW-LIESASR--------RQKWIDQAQSLNLYLDEPSGKKL----------DFIY 889 ID +W LI+ ++ QK++DQA S N D PS K D ++ Sbjct: 658 -VIDLLWTLIKKGNKPYLTLAAIMQKFVDQAISSNTSYD-PSTYKTGKVDIADVLDDMLF 715 Query: 890 RQAWLMGLKTTYYLRSRSA 908 Q + GLKT YY R Sbjct: 716 AQYY--GLKTLYYANVRDG 732 >gi|120403036|ref|YP_952865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium vanbaalenii PYR-1] gi|119955854|gb|ABM12859.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium vanbaalenii PYR-1] Length = 722 Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 184/653 (28%), Positives = 292/653 (44%), Gaps = 75/653 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F ++G Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 98 DRAYAKKFRFPTFVGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDTTLAEKLV 157 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 158 D---EIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 214 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 215 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 274 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 275 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 331 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I ++D N +P G Sbjct: 332 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPID--G 388 Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ E CNLGS+N+ D A TI Sbjct: 389 KITHSNLCSEILQVSTPSEFNDDLSYKKIGKDISCNLGSLNIA-----KAMDSPDFAQTI 443 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 444 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGVDFTN 503 Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG A+ F+ S + G F + E + +L + Sbjct: 504 IYFYTVLYHALRASNRIAIERGTAFKGFEKSKYASGEFFDKYTEQVWEPKTDKVRQLFTD 563 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794 R+P W +LK+ V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 564 AGIRIPNQDDWKQLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEG 623 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ NE N+E D A+EI Sbjct: 624 KIGRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGYE 652 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I++ + + +DQ SL L+ D + ++++ AW G+KT YY+R R Sbjct: 653 KVIDTYAAATQHVDQGLSLTLFFKDTATTREVNKAQIYAWRKGIKTLYYIRLR 705 >gi|51597272|ref|YP_071463.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|153949726|ref|YP_001400044.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|186896376|ref|YP_001873488.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|51590554|emb|CAH22195.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pseudotuberculosis IP 32953] gi|152961221|gb|ABS48682.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis IP 31758] gi|186699402|gb|ACC90031.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis PB1/+] Length = 716 Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 186/696 (26%), Positives = 313/696 (44%), Gaps = 91/696 (13%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + + + DF + Y + F F +LG Y Y L +G R +E Sbjct: 69 IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA T + A E + S F +TPT N G + +L SCFL Sbjct: 128 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP ++ ++ + E I+ E Y D I+ KI A ++ + + FE Sbjct: 305 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 362 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +N+ +E + CNLG Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRHIGKDISCNLG 420 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ D +I A+R L V ++ N ++ +K N AIGLG M Sbjct: 421 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMN 475 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y S EA++ + +++HAI AS +LA ER S FKG +D+ + Sbjct: 476 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERA--SHFKG--FDESDYA 531 Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767 S ++ ++ +T+R+ W L++ V G+ N N A+ Sbjct: 532 --SGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVP 589 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ I + SI P +V+ ++ R Sbjct: 590 PTGSISYINHSTSSIHP---------------------IVSPIEIRK------------- 615 Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 +G IG + + +D + + A++I P +I++ + + +DQ SL L+ D + Sbjct: 616 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + ++ AW G+KT YY+R R ++E + ++G Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710 >gi|56694762|ref|YP_164482.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 2] gi|52843314|gb|AAU88105.1| large subunit of ribonucleotide reductase [Cercopithecine herpesvirus 2] Length = 975 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 184/656 (28%), Positives = 292/656 (44%), Gaps = 72/656 (10%) Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------E 341 GLQ + Y+ ++L I+G +E + R+A LA + ++ R V Sbjct: 333 GLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACR-SDLAGRVVFGRDASWLEMFTY 391 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-----TVPDDLYGIFGALQENAMLAKY 396 F+N + + STP + GTR P SSC+L T L I Q+ A + Sbjct: 392 FFNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAI---TQDVAPILAR 448 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 SGG+G L + ++P LK + A N R V YLE WH Sbjct: 449 SGGIG--------LCLQSFNDRPGNASIMPALKALDSIVAAYNDQSLRPTGVTVYLEPWH 500 Query: 457 IDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSD 509 D+ L ++ G++ RR ++ +A W+PDLF KR+ ++ WTLFS Sbjct: 501 SDIMAVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKDVVWTLFSNRGGMH 560 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 L +G+EFE Y E Q GE + + A A+ R T TG P++ FKD N Sbjct: 561 LSSFHGEEFEKLYLCQEEQG-FGEAVPIQDV-AYAIVRAAAT----TGSPFVMFKDAVNR 614 Query: 570 RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 G + SNLCTEI ++++++ VCNL S+NL FD+ +L ++R Sbjct: 615 HYIYDTQGSAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFSRLRESVRAC 674 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 V +++ +ID + ++ + R++G+G+ G +A L + AS E E+ E Sbjct: 675 VLMVNIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKLGLDLASEEFRELNRHIAE 734 Query: 689 FISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLP 745 + A+ AS L GA + FK S++ G F + G E Sbjct: 735 VMLLAAMQASNALCLH-GARPFREFKRSVFRAGRFHWEGFPGARPRYEGE---------- 783 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L++ + G+RNS +A+ PT A + VS+ P + N++ K G+ N+ Sbjct: 784 WERLRQSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTL 843 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESA 860 L+ EL++ + L D ++ER L H TAF+ D LI+ Sbjct: 844 LLRELRE-TFSGRRLNEVLDGLDAKQWSVERALPCLAADHPLRRFKTAFDYDQELLIDLC 902 Query: 861 SRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 + R ++D +QS+ LY+ E + L + A+ GLKT YY + R AT+ Sbjct: 903 ADRAPYVDHSQSMTLYVTERADGTLPASALVRLLAHAYKRGLKTGMYYCKVRKATN 958 >gi|50122259|ref|YP_051426.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49612785|emb|CAG76235.1| ribonucleoside-diphosphate reductase 2 alpha chain [Pectobacterium atrosepticum SCRI1043] Length = 715 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 191/692 (27%), Positives = 316/692 (45%), Gaps = 78/692 (11%) Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313 RY +EEG +A +L + FD + Y F F+ +LG Y Y L +G R Sbjct: 65 RYLVEEGYYEAEVLDQ--YHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 122 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371 +E + VA+ LA +T A + + S F +TPT N G + +L SC Sbjct: 123 YLERYEDRVCLVALALAKGDT---TLASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 179 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 180 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 239 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 240 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 299 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N LFSP +V ++ + E + E Y + I+ +I A ++ + Sbjct: 300 LAKNNQVMYLFSPYDVEQVYGVPLSEISVT-EKYHEMVNDKRIRK-SQIKARDFFQILAE 357 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599 + FE+G+P++ F+D N +P G ++ SNLC+EI +N +S + Sbjct: 358 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKDIS 415 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ A+ F T+ A+R L V D+ + ++ +K N AIGL Sbjct: 416 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAIGL 470 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717 G M L I Y + EAV+ + ++FHAI AS LA ER +S F+ S + Sbjct: 471 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 530 Query: 718 QGVF----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 G + PI + E+ ++ ++ ++ W L++ V G+ N N A+ Sbjct: 531 TGEYFDKYIEQQWEPITARA--RELFEQAGIHIPNQQDWAALRESVIAHGIYNQNLQAVP 588 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ I + SI P +V+ ++ R E I + Y Sbjct: 589 PTGSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYP 624 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 + N D+L+ + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 625 APYMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 678 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 679 KAQIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 709 >gi|149365456|ref|ZP_01887491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis CA88-4125] gi|218929726|ref|YP_002347601.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis CO92] gi|115348337|emb|CAL21270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis CO92] gi|149291869|gb|EDM41943.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis CA88-4125] Length = 693 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 185/686 (26%), Positives = 310/686 (45%), Gaps = 71/686 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + + + DF + Y + F F +LG Y Y L +G R +E Sbjct: 46 IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA T + A E + S F +TPT N G + +L SCFL Sbjct: 105 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 281 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP ++ ++ + E I+ E Y D I+ KI A ++ + + FE Sbjct: 282 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +N+ +E + CNLG Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLG 397 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ D +I A+R L V ++ N ++ +K N AIGLG M Sbjct: 398 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMN 452 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721 L + Y S EA++ + +++HAI AS +LA ER + + F S + G F Sbjct: 453 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAF 512 Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 I + + + + ++ W L++ V G+ N N A+ PT +I+ Sbjct: 513 FSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSIS 572 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P +V+ ++ R E I + Y + N Sbjct: 573 YINHSTSSIHP---------------------IVSPIEIR---KEGKIGRVYYPAPYMTN 608 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 D+L + + A++I P +I++ + + +DQ SL L+ D + + ++ A Sbjct: 609 -----DNL-EYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYA 662 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKG 918 W G+KT YY+R R ++E + ++G Sbjct: 663 WKKGIKTIYYIRLRQ-MALEGTEVEG 687 >gi|22125125|ref|NP_668548.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis KIM 10] gi|45442236|ref|NP_993775.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|108808371|ref|YP_652287.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Antiqua] gi|108811298|ref|YP_647065.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Nepal516] gi|145598905|ref|YP_001162981.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Pestoides F] gi|165925303|ref|ZP_02221135.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939924|ref|ZP_02228462.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008354|ref|ZP_02229252.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212442|ref|ZP_02238477.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167398490|ref|ZP_02304014.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421233|ref|ZP_02312986.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423147|ref|ZP_02314900.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468721|ref|ZP_02333425.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis FV-1] gi|170023363|ref|YP_001719868.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis YPIII] gi|229838203|ref|ZP_04458362.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895451|ref|ZP_04510623.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Pestoides A] gi|229898685|ref|ZP_04513830.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901544|ref|ZP_04516666.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Nepal516] gi|270489730|ref|ZP_06206804.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294504448|ref|YP_003568510.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|21957984|gb|AAM84799.1|AE013726_2 ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis KIM 10] gi|45437100|gb|AAS62652.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis biovar Microtus str. 91001] gi|108774946|gb|ABG17465.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Yersinia pestis Nepal516] gi|108780284|gb|ABG14342.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Yersinia pestis Antiqua] gi|145210601|gb|ABP40008.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Yersinia pestis Pestoides F] gi|165912143|gb|EDR30782.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922910|gb|EDR40061.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992736|gb|EDR45037.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206373|gb|EDR50853.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166960722|gb|EDR56743.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050994|gb|EDR62402.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057317|gb|EDR67063.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749897|gb|ACA67415.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis YPIII] gi|229681473|gb|EEO77567.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Nepal516] gi|229688233|gb|EEO80304.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229694569|gb|EEO84616.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701606|gb|EEO89633.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Pestoides A] gi|262366434|gb|ACY62991.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D182038] gi|270338234|gb|EFA49011.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294354907|gb|ADE65248.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|320016141|gb|ADV99712.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 716 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 186/696 (26%), Positives = 313/696 (44%), Gaps = 91/696 (13%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316 IEEG + + + DF + Y + F F +LG Y Y L +G R +E Sbjct: 69 IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375 + VA+ LA T + A E + S F +TPT N G + +L SCFL Sbjct: 128 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 184 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ D Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 304 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N LFSP ++ ++ + E I+ E Y D I+ KI A ++ + + FE Sbjct: 305 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 362 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603 +G+P++ F+D N +P + G ++ SNLC+EI +N+ +E + CNLG Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLG 420 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ D +I A+R L V ++ N ++ +K N AIGLG M Sbjct: 421 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMN 475 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y S EA++ + +++HAI AS +LA ER S FKG +D+ + Sbjct: 476 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERA--SHFKG--FDESDYA 531 Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767 S ++ ++ +T+R+ W L++ V G+ N N A+ Sbjct: 532 --SGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVP 589 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ I + SI P +V+ ++ R Sbjct: 590 PTGSISYINHSTSSIHP---------------------IVSPIEIR-------------K 615 Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 +G IG + + +D + + A++I P +I++ + + +DQ SL L+ D + Sbjct: 616 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + ++ AW G+KT YY+R R ++E + ++G Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710 >gi|270339460|ref|YP_003331540.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1] gi|254940176|gb|ACT88319.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1] Length = 786 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 181/663 (27%), Positives = 304/663 (45%), Gaps = 73/663 (11%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----FYNLLS 347 LGLQ + Y+ +L ++ +E FF+R+A A T + ++A+ ++ + Sbjct: 133 LGLQSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFK 192 Query: 348 SFHFMCS-------TPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSG 398 SF F S TP + G L+SC+L + + D I +++ A + G Sbjct: 193 SFFFYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRG 252 Query: 399 GLGNDWTPVRGLGAHIHGTNGK-----SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G+G + N K ++GV+P LK+ + +A+N +R VC Y+E Sbjct: 253 GIG----------ICLQNFNKKLSKECTKGVLPLLKLLDSMTIAINSDSERPTGVCIYVE 302 Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDE 506 WH D+ L++R D+ R ++ + W PDLF R ++ G WTLF D Sbjct: 303 PWHADIRSILNMRGMLASDENSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFD-DA 361 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 S L LYGKEF YE E A G + + A + R + TG P++ FKD Sbjct: 362 ASHLSKLYGKEFNEEYERLE-AAGMGVDSLPIQEMAYLIVRSAIM----TGSPFLMFKDA 416 Query: 567 CNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQFDYDKLA 622 CN G + +SNLCTEI ++ + VCNL SINL L A++Q Y + Sbjct: 417 CNRHYHFDTRGDALTTSNLCTEIIQKATDTKHGVCNLISINLPQCLRRIAHDQSLYFSIP 476 Query: 623 STIR---TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 IR TA ++ ++ E A + +R++GLG+ G + L + S EA Sbjct: 477 LLIRAAYTATIFVNAMMRAGNFPTEAAMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEA 536 Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 + + +E + AI AS L + + +F+ S++ +G+ P D+ + + Sbjct: 537 RRLNRQILESLLLGAIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTPLIHFK--- 593 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W +L+ + G+ NS +A+ PT + + + S+ P + NL+ K +G+ Sbjct: 594 ------KWQQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGE 647 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853 N L+ +++ + A +S + + + +I DL H TAFE D Sbjct: 648 ILRPNLQLMRTIRRLFPRECARLSVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQ 707 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907 LI+ + R ++DQ+QS++L++ EP+ KL + A+ GLKT YY + + Sbjct: 708 RQLIDMCADRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKK 767 Query: 908 ATS 910 AT+ Sbjct: 768 ATN 770 >gi|310764902|gb|ADP09852.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia sp. Ejp617] Length = 716 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 179/645 (27%), Positives = 288/645 (44%), Gaps = 69/645 (10%) Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 R F F+ +LG Y Y L +G R + F RV M + A+ + + Sbjct: 97 RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAKGDQPLALALMDEI 154 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D++ R ++ IPD+ + N LFSP +V ++ L + I+ E Y Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYALPFADVSIS-EKY 333 Query: 526 ERQADRGEIK-VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 D I+ F I+ ++ + + FE+G+P+I F+D N +P G ++ SNL Sbjct: 334 PEMLDDTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNL 389 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS +E + CNLGS+N+ AH D A T+ AVR L Sbjct: 390 CSEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGL 444 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + H++ ++ N AIGLG M L I Y S ++ + ++ Sbjct: 445 TAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVT 504 Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTS 742 +HA+ S +LA+ER +S F S + G + +G +A + + S Sbjct: 505 YHALRTSNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPS 564 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W LK+ V G+ N N AI PT +I+ I + SI P Sbjct: 565 QQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------ 606 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 +V+ ++ R + Y+ N +D + ++ A++I P +I++ + Sbjct: 607 ---IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQALYRDAYDIGPEAIIDTYAE 654 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 655 ATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699 >gi|289423476|ref|ZP_06425278.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus anaerobius 653-L] gi|289156110|gb|EFD04773.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus anaerobius 653-L] Length = 704 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 176/657 (26%), Positives = 294/657 (44%), Gaps = 82/657 (12%) Query: 286 KYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340 KY F FE Y+ Y+ Y L + + +E + + ++ +A +T K Sbjct: 80 KYICSFGFEFMSYMSASKFYENYALKTDDGKKILENYEDKILICSLAIASGDTRVAKDVA 139 Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + L F +TPT N G R QL SCFL TV D GI A+ L+K GG Sbjct: 140 K---RLIKQEFQPATPTFLNLGRKRAGQLVSCFLLTVEDSCEGISYAVASANHLSKIGGG 196 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + T +R G I G G S GV+ K+ + NQ G R+GA YL H D Sbjct: 197 VALNLTRLRARGESIKGIEGASGGVVGVAKMLEQSFSYFNQMGARQGAGAVYLNVLHADF 256 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 + +D +K D+R R ++ IPD+FMK +N F P + + L+ + Sbjct: 257 DALMDTKKINADERVRLATLSIGAIIPDVFMKLAEKNEVGYAFYPHSIYKKYALHLDDLN 316 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y++ +I+ ++I+ + ++ E+G+P+I + D N + +G+V Sbjct: 317 MN-EWYDKLVADPDIRK-KEINPRVILTRIAATQMESGYPYIVYIDTANKNHTLKGLGMV 374 Query: 580 HSSNLCTEI-------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 SNLC EI + NS + CNLGS+N+ N + ++ I Sbjct: 375 RMSNLCCEIFQYQSPSHIEGYGSKNSQWGQDISCNLGSLNIA-----NIMEGKEMGHAID 429 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A+R L +V D N + K N ++GLG M L +I Y S EAV+ + Sbjct: 430 VAIRFLTDVSDRTNIEEVPTVKNGNDKSHSVGLGAMNLHGYLMKNNIRYDSDEAVDFCNV 489 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL 736 + +HAI S+++A+E+G + F+ S + +G + ID + +VR Sbjct: 490 FFAMMRYHAIKTSMKIAKEKGQTFDGFEKSEYSKGESSDVLGKYYQIDYLPKTDKVR--- 546 Query: 737 AMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 A+ +P W +L +VK +G+ N+ MAIAPT +I+ + + S+ P + + V+ Sbjct: 547 ALFEGMMIPRKEDWKDLLDQVKEVGIYNAYLMAIAPTQSISYVQNATSSVMPITEQIEVR 606 Query: 793 SNMSGDFTVVN--SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + GD T + FL NE +L + + +A+ Sbjct: 607 --IYGDSTTIYPMPFLTNE-------------NLLF------------------YKSAYN 633 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 D + +I+ + Q +DQ S L++ D+ + + + Y A+ GLK+ YY R++ Sbjct: 634 TDMLKVIDVVAAVQDHVDQGISTTLFVTDDKTTRDIARYYIYAYKKGLKSLYYTRTK 690 >gi|294853319|ref|ZP_06793991.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] gi|294818974|gb|EFG35974.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] Length = 738 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 184/663 (27%), Positives = 289/663 (43%), Gaps = 83/663 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A D Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLR 904 Y+R Sbjct: 717 YIR 719 >gi|296170901|ref|ZP_06852438.1| ribonucleoside-diphosphate reductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894450|gb|EFG74194.1| ribonucleoside-diphosphate reductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 701 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 176/674 (26%), Positives = 285/674 (42%), Gaps = 100/674 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFA-----FEYLGLQ-----------ILYD 303 I++ V+ARL + + D Y Y R A E LG++ +L + Sbjct: 73 IQDLVEARLTADGLDDVARAYAV----YRRQHAELRATKELLGVRDELKLSVAAVTVLGE 128 Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPT 357 RY L + G +E RVA +A E + + A F LL F+ ++PT Sbjct: 129 RYLLRDDRGRPVESTGEMMDRVADHVAGAEEKFRPGSSAQWAQRFSALLRGLEFLPNSPT 188 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 L N+GT LS CF+ V D L+ IF AL + A + + GG G ++ +R G + T Sbjct: 189 LMNAGTELGLLSGCFVLPVDDSLHSIFTALAQGADIHQAGGGTGYTFSHLRPTGDLVVRT 248 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G + G + FL++ + A ++ GG+R+GA A L+ H D+ +F+ + + + + Sbjct: 249 GGTASGPLSFLRLFDYAAAVISMGGRRRGASMAVLDVSHPDIYDFVTAKSGSQTE---LN 305 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 N + + D F++ V + L +P K Sbjct: 306 QFNLSVGVTDEFLRAVGRGGSHRLVNPRTG---------------------------KTA 338 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 +SA L+ + G P + F D N +P +G + ++N C E+ L Sbjct: 339 ATVSAADLFTAICEAAHRCGDPGLVFLDTINRANPTPALGRIEATNPCGEVPLLPYES-- 396 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNLGSINL D+++L + AVR LD+VID++ + + + R IG Sbjct: 397 --CNLGSINLARMVGAGGVDWERLTAVAELAVRFLDDVIDVSRLPFPEVEAATTATRKIG 454 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L L IPY S V +A ++ A +AS LA+ERG + +F S + Sbjct: 455 LGVMGLAELLAGLGIPYDSERGVRLAARIARTVNRAAHAASERLAEERGPFPAFGHSRF- 513 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G P RN+ +IAPT TI+ I G Sbjct: 514 AGSAP-----------------------------------RRNAQLTSIAPTGTISLIAG 538 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S I+P + Y+++ + VN + R + +I+++ H G + + Sbjct: 539 TSAGIEPMFAIAYIRAVIGRRLLEVNPCFDRLARDRGFYHPDLIAEIARH-GGVRRDPHV 597 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896 P +++ TA EI P W + + Q+ +D A S + L E + + + IY AW Sbjct: 598 PAEVRAAFPTAAEIAPEWHLRMQAAVQRHVDAAVSKTVNLPAESTVEDVRTIYLAAWRAR 657 Query: 897 LK--TTYYLRSRSA 908 +K T Y SR+ Sbjct: 658 VKGITVYRYGSRAG 671 Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 V +R+G + FD ++I AI G+ A + + L ++V L Sbjct: 13 NVRRRDGRLVPFDVARIETAI--------GRAAREAGHRDPQLPALLARSVADALVGRFR 64 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 + I +E IQD VE L G + R Y +YR + +++RA + Sbjct: 65 SGIPTVEGIQDLVEARLTADGLDDVARAYAVYRRQHAELRATK 107 >gi|262341078|ref|YP_003283933.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272415|gb|ACY40323.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 570 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 178/618 (28%), Positives = 268/618 (43%), Gaps = 106/618 (17%) Query: 305 YFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y I G + E P + R+A A K +K K +F+N+ + STP + N Sbjct: 27 YLTTIKGGYLLDGETPFEAYKRLAKNAA-KILKKPKIEEKFFNIFWKGWLIPSTPVMVNL 85 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI-HGTNGK 420 GT SCF + D +Y I+ E A+L+K+ GG D++ VR +G+ I +GT G Sbjct: 86 GTEKGLPISCFSGRIGDSMYEIYRKNLEMAILSKHGGGTSYDFSLVRPIGSPIKNGTLGS 145 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GVIPF+K + VA QG R+GAV YL H + EFL +R+ GD R+ H+++ Sbjct: 146 SDGVIPFIKSYDSAIVASKQGRTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCHNVH 205 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 I D FM+ V + G ER Sbjct: 206 QGVIISDSFMEEVLKKNG--------------------------KER------------- 226 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEET 597 + W L +TG P++ FKD N P+ + G+ +H SNLC+EI L + T Sbjct: 227 ---SFWINTLKERVKTGEPYLFFKDNANKNLPENWEKNGLKIHHSNLCSEIMLPTDENHT 283 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651 VC L S+NL + K +T+ A+ LD V+ N IE A + Sbjct: 284 LVCCLSSLNLYKYVE------WKNTNTVFYAILFLDAVLQEFIDKGKNIQGIEDAVRFAE 337 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 RA+GLG +G+ S L IP+ S ++ + I + A+ LA+E G Sbjct: 338 KSRALGLGALGWHSYLQSNMIPFISVQSEILTHNIFRKIQLESQKATKYLAKEYGE---- 393 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 S W+ G G RN MA+AP + Sbjct: 394 --SEWNIGT------------------------------------GRRNLTLMAMAPNRS 415 Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 A + G+SQ ++P N+YV + G N +L L + + + GS Sbjct: 416 SAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKMLIEIGYNLPEVWEQIANEKGS 475 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889 + + ++ K + EI+ + LI AS RQK+IDQ QS+NL + + K ++ ++ Sbjct: 476 CLGLTALSEEQKNVFRCFKEINQLELIRQASIRQKYIDQGQSINLSFHQNTPAKYINKVH 535 Query: 890 RQAWLMGLKTTYYLRSRS 907 +AW +GLK+ YY RS S Sbjct: 536 LEAWKIGLKSLYYYRSES 553 >gi|326381480|ref|ZP_08203174.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia neofelifaecis NRRL B-59395] gi|326199727|gb|EGD56907.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia neofelifaecis NRRL B-59395] Length = 705 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 192/697 (27%), Positives = 296/697 (42%), Gaps = 104/697 (14%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310 PE +Y E VK H Y + F F +LG Y Y L + Sbjct: 53 PEVLAKYDREFVKLLFGH---------------AYSKKFRFPTFLGAFKYYTSYTLKTFD 97 Query: 311 GSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQL 368 G R +E + VA+ LA +T + V+ + F +TPT NSG + + Sbjct: 98 GKRYLERFEDRVCMVALTLADGDTALARHLVD---EIMDGRFQPATPTFLNSGKKQRGEP 154 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I ++ L+K GG+ + VR GA I +S GVIP + Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKRIENQSSGVIPIM 214 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKVFRKISAVAL 545 + N LFSP D+ +YGK F ++ E + DR K KI A Sbjct: 275 TFQLAKDNDDMYLFSP---YDVERVYGKPFADVNVSDEYHAMVEDRRIRK--SKIKAREF 329 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------- 596 ++ + + FE+G+P+I F+D N +P G V SNLC+EI S+ E Sbjct: 330 FQTLAELQFESGYPYIMFEDTVNRSNPID--GKVTHSNLCSEILQVSTPSEFNEDLTYSQ 387 Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652 CNLGS+N+ D +I TA+R L V D + ++ K++N Sbjct: 388 VGKDISCNLGSMNIA-----KTMDSPDFGQSIETAIRGLTAVADQTSIESVPSIKRANDE 442 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSF 711 AIGLG M L I Y S E ++ + + FHAI AS ++A+ERG ++ F Sbjct: 443 GHAIGLGQMNLHGYLARERIFYGSEEGIDFTNMYFYTVLFHAIRASNKIAKERGTTFAGF 502 Query: 712 KGSLWDQG--------------------VFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + S + G +F G ++ + ++ ++ W ELK Sbjct: 503 EKSKYASGEFFDKYTDQVWEPATEKVREIFANAGPGESGQLFSDNGIHIPTQDDWRELKA 562 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL 810 V+ G+ N N A+ PT +I+ I + SI P + + K G +L N+ Sbjct: 563 SVQKYGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 N+E D A+EI +I++ + + +DQ Sbjct: 622 ----------------------NLEYYQD--------AYEIGYEKIIDTYAAATQHVDQG 651 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 SL L+ D S + ++ AW G+KT YY+R R Sbjct: 652 LSLTLFFKDTASTRDVNKAQIYAWRKGIKTLYYIRLR 688 >gi|256820789|ref|YP_003142068.1| ribonucleotide-diphosphate reductase subunit alpha [Capnocytophaga ochracea DSM 7271] gi|315223932|ref|ZP_07865777.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] gi|256582372|gb|ACU93507.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga ochracea DSM 7271] gi|314946104|gb|EFS98108.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] Length = 551 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 168/584 (28%), Positives = 256/584 (43%), Gaps = 116/584 (19%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F +++ S+P N GT SCF VPD + GI L E M K GG Sbjct: 53 FKEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTS 112 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D EE Sbjct: 113 GYFGELRSRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEE 171 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL ++ D ++ +PD +M+ + Sbjct: 172 FLQIK----DVEFPIQNLFFGICVPDYWMQEMID-------------------------- 201 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578 G+++ R LW ++L + G P+I F D N PQ + + Sbjct: 202 ----------GDVEKRR------LWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDML 245 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + SSNLC+EI L SS +E+ +C L S+NL FD K ++ AV LD V+ Sbjct: 246 IRSSNLCSEIMLPSSEDESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLS- 298 Query: 639 NCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 IEK K + + HRA+GLG++G+ S L IP+ S EA + + + Sbjct: 299 --EFIEKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFRY 356 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A A+ ELA G KG Sbjct: 357 IREEADKATKELAHIYGEPEILKG------------------------------------ 380 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN+ MAIAPT + + I G VS I+P N Y G+F N +L Sbjct: 381 ------YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQ 434 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L+++ L +E + ++ ++GS+ +++ + K + T EI PM +I A++RQ +ID Sbjct: 435 LLEEKGLNNEEVWRSIRLNNGSVQHLQELSQLEKNVFKTFKEISPMEIISQAAQRQAYID 494 Query: 869 QAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 Q QSLNL + PS + ++ + +AW +G+K+ YY RS+S Sbjct: 495 QTQSLNLNI--PSAMPIRDVNKVLIEAWKLGVKSLYYQRSQSVA 536 >gi|228938566|ref|ZP_04101174.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971445|ref|ZP_04132071.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978058|ref|ZP_04138437.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis Bt407] gi|228781719|gb|EEM29918.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis Bt407] gi|228788312|gb|EEM36265.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821164|gb|EEM67181.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939075|gb|AEA14971.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 682 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 172/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++I+ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|157955367|gb|ABW06069.1| NrdE [Bacillus thuringiensis serovar galechiae] Length = 694 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 172/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++I+ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|116670902|ref|YP_831835.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter sp. FB24] gi|116611011|gb|ABK03735.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Arthrobacter sp. FB24] Length = 727 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 183/660 (27%), Positives = 293/660 (44%), Gaps = 74/660 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y++ F FE +LG Y Y L +G R +E + VA+ LA + E+ A++ Sbjct: 108 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGD---EQLALQMV 164 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT N+G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 165 DEIIEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 224 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 225 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 284 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ IPD+ + ++ LFSP D+ +YG F Sbjct: 285 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSP---YDVERVYGMPFSDVS 341 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D IK KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 342 VTEKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPID--GKII 398 Query: 581 SSNLCTEITLNS---------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI S S ++T CNLGS+N+ D TI TA Sbjct: 399 MSNLCSEILQVSQPTTYHDDLSYDQTGKDISCNLGSLNIA-----KTMDSPDFGLTIETA 453 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D+ N ++ + N AIGLG M L + Y S E ++ + Sbjct: 454 IRSLSAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYF 513 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSRL 744 + +HA+ AS +LA + G + F+ S + G F + + + + + Sbjct: 514 YSVVYHAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKYTDQEWVPQTEKVAELFKNIHI 573 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 P W ELK V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 574 PTQDDWRELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKLGRV 633 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +L N+ N+E D A+EI +I++ Sbjct: 634 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKVIDT 662 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 663 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 721 >gi|256059455|ref|ZP_05449657.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella neotomae 5K33] Length = 738 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 187/677 (27%), Positives = 296/677 (43%), Gaps = 84/677 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC EI S + + CNLGS+N+ A D Sbjct: 401 PID--GRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 512 EEGVDFTNIYFYTVAYHAMRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627 Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + K G +F+ N+ N+E D Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYLD--- 661 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT Y Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716 Query: 902 YLRSRSATSVEKSTLKG 918 Y+R R ++E + ++G Sbjct: 717 YIRLRQ-MALEGTQVQG 732 >gi|332882773|ref|ZP_08450384.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679275|gb|EGJ52261.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 551 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 167/581 (28%), Positives = 255/581 (43%), Gaps = 110/581 (18%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F +++ S+P N GT SCF VPD + GI L E M K GG Sbjct: 53 FKEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTS 112 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D EE Sbjct: 113 GYFGELRSRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEE 171 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL ++ D ++ +PD +M+ + Sbjct: 172 FLQIK----DVEFPIQNLFFGICVPDYWMQEMID-------------------------- 201 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578 G+++ R LW ++L + G P+I F D N PQ + + Sbjct: 202 ----------GDMEKRR------LWARVLESRQQKGLPYIMFTDNANRNRPQVYKDKDML 245 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 + SSNLC+EI L SS EE+ +C L S+NL FD K ++ AV LD V+ Sbjct: 246 IRSSNLCSEIMLPSSEEESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLSE 299 Query: 638 -----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + ++ A+K HRA+GLG++G+ S L IP+ S EA + + I Sbjct: 300 FIEKTKGNYYLQAARKFAMRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARTFRHIRE 359 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A A+ ELA G KG Sbjct: 360 EADKATKELAHIYGEPELLKG--------------------------------------- 380 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ MAIAPT + + I G VS I+P N Y G+F N +L L+ Sbjct: 381 ---YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLE 437 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L +E + ++ ++GS+ +++ + K + T EI PM ++ A++RQ +IDQ Q Sbjct: 438 EKGLNNEDVWRSIRLNNGSVQHLQELTQLEKNVFKTFKEISPMEIVSQAAQRQAYIDQGQ 497 Query: 872 SLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 SLNL + PS K ++ + +AW +G+K+ YY RS+S Sbjct: 498 SLNLNI--PSVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVA 536 >gi|304385473|ref|ZP_07367818.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus acidilactici DSM 20284] gi|304328680|gb|EFL95901.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus acidilactici DSM 20284] Length = 721 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 181/718 (25%), Positives = 318/718 (44%), Gaps = 88/718 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L K+ +A + L + E+ ++A L+ + FD + D + Sbjct: 32 QEALAAFLKENVQANTKQFASLRERFDYLLEEDYIEAELMEK--YSFDFIEKLYDYLRAQ 89 Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +F F ++ Y +Y L N + + + F RVAM E+ A++ + + Sbjct: 90 NFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADEIIH 148 Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +H +L SCFL DD+ I + L+K GG+G + T + Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----E 523 D++ R ++ +PD F + + + LFSP V +YGK + AY + Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVE---KVYGKPY--AYVDITK 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ + EIK + K+ A + ++ + E+G+P++ D N +P G + SN Sbjct: 324 EYDNLVNNPEIKKY-KVKARNIENEISKLQQESGYPYVVNVDTANRENPI--YGKIVMSN 380 Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +++ T + CNLGS N++ A F ++ T VR Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPHF-----GKSVETMVRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + + N IGLG MG L H+ Y P++VE + Sbjct: 436 LTFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLL 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSR 743 ++ + AS ++A+ERG + +F+ S + G + G + EL ++ + Sbjct: 496 NYWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTT 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W +LK+ V G+ + N MA+APT +I+ I + S+ P Sbjct: 556 ADWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQP------------------- 596 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +VN +++R E I + Y + N D K + +A++ID +++ + Sbjct: 597 --IVNRVEER---QEKKIGKIYYPAPYLSN------DTLKYYQSAYDIDMRKVVDIYAAA 645 Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ S+ ++ P G + L+ + A G+K+ YY+R+ Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703 >gi|261820461|ref|YP_003258567.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium wasabiae WPP163] gi|261604474|gb|ACX86960.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium wasabiae WPP163] Length = 721 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 190/690 (27%), Positives = 314/690 (45%), Gaps = 74/690 (10%) Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313 RY +EEG +A +L + FD + Y F F+ +LG Y Y L +G R Sbjct: 71 RYLVEEGYYEADVLDQ--YSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 128 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371 +E + VA+ LA +T A + + S F +TPT N G + +L SC Sbjct: 129 YLERYEDRVCLVALALAKGDT---ALASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 185 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 186 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 245 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 246 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 305 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N LFSP +V ++ + E + E Y + I+ +I A ++ + Sbjct: 306 LAKNNQVMYLFSPYDVEQVYGMPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 363 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599 + FE+G+P++ F+D N +P G ++ SNLC+EI +N +S + Sbjct: 364 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKDIS 421 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ A+ F T+ A+R L V D+ + ++ +K N AIGL Sbjct: 422 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAIGL 476 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717 G M L I Y + EAV+ + ++FHAI AS LA ER +S F+ S + Sbjct: 477 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 536 Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G + I E+ ++ ++ ++ W L++ V G+ N N A+ PT Sbjct: 537 TGEYFDKYIEQQWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 596 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P +V+ ++ R E I + Y Sbjct: 597 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 632 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + N D+L+ + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 633 YMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 686 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 687 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 715 >gi|85860286|ref|YP_462488.1| ribonucleoside-diphosphate reductase subunit alpha [Syntrophus aciditrophicus SB] gi|85723377|gb|ABC78320.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus aciditrophicus SB] Length = 551 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 169/618 (27%), Positives = 268/618 (43%), Gaps = 100/618 (16%) Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET-EKEKRAVE----FYNLLSSFHF 351 L +L +RY + G+ +E P+ F RVA ++ E + E R+ E FY +++S F Sbjct: 12 LLVLRERYLIRDEAGTLLETPEELFRRVACSVSQGENNDPEGRSAEMEEAFYEMMTSLEF 71 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QL++CF+ V D L IF +++ A + + GG G ++ +R Sbjct: 72 LPNSPTLMNAGRPLGQLAACFVLPVEDSLDSIFDSVKLTAKIHQTGGGTGFSFSRLRPKN 131 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + T G + G + F++V N A+ QGG R+GA L H D+ EF+ ++++ + Sbjct: 132 DVVKSTMGVASGPVSFIRVFNCATEAIKQGGTRRGANMGILRIDHPDIMEFVAIKRDPAE 191 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + N + I D FM+ +N L +P Sbjct: 192 ----LTNFNLSVAITDEFMRSYEENRDVALINPRTK------------------------ 223 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 K K++A L R + + +G P + F D N +P HVG + ++N C E L Sbjct: 224 ---KAAGKVNARELLRFIAEAAWASGEPGVIFLDAINRANPTPHVGEIEATNPCGEQPLL 280 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 C LGSINL N D+ +L VR LD+V++++ + E+ + Sbjct: 281 PYES----CCLGSINLSRIVRNGGIDWQRLQKLTHLGVRFLDDVVEVSTYPSEEIRAMTS 336 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+MGF L L IPY SP+A E + I + AS LA++RG + +F Sbjct: 337 GNRKIGLGVMGFAHLLIRLGIPYDSPDAERTGGEIIRLIERESKIASNRLAEKRGPFPNF 396 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 KGS+WD+ K + RN+ IAPT T Sbjct: 397 KGSVWDR-----------------------------------KNLLQRNATTTTIAPTGT 421 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 ++ + G S ++P Y Y + G V L + K R DE Sbjct: 422 LSILAGTSSGVEPIYDIRYKRILPGGIEVEVEDPLWRKAKDRPDADELR----------- 470 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK--LDFIY 889 +++ A+E+ P + Q +D A S + L E + LD IY Sbjct: 471 ----------RRLFRKAYEVSPFAHLNIQRTFQSSVDNAVSKTVNLPETATADDILD-IY 519 Query: 890 RQAWLMGLKTTYYLRSRS 907 A+ MGLK T R++S Sbjct: 520 VAAYRMGLKGTTVFRNKS 537 >gi|238897539|ref|YP_002923218.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465296|gb|ACQ67070.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 762 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 176/678 (25%), Positives = 291/678 (42%), Gaps = 57/678 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG S + ++ ++ A GL VS V + YDG+ D+ +I Sbjct: 5 LLVTKRDGRKESIDLDKIHRVINWAAEGLNHVSVSQVELRSQIQFYDGIKTEDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ P L+ E+ + ++ G Sbjct: 65 AAADLISCEAPDYQYLAARLAIFHLRKKAYGRFEPPP----------LF-EHVSKMVKMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + + RD F Y ++ L +Y + +N E Q + Sbjct: 114 KYDPHLLEDYSEDEFAQMDECIDHWRDMTFSYAAVKQLEGKYLVQNRVNHQIYESAQFLY 173 Query: 322 MRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 + VA L + + + FY+ +S+F TP + +G R P Q SSC L Sbjct: 174 ILVAACLFSRYPASTRLDYIKRFYHAISTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R G+ I G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRAQGSPIRSGEAFHTGCIPFYKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 292 CSQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+ + EF+ Y YE D I+ +KI AV L+ ++ Sbjct: 352 EITLFSPSDVPGLYAAFFSDQSEFQRLYVQYEADPD---IR-HKKIKAVELFSLLMQERA 407 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC----- 600 TG ++ D CN SP V V SNLC EI L N E A+C Sbjct: 408 STGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTAPLNNINDEKGEIALCTLSAF 467 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLG+IN L D+L + R LD ++D + I A++S + R +G+G+ Sbjct: 468 NLGAINSL----------DELQELATLSARALDALLDYQHYPIPAAQRSAVSRRTLGIGV 517 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 + F L + Y+ A + + E I ++ + AS +LA+E+GA F + + +G+ Sbjct: 518 INFAYYLARNGVRYSDGSANNLTHRTFEAIQYYLLRASNDLAREQGACPWFDQTRYAKGI 577 Query: 721 FPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PID+ L ++ E W L++ + G+R+S ++ P+ T + I + Sbjct: 578 LPIDTYKKDLDDIHQE-----PLHYDWASLRQDILKFGLRHSTLSSLMPSETSSQISNAT 632 Query: 780 QSIDPSYQNLYVKSNMSG 797 I+P + +K++ G Sbjct: 633 NGIEPPRGYVSIKASKDG 650 >gi|196040726|ref|ZP_03108025.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus NVH0597-99] gi|196028516|gb|EDX67124.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus NVH0597-99] Length = 682 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A+E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|228945049|ref|ZP_04107410.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814718|gb|EEM60978.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 682 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESEEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A+E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|183981656|ref|YP_001849947.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE [Mycobacterium marinum M] gi|183174982|gb|ACC40092.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE [Mycobacterium marinum M] Length = 721 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 184/653 (28%), Positives = 289/653 (44%), Gaps = 75/653 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA + ++ V Sbjct: 97 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDATLAEKLV 156 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 157 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 213 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 214 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 273 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 274 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 330 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P + G Sbjct: 331 DISVTEKYYEMVDDSRIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPIE--G 387 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 388 KITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----RTMDSPDFAQTI 442 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L HI Y S E V+ + Sbjct: 443 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREHIFYGSEEGVDFTN 502 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F S + G F + E + E L + Sbjct: 503 IYFYAVLYHALRASNRIAVERGTRFKGFDQSKYASGEFFDKYTERVWEPKTEKVRQLFAD 562 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 563 AGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEG 622 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ NE +L Y+ A+EI Sbjct: 623 KIGRVYYPAPYMTNE-------------NLDYYQD------------------AYEIGYE 651 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 652 KIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLR 704 >gi|42780544|ref|NP_977791.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus ATCC 10987] gi|42736464|gb|AAS40399.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus ATCC 10987] gi|157955323|gb|ABW06036.1| NrdE [Bacillus thuringiensis serovar tochigiensis] Length = 694 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A+E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|30261451|ref|NP_843828.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus anthracis str. Ames] gi|50196926|ref|YP_052620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus anthracis str. 'Ames Ancestor'] gi|50082988|gb|AAT70128.1| ribonucleoside-diphosphate reductase, alpha subunit, group I intron-containing [Bacillus anthracis str. 'Ames Ancestor'] Length = 694 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESEEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A+E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|329738367|gb|AEB97331.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1] Length = 786 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 174/601 (28%), Positives = 272/601 (45%), Gaps = 59/601 (9%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAM-LAKYSGG 399 F+ LSS + TP + GT +SCFL + + F + E + + GG Sbjct: 195 FFTCLSSQLIVPPTPVMLFGGTSLAAYASCFLIDSSGRNTREAFNVVAEEVIPIMNNRGG 254 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G + G G + FLK + A N KR +C Y E WH D Sbjct: 255 IG--------ISLPCLGAPQNESGCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHCDT 306 Query: 460 EEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKE 517 + L +R ++ G++ R ++ TA W+PDLFMKR+ Q + WTLF L +L+G+E Sbjct: 307 LKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPGSKWTLFD-HRGEHLSNLFGEE 365 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS--PQQH 575 FE YE ER+ + V I + +++ TG P++ FKD N QH Sbjct: 366 FEKEYERLERE----NVGV-ATIPITEIMFQIIKSAVSTGTPFVVFKDAFNRHYFYNMQH 420 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLASTI 625 + SNLCTEI + S+ VCNL SINL A N + FDY+ L T Sbjct: 421 RAL-KCSNLCTEIAHMADSDTVGVCNLISINLAAMVKNARAGLAGKPGSFFDYELLRETA 479 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 RTA + +I + ++A+ NH R++G+G+ G +A + S E E D Sbjct: 480 RTATIFANVMISLGNMPSQRAQSGNHRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFNDT 539 Query: 686 SMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTS 742 E ++ S L E G + ++ S + G ID ++E Sbjct: 540 VFELLALETTGISCRLC-ELGLPPFDKYRESYYALGWLHIDGWPNTKLRYKNE------- 591 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 WD L+ R+ G+ N +A+ PTA+ + I VS+ P + N++ K + +G+ Sbjct: 592 ---WDSLRHRIDQSGLYNCQTVALMPTASSSQITEVSEGFQPVFGNMFSKISTTGEEVRP 648 Query: 803 NSFL---VNELKQRDLWDEAMISDLKYHDGSI----GNIERIPDDLKKIHATAFEIDPMW 855 + L ++EL +A +++LK H S+ G+ L K TAFE+D Sbjct: 649 HLALMDAIDELYSDQGEKQAFLANLKKHQWSVRAALGSAWSESHVLAKFQ-TAFELDQEK 707 Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKTT-YYLRSRSAT 909 L+ ++RR +ID +QS LY+ E S ++ + + A+ GLKT YY + R T Sbjct: 708 LLYLSARRAPFIDHSQSNTLYITEDVDGTLSASRVSRLLQVAFKYGLKTAMYYCKVRKIT 767 Query: 910 S 910 + Sbjct: 768 N 768 >gi|160903303|ref|YP_001568884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Petrotoga mobilis SJ95] gi|160360947|gb|ABX32561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Petrotoga mobilis SJ95] Length = 840 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 185/667 (27%), Positives = 301/667 (45%), Gaps = 103/667 (15%) Query: 297 GLQILYDRYFLHIN-GSRIEMP-QAFFMRVAMGLALKET------EKEKRAVE-FYNLLS 347 + IL DRYFL G+ +E R+A +A E E+ K A E FY L+ Sbjct: 16 AITILKDRYFLKDGEGNYLESTWDEVAKRIARHVAAAEVNYTNDIEEIKNAEEHFYQLIK 75 Query: 348 SFHFMCSTPTLFNSG---------------------------TRHPQLSSCFLTTVPDDL 380 S F+ ++PT+FN+G T+H LS+CF+ + D + Sbjct: 76 SRIFLPNSPTIFNAGKTMDRQLFKKDIEETTLEDYKTIFDSRTKHNMLSACFVIPMDDSM 135 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 IF A++ A++ KY GG+G D++ +R G+ I GT GKS G I F+ V N A + Q Sbjct: 136 SAIFDAVKNAALIMKYGGGVGYDFSVLRPKGSSIAGTGGKSSGPISFMHVFNTAASTIEQ 195 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRK-NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG R+ A A L H DV +F++ +K N G++ +++ P F K + ++ Sbjct: 196 GGARRAAQMAVLRYDHPDVFDFINSKKDNKGNNVLNYFNISVNIDNPKEFKKMLEEDGDL 255 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TL P + + I A L KM+ ++TG P Sbjct: 256 TLEHPAS----------------------------SIRKTIKANDLMNKMVENAWKTGDP 287 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------ 613 + F N V ++N C E L CNLGSI++ + Sbjct: 288 GMLFLGRHNQYYAMSEHTPVTATNPCGEEPL----PPFGSCNLGSIDVAKLVEDMDLGNP 343 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 N D + + AVR LD+VI+ N + +++ ++ + R IGLG+MG AL+ +P Sbjct: 344 NSPDISEFQEIVYWAVRFLDDVIESNIYPLKEIEEISKKQRFIGLGMMGLADALYKKELP 403 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S +A + + +++ + AS ELA+ERG + F+ S + G P L E+ Sbjct: 404 YNSEQARKFMAKLTAELAYFSHVASTELAKERGNFPDFQRSKYPNGFIPFPM--LDDEID 461 Query: 734 DELAMNRTSRLPWDELKKR----VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +++ + W+E ++ T RN IAPT +I+N+ S I+P++ Sbjct: 462 EDIKV-------WNEKIRQHFQGEATKYKRNVQTNTIAPTGSISNLADTSSGIEPNFLLS 514 Query: 790 YVK--SNMSGD---FTVVNSFLVNELKQRDLWDEAMISDLK---YHDGSIGNIERIPDDL 841 YV+ +N GD + +N L+ ++ M +LK GSI NI+ IP+++ Sbjct: 515 YVRYMTNKEGDRVPLSYINPILMEKIGTN------MTEELKAEIIEKGSIQNIDSIPNEI 568 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900 KKI T+ +I P + + Q ++D + S + + + S + + IY QA + LK Sbjct: 569 KKIFVTSMDIPPKDHLLAQHVIQSYLDASCSKTINMPKSSTIEDVKAIYLQALELNLKGL 628 Query: 901 YYLRSRS 907 R S Sbjct: 629 TIYRDGS 635 >gi|253689502|ref|YP_003018692.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756080|gb|ACT14156.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 721 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 190/690 (27%), Positives = 314/690 (45%), Gaps = 74/690 (10%) Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313 RY +EEG +A +L + FD + Y F F+ +LG Y Y L +G R Sbjct: 71 RYLVEEGYYEAEVLDQ--YQFDFIKRLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 128 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371 +E + VA+ LA +T V+ + S F +TPT N G + +L SC Sbjct: 129 YLERYEDRVCLVALTLAKGDTALAGALVD---EIISGRFQPATPTFLNCGKKQRGELVSC 185 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 186 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 245 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 246 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 305 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N LFSP +V ++ + E + E Y + I+ +I A ++ + Sbjct: 306 LAKNNQVMYLFSPYDVEQVYSVPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 363 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599 + FE+G+P++ F+D N +P G ++ SNLC+EI +N +S + Sbjct: 364 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKDIS 421 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ A+ F T+ A+R L V D+ + ++ +K N AIGL Sbjct: 422 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHIRSVPSIEKGNDESHAIGL 476 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717 G M L I Y + EAV+ + ++FHAI AS LA ER +S F+ S + Sbjct: 477 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFEHSKYA 536 Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G + I E+ ++ ++ ++ W L++ V G+ N N A+ PT Sbjct: 537 TGEYFDKYIEQCWEPTTARARELFEQADIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 596 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P +V+ ++ R E I + Y Sbjct: 597 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 632 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + N D+L+ + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 633 YMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 686 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 687 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 715 >gi|188025724|ref|ZP_02959589.2| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827] gi|188020254|gb|EDU58294.1| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827] Length = 723 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 183/672 (27%), Positives = 303/672 (45%), Gaps = 72/672 (10%) Query: 276 FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLAL 330 +D ++ K Y F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 89 YDFAFIKKLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLA- 147 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQE 389 + A + + S F +TPT N G + +L SCFL + D++ I ++ Sbjct: 148 --QGNQALASYLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNS 205 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S GV+P +K+ D NQ G R+GA Sbjct: 206 ALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKMLEDAFSYANQLGARQGAGA 265 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP ++ Sbjct: 266 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENKEMYLFSPYDIER 325 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + E + E Y + IK + KI+A ++ + + FE+G+P+I F+D N Sbjct: 326 EYGVPMSEISVT-EKYHEMVNNKAIKKY-KINAREFFQTLAEIQFESGYPYILFEDTANR 383 Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFD 617 +P G ++ SNLC+EI +N S + CNLGS+N+ D Sbjct: 384 ANPI--AGRINMSNLCSEILQVNRPSFYEDDLSYREVGKDISCNLGSMNIA-----KMMD 436 Query: 618 YDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 A ++ A+R L V D+ + ++ ++ NH AIGLG M L I Y S Sbjct: 437 APDFAQSVAIAIRALTAVSDMSHIRSVPSIEQGNHQSHAIGLGQMNLHGYLARERIHYGS 496 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG-------- 727 EA++ + I++HA+ S +LA ER A + F+ S + G + I Sbjct: 497 EEALDFTNIYFYTITYHALKTSNQLAIERKATFKGFEHSEYANGRYFDKYINQSWLPKTQ 556 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + E+ + ++ W LK+ V G+ N N AI PT +I+ I + SI P Sbjct: 557 TVQELFRRSGIEIPTQADWLSLKQSVMEHGIYNQNLQAIPPTGSISYINNSTSSIHP--- 613 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +V ++ R E I + Y + N D+L+ + Sbjct: 614 ------------------IVARIEIRK---EGKIGRVYYPAPFMNN-----DNLE-YYQD 646 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+R R Sbjct: 647 AYQIGPEKIIDTYAVATQHVDQGLSLTLFFKDDATTRDINRAQIYAWRKGIKTLYYIRLR 706 Query: 907 SATSVEKSTLKG 918 T++E + + G Sbjct: 707 Q-TALEGTEIDG 717 >gi|157311535|ref|YP_001469578.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage Phi1] gi|149380739|gb|ABR24744.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage Phi1] Length = 747 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 209/802 (26%), Positives = 347/802 (43%), Gaps = 114/802 (14%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205 ++ G + F +++ I+E A G +V + + +G+S +D++ LI + Sbjct: 5 VVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKVA 63 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEE 262 + + + P+Y V + + LR+ +VY + Q +++C R I Sbjct: 64 ADNITVETPDYQYVASNLAMFALRK----SVYGQFQPI----------DFYCHIERNIAT 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320 G R + + ++ YL + ++ DF Y G L ++Y + ++ IE PQ Sbjct: 110 GKYDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFA 169 Query: 321 FMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377 +M + M L +ETE + ++FYN +++ TP + +G R P Q SSC + Sbjct: 170 YMLIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIM--AGVRTPTRQFSSCVVIESD 227 Query: 378 DDLYGIFGALQENAMLAKYS--GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L GI NA++ S G+G + +R G+ I + GVIPF K Sbjct: 228 DSLQGINET--ANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAV 285 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA Y WH++ E + L+ N G + R ++ I +L ++R + Sbjct: 286 KSCSQGGIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLK 345 Query: 496 NAGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSPD L DLY ++ E + YE+ ++ R + A L+ + F Sbjct: 346 RDYITLFSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERF 404 Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS-----SEETAVCNLGSINLL 608 TG + TF D N ++V + SNLC EI L + E ++C L Sbjct: 405 NTGRIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCT------L 458 Query: 609 AHFANNQFDYDKLASTIRTA---VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 A + FD + + R A VR LDN++D + +E+A + R++G+G+ F S Sbjct: 459 AAYVLGNFDIENMEEVERIAMVMVRALDNLLDYQDYPVEQALTAKK-RRSLGVGVTNFAS 517 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L Y +A E ++ E + + I ASV LA+E+GA + + +G PID Sbjct: 518 YLADNFFTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPID- 574 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + DEL ++ + W+EL++ +K G+RNS A+ P + + + + I+P Sbjct: 575 --WYKKTVDEL-VDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPP 631 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + VK + G F V I N+E D Sbjct: 632 RGIVSVKGSKEGQFNQV----------------------------IPNVENNAD------ 657 Query: 846 ATAFEIDPMW-LIESASR--------RQKWIDQAQSLNLYLDEPSGKKL----------D 886 ID +W LI+ ++ QK++DQA S N D PS K D Sbjct: 658 ----VIDLLWTLIKKGNKPYLTLAAIMQKFVDQAISSNTSYD-PSTYKTGKVDIADVLDD 712 Query: 887 FIYRQAWLMGLKTTYYLRSRSA 908 ++ Q + GLKT YY R Sbjct: 713 MLFAQYY--GLKTLYYANVRDG 732 >gi|157955313|gb|ABW06028.1| NrdE [Bacillus thuringiensis serovar finitimus] Length = 694 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A+E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|295397899|ref|ZP_06807961.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] gi|294973879|gb|EFG49644.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] Length = 727 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 187/691 (27%), Positives = 307/691 (44%), Gaps = 96/691 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHIN-GSR-IE 315 Y+EEG ++ D + V Y+ F F+ ++ Y +Y L N G R +E Sbjct: 71 YLEEGFL------NLYDREFVKRLMQETYDFKFRFKSFMSAYKFYTQYALKTNDGKRYLE 124 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLT 374 + + A+ LA E+ A + + + + + +TPT N+G R +L SCFL Sbjct: 125 RYEDRIVFTALYLA---NGDEQVASDLRDEMINQRYQPATPTFLNAGRKRRGELVSCFLI 181 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 DD+ I + L++ GG+G + T +R G I S G+IP +K+ D+ Sbjct: 182 QATDDMNSIGRTINSALQLSRLGGGVGVNLTNIRAAGDPIKKIENASSGIIPVMKLLEDS 241 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R GA YL +H DV FL +K D++ R ++ +PD F + Sbjct: 242 FSYSNQLGQRNGAGAVYLSVFHPDVVSFLSAKKENADEKIRVKTLSLGLVVPDKFYELAE 301 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAY----ENYERQADRGEIKVFRKISAVALWRKML 550 ++ LFSP D+ +YGK + AY E Y+ + EIK KI A L + Sbjct: 302 KDEMMYLFSP---YDVERIYGKPY--AYVNITEEYDNLVNNPEIKK-SKIRARDLEDDIS 355 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE---------ITLNSSSEETAV-- 599 + E+G+P+I D N ++P G + SNLC+E I + + EE Sbjct: 356 KLQQESGYPYIINIDTVNDQNPID--GTIVMSNLCSEILQVQRPSIINNDQTFEELGTDI 413 Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIG 657 CNLGS N+ NN ++ T VR L V D + + KK N IG Sbjct: 414 SCNLGSTNI-----NNLMHSPDFGKSVDTMVRGLTYVTDASAIDVVPSIKKGNDLAHTIG 468 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716 LG MG + L + Y SPE++E D+ ++++ + AS +A+ERG + +F+ S + Sbjct: 469 LGAMGLHTYFALNEMHYGSPESIEFTDKYFLLLNYYTLVASNRIAKERGVTFENFENSTY 528 Query: 717 DQGVFPIDSIG--LLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770 G + I E A +P W L+ V+ G+ + N +A+APT Sbjct: 529 ATGEYFDKYINEETTFEFERVAAQFEGIHIPTQEDWKALRAAVQEHGLYHQNRLAVAPTG 588 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ + S S+ P Q L+ E +++ + Y+ Sbjct: 589 SISYVNETSSSLHPIIQ------------------LIEERQEKK-------TGKTYYPAP 623 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------ 882 + + +P + +A++ID +I+ + Q+ IDQ SL L++ D P+G Sbjct: 624 FLSNKTLP-----YYQSAYDIDNRRIIDIYAAAQQHIDQGMSLTLFMRSDIPAGLYPWKE 678 Query: 883 --------KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + R AW G+K+ YY+R+ Sbjct: 679 GRTSKMTTRDLNILRRYAWKRGIKSIYYVRT 709 >gi|228920163|ref|ZP_04083512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839619|gb|EEM84911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 682 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L +I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNNIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|261323426|ref|ZP_05962623.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella neotomae 5K33] gi|261299406|gb|EEY02903.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella neotomae 5K33] Length = 713 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 188/676 (27%), Positives = 301/676 (44%), Gaps = 82/676 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 81 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 + + VE + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + E Y + +I +KI+A ++ + + FE+G+P+I F+D N + Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375 Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC EI S + + CNLGS+N+ A D Sbjct: 376 PID--GRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428 Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 TI T++R L V D I C + + N AIGLG M L I Y S Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723 E V+ + +++HA+ AS +A E G SFKG DQ P Sbjct: 487 EEGVDFTNIYFYTVAYHAMRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +V++++ R E I + Y + N D+L+ Sbjct: 603 P---------------------IVSKIEIRK---EGKIGRVYYPAAFMTN-----DNLE- 632 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ D + + ++ AW G+KT YY Sbjct: 633 YYLDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 692 Query: 903 LRSRSATSVEKSTLKG 918 +R R ++E + ++G Sbjct: 693 IRLRQ-MALEGTQVQG 707 >gi|18313863|ref|NP_560530.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2] gi|18161428|gb|AAL64712.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2] Length = 849 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 167/650 (25%), Positives = 299/650 (46%), Gaps = 72/650 (11%) Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E P RVA +A +E E RA +Y+ ++ + ++P FN+ TR +SCF Sbjct: 159 ETPSMAAWRVATAVA-RELE---RAKLYYDYITQLKIVPASPFWFNAWTRKEMFASCFTL 214 Query: 375 TVPDDL--------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 V D L Y I+ AL + ++ + GG+G D++ +R G + G+ G + G + Sbjct: 215 EVEDCLSSITHPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVS 274 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 F+++ + + QGGKR+GA L WH D+ +F+ + D + N + ++ Sbjct: 275 FMRLFDANVDVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDAH-LQNFNISVFVD 333 Query: 487 DLFMKR---VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 D FM++ V ++ + L +P +D GK+ + + + ++ + V+ ++ A Sbjct: 334 DTFMEKALGVDGDSKYKLINP---RVFYDKTGKK-AVEFVDVHKETQVPKEAVWGEVDAR 389 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSS 593 L+ ++ +++G P + FK N +P + + S N C E N Sbjct: 390 QLFGEIAHGAWDSGDPGLIFKSNLNASNPLLGEEIEISNYRFTYIWRSVNPCAETVQNPF 449 Query: 594 SEETAVCNLGSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHT 642 VCNL INL+ N D++ LA R R LD+ I+ + Sbjct: 450 E----VCNLTHINLVKFVKENCAGGSFEEKLGCIDWEGLAQAARVGTRYLDDAIERSRTG 505 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I+ + N R GLG+MGF L L IPYAS EAVE+ + M +I +A+ S ELA Sbjct: 506 IKIIDEMNSATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDESAELA 565 Query: 703 QERGAYSSFKGSLWDQGVFPI----DSIGLLAE----------------VRDELAMNRTS 742 +ERG + F+ S++ +G P+ D + E +RD R Sbjct: 566 RERGPFKFFEKSVYARGEIPVLKFQDFVWRRWERIKRVYPRELQEAGDRLRDITMRTREW 625 Query: 743 RLPW-DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 P+ + L +V+ G+RNS ++IAPT + + G + ++P + ++++ G Sbjct: 626 LRPYLERLADKVRG-GVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLIE 684 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 + LK R W + + G + + +P+ K + ATA EI +W + + Sbjct: 685 YYEPGIEWLKARGYWT-PQVRKVVEETGMLRDAP-VPEAAKHLLATAMEIGWLWHVLMQA 742 Query: 862 RRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 Q+W+DQ ++++N+ + P + + + + AW +G+K R +S + Sbjct: 743 SAQQWVDQGISKTINMPANAPQ-EDVYWAFAFAWAVGVKGITVYRDKSKS 791 >gi|20090518|ref|NP_616593.1| ribonucleotide reductase [Methanosarcina acetivorans C2A] gi|19915544|gb|AAM05073.1| ribonucleotide reductase [Methanosarcina acetivorans C2A] Length = 558 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 164/595 (27%), Positives = 278/595 (46%), Gaps = 96/595 (16%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVA ++ E E +EF +L+ F+ S+PTL N+GT QL++CF+ V D + Sbjct: 37 RVARAISTDEDEY----LEFKDLMVRKIFVPSSPTLMNAGTELGQLAACFVVPVKDSVEE 92 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF AL+ A++ K GG G +++ VR G+H +G + G I F+++ N+ + Q G Sbjct: 93 IFDALKTAALIQKTGGGSGFNFSRVRPKGSHALCVDGVASGPISFMRLFNEATEVIKQFG 152 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R+GA L+ H D+ F+ + G R + N + + D F + V + ++ Sbjct: 153 RRRGANIGILDVSHDDIIPFIRAKHVEGSFR----NFNLSVMVRDAFFRLVEAGSTEEVW 208 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P + + D++ + E +WR G P + Sbjct: 209 NPRTGATVGDVFSEIVE------------------------GIWR--------NGEPGVL 236 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 F D N + +G + ++N C E L CNLGS+NL A+ + ++D L Sbjct: 237 FYDRINRDNFTPGLGDITATNPCGEEPLLPYES----CNLGSLNLSLFVADGKINWDFLR 292 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T AVR LDN IDIN + + + ++ R IGLG+MGF L L + Y S EAVE+ Sbjct: 293 ETAGKAVRFLDNEIDINVYPVPEIAEATRKTRKIGLGVMGFHDMLLKLGLSYDSTEAVEL 352 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 A++ ME I++ A+ S +LA E+G + ++ S+W+ Sbjct: 353 AEKLMEQINWAAVRESRKLAAEKGPFPEYEKSIWE------------------------- 387 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTV 801 + MRN+ AIAPT TI+ + G S I+P + +Y ++ G +F + Sbjct: 388 -------------LSMRNATLTAIAPTGTISILAGCSAGIEPVFSWVYRRTRTVGKEFLL 434 Query: 802 VNSFLVNELKQR-DLWDEAMISDLKYHDGSIGNI---ERIPDDLKKIHATAFEIDPMWL- 856 V+ K R D + + Y G++ +I E +P++ KK+ +A +I W Sbjct: 435 VHPLFEAHFKPRLSESDYNELLEHVYAHGTLQDIDDPEIVPENEKKLFRSALDIG--WKT 492 Query: 857 ---IESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 I++A +R ++++N+ +D +GK+ ++ AW GLK R+ S Sbjct: 493 HIDIQAAFQRHCHAGISKTINMPVD--AGKEDIEQALIYAWKQGLKGITIYRTGS 545 >gi|270291188|ref|ZP_06197411.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus acidilactici 7_4] gi|270280584|gb|EFA26419.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus acidilactici 7_4] Length = 721 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 181/718 (25%), Positives = 318/718 (44%), Gaps = 88/718 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L K+ +A + L + E+ ++A L+ + FD + D + Sbjct: 32 QEALAAFLKENVQANTKQFTSLRERFDYLLEEDYIEAELVEK--YSFDFIEKLYDYLRAQ 89 Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +F F ++ Y +Y L N + + + F RVAM E+ A++ + + Sbjct: 90 NFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADEIIH 148 Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +H +L SCFL DD+ I + L+K GG+G + T + Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----E 523 D++ R ++ +PD F + + + LFSP V +YGK + AY + Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVE---KVYGKPY--AYVDITK 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ + EIK + K+ A + ++ + E+G+P++ D N +P G + SN Sbjct: 324 EYDNLVNNPEIKKY-KVKARNIENEISKLQQESGYPYVVNVDTANRENPI--YGKIVMSN 380 Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +++ T + CNLGS N++ A F ++ T VR Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPHF-----GKSVETMVRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + + N IGLG MG L H+ Y P++VE + Sbjct: 436 LTFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLL 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSR 743 ++ + AS ++A+ERG + +F+ S + G + G + EL ++ + Sbjct: 496 NYWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTT 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W +LK+ V G+ + N MA+APT +I+ I + S+ P Sbjct: 556 ADWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQP------------------- 596 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +VN +++R E I + Y + N D K + +A++ID +++ + Sbjct: 597 --IVNRVEER---QEKKIGKIYYPAPYLSN------DTLKYYQSAYDIDMRKVVDIYAAA 645 Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ S+ ++ P G + L+ + A G+K+ YY+R+ Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703 >gi|259907589|ref|YP_002647945.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224963211|emb|CAX54695.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] gi|283477431|emb|CAY73347.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia pyrifoliae DSM 12163] Length = 716 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 177/644 (27%), Positives = 288/644 (44%), Gaps = 67/644 (10%) Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 R F F+ +LG Y Y L +G R + F RV M + A+ + + Sbjct: 97 RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAKGDQPLALALTDEI 154 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D++ R ++ IPD+ + N LFSP +V ++ L + ++ + Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYALPFADISMSEKYP 334 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E AD + F I+ ++ + + FE+G+P+I F+D N +P G ++ SNLC Sbjct: 335 EMLADTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVP--GRINMSNLC 390 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS +E + CNLGS+N+ AH D A T+ AVR L Sbjct: 391 SEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNV-AH----AMDSADFARTVEIAVRGLT 445 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + H++ ++ N AIGLG M L I Y S ++ + +++ Sbjct: 446 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVTY 505 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSR 743 HA+ S +LA+ER +S F S + G + +G +A + + S+ Sbjct: 506 HALRTSNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPSQ 565 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W LK+ V G+ N N AI PT +I+ I + SI P Sbjct: 566 QQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------- 606 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +V+ ++ R + Y+ N +D + ++ A++I P +I++ + Sbjct: 607 --IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQALYRDAYDIGPEAIIDTYAEA 655 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 656 TRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699 >gi|259046998|ref|ZP_05737399.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Granulicatella adiacens ATCC 49175] gi|259036317|gb|EEW37572.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Granulicatella adiacens ATCC 49175] Length = 719 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 168/659 (25%), Positives = 295/659 (44%), Gaps = 82/659 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y++ F F ++ Y +Y + N + + + F R+ E+ A + Sbjct: 85 YKKKFRFRSFMSAFKFYKQYAMKTNDGQRYL-ERFEDRIVFNALFLADGDEQLAHDLAEE 143 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + + +TPT N+G R +L SCFL DD+ I + L++ GG+G Sbjct: 144 MITQRYQPATPTFLNAGRKRRGELVSCFLIQTTDDMNSIGRTINSALQLSRIGGGVGVSL 203 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + VR G I S GV+P +K+ D+ NQ G+R GA YL +H D+ FL Sbjct: 204 SNVRAAGDPIKKIENASSGVVPIMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLS 263 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--Y 522 +K D++ R ++ +PD F + + + LFSP D+ +YG F Sbjct: 264 TKKENADEKVRVKTLSLGLVVPDKFYELIKNDDIMYLFSP---YDVERIYGVPFSYVDIT 320 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + Y+ + EI+ K+ A L ++ + E+G+P++ D N +P G + S Sbjct: 321 KEYDNMVNNPEIRK-SKLRARDLENEISKLQQESGYPYVVNIDTANRVNPID--GKIIMS 377 Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI +N++ E + CNLGS N++ + FD ++ AVR Sbjct: 378 NLCSEILQVQEPSVINNAQEYEHLGTDISCNLGSTNIVNLMKSPDFD-----RSVDVAVR 432 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N IGLG MG + L + Y SPE++E D Sbjct: 433 ALTFVTDHSSIDAVPTVKNGNSKAHTIGLGAMGLHTFFALNQMEYGSPESIEATDLYFRM 492 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--- 745 ++F+ + AS ++A+ERG ++ F+ S + G + I +++ + ++LP Sbjct: 493 LNFYTLKASNKIAKERGKSFEGFERSKYATGEYFDSYIAEEVQIQSDKVKKIFAKLPIPT 552 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W +LK+ V + G+ + N +AIAPT +I+ + S S+ P + Sbjct: 553 VEDWKQLKEEVMSGGLYHQNRLAIAPTGSISYVNETSASLHPITR--------------- 597 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L+ E +++ + Y+ + + +P + +A++ID +I+ + Sbjct: 598 ---LIEERQEKK-------TGKTYYPAPFLSNDTLP-----FYKSAYDIDMRKVIDVYAA 642 Query: 863 RQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 QK IDQ SL L++ + P G + L+ + AW G+K+ YY+R+ Sbjct: 643 AQKHIDQGMSLTLFMRSELPEGLYEWKEGRTNKMTTRDLNILRNYAWNKGIKSIYYVRT 701 >gi|157955371|gb|ABW06072.1| NrdE [Bacillus thuringiensis serovar indiana] Length = 694 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + ++GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|75759354|ref|ZP_00739451.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493186|gb|EAO56305.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|157955363|gb|ABW06066.1| NrdE [Bacillus thuringiensis serovar dendrolimus] gi|157955375|gb|ABW06075.1| NrdE [Bacillus thuringiensis serovar morrisoni] Length = 694 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|157955383|gb|ABW06081.1| NrdE [Bacillus thuringiensis serovar sotto] Length = 694 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 172/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++I+ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|118617479|ref|YP_905811.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium ulcerans Agy99] gi|118569589|gb|ABL04340.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE [Mycobacterium ulcerans Agy99] Length = 693 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 184/653 (28%), Positives = 289/653 (44%), Gaps = 75/653 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA + ++ V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDATLAEKLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P + G Sbjct: 303 DISVTEKYYEMVDDSRIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPIE--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----RTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L HI Y S E V+ + Sbjct: 415 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREHIFYGSEEGVDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F S + G F + E + E L + Sbjct: 475 IYFYAVLYHALRASNRIAVERGTRFKGFDQSKYASGEFFDKYTERVWEPKTEKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 535 AGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEG 594 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ NE +L Y+ A+EI Sbjct: 595 KIGRVYYPAPYMTNE-------------NLDYYQ------------------DAYEIGYE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 624 KIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLR 676 >gi|57014144|gb|AAT68709.2| ribonucleoside reductase alpha subunit [Borrelia hermsii] Length = 690 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 186/727 (25%), Positives = 336/727 (46%), Gaps = 97/727 (13%) Query: 224 LLEKLRREVLTTVYKKPQKATHHEM-QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282 LE+++ + L + P + H+ + LY +++ Y E A++L + LV L Sbjct: 30 FLEEVKAKSLR--FSNPNERMHYLIDNNLYEDFYKNYSE----AQILE----IYKLVELE 79 Query: 283 NDLKYERDFAFE-YLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAV 340 N F F+ Y+ Y Y L +NG + +E + + V++ LA E A+ Sbjct: 80 N-------FKFKSYMSASKFYKDYALKLNGDTYLESYEDRIIAVSLFLADGCFE---FAL 129 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + + + +TPT N+G R +L SCFL V D L I + L+K GG Sbjct: 130 KLASEMIKQRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGG 189 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + + +R G I G ++G+IP +K+ D +Q G+RKGA YL +H D+ Sbjct: 190 VALNLSNIRARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDI 249 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 E+FLD +K D++ R ++ IPD F + Q + F+P + + E + Sbjct: 250 EDFLDTKKINADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAPYSLYKATGRFMNEID 309 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 E Y+ A I + ++I A + ++ + FE+G+P+I ++ CN+ +P + +G + Sbjct: 310 FDLE-YDLLASNPNI-LKKEIKARDMLVRIARLQFESGYPYIMYQTACNLNNPLKGIGKI 367 Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLCTEI + E + C LGS+N++ + N+ F+Y T+ Sbjct: 368 KMSNLCTEIFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIV-NVVNSNFEY-----TVDI 421 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A++ L +V D + K+N+ + A+GLG+M L IPY S EA++ Sbjct: 422 AMQALTSVCDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIKNKIPYESAEAIDFVRTF 481 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSI--GLLAEVR 733 ++F++I +S+ +A+ RG + FK S + G + P + G+ + ++ Sbjct: 482 FMLLNFYSIKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTEDFSPKTEVVKGIFSGIK 541 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 L + W+ LK+ V+ G+ ++ +A+APT +I+ I + S+ P Sbjct: 542 IPL------KSDWENLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSLMP--------- 586 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +V ++ R + + Y + + +A+ +D Sbjct: 587 ------------IVEPVEARVYGNSTTYYPMPY----------LSKENALFFKSAYYMDM 624 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 LI+ S Q+ +DQ S LY+ +E S ++L +Y A GLK+ YY R+++ SV+ Sbjct: 625 RKLIDLISEAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVD 683 Query: 913 KSTLKGV 919 + L + Sbjct: 684 ECILCAI 690 >gi|229189533|ref|ZP_04316549.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus ATCC 10876] gi|228593978|gb|EEK51781.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus ATCC 10876] Length = 682 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|169630494|ref|YP_001704143.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium abscessus ATCC 19977] gi|169242461|emb|CAM63489.1| Ribonucleoside-diphosphate reductase alpha subunit [Mycobacterium abscessus] Length = 712 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 183/663 (27%), Positives = 295/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA + + ++ V Sbjct: 88 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDLQLAEKLV 147 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 148 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 204 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 205 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 264 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V + + + Sbjct: 265 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERTYGVPFADIN 324 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D G+I+ KI A ++ + + FE+G+P+I ++D N +P + G + Sbjct: 325 VT-EKYYEMVDNGQIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPIE--GKI 380 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 381 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 435 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 436 AIRALTAVSDQTHIWSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIY 495 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HA+ AS +A ERG + F S + G F + E + E L + Sbjct: 496 FYTVLYHALRASNRIAIERGTKFGGFDRSKYASGEFFDKYTDQVWEPKTEKVRQLFADAG 555 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 556 IRIPTQDDWLRLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKI 615 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G +L N+ N+E D A+EI + Sbjct: 616 GRAYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 644 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D S + ++ AW G+KT YY+R R ++E + Sbjct: 645 IDTYAAATQHVDQGLSLTLFFKDTASTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 703 Query: 916 LKG 918 ++G Sbjct: 704 VEG 706 >gi|218896384|ref|YP_002444795.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus G9842] gi|228900032|ref|ZP_04064268.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] gi|228964414|ref|ZP_04125528.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] gi|218545317|gb|ACK97711.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus G9842] gi|228795271|gb|EEM42763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] gi|228859646|gb|EEN04070.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] Length = 682 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|108798058|ref|YP_638255.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. MCS] gi|119867154|ref|YP_937106.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. KMS] gi|126433719|ref|YP_001069410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. JLS] gi|108768477|gb|ABG07199.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. MCS] gi|119693243|gb|ABL90316.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. KMS] gi|126233519|gb|ABN96919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. JLS] Length = 693 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 171/672 (25%), Positives = 276/672 (41%), Gaps = 100/672 (14%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFA----------------FEYLGLQILYD 303 I++ V+ARL + D Y+ Y RD A + +L + Sbjct: 65 IQDFVEARLGEAGLDDVARAYIV----YRRDRADLRAAKALLGVRDELKLSLAAVTVLRE 120 Query: 304 RYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-----EFYNLLSSFHFMCSTPT 357 RY L G +E R A +A E E + F L F+ ++PT Sbjct: 121 RYLLRDQRGRPVESTGEMMDRAARCVAAAEDAYEPGSSAEWTDRFSRGLRDLEFLPNSPT 180 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 L N+GT LS CF+ V D L IF L + A + + GG G ++ +R G I T Sbjct: 181 LMNAGTDLGLLSGCFVLPVEDSLRSIFATLAKAAEIQRAGGGTGFSFSRIRPDGDPITTT 240 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G + G +PF+ + + A V+ GG+R+GA A L+ H D+ +F+ +G + H Sbjct: 241 TGSACGPVPFVGLFDAAAQVVSLGGRRRGACMAVLDVSHPDIYDFIA--SKSGSTAKLPH 298 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 N + + D FM+ V E +H L K Sbjct: 299 -FNLSIGVGDAFMRAV------------ESGGMHRLVNPRTG---------------KTA 330 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 ++ A L+ + G P + F D N +P G + ++N C E+ L Sbjct: 331 ARVRADELFAAICEAANHGGDPGLVFLDTINRANPVPQRGRIEATNPCGEVPLLPYES-- 388 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNLGS+NL ++ D+ +L + AVR D+VID++ + + ++ R IG Sbjct: 389 --CNLGSVNLTRMLTGDEVDWTRLTAVTEMAVRFFDDVIDVSRYPFAELGEATRATRKIG 446 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L L IPY S EA+ + D M I A AS LA++RG++ +F S Sbjct: 447 LGVMGLAEMLARLGIPYDSEEALRLTDRVMRHIQRAAHRASRRLAEDRGSFPAFPDS--- 503 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + V++ RN+ ++APT TI+ I G Sbjct: 504 ---------------------------------RLVRSGPRRNAQVTSVAPTGTISLIAG 530 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P + Y ++ + VN + R + + +I+++ G + + Sbjct: 531 TTAGIEPMFAIAYTRAILGRHLLEVNPTFDRLARDRGFYRDELITEIAER-GGVRRCPSL 589 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896 P +++ TA EI P W + + Q+ +D A S + L + + IY +AW Sbjct: 590 PAEVRSAFPTATEISPDWHLRMQAVVQRHVDAAVSKTVNLPSTATPADVRDIYLKAWKAK 649 Query: 897 LK--TTYYLRSR 906 +K T Y SR Sbjct: 650 VKGVTVYRYGSR 661 Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 14/105 (13%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-IKNLTEQTVTRLLQHNK 88 +V +R+G + FD +I A+++A +R + D + +TV L Sbjct: 9 RVRRRDGTLVPFDAGRIEAAVLRA---------AREVACDDPDMPGAVARTVADTLGPGT 59 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 + +E IQD VE L ++G + R Y++YR +R+D+RAA++ Sbjct: 60 A----DVETIQDFVEARLGEAGLDDVARAYIVYRRDRADLRAAKA 100 >gi|269850295|gb|AAP25314.2| ribonucleoside-diphosphate reductase, alpha subunit, group I intron-containing [Bacillus anthracis str. Ames] Length = 694 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDSKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESEEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A+E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|157955309|gb|ABW06025.1| NrdE [Bacillus thuringiensis serovar canadensis] Length = 694 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|13358415|ref|NP_078756.1| Ribonucleotide reductase large subunit [Lymphocystis disease virus 1] Length = 547 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 165/569 (28%), Positives = 248/569 (43%), Gaps = 90/569 (15%) Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ S+P L +S P +CF+ V +++ I E L+ GG W Sbjct: 53 FIYSSPILSDSDDGLP--IACFVMDVQNNIKDIIQHSVETKWLSINGGGCAGYW------ 104 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 + + S G IPFL + +A QG RKG+ AYL+ H D+ EF+++R TG Sbjct: 105 -GQLKSPSDTSCGPIPFLHTIDADVLAYKQGSTRKGSYAAYLDISHPDILEFINMRTPTG 163 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D R+ +++ + D FM V QN W L P Sbjct: 164 DLNRKNLNLHHGVNLTDAFMIAVEQNLNWNLIEPHT------------------------ 199 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV------VHSSNL 584 +IK + AV LWR +L F TG P++ F D N H G+ + SSNL Sbjct: 200 -NQIK--ETVPAVQLWRLLLETRFRTGEPYLNFIDTAN---RALHPGLKAKNLKIKSSNL 253 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C EI L S + TAVC L S+NL + D D + I+ VLD I + Sbjct: 254 CNEIHLASDEQRTAVCCLASLNLEKY--EEWCDTDLVECCIKMLNNVLDYFIFKAPIELS 311 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 KA S R+IGLG G+ L IP+ SP+A+ + I A+ + LAQ Sbjct: 312 KAVYSATCERSIGLGATGWAYYLMKNDIPFDSPKALFLTKLIFGNIKIKAVKTTCLLAQR 371 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G P +LK +RN++ + Sbjct: 372 FG--------------------------------------PAPDLK----AYNVRNAHLL 389 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAP + + I S SI+P N YV +G ++N +L +L+ + E + + Sbjct: 390 AIAPNSNTSCILNTSPSIEPIAGNAYVHKTRAGTHLIINPYLKQKLRNYNQDTEETWNSI 449 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 DGS+ ++ + + K + TA+EI+ + L+E A+ RQK+I Q QSLNL+ + +K Sbjct: 450 ILKDGSVQHLTFLSHEEKAVFKTAYEINALVLVEQAAVRQKYICQGQSLNLFFPLNTQRK 509 Query: 885 -LDFIYRQAWLMGLKTTYYLRSRSATSVE 912 L ++ AW +G K YYLR+ ++ S E Sbjct: 510 LLHTVHFNAWKLGCKGLYYLRTSASKSSE 538 >gi|220912865|ref|YP_002488174.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter chlorophenolicus A6] gi|219859743|gb|ACL40085.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter chlorophenolicus A6] Length = 712 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 186/660 (28%), Positives = 294/660 (44%), Gaps = 74/660 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y++ F FE +LG Y Y L +G R +E + VA+ LA E+ A++ Sbjct: 93 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLA---RGNEQLALQMV 149 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT N+G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 150 DEIIDGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 209 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 210 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 269 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ IPD+ + ++ LFSP D+ +YG F Sbjct: 270 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKDDDMYLFSP---YDVEKVYGMPFSDVS 326 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D IK KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 327 VTEKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPID--GKII 383 Query: 581 SSNLCTEITLNS---------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI S S ++T CNLGS+N+ D TI TA Sbjct: 384 MSNLCSEILQVSQPTTYHDDLSYDDTGKDISCNLGSLNIA-----KTMDSPDFGLTIETA 438 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D+ N ++ K N AIGLG M L + Y S E ++ + Sbjct: 439 IRSLSAVSDMSNITSVPSIAKGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYF 498 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNR 740 + FHA+ AS LA E G + F+ S + G F + + +VR+ ++ Sbjct: 499 YSVVFHAVRASNLLAIETGQTFGGFEKSKYASGEFFDKYTEQEWVPQTEKVRELFKDVHI 558 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 ++ W LK V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 559 PTQADWLALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKLGRV 618 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +L N+ N+E D A+EI +I++ Sbjct: 619 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKVIDT 647 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 648 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 706 >gi|30019504|ref|NP_831135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus ATCC 14579] gi|29895048|gb|AAP08336.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus cereus ATCC 14579] gi|157955304|gb|ABW06021.1| NrdE [Bacillus thuringiensis serovar aizawai] gi|157955327|gb|ABW06039.1| NrdE [Bacillus thuringiensis serovar entomocidus] gi|157955331|gb|ABW06042.1| NrdE [Bacillus thuringiensis serovar galleriae] gi|157955335|gb|ABW06045.1| NrdE [Bacillus thuringiensis serovar kurstaki] gi|157955343|gb|ABW06051.1| NrdE [Bacillus thuringiensis serovar tolworthi] gi|157955351|gb|ABW06057.1| NrdE [Bacillus thuringiensis serovar colmeri] gi|157955379|gb|ABW06078.1| NrdE [Bacillus thuringiensis serovar ostriniae] gi|157955395|gb|ABW06090.1| NrdE [Bacillus thuringiensis serovar tohokuensis] gi|157955404|gb|ABW06097.1| NrdE [Bacillus thuringiensis serovar wuhanensis] Length = 694 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|13242411|ref|NP_077434.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 9] gi|11036563|gb|AAG27192.1|AF275348_12 ribonucleotide reductase, large subunit [Cercopithecine herpesvirus 9] Length = 783 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 172/668 (25%), Positives = 306/668 (45%), Gaps = 79/668 (11%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------ 340 LGLQ + Y+ ++L + ++IE + FF+R+A + ++ + A Sbjct: 126 LGLQSALKYEEFYLTKLEDNKIESLEQFFIRLATAVTIEVMKIPNIAYLIPGTYSAYTWT 185 Query: 341 ----EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENA 391 F+N+LS + +TP + G +SC++ T V D + I G + Sbjct: 186 DMCSVFFNMLSRQLIIPATPVMMFLGRETGATASCYIMDPKSTNVRDAIRAITGDV---G 242 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 + + GG+G + + H +++G + LK+ + +A+N +R VC Y Sbjct: 243 TVLQSRGGVGISLQSLNIVPNHT-----ETKGALAILKLLDSMVMAINSDSERPTGVCVY 297 Query: 452 LETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSP 504 +E WH+D+ L R D+ R ++ W+PDLF+KR TQN WTLF Sbjct: 298 VEPWHVDIRSILCTRGMLVRDEAYRCDNIFYCMWMPDLFLKRYIQYVQGTQNVTWTLFD- 356 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + L +LYG +F Y ERQ ++++ + + +T G P++ FK Sbjct: 357 NRANVLCNLYGDDFTAEYLKLERQGIGVTTIPIQELAFLIVKSSAVT-----GSPFVMFK 411 Query: 565 DPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QF 616 D CN R+ +V + SNLCTE+ ++ VCNL +IN+ N +F Sbjct: 412 DACN-RNYHMNVQGDAITGSNLCTEVIQKANPNMHGVCNLANINIANCILNGDEDGPPEF 470 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + L +RTAV L+ V+ +K+ + +R++G+G+ G +A L + Sbjct: 471 SFADLTFAVRTAVVFLNGVLAAGNFPCKKSCEGVANNRSLGIGIQGLHTAFLRLGLDLTC 530 Query: 677 PEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 P A + E E + + A+ S+ + ++ G + F+ S + G D + + Sbjct: 531 PRARRLNVEITESMLYEAMFVSMNMCKQCGLQPFHEFENSKYASGWLHFDGFPTCSYLN- 589 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 LPW+EL+ + G+ NS +A PT A + S+ P + N++ K Sbjct: 590 ---------LPWEELRDDICQYGLYNSQFLAFMPTVASAQVTECSEGFSPVFTNMFSKVT 640 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAF 849 +SG+ N L++EL++ +E ++ + + ++ R L H TAF Sbjct: 641 ISGETLRPNLELMDELRKLYPHEEDRSRIIQQLEKNQWSVLRTFGCLNARHPLYKFKTAF 700 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK-----LDFIYRQAWLMGLKT-TYY 902 E L++ R +IDQ+QS++L+++E P+G ++ + R A+ GLKT YY Sbjct: 701 EYSQADLVDMCVDRAPFIDQSQSMSLFIEERPNGAVSAATIMNLLVR-AYKGGLKTGMYY 759 Query: 903 LRSRSATS 910 + R AT+ Sbjct: 760 CKIRKATN 767 >gi|322831490|ref|YP_004211517.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp. Y9602] gi|321166691|gb|ADW72390.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp. Y9602] Length = 720 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 187/663 (28%), Positives = 301/663 (45%), Gaps = 74/663 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F+ +LG Y Y L +G R +E + VA+ LA + + A F Sbjct: 95 YAKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGDIQ---LAGHFV 151 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + S F +TPT N G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 152 DEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAF 211 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R +GA I +S GVIP +K+ D NQ G R+GA YL H D+ F Sbjct: 212 MLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRF 271 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + N LFSP V ++ + E I+ Sbjct: 272 LDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYHVEKVYGVPMSEISIS- 330 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y + I KI+A ++ + + FE+G+P++ F+D N +P + G ++ S Sbjct: 331 EKYREMVNDKRIHK-SKINAREFFQVLAEIQFESGYPYMMFEDTVNRANPIK--GRINMS 387 Query: 583 NLCTEI-TLNS--------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI +NS S +E CNLGS+N+ + D +T+ AVR Sbjct: 388 NLCSEILQVNSPTIYGEDLSYQEIGKDISCNLGSLNIAS-----AMDSPDFGNTVEMAVR 442 Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D++ ++ + N AIGLG M L I Y S E ++ + Sbjct: 443 ALTAVSDMSHIRSVPSIDQGNQDSHAIGLGQMNLHGYLCRERIYYGSEEGLDFTNIYFCT 502 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--GLLA------EVRDELAMNR 740 ++FHAI AS ++A ER ++ F S + G + + L A E EL + Sbjct: 503 VAFHAIRASNQIAIERQQSFKGFSDSTYASGAYFDKYVDDALAAKWQPKTERVRELFADA 562 Query: 741 TSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 +P W LK V G+ N N A+ PT +I+ I + SI P Sbjct: 563 GIAIPTTADWAALKASVMQHGLYNQNLQAVPPTGSISYINNSTSSIHP------------ 610 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 +V+ ++ R E I + Y + N D+L + A+EI P + Sbjct: 611 ---------IVSRVEIRK---EGKIGRVYYPAAFMTN-----DNLD-YYQDAYEIGPEKI 652 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 653 IDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWRKGIKTIYYIRLRQ-MALEGTE 711 Query: 916 LKG 918 ++G Sbjct: 712 VQG 714 >gi|315445212|ref|YP_004078091.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. Spyr1] gi|315263515|gb|ADU00257.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. Spyr1] Length = 722 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 182/663 (27%), Positives = 296/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F ++G Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 98 DRAYAKKFRFPTFVGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDTVLAEKLV 157 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 158 D---EIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 214 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 215 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 274 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L + Sbjct: 275 FRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 334 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I ++D N +P G + Sbjct: 335 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPID--GKI 390 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 391 THSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTIEV 445 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 ++R L V D + ++ ++ N++ AIGLG M L I Y S E V+ + Sbjct: 446 SIRALTAVSDQTHIWSVPSIEQGNNSSHAIGLGQMNLHGYLARERIFYGSDEGVDFTNIY 505 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HA+ AS +A ERG A+ F+ S + G F + E + E L + Sbjct: 506 FYCVLYHALRASNRIAIERGTAFGGFEKSKYKSGEFFDKYTDQVWEPKTEKVRGLFADAG 565 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 R+P W +LK V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 566 IRIPDQEDWKQLKASVQEHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEGKI 625 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G ++ NE N+E D A+EI + Sbjct: 626 GRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGYEKV 654 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 655 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 713 Query: 916 LKG 918 ++G Sbjct: 714 VEG 716 >gi|206967719|ref|ZP_03228675.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus AH1134] gi|228907083|ref|ZP_04070947.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 200] gi|228951832|ref|ZP_04113930.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043193|ref|ZP_04190916.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH676] gi|229069002|ref|ZP_04202295.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus F65185] gi|229078636|ref|ZP_04211193.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock4-2] gi|229126768|ref|ZP_04255780.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-Cer4] gi|229144055|ref|ZP_04272471.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-ST24] gi|229149652|ref|ZP_04277883.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus m1550] gi|229177858|ref|ZP_04305231.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus 172560W] gi|296502032|ref|YP_003663732.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus thuringiensis BMB171] gi|206736639|gb|EDZ53786.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus AH1134] gi|228605649|gb|EEK63097.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus 172560W] gi|228633862|gb|EEK90460.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus m1550] gi|228639452|gb|EEK95866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-ST24] gi|228656708|gb|EEL12534.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-Cer4] gi|228704706|gb|EEL57135.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock4-2] gi|228714114|gb|EEL65996.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus F65185] gi|228726155|gb|EEL77389.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH676] gi|228807755|gb|EEM54276.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228852587|gb|EEM97377.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 200] gi|296323084|gb|ADH06012.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus thuringiensis BMB171] Length = 682 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|296140661|ref|YP_003647904.1| ribonucleoside-diphosphate reductase, subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296028795|gb|ADG79565.1| ribonucleoside-diphosphate reductase, alpha subunit [Tsukamurella paurometabola DSM 20162] Length = 727 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 191/672 (28%), Positives = 295/672 (43%), Gaps = 90/672 (13%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R + F RV M L L + + EK A Sbjct: 103 DAAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLADGD-EKLAT 159 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 160 SLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 219 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 220 VALLLSNIREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 279 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + N LFSP D+ +YG F Sbjct: 280 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNDDMYLFSP---YDVERVYGVPFA 336 Query: 520 IA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y D I+ KI+A ++ + + FE+G+P+I ++D N +P G Sbjct: 337 DVNVTEKYHEMVDDSRIRK-TKINAREFFQTLAELQFESGYPYIMYEDTVNRANPI--AG 393 Query: 578 VVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI T N + CNLGS+N+ D +TI Sbjct: 394 KITHSNLCSEILQVSTPSTYNDDLSYAEIGKDISCNLGSLNIA-----KTMDSPDFGATI 448 Query: 626 RTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V D T + + N+ AIGLG M L + Y S E V+ + Sbjct: 449 ETAIRGLTAVSDQTAITSVPSIEHGNNLSHAIGLGQMNLHGYLARERVFYGSEEGVDFTN 508 Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDS---------IGLLAE 731 + FHAI AS +A+ERG ++ F+ S + G F ID IGL A+ Sbjct: 509 IYFYTVLFHAIRASNAIARERGQSFGGFEDSKYASGEFFDKYIDQEWKPATDKVIGLFAD 568 Query: 732 VRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 R+P W LK V+ G+ N N A+ PT +I+ I + SI P Sbjct: 569 SE--------IRIPTQDDWRALKADVQQYGLYNQNLQAVPPTGSISYINHSTSSIHPVAA 620 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + ++ E I + Y + N D+L+ + Sbjct: 621 KIEIRK------------------------EGKIGRVYYPAPYMDN-----DNLE-YYQD 650 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 651 AYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLR 710 Query: 907 SATSVEKSTLKG 918 ++E + ++G Sbjct: 711 Q-MALEGTEVEG 721 >gi|269957221|ref|YP_003327010.1| ribonucleoside-diphosphate reductase subunit alpha [Xylanimonas cellulosilytica DSM 15894] gi|269305902|gb|ACZ31452.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylanimonas cellulosilytica DSM 15894] Length = 718 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 180/650 (27%), Positives = 293/650 (45%), Gaps = 71/650 (10%) Query: 285 LKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVE 341 L Y +DF F+ +LG Y Y L +G + +E + VA+GLA + + + VE Sbjct: 95 LAYSKDFRFDTFLGAFKYYTSYTLKTFDGKKYLERFEDRVSMVALGLADGDEQLARDIVE 154 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + + F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 155 ---EVVAGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIARGINSALQLSKRGGGV 211 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 212 ALLLSNIREHGAPIKHIQNQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIM 271 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLD ++ D++ R ++ IPD+ + QN LFSP +V ++ + + I Sbjct: 272 RFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKQNKDMHLFSPYDVERVYGVPFADVSI 331 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 + E Y+ I+ ISA ++ + + FE+G+P+I F+D N +P + G + Sbjct: 332 S-EKYDELVADDRIRK-TTISARDFFQTLAELQFESGYPYIMFEDTVNKANPIK--GRIT 387 Query: 581 SSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI T ++ +E+ + CNLGS+N+ D TI TA Sbjct: 388 HSNLCSEILQVSTPSTFNEDLSYDHVGRDISCNLGSLNIA-----KAMDSPDFGHTIDTA 442 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + ++ K +N AIGLG M L + Y S E V+ + Sbjct: 443 IRALTAVSDQTSIESVPSVKHANELGHAIGLGQMNLHGYLARERVFYGSEEGVDFTNIYF 502 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLAEVRDELAM 738 +++HAI+AS LA ERG A+ F+ S + G + + +A++ + + Sbjct: 503 YTVAYHAIAASNRLAIERGRAFGGFEDSKYATGEYFDKYTEQEWTPATARVAQLFADAGV 562 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797 ++ W LK V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 563 AIPTQDDWRALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVPAKIEIRKEGKLG 622 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F+ N+ N+E D A+EI +I Sbjct: 623 RVYYPAPFMTND-----------------------NLEYYQD--------AYEIGYEKII 651 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 652 DTYAAATQHVDQGLSLTLFFKDTVTTRDVNRAQIYAWRKGIKTLYYIRLR 701 >gi|211638142|emb|CAR66768.1| ribonucleoside-diphosphate reductase 1 subunit alpha (ec 1.17.4.1 (ribonucleoside-diphosphate reductase 1 r1 subunit) (ribonucleotid reductase 1) (b1 protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 626 Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 180/644 (27%), Positives = 280/644 (43%), Gaps = 73/644 (11%) Query: 289 RDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFY 343 RD F Y ++ L +Y + + G E Q ++ VA L KE R FY Sbjct: 2 RDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL-FSSYPKETRLDYIRRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 + +S+F TP + +G R P Q SSC L D L I G+G Sbjct: 61 DAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATSSAIVKYVSQRAGIG 118 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R +G+ I G IPF K + +QGG R GA + WH++VE Sbjct: 119 INAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPLWHLEVES 178 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEF 518 L L+ N G + R M+ + L +R+ + TLFSP +V L+D + EF Sbjct: 179 LLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGEDITLFSPSDVPGLYDAFFTNQDEF 238 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVG 577 E Y YE+ ++ + +++ AV L+ M+ TG +I D CN SP V Sbjct: 239 ERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQERASTGRIYIQNVDHCNTHSPFDPSVA 294 Query: 578 VVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 V SNLC EI L N + E A+C L + NL A + D+L AV Sbjct: 295 PVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSAFNLGA-----IENLDELEELAILAV 349 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R LD ++D + I AK+ R +G+G++ + L Y+ A + ++ E Sbjct: 350 RALDALLDYQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHGARYSDGSANNLTHKTFEA 409 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I ++ + AS ELA+E+GA FK + + QG+ PID+ + D L N W+ L Sbjct: 410 IQYYLLKASNELAKEQGACPWFKETTYSQGILPIDT---YKKTLDTLT-NEPLHYDWETL 465 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + +K G+RNS ++ P+ T + I + I+P + +K++ G V V E Sbjct: 466 RSDIKQYGLRNSTLSSLMPSETSSQISNATNGIEPPRGYISIKASKDGILRQV----VPE 521 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +R D ++ + +DG ++ QK+IDQ Sbjct: 522 Y-ERLKGDYELLWQMPGNDG--------------------------YLQLVGIMQKFIDQ 554 Query: 870 AQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGLKTTYYLRSR 906 + S N D PSGK ++ + + A+ G+KT YY +R Sbjct: 555 SISANTNYDPARFPSGKVPMNQLLKDLLLAYKYGVKTLYYHNTR 598 >gi|157955317|gb|ABW06031.1| NrdE [Bacillus thuringiensis serovar pakistani] Length = 694 Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|262203178|ref|YP_003274386.1| ribonucleoside-diphosphate reductase subunit alpha [Gordonia bronchialis DSM 43247] gi|262086525|gb|ACY22493.1| ribonucleoside-diphosphate reductase, alpha subunit [Gordonia bronchialis DSM 43247] Length = 731 Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 192/694 (27%), Positives = 305/694 (43%), Gaps = 87/694 (12%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310 PE RY E VK+ H Y + F F +LG Y Y L + Sbjct: 91 PEVLARYDREFVKSLFGH---------------AYAKKFRFPTFLGAFKYYTSYTLKTFD 135 Query: 311 GSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQL 368 G R +E + VA+ LA +T + V+ + F +TPT NSG + + Sbjct: 136 GKRYLERFEDRVCMVALTLADGDTALARNLVD---EIIDGRFQPATPTFLNSGKKQRGEP 192 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I ++ L+K GG+ + +R GA I +S GVIP + Sbjct: 193 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIM 252 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 253 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 312 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + N LFSP +V ++ + + + + +E D+ K KI A ++ Sbjct: 313 TFQLAKANDDMYLFSPYDVERVYGVPFADINVTDKYHEMVEDKRIRKT--KIKAREFFQT 370 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-- 599 + + FE+G+P+I F+D N +P G + SNLC+EI T N + V Sbjct: 371 LAELQFESGYPYIMFEDTVNRANPID--GKITHSNLCSEILQVSTPSTFNDDLSYSHVGK 428 Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRA 655 CNLGS+N+ D L TI TA+R L V D T + +K N+ A Sbjct: 429 DISCNLGSLNIA-----KAMDSPDLGQTIETAIRGLTAVSDQTAITSVPSIEKGNNDSHA 483 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS ++A+ERG +++ F+ S Sbjct: 484 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNKIARERGHSFAGFEKS 543 Query: 715 LWDQGVFPIDSIGLLAE-----VRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E VRD + ++ ++ W ELK V G+ N N A+ Sbjct: 544 KYASGEFFDKYTEKVWEPETQKVRDLFGQAGIHIPTQDDWRELKAAVARDGIYNQNLQAV 603 Query: 767 APTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + + K G F+ N+ Sbjct: 604 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPFMDND---------------- 647 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 N+E D A+EI +I++ + + +DQ SL L+ D + + Sbjct: 648 -------NLEYYQD--------AYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 692 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 ++ AW G+KT YY+R R ++E + ++G Sbjct: 693 VNRAQIYAWRKGIKTLYYIRLRQ-MALEGTEVEG 725 >gi|238755710|ref|ZP_04617044.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] gi|238706077|gb|EEP98460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] Length = 705 Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 181/666 (27%), Positives = 293/666 (43%), Gaps = 83/666 (12%) Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF + Y + F F +LG Y Y L +G R +E + VA+ LA Sbjct: 72 DFSFIKSLFQQAYAKKFRFPTFLGAFKYYTSYTLKTFDGQRYLERYEDRICMVALTLAAG 131 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + VE + S F +TPT N G + +L SCFL + D++ I A+ Sbjct: 132 DQTLAHHLVE---EMISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAVNSA 188 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA Sbjct: 189 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 248 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP ++ + Sbjct: 249 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDIELV 308 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + E ++ E Y I+ KI A ++ + + FE+G+P++ F+D N Sbjct: 309 YGVPMSEISVS-EKYREMVGNKRIRK-SKIRAREFFQLLAEIQFESGYPYLMFEDTVNKA 366 Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618 +P + G ++ SNLC+EI +N +E + CNLGS+N+ D Sbjct: 367 NPIK--GRINMSNLCSEILQVNQPTEYHEDLSYKHIGKDISCNLGSLNIA-----RTMDS 419 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A TI TA+R L V D+ + ++ K N AIGLG M L I Y S Sbjct: 420 PNFAQTIETAIRGLTAVSDMSHIRSVPSIDKGNQESHAIGLGQMNLHGYLARERIYYGSE 479 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA++ + +++HA+ AS +LA ER S FKG +D+ + S ++ +++ Sbjct: 480 EALDFTNIYFYTVAYHAMRASNQLAIERA--SRFKG--FDESHYASGS--YFSKYIEQVW 533 Query: 738 MNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + +T R+ W L+ V G+ N N A+ PT +I+ I + SI Sbjct: 534 LPKTPRVQTLFTDACIPIPTQQDWAALRHSVMEHGLYNQNLQAVPPTGSISYINHATSSI 593 Query: 783 DPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 P + + K G ++ NE +L Y+ Sbjct: 594 HPIVSQIEIRKEGKIGRVYYPAPYMTNE-------------NLDYYQ------------- 627 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900 A++I P +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 628 -----DAYQIGPEKMIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTL 682 Query: 901 YYLRSR 906 YY+R R Sbjct: 683 YYIRLR 688 >gi|297567588|ref|YP_003686559.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946] gi|297567763|ref|YP_003686734.1| NrdI protein [Meiothermus silvanus DSM 9946] gi|296852037|gb|ADH65051.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946] gi|296852212|gb|ADH65226.1| NrdI protein [Meiothermus silvanus DSM 9946] Length = 692 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 176/681 (25%), Positives = 304/681 (44%), Gaps = 81/681 (11%) Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHIN 310 Y ++F RY E ++ +HE L + F FE ++ + Y Y L Sbjct: 57 YEDFFARYTPEFLQE--IHE-------------LAFSYRFEFESFMAISKFYKDYALKTG 101 Query: 311 --GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQ 367 G +E + VA+ LA K E + RA + + + +TPT N+G R + Sbjct: 102 DKGQYLEDYPERVVAVALHLA-KGDEAQARA--YVRAMMERRYQPATPTFLNAGRARRGE 158 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L SCFL V D L I L L+K GG+ + + +R G I G G ++GV+P Sbjct: 159 LVSCFLLEVDDSLDSIGYNLNAAMQLSKIGGGVALNLSRLRARGEPIKGVEGAAKGVVPV 218 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D +Q G+RKGA YL +H D+EE L+ +K D++ R + +PD Sbjct: 219 MKLLEDAFNYADQMGQRKGAGAVYLNIFHWDLEEVLETKKINADEKSRIQTLALGLVVPD 278 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 F + + + +F+P V + E ++ YE + E+K R + A + Sbjct: 279 KFFQLAAEGKPFYVFAPYSVYRAFGVPLDEMDLD-TRYEELLEHPEVKK-RPLDAREILT 336 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA--------- 598 ++ + FE+G+P++ ++ N +P + +G + SNLCTEI + Sbjct: 337 RIARLQFESGYPYLIYRSTANRANPLKGLGQIKMSNLCTEIFQIQTPSRVGPYGTPEVVG 396 Query: 599 ---VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHR 654 CNLGS+N++ N + L ++RTA L V D + + ++N Sbjct: 397 YDVSCNLGSLNIV-----NVMEGRALRESVRTATDALTAVSDQSEVAQVPGVARANRELH 451 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713 AIGLG M L IPY S EA E A ++++++ S+E+A+ RG + F+G Sbjct: 452 AIGLGAMNLHGYLAKNEIPYESAEAREFARAFFMAVNYYSLERSMEIARARGQTFVGFEG 511 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIA 767 S + G + + E + + +P W L ++V+ G+ ++ +AIA Sbjct: 512 SDYASGAYFAKYLERDWRPTGESVKDLFAGMPLPGPKEWARLAEQVQEHGLYHAYRLAIA 571 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ + + S+ P +++ G+ T + V L LW Sbjct: 572 PTQSISYLQNATPSVAPITD--LIETRTYGNATTY--YPVPYLSPETLW----------- 616 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 + +A+ +D +I+ + Q+ +DQ S L++D + S ++L Sbjct: 617 ----------------YYKSAYRMDMYRVIDLVAGIQEHVDQGVSTVLFVDSQTSTRELA 660 Query: 887 FIYRQAWLMGLKTTYYLRSRS 907 +Y AW GLK+ YY R+++ Sbjct: 661 RLYIYAWQKGLKSLYYTRTKN 681 >gi|238695117|ref|YP_002922311.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE] gi|220029253|gb|ACL78188.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE] Length = 747 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 208/799 (26%), Positives = 345/799 (43%), Gaps = 108/799 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205 ++ G + F +++ I+E A G +V + + +G+S +D++ LI + Sbjct: 5 VVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKVA 63 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + + P+Y V + + LR+ +VY + Q + + R I G Sbjct: 64 ADNITVETPDYQYVASNLAMFALRK----SVYGQFQPIDFYS-------HIERNIATGKY 112 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 R + + ++ YL + ++ DF Y G L ++Y + ++ IE PQ +M Sbjct: 113 DREILQKYSHEEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYML 172 Query: 324 VAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDL 380 + M L +ETE + ++FYN +++ TP + +G R P Q SSC + D L Sbjct: 173 IGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIM--AGVRTPTRQFSSCVVIESDDSL 230 Query: 381 YGIFGALQENAMLAKYS--GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 GI NA++ S G+G + +R G+ I + GVIPF K + Sbjct: 231 QGINET--ANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSC 288 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E + L+ N G + R ++ I +L ++R + Sbjct: 289 SQGGIRGGAATLYYPIWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDY 348 Query: 499 WTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 TLFSPD L DLY ++ E + YE+ ++ R + A L+ + F TG Sbjct: 349 ITLFSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERFNTG 407 Query: 558 HPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS-----SEETAVCNLGSINLLAHF 611 + TF D N ++V + SNLC EI L + E ++C LA + Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCT------LAAY 461 Query: 612 ANNQFDYDKLASTIRTA---VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 FD + + R A VR LDN++D + +E+A + R++G+G+ F S L Sbjct: 462 VLGNFDIENMEEVERIAMVMVRALDNLLDYQDYPVEQALTAKK-RRSLGVGVTNFASYLA 520 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 Y +A E ++ E + + I ASV LA+E+GA + + +G PID Sbjct: 521 DNFFTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPID---W 575 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + DEL ++ + W+EL++ +K G+RNS A+ P + + + + I+P Sbjct: 576 YKKTVDEL-VDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGI 634 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK + G F V I N+E D Sbjct: 635 VSVKGSKEGQFNQV----------------------------IPNVENNAD--------- 657 Query: 849 FEIDPMW-LIESASR--------RQKWIDQAQSLNLYLDEPSGKKL----------DFIY 889 ID +W LI+ ++ QK++DQA S N D PS K D ++ Sbjct: 658 -VIDLLWTLIKKGNKPYLTLAAIMQKFVDQAISSNTSYD-PSTYKTGKVDIADVLDDMLF 715 Query: 890 RQAWLMGLKTTYYLRSRSA 908 Q + GLKT YY R Sbjct: 716 AQYY--GLKTLYYANVRDG 732 >gi|188533085|ref|YP_001906882.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia tasmaniensis Et1/99] gi|188028127|emb|CAO95984.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia tasmaniensis Et1/99] Length = 693 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 178/646 (27%), Positives = 286/646 (44%), Gaps = 71/646 (10%) Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 R F F+ +LG Y Y L +G R + F RV M + A+ + + Sbjct: 74 RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAKGDQPLALALTDEI 131 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 132 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 191 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 192 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDT 251 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D++ R ++ IPD+ + N LFSP +V ++ L + I+ + + Sbjct: 252 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQQMALFSPYDVERIYGLPFADISISEKYH 311 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E D + F I+ ++ + + FE+G+P+I F+D N +P G ++ SNLC Sbjct: 312 EMLNDARIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 367 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS +E + CNLGS+N+ AH D A T+ AVR L Sbjct: 368 SEILQVNSPTEYHDDLSYRRIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGLT 422 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + H++ ++ N AIGLG M L I Y S ++ + +++ Sbjct: 423 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNIYFYTVTY 482 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRT 741 HA+ S +LA+ER +S F S + G + P S +A + + Sbjct: 483 HALRTSNQLARERSTTFSGFAQSRYASGEYFNPYLEQSWQPRTS--QVAALFANAGIAIP 540 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 +R W LK V G+ N N AI PT +I+ I + SI P Sbjct: 541 TRQQWQTLKDAVMQYGLYNQNLQAIPPTGSISYINHATSSIHP----------------- 583 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +V+ ++ R + Y+ N +D + + A++I P +I++ + Sbjct: 584 ----IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQAFYRDAYDIGPEAIIDTYA 630 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 631 EATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 676 >gi|254776338|ref|ZP_05217854.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium avium subsp. avium ATCC 25291] Length = 693 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 182/666 (27%), Positives = 298/666 (44%), Gaps = 78/666 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 129 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L + Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 305 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 306 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 361 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 362 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 416 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 417 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIY 476 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HA+ AS +A ERG + F+ S + G F + E E L + Sbjct: 477 FYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAG 536 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 537 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 583 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853 +V++++ R +G IG + + +D + + A+EI Sbjct: 584 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQDAYEIGY 622 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 623 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 681 Query: 913 KSTLKG 918 + ++G Sbjct: 682 GTEVEG 687 >gi|118464322|ref|YP_883081.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium avium 104] gi|118165609|gb|ABK66506.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium avium 104] Length = 705 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 182/666 (27%), Positives = 298/666 (44%), Gaps = 78/666 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 81 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 140 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 141 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 197 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 198 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 257 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L + Sbjct: 258 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 317 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 318 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 373 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 374 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 428 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 429 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIY 488 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HA+ AS +A ERG + F+ S + G F + E E L + Sbjct: 489 FYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAG 548 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 549 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 595 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853 +V++++ R +G IG + + +D + + A+EI Sbjct: 596 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQDAYEIGY 634 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 635 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 693 Query: 913 KSTLKG 918 + ++G Sbjct: 694 GTEVEG 699 >gi|126460402|ref|YP_001056680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum calidifontis JCM 11548] gi|126250123|gb|ABO09214.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum calidifontis JCM 11548] Length = 853 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 170/650 (26%), Positives = 297/650 (45%), Gaps = 78/650 (12%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQ 388 +RA +Y+ ++S + ++P FN+ T +SCF+ + D L I + L Sbjct: 177 ERARLYYDYITSLKLIPASPYWFNAWTSKEMFASCFILMIEDCLSSITHPGKRCIYDVLT 236 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + ++ + GG+G D++ +R G + G+ G + G I F+K+ + + QGGKR+GA Sbjct: 237 RSGLIQQAGGGVGYDFSLLRPEGDVVRGSAGVASGPISFMKLFDANVEVIKQGGKRRGAQ 296 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKR---VTQNAGWTLFSP 504 L WH D+ +F+ + TG+ + + N + + D FM++ V ++ + L +P Sbjct: 297 MGTLHVWHPDIRKFI--KAKTGELKDVHLQNFNISVVVDDAFMEKALDVDKDPNYPLVNP 354 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 V + L K E+ E Q + ++A L+R+++ +++G P + FK Sbjct: 355 RIV--VEKLGIKPIEVLELTREVQLPKD--ATVGSVNAKELFREIVEGAWDSGDPGLIFK 410 Query: 565 DPCNIRSPQQHVGV------VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615 N + +V V +N C E+ + VCNL INL+ Sbjct: 411 SNMNASNSLLYVNVDGDRYVWFGTNPCAEV----PGADKDVCNLTHINLVKFVKEGCSGR 466 Query: 616 --------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D+ LA T R VR LD+ +DI+ ++ ++ R IGLG+MG L Sbjct: 467 TLEEKLECIDWAGLAETARVGVRFLDDAVDISTTGMKDVDETYRKIRKIGLGVMGLAEML 526 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI---- 723 L IPYAS +AV + + + +I +A+ S ELA+ERG + F S + +GV P+ Sbjct: 527 IKLEIPYASWDAVTLVNRVLAWIYLNALDESAELARERGPFKYFHQSDYARGVIPVLKYQ 586 Query: 724 ----------------------DSI-GLLAEVRDEL-AM-NRTSRLPWDELKKRVKTIGM 758 D + + E R L AM R + EL ++VK G+ Sbjct: 587 DFVWSRWERVRAAYPPEYRELGDRLKAITYETRRWLDAMAKRFGKPTLAELSEKVKG-GV 645 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS M++APT + + G + ++P + ++++ G V L+ R LW Sbjct: 646 RNSVVMSVAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLVEYYWPGVEYLRARGLWTP 705 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + ++ G + + +P+D+K + ATA EI W + + Q+W+DQ S + + Sbjct: 706 EVRRAVE-ESGMLRDAP-VPEDVKHLLATAMEIHWAWHVLMQASAQQWVDQGISKTINM- 762 Query: 879 EPSGKKLDFIYRQ---AWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923 P+ D +Y AW +G+K T Y +S+S + + + KL Sbjct: 763 -PANATKDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGIKQEIKKKL 811 >gi|218232459|ref|YP_002366134.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus B4264] gi|218160416|gb|ACK60408.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus B4264] Length = 682 Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKAIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESSEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670 >gi|308187850|ref|YP_003931981.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] gi|308058360|gb|ADO10532.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] Length = 712 Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 183/663 (27%), Positives = 303/663 (45%), Gaps = 77/663 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DF+ + +++ R F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 79 DFEFLLALHEVAENRGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVALTLAQG 138 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + +E +LS F +TPT N G + +L SCFL + D++ I A+ Sbjct: 139 DETLARALLE--EILSG-RFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSA 195 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 196 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 255 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 +L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 256 WLNAHHPDIFRFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKPMALFSP---YDV 312 Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +YG+ F I+ + E AD K + I ++ + + FE+G+P+I ++D Sbjct: 313 ERIYGQAFGDISISEKYDEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 370 Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615 N +P G ++ SNLC+EI +NS+SE + CNLGS+N +AH Sbjct: 371 NRSNPI--AGRINMSNLCSEILQVNSASEYNDDLSYRRVGKDISCNLGSLN-IAH----A 423 Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D LA T+ AVR L +V ++ ++ + N AIGLG M L I Y Sbjct: 424 MDSRDLARTVDVAVRALTSVSMMSEIGSVPSIAEGNRRSHAIGLGQMNLHGYLAREGIAY 483 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDS 725 SPEA++ + I+++A+ S +LAQE + + F S + GV+ + Sbjct: 484 GSPEALDFTNLYFYCITYYALRTSNQLAQEHQQTFDGFADSDYASGVYFDKYLQRAWLPR 543 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +A++ + + ++ W L+ V G+ N N AI PT +I+ I + SI P Sbjct: 544 TERVAQLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPI 603 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + K +G F+ NE N+ + Sbjct: 604 VSPIEIRKEGKTGRVYYPAPFMTNE-----------------------NLH--------L 632 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+ Sbjct: 633 YQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692 Query: 904 RSR 906 R R Sbjct: 693 RLR 695 >gi|145224884|ref|YP_001135562.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium gilvum PYR-GCK] gi|145217370|gb|ABP46774.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium gilvum PYR-GCK] Length = 701 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 181/663 (27%), Positives = 296/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F ++G Y Y L +G R +E + + V++ LA +T ++ V Sbjct: 77 DRAYAKKFRFPTFVGAFKYYTSYTLKTFDGKRYLERFEDRVVMVSLTLASGDTTLAEKLV 136 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 137 D---EIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 193 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 194 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L + Sbjct: 254 FRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 313 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I ++D N +P G + Sbjct: 314 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPID--GKI 369 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 370 THSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTIEV 424 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 ++R L V D + ++ ++ N++ AIGLG M L I Y S E V+ + Sbjct: 425 SIRALTAVSDQTHIWSVPSIEQGNNSSHAIGLGQMNLHGYLARERIFYGSDEGVDFTNIY 484 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HA+ AS +A ERG A+ F+ S + G F + E + E L + Sbjct: 485 FYCVLYHALRASNRIAIERGTAFGGFEKSKYKSGEFFDKYTDQVWEPKTEKVRGLFADAG 544 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 R+P W +LK V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 545 IRIPDQEDWKQLKASVQEHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEGKI 604 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G ++ NE N+E D A+EI + Sbjct: 605 GRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGYEKV 633 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 634 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 692 Query: 916 LKG 918 ++G Sbjct: 693 VEG 695 >gi|157955359|gb|ABW06063.1| NrdE [Bacillus thuringiensis serovar darmstadiensis] Length = 694 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|199598383|ref|ZP_03211802.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus HN001] gi|199590702|gb|EDY98789.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus HN001] Length = 723 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 161/609 (26%), Positives = 281/609 (46%), Gaps = 80/609 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E AV+ + + + +TP+ N+G R +L SCFL + DD+ I A+ L+ Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD + + + NA LFSP V Y Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVE---RAY 314 Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 GK F + Y++ +IK + KI A L ++ + E+G+P+I D N +P Sbjct: 315 GKPFSYVDITKEYDKMVANPDIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373 Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 + G + SNLC+EI LN+ E + CNLGS N+ + F + Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGH-- 429 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + + NH +IGLG MG + H+ Y SPE+ Sbjct: 430 ---SVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPES 486 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVR 733 ++ + ++++ + AS ++A+ERG ++ +F+ S + G + + +VR Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVR 546 Query: 734 DELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D ++ ++ W LK+ V G+ + N MA+AP +I+ I S S+ P Sbjct: 547 DLFKNIHIPTQADWQALKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +VN ++ R E I + Y + N D + +A++ID Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPGLSN------DTMPYYQSAYDID 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896 +I+ + Q+ +DQ ++ L++ D+ + + L+ + A G Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKG 696 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 697 IKSIYYIRT 705 >gi|111023402|ref|YP_706374.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus jostii RHA1] gi|110822932|gb|ABG98216.1| ribonucleoside-diphosphate reductase [Rhodococcus jostii RHA1] Length = 693 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 180/663 (27%), Positives = 294/663 (44%), Gaps = 72/663 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + VA+ LA + E+ A Sbjct: 69 DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---EELAT 125 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 126 KLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + VR GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLSNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADVN 305 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + + YE D+ K KI A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 306 VTEKYYEMVDDKRIRK--SKIKAREFFQTIAELQFESGYPYIMFEDTVNRANPIE--GKI 361 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 362 THSNLCSEILQVSTPSLFNDDLSYSEVGKDISCNLGSLNIA-----KTMDSPDFARTIEV 416 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 ++R L V D + +++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 417 SIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIYYGSDEGIDFTNIY 476 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + FHA+ AS +A ERG + F S + G + + E + E L Sbjct: 477 FYTVVFHAVRASNRIAIERGTHFKGFPQSKYASGEYFDKYTDQVWEPKTERVRQLFAESG 536 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796 +P W ELK V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 537 VHIPTQDDWRELKASVQKYGIYNQNLQAVPPTGSISYINYSTSSIHPVASKIEIRKEGKI 596 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G +L N+ N+E D A+EI + Sbjct: 597 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 625 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 +++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + Sbjct: 626 VDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 684 Query: 916 LKG 918 ++G Sbjct: 685 VEG 687 >gi|41409198|ref|NP_962034.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398018|gb|AAS05648.1| NrdE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 726 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 182/666 (27%), Positives = 298/666 (44%), Gaps = 78/666 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 102 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 161 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 162 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 218 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 219 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 278 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L + Sbjct: 279 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 338 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 339 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 394 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 395 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 449 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 450 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIY 509 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HA+ AS +A ERG + F+ S + G F + E E L + Sbjct: 510 FYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAG 569 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 570 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 616 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853 +V++++ R +G IG + + +D + + A+EI Sbjct: 617 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQDAYEIGY 655 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 656 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 714 Query: 913 KSTLKG 918 + ++G Sbjct: 715 GTEVEG 720 >gi|229552272|ref|ZP_04440997.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|258539682|ref|YP_003174181.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus Lc 705] gi|229314344|gb|EEN80317.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|257151358|emb|CAR90330.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus rhamnosus Lc 705] Length = 723 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 161/609 (26%), Positives = 281/609 (46%), Gaps = 80/609 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E AV+ + + + +TP+ N+G R +L SCFL + DD+ I A+ L+ Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD + + + NA LFSP V Y Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSV---ERAY 314 Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 GK F + Y++ +IK + KI A L ++ + E+G+P+I D N +P Sbjct: 315 GKPFSYVDITKEYDKMVANPDIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373 Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 + G + SNLC+EI LN+ E + CNLGS N+ + F + Sbjct: 374 IE--GRIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGH-- 429 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + + NH +IGLG MG + H+ Y SPE+ Sbjct: 430 ---SVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPES 486 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVR 733 ++ + ++++ + AS ++A+ERG ++ +F+ S + G + + +VR Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVR 546 Query: 734 DELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D ++ ++ W LK+ V G+ + N MA+AP +I+ I S S+ P Sbjct: 547 DLFKNIHIPTQADWQALKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +VN ++ R E I + Y + N D + +A++ID Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPGLSN------DTMPYYQSAYDID 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896 +I+ + Q+ +DQ ++ L++ D+ + + L+ + A G Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKG 696 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 697 IKSIYYIRT 705 >gi|157955339|gb|ABW06048.1| NrdE [Bacillus thuringiensis serovar thuringiensis] Length = 694 Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I + S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAHESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++I+ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|319406096|emb|CBI79726.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp. AR 15-3] Length = 716 Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 164/582 (28%), Positives = 263/582 (45%), Gaps = 67/582 (11%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + +L SCFL V D++ I ++ L+K GG+ T +R Sbjct: 159 FQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLRE 218 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GV+P +K+ D NQ G R+GA YL H+D+ +FLD ++ Sbjct: 219 AGAPIKKIENQASGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKREN 278 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527 D++ R ++ IPD+ + N LFS D+ + GK F +I+ E+Y Sbjct: 279 ADEKIRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRS 335 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 D +I+ +KISA ++ + + FE+G+P+I F+D N +P G + SNLCTE Sbjct: 336 FVDNSKIRK-KKISARVFFQTLAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTE 392 Query: 588 ITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I S + E CNLGS+N+ ++ F T+ AVR L V Sbjct: 393 ILQVSEASELDTDLTYRAVGNDISCNLGSMNIAKAMESDNF-----GRTVEIAVRALTAV 447 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D+ N + K N AIGLG M L I Y + EA++ + +++HA Sbjct: 448 SDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREKIYYGTLEAIDFTNIYFYTVTYHA 507 Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP---- 745 + AS +A+ER + F+ S + G F I + + EL +R +P Sbjct: 508 LRASNLIARERKKMFVGFEKSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPNQRD 567 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W ELK+ V G+ N A+ PT +I+ I + SI P + ++ Sbjct: 568 WQELKQLVAQYGLYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRK------------ 615 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 E I + Y + N + + A+EI P +I++ + + Sbjct: 616 ------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEKIIDTYAAATQ 657 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ SL L+ D + + ++ AW G+K+ YY+R R Sbjct: 658 HVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLR 699 >gi|258508469|ref|YP_003171220.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus GG] gi|257148396|emb|CAR87369.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus rhamnosus GG] gi|259649781|dbj|BAI41943.1| ribonucleotide reductase alpha subunit [Lactobacillus rhamnosus GG] Length = 723 Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 162/609 (26%), Positives = 281/609 (46%), Gaps = 80/609 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E AV+ + + + +TP+ N+G R +L SCFL + DD+ I A+ L+ Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD + + + NA LFSP V Y Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVE---RAY 314 Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 GK F + Y++ +IK + KI A L ++ + E+G+P+I D N +P Sbjct: 315 GKPFSYVDITKEYDKMVANPDIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373 Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 + G + SNLC+EI LN+ E + CNLGS N+ + F + Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGH-- 429 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + + NH +IGLG MG + H+ Y SPE+ Sbjct: 430 ---SVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPES 486 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVR 733 ++ + ++++ + AS ++A+ERG ++ +F+ S + G + + +VR Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVR 546 Query: 734 DELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D ++ ++ W LK+ V G+ + N MA+AP +I+ I S S+ P Sbjct: 547 DLFKNIHIPTQADWQALKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +VN ++ R E I + Y + N D + +A++ID Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPGLSN------DTMPYYQSAYDID 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMG 896 +I+ + Q+ +DQ ++ L++ P+G + L+ + A G Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTNKMTTRDLNILRNYAHYKG 696 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 697 IKSIYYIRT 705 >gi|108798785|ref|YP_638982.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium sp. MCS] gi|119867903|ref|YP_937855.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium sp. KMS] gi|126434386|ref|YP_001070077.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium sp. JLS] gi|108769204|gb|ABG07926.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. MCS] gi|119693992|gb|ABL91065.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. KMS] gi|126234186|gb|ABN97586.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. JLS] Length = 693 Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 186/665 (27%), Positives = 296/665 (44%), Gaps = 76/665 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTTLAEKLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I ++D N +P + G Sbjct: 303 DISVTEKYYEMVDDSRIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRSNPIE--G 359 Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ E CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 415 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGVDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F+ S + G F E + E L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQPWEPKTERVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 535 AGIRIPNQDDWRRLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEG 594 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G +L N+ N+E D A+EI Sbjct: 595 KIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 624 KIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEG 682 Query: 914 STLKG 918 + ++G Sbjct: 683 TEVEG 687 >gi|10957414|ref|NP_051640.1| ribonucleoside-diphosphate reductase, alpha chain [Deinococcus radiodurans R1] gi|6460843|gb|AAF12547.1|AE001826_16 ribonucleoside-diphosphate reductase, alpha chain [Deinococcus radiodurans R1] Length = 702 Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 169/608 (27%), Positives = 281/608 (46%), Gaps = 73/608 (12%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386 AL +E+ A+E + L + F +TPTL NSG + +L SCFL D+L I Sbjct: 126 ALARSERVDEALELVHHLVNQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLDSITKT 185 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L A L+K GG+G + + +R G + G ++GV+ K+ ++ +Q G+R G Sbjct: 186 LSFVAELSKGGGGIGVEASNLRARGESLRGIQNVTKGVLGVAKMLDNMLRYADQAGQRPG 245 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YL H D + L+ +K D+ R ++ IPD+FM++V F P Sbjct: 246 AGAVYLSVMHADFSDLLNAKKIATDEDARLKTLSIGATIPDIFMEKVRCGEDIYQFYP-- 303 Query: 507 VSDLHDLY---GKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 H + G+EF I + + Y+ AD I+ +++SA L + E+G+P++ Sbjct: 304 ----HSFFQETGREFTSIDWTKEYQALADNPNIRK-KRVSARRLLEDIAVTQGESGYPYL 358 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------TAVCNLGSINL 607 F+ N +P +VG + SNLC+EI ++ CNL S+ + Sbjct: 359 LFEGNANRANPIPNVGTIKMSNLCSEILQPTTPSYFHPYGQEHRDRIGLDVSCNLASLVI 418 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 L + A+R+LDNV + H + K++N R+IGLG MG S Sbjct: 419 -----EQTMHGGDLGRVVGAAIRMLDNVARSTSVHEVPAVKRANDEMRSIGLGAMGLHSF 473 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS 725 L + Y SPEA+E D + +HA AS+E+A++ G +S F+GS + G Sbjct: 474 LAGKELIYGSPEALEFVDVFFAAVHYHARKASMEIARDTGFVFSGFEGSRYQSGEHFAQY 533 Query: 726 IGL-LAEVRDELAM-----NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + A R E+A +R W++L + +KT G+ +S MAIAPT +I+ + S Sbjct: 534 LERDFAPRRPEVAALFEGHTLPTRADWEQLVEDIKTHGLAHSFVMAIAPTGSISYVSHAS 593 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + +++ K R ++ +S + Sbjct: 594 ASIMPITEKVETRTSN---------------KARTIYPMPHLS----------------E 622 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898 D + + A+++D ++++ + QK +DQ S L+L + + L Y A+ +G+K Sbjct: 623 DTEWYYEEAYDMDQRRVLDTVAAAQKHVDQGISCTLFLPASATTRTLQSYYLYAYRLGIK 682 Query: 899 TTYYLRSR 906 T YY R R Sbjct: 683 TLYYTRLR 690 >gi|157955391|gb|ABW06087.1| NrdE [Bacillus thuringiensis serovar thompsoni] Length = 694 Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFKKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|109287943|ref|YP_654637.1| hypothetical protein MIV065R [Invertebrate iridescent virus 3] gi|123862746|sp|Q196Z5|RIR1_IIV3 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|106073566|gb|ABF82095.1| hypothetical protein MIV065R [Aedes taeniorhynchus iridescent virus] Length = 630 Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 192/669 (28%), Positives = 298/669 (44%), Gaps = 111/669 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 R+ F+ LGLQ L D Y S PQ F +A + E A Y+ +S Sbjct: 8 RNNLFDALGLQRLKDSYMKEDESS----PQERFAFIARQFC---ADDEPLAQRLYDYMSQ 60 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 S+P L T+ +CFL + D G+ E + L+ G Sbjct: 61 HWLSPSSPQLSFGRTKQGLPIACFLPYLHDTARGLIDTWAEVSELSMIGG--------GI 112 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GLG I + KS G+IP L+ + + A QG R+G+ AYL+ H ++ FL+ R+ Sbjct: 113 GLGVGIRQPDEKSVGIIPHLRTYDASCTAYKQGQTRRGSYAAYLDISHPEILSFLNTRRV 172 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL--FSP----DEVSDLHDLYGKEF---- 518 GD + +++ +PD FMK++ W L +P D L+ K Sbjct: 173 GGDHNYKLLNLHNGVNVPDSFMKKI-----WILSTLAPFVKMDPCPTTETLFKKAVTTLK 227 Query: 519 -------------EIAYENYERQAD---RGEI------KVFRKISAVALWRKMLTMLFET 556 E+++ Q D R ++ KV I A LW +++ ET Sbjct: 228 DSRYFGADDRWLGEVSFAALAEQLDVVNRWDLIDPHTGKVKETIKATELWERIILTRAET 287 Query: 557 GHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHF 611 G P+I + D N PQ +++G+ + SNLC+E+ L + TAVC L S+NL + Sbjct: 288 GEPYIHWIDTSNRALPQFQKNLGLSIRQSNLCSEVVLPTDETRTAVCCLASLNLDYFDKW 347 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 NN+ Y +A+ + VL ID T+++A S + RAIG+G +GF S L Sbjct: 348 CNNEQFYLDVATYLDN---VLQYFIDHAPPTLKRAVHSARSERAIGIGALGFHSYLQSKM 404 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + S A I + + IS H ++EL + RG D +G Sbjct: 405 VDIESLPAYLINKKIFKTISSHLERVNLELGELRGEAP--------------DCVG---- 446 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790 G R S+ AIAP AT + I G S S +P N+Y Sbjct: 447 ------------------------TGRRFSHMTAIAPNATSSIIMGNTSPSCEPFRANIY 482 Query: 791 VKSNMSGDFTVVNSFLVNELKQR---DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + +SG F N L L++R + E + S +K HDGS+ ++ ++ KK+ T Sbjct: 483 KQDTISGSFVTYNKHLKRLLEERIPDNQARERVWSSIKMHDGSVQHLNQLTVQEKKVFKT 542 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLR 904 EI+ + L+ A+ RQKWIDQ+QS +L+ + +++ ++++ +AWL GLKT YY R Sbjct: 543 WPEINQLSLVMLAADRQKWIDQSQSTSLFFN--PDERISYVHKIHLKAWLHGLKTLYYFR 600 Query: 905 SRSATSVEK 913 SR +V+K Sbjct: 601 SRKILTVDK 609 >gi|227329867|ref|ZP_03833891.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 693 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 189/690 (27%), Positives = 314/690 (45%), Gaps = 74/690 (10%) Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313 RY +EEG +A +L + FD + Y F F+ +LG Y Y L +G R Sbjct: 43 RYLVEEGYYEADVLDQ--YHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 100 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371 +E + VA+ L+ +T A + + S F +TPT N G + +L SC Sbjct: 101 YLERYEDRVCLVALTLSKGDT---ALASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 157 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 158 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 217 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 218 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 277 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N LFSP +V ++ + E + E Y + I+ +I A ++ + Sbjct: 278 LAKNNQVMYLFSPYDVEQVYGVPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 335 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599 + FE+G+P++ F+D N +P G ++ SNLC+EI +N +S + Sbjct: 336 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKDIS 393 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ A+ F T+ A+R L V D+ + ++ +K N AIGL Sbjct: 394 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAIGL 448 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717 G M L I Y + EAV+ + ++FHAI AS LA ER +S F+ S + Sbjct: 449 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 508 Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G + I E+ ++ ++ ++ W L++ V G+ N N A+ PT Sbjct: 509 TGEYFDKYIEQRWEPTTARARELFEQSGIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 568 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P +V+ ++ R E I + Y Sbjct: 569 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 604 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + N D+L+ + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 605 YMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 658 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 659 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 687 >gi|326335595|ref|ZP_08201782.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692361|gb|EGD34313.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 551 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 162/570 (28%), Positives = 250/570 (43%), Gaps = 112/570 (19%) Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 S+P N GT SCF +PD + GI L E M K GG + +R G+ Sbjct: 65 SSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRHRGSA 124 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + NGKS G + F+K+ + V+QGG R+GA AYL+ H D+EEFL + K+TG Sbjct: 125 VT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDIEEFLQI-KDTG--- 179 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 ++ +PD +++ + Sbjct: 180 YHIQNLFFGVCVPDYWIQEMIDG------------------------------------- 202 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590 + LW ++L + G P+I F D N + PQ + +HSSNLC+EI L Sbjct: 203 -----DVDKRKLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNNMFIHSSNLCSEIML 257 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 SS+EE+ +C L S+NL FD K ++ A+ LD V+ IEK K + Sbjct: 258 PSSAEESFICCLSSMNL------ELFDEWKDTKAVKLAIFFLDAVLS---EFIEKTKDNY 308 Query: 651 HT---------HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + HRA+GLG++G+ S L IP+ S EA + + I A A+ EL Sbjct: 309 YLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFMHIQNEAEKATQEL 368 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A G KG G RN+ Sbjct: 369 AHIYGEPELLKG------------------------------------------YGRRNA 386 Query: 762 NCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 MA+APT + + I G VS I+P N Y G+F N +L L+++ + +E + Sbjct: 387 TTMAVAPTTSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNRYLTQLLEEKGINNEDV 446 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 ++ DGS+ ++ + K + T EI PM ++ A++RQ++IDQ+QSLNL + Sbjct: 447 WRSIRLSDGSVQHLSELTTHEKNVFKTFKEISPMEIVTQAAQRQQYIDQSQSLNLNIPPT 506 Query: 881 SG-KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + ++ + +AW +G+K+ YY RS+S Sbjct: 507 MPVRDVNKVILEAWKLGVKSLYYQRSQSVA 536 >gi|157955400|gb|ABW06094.1| NrdE [Bacillus thuringiensis serovar toumanoffi] Length = 694 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 170/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+ GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + ++GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|298529116|ref|ZP_07016519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfonatronospira thiodismutans ASO3-1] gi|298510552|gb|EFI34455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfonatronospira thiodismutans ASO3-1] Length = 745 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 167/619 (26%), Positives = 286/619 (46%), Gaps = 85/619 (13%) Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHF 351 +L RY + G +E + F RVA +A +E + ++ + FY LL F Sbjct: 22 VLSKRYLRKGDDGQPLEDFKTMFWRVAASVAGEEDKYQESSYNSLDLGRSFYQLLVEGKF 81 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+GT QL++CF+ V D + IF +++ A++ K GG G ++ +R Sbjct: 82 LPNSPTLMNAGTDLGQLAACFVLPVGDSMDEIFDSIKNAALIHKSGGGTGFSFSRLRPKD 141 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + T G + G + FLK+ N V QGG R+GA L H D+ +F+ ++ G+ Sbjct: 142 SRVGSTGGIASGPLSFLKIFNTATEQVKQGGTRRGANMGILRVDHPDIMDFIRAKERDGE 201 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 ++ N + + + FM+ V + ++L +P + L +E Sbjct: 202 ----LNNFNLSVALTEKFMQSVESGSDYSLTAPQNNQETERLNARE-------------- 243 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 ++ ++ +E+G P I F D N +P +G + S+N C E L Sbjct: 244 -------------VFSLLVHKAWESGDPGIIFLDRINKDNPTPGLGEMESTNPCGEQPLL 290 Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 CNLGSINL + A D++ L + +VR LDNVID++ + +E+ + Sbjct: 291 PYE----ACNLGSINLDRFYSPTAEGGIDWEGLREAVHLSVRFLDNVIDLSRYPLERITE 346 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 H R IGLG+MGF L L + Y S +++ ++ MEF+ + SAS LAQERG + Sbjct: 347 MVHKTRKIGLGVMGFADLLFQLRVAYDSHRGLQLGEKIMEFVQRESRSASRILAQERGPF 406 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 ++ S++ R L P+ RN+ IAP Sbjct: 407 PEYEHSIY---------------ARQNLG-------PY------------RNATTTTIAP 432 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827 T T++ I G S I+P + + + + G+ + VN L LK + + ++ D+ Sbjct: 433 TGTLSIIAGCSSGIEPIFALSFTRQVLDGERLLEVNPHLEEALKNTRSYSDKLMEDVA-K 491 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKL 885 GSI +E + DL+ + TA ++ + ++ + QK+ D A +++NL D + + + Sbjct: 492 KGSIKQMEHLDQDLRDVFVTAMDVPAQYHLKMQAAFQKYTDNAVSKTVNLPFDA-TQEDV 550 Query: 886 DFIYRQAWLMGLKTTYYLR 904 IY A+ MG K R Sbjct: 551 WQIYWMAYEMGCKGVTVYR 569 >gi|328958550|ref|YP_004375936.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] gi|328674874|gb|AEB30920.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] Length = 732 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 180/672 (26%), Positives = 302/672 (44%), Gaps = 84/672 (12%) Query: 276 FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 +D ++ K Y +F F+ ++G Y +Y L N + Q F R+A Sbjct: 85 YDFAFIKKIFKQIYAANFKFKSFMGAYKFYSQYALKTNDHSKYLEQ-FEDRIAFNALYLG 143 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 A++ L S + +TPT N+G + ++ SCFL + D + I + Sbjct: 144 NGDRTLAIQLAEELISQRYQPATPTFLNAGKKKRGEMISCFLIDIADSMLSIGRGVNSAL 203 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L++ GG+G + + +R G I S GV+P +K+ D NQ G+R GA Y Sbjct: 204 QLSRIGGGVGVNLSNIRSAGDPIKDIANASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVY 263 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L +H D+ FL +K D++ R ++ +PD + + + N LFSP V + Sbjct: 264 LNVFHPDILGFLSTKKENADEKIRVKTLSLGLVVPDKYYELIKTNKPMYLFSPYSVEKEY 323 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + +++ E Y+ + IK +I+A L +++ + E+G+P+I D N + Sbjct: 324 GIPFSYIDLSAE-YDNMVENLNIKK-TQINARELEQEISRLQQESGYPYILNIDTANNTN 381 Query: 572 PQQHVGVVHSSNLCTEI-------TLNS--SSEETAV---CNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI TLN+ S E+T CNLGS N++ N Sbjct: 382 PVD--GKIIMSNLCSEILQPQEPSTLNADLSYEQTGTDISCNLGSSNIM-----NMLQSP 434 Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 A ++ AVR L V D N + K N + IGLG MG +AL L I Y S E Sbjct: 435 NFAKSVNLAVRALTTVTDSSNVLEVPTISKGNSMYHTIGLGAMGLHTALALHQIEYGSKE 494 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PI--DSIGLLAEVR 733 ++E + +++H++ AS E+AQERG + F+ S + G + P L+ E Sbjct: 495 SIEFTEAYFLALNYHSLIASNEIAQERGETFFGFEKSKYADGSYFNPYLESEFTLVNEKV 554 Query: 734 DELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + +N +LP W +LK++V G+ + N +A+AP +I+ + S S+ P Q + Sbjct: 555 KNIFVN--IQLPTVADWKDLKEKVFQHGLYHRNRLAVAPNGSISYVNETSASLHPITQLI 612 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 E +Q E + + Y + N E +P + +A+ Sbjct: 613 -------------------ENRQ-----EKKVGSIFYPAPFLSN-ETLP-----YYKSAY 642 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAW 893 + D +I+ + QK IDQ SL L++ + + + L+ + AW Sbjct: 643 DYDQRKIIDIYAAAQKHIDQGMSLTLFMRSTLPENIYEWKTGVSSKLTTRDLNRLRNYAW 702 Query: 894 LMGLKTTYYLRS 905 G+K+ YY+R+ Sbjct: 703 TKGIKSLYYIRT 714 >gi|254820781|ref|ZP_05225782.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium intracellulare ATCC 13950] Length = 693 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 181/665 (27%), Positives = 295/665 (44%), Gaps = 76/665 (11%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T ++ V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDTILAEKLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ L + Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 305 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 306 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 361 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 362 THSNLCSEILQVSTPSVFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 416 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 417 AIRALTAVSDQTHITSVPSIEQGNNESHAIGLGQMNLHGYLARERIHYGSEEGVDFTNIY 476 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIGLLAEVRDE 735 + +HA+ AS +A ERG+ + F+ S + G F P + + E+ E Sbjct: 477 FYTVLYHALRASNRIAIERGSKFGGFERSKYASGEFFDKYTEQVWEP--ATPRVREIFAE 534 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794 + ++ W LK+ V+ G+ N N A+ PT +I+ I + SI P + + K Sbjct: 535 AGIRIPTQDDWRRLKESVQEHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEG 594 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G +L N+ N+E D A+EI Sbjct: 595 KIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 624 KIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-LALEG 682 Query: 914 STLKG 918 + ++G Sbjct: 683 TEVEG 687 >gi|315654324|ref|ZP_07907232.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 51333] gi|315491359|gb|EFU80976.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 51333] Length = 733 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 187/693 (26%), Positives = 300/693 (43%), Gaps = 85/693 (12%) Query: 260 IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEM 316 +EEG +A L + +F+ + + Y F F +LG Y Y L +G R Sbjct: 86 VEEGYYEAETLEQ--YNFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKR--Y 141 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT 375 + F RV M E+ AV+ + + + +TPT N+G + ++ SCFL Sbjct: 142 LERFEDRVCMVALYLARGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVR 201 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I + L+K GG+ T +R GA I +S GV+P +K+ D+ Sbjct: 202 LEDNMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSF 261 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA Y+ +H D+ FLD ++ D++ R ++ +PD+ + Sbjct: 262 SYANQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARN 321 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 LFSP D+ +YG F E Y D I+ +KI A ++ + + Sbjct: 322 KEPMYLFSP---YDVERVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQ 377 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CN 601 FE+G+P+I F+D N +P G + SNLC+EI LN V CN Sbjct: 378 FESGYPYIVFEDTVNRANPID--GRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCN 435 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + F A +I A+R L V D+ N + ++ N AIGLG Sbjct: 436 LGSMNIAKTLESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGA 490 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L I Y S E ++ + +F+A+ AS LA ERG + F+ S + G Sbjct: 491 MNLHGCLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASG 550 Query: 720 VF-----PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770 + D A+VR EL + LP W L +K G+ N N AI PT Sbjct: 551 EYFEKYLQGDWTPRTAKVR-ELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTG 609 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ I + SI P + ++ +G Sbjct: 610 SISYINNSTSSIHPIASKIEIRK----------------------------------EGK 635 Query: 831 IGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 IG + + +D + A+EI +I++ + K +DQ SL L+ D + + + Sbjct: 636 IGRVYYPAPYLTNDNLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDV 695 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + AW G+K+ YY+R R A ++E + ++G Sbjct: 696 NKAQIYAWRKGIKSLYYIRLRQA-ALEGTEVQG 727 >gi|283477830|emb|CAY73746.1| nrdA [Erwinia pyrifoliae DSM 12163] Length = 693 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 157/528 (29%), Positives = 236/528 (44%), Gaps = 35/528 (6%) Query: 289 RDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGL--ALKETEKEKRAVEFYN 344 RD F Y ++ L +Y + ++G E Q ++ VA L + FY+ Sbjct: 71 RDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFLYILVAACLFSGYPRATRLDYVKRFYD 130 Query: 345 LLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 +S+F TP + SG R P Q SSC L D L I G+G Sbjct: 131 AISTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGI 188 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R LG+ I G G IPF K + +QGG R GA + WH +VE Sbjct: 189 NAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHREVESL 248 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFE 519 L L+ N G + R M+ + + +R+ + TLFSP +V L+D + EFE Sbjct: 249 LVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGEDITLFSPSDVPGLYDAFFADQNEFE 308 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGV 578 Y YE+ I+ R + AV L+ M+ TG +I D CN SP + Sbjct: 309 RLYTQYEKD---DSIRKLR-VKAVDLFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAP 364 Query: 579 VHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 V SNLC EI L N + E A+C L + NL A + D L AVR Sbjct: 365 VRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFNLGAIES-----LDDLQELATLAVR 419 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD ++D + I AK+ R +G+G++ F L + Y+ A + ++ E I Sbjct: 420 ALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGVRYSDGSANILTHQTFEAI 479 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM-NRTSRLPWDEL 749 + + AS ELA E+GA F + + QG+ PID+ +D A+ N L W+ L Sbjct: 480 QYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYK-----KDLDAICNTPLLLDWEGL 534 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ VK G+RNS A+ P+ T + I + I+P ++ +K++ G Sbjct: 535 RESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIKASKDG 582 >gi|301750611|gb|ADK88939.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4] Length = 812 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 177/652 (27%), Positives = 289/652 (44%), Gaps = 63/652 (9%) Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----------F 342 GLQ + Y+ ++L + R E + R+A LA + + A+ F Sbjct: 169 GLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWMEMFQYF 228 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKYS 397 + L S + STP + N GT + +SC+L +TV L I G + + + ++ Sbjct: 229 FEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNV---STILSHN 285 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ IP LK + A N+ +R VC Y+E WH Sbjct: 286 GGIGL-------CMQDLNDAQANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEPWHS 338 Query: 458 DVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510 D+ L R G++ +R ++ +A W+PDLF KR+ ++ WTLF + DL Sbjct: 339 DIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETGGDL 398 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 L+G FE YE+ E+Q GE + I A A+ R G P+I FKD N Sbjct: 399 SRLHGDAFEKRYESLEKQG-LGERVPIQDI-AYAIVRSAAI----AGSPFIMFKDAVNRH 452 Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 G + SNLCTEI + + VCNLGS+NL + F + L S +R V Sbjct: 453 YIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVRACV 512 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +++ +ID + ++ + R++G+G+ G +A +L + S + + E Sbjct: 513 LMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLIAEV 572 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + A+ S L + F S++ +GVF + + R W+ Sbjct: 573 MLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVFHWER---FPDARPAFPGE------WEL 623 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++ +K G+RNS +A+ PT T + + VS+S P + N++ K G+ N L+ Sbjct: 624 LRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNILLMR 683 Query: 809 ELKQ--RDLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQ 864 EL++ A++ L + S+ PD TAF+ LI+ + R Sbjct: 684 ELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCADRA 743 Query: 865 KWIDQAQSLNLYLDEPSGKKL--DFIYR---QAWLMGLKT-TYYLRSRSATS 910 ++D +QS+ LY+ E + L I R A+ GLKT YY + R AT+ Sbjct: 744 PYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795 >gi|227112967|ref|ZP_03826623.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 693 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 189/690 (27%), Positives = 313/690 (45%), Gaps = 74/690 (10%) Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313 RY +EEG +A +L + FD + Y F F+ +LG Y Y L +G R Sbjct: 43 RYLVEEGYYEADVLDQ--YSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 100 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371 +E + VA+ LA +T A + + S F +TPT N G + +L SC Sbjct: 101 YLERYEDRVCLVALTLAKGDT---ALASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 157 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 158 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 217 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 218 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 277 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N LFSP +V ++ + E + E Y + I+ +I A ++ + Sbjct: 278 LAKNNQVMYLFSPYDVEQVYGVPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 335 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599 + FE+G+P++ F+D N +P G ++ SNLC+EI +N +S + Sbjct: 336 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKDIS 393 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ + F T+ A+R L V D+ + ++ +K N AIGL Sbjct: 394 CNLGSMNIANAMTSPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAIGL 448 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717 G M L I Y + EAV+ + ++FHAI AS LA ER +S F+ S + Sbjct: 449 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 508 Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G + I E+ ++ ++ ++ W L++ V G+ N N A+ PT Sbjct: 509 TGEYFDKYIEQTWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 568 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P +V+ ++ R E I + Y Sbjct: 569 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 604 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 + N D+L+ + A+EI P +I++ + + +DQ SL L+ D + + ++ Sbjct: 605 YMSN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 658 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 659 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 687 >gi|157955387|gb|ABW06084.1| NrdE [Bacillus thuringiensis serovar subtoxicus] Length = 694 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 170/649 (26%), Positives = 304/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+ GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|315657773|ref|ZP_07910653.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491570|gb|EFU81181.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 733 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 189/690 (27%), Positives = 300/690 (43%), Gaps = 79/690 (11%) Query: 260 IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEM 316 +EEG +A L + +F+ + + Y F F +LG Y Y L +G R Sbjct: 86 VEEGYYEAETLEQ--YNFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKR--Y 141 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT 375 + F RV M E+ AV+ + + + +TPT N+G + ++ SCFL Sbjct: 142 LERFEDRVCMVALYLARGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVR 201 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I + L+K GG+ T +R GA I +S GV+P +K+ D+ Sbjct: 202 LEDNMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSF 261 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA Y+ +H D+ FLD ++ D++ R ++ +PD+ + Sbjct: 262 SYANQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARN 321 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 LFSP D+ +YG F E Y D I+ +KI A ++ + + Sbjct: 322 KEPMYLFSP---YDVERVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQ 377 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CN 601 FE+G+P+I F+D N +P G + SNLC+EI LN V CN Sbjct: 378 FESGYPYIVFEDTVNRANPID--GRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCN 435 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + F A +I A+R L V D+ N + ++ N AIGLG Sbjct: 436 LGSMNIAKTLESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGA 490 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L I Y S E ++ + +F+A+ AS LA ERG + F+ S + G Sbjct: 491 MNLHGCLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAIERGVTFEGFERSQYASG 550 Query: 720 VF-----PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770 + D A+VR EL + LP W L +K G+ N N AI PT Sbjct: 551 EYFEKYLQGDWTPRTAKVR-ELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTG 609 Query: 771 TIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + + K G ++ N Sbjct: 610 SISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTN--------------------- 648 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 GN++ D A+EI +I++ + K +DQ SL L+ D + + ++ Sbjct: 649 --GNLDYYQD--------AYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKA 698 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+K+ YY+R R A ++E + ++G Sbjct: 699 QIYAWRKGIKSLYYIRLRQA-ALEGTEVQG 727 >gi|294993445|ref|ZP_06799136.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis 210] Length = 693 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 185/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + + L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDRIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 679 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 680 LEGTEVEG 687 >gi|159146680|gb|ABW90784.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4] Length = 812 Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 177/652 (27%), Positives = 289/652 (44%), Gaps = 63/652 (9%) Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----------F 342 GLQ + Y+ ++L + R E + R+A LA + + A+ F Sbjct: 169 GLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWMEMFQYF 228 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKYS 397 + L S + STP + N GT + +SC+L +TV L I G + + + ++ Sbjct: 229 FEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNV---STILSHN 285 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ IP LK + A N+ +R VC Y+E WH Sbjct: 286 GGIGL-------CMQDLNDAQANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEPWHS 338 Query: 458 DVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510 D+ L R G++ +R ++ +A W+PDLF KR+ ++ WTLF + DL Sbjct: 339 DIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETGGDL 398 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 L+G FE YE+ E+Q GE + I A A+ R G P+I FKD N Sbjct: 399 SRLHGDAFEKRYESLEKQG-LGERVPIQDI-AYAIVRSAAI----AGSPFIMFKDAVNRH 452 Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 G + SNLCTEI + + VCNLGS+NL + F + L S +R V Sbjct: 453 YIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVRACV 512 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +++ +ID + ++ + R++G+G+ G +A +L + S + + E Sbjct: 513 LMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLIAEV 572 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + A+ S L + F S++ +GVF + + R W+ Sbjct: 573 MLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVFHWER---FPDARPAFPGE------WEL 623 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++ +K G+RNS +A+ PT T + + VS+S P + N++ K G+ N L+ Sbjct: 624 LRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNILLMR 683 Query: 809 ELKQ--RDLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQ 864 EL++ A++ L + S+ PD TAF+ LI+ + R Sbjct: 684 ELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCADRA 743 Query: 865 KWIDQAQSLNLYLDEPSGKKL--DFIYR---QAWLMGLKT-TYYLRSRSATS 910 ++D +QS+ LY+ E + L I R A+ GLKT YY + R AT+ Sbjct: 744 PYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795 >gi|15610188|ref|NP_217567.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Rv] gi|31794229|ref|NP_856722.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium bovis AF2122/97] gi|121638935|ref|YP_979159.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662904|ref|YP_001284427.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|167969653|ref|ZP_02551930.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|215412906|ref|ZP_03421610.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|218754816|ref|ZP_03533612.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis GM 1503] gi|224991427|ref|YP_002646116.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|254552126|ref|ZP_05142573.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188083|ref|ZP_05765557.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis CPHL_A] gi|289448729|ref|ZP_06438473.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis CPHL_A] gi|289763229|ref|ZP_06522607.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis GM 1503] gi|297635682|ref|ZP_06953462.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis KZN 4207] gi|297732680|ref|ZP_06961798.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis KZN R506] gi|298526521|ref|ZP_07013930.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis 94_M4241A] gi|306777357|ref|ZP_07415694.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu001] gi|306781261|ref|ZP_07419598.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu002] gi|306785902|ref|ZP_07424224.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu003] gi|306790256|ref|ZP_07428578.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu004] gi|306794751|ref|ZP_07433053.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu005] gi|306804836|ref|ZP_07441504.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu008] gi|306809029|ref|ZP_07445697.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu007] gi|306969129|ref|ZP_07481790.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu009] gi|307081184|ref|ZP_07490354.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu011] gi|313660012|ref|ZP_07816892.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis KZN V2475] gi|3261509|emb|CAA16136.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|31619824|emb|CAD96764.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN) [Mycobacterium bovis AF2122/97] gi|121494583|emb|CAL73064.1| Probable ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507056|gb|ABQ74865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|224774542|dbj|BAH27348.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|289421687|gb|EFD18888.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis CPHL_A] gi|289710735|gb|EFD74751.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis GM 1503] gi|298496315|gb|EFI31609.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis 94_M4241A] gi|308214249|gb|EFO73648.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu001] gi|308325904|gb|EFP14755.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu002] gi|308329426|gb|EFP18277.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu003] gi|308333271|gb|EFP22122.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu004] gi|308336926|gb|EFP25777.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu005] gi|308344609|gb|EFP33460.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu007] gi|308348557|gb|EFP37408.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu008] gi|308353283|gb|EFP42134.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu009] gi|308361068|gb|EFP49919.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu011] Length = 693 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 185/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + + L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 679 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 680 LEGTEVEG 687 >gi|85726185|gb|ABC79615.1| ribonucleotide reductase alpha subunit [Borrelia hermsii DAH] Length = 690 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 170/660 (25%), Positives = 308/660 (46%), Gaps = 79/660 (11%) Query: 290 DFAFE-YLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +F F+ Y+ Y Y L +NG + +E + + V++ LA E A++ + + Sbjct: 80 NFKFKSYMSASKFYKDYALKLNGDTYLESYEDRIIAVSLFLADGCFE---LALKLASEMI 136 Query: 348 SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TPT N+G R +L SCFL V D L I + L+K GG+ + + Sbjct: 137 KQRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSN 196 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G ++G+IP +K+ D +Q G+RKGA YL +H D+E+FLD + Sbjct: 197 IRARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTK 256 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + Q + F+P + + E + E Y+ Sbjct: 257 KINADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAPYSLYKATGRFMNEIDFDLE-YD 315 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A I + ++I A + ++ + FE+G+P+I ++ CN+ +P + +G + SNLCT Sbjct: 316 LLASNPNI-LKKEIKARDMLVRIARLQFESGYPYIMYQTACNLNNPLKGIGKIKMSNLCT 374 Query: 587 EI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + E + C LGS+N++ + N+ F++ T+ A++ L + Sbjct: 375 EIFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIV-NVVNSNFEH-----TVDIAMQALTS 428 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + K+N+ + A+GLG+M L IPY S EA++ ++F+ Sbjct: 429 VCDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIKNKIPYESAEAIDFVRTFFMLLNFY 488 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSI--GLLAEVRDELAMNR 740 +I +S+ +A+ RG + FK S + G + P + G+ + ++ L Sbjct: 489 SIKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTEDFSPKTEVVKGIFSGIKIPL---- 544 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK+ V+ G+ ++ +A+APT +I+ I + S+ P Sbjct: 545 --KSDWESLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSLMP---------------- 586 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +V ++ R + + Y + + +A+ +D LI+ Sbjct: 587 -----IVEPVEARVYGNSTTYYPMPY----------LSKENALFFKSAYYMDMRKLIDLI 631 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 S Q+ +DQ S LY+ +E S ++L +Y A GLK+ YY R+++ SV++ L + Sbjct: 632 SEAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 690 >gi|296393702|ref|YP_003658586.1| ribonucleoside-diphosphate reductase subunit alpha [Segniliparus rotundus DSM 44985] gi|296180849|gb|ADG97755.1| ribonucleoside-diphosphate reductase, alpha subunit [Segniliparus rotundus DSM 44985] Length = 732 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 183/662 (27%), Positives = 295/662 (44%), Gaps = 70/662 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R + F RV M LAL + ++E A Sbjct: 108 DQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVVMVALALADGDEE-LAC 164 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT N G + + SCFL + D++ I ++ L+K GG Sbjct: 165 QLVEEIIEGRFQPATPTFLNCGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 224 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 225 VALLLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 284 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ + E Sbjct: 285 MRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERVYGVPFAEVS 344 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ +KI+A ++ + + FE+G+P+I ++D N +P G + Sbjct: 345 VT-EKYFEMVDDERIRK-KKINAREFFQTIAELQFESGYPYIMYEDTVNRANPID--GRI 400 Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI T N+ + V CNLGS+N+ D T+ T Sbjct: 401 THSNLCSEILQVSTASTFNADLSYSHVGKDISCNLGSLNIA-----KTMDSPDFGKTVET 455 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 ++R L +V D ++ N AIGLG M L I Y S E V+ + Sbjct: 456 SIRALTSVSDQTRIDSVPSIAHGNDESHAIGLGQMNLHGYLARERIHYGSEEGVDFTNIY 515 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741 + +HA+ AS ++A ERG A++ F+ S + G F + E + E L Sbjct: 516 FYTVLYHALWASNKIAVERGRAFAGFERSKYASGEFFDKYLNQTWEPKTERVRELFKRAK 575 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++P W+ LK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 576 VQIPTKADWERLKDSVVAHGIYNQNLQAVPPTGSISYINHSTSSIHPVAAKIEIRK---- 631 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 E I + Y + N D+L + A+EI +I Sbjct: 632 --------------------EGKIGRVYYPAPYLAN-----DNLD-YYQDAYEIGYEKII 665 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 ++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + + Sbjct: 666 DTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-LALEGTEV 724 Query: 917 KG 918 +G Sbjct: 725 EG 726 >gi|15842617|ref|NP_337654.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis CDC1551] gi|148824242|ref|YP_001288996.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis F11] gi|253797851|ref|YP_003030852.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 1435] gi|289553158|ref|ZP_06442368.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 605] gi|308374764|ref|ZP_07437295.2| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu006] gi|308379399|ref|ZP_07486134.2| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu010] gi|308406043|ref|ZP_07494896.2| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu012] gi|61230675|sp|P0A5W8|RIR1_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase R1 subunit gi|61230680|sp|P0A5W9|RIR1_MYCBO RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase R1 subunit gi|13882932|gb|AAK47468.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium tuberculosis CDC1551] gi|148722769|gb|ABR07394.1| ribonucleoside-diphosphate reductase alpha subunit nrdE [Mycobacterium tuberculosis F11] gi|253319354|gb|ACT23957.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 1435] gi|289437790|gb|EFD20283.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 605] gi|308340742|gb|EFP29593.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu006] gi|308357116|gb|EFP45967.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu010] gi|308364704|gb|EFP53555.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu012] gi|323718283|gb|EGB27461.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis CDC1551A] gi|328457628|gb|AEB03051.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 4207] Length = 725 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 185/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + + L + Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 615 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 616 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 652 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 653 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 711 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 712 LEGTEVEG 719 >gi|145296528|ref|YP_001139349.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glutamicum R] gi|140846448|dbj|BAF55447.1| hypothetical protein [Corynebacterium glutamicum R] Length = 715 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 183/673 (27%), Positives = 302/673 (44%), Gaps = 74/673 (10%) Query: 276 FDLVYLANDLKYERDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 +D ++ + K F F + LG Y Y L R + + F RV M +AL Sbjct: 81 YDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCM-VALTL 138 Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 + ++ E + + S F +TPT NSG + + SCFL + D++ I ++ Sbjct: 139 ADGDRPLAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSA 198 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 199 LQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 258 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 259 YLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDV 315 Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YGK F +I+ E+Y+ D I+ KI+A ++ + + FE+G+P+I ++D N Sbjct: 316 ERIYGKPFADISITEHYDEMVDDDRIRK-SKINARQFFQTLAEIQFESGYPYIMYEDTVN 374 Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616 +P + G + SNLC+EI +++ SE E CNLGS+N+ + F Sbjct: 375 ASNPIE--GRITHSNLCSEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAMAMDSPNF 432 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 + TI TA+R L V + + ++ +K N AIGLG M H+ Y Sbjct: 433 E-----KTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYG 487 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLA 730 S EA++ + + + + AS ++A ERG + +F+ S + G F + + Sbjct: 488 SEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKS 547 Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + EL P W LK V G+ N N A+ PT +I+ I + SI P Sbjct: 548 DKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIA 607 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + ++ E I + Y + N D+L+ Sbjct: 608 SKIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFE- 637 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R Sbjct: 638 DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRL 697 Query: 906 RSATSVEKSTLKG 918 R ++E + + G Sbjct: 698 RQ-VALEGTEVDG 709 >gi|299782856|gb|ADJ40854.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum CECT 5716] Length = 723 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 173/658 (26%), Positives = 296/658 (44%), Gaps = 82/658 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+DF F ++ Y +Y + N + + + RVAM E+ A++ + L Sbjct: 90 EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADEL 148 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TPT N G R + SCF DD+ I + L+K GG+G + Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINLN 208 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G + GV+P +K+ D NQ G+R+GA YL +H D+ +FL Sbjct: 209 NLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLGA 268 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523 +K D++ R ++ +PD F + V ++A LFSP D+ +YGK F + Sbjct: 269 KKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSP---YDVERIYGKPFSYVDITK 325 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ EI +K++A L ++ + E+G+P+I D N +P + G + SN Sbjct: 326 EYDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPIE--GTIVMSN 382 Query: 584 LCTEITL--------NSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI + + ET CNLGS N+ N + L ++R +R Sbjct: 383 LCSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRG 437 Query: 632 LDNVIDINCHTIEKA-KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L ++ D T+ + K N ++GLG MG L HI Y SP A+E + Sbjct: 438 LTHISDAESLTVVPSIKHGNDLSHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLL 497 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745 ++ + AS E+AQE+G +++F+ S + G + + G + EL P Sbjct: 498 NYWTLVASNEIAQEKGEKFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTP 557 Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W ELK+RV+ G+ N+ +A+AP + + I + S+ P Sbjct: 558 DDWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHP------------------- 598 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 ++N +++R E MI + Y + N D + +A++ D +I++ + Sbjct: 599 --IINRIEER---QEKMIGKVYYPAPYLSN------DTMPYYRSAYDTDMRSVIDTYAAA 647 Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ+ S+ L++ P+G + L+ + A G+K+ YY+R+ Sbjct: 648 QEHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705 >gi|5230835|gb|AAD41036.1|AF112535_3 ribonucleotide reductase alpha-chain [Corynebacterium glutamicum] gi|21325302|dbj|BAB99923.1| Ribonucleotide reductase alpha subunit [Corynebacterium glutamicum ATCC 13032] Length = 707 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 182/673 (27%), Positives = 299/673 (44%), Gaps = 74/673 (10%) Query: 276 FDLVYLANDLKYERDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 +D ++ + K F F + LG Y Y L R + + F RV M +AL Sbjct: 73 YDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCM-VALTL 130 Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 + ++ E + + S F +TPT NSG + + SCFL + D++ I ++ Sbjct: 131 ADGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSA 190 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 191 LQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 250 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 251 YLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDV 307 Query: 511 HDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YGK F E+Y+ D I+ KI+A ++ + + FE+G+P+I ++D N Sbjct: 308 ERIYGKPFADVSITEHYDEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMYEDTVN 366 Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616 +P + G + SNLC+EI +++ SE E CNLGS+N+ + F Sbjct: 367 ASNPIE--GRITHSNLCSEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAMAMDSPNF 424 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 + TI TA+R L V + + ++ +K N AIGLG M H+ Y Sbjct: 425 E-----KTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYG 479 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLA 730 S EA++ + + + + AS ++A ERG + +F+ S + G F + + Sbjct: 480 SEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKS 539 Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + EL P W LK V G+ N N A+ PT +I+ I + SI P Sbjct: 540 DKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIA 599 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + ++ E I + Y + N D+L+ Sbjct: 600 SKIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFE- 629 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R Sbjct: 630 DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRL 689 Query: 906 RSATSVEKSTLKG 918 R ++E + + G Sbjct: 690 RQ-VALEGTEVDG 701 >gi|215432003|ref|ZP_03429922.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis EAS054] gi|289755167|ref|ZP_06514545.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis EAS054] gi|289695754|gb|EFD63183.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis EAS054] Length = 693 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 185/668 (27%), Positives = 298/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + + L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ D + ++ AW G+KT YY+R R + Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTAPTRDVNQAQDYAWRKGIKTLYYIRLRQ-MA 679 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 680 LEGTEVEG 687 >gi|227514023|ref|ZP_03944072.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227087609|gb|EEI22921.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] Length = 723 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 173/658 (26%), Positives = 296/658 (44%), Gaps = 82/658 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+DF F ++ Y +Y + N + + + RVAM E+ A++ + L Sbjct: 90 EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADEL 148 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TPT N G R + SCF DD+ I + L+K GG+G + Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGQTINSALQLSKIGGGVGINLN 208 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G + GV+P +K+ D NQ G+R+GA YL +H D+ +FL Sbjct: 209 NLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLGA 268 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523 +K D++ R ++ +PD F + V ++A LFSP D+ +YGK F + Sbjct: 269 KKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSP---YDVERIYGKPFSYVDITK 325 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ EI +K++A L ++ + E+G+P+I D N +P + G + SN Sbjct: 326 EYDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPIE--GTIVMSN 382 Query: 584 LCTEITL--------NSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI + + ET CNLGS N+ N + L ++R +R Sbjct: 383 LCSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRG 437 Query: 632 LDNVIDINCHTIEKA-KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L ++ D T+ + K N ++GLG MG L HI Y SP A+E + Sbjct: 438 LTHISDAESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLL 497 Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745 ++ + AS E+AQE+G +++F+ S + G + + G + EL P Sbjct: 498 NYWTLVASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTP 557 Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W ELK+RV+ G+ N+ +A+AP + + I + S+ P Sbjct: 558 DDWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHP------------------- 598 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 ++N +++R E MI + Y + N D + +A++ D +I++ + Sbjct: 599 --IINRIEER---QEKMIGKVYYPAPYLSN------DTMPYYRSAYDTDMRSVIDTYAAA 647 Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ+ S+ L++ P+G + L+ + A G+K+ YY+R+ Sbjct: 648 QEHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705 >gi|19553728|ref|NP_601730.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|62391369|ref|YP_226771.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|41326710|emb|CAF21192.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN [Corynebacterium glutamicum ATCC 13032] Length = 715 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 182/673 (27%), Positives = 299/673 (44%), Gaps = 74/673 (10%) Query: 276 FDLVYLANDLKYERDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 +D ++ + K F F + LG Y Y L R + + F RV M +AL Sbjct: 81 YDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCM-VALTL 138 Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 + ++ E + + S F +TPT NSG + + SCFL + D++ I ++ Sbjct: 139 ADGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSA 198 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 199 LQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 258 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 259 YLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDV 315 Query: 511 HDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 +YGK F E+Y+ D I+ KI+A ++ + + FE+G+P+I ++D N Sbjct: 316 ERIYGKPFADVSITEHYDEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMYEDTVN 374 Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616 +P + G + SNLC+EI +++ SE E CNLGS+N+ + F Sbjct: 375 ASNPIE--GRITHSNLCSEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAMAMDSPNF 432 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 + TI TA+R L V + + ++ +K N AIGLG M H+ Y Sbjct: 433 E-----KTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYG 487 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLA 730 S EA++ + + + + AS ++A ERG + +F+ S + G F + + Sbjct: 488 SEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKS 547 Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + EL P W LK V G+ N N A+ PT +I+ I + SI P Sbjct: 548 DKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIA 607 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + ++ E I + Y + N D+L+ Sbjct: 608 SKIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFE- 637 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R Sbjct: 638 DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRL 697 Query: 906 RSATSVEKSTLKG 918 R ++E + + G Sbjct: 698 RQ-VALEGTEVDG 709 >gi|184154756|ref|YP_001843096.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus fermentum IFO 3956] gi|260663215|ref|ZP_05864107.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] gi|183226100|dbj|BAG26616.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus fermentum IFO 3956] gi|260552407|gb|EEX25458.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] Length = 723 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 173/658 (26%), Positives = 296/658 (44%), Gaps = 82/658 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+DF F ++ Y +Y + N + + + RVAM E+ A++ + L Sbjct: 90 EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADEL 148 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TPT N G R + SCF DD+ I + L+K GG+G + Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINLN 208 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G + GV+P +K+ D NQ G+R+GA YL +H D+ +FL Sbjct: 209 NLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLGA 268 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523 +K D++ R ++ +PD F + V ++A LFSP D+ +YGK F + Sbjct: 269 KKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSP---YDVERIYGKPFSYVDITK 325 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ EI +K++A L ++ + E+G+P+I D N +P + G + SN Sbjct: 326 EYDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPIE--GTIVMSN 382 Query: 584 LCTEITL--------NSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI + + ET CNLGS N+ N + L ++R +R Sbjct: 383 LCSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRG 437 Query: 632 LDNVIDINCHTIEKA-KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L ++ D T+ + K N ++GLG MG L HI Y SP A+E + Sbjct: 438 LTHISDAESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLL 497 Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745 ++ + AS E+AQE+G +++F+ S + G + + G + EL P Sbjct: 498 NYWTLVASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTP 557 Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W ELK+RV+ G+ N+ +A+AP + + I + S+ P Sbjct: 558 DDWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHP------------------- 598 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 ++N +++R E MI + Y + N D + +A++ D +I++ + Sbjct: 599 --IINRIEER---QEKMIGKVYYPAPYLSN------DTMPYYRSAYDTDMRSVIDTYAAA 647 Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ+ S+ L++ P+G + L+ + A G+K+ YY+R+ Sbjct: 648 QEHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705 >gi|261749411|ref|YP_003257096.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497503|gb|ACX83953.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 571 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 176/625 (28%), Positives = 273/625 (43%), Gaps = 106/625 (16%) Query: 305 YFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y I G + E P + R++ A K +K K +F+N+L + STP + N Sbjct: 27 YLTTIKGGYLLDGETPFEAYKRLSENAA-KILKKPKIEKKFFNILWKGWLIPSTPVMVNL 85 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI-HGTNGK 420 GT SCF V D +Y I+ E A+L+K+ GG D++ +R +G+ I +GT G Sbjct: 86 GTEKGLPISCFSGRVGDSMYEIYRKNLEMAILSKHGGGTSYDFSLIRSVGSPIKNGTLGT 145 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S G+IPF+K + +A QG R+GAV YL H + EFL +R+ GD R+ H+++ Sbjct: 146 SDGIIPFVKSYDSAIIASKQGSTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCHNVH 205 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + FM++V + G ER Sbjct: 206 QGVILSNSFMEKVLKKNG--------------------------KER------------- 226 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEET 597 +LW L +TG P++ FKD N P+ + G+ +H SNLC+EI L + T Sbjct: 227 ---SLWINTLKERVKTGEPYLFFKDNANRNLPENWKKNGLKIHHSNLCSEIMLPTDESHT 283 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651 VC L S+NL + K T+ A+ LD V+ N IE A + Sbjct: 284 LVCCLSSLNLYKYVE------WKDTQTVFYAILFLDAVLQEFINKGKNIKGIEDAVRFAE 337 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 RA+GLG +G+ S L IP+ S ++ + + I + A+ LA+E G Sbjct: 338 KSRALGLGALGWHSYLQSEMIPFISVKSEILTHDIFGKIRSESQKATQYLAKEYGE---- 393 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 S W+ G G RN MA+AP + Sbjct: 394 --SEWNIGT------------------------------------GRRNLTLMAMAPNRS 415 Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 A + G+SQ ++P N+YV + G N +L L + + + GS Sbjct: 416 SAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKILIKSGYNLPEVWEQIANEKGS 475 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889 + + + K + EI+ + LI+ AS RQK+IDQ QS+NL + + K ++ ++ Sbjct: 476 CLGLTGLSEKEKNVFLCFKEINQLELIKQASIRQKYIDQGQSINLAFHQNTPAKFINKVH 535 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914 +AW +GLK+ YY RS S E + Sbjct: 536 LEAWKIGLKSLYYYRSESILRAENT 560 >gi|116494954|ref|YP_806688.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei ATCC 334] gi|227535044|ref|ZP_03965093.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631446|ref|ZP_04674477.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105104|gb|ABJ70246.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus casei ATCC 334] gi|227187359|gb|EEI67426.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525911|gb|EEQ64912.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 723 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 162/609 (26%), Positives = 278/609 (45%), Gaps = 80/609 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E AV+ + + + +TP+ N+G R +L SCFL + DD+ I A+ L+ Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD + + NA LFSP V +Y Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVY 314 Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 GK F + Y+ IK + KI A L ++ + E+G+P+I D N +P Sbjct: 315 GKPFSYVDITKEYDNMVANPAIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373 Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 + G + SNLC+EI LN+ E + CNLGS N+ + F Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDF---- 427 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + + NH +IGLG MG + H+ Y SPE+ Sbjct: 428 -GRSVEAMVRALTYVTDHSNIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPES 486 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL- 736 ++ + ++++ + AS ++AQERG ++ +F+ S + D F + + A D++ Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVR 546 Query: 737 ----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 ++ ++ W+ LK V G+ + N MA+AP +I+ I S S+ P Sbjct: 547 ALFDGIHIPTQADWEALKTSVMKDGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +VN ++ R E I + Y + N D + +A++ID Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPDLSN------DTMPYYQSAYDID 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896 +I+ + Q+ +DQ ++ L++ D+ + + L+ + A G Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKG 696 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 697 IKSIYYIRT 705 >gi|308178759|ref|YP_003918165.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter arilaitensis Re117] gi|307746222|emb|CBT77194.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter arilaitensis Re117] Length = 721 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 168/615 (27%), Positives = 271/615 (44%), Gaps = 71/615 (11%) Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378 F RVA E + + S F +TPT N+G + +L SCFL + D Sbjct: 133 FGERVAATALFLGQGNETLTTSLADEMISGRFQPATPTFLNAGKAQRGELVSCFLLRLED 192 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I + L+K GG+ T +R GA I ++ GV+P +K+ D+ Sbjct: 193 NLESIGRGVNSALQLSKRGGGVALLLTNLRETGAPIKQIQNQASGVVPVMKILEDSFSYA 252 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ K +N Sbjct: 253 NQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDVTFKLAKENRD 312 Query: 499 WTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP +V+ YGK ++Y+ I+ ISA ++ + + FE+ Sbjct: 313 MHLFSPYDVA---REYGKPLSDLSVNDHYDELVANPRIRK-TTISAREFFKTLAELQFES 368 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604 G+P++ F+D N +P G V+ SNLC+EI TL+++ T + CNLGS Sbjct: 369 GYPYVLFEDTVNRANPL--AGHVNMSNLCSEILQVNTPSTLDTAGGYTKIGNDISCNLGS 426 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663 +N+ A D +TI TAVR L +V D + + N+ AIGLG M Sbjct: 427 LNIAA-----AMDSPDFGATIETAVRALTSVSDQTDIDAVPSIAAGNNASHAIGLGQMNL 481 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP 722 L I Y S E ++ D +++HA+ S ++A ERG ++ F S + G + Sbjct: 482 HGFLASQRIRYGSEEGIDFTDIYFLTVTYHALRVSNQIAIERGTTFAGFGTSAYADGSYF 541 Query: 723 --------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + + +A + ++ + +R W L+K V G+ N+ AI PT +I+ Sbjct: 542 DKYIERDWLPATERVAALFSQVGIAIPTREDWQALRKSVMAHGIYNAYLQAIPPTGSISY 601 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--G 832 + + SI P + ++ E + L Y + Sbjct: 602 VNNATASIHPIAAKIEIRK------------------------EGKLGRLYYPAPHMTDA 637 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 NIE D A+EI +I++ + + +DQ SL L+ D + + ++ Sbjct: 638 NIEFFED--------AYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDSATTRDINKAQIY 689 Query: 892 AWLMGLKTTYYLRSR 906 AW G+KT YY+R R Sbjct: 690 AWRAGIKTLYYIRLR 704 >gi|191638465|ref|YP_001987631.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei BL23] gi|190712767|emb|CAQ66773.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus casei BL23] gi|327382497|gb|AEA53973.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei LC2W] gi|327385695|gb|AEA57169.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei BD-II] Length = 723 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 162/609 (26%), Positives = 278/609 (45%), Gaps = 80/609 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E AV+ + + + +TP+ N+G R +L SCFL + DD+ I A+ L+ Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD + + NA LFSP V +Y Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVY 314 Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 GK F + Y+ IK + KI A L ++ + E+G+P+I D N +P Sbjct: 315 GKPFSYVDITKEYDNMVANPAIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373 Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 + G + SNLC+EI LN+ E + CNLGS N+ + F Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDF---- 427 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + + NH +IGLG MG + H+ Y SPE+ Sbjct: 428 -GRSVEAMVRALTYVTDHSNIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPES 486 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL- 736 ++ + ++++ + AS ++AQERG ++ +F+ S + D F + + A D++ Sbjct: 487 LDFTNIYFLLLNYYTLRASNKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVR 546 Query: 737 ----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 ++ ++ W+ LK V G+ + N MA+AP +I+ I S S+ P Sbjct: 547 ALFDGIHIPTQADWEALKTSVMKDGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +VN ++ R E I + Y + N D + +A++ID Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPDLSN------DTMPYYQSAYDID 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896 +I+ + Q+ +DQ ++ L++ D+ + + L+ + A G Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKG 696 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 697 IKSIYYIRT 705 >gi|157955408|gb|ABW06100.1| NrdE [Bacillus cereus] Length = 694 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 170/649 (26%), Positives = 304/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+ GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|304390567|ref|ZP_07372520.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326323|gb|EFL93568.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 733 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 182/676 (26%), Positives = 291/676 (43%), Gaps = 82/676 (12%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET 333 F+ + + Y F F +LG Y Y L +G R + F RV M Sbjct: 101 FEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALYLAR 158 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAM 392 E+ AV+ + + + +TPT N+G + ++ SCFL + D++ I + Sbjct: 159 GDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSALQ 218 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ T +R GA I +S GV+P +K+ D+ NQ G R+GA Y+ Sbjct: 219 LSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYI 278 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 +H D+ FLD ++ D++ R ++ +PD+ + LFSP D+ Sbjct: 279 SAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVER 335 Query: 513 LYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YG F E Y D I+ +KI A ++ + + FE+G+P+I F+D N Sbjct: 336 VYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNRA 394 Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618 +P G + SNLC+EI LN V CNLGS+N+ + F Sbjct: 395 NPID--GRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKTLESPDF-- 450 Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 A +I A+R L V D+ N + ++ N AIGLG M L I Y S Sbjct: 451 ---AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSD 507 Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAE 731 E ++ + +F+A+ AS LA ERG + F+ S + G + D A+ Sbjct: 508 EGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAK 567 Query: 732 VRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 VR EL + LP W L +K G+ N N AI PT +I+ I + SI P Sbjct: 568 VR-ELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIAS 626 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKK 843 + ++ +G IG + + +D Sbjct: 627 KIEIRK----------------------------------EGKIGRVYYPAPYMTNDNLD 652 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI +I++ + K +DQ SL L+ D + + ++ AW G+K+ YY Sbjct: 653 YYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYY 712 Query: 903 LRSRSATSVEKSTLKG 918 +R R A ++E + ++G Sbjct: 713 IRLRQA-ALEGTEVQG 727 >gi|298345733|ref|YP_003718420.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 43063] gi|298235794|gb|ADI66926.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 43063] Length = 714 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 181/665 (27%), Positives = 287/665 (43%), Gaps = 82/665 (12%) Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y F F +LG Y Y L +G R + F RV M E+ AV+ Sbjct: 93 YSHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALYLARGDEQLAVDIME 150 Query: 345 LLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TPT N+G + ++ SCFL + D++ I + L+K GG+ Sbjct: 151 EIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSALQLSKRGGGVALL 210 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S GV+P +K+ D+ NQ G R+GA Y+ +H D+ FL Sbjct: 211 LTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYISAFHPDIMSFL 270 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IA 521 D ++ D++ R ++ +PD+ + LFSP D+ +YG F Sbjct: 271 DTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVERVYGVPFSDISV 327 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y D I+ +KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 328 TEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNRANPID--GRIIM 384 Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI LN V CNLGS+N+ + F A +I A+ Sbjct: 385 SNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKALESPDF-----AKSINVAI 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ N + ++ N AIGLG M L I Y S E ++ + Sbjct: 440 RALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDEGLDFTNMYFY 499 Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTS 742 +F+A+ AS LA ERG + F+ S + G + D A+VR EL + Sbjct: 500 ATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKVR-ELFEKSSI 558 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 LP W L +K G+ N N AI PT +I+ I + SI P + ++ Sbjct: 559 HLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKIEIRK----- 613 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPM 854 +G IG + + +D + A+EI Sbjct: 614 -----------------------------EGKIGRVYYPAPYMTNDNLDYYQDAYEIGYE 644 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 +I++ + K +DQ SL L+ D + + ++ AW G+K+ YY+R R A ++E Sbjct: 645 KIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQA-ALEG 703 Query: 914 STLKG 918 + ++G Sbjct: 704 TEVQG 708 >gi|307244662|ref|ZP_07526766.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus stomatis DSM 17678] gi|306492043|gb|EFM64092.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus stomatis DSM 17678] Length = 702 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 176/655 (26%), Positives = 290/655 (44%), Gaps = 78/655 (11%) Query: 286 KYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340 +Y + F F Y+ Y+ Y L + +E + ++ +A +TE K+ Sbjct: 78 EYIKSFGFSFQSYMSASKFYENYALKSDDGEYILEDYNDKILICSLAIANGDTEVAKKVA 137 Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + L F +TPT N G R +L SCFL TV D GI A+ L+K GG Sbjct: 138 K---RLIRQEFQPATPTFLNLGRKRAGELVSCFLLTVEDSCEGISYAVASANHLSKIGGG 194 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + T +R I G G S GV+ K+ + NQ G R+GA YL H D Sbjct: 195 VALNLTRLRARAESIKGIEGASGGVVGVAKMLEQSFSYFNQMGARQGAGAVYLNVLHADF 254 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 + +D +K D+R R ++ IPD+FM+ +N F P + + L+ + Sbjct: 255 DALMDTKKINADERVRLATLSIGAIIPDVFMRLAEKNETGYAFYPHSIYKKYGLHLDDLN 314 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y++ +I+ ++I+ ++ E+G+P+I + D N + +G++ Sbjct: 315 ME-EWYDKLVADPDIRK-KEINPRQYLTRIAATQMESGYPYIVYIDTANRDHTLKDLGMI 372 Query: 580 HSSNLCTEI----------TLNSSSEE---TAVCNLGSINLLAHFANNQFDYDKLASTIR 626 SNLC EI + SS+ + CNLGS+N++ + + D I Sbjct: 373 RMSNLCCEIFQYQEPSQIESYGSSASQWGQDVSCNLGSLNIVNLMESKEVD-----KAID 427 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TAVR L +V D + H + K N +IGLG M L +I Y + EAVE AD Sbjct: 428 TAVRFLTDVSDRTDIHQVPTIKMGNDKSHSIGLGAMNLHGYLMKNNIMYVTDEAVEFADV 487 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + ++AI S+E+A+ER + F+ S + +G D +G EV ++ +L Sbjct: 488 FFAMMRYYAIKTSMEIARERKETFEGFEKSEYAKGRAS-DVLGKYYEVDFRPKSDKVKKL 546 Query: 745 ----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 W +L VK +G+ N+ MAIAPT +I+ + + SI P + + V+ Sbjct: 547 FEGIYVPDKNDWAKLLDEVKEVGIYNAYLMAIAPTQSISYVQNSTSSIMPITEQIEVR-- 604 Query: 795 MSGDFTVVNS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + GD T + FL NE M+ + +A+ D Sbjct: 605 IYGDSTTIYPMPFLTNE---------NML----------------------FYRSAYNTD 633 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I+ + Q +DQ S L++ D+ + + + Y A+ GLK+ YY R++ Sbjct: 634 MFKVIDVVAAAQGHVDQGISTTLFVTDDKTTRDIARYYIYAYKKGLKSLYYTRTK 688 >gi|262362561|gb|ACY59282.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D106004] Length = 583 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 168/619 (27%), Positives = 284/619 (45%), Gaps = 67/619 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382 VA+ LA T + A E + S F +TPT N G + +L SCFL + D++ Sbjct: 2 VALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMES 58 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I ++ L+K GG+ + +R +GA I +S GVIP +K+ D NQ G Sbjct: 59 IGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLG 118 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N LF Sbjct: 119 ARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLF 178 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP ++ ++ + E I+ E Y D I+ KI A ++ + + FE+G+P++ Sbjct: 179 SPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFESGYPYMM 236 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 F+D N +P + G ++ SNLC+EI +N+ +E + CNLGS+N+ Sbjct: 237 FEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLGSLNIA-- 292 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D +I A+R L V ++ N ++ +K N AIGLG M L Sbjct: 293 ---QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLAR 349 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-- 726 + Y S EA++ + +++HAI AS +LA ER + + F S + G F I Sbjct: 350 ERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAFFSKYIEQ 409 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + + + + ++ W L++ V G+ N N A+ PT +I+ I + Sbjct: 410 SWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSISYINHSTS 469 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI P +V+ ++ R E I + Y + N D+ Sbjct: 470 SIHP---------------------IVSPIEIR---KEGKIGRVYYPAPYMTN-----DN 500 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 L + + A++I P +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 501 L-EYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKT 559 Query: 900 TYYLRSRSATSVEKSTLKG 918 YY+R R ++E + ++G Sbjct: 560 IYYIRLRQ-MALEGTEVEG 577 >gi|116493226|ref|YP_804961.1| ribonucleotide-diphosphate reductase subunit alpha [Pediococcus pentosaceus ATCC 25745] gi|116103376|gb|ABJ68519.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Pediococcus pentosaceus ATCC 25745] Length = 721 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 179/718 (24%), Positives = 313/718 (43%), Gaps = 88/718 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 RE L K+ +A + L + E+ ++A L+ E FD + D ++ Sbjct: 32 REALAAFLKENVQANTMQFDSLRERFDYLLKEDYIEAALVEE--YSFDFIEKLYDFLKQQ 89 Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F+ ++ Y +Y L N + + + F RVAM E+ A+ + + Sbjct: 90 DFHFQSFMAAYKFYAQYALKTNNNEYYL-ENFIDRVAMNALYFADGNEELAMNIADEIIH 148 Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +H +L SCFL DD+ I + L+K GG+G + T + Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----E 523 D++ R ++ +PD F + + LFSP V +YG+ + AY + Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYDLIKHDEDMYLFSPYSV---EKVYGEPY--AYVDITK 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ IK F K+ A + ++ + E+G+P+I D N +P G + SN Sbjct: 324 EYDNMVKNPAIKKF-KVKARNIENEISKLQQESGYPYIVNVDTANRENPI--YGKIVMSN 380 Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +++ T + CNLGS N++ N ++ T VR Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTKLGTDISCNLGSTNIV-----NMMQTPHFGKSVETMVRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + + N IGLG MG L H+ Y +++E + Sbjct: 436 LTFVTDHSDIDVVPSIQNGNALAHTIGLGAMGLHGYLAKNHLYYGEADSIEFTSVYFMLL 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSR 743 ++ + AS ++A+E+ + +F S + G + + G + EL + S Sbjct: 496 NYWTLKASNQIAKEKNQVFHNFDKSKYADGSYFDKYVENDFGPKSNRVKELFNGIEIPSV 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W +LK V G+ + N MA+APT +I+ I + S+ P Sbjct: 556 EDWKQLKADVMADGLYHQNRMAVAPTGSISYINDATASLQP------------------- 596 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +VN++++R E I + + + N D K + +A++ID +I+ + Sbjct: 597 --IVNKIEER---QEKKIGKIYFPAPYLSN------DTLKYYQSAYDIDMRKVIDIYAAA 645 Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ S+ ++ D+ + + L+ + A G+K+ YY+R+ Sbjct: 646 QQHVDQGMSMTFFMRSTIPAGIYDWKEGRTDKMTTRDLNILRNYAHHEGIKSIYYVRT 703 >gi|126179941|ref|YP_001047906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoculleus marisnigri JR1] gi|125862735|gb|ABN57924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoculleus marisnigri JR1] Length = 548 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 168/611 (27%), Positives = 268/611 (43%), Gaps = 92/611 (15%) Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 +L RY L E P F RVA + R+ EF++LLS+ F+ ++PTL Sbjct: 10 LLEGRYLLPG-----ETPAGLFSRVADAVG-----GTARSREFFSLLSALLFLPNSPTLM 59 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N+GT QLS+CF+ + D L GIFG L A++ + GG G ++ +R G ++G G Sbjct: 60 NAGTSAGQLSACFVLPMEDTLEGIFGTLGHMALIHQSGGGTGFSFSLLRPRGDAVNGVTG 119 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + G + F++V + AV QGG+R+GA L H D+EEF+ ++ G + Sbjct: 120 AATGPVSFMRVFDAATGAVRQGGRRRGANMGVLAASHPDIEEFVTAKQEGG-----LSNF 174 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 N + + + F + + + L +P + S V++ Sbjct: 175 NISVGVDERFFRCLATGKEYDLINPRDGS---------------------------VWKS 207 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A +LWR + +G P + F D N ++ H+G + ++N C E L Sbjct: 208 VDAGSLWRLIAASACISGEPGVLFLDEINRQNTTPHLGRIEATNPCGEQPLYPYES---- 263 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGS+NL + D D L + +R V LD VID N + + ++ R IGLG Sbjct: 264 CNLGSVNLARCVRQHDLDEDLLITVVRCGVDFLDAVIDANRFPLPEIRERTLATRKIGLG 323 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF AL L IPY S EA+ A ME I A S E+ +E G++ + +GS++ Sbjct: 324 VMGFAEALIRLGIPYESEEALRFAGSLMEHIEEMARERSEEIGKEIGSFPAIEGSIFSG- 382 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 MRN+ IAPT +I I G + Sbjct: 383 -------------------------------------EMRNATVTTIAPTGSIHLIAGTT 405 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP- 838 I+P + Y ++ + G + S LV R + + ++ H G + +P Sbjct: 406 SGIEPVFSFAYDRT-IDGRPVSIVSDLVAGFLPRTAGGKDVAEHVRRH----GTVAGLPL 460 Query: 839 -DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMG 896 D + + TA EI P + + QK +D A S + L + + ++ ++ A +G Sbjct: 461 DDHARDLFRTATEIAPEHHVRMQAAFQKHVDNAVSKTVNLPQSATVDEIACVFSLAHDLG 520 Query: 897 LKTTYYLRSRS 907 K T R RS Sbjct: 521 CKGTTVYRYRS 531 >gi|300173990|ref|YP_003773156.1| ribonucleoside-diphosphate reductase subunit alpha [Leuconostoc gasicomitatum LMG 18811] gi|299888369|emb|CBL92337.1| ribonucleoside-diphosphate reductase, alpha subunit [Leuconostoc gasicomitatum LMG 18811] Length = 723 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 171/645 (26%), Positives = 294/645 (45%), Gaps = 83/645 (12%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y++Y L N + + + + RVAM +E+ A+ + + + +TP+ N Sbjct: 104 FYNQYALKTNDGQ-QYVETYVDRVAMNALYYADGREELALRLADEMIHQRYQPATPSFLN 162 Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G R +L SCF+ DD+ I + L+K GG+G + + VR GA + G + Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTVNSALQLSKMGGGVGINVSNVREAGAPVMGISN 222 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + G++P +K+ D+ +Q G R+GA YL +H D+ FL +K D++ R + Sbjct: 223 SAGGIVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKKENADEKIRVKTL 282 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536 + IPD F V +N LFSP D+ +YGK F +I E Y+ + +I Sbjct: 283 SLGLTIPDKFYDLVRKNDVMYLFSP---VDVEKVYGKPFNYIDITSE-YDNMVNNDKITK 338 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589 + + A L ++ + E+G+P++ D N +P G + SSNLC+EI Sbjct: 339 YH-VDARFLEEEISKLQQESGYPYVINIDVANRANPI--AGKIISSNLCSEILQVQTPSE 395 Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643 L++ + T + CNLGSIN++ A N F ++ T VR L V D N + Sbjct: 396 LDNGQQYTRLGSDVSCNLGSINIVNMMATNNF-----GESVDTMVRALTYVSDTSNLDVV 450 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 K N AIGLG MG + + Y E+++ +++++I AS+ +A+ Sbjct: 451 PSIAKGNTEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTTTFFMTLNYYSIKASMAIAK 510 Query: 704 ERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTI 756 ER + F+ S + G + D +V A N ++ W ELK V Sbjct: 511 ERNDTFFEFEKSTYADGSYFDKYLEEDWAPRTQKVAASFAQHNVPTKHDWAELKADVAKY 570 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GM N+ AIAPT +I+ + + ++ P +VN++++R Sbjct: 571 GMYNAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E MI + Y + N E +P + +A++ID +I+ + Q+ IDQ +L L+ Sbjct: 607 QEGMIGKVYYPAPGLNN-ETMP-----YYVSAYDIDMRKVIDIYAAAQEHIDQGMALTLF 660 Query: 877 L----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + D+ + + L + A+ G+K+ YY+R+ Sbjct: 661 MRSTLSSDLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT 705 >gi|86156144|gb|ABC86790.1| ribonucleotide reductase alpha subunit [Borrelia turicatae] Length = 691 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 182/712 (25%), Positives = 329/712 (46%), Gaps = 90/712 (12%) Query: 237 YKKPQKATHHEMQC-LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE- 294 +K P + H+ + LY ++ Y EE + + ++LV L N F F+ Sbjct: 41 FKNPNERMHYLIDNDLYENFYENYSEEQI--------LEIYNLVSLEN-------FQFKS 85 Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHF 351 Y+ Y Y L +N + +A+ L L + + K A+E + + Sbjct: 86 YMSASKFYKDYALKMNDGNTYLESYEDRIIAVSLFLADGCFDFALKLALE----MIKQRY 141 Query: 352 MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N+G + +L SCFL V D L I + L+K GG+ + + +R Sbjct: 142 QPATPTFLNAGKKVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRAR 201 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G I G ++G+IP +K+ D +Q G+RKGA YL +H D+E+FLD +K Sbjct: 202 GEEIRGIPNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINA 261 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D++ R ++ IPD F Q + F+P + + E + E Y+ A Sbjct: 262 DEKSRVQTLSLGVIIPDKFFDIAKQGKNYYAFAPYSLYKATGRFMNEIDFDLE-YDLFAS 320 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-- 588 I + +++SA + ++ + FE+G+P+I ++ CN+ +P + +G + SNLCTEI Sbjct: 321 DPRI-LKKELSARDILIRIARLQFESGYPYIVYQTACNLNNPLKGLGKIKMSNLCTEIFQ 379 Query: 589 -----TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 + EE + C LGS+N++ + N+ F++ T+ A+R L +V+D Sbjct: 380 IQTPSVIGDYGEEDLIGYDISCILGSLNIV-NVINSDFEH-----TVDIAMRALTSVVDK 433 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +K+N+ + A+GLG+M L I Y S EA++ ++F+++ + Sbjct: 434 ADIKNAPSIRKANNDYHAVGLGVMNLHGFLIKNKISYESAEALDFVRTFFMLLNFYSLKS 493 Query: 698 SVELAQERG-AYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTSRLPWDE 748 S+ +A++RG A+ F S + G + ++ ++ L + S W+ Sbjct: 494 SMNIARDRGCAFKDFNKSEYYNGNYFDMYLSEDFTPKTDVIKQIFSGLKLPLKS--DWES 551 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ V+ G+ +S +A+APT +I+ + + S+ P + V++ + G+ T Sbjct: 552 LKRDVQIHGLYHSYRLAVAPTQSISYVQNATTSLMPIVEP--VEARVYGNSTT------- 602 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 Y+ N E + +A+ +D LI+ S Q+ +D Sbjct: 603 -----------------YYPMPYLNREN-----ALLFKSAYYMDMKKLIDLISEAQRHVD 640 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 Q S LY+ +E S ++L +Y A GLK+ YY R+++ SV++ L + Sbjct: 641 QGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 691 >gi|307352276|ref|YP_003893327.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase [Methanoplanus petrolearius DSM 11571] gi|307155509|gb|ADN34889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoplanus petrolearius DSM 11571] Length = 566 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 156/567 (27%), Positives = 265/567 (46%), Gaps = 95/567 (16%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 +IL RY+ S E+ + RVA +A E+ E+++++++ F+ ++PTL Sbjct: 8 RILMLRYYRDDEKSFDELCR----RVAGAIADSPEEE----AEYFDMMNTLRFLPNSPTL 59 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N+GT QL++CF V D + IF A++ AM+ K GG G +++ +R GA + + Sbjct: 60 MNAGTDMNQLAACFTLYVGDSITEIFDAMKWGAMIHKSGGGTGYNFSNIRPEGAFVESSE 119 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 G + G + F+K + + QGG+R+GA L H D+ +F++ + GD + Sbjct: 120 GVASGPVSFMKAFDAVTGVIRQGGRRRGANMGILNVDHPDILKFINSKTREGD----IAN 175 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM V AG F+ + E A+ Sbjct: 176 FNISVMVTDRFMGLV--EAG------------------RFDRVWITREETAE-------- 207 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 +I+ +W + ++ G P + F D N ++ +G ++++N C E L Sbjct: 208 EITVGDIWNGITEGIWRNGEPGLLFYDEINRKNMTPALGNINATNPCGEQPLLPFES--- 264 Query: 599 VCNLGSINLLAHFANNQFDYD--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 C LGSINL + F + + + D L TIRTAV+ LD +ID N + I + +++ R + Sbjct: 265 -CVLGSINL-SKFIDEKGETDLASLEKTIRTAVKFLDRIIDKNRYPIPEIEEATKRTRKV 322 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLGLMG AL + IPY SPE + M+F++ A+S S LA+E+G + ++KGS+W Sbjct: 323 GLGLMGVHDALIMRRIPYDSPEGRKYCGSIMQFVAETAVSESGRLAEEKGPFPAWKGSVW 382 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + K K + RN+ IAPT +I+ I Sbjct: 383 E---------------------------------KNGKMV--RNAALTTIAPTGSISIIA 407 Query: 777 GVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL-----------KQRDLWDEAMISDL 824 S I+P + Y + N +G+ F +V+ EL ++R+ ++S + Sbjct: 408 ECSSGIEPVFSYSYTRMNTAGESFRMVHPLFKKELETVAGKLFPNPEERERRVGEVLSHV 467 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEI 851 + G++ +I +PD KI TA +I Sbjct: 468 -HETGTVQDIGWLPDSFTKIFTTALDI 493 >gi|83722608|ref|YP_443886.1| ribonucleotide reductase subunit 1 [Papiine herpesvirus 2] gi|75905761|gb|ABA29293.1| UL39 [Papiine herpesvirus 2] Length = 986 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 178/651 (27%), Positives = 290/651 (44%), Gaps = 62/651 (9%) Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL-----------KETEKEKRAVEF 342 GLQ + Y+ ++L I+G +E + R+A LA ++ + F Sbjct: 344 GLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACHADLAGRVVFGRDASWLEMFTYF 403 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQEN-AMLAKYSGGL 400 +N + + STP + GTR P SSC+L + A+ +N A + SGG+ Sbjct: 404 FNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAITQNVAPILARSGGI 463 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G L + ++P LK + A N R V YLE WH D+ Sbjct: 464 G--------LCLQNFNDRPGNASLMPALKALDSIVAAYNDQSLRPTGVTVYLEPWHSDIM 515 Query: 461 EFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLHDL 513 L ++ G++ RR ++ +A W+PDLF KR+ +N WTLFS L Sbjct: 516 AVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFSHRGGMHLASF 575 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G+EFE Y E + GE + + A A+ R T TG P++ FKD N Sbjct: 576 HGEEFERLYRCQE-ELGFGEAVPIQDV-AYAIVRAAAT----TGSPFVMFKDAVNRHYIY 629 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 G + SNLCTEI ++++++ VCNL S+NL FD+ +L ++R V ++ Sbjct: 630 DTQGAAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFARLRESVRACVLMV 689 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID + ++ + R++G+G+ G +A + + AS E E+ E + Sbjct: 690 NIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVMLL 749 Query: 693 HAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+ AS L GA + FK S++ G F + + R W+ L+ Sbjct: 750 AAMQASNALCFH-GARPFREFKRSVFRAGRFHWEG---FPDARPRYEGE------WEMLR 799 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + + G+RNS +A+ PT A + VS+ P + N++ K G+ N+ L+ EL Sbjct: 800 QSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLREL 859 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESASRRQK 865 ++ + + D ++ER L H TAFE D LI+ + R Sbjct: 860 RE-TFSGRRLNEVIDALDAKQWSVERALPCLAADHPLRRFKTAFEYDQELLIDLCADRAP 918 Query: 866 WIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 ++D +QSL L++ E + L + A+ GLKT YY + R AT+ Sbjct: 919 YVDHSQSLTLHVTERADGTLPASSLVRLLVHAYKRGLKTGMYYCKVRKATN 969 >gi|332671992|ref|YP_004455000.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulomonas fimi ATCC 484] gi|332341030|gb|AEE47613.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas fimi ATCC 484] Length = 715 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 183/660 (27%), Positives = 290/660 (43%), Gaps = 72/660 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F+ +LG Y Y L +G R +E + VA+ LA + + AV Sbjct: 94 YSKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALSLAAGD---QDFAVNLV 150 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + S F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 151 DEIVSGRFQPATPTFLNLGKAQRGEPVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 210 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 211 LLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 270 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + +N LFSP +V ++ + + + Sbjct: 271 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEPMYLFSPYDVERVYGVPFADVNVT- 329 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y D I+ KISA ++ + + FE+G+P++ F+D N +P + G + S Sbjct: 330 EKYYEMVDNAAIRK-TKISAREFFQTLAELQFESGYPYVMFEDTVNRANPIK--GKITHS 386 Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI T N V CNLGS+N+ D ++ TA+R Sbjct: 387 NLCSEILQVSTPSTFNEDLSYAEVGRDISCNLGSMNIAL-----SMDSPDFGKSVETAIR 441 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + ++ K +N AIGLG M L I Y S E ++ + Sbjct: 442 ALTAVSDQTDIESVPSVKLANRGGHAIGLGQMNLHGYLARERIFYGSDEGLDFTNIYFYT 501 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRL 744 +++HAI AS LAQER A+ F+ S + G + + R E L + Sbjct: 502 VAYHAIRASNLLAQERKQAFYGFEDSKYATGEYFQKYVEKEWAPRTERVRVLFAEAGVHI 561 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 P W EL V+ G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 562 PTQDDWRELAALVQEHGLYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRV 621 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 F+ N+ N+E D A+EI +I++ Sbjct: 622 YYPAPFMTND-----------------------NLEYYQD--------AYEIGYEKVIDT 650 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 651 YAEATQHVDQGLSLTLFFKDTATTRDLNKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 709 >gi|325963522|ref|YP_004241428.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469609|gb|ADX73294.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 706 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 183/660 (27%), Positives = 293/660 (44%), Gaps = 74/660 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y++ F FE +LG Y Y L +G R +E + VA+ LA E+ A + Sbjct: 87 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLA---RGNEQLATQMV 143 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT N+G + +L SCFL + D++ I ++ L+K GG+ Sbjct: 144 DEIIEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 203 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 204 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 263 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ IPD+ + ++ LFSP D+ +YG F Sbjct: 264 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSP---YDVERVYGMPFSDVS 320 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D IK KI A ++ + + FE+G+P+I F+D N +P G + Sbjct: 321 VTEKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPID--GKII 377 Query: 581 SSNLCTEI-------TLN-----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI T N + + + CNLGS+N+ D TI TA Sbjct: 378 MSNLCSEILQVSQPTTYNDDLSYADTGKDISCNLGSLNIA-----KTMDSPDFGLTIETA 432 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D+ N ++ K N AIGLG M L + Y S E ++ + Sbjct: 433 IRSLSAVSDMSNITSVPSIAKGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYF 492 Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNR 740 + +HA+ AS LA E G + F+ S + G + + + +VR+ ++ Sbjct: 493 YSVVYHAVRASNLLAIETGQTFGGFEKSKYASGEYFDKYTEQEWVPQTEKVRELFKNVHI 552 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 ++ W LK V G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 553 PTQADWLALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKLGRV 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +L N+ N+E D A+EI +I++ Sbjct: 613 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKVIDT 641 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E + ++G Sbjct: 642 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 700 >gi|157955355|gb|ABW06060.1| NrdE [Bacillus thuringiensis serovar dakota] Length = 694 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 170/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + ++GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIADESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|327198237|ref|YP_004306813.1| putative ribonucleotide reductase A subunit [Pseudomonas phage KPP10] gi|297591763|dbj|BAJ09183.1| putative ribonucleotide reductase A subunit [Pseudomonas phage KPP10] gi|323145835|gb|ADX32076.1| hypothetical protein nrdE [Pseudomonas phage P3_CHA] gi|323146021|gb|ADX32261.1| hypothetical protein nrdE [Pseudomonas phage PAK_P3] Length = 618 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 170/571 (29%), Positives = 258/571 (45%), Gaps = 96/571 (16%) Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL+ + D G+ A E L+ G G+ A I + S GVI Sbjct: 116 SCFLSMIADSRKGLTTASGEAKELSMAGG--------GVGVYAGIRAPDELSTGVIEHAG 167 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488 + A Q R+G++ YL+ H + FL +R G D + + ++N IPD Sbjct: 168 DYDVMCRAYRQTRTRRGSMAMYLDVAHPEFPVFLQMRNPVGGDPKLKRFNLNNGANIPDA 227 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+ V + W P K RK+ A LW + Sbjct: 228 FMEAVIKGEDWEFVDPKHG---------------------------KTGRKVPARELWEE 260 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ML + +TG P++ F D N P+ + V SNLC+EITL +S + TAVC L S+ Sbjct: 261 MLQVRKDTGEPFMLFVDTVNRNLPECITHPLYRVRQSNLCSEITLYTSFKRTAVCCLSSV 320 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLM 661 NL + +++ D L I VR LDNV++ + ++ +A S RAIGLG M Sbjct: 321 NLGTY---DEWKDDPL--FIADMVRFLDNVLEFFIRLAPPSMHRAVHSASKERAIGLGTM 375 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEF---ISFHAISASVELAQERGAYSSFKGSLWDQ 718 GF + L IP+ S + + + I A+ AS+EL + RG +GS Sbjct: 376 GFHTLLQQRMIPFESGGMGGMQQLNYQVYKQIKEQAVQASLELGRSRGEAPDCQGS---- 431 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G RNS+ +AIAP A +++ V Sbjct: 432 --------------------------------------GRRNSHLLAIAPNANSSSLVNV 453 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S S +P N + +G F + N +L EL++ L + + +GS +IE + Sbjct: 454 SPSTEPWAGNCFNAQGRAGSFLIKNEYLRRELEKVGLDTKETWRSINDAEGSCQHIEGLS 513 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D++K + T EI PMWLIE+A+ RQ +I Q+QS+NLY+ + + +++ I+ AW GL Sbjct: 514 DEVKAVFKTIREISPMWLIEAAAGRQPFICQSQSVNLYVHPDITLQEMSDIHIYAWHKGL 573 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 K+ YY RS++A S++ T G LNA+PV Sbjct: 574 KSLYYCRSKAAKSMKVGT--GGAEPLNALPV 602 >gi|312869728|ref|ZP_07729875.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus oris PB013-T2-3] gi|311094777|gb|EFQ53074.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus oris PB013-T2-3] Length = 723 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 173/657 (26%), Positives = 295/657 (44%), Gaps = 82/657 (12%) Query: 289 RDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F ++ Y +Y L + + + + RVAM E+ A++ + + Sbjct: 91 QDFHFHSFMAAYKFYAQYALRTDDKEYYL-ENYIDRVAMNALYLADGDEELAMDLADEII 149 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TPT N G R + SCF DD+ I + L+K GG+G + + Sbjct: 150 HQRYQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLSKIGGGVGINLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL + Sbjct: 210 LREAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YEN 524 K D++ R ++ +PD F + V ++A LFSP D+ +YGK F + Sbjct: 270 KENADEKIRLKTLSLGITVPDKFYELVEKDADMYLFSP---YDVERIYGKPFSYVDITKE 326 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ EI+ +K++A L ++ + E+G+P+I D N +P G + SNL Sbjct: 327 YDNLVANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRANPID--GKIVMSNL 383 Query: 585 CTEI--------TLNSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI + S ET CNLGS N+ N D ++R +R L Sbjct: 384 CSEIAQVQVPSKVADDQSYETLGTDISCNLGSTNIA-----NMMDSPDFGRSVRAMMRGL 438 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ++ D+ N + K+ N ++GLG MG S L HI Y SP A+E ++ Sbjct: 439 THISDVENLTVVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIEFTGVYFMLLN 498 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDELAMNRTSRLP- 745 + ++ AS E+A+ER + +F S + G + G ++V +L P Sbjct: 499 YWSLVASNEIAKERQETFHNFDKSSYADGSYFDKYTTKDWGPQSDVVKDLFHGIFIPGPA 558 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W LK++V G+ N +A+AP + + I + S+ P Sbjct: 559 DWAALKEKVMQDGLYNEYRLAVAPNGSTSYINDSTASLTP-------------------- 598 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 ++N +++R E MI + Y + N D + +A++ID +I++ + Q Sbjct: 599 -IINRVEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDIDMRKVIDTYAAAQ 648 Query: 865 KWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ+ SL L++ P G + L+ + A+ G+K+ YY+R+ Sbjct: 649 QHVDQSMSLTLFMRSTIPEGLYEWKNGRTNKMTTRDLNILRHYAYQKGIKSIYYIRT 705 >gi|301066518|ref|YP_003788541.1| ribonucleotide reductase subunit alpha [Lactobacillus casei str. Zhang] gi|300438925|gb|ADK18691.1| Ribonucleotide reductase, alpha subunit [Lactobacillus casei str. Zhang] Length = 723 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 162/609 (26%), Positives = 278/609 (45%), Gaps = 80/609 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E AV+ + + + +TP+ N+G R +L SCFL + DD+ I A+ L+ Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD + + NA LFSP V +Y Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVY 314 Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 GK F + Y+ IK + KI A L ++ + E+G+P+I D N +P Sbjct: 315 GKPFSYVDITKEYDNMVANPAIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373 Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 + G + SNLC+EI LN+ E + CNLGS N+ + F Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDF---- 427 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + + NH +IGLG MG + H+ Y SPE+ Sbjct: 428 -GRSVEAMVRALTYVTDHSNIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPES 486 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL- 736 ++ + ++++ + AS ++AQERG ++ +F+ S + D F + + A D++ Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVR 546 Query: 737 ----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 ++ ++ W+ LK V G+ + N MA+AP +I+ I S S+ P Sbjct: 547 ALFDGIHIPTQADWEALKISVMKDGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +VN ++ R E I + Y + N D + +A++ID Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPDLSN------DTMPYYQSAYDID 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896 +I+ + Q+ +DQ ++ L++ D+ + + L+ + A G Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKG 696 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 697 IKSIYYIRT 705 >gi|254173913|ref|ZP_04880584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Thermococcus sp. AM4] gi|214032162|gb|EEB72993.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Thermococcus sp. AM4] Length = 1361 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 144/554 (25%), Positives = 259/554 (46%), Gaps = 60/554 (10%) Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 EN M+ ++ GL +++ +R G + T G + G + F+ + + + + QGG R+GA Sbjct: 747 ENGMVFVHNTGL--NFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 804 Query: 449 CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 LE WH D+E+F+ + +NTG + +++ W + F + + + + L +P Sbjct: 805 MGILEVWHPDIEKFIHAKERNTGTNVLSNFNISVGIW--EDFWEALKEGKRYPLVNP--- 859 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 R ++ ++I +L+ ++ M + P + F D Sbjct: 860 -------------------RTGEK-----VKEIDPKSLFEELAFMAWSKADPGVIFFDVI 895 Query: 568 NIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYD 619 N R+ + G + ++N C E L E CNL SIN LA F FD+D Sbjct: 896 NRRNVLAEAKGGPIRATNPCGEEPLY----EYESCNLASIN-LAKFVKYDDEGKPYFDWD 950 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + A I+ + LDN ID+N + + + R IG+G+MG AL L IPY S E Sbjct: 951 EYAYVIQKVAKYLDNAIDVNRFPLPEIDHNTKLTRRIGVGMMGLADALFKLGIPYNSEEG 1010 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ E+++F+A SVE A++RG + ++ S + G P++ Sbjct: 1011 FAFMRKATEYLTFYAYKYSVEAAKKRGTFPLYEKSAYKDGELPVEG----------FYHR 1060 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 LPWDEL + +K G+RN PT +++ I S I+P + +Y KS G+F Sbjct: 1061 EIWTLPWDELVEEIKRHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 1120 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V+ +ELK+R LW + ++ + + GS+ +E IP+D++++ T+ ++ + I + Sbjct: 1121 YYVDPVFESELKKRGLWSDEILRKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILA 1180 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKS 914 + Q W+ + S + + ++ + + + Y A+ +G K R S + SVE Sbjct: 1181 QANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGE 1240 Query: 915 TLKGVDGKLNAVPV 928 K V K ++ V Sbjct: 1241 KRKRVPAKPSSYAV 1254 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 8/100 (8%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V G D + N + V R + Sbjct: 5 KVMKRDGRIVPFDRERIKWAIKRAMLEV---GVH-----DDKLLNRVVRRVVRRINELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 + HIE+IQD VE LM++G ++ + Y+LYR++++++R Sbjct: 57 GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIR 96 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E++ L++S FM +TP L NSG LS+CF+ + DD+ I A + AM+ K GG Sbjct: 243 EYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKSGGG 301 >gi|312973114|ref|ZP_07787287.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1827-70] gi|310333056|gb|EFQ00270.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1827-70] Length = 718 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 168/570 (29%), Positives = 268/570 (47%), Gaps = 43/570 (7%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +L+ DF + A+ + F F+ +LG Y Y L +G R + F RV Sbjct: 76 VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131 Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383 M L L + + E A++ + + S F +TPT N G + +L SCFL + D++ I Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFS Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310 Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F ++A + + E + ++A ++++ + FE+G+P+I Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 ++D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 424 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D A T+ TAVR L V D+ + ++ + N AIGLG M L Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726 I Y SPEA++ + I++HA+ S+ LA+ERG ++ FK S + G + + Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540 Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600 Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNE 809 SI P + + K +G F+ NE Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE 630 >gi|319891737|ref|YP_004148612.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161433|gb|ADV04976.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|323465094|gb|ADX77247.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus pseudintermedius ED99] Length = 701 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 199/731 (27%), Positives = 326/731 (44%), Gaps = 98/731 (13%) Query: 223 FLLEKLRREVLTTVYKKPQKATHH---EMQCLY----PEYFCRYIEEGVKARLLHESMMD 275 F LEK +E L + ++ Q T H E++ L+ ++ EE +A+L+ Sbjct: 27 FQLEK-DQEALASYLEEIQDKTVHFDSELERLHFLVDNHFYYNVFEEYSEAQLV------ 79 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKET 333 +L+ A ++ + FA Y+ + Y L N +E M V+ LA Sbjct: 80 -ELIAFATEIPFR--FA-SYMSASKFFKDYALKTNDKSQYLEDYHQHVMIVSFYLAKGNV 135 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 E K+ ++ + + +TPT N+G R +L SCFL V D L I Sbjct: 136 ELAKKLIQ---AMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQ 192 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + + +R G I G G ++GV+P K +Q G+R GA YL Sbjct: 193 LSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKALEGGFSYADQLGQRPGAGAVYL 252 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 +H DVEEFLD +K D+ R ++T +P F + + + +F+P V + Sbjct: 253 NIFHYDVEEFLDTKKINADEDLRLSTISTGLIVPSKFFELAKEGKDFFMFAPHTVEQEYG 312 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCN 568 + + I E Y+R + I K + R+ML M+ +T G+P++ FKD N Sbjct: 313 VTLDDINID-EYYDRLVENPNIMKKSKDA-----REMLNMIAQTQLQSGYPYLMFKDNAN 366 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------CNLGSINLLAHFAN 613 ++G + SNLCTEI +ET+V CNLGS+N++ + Sbjct: 367 RVHANSNIGQIKMSNLCTEIF---QLQETSVIHDYGVDDEIKRDISCNLGSLNIVNVMES 423 Query: 614 NQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 NQF ++ T + L V D N KK+N ++GLG+M L HI Sbjct: 424 NQF-----RDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNHI 478 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLL 729 Y S EA + AD +++++I S+++A+ERG + F S + G + S L Sbjct: 479 SYESEEAKDFADVFFMMMNYYSIERSMQIAKERGETFKDFDKSDYASGRYFERYTSEDFL 538 Query: 730 --AEVRDELAMNRT--SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +E L N T +R W L+ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 539 PKSEKVKALFANHTIPTRDDWKVLQAEVEKYGLYHAYRLAIAPTQSISYVQNATSSVMP- 597 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 +V+++++R + + + + + Sbjct: 598 --------------------IVDQIERRTYGNSETFYPMPF----------LSPQTMWYY 627 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 +AF ID M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R Sbjct: 628 KSAFNIDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTR 687 Query: 905 SRSATSVEKST 915 ++ SVE+ T Sbjct: 688 NK-LLSVEECT 697 >gi|83319418|ref|YP_424095.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283304|gb|ABC01236.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 720 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 170/661 (25%), Positives = 292/661 (44%), Gaps = 69/661 (10%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 FD + ND Y + F ++G ++ Y L + + + + + RV M Sbjct: 82 FDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETYTDRVLMNALFLGNG 140 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAML 393 +A + F +TPT N+ +H + SC+L D++ I + + L Sbjct: 141 NFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQL 200 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ T +R G+ I +G S G IP +K+ D+ +Q G+R+GA Y+ Sbjct: 201 SKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYIS 260 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ LD ++ D++ R ++ IPD+ + N LFSP D+ + Sbjct: 261 AHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKV 317 Query: 514 YGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 YGK + I + YE + K + ISA + + + FE+G+P+I F+D N R Sbjct: 318 YGKPLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRR 375 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDY 618 + G + SNLC+EI S++ E + CNLGS+N+ + + Sbjct: 376 NAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCNLGSLNIDKMMKSGK--- 432 Query: 619 DKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + + +I A+ LD V + + KK N + A+GLG M L I Y SP Sbjct: 433 -EFSDSIYNAISALDIVSRNSDLSASPSIKKGNAENHAVGLGAMNLHGFLATNKIMYDSP 491 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726 EAV+ + ++++A AS +LAQE ++SF S + G + Sbjct: 492 EAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQT 551 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + E+ + + S+ W EL + +K G+ NS+ MA+APT +I+ + + S+ P Sbjct: 552 NRVKELFKDYDVQIPSQTDWIELVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVV 611 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + V+ V ++ +N ++ Y+ ++G E PD + I A Sbjct: 612 STVEVRKEGKLGRVYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVA 657 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A Q+ +DQA SL L++ D+ + + L+ Y A+ G + YY+R Sbjct: 658 AA---------------QQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRI 702 Query: 906 R 906 R Sbjct: 703 R 703 >gi|66957898|gb|AAQ73541.2| ribonucleotide reductase large subunit [Tortoise herpesvirus] Length = 796 Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 174/621 (28%), Positives = 272/621 (43%), Gaps = 82/621 (13%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD--LYGIFGALQENAMLAKYSGG 399 F+NLLS + TP + G ++ L+SC+L P L + Q+ + + GG Sbjct: 188 FFNLLSHNIIIPPTPAMLFMGRKNRSLASCYLLDPPQKTTLEAMSAVAQDIIPILNHRGG 247 Query: 400 LG---NDW--TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 +G ND+ TP G+ G + K+ + + N +R VC ++E Sbjct: 248 IGINVNDYNQTP----------REGRKLGFLGLAKLIDTCVLLSNSDSERPTGVCMFMEP 297 Query: 455 WHIDVEEFLDLRK-NTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSDLH 511 W+ DVE FL ++ T + R ++ A WIPDLFMKR N W+LF D + L Sbjct: 298 WNADVESFLGIKGLTTLEHHLRCDNIFNALWIPDLFMKRYMADPNTTWSLFD-DRCNHLA 356 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 LYGKEFE Y E R++ L K++ TG P+I FKD CN Sbjct: 357 KLYGKEFEDEYHRLETAG-----MAVRQMPIKELLFKIIRSAIMTGSPFIMFKDSCNRHY 411 Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------------------- 611 G + SNLCTEI ++ + VCNL ++NL A Sbjct: 412 YMDTQGQAIRGSNLCTEIIHHTEPDSDGVCNLMNVNLPAFLTLSFNKETYCLSDDTLWQE 471 Query: 612 --------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + F+++KL + A ++ +ID + H K + R++G+G G Sbjct: 472 HNKFCTPGGHRYFNFEKLTEAVTAATIFINVMIDRSVHPTTKTQNGAKNFRSMGIGFQGL 531 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFP 722 + +L +P+A ++ E + A AS EL Q + F S + +G+ Sbjct: 532 NTLCWILGETLVTPKARKLGKTICEAMYLSAAEASNELCQLGLSPFKRFSESRYARGIMH 591 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ + + T + W L+ ++ G+ NS +A+ PT + + I S++ Sbjct: 592 FDAWDNVGSL--------TFQDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAF 643 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIP 838 P + NLY K +++G+ N L+ +L K +D D + L+ H +G E P Sbjct: 644 YPVFTNLYSKLSVNGETVKPNVMLLRDLGSVFKGKDYTDA--LEKLERHKWVVG--EAFP 699 Query: 839 DDLKKIHA-----TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----SGKKLDFIY 889 DL HA TAFE D L+E + R ++D +QS LY E S K + Sbjct: 700 -DLPTDHAIRKYLTAFEYDQNTLLELTADRAPFVDHSQSNTLYFLEGKTPISAKYIMNHL 758 Query: 890 RQAWLMGLKT-TYYLRSRSAT 909 A+ +GLKT YY R + AT Sbjct: 759 VTAYKLGLKTGMYYCRIKKAT 779 >gi|12045086|ref|NP_072897.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma genitalium G37] gi|255660232|ref|ZP_05405641.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma genitalium G37] gi|1350599|sp|P47473|RIR1_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|3844834|gb|AAC71452.1| ribonucleoside-diphosphate reductase, alpha chain [Mycoplasma genitalium G37] gi|166078758|gb|ABY79376.1| ribonucleoside-diphosphate reductase, alpha chain [synthetic Mycoplasma genitalium JCVI-1.0] Length = 721 Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 170/623 (27%), Positives = 279/623 (44%), Gaps = 89/623 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381 RV M + + +A++ + F +TPT N+G + + SC+L + D++ Sbjct: 127 RVVMNVLMLANGNFNKALKLLKQIILNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNME 186 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A+ L+K GG+ + +R GA I +S G+IP +K+ D+ NQ Sbjct: 187 SIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKIENQSSGIIPIMKLLEDSFSYSNQL 246 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R+GA YL H DV +FLD ++ D++ R ++ IPD+ + N L Sbjct: 247 GQRQGAGAVYLHCHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFQLAKNNEMMAL 306 Query: 502 FSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 FSP D++ YGK E+ YE E Q + K F ISA ++ + + FE Sbjct: 307 FSP---YDIYQEYGKALSDISVTEMYYELLENQRIK---KTF--ISARKFFQTIAELHFE 358 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLG 603 +G+P+I F D N R+ H + SNLC+EI S E CNLG Sbjct: 359 SGYPYILFDDTVNRRNA--HKNRIVMSNLCSEIVQPSLPSEFYSDLTFKKVGSDISCNLG 416 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMG 662 S+N+ + +LA I+ A+ LD V I+ T KK N + A+GLG M Sbjct: 417 SLNIARAMESGS----ELAELIQLAIESLDLVSRISSLETAPSIKKGNSENHALGLGAMN 472 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L I Y S EAV+ + +++HA SAS +LA E G + F+ + + G + Sbjct: 473 LHGFLATNAIYYDSKEAVDFTNIFFYTVAYHAFSASNKLALELGKFKDFENTKFADGSY- 531 Query: 723 IDSIGLLAE------------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 D +A + D+ + ++ W +L ++ G+ NS+ MAIAPT Sbjct: 532 FDKYTKVASDFWTCKTEKVQALFDKYQVKIPTQENWKQLVASIQKDGLANSHLMAIAPTG 591 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ + + S+ P +V+ ++ R +G Sbjct: 592 SISYLSSCTPSLQP---------------------VVSPVEVR-------------KEGK 617 Query: 831 IGNIERIP------DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 +G I +P D+ + A+E+ +I + Q+ +DQA SL L++ D+ + + Sbjct: 618 LGRI-YVPAYKLDNDNYQYFKDGAYELGFEPIINIVAAAQQHVDQAISLTLFMTDKATTR 676 Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906 L+ Y A+ G + YY+R R Sbjct: 677 DLNKAYIYAFKKGCSSIYYVRVR 699 >gi|26553538|ref|NP_757472.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma penetrans HF-2] gi|26453544|dbj|BAC43876.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma penetrans HF-2] Length = 725 Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 166/610 (27%), Positives = 283/610 (46%), Gaps = 87/610 (14%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E+ A+ + + + + + +TPT N+G + + SC+L V D++ I A L+ Sbjct: 146 EQDALTYLDEMMTGRYQAATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRATTTGLQLS 205 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+ T +R GA I G ++ G+IP +K+ D NQ G+R+GA YL Sbjct: 206 KRGGGVAYCLTNLREFGAPIKGIKNQATGIIPVMKILEDVFSYANQLGQRQGAGAVYLNA 265 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ +FLD ++ D++ R ++ +PD+ +N LFSP D+ Y Sbjct: 266 FHPDILKFLDSKRENADEKIRIKSLSLGVVVPDIAFHLARENKDMALFSP---YDIQREY 322 Query: 515 GK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 GK + I E YE + I + ISA L++++ + FE+G+P+I F D N ++ Sbjct: 323 GKPMSDISIT-EEYENLLNNPNITK-KYISARKLFQQIAEVQFESGYPFILFDDIANEKN 380 Query: 572 PQQHVGVVHSSNLCTEIT-LNSSS-----------EETAVCNLGSINLLAHFANNQFDYD 619 + ++ SNLCTEIT +N+ S E CNLGS+N+ A D Sbjct: 381 SALNNRIIM-SNLCTEITQINTPSILNTDLTYEQLGEDVCCNLGSLNI----AKVMEDGA 435 Query: 620 KLASTIRTAVRVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 T++ A++ LD++ + + TIE N +RA+GLG M L I Y Sbjct: 436 NFGKTVKYAIKALDSIAHLADLSSAPTIENG---NSKNRAVGLGAMNLHGFLATNKIYYD 492 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQGV-----FPI 723 S EAV+ + +++HA AS E A+E G + +FK GS +D+ + Sbjct: 493 SEEAVDFTNMFFYTMAYHAYKASNETAKETGFVFENFKNTKYADGSYFDKYTQCEENYWT 552 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E+ E + ++ W +L + +K G+ NS+ MA+APT +I+ + + S+ Sbjct: 553 PKTERVKELLKEYKLAIPTKQDWIQLTEDIKKFGLANSHLMAVAPTGSISYLSSCTPSLQ 612 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP----- 838 P +V+ ++ R +G +G + +P Sbjct: 613 P---------------------IVSPIEIR-------------KEGKVGRV-YVPAYKID 637 Query: 839 -DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896 ++ A+EI +I+ S Q+ +DQA S+ L+L E + + L+ Y A+ Sbjct: 638 VNNYMYYAKGAYEIGVNPIIDICSAAQQHVDQAISMTLFLTENATTRDLNKAYIYAFNKK 697 Query: 897 LKTTYYLRSR 906 + YY+R R Sbjct: 698 CVSIYYIRIR 707 >gi|154686151|ref|YP_001421312.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus amyloliquefaciens FZB42] gi|154352002|gb|ABS74081.1| NrdE [Bacillus amyloliquefaciens FZB42] Length = 700 Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 175/658 (26%), Positives = 291/658 (44%), Gaps = 92/658 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F ++ Y+ Y L N + +E + VA+ A +TEK K E+ Sbjct: 85 YAKKFRFPSFMSAFKFYNDYALKTNDKKRILERYEDRISIVALFFANGDTEKAK---EYV 141 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 NL+ + + STPT N+G R +L SCFL V D L I A+ + L+K GG+ Sbjct: 142 NLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +F Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K + D+ R ++ IPD F++ ++ +F P + + + E ++ Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMT- 320 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE D +K K++A L K+ + E+G+P+I F+D N HV V S Sbjct: 321 AMYEELVDNPRVKK-EKVNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFS 379 Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+E+ S EE + CNLGS+N+L N + + T++ A Sbjct: 380 NLCSEVLQASQVSAYTDYDEEDEIGLDISCNLGSLNIL-----NVMKHKSIERTVKLATD 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L +V + + +++N ++IGLG M L I Y SPEA + A+ Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737 ++F++I S ELA+E+G + ++GS + G + + I L E Sbjct: 495 VNFYSIQRSAELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFE-----G 549 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789 M+ + W ELK V GM +S + IAPT +I+ + + S+ P +Y N Sbjct: 550 MHIPTIEDWKELKAFVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 M G N F E A+ Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++D +++ + Q+ IDQ S L+L D + + L+ I A G+KT YY R++ Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|304398690|ref|ZP_07380562.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] gi|304353901|gb|EFM18276.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] Length = 712 Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 182/663 (27%), Positives = 301/663 (45%), Gaps = 77/663 (11%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331 DFD + +++ + F F+ +LG Y Y L +G R +E + VA+ LA Sbjct: 79 DFDFLLELHEVAEKWGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVALTLAQG 138 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390 + + +E +LS F +TPT N G + +L SCFL + D++ I A+ Sbjct: 139 DETLARALLE--EILSG-RFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSA 195 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Sbjct: 196 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 255 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 +L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 256 WLNAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENRPMALFSP---YDV 312 Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +YG+ F I+ + E AD K + I ++ + + FE+G+P+I ++D Sbjct: 313 ERIYGQAFGDISISEKYDEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 370 Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615 N +P G ++ SNLC+EI +NS+SE + CNLGS+N +AH Sbjct: 371 NRSNPI--AGRINMSNLCSEILQVNSASEYHDDLSYRRIGKDISCNLGSLN-IAH----A 423 Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D LA T+ AVR L +V ++ ++ + N AIGLG M L I Y Sbjct: 424 MDSRDLARTVDVAVRALTSVSMMSEIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGIAY 483 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDS 725 SPEA++ + I+++A+ S +LAQE + + F S + GV+ + Sbjct: 484 GSPEALDFTNLYFYCITYYALRTSNQLAQEHQKTFEGFADSQYASGVYFDKYLQREWLPR 543 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + + + ++ W L+ V G+ N N AI PT +I+ I + SI P Sbjct: 544 TERVTTLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPI 603 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + K +G F+ NE N+ + Sbjct: 604 VSPIEIRKEGKTGRVYYPAPFMTNE-----------------------NLH--------L 632 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+ Sbjct: 633 YQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692 Query: 904 RSR 906 R R Sbjct: 693 RLR 695 >gi|327409754|ref|YP_004347174.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus] gi|326784928|gb|AEA07062.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus] Length = 1027 Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 169/308 (54%), Gaps = 24/308 (7%) Query: 288 ERDFAFEYLGLQILYDRYF---------LHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 ERD F+++ + L Y LH+N E PQ ++RVA L + + + K+ Sbjct: 110 ERDMKFDWMAVSTLEKSYLVKRKGYDGNLHLN----ERPQQLYLRVATFLCMPDMKNIKK 165 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 +YN LS F ++PTLFN+G + +LSSCFL VPD L + + A ++ SG Sbjct: 166 ---YYNCLSKGKFTMASPTLFNAGLKKFKLSSCFLGIVPDSLNKMAQVWADIAAISSGSG 222 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G TPVR + I G G+S G + FL+V N V+Q G+RKG+ +L WH+D Sbjct: 223 GVGYSVTPVRH--SDIGGL-GQSSGAVSFLRVPNAVLGYVDQAGRRKGSGTFFLACWHVD 279 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +F+D +K GDD R ++ A W DLFMKRV N W+LF P+E L D+YG EF Sbjct: 280 IFDFVDAKKPGGDDLMRAREIFYAIWTSDLFMKRVKDNGDWSLFCPNEAPGLDDVYGSEF 339 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E YE YE++ ++ + A LW +L E G P+I +KD +S Q++ G+ Sbjct: 340 ETLYERYEKEGRAKKV-----VKAQELWHHILVAQVEVGMPFIAYKDAICRKSNQKNFGM 394 Query: 579 VHSSNLCT 586 HS NLC Sbjct: 395 PHSLNLCV 402 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/364 (27%), Positives = 173/364 (47%), Gaps = 48/364 (13%) Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 C EI N+S +E A CNL SI L + ++ KL R +R+L+NV+D NC+ Sbjct: 646 CMEICQNTSEDEIASCNLASICLPEYVDKKTGAYNLKKLWRNARKVIRILNNVVDRNCYP 705 Query: 643 --IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 I K K++N HR IGLG+ G ++ + + EA + + E I AI+ S + Sbjct: 706 PEIPKIKRTNLRHRPIGLGVQGLADVFAIMGLSWLDEEAKMLNRQIFETIYHAAITESRK 765 Query: 701 LAQERGA-------YSSFKGSLWDQGVF----------------PIDSIGLLAEVRDELA 737 +++ER Y +F GS +G F P D I + +++ Sbjct: 766 MSKERARFGCAVPYYETFPGSPLSKGFFSHDLWDVENIHKKTGIPFDDITI-----EQVK 820 Query: 738 MNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +R +R + WD +++ + G+ NS +A+ PTA+ A I +++ +P + Sbjct: 821 EHRKARGIPESYCGIDWDSERRKTQRDGVYNSFMIALMPTASTAQILRNNEAFEPFTNII 880 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI- 844 ++ +SG F +VN V+++ + +W++ + GS+ I + D ++KI Sbjct: 881 GKRTVLSGTFAIVNKHFVDDMIELGIWNKKNRAICLTGKGSVQGIVCEDPSLADAVEKIK 940 Query: 845 --HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 + AFE+ + E R +++DQ S N ++ P+ +KL + W G KT Y Sbjct: 941 RKYLNAFELSQKRVCELGIDRSRYVDQTSSHNCFMKNPTYQKLTSYHFYQWEEGAKTGMY 1000 Query: 902 YLRS 905 YLR+ Sbjct: 1001 YLRT 1004 >gi|297622358|ref|YP_003703792.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera radiovictrix DSM 17093] gi|297163538|gb|ADI13249.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera radiovictrix DSM 17093] Length = 554 Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 166/582 (28%), Positives = 254/582 (43%), Gaps = 106/582 (18%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A F++ L+ + S+P N G SCF + VPD + GI GA E +++KY G Sbjct: 53 AERFFDYLARGFYSLSSPIWANFGLSRGLPISCFGSYVPDSMAGILGAAAEVGIMSKYGG 112 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G + +R GA I NG S+G + FL++ + QG R+G+ AYL H D Sbjct: 113 GTSAYFGDLRPRGAPIR-DNGFSEGAVNFLRLFDTLIDVTKQGATRRGSFAAYLPIDHPD 171 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 VEEFL +R + N I +LF +G Sbjct: 172 VEEFLAIRSD-------------GNPIQNLF------------------------FGVAV 194 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577 A+ R D + +V W K+L E G P++ F D +P+ + Sbjct: 195 SDAWLEAMRAGDADKRRV---------WAKVLQKRTEVGLPYVLFTDNATRGAPEVYRDR 245 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 VV SSNLCTEI L + +E+ VC+L S+NL +D + +R V LD V Sbjct: 246 GLVVRSSNLCTEIMLPVAEDESFVCDLASMNL------ATYDAWRATDAVRLLVFFLDAV 299 Query: 636 I------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + + E+A++ HRA+G+G++G+ S L +P+ S +A + + Sbjct: 300 MTEFIDKSASLPFFERARRFAVRHRALGVGVVGYHSLLQARRVPFGSLQAALLNRQIFRE 359 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A AS ELA+ G + +G+ Sbjct: 360 LREAADDASAELARRYGEPALCEGT----------------------------------- 384 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN+ +A+APT + A I G VS S++P N YV+ T N L Sbjct: 385 -------GRRNTTLLAVAPTTSSAFILGGVSPSVEPLRSNYYVRDLAKAVVTYRNPALRE 437 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L++R A+ + HDGS+ +++ + D+ K + AT EI P +I A+ RQ +ID Sbjct: 438 VLRERGHDTPAVWRSILAHDGSVQHLDCLSDEEKGVFATFSEISPRDIIVQAAGRQAFID 497 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 Q QSLNL + E + L+ + +A GLK+ YY + SA Sbjct: 498 QGQSLNLMIHPETPARDLNALVLEAHARGLKSLYYQHAISAA 539 >gi|319948550|ref|ZP_08022681.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia cinnamea P4] gi|319437797|gb|EFV92786.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia cinnamea P4] Length = 693 Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 183/673 (27%), Positives = 301/673 (44%), Gaps = 92/673 (13%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + VA+ LA + E A Sbjct: 69 DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAGD---ETLAR 125 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 126 QLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLSNLREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 +FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F Sbjct: 246 YKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERIYGKPFA 302 Query: 519 --EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 +I+ NY + IK KI+A ++ + + FE+G+P+I ++D N +P Sbjct: 303 DVDIS-ANYHEMVEDSRIKK-TKINARHFFQTVAELQFESGYPYIMYEDTVNRANPI--A 358 Query: 577 GVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLAST 624 G + SNLC+EI S++ E CNLGS+N+ D T Sbjct: 359 GKITHSNLCSEILQVSTASEFNEDLTYSHVGKDISCNLGSLNIA-----KAMDSPDFGRT 413 Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 I TA+R L V D + +++ ++ N AIGLG M L I Y S E ++ Sbjct: 414 IETAIRGLTAVSDQTHINSVPSIERGNSESHAIGLGQMNLHGYLARERIHYGSEEGIDFT 473 Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSI-GLLA 730 + + +HA+ +S +A+ERG ++ F S + G F D + L A Sbjct: 474 NIYFYTVLYHALRSSNLIARERGTWFAGFPESKYASGEFFDKYTDQTWEPATDRVRQLFA 533 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E E+A+ ++ W LK V+ G+ N N A+ PT +I+ I + SI P + Sbjct: 534 EA--EVAI--PTQEDWRALKADVQKYGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIE 589 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHA 846 ++ +G IG + + +D + Sbjct: 590 IRK----------------------------------EGKIGRVYYPAPYLTNDNLDYYQ 615 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI +I++ + + +DQ SL L+ D + ++++ AW G+KT YY+R Sbjct: 616 DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTREVNRAQIYAWRKGIKTLYYIRV 675 Query: 906 RSATSVEKSTLKG 918 R ++E + ++G Sbjct: 676 RQ-LALEGTEVEG 687 >gi|317052120|ref|YP_004113236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurispirillum indicum S5] gi|316947204|gb|ADU66680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurispirillum indicum S5] Length = 725 Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 166/618 (26%), Positives = 270/618 (43%), Gaps = 82/618 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCST 355 +L RY+L G +E + RVA +AL + E E+ F++L+ S F+ ++ Sbjct: 17 VLQRRYYLKDAQGHPVENWEKLCRRVANAVALPDRELDDYEEVRDHFFSLIYSLDFLPNS 76 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 P L N+GT QLS+CF+ V D + GIF A++ A++ K GG G ++ +R A + Sbjct: 77 PCLMNAGTGIGQLSACFVLPVEDSMEGIFTAVKNGALVHKTGGGTGYSFSRLRPRNATVS 136 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T G + G + F V + + QGGKR+GA + H D+ +F+ + +D+ R Sbjct: 137 STQGVASGPLSFAAVFDVATETIKQGGKRRGANMGVMRVDHPDIMDFICAK----EDQTR 192 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ N + I D FM+ + + L P KE Sbjct: 193 FNNFNFSVAITDEFMQALYDEREYALVDP---------VTKE------------------ 225 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 + ++A ++ K++ + + G P + F D N +P +G ++N C E L Sbjct: 226 IVSSLNARTVFDKIVDLAWHNGEPGVLFIDAANRANPTPQLGEFEATNPCGEQWLLPYES 285 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNLGSINL + DYD+LA T R A R LDNVID N I + K+ R Sbjct: 286 ----CNLGSINLGNFVEGGRVDYDRLARTTRLATRFLDNVIDCNVFPIPEIKEMTMKTRK 341 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L + + YAS E ++ E M++I + S+ELA+ +G + +F Sbjct: 342 IGLGIMGMHDMLIQMGLSYASNEGRKLCAEVMKYIRTISEETSIELAKVKGPFPAF---- 397 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D T R RN+ +I PT T++ I Sbjct: 398 ------------------DPAINTYTPR---------------RNAALTSIQPTGTVSMI 424 Query: 776 CGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + +P + + VK M GD +VN + + +++ + G++ Sbjct: 425 ADCASGCEPYFSIVMVKHVMDGDKLLMVNKHFEEIARAEGFYSTELMARVA-DSGTVVGH 483 Query: 835 ERIPDDLKKIHATAFEIDPMWLIE-SASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQA 892 E IP ++I TA +I P I+ +Q +D + S + + + K+ + Y Sbjct: 484 EEIPVKWQEIFCTAQDITPSDHIQMQGILQQSGVDSSISKTINMPNTATKEDVRLAYLMG 543 Query: 893 WLMGLK--TTYYLRSRSA 908 + MG K T Y SR Sbjct: 544 YEMGCKGLTVYRDGSRDG 561 >gi|262165763|ref|ZP_06033500.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus VM223] gi|262025479|gb|EEY44147.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus VM223] Length = 722 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 161/610 (26%), Positives = 276/610 (45%), Gaps = 67/610 (10%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381 RV M E A++ + S F +TPT N+G + +L SCFL + D++ Sbjct: 137 RVVMTALTLARGDEAFAMQLMREILSGRFQPATPTFINAGKKSRGELISCFLLRIEDNME 196 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A+ + L++ GG+ + +R GA I +S GVIP +K+ D+ NQ Sbjct: 197 SIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMKLLEDSFSYANQL 256 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+GA YL H D+ FLD ++ D++ R ++ +PD+ + +N L Sbjct: 257 GARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDITFELAKKNKEMYL 316 Query: 502 FSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 FSP D+ +YG F +I+ E Y+ + EI+ KI+A L++ + + FE+G+P Sbjct: 317 FSP---YDVERVYGVPFADISVNEKYDEMVENAEIRK-TKINARELFQTIAEIQFESGYP 372 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINL 607 ++ F+D N +P G + SNLC+EI S + + CNLGS+N+ Sbjct: 373 YLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQYLGTDISCNLGSLNI 430 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666 D L ++ AVR L V +++ ++ +K N AIGLG M Sbjct: 431 A-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQSHAIGLGQMNLHGF 485 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725 L I Y S E ++ + I+FH + AS ++A+E+ + F+ S + G + Sbjct: 486 LAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDFERSRYASGEYFTPY 545 Query: 726 IG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + ++ + + A+ ++ W +LK+ V G+ N N A+ PT +I+ I Sbjct: 546 LQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNLQAVPPTGSISYINY 605 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ E + + Y + N Sbjct: 606 STSSIHPITAKIEIRK------------------------EGQVGRVYYPAPYMTN---- 637 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896 D+L + A+EI P +I++ + + +DQ SL L+ + + ++ AW G Sbjct: 638 -DNL-NYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASATTRDINKAQIYAWKKG 695 Query: 897 LKTTYYLRSR 906 +KT YY+R R Sbjct: 696 IKTLYYVRLR 705 >gi|328957626|ref|YP_004375012.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] gi|328673950|gb|AEB29996.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] Length = 725 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 191/702 (27%), Positives = 315/702 (44%), Gaps = 104/702 (14%) Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFE-YLGLQILYDRYFLHIN-GSR 313 YIEE E ++ +D + L +D+ Y R F F ++ Y +Y L N G R Sbjct: 69 YIEE--------EFLLKYDRAFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTNDGER 119 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSS 370 +E + + A+ LA +TE R A E N + +TPT N+G R +L S Sbjct: 120 FLERYEDRIVFNALYLADGDTELASRLADEIVNQ----RYQPATPTFLNAGRKRRGELVS 175 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL DD+ I + L++ GG+G + + +R G I + S GV+P +K+ Sbjct: 176 CFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVMKL 235 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G+R GA YL +H D+ FL +K D++ R ++ +PD F Sbjct: 236 LEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDKFY 295 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----ENYERQADRGEIKVFRKISAVALW 546 + + LFSP D+ +YG+ F AY + Y+ + EI+ KISA L Sbjct: 296 ELAAHDEQMYLFSP---YDVERIYGEPF--AYIDITKEYDNMVNNEEIRK-SKISARELE 349 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEE-- 596 ++ + E+G+P+I D N +P G + SNLC+EI N + E Sbjct: 350 NEISKLQQESGYPYIINVDTANRENPV--YGTITMSNLCSEILQVQEPSLINNDQTYEHL 407 Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTH 653 CNLGS N++ ++ F ++I T VR L V D + + K N + Sbjct: 408 GTDISCNLGSTNIVNLMKSSDF-----GNSIDTMVRALTMVTDQSSIDAVPSIKNGNDKY 462 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK 712 IGLG MG + L L I Y SPE+VE D + ++++ + +S ++A+ER + +F+ Sbjct: 463 HTIGLGAMGLHTYLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERNTTFYNFE 522 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTS--RLP----WDELKKRVKTIGMRNSNCMAI 766 S + G + I E + ++P W LK+ V G+ + N +A+ Sbjct: 523 KSSYANGTYFDKYINENFVFSSEKVQHLFDGIQVPTIEDWAALKEAVMRDGLYHQNRLAV 582 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + S S+ P + L+ E +++ + Y Sbjct: 583 APTGSISYVNETSSSLHPITR------------------LIEERQEKK-------TGKTY 617 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG-- 882 + + +D + +A+++D +I+ + QK IDQ SL L+L + P G Sbjct: 618 YPAPF-----LSNDTMPYYTSAYDMDMRKVIDVYAAAQKHIDQGMSLTLFLRSEIPEGLY 672 Query: 883 ------------KKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + L+ + AW G+K+ YY+R+ + S E Sbjct: 673 EWKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRTFTENSEE 714 >gi|300859088|ref|YP_003784071.1| ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium pseudotuberculosis FRC41] gi|300686542|gb|ADK29464.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium pseudotuberculosis FRC41] gi|302206795|gb|ADL11137.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium pseudotuberculosis C231] gi|302331349|gb|ADL21543.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium pseudotuberculosis 1002] gi|308277041|gb|ADO26940.1| Ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium pseudotuberculosis I19] Length = 719 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 179/652 (27%), Positives = 293/652 (44%), Gaps = 79/652 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYN 344 Y F F+ +LG Y Y L R + + F RV M L L + + + A + Sbjct: 98 YAHKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCMVALTLADGD-QNLARNLVD 155 Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 156 EIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALL 215 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FL Sbjct: 216 LSNLREAGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNFL 275 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522 D ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F +I+ Sbjct: 276 DTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKAFADISV 332 Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E+Y + I+ KI+A ++ + + FE+G+P+I F+D N +P + G V+ Sbjct: 333 SEHYAEMVEDPRIRK-SKINAREFFQTIAEIQFESGYPYIMFEDTVNKANPIE--GRVNM 389 Query: 582 SNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI +N+ S E CNLGS+N+ D A TI TA+ Sbjct: 390 SNLCSEILQVNTPSLFNDDLTYEEVGEDISCNLGSLNIAM-----TMDSPDFAKTIETAI 444 Query: 630 RVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V + +++ +K N AIGLG M L HI Y S E ++ + Sbjct: 445 RGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFA 504 Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID---SIGLLAEVRDELAMN 739 + + + AS +LA+ERG + F+ S + G + P D +A++ + ++ Sbjct: 505 AVLYQCLVASNKLARERGRTFVGFETSKYATGEYFDGFDPADFAPKTEKVAKIFADSSIY 564 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W +LK V G+ N A+ PT +I+ I + SI P + ++ Sbjct: 565 TPTAADWADLKDSVAAHGLYNRYLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 618 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMW 855 +G IG + + ++ A A+EI Sbjct: 619 ----------------------------EGKIGRVYYPAPHMDNENLDYFADAYEIGFEK 650 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I++ + K++DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 651 VIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIYAWRKGIKTLYYIRLR 702 >gi|163791217|ref|ZP_02185633.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium sp. AT7] gi|159873487|gb|EDP67575.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium sp. AT7] Length = 727 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 189/701 (26%), Positives = 315/701 (44%), Gaps = 102/701 (14%) Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFE-YLGLQILYDRYFLHIN-GSR 313 YIEE E ++ +D + L +D+ Y R F F ++ Y +Y L N G R Sbjct: 71 YIEE--------EFLLKYDREFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTNDGER 121 Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSC 371 +E + + A+ LA +T K A + + + + +TPT N+G R +L SC Sbjct: 122 FLERYEDRIVFNALYLADGDT---KLASRLADEIVNQRYQPATPTFLNAGRKRRGELVSC 178 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL DD+ I + L++ GG+G + + +R G I + S GV+P +K+ Sbjct: 179 FLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVMKLL 238 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G+R GA YL +H D+ FL +K D++ R ++ +PD F + Sbjct: 239 EDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDKFYE 298 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----ENYERQADRGEIKVFRKISAVALWR 547 + LFSP D+ +YG+ F AY + Y+ + EI+ KISA L Sbjct: 299 LAAHDEQMYLFSP---YDVERIYGEPF--AYIDITKEYDNMVNNEEIRK-SKISARELEN 352 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEE--- 596 ++ + E+G+P+I D N +P G + SNLC+EI N + E Sbjct: 353 EISKLQQESGYPYIINVDTANRENPV--YGTITMSNLCSEILQIQEPSLINNDQTYEHLG 410 Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654 CNLGS N++ + F +I T VR L V D + + K N + Sbjct: 411 TDISCNLGSTNIVNLMKSPNF-----GQSIDTMVRALTMVTDQSSIDAVPSIKNGNDRYH 465 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713 IGLG MG + L L I Y SPE+VE D + ++++ + +S ++A+ERG + +F+ Sbjct: 466 TIGLGAMGLHTFLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERGTTFYNFEK 525 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTS--RLP----WDELKKRVKTIGMRNSNCMAIA 767 S + G + I E + ++P W LK+ V + G+ + N +A+A Sbjct: 526 SKYANGTYFDKYINENFVFSSEKVQHLFDGIQVPTIEDWAALKEAVMSDGLYHQNRLAVA 585 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ + S S+ P + L+ E +++ + Y+ Sbjct: 586 PTGSISYVNETSSSLHPITR------------------LIEERQEKK-------TGKTYY 620 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG--- 882 + +D + +A+++D +I+ + QK IDQ SL L+L + P G Sbjct: 621 PAPF-----LSNDTMPYYKSAYDMDMRQVIDVYAAAQKHIDQGMSLTLFLRSEIPEGLYE 675 Query: 883 -----------KKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + L+ + AW G+K+ YY+R+ + S E Sbjct: 676 WKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRTFTENSEE 716 >gi|262171414|ref|ZP_06039092.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus MB-451] gi|261892490|gb|EEY38476.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus MB-451] Length = 722 Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 161/610 (26%), Positives = 276/610 (45%), Gaps = 67/610 (10%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381 RV M E A++ + S F +TPT N+G + +L SCFL + D++ Sbjct: 137 RVVMTALTLARGDEAFAMQLMREILSGRFQPATPTFINAGKKSRGELISCFLLRIEDNME 196 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A+ + L++ GG+ + +R GA I +S GVIP +K+ D+ NQ Sbjct: 197 SIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMKLLEDSFSYANQL 256 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+GA YL H D+ FLD ++ D++ R ++ +PD+ + +N L Sbjct: 257 GARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDITFELAKKNKEMYL 316 Query: 502 FSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 FSP D+ +YG F +I+ E Y+ + EI+ KI+A L++ + + FE+G+P Sbjct: 317 FSP---YDVERVYGVPFADISVNEKYDEMVENAEIRK-TKINARELFQTIAEIQFESGYP 372 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINL 607 ++ F+D N +P G + SNLC+EI S + + CNLGS+N+ Sbjct: 373 YLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQHLGTDISCNLGSLNI 430 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666 D L ++ AVR L V +++ ++ +K N AIGLG M Sbjct: 431 A-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQSHAIGLGQMNLHGF 485 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725 L I Y S E ++ + I+FH + AS ++A+E+ + F+ S + G + Sbjct: 486 LAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDFERSRYASGEYFTPY 545 Query: 726 IG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + ++ + + A+ ++ W +LK+ V G+ N N A+ PT +I+ I Sbjct: 546 LQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNLQAVPPTGSISYINY 605 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ E + + Y + N Sbjct: 606 STSSIHPITAKIEIRK------------------------EGQVGRVYYPAPYMTN---- 637 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896 D+L + A+EI P +I++ + + +DQ SL L+ + + ++ AW G Sbjct: 638 -DNL-NYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASATTRDINKAQIYAWKKG 695 Query: 897 LKTTYYLRSR 906 +KT YY+R R Sbjct: 696 IKTLYYVRLR 705 >gi|220916577|ref|YP_002491881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter dehalogenans 2CP-1] gi|219954431|gb|ACL64815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter dehalogenans 2CP-1] Length = 595 Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 171/613 (27%), Positives = 269/613 (43%), Gaps = 76/613 (12%) Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCST 355 +L RY L G + IE P+A F RVA +A E + A F +++ + ++ Sbjct: 10 HVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEHPAARALWAERFEARMAALELLPNS 69 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R G + Sbjct: 70 PTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRPRGDVVK 129 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T+G + G + F++V + + QGG R+GA A L H DV EF+D ++ G Sbjct: 130 TTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAAG----- 184 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 + N + PD ++ GW L P RG Sbjct: 185 LENFNISVSAPDALFHAAARSGGWALRHP--------------------------RGG-A 217 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V R++ A L ++ + +G P + F D +P +G + N C E L Sbjct: 218 VVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQPLLPFE- 276 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 C LGS+NL + D ++L + +R VR+LD+V+D+N + + + + +R Sbjct: 277 ---ACTLGSVNLARFERGGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEISRRNRK 333 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG+ L L IPY +PEA+ +A E M F+ A +AS LA ERGA+ F S Sbjct: 334 IGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFPGFASS- 392 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 A R+ P RN+ IAPT T+A I Sbjct: 393 ---------------------APARSGGRP------------RRNATVTTIAPTGTLAII 419 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S I+P + YV+ + D + R EA + ++ G + Sbjct: 420 AGCSSGIEPLFALTYVRHALD-DAALPEEHPALGRALRAAGAEAALPAVRAA-GRARGVA 477 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894 +PD + ++ ATA ++ P + + Q+ +D S + L S + + YR A+ Sbjct: 478 GVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVEDVACAYRLAFE 537 Query: 895 MGLKTTYYLRSRS 907 +G K R S Sbjct: 538 LGCKGITVYRDGS 550 >gi|323227179|gb|EGA11353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 674 Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 181/617 (29%), Positives = 281/617 (45%), Gaps = 76/617 (12%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + VA+ LA + E A + + + Sbjct: 88 FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ + +NA LFSP D+ YGK F +IA E Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321 Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y E AD K + I+A ++ + + FE+G+P+I F+D N +P G ++ SN Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377 Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI +NS+S CNLGS+N +AH D + T+ TA+R Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ N AIGLG M L I Y SPEA++ + I Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 492 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741 ++HA+ S+ LA+ERG ++ F S + G + + A+VR A + Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800 +R W +L+ V G+ N N A+ PT +I+ I + SI P + + K +G Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F+ NE N++ D A++I P +I++ Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641 Query: 861 SRRQKWIDQAQSLNLYL 877 + + +DQ SL L+ Sbjct: 642 AEATRHVDQGLSLTLFF 658 >gi|28804675|dbj|BAC58079.1| iibonucleotide reductase large subunit [Cercopithecine herpesvirus 1] Length = 997 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 163/593 (27%), Positives = 264/593 (44%), Gaps = 49/593 (8%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F+ + STP + GTR P +SSC+L P ++ LA + +G Sbjct: 413 FFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVN-PQ-------TTTTHSTLAAITQNVG 464 Query: 402 NDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G + N +G ++P LK + A N R V YLE WH D Sbjct: 465 PILARSGGIGLCLQEFNDARRGNASIMPTLKALDSLVAAYNNQSLRPTGVTVYLEPWHSD 524 Query: 459 VEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L ++ G++ RR ++ +A W+PDLF KR+ +N WTLF+ L Sbjct: 525 IMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAGLSLS 584 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 +G+EFE Y E G+ + + A A+ R T TG P++ FKD N Sbjct: 585 RFHGEEFETLYVRQEENG-FGQAMPIQDL-AYAIVRAAAT----TGSPFVMFKDAVNRHY 638 Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 G + SNLCTEI +++ ++ VCNL S+NL FD+++L +R V Sbjct: 639 IYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVRACVL 698 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +++ +ID + ++ + R++G+G+ G +A + + AS E E+ E + Sbjct: 699 MVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVM 758 Query: 691 SFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 A+ S L GA + FK S++ G F + + R W+ Sbjct: 759 LLAAMQTSNALCFH-GARPFHEFKHSMFSAGRFHWEG---FPDARPRYEGE------WER 808 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++ + G+RNS +A+ PT A I VS+ P + N++ K G+ N+ L+ Sbjct: 809 LRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLQ 868 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESASRR 863 EL++ + + D ++E+ L H TAFE D LI+ + R Sbjct: 869 ELRE-TFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCADR 927 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910 ++D +QSL LY+ E + L + A+ GLKT YY + R AT+ Sbjct: 928 APYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980 >gi|30984467|ref|NP_851899.1| ribonucleotide reductase subunit 1 [Macacine herpesvirus 1] gi|30844281|gb|AAP41457.1| large subunit of ribonucleotide reductase [Macacine herpesvirus 1] Length = 997 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 163/593 (27%), Positives = 264/593 (44%), Gaps = 49/593 (8%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F+ + STP + GTR P +SSC+L P ++ LA + +G Sbjct: 413 FFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVN-PQ-------TTTTHSTLAAITQNVG 464 Query: 402 NDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G + N +G ++P LK + A N R V YLE WH D Sbjct: 465 PILARSGGIGLCLQEFNDARRGNASIMPTLKALDSLVAAYNNQSLRPTGVTVYLEPWHSD 524 Query: 459 VEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L ++ G++ RR ++ +A W+PDLF KR+ +N WTLF+ L Sbjct: 525 IMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAGLSLS 584 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 +G+EFE Y E G+ + + A A+ R T TG P++ FKD N Sbjct: 585 RFHGEEFETLYVRQEENG-FGQAMPIQDL-AYAIVRAAAT----TGSPFVMFKDAVNRHY 638 Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 G + SNLCTEI +++ ++ VCNL S+NL FD+++L +R V Sbjct: 639 IYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVRACVL 698 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +++ +ID + ++ + R++G+G+ G +A + + AS E E+ E + Sbjct: 699 MVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVM 758 Query: 691 SFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 A+ S L GA + FK S++ G F + + R W+ Sbjct: 759 LLAAMQTSNALCFH-GARPFHEFKHSMFSAGRFHWEG---FPDARPRYEGE------WER 808 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++ + G+RNS +A+ PT A I VS+ P + N++ K G+ N+ L+ Sbjct: 809 LRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLQ 868 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESASRR 863 EL++ + + D ++E+ L H TAFE D LI+ + R Sbjct: 869 ELRE-TFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCADR 927 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910 ++D +QSL LY+ E + L + A+ GLKT YY + R AT+ Sbjct: 928 APYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980 >gi|332638432|ref|ZP_08417295.1| ribonucleotide-diphosphate reductase subunit alpha [Weissella cibaria KACC 11862] Length = 723 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 174/683 (25%), Positives = 311/683 (45%), Gaps = 86/683 (12%) Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFM 322 V ++L + +F + L + LK +DF F+ ++ Y +Y + N S + + + Sbjct: 68 VDQKMLQQYSFNF-ITRLYDYLK-AQDFQFKSFMAAYKFYAQYAVKTNDSEYYV-ENYID 124 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381 R+AM E+ A+ + + + +TP+ N+G +R +L SCF+ DD+ Sbjct: 125 RIAMNALFYGAGNEELAMNLADEMVHQRYQPATPSFLNAGRSRRGELVSCFILQTTDDMN 184 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I + L+K GG+G + + +R GA I G + + GV+P +K+ D+ NQ Sbjct: 185 AIGRVINSALQLSKIGGGVGINLSNLREAGAPIKGISNAASGVVPVMKLLEDSFSYSNQM 244 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R GA YL +H D+ FL +K D++ R ++ +PD F + NA L Sbjct: 245 GQRNGAGVTYLSVFHPDIMSFLATKKENADEKVRVKTLSLGVTVPDKFYDLIRSNADMFL 304 Query: 502 FSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 FSP D+ YG+ F +I E Y+ +IK + KI A L ++ M E+G+ Sbjct: 305 FSP---YDVEREYGEPFNYIDITAE-YDNMVANPKIKKY-KIRARDLENEISKMQQESGY 359 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSIN 606 P++ D N +P G V SSNLC+EI + E CNLGS N Sbjct: 360 PYVINIDTVNAANPIH--GKVISSNLCSEILQVQKASEIDNEQQYVTMGSDVSCNLGSTN 417 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 ++ A F A ++ T +R L V D + + + N A+GLG MG + Sbjct: 418 IVNMMATTDF-----ARSVETMMRALTFVSDNSDLDIVPSVQNGNRELHAVGLGAMGLHA 472 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--- 721 H+ Y EA++ + ++++ + AS ++A+ERG ++ F+ S + G + Sbjct: 473 FFAKNHMYYGDEEALDFTNVYFLMLNYYTLLASNKIAKERGESFYEFEKSAYADGSYFNK 532 Query: 722 --PIDSIGLLAEVRDELAMNR-TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 D A+V++ + ++ W LK+ V+ G+ N+ +AIAPT +I+ + Sbjct: 533 YLMADWSPKTAKVQEIFEQHHFPTKHDWAMLKESVQKHGLYNAYRLAIAPTGSISYVNDS 592 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + S+ P ++N++++R E I + Y +G Sbjct: 593 TASLHP---------------------IINKIEER---QEKKIGKIYYPAPYLGT----- 623 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSG 882 D + +A+ +D +I+ + Q+ IDQ +L L++ D+ + Sbjct: 624 -DTLPYYESAYNLDMRKVIDVYATAQQHIDQGMALTLFMRSTIPAGLYEWKNGRTDKMTT 682 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 683 RDLNILRMYAYHKGVKSIYYVRT 705 >gi|163793808|ref|ZP_02187782.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium BAL199] gi|159180919|gb|EDP65436.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium BAL199] Length = 768 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 170/621 (27%), Positives = 277/621 (44%), Gaps = 96/621 (15%) Query: 299 QILYDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCST 355 QI +Y L + G +E PQ + RVA LA E K++ A FY + + F+ + Sbjct: 10 QIWDMKYRLRVEGEAVEASPQDSWRRVATALAEAEAPKDRARWAERFYEAMEGYRFLPAG 69 Query: 356 PTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 L +GT R L +CF + T+PD + GIF +L+E A+ + GG+G D++ +R GA Sbjct: 70 RILAGAGTGRSVTLFNCFVMGTIPDSMGGIFESLKEAALTMQQGGGIGYDFSTLRPRGAP 129 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + G + G + F+ V + + G R+GA+ A L H D+E F++ ++ D Sbjct: 130 VKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATLRCDHPDIEAFVEAKR----DP 185 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R N + I D FM+ V + W L FE A Sbjct: 186 SRLRMFNLSVLITDPFMEAVKTDGDWDLV---------------FEGA------------ 218 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 +R + A ALW +++ ++ P + F D N R+ + + ++N C E L Sbjct: 219 --AYRTVKARALWDRIMQTTYDVAEPGVIFIDRINQRNNLHYCETISATNPCGEQPL--- 273 Query: 594 SEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 C LGS+NL A + D LA + AVR++DNV+D++ +E Sbjct: 274 -PPYGACLLGSVNLATLIARPFEADAALDETALAEIVPLAVRMMDNVVDVSRFPLEAQAA 332 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R IGLG+ G AL + Y SPEAV + M + HA AS++LA+E+G + Sbjct: 333 EARGKRRIGLGVTGLADALIFCGLRYGSPEAVATTERWMSLLRRHAYRASIDLAREKGPF 392 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F + G +SI L E +L++ + G+RN+ +IAP Sbjct: 393 PLFDAKPYLAG----ESIRELDE----------------DLREAIAEHGIRNALVTSIAP 432 Query: 769 TATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T TI+ VS ++P + Y ++ + D + + V++L R + +LK Sbjct: 433 TGTISLFADNVSSGLEPVFSFTYDRTVLMPDGS-KKTEEVSDLAYR------LYRELKGP 485 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 D + + +HA + ++++A QK++D + S + E +DF Sbjct: 486 DAPLTD--------AFVHAQSLAPSDHVVMQAAV--QKYVDSSISKTINCPE----DIDF 531 Query: 888 -----IYRQAWLMGLK--TTY 901 +YRQA+ G K TTY Sbjct: 532 EAFKSVYRQAYESGCKGCTTY 552 >gi|1710393|sp|P50643|RIR1_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|437736|emb|CAA50976.1| ribonucleotide reductase [Suid herpesvirus 1] gi|525264|emb|CAA56775.1| ribonucleotid reductase, large subunit [Suid herpesvirus 1] gi|40253967|tpg|DAA02162.1| TPA_exp: large subunit of ribonucleotide reductase [Suid herpesvirus 1] gi|1090509|prf||2019240A ribonucleotide reductase:SUBUNIT=large Length = 835 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 173/642 (26%), Positives = 295/642 (45%), Gaps = 59/642 (9%) Query: 305 YFLHINGSRIEMPQAFFMRVA----------MGLALKETEKEKRAVE-FYNLLSSFHFMC 353 Y + R E FF+R+A M L L ++ + ++ L++ + Sbjct: 201 YLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDAYFRALATQAIVP 260 Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGAL-QENAMLAKYSGGLGNDWTPVRGLG 411 +TP + +G L+SC+L +P A+ E A + GG+G L Sbjct: 261 ATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLS------LQ 314 Query: 412 AHIHGTNGK-SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-T 469 + +G ++G++ LK + A+N +R VC Y+E WH DV L++R Sbjct: 315 SFNRTPSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRGMLA 374 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D+ R ++ + W PDLF +R ++ WTLF D S L L+G +F YE Sbjct: 375 ADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAREYE 433 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582 ER E + ++ + + ++T G P++ KD CN G + +S Sbjct: 434 RLERLGLGVESLPIQDMAFLIVRSAVMT-----GSPFLMMKDACNRHFHTDTRGAALATS 488 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLCTEI ++ E VCNL S+NL A A FD+ L R A ++ ++ I + Sbjct: 489 NLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIGNYP 548 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + R++G+GL G + + L + A P A + E + + + ASVEL Sbjct: 549 TGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASVELC 608 Query: 703 QERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 ERG + F+ S + +GV P D+ + +++ R WD L+ R+ G+ N Sbjct: 609 -ERGLRPFDGFEHSRYARGVMPFDAY-------ERVSLREPMR--WDALRVRIAEHGVYN 658 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWD 817 + +A+ PT + + + S+ P++ N++ K +SG+ N L+ L++ R+ Sbjct: 659 AQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPRECAR 718 Query: 818 EAMISDLKYHDGSI-GNIERIP--DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 ++ L+ S+ +P L K TAFE D LI+ + R ++D +QS++ Sbjct: 719 RDAVARLERAQWSVAAAFGELPAGHPLAKFK-TAFEYDQELLIDMCADRAPFVDHSQSMS 777 Query: 875 LYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910 L+L EP+ KL + +A+ +GLKT YY + R AT+ Sbjct: 778 LFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATN 819 >gi|313665033|ref|YP_004046904.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma leachii PG50] gi|312949963|gb|ADR24559.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma leachii PG50] Length = 720 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 160/588 (27%), Positives = 268/588 (45%), Gaps = 73/588 (12%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+ +H + SC+L D++ I + + L+K GG+ T +R Sbjct: 157 FQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRE 216 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G+ I +G S G IP +K+ D+ +Q G+R+GA Y+ H D+ LD ++ Sbjct: 217 TGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKREN 276 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526 D++ R ++ IPD+ + N LFSP D+ YGK + I + YE Sbjct: 277 ADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKTYGKPLSDISITEKYYE 333 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + K + ISA + + + FE+G+P+I F+D N R+ G + SNLC+ Sbjct: 334 MLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCS 391 Query: 587 EITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI S++ E + CNLGS+N+ + + + + +I A+ LD Sbjct: 392 EIVQVSTASEYSSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EFSDSIYNAISALDI 447 Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V D+N +I+K NH A+GLG M L I Y SPEAV+ + + Sbjct: 448 VSRNSDLNASPSIKKGNAENH---AVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTV 504 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIGLLAEVRDELAMNRTSR 743 +++A AS +LA+E ++SF S + G + D EL + + Sbjct: 505 AYNAFKASNKLAKEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQ 564 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +P W +L + +K G+ NS+ MA+APT +I+ + + S+ P + V+ Sbjct: 565 IPSQADWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKLGR 624 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V ++ +N ++ Y+ ++G E PD + I A A Sbjct: 625 VYVPAYQIN------------FDNMGYY--AMGTYELGPDPIINIAAAA----------- 659 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q+ +DQA SL L++ D+ + + L+ Y A+ G + YY+R R Sbjct: 660 ----QQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRIR 703 >gi|240169544|ref|ZP_04748203.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium kansasii ATCC 12478] Length = 693 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 182/668 (27%), Positives = 301/668 (45%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + V++ LA +T ++ V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVSLTLAGGDTTLAEQLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 129 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDNPRIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSYFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPNFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHITSVPSIEQGNNESHAIGLGQMNLHGYLARERIFYGSEEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS ++ ERG + F+ S + G F + E + E L Sbjct: 475 IYFYTVLYHALRASNRISIERGTHFKGFERSKYASGEFFDKYTEQIWEPKTEKVRRLFAA 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 +P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 ADIHIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 584 ----------IVSKVEIRK-------------EGKIGRVYYPAPYMTNDNLEYYQDAYEI 620 Query: 852 DPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ +D + ++++ AW G+KT YY+R R + Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFMDTATTREVNKAQIYAWRKGIKTLYYIRLRQ-MA 679 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 680 LEGTEVEG 687 >gi|57790964|ref|YP_182368.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1] gi|5918980|gb|AAD56211.1|AF168792_12 ribonucleotide reductase large subunit [Gallid herpesvirus 1] Length = 785 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 172/611 (28%), Positives = 270/611 (44%), Gaps = 80/611 (13%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT------------TVPDDLYGIFGALQE 389 F+ LSS + TP + GT +SCFL ++P+++ I Sbjct: 195 FFTCLSSQLIVPPTPVMLFGGTSLAAYASCFLIDSSGRNTERRSMSLPEEVIPIM----- 249 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 GG+G + G G + FLK + A N KR +C Sbjct: 250 -----NNRGGIG--------ISLPCLGAPQNESGCLGFLKALDSLVAASNGAAKRPTGLC 296 Query: 450 AYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEV 507 Y E WH D + L +R ++ G++ R ++ TA W+PDLFMKR+ Q + WTLF Sbjct: 297 VYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPGSKWTLFD-HRG 355 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L +L+G+EFE YE ER+ + + ++ + TG P++ FKD Sbjct: 356 EHLSNLFGEEFEKEYERLERKMLEWPLSLSPRLCSDN------QKCSSTGTPFVVFKDAF 409 Query: 568 NIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---------- 615 N QH + SNLCTEI + S+ VCNL SINL A N + Sbjct: 410 NRHYFYNMQHR-ALKCSNLCTEIAHMADSDTVGVCNLISINLAAMVKNARAGLAGKPGSF 468 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FDY+ L T RTA + +I + ++A+ NH R++G+G+ G +A + Sbjct: 469 FDYELLRETARTATIFANVMISLGNMPSQRAQSGNHRLRSLGVGVQGLHTACLMQGFGMT 528 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSI-GLLAEV 732 S E E D E ++ S L E G + ++ S + G ID Sbjct: 529 SVEGFEFNDTVFELLALETTGISCRLC-ELGLPPFDKYRESYYALGWLHIDGWPNTKLRY 587 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 ++E WD L+ R+ G+ N +A+ PTA+ + I VS+ P + N++ K Sbjct: 588 KNE----------WDSLRHRIDPSGLYNCQTVALMPTASSSQITEVSEGFQPVFGNMFSK 637 Query: 793 SNMSGDFTVVNSFL---VNELKQRDLWDEAMISDLKYHDGSI----GNIERIPDDLKKIH 845 + +G+ + L ++EL +A +++LK H S+ G+ L K Sbjct: 638 ISTTGEEVRPHLALMDAIDELYSDQGEKQAFLANLKKHQWSVRAALGSAWSESHVLAKFQ 697 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKTT 900 TAFE+D L+ ++RR +ID +QS LY+ E S ++ + + A+ GLKT Sbjct: 698 -TAFELDQEKLLYLSARRAPFIDHSQSNTLYITEDVDGTLSASRVSRLLQVAFKYGLKTA 756 Query: 901 -YYLRSRSATS 910 YY + R T+ Sbjct: 757 MYYCKVRKITN 767 >gi|126802153|ref|YP_068342.2| ribonucleotide reductase subunit 1 [Suid herpesvirus 1] Length = 790 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 173/642 (26%), Positives = 295/642 (45%), Gaps = 59/642 (9%) Query: 305 YFLHINGSRIEMPQAFFMRVA----------MGLALKETEKEKRAVE-FYNLLSSFHFMC 353 Y + R E FF+R+A M L L ++ + ++ L++ + Sbjct: 156 YLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDAYFRALATQAIVP 215 Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGAL-QENAMLAKYSGGLGNDWTPVRGLG 411 +TP + +G L+SC+L +P A+ E A + GG+G L Sbjct: 216 ATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLS------LQ 269 Query: 412 AHIHGTNGK-SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-T 469 + +G ++G++ LK + A+N +R VC Y+E WH DV L++R Sbjct: 270 SFNRTPSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRGMLA 329 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D+ R ++ + W PDLF +R ++ WTLF D S L L+G +F YE Sbjct: 330 ADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAREYE 388 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582 ER E + ++ + + ++T G P++ KD CN G + +S Sbjct: 389 RLERLGLGVESLPIQDMAFLIVRSAVMT-----GSPFLMMKDACNRHFHTDTRGAALATS 443 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLCTEI ++ E VCNL S+NL A A FD+ L R A ++ ++ I + Sbjct: 444 NLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIGNYP 503 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + R++G+GL G + + L + A P A + E + + + ASVEL Sbjct: 504 TGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASVELC 563 Query: 703 QERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 ERG + F+ S + +GV P D+ + +++ R WD L+ R+ G+ N Sbjct: 564 -ERGLRPFDGFEHSRYARGVMPFDAY-------ERVSLREPMR--WDALRVRIAEHGVYN 613 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWD 817 + +A+ PT + + + S+ P++ N++ K +SG+ N L+ L++ R+ Sbjct: 614 AQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPRECAR 673 Query: 818 EAMISDLKYHDGSI-GNIERIPDD--LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 ++ L+ S+ +P L K TAFE D LI+ + R ++D +QS++ Sbjct: 674 RDAVARLERAQWSVAAAFGELPAGHPLAKFK-TAFEYDQELLIDMCADRAPFVDHSQSMS 732 Query: 875 LYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910 L+L EP+ KL + +A+ +GLKT YY + R AT+ Sbjct: 733 LFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATN 774 >gi|311068262|ref|YP_003973185.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus atrophaeus 1942] gi|310868779|gb|ADP32254.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus atrophaeus 1942] Length = 700 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 174/658 (26%), Positives = 294/658 (44%), Gaps = 92/658 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F ++ Y+ Y L N + +E + VA+ A +TEK K ++ Sbjct: 85 YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDTEKAK---DYV 141 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 L+ + + STPT N+G R +L SCFL V D L I A+ + L+K GG+ Sbjct: 142 RLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +F Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K + D+ R ++ IPD F++ ++ +F P + + + E ++ Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN- 320 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y++ D +K KI+A L K+ + E+G+P+I F+D N HV V S Sbjct: 321 EMYDKFVDNPRVKK-EKINARKLLEKLAVLRSESGYPYIMFQDNVNKEHALNHVSKVKFS 379 Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+E+ S EE + CNLGS+N+L N ++ + T++ A Sbjct: 380 NLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-----NVMEHKSIEHTVKLATD 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L +V + + +++N ++IGLG M L I Y SPEA + A+ Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737 ++F++I S ELA+E+GA + ++GS + G + + I L E Sbjct: 495 VNFYSIQRSAELAKEKGATFEQYEGSSYATGEYFDKYVSNDFSPAYEKIAALFE-----G 549 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789 M+ + W +LK V GM +S + IAPT +I+ + + S+ P +Y N Sbjct: 550 MHIPTIEDWKQLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 M G N F E A+ Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++D +++ + Q+ IDQ S L+L D + + L+ I A G+KT YY R++ Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|218296963|ref|ZP_03497649.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus aquaticus Y51MC23] gi|218242666|gb|EED09202.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus aquaticus Y51MC23] Length = 560 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 172/583 (29%), Positives = 262/583 (44%), Gaps = 109/583 (18%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +F ++ ++ +TP N G + SC+ T V DD I A+ E M++K GG Sbjct: 57 KFQRYMARGYYSLATPVWANYGLKRGLPISCYGTYVEDDTASILRAVAEVGMMSKQGGGT 116 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 +R GA I NG+S G F + + NQG R+G AYL+ H D+E Sbjct: 117 SVYLGALRPRGAPIR-DNGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYLDVEHPDLE 175 Query: 461 EFLDLRKNTGDDRRRTHDMNTANW---IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 E+ ++ R ++ + W IPD +M+ + AG Sbjct: 176 EWFRIQ-------REGSEIQSLFWGVSIPDRWMEEMV--AG------------------- 207 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QH 575 DR + + W K+L FE G P++ F+D N PQ + Sbjct: 208 ------------DRAKRET---------WAKILKSRFEAGIPYLFFRDAANRGMPQVFRE 246 Query: 576 VGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +G+ + +SNLCTEI L SS EE+ VC L S+NLL +D K + T V LD+ Sbjct: 247 LGLRIWASNLCTEIMLPSSPEESFVCCLSSLNLL------HYDEWKETDAVETLVIFLDS 300 Query: 635 VID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 V+D +E+A + +RAIGLG++G+ S L IP S EA + E + Sbjct: 301 VLDDFIEKAEGIPYLERAVRFARRYRAIGLGVLGWHSYLQSRMIPLESLEAQYLNQEIFK 360 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I E A+E S W + P D + + E Sbjct: 361 TIR--------ERAEE--------ASRWLRKRHPEDELSGVGE----------------- 387 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 LK+R RN+ +AIAPT + + I G VS SI+P N Y+K N FL Sbjct: 388 LKER------RNATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKAKVPFKNPFLE 441 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 L+Q+ +E + + H+GS+ +++ + D+ K + T EI + L+ A+ RQ+++ Sbjct: 442 ELLRQKGKDEERVWRSILEHNGSVQHLDFLNDEEKAVFKTFAEISQLELVRQAAARQRYV 501 Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 DQ QSLNL + E K ++ +Y +AW GLK+ YY S+S Sbjct: 502 DQGQSLNLVIHPEAPLKDVNELYLEAWRSGLKSLYYQWSQSVA 544 >gi|557567|gb|AAA64444.1| ribonucleotide reductase R1 subunit [Mycobacterium tuberculosis str. Erdman] Length = 723 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 183/668 (27%), Positives = 297/668 (44%), Gaps = 82/668 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 99 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 158 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 159 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 215 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R G I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 216 VALLLTNIREHGGAIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 275 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 276 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 332 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 333 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 389 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 390 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 444 Query: 626 RTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 445 EVAIRALTAVRHQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 504 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + + L + Sbjct: 505 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 564 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 565 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 613 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 614 ----------IVSKVEVRK-------------EGKIGRVYYPAPYMTNDNLEYYEDAYEI 650 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R + Sbjct: 651 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 709 Query: 911 VEKSTLKG 918 +E + ++G Sbjct: 710 LEGTEVEG 717 >gi|51246679|ref|YP_066563.1| ribonucleoside-diphosphate reductase [Desulfotalea psychrophila LSv54] gi|50877716|emb|CAG37556.1| probable ribonucleoside-diphosphate reductase [Desulfotalea psychrophila LSv54] Length = 785 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 147/563 (26%), Positives = 251/563 (44%), Gaps = 82/563 (14%) Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV-------EFYNLLSSFHF 351 +L RY+L + G+ +E +A RVA +A ++ + +F+ ++ F Sbjct: 73 VLARRYYLKDDAGNSLEDWKALAHRVAEAVAPEDATGKNEVTGIKQLRDDFFTMIYQLDF 132 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++P L N+GT QLS+CF+ V D + GIF A++ A++ K GG G ++ +R Sbjct: 133 LPNSPCLMNAGTEIGQLSACFVLPVEDSMDGIFTAIRNGALVHKTGGGTGYSFSRIRACN 192 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T+G + G + F V + + QGGKR+GA L H D+ F+ + + Sbjct: 193 ASVKSTHGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDIMAFISAK----E 248 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D+ + ++ N + I DLFM + + + L P Sbjct: 249 DQDKFNNFNFSVAITDLFMAALEADKEYDLIEP-------------------------ST 283 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V +++AV ++ K++ + + G P + F D N + +G ++N C E L Sbjct: 284 GE--VMGQLNAVEVFAKIVDLAWHNGEPGVLFIDAANRDNTTPQLGDFEATNPCGEQWLL 341 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 CNLGSINL N++ DY +L ++TA LDNVID N I + + Sbjct: 342 PYES----CNLGSINLGNFVKNDEVDYSRLGQIVKTATCFLDNVIDCNVFPIPEIGEMTL 397 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R IGLG+MG L L IPY S E +A E M+FI S +LA+E+GA+ ++ Sbjct: 398 KTRKIGLGIMGLHDLLIQLAIPYGSEEGRLLAAEVMQFIRDRCEEQSRKLAEEKGAFPAY 457 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + ++P RN+ +I PT T Sbjct: 458 DAEI---NLYP----------------------------------ARRNAALTSIQPTGT 480 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 ++ I + +P + + +K M GD +VN +++ + + ++ + Sbjct: 481 VSMIADCASGCEPYFSIVMMKHVMDGDRLLMVNKHFEKIAREQGFYSDDLMVKVAESGTV 540 Query: 831 IGNIERIPDDLKKIHATAFEIDP 853 +G+ E IP+ ++ TA +I P Sbjct: 541 VGHAE-IPEKWQEAFRTAQDISP 562 >gi|15827932|ref|NP_302195.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium leprae TN] gi|221230409|ref|YP_002503825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium leprae Br4923] gi|13093485|emb|CAC30687.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium leprae] gi|219933516|emb|CAR71829.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium leprae Br4923] Length = 693 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 179/666 (26%), Positives = 296/666 (44%), Gaps = 78/666 (11%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + VA+ LA +T ++ V Sbjct: 69 DRAYAKKFRFSTFLGAFKYYTSYTLKTFDGKRYLERLEDRVCMVALTLAAGDTGLAEKLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSVNSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLSNIREHGAPIKNIEHQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFS +V ++++ + Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVIIPDITFELAKRNEDMYLFSSYDVERVYEVPFADIS 305 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++K+ + FE+G+P++ F+D N +P + G + Sbjct: 306 VT-EKYYEMLDDARIRK-TKIKAREFFQKLAELQFESGYPYVMFEDTVNRANPIE--GKI 361 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A T+ Sbjct: 362 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTVEV 416 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 417 AIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLSREGIFYGSEEGVDFTNIY 476 Query: 687 MEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRT 741 + FH + AS +A ERG + F+ S + G F I E + +L Sbjct: 477 FYTVLFHVLLASNSIAIERGTFFKGFERSKYASGEFFDKYIEQTWEPKTDKVRQLFAEAA 536 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R+P W LK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 537 IRIPTQNDWKRLKELVVAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 583 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853 +V++++ R +G IG + + +D + + A+EI Sbjct: 584 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLQYYQDAYEIGY 622 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 623 QKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 681 Query: 913 KSTLKG 918 + ++G Sbjct: 682 GTEVEG 687 >gi|18202755|sp|Q9CBQ0|RIR1_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase R1 subunit Length = 721 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 179/666 (26%), Positives = 296/666 (44%), Gaps = 78/666 (11%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + VA+ LA +T ++ V Sbjct: 97 DRAYAKKFRFSTFLGAFKYYTSYTLKTFDGKRYLERLEDRVCMVALTLAAGDTGLAEKLV 156 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG Sbjct: 157 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSVNSALQLSKRGGG 213 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 214 VALLLSNIREHGAPIKNIEHQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 273 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 FLD ++ D++ R ++ IPD+ + +N LFS +V ++++ + Sbjct: 274 YRFLDTKRENADEKIRIKTLSLGVIIPDITFELAKRNEDMYLFSSYDVERVYEVPFADIS 333 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + E Y D I+ KI A ++K+ + FE+G+P++ F+D N +P + G + Sbjct: 334 VT-EKYYEMLDDARIRK-TKIKAREFFQKLAELQFESGYPYVMFEDTVNRANPIE--GKI 389 Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI S+ + CNLGS+N+ D A T+ Sbjct: 390 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTVEV 444 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 445 AIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLSREGIFYGSEEGVDFTNIY 504 Query: 687 MEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRT 741 + FH + AS +A ERG + F+ S + G F I E + +L Sbjct: 505 FYTVLFHVLLASNSIAIERGTFFKGFERSKYASGEFFDKYIEQTWEPKTDKVRQLFAEAA 564 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R+P W LK+ V G+ N N A+ PT +I+ I + SI P Sbjct: 565 IRIPTQNDWKRLKELVVAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 611 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853 +V++++ R +G IG + + +D + + A+EI Sbjct: 612 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLQYYQDAYEIGY 650 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R ++E Sbjct: 651 QKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 709 Query: 913 KSTLKG 918 + ++G Sbjct: 710 GTEVEG 715 >gi|259502688|ref|ZP_05745590.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] gi|259169333|gb|EEW53828.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] Length = 723 Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 167/622 (26%), Positives = 278/622 (44%), Gaps = 80/622 (12%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381 RVAM E+ A++ + + + +TPT N G R + SCF DD+ Sbjct: 125 RVAMNALYLADGDEELAMDLADEIIHQRYQPATPTFLNVGRKRRGEFVSCFAIQATDDMN 184 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I + L+K GG+G + + +R GA I G + GV+P +K+ D+ NQ Sbjct: 185 TIGRTINSALQLSKIGGGVGINLSNLREAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQL 244 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R+GA YL +H D+ EFL +K D++ R ++ +PD F + V A L Sbjct: 245 GQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIRLKTLSLGITVPDKFYELVEAGADMYL 304 Query: 502 FSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 FSP D+ +YGK F + Y+ EI+ +K++A L ++ + E+G+P Sbjct: 305 FSP---YDVERIYGKPFSYVDITKEYDNLVANDEIRK-KKVNARDLEDEISKLQQESGYP 360 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEI--------TLNSSSEET----AVCNLGSINL 607 +I D N +P G + SNLC+EI + S ET CNLGS N+ Sbjct: 361 YIINIDTVNRANPID--GKIVMSNLCSEIAQVQVPSKVADDQSYETLGTDISCNLGSTNI 418 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 N D ++R +R L ++ D+ N + K+ N ++GLG MG S Sbjct: 419 A-----NMMDSPDFGRSVRAMMRGLTHISDVENLTVVPSIKRGNALAHSVGLGAMGLHSY 473 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV----F 721 L HI Y SP A+E +++ ++ AS E+A+ER + +F S + G + Sbjct: 474 LAKNHIQYGSPVAIEFTGVYFMLLNYWSLVASNEIAKERQETFHNFAKSAYADGSYFDKY 533 Query: 722 PIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 G ++V L P W LK++V G+ N +A+AP + + I + Sbjct: 534 TTKDWGPQSDVVKALFQGIFIPGPADWQALKEKVMQDGLYNEYRLAVAPNGSTSYINDST 593 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 S+ P + N +++R E MI + Y + N Sbjct: 594 ASLTP---------------------ITNRVEER---QEKMIGKIYYPAPYLSN------ 623 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------K 883 D + +A++ID +I++ + Q+ +DQ+ SL L++ P+G + Sbjct: 624 DTMPYYQSAYDIDMRKVIDTYAAAQQHVDQSMSLTLFMRSTIPAGLYEWKDGRTNKMTTR 683 Query: 884 KLDFIYRQAWLMGLKTTYYLRS 905 L+ + A+ G+K+ YY+R+ Sbjct: 684 DLNILRHYAYQKGIKSIYYIRT 705 >gi|242026167|ref|XP_002433270.1| ribonucleoside-diphosphate reductase large chain, putative [Pediculus humanus corporis] gi|212518899|gb|EEB20532.1| ribonucleoside-diphosphate reductase large chain, putative [Pediculus humanus corporis] Length = 237 Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 102/232 (43%), Positives = 141/232 (60%), Gaps = 6/232 (2%) Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L++ A+++K +GG+G + +R G +I GTNG S G++P L+V N+TA Sbjct: 4 DSIDGIYETLKQCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARY 63 Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QGG KR GA YLE WH D+ EFLDL+KNTG + R D+ A WIPDLFM+RV QN Sbjct: 64 VDQGGNKRPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQN 123 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W L P L D +G+EF Y +YE + +K+ A +LW ++ ET Sbjct: 124 QEWCLMCPKICPGLSDCWGEEFNKLYLSYEEKG-----LYVKKVKAQSLWYAIIESQVET 178 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 G P++ +KD CN +S QQ++G + SNLCTEI SS EE + NLL Sbjct: 179 GTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVKLVYYFFKNLL 230 >gi|269123321|ref|YP_003305898.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptobacillus moniliformis DSM 12112] gi|268314647|gb|ACZ01021.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptobacillus moniliformis DSM 12112] Length = 694 Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 169/652 (25%), Positives = 302/652 (46%), Gaps = 74/652 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYN 344 Y + F F+ Y+ Y Y L ++ + ++ + + R+++ L L + KEK A+++ Sbjct: 79 YSKKFRFKSYMAASKFYQSYAL-MDDTGEKILERYEDRISIVALYLGQGNKEK-ALKYAK 136 Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +L + + +TPT N+G R +L SCFL + D+L GI A + L+ GG+ + Sbjct: 137 MLINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLSGIGYAFESAMKLSSIGGGVAFN 196 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R G I G G++ GV+P +K+ D NQ G+R GA YL +H D+ EFL Sbjct: 197 ISKLRARGEAIKGVEGRASGVLPIMKILEDIFSYANQLGQRPGAGAVYLNVFHSDILEFL 256 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D +K D++ R ++ I D FM+ + + F P V + Y + ++ E Sbjct: 257 DTKKINVDEKIRIKSLSIGVIISDKFMELASADLPCYTFYPHSVYLEYGKYLDDLDMN-E 315 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 YE+ ++K +KI+ K+ E+G+P++ FKD N + +G V +N Sbjct: 316 WYEKLVANPKVKK-KKINVREFLVKVAQTQKESGYPYLFFKDNANREHALKEIGDVKFTN 374 Query: 584 LCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LCTEI +N+ EE + CNLGS+N+ N + ++ A+ Sbjct: 375 LCTEIMQLTEVSDINNYYEEDNIRRGISCNLGSVNIAKVMENKS-----IKEVVKNAIDS 429 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ N + KK+N ++GLG M L I Y S EA++ + + Sbjct: 430 LTTVSDLTNISIVPSIKKANDELSSVGLGAMNLHGYLAKNMIQYESREALDFCNVFFMMM 489 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PI-DSIGLLAEVRDELAM 738 +++++ S+E+A+ER ++ F+ S + G + P+ D + L E + Sbjct: 490 NYYSLERSMEIAKERSRSFLGFEKSEYANGKYFEKYITKEYMPVTDRVKELFE-----GI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + W +LK+ V G+ N+ MAIAP + + I + S+ P Sbjct: 545 HIPGVEEWKKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNATASVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R+ D + Y + D + +A+++D +++ Sbjct: 591 -------IVDKVEVREYGDSTTFYPMPY----------LNYDNFFYYKSAYDMDQKNILK 633 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 S Q+ +DQ S L+ + + L +Y A +GLK+ YY R+R +T Sbjct: 634 LISVIQRHVDQGISTILFTKSNDTTRDLSKLYILAHKLGLKSLYYTRTRKST 685 >gi|331703802|ref|YP_004400489.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802357|emb|CBW54511.1| Ribonucleoside diphosphate reductase alpha subunit [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 723 Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 168/661 (25%), Positives = 294/661 (44%), Gaps = 69/661 (10%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 FD + ND Y + F ++G ++ Y L + + + + + RV M Sbjct: 85 FDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETYTDRVLMNALFLGNG 143 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAML 393 +A + F +TPT N+ +H + SC+L D++ I + + L Sbjct: 144 NFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQL 203 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ T +R G+ I +G S G IP +K+ D+ +Q G+R+GA Y+ Sbjct: 204 SKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYIS 263 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ LD ++ D++ R ++ IPD+ + N LFSP +V +++ Sbjct: 264 AHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMALFSPYDVQKVYNK 323 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + I + YE + K + ISA + + + FE+G+P+I F+D N R+ Sbjct: 324 PLSDISITEKYYEILENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAH 381 Query: 574 QHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKL 621 G + SNLC+EI S++ E + CNLGS+N+ + + + Sbjct: 382 DKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EF 437 Query: 622 ASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + +I A+ LD V D++ +I+K NH A+GLG M L I Y SP Sbjct: 438 SDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNH---AVGLGAMNLHGFLATNKIMYDSP 494 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726 EAV+ + ++++A AS +LAQE ++SF S + G + Sbjct: 495 EAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYTKCEFDKWTPQT 554 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + E+ + + S+ W +L + +K G+ NS+ MA+APT +I+ + + S+ P Sbjct: 555 NRVKELFKDYDVQIPSQTDWIKLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVV 614 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + V+ V ++ +N ++ Y+ ++G E PD + I A Sbjct: 615 STVEVRKEGKLGRVYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVA 660 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A Q+ +DQA SL L++ D+ + + L+ Y A+ G + YY+R Sbjct: 661 AA---------------QQHVDQAISLTLFMTDKATTRDLNKAYVNAFKQGCSSIYYVRI 705 Query: 906 R 906 R Sbjct: 706 R 706 >gi|301321220|gb|ADK69863.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 720 Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 161/588 (27%), Positives = 271/588 (46%), Gaps = 73/588 (12%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+ +H + SC+L D++ I + + L+K GG+ T +R Sbjct: 157 FQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRE 216 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G+ I +G S G IP +K+ D+ +Q G+R+GA Y+ H D+ LD ++ Sbjct: 217 TGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKREN 276 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526 D++ R ++ IPD+ + N LFSP D+ YGK + I + YE Sbjct: 277 ADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKTYGKPLSDISITEKYYE 333 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + K + ISA + + + FE+G+P+I F+D N R+ G + SNLC+ Sbjct: 334 MLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCS 391 Query: 587 EIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI ++++SE E CNLGS+N+ + + + + +I A+ LD Sbjct: 392 EIVQVSTASEYNSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EFSDSIYNAISALDI 447 Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V D++ +I+K NH A+GLG M L + I Y SPEAV+ + + Sbjct: 448 VSRNSDLSASPSIQKGNALNH---AVGLGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTV 504 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIGLLAEVRDELAMNRTSR 743 +++A AS +LAQE ++SF S + G + D EL + + Sbjct: 505 AYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQ 564 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +P W +L + +K G+ NS+ MA+APT +I+ + + S+ P + V+ Sbjct: 565 IPSQADWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKLGR 624 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V ++ +N ++ Y+ ++G E PD + I A A Sbjct: 625 VYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVAAA----------- 659 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q+ +DQA SL L++ D+ + + L+ Y A+ G + YY+R R Sbjct: 660 ----QQHVDQAISLTLFMTDKATTRDLNKAYVNAFKQGCSSIYYVRIR 703 >gi|328464292|gb|EGF35722.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus helveticus MTCC 5463] Length = 505 Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 146/516 (28%), Positives = 246/516 (47%), Gaps = 73/516 (14%) Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S G+IP +K+ D+ NQ G+R+GA YL H + +FLD ++ D++ R ++ Sbjct: 5 SSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLS 64 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEI-KV 536 IPD+ + +N LFSP D+ YGK + I E Y+ + I K Sbjct: 65 LGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKE-YQNLLNNPRIKKT 120 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----TLNS 592 F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G + SNLC+EI T ++ Sbjct: 121 F--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPST 178 Query: 593 SSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI---DINCH 641 +E+ + CNLGS+N+ A + DKL + +V+ L+ V D++C Sbjct: 179 YNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDCA 234 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 KK N +RAIGLG M L HI Y SPEAVE I++HA S +L Sbjct: 235 P--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKL 292 Query: 702 AQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A++ GA+ FK S + D+ V P + E+ + + ++ W+EL Sbjct: 293 AEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIVAKYKLVIPTKEDWEELIT 350 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 ++K G+ N+N +A+APT +I+ + + S+ P + + V ++ +N+ Sbjct: 351 KIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYKINK-- 408 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 D+ + A+E+ P +I+ + QK++DQ+ Sbjct: 409 ---------------------------DNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSI 441 Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 SL L++ D + + L+ Y A+ + YY+R R Sbjct: 442 SLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVR 477 >gi|331701738|ref|YP_004398697.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus buchneri NRRL B-30929] gi|329129081|gb|AEB73634.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus buchneri NRRL B-30929] Length = 721 Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 178/711 (25%), Positives = 316/711 (44%), Gaps = 109/711 (15%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-----------FEYLGLQ-------- 299 +++E V+ L+ + YL + YE DF ++YL Q Sbjct: 38 FLKENVQPNLMKFDSLSDRFDYLIKNNYYEADFIHKYQLSFVEKLYQYLNDQDFHFKSFM 97 Query: 300 ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y +Y L N + + + ++F RVA E+ A++ + + + +TP Sbjct: 98 AAYKFYAQYALKTNDNDLYL-ESFLDRVAANALFFADGDEQLAMDLADEIVHQRYQPATP 156 Query: 357 TLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 + N+G + + SCFL DD+ I + L++ GG+G + + +R GA I Sbjct: 157 SFLNAGRENRGEFVSCFLIQTTDDMNTIGRTINSALQLSRIGGGVGINLSNLREAGAPIK 216 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K D++ R Sbjct: 217 HIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIR 276 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGE 533 ++ +PD F + + +A LFSP D+ YG F + Y+ + Sbjct: 277 LKTLSLGVTVPDKFYQLIKADADMYLFSP---YDVEREYGVPFSYVDITKEYDNLVANDK 333 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----- 588 I +KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 334 ISK-KKIKARDLETEISKLQQESGYPYIINIDTANRSNPI--AGRIVMSNLCSEILQVQT 390 Query: 589 --TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640 T+++ + CNLGS N+ NN D ++ + VR L V D N Sbjct: 391 PSTVDNQQHYIKMGKDISCNLGSTNI-----NNMIAGDDFGHSVESMVRALTFVTDHSNI 445 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + +K N +IGLG MG S L H+ Y SPE++E +++ ++ AS + Sbjct: 446 DVVPSIQKGNKESHSIGLGGMGLHSFLAKHHMYYGSPESIEFTSVYFMLLNYWSLVASNK 505 Query: 701 LAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 +A+ER + +F+ GS +D+ G F S + A +D+ ++ W+ LK Sbjct: 506 IAKERKETFVNFENSKYADGSYFDKYLDGSFAPKSAEVKALFKDDWI---PTKEDWENLK 562 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + V G+ + N +A+AP +I+ I + S+ P ++N + Sbjct: 563 ESVMKDGLYHQNRLAVAPNGSISYINDTTASLHP---------------------IINRI 601 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 ++R E+ I + Y + N D + +A+++D +I+ + Q+ IDQ Sbjct: 602 EER---QESKIGKIYYPAPYLSN------DTMPYYTSAYDMDMRKVIDIYAAAQQHIDQG 652 Query: 871 QSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +L L++ D+ + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAYKKGVKSIYYIRT 703 >gi|313140806|ref|ZP_07802999.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171] gi|313133316|gb|EFR50933.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171] Length = 731 Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 190/703 (27%), Positives = 301/703 (42%), Gaps = 92/703 (13%) Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Q P F RY E + H F+ K+ +A L+ + +L Sbjct: 82 QYYAPAVFERYSPEFLDGFYAHAESSGFEFGTFLGAFKFYTSYA-----LKTFDGKLYLE 136 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQ 367 + PQ VA+ LA E+RAVE+ + + S F +TPT N G + + Sbjct: 137 ------DFPQRC-AAVALELA---AGNEQRAVEYLDEMLSGAFQPATPTFLNLGKAQRGE 186 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SCFL + D + I + L+K GG+ + +R LGA I +S GVIP Sbjct: 187 AVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPV 246 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R + IPD Sbjct: 247 MKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPD 306 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVAL 545 + + + A LFSP D +YGK F +I+ E+Y+ I+ I A Sbjct: 307 VTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEMVADDRIRK-TYIDAREF 362 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----TLNSSSEETAV-- 599 + + + FE+G+P+I F+D N +P G + SNLC+EI +S +E+ Sbjct: 363 FTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEILQVQEASSYNEDLTYSH 420 Query: 600 ------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652 CNLGS+N+ LA T+ TA+R L +V + + +++N Sbjct: 421 VGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVSEHTRIDAVPSIRRANDE 474 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711 AIGLG M L I Y S EA++ D +++HA AS LA E G A+ F Sbjct: 475 GHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAYRASHTLAVEHGTAFRGF 534 Query: 712 ----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIG 757 +G+ +D+ S+ E+ L +P W EL+ + G Sbjct: 535 ADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAIPTEADWAELRDDILRDG 594 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLW 816 + N N A+ PT +I+ I + SI P + + K G +++ NE Sbjct: 595 IYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRVYYPAAYMTNE------- 647 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 N+E D A+EI ++++ + + +DQ SL L+ Sbjct: 648 ----------------NLEYYKD--------AYEIGWKAIVDTYAEATQHVDQGLSLTLF 683 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 684 FPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725 >gi|50313262|ref|YP_053066.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 1] gi|132607|sp|P28846|RIR1_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|42795148|gb|AAS45905.1| large subunit of ribonucleotide reductase [Equid herpesvirus 1] gi|49617005|gb|AAT67278.1| ribonucleotide reductase RR1 [Equid herpesvirus 1] Length = 790 Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 182/669 (27%), Positives = 295/669 (44%), Gaps = 80/669 (11%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339 LGLQ + Y+ +L + G RIE FF+R+A E+ A Sbjct: 132 LGLQSALKYEEMYLAKMRGGRIESMGQFFLRLATTATHYTMEEPAMARVLVSGEVGWTYI 191 Query: 340 -VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396 ++ L+ + +TP + G L+SC+L V D + ++E + Sbjct: 192 FKAYFTALAGQVLIPATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCN 251 Query: 397 SGGLGNDW----TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 GG+G TP + G S+GV+ LK+ + +A+N G+R VC Y Sbjct: 252 RGGIGLSLQRFNTPPK---------EGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYF 302 Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPD 505 E WH D+ L++R D+ R ++ W PDLF R + WTLF D Sbjct: 303 EPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLFD-D 361 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 S L +YGKE Q G + + A + R + TG P++ FKD Sbjct: 362 TASHLCHMYGKE-FEEEYERLEQCGFGVDSIPIQDMAFIIVRSAVM----TGSPFLMFKD 416 Query: 566 PCN--IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LA----HFAN-NQ 615 CN + G + SNLCTEI ++ + VCNL SINL LA H A Sbjct: 417 ACNKHYHFDLRRKGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPY 476 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ L TA +++++ + K+++ +R++GLG+ G +A +L + A Sbjct: 477 FDFAALGRAAATATIFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMA 536 Query: 676 SPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPEA ++ + E + +++ AS L + + F+ S + G P DS Sbjct: 537 SPEARQLNKQIAERLLLNSMKASATLCRLGMKPFKGFEDSKYSLGELPFDSYP------- 589 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + +R W L+ +K G+ NS +A PT + + + S+ P Y NL+ K Sbjct: 590 --GVTLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVT 647 Query: 795 MSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHD----GSIGNIERIPDDLKKIHAT 847 +G+ N L+ ++ R+ +S L+ G+ G++ + L K T Sbjct: 648 ATGEVLRPNLLLMRTIRSIFPRECARLQALSTLEMAQWSVVGAFGDLP-VGHPLSKFK-T 705 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TY 901 AFE D LI+ + R ++DQ+QS++L++ EP+ KL + A+ GLKT Y Sbjct: 706 AFEYDQRTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMY 765 Query: 902 YLRSRSATS 910 Y + + AT+ Sbjct: 766 YCKIKKATN 774 >gi|321315507|ref|YP_004207794.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis BSn5] gi|291484286|dbj|BAI85361.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. natto BEST195] gi|320021781|gb|ADV96767.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis BSn5] Length = 700 Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 172/658 (26%), Positives = 293/658 (44%), Gaps = 92/658 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F ++ Y+ Y L N + +E + VA+ A +TEK K E+ Sbjct: 85 YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDTEKAK---EYV 141 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 NL+ + + STPT N+G R +L SCFL V D L I A+ + L+K GG+ Sbjct: 142 NLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +F Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K + D+ R ++ IPD F++ ++ +F P + + + E ++ Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN- 320 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y++ D +K KI+ L K+ + E+G+P+I F+D N H+ V S Sbjct: 321 EMYDKFVDNPRVKK-EKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFS 379 Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+E+ S EE + CNLGS+N+L N ++ + T++ A Sbjct: 380 NLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-----NVMEHKSIEKTVKLATD 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L +V + + +++N ++IGLG M L I Y SPEA + A+ Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737 ++F++I S E+A+E+G + ++GS + G + + I L E Sbjct: 495 VNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFE-----G 549 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789 M+ + W +LK V GM +S + IAPT +I+ + + S+ P +Y N Sbjct: 550 MHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 M G N F E A+ Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++D +++ + Q+ IDQ S L+L D + + L+ I A G+KT YY R++ Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|16078801|ref|NP_389620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. 168] gi|221309617|ref|ZP_03591464.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. 168] gi|221313940|ref|ZP_03595745.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318863|ref|ZP_03600157.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. JH642] gi|221323135|ref|ZP_03604429.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. SMY] gi|1710384|sp|P50620|RIR1_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase large subunit gi|1154632|emb|CAA92810.1| NrdE [Bacillus subtilis subsp. subtilis str. 168] gi|2634122|emb|CAB13622.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 700 Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 172/658 (26%), Positives = 293/658 (44%), Gaps = 92/658 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F ++ Y+ Y L N + +E + VA+ A +TEK K E+ Sbjct: 85 YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDTEKAK---EYV 141 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 NL+ + + STPT N+G R +L SCFL V D L I A+ + L+K GG+ Sbjct: 142 NLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +F Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K + D+ R ++ IPD F++ ++ +F P + + + E ++ Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN- 320 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y++ D +K KI+ L K+ + E+G+P+I F+D N H+ V S Sbjct: 321 EMYDKFVDNPRVKK-EKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFS 379 Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+E+ S EE + CNLGS+N+L N ++ + T++ A Sbjct: 380 NLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-----NVMEHKSIEKTVKLATD 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L +V + + +++N ++IGLG M L I Y SPEA + A+ Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737 ++F++I S E+A+E+G + ++GS + G + + I L E Sbjct: 495 VNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFE-----G 549 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789 M+ + W +LK V GM +S + IAPT +I+ + + S+ P +Y N Sbjct: 550 MHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 M G N F E A+ Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++D +++ + Q+ IDQ S L+L D + + L+ I A G+KT YY R++ Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|157955347|gb|ABW06054.1| NrdE [Bacillus thuringiensis serovar alesti] Length = 694 Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 169/649 (26%), Positives = 303/649 (46%), Gaps = 66/649 (10%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+ GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIADESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A E+G + F S + G + D + +V+ + Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V++++ R + + Y + D + ++++++ LI+ Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682 >gi|224283651|ref|ZP_03646973.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium bifidum NCIMB 41171] Length = 698 Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 190/703 (27%), Positives = 301/703 (42%), Gaps = 92/703 (13%) Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Q P F RY E + H F+ K+ +A L+ + +L Sbjct: 49 QYYAPAVFERYSPEFLDGFYAHAESSGFEFGTFLGAFKFYTSYA-----LKTFDGKLYLE 103 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQ 367 + PQ VA+ LA E+RAVE+ + + S F +TPT N G + + Sbjct: 104 ------DFPQRC-AAVALELA---AGNEQRAVEYLDEMLSGAFQPATPTFLNLGKAQRGE 153 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SCFL + D + I + L+K GG+ + +R LGA I +S GVIP Sbjct: 154 AVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPV 213 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R + IPD Sbjct: 214 MKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPD 273 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVAL 545 + + + A LFSP D +YGK F +I+ E+Y+ I+ I A Sbjct: 274 VTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEMVADDRIRK-TYIDAREF 329 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----TLNSSSEETAV-- 599 + + + FE+G+P+I F+D N +P G + SNLC+EI +S +E+ Sbjct: 330 FTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEILQVQEASSYNEDLTYSH 387 Query: 600 ------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652 CNLGS+N+ LA T+ TA+R L +V + + +++N Sbjct: 388 VGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVSEHTRIDAVPSIRRANDE 441 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711 AIGLG M L I Y S EA++ D +++HA AS LA E G A+ F Sbjct: 442 GHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAYRASHTLAVEHGTAFRGF 501 Query: 712 ----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIG 757 +G+ +D+ S+ E+ L +P W EL+ + G Sbjct: 502 ADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAIPTEADWAELRDDILRDG 561 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLW 816 + N N A+ PT +I+ I + SI P + + K G +++ NE Sbjct: 562 IYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRVYYPAAYMTNE------- 614 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 N+E D A+EI ++++ + + +DQ SL L+ Sbjct: 615 ----------------NLEYYKD--------AYEIGWKAIVDTYAEATQHVDQGLSLTLF 650 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 651 FPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 692 >gi|310288087|ref|YP_003939346.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium bifidum S17] gi|309252024|gb|ADO53772.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium bifidum S17] Length = 731 Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 183/660 (27%), Positives = 290/660 (43%), Gaps = 84/660 (12%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L ++ + PQ VA+ LA E+RAVE+ + + S F Sbjct: 114 FLGAFKFYTSYALKTFDGKLYLEDFPQRC-AAVALELA---AGSEQRAVEYLDEMLSGAF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D + I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + + A LFSP D +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ I A + + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 347 VADDRIRK-TYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403 Query: 589 ----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 +S +E+ CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVS 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + +++N AIGLG M L I Y S EA++ D +++HA Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 AS LA E G A+ F +G+ +D+ S+ E+ L + Sbjct: 518 RASHALAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 P W EL+ + G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +++ NE N+E D A+EI ++++ Sbjct: 638 YYPAAYMTNE-----------------------NLEYYKD--------AYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725 >gi|311064960|ref|YP_003971686.1| ribonucleoside-diphosphate reductase subunit alpha NrdE [Bifidobacterium bifidum PRL2010] gi|310867280|gb|ADP36649.1| NrdE Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium bifidum PRL2010] Length = 731 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 183/660 (27%), Positives = 290/660 (43%), Gaps = 84/660 (12%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L ++ + PQ VA+ LA E+RAVE+ + + S F Sbjct: 114 FLGAFKFYTSYALKTFDGKLYLEDFPQRC-AAVALELA---AGNEQRAVEYLDEMLSGAF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D + I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + + A LFSP D +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ I A + + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 347 VADDRIRK-TYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403 Query: 589 ----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 +S +E+ CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVS 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + +++N AIGLG M L I Y S EA++ D +++HA Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 AS LA E G A+ F +G+ +D+ S+ E+ L + Sbjct: 518 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577 Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799 P W EL+ + G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +++ NE N+E D A+EI ++++ Sbjct: 638 YYPAAYMTNE-----------------------NLEYYKD--------AYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725 >gi|164688727|ref|ZP_02212755.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM 16795] gi|164602203|gb|EDQ95668.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM 16795] Length = 698 Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 181/662 (27%), Positives = 293/662 (44%), Gaps = 80/662 (12%) Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKET 333 D++Y D ++F F+ Y+ Y Y L N +E + + VA+ L E Sbjct: 73 DVIY---DFIRAKNFKFQSYMSASKFYQNYALKSNDGEEILENYEDKVLIVALTLGNGEP 129 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 + K E L + F +TPT N+G R ++ SCFL V D GI A+ Sbjct: 130 KLAKDIAE---KLINQEFQPATPTFLNAGRARGGKMVSCFLVNVEDSCEGISYAVSSANH 186 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + T +R G I G G + GV+ K+ + NQ G R+GA YL Sbjct: 187 LSKIGGGVALNLTRLRASGESIKGIKGAAGGVMGVAKLLEQSFSYFNQMGARQGAGAVYL 246 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D E LD +K D++ R ++ IPD FM+ +N F P + + Sbjct: 247 NVLHPDFETLLDSKKINADEKIRLTTLSIGAIIPDKFMELAEKNEKCYAFYPHSIYQKYG 306 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 ++ ++ E Y++ A+ EI+ ++I+ L ++ E+G+P++ F D N + Sbjct: 307 VHLDGIKMD-EWYDKLANDDEIEK-KEINPRELLTRIAQTQQESGYPYVVFIDSANEQHT 364 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDK 620 + VG++ SNLC EI + + CNLGS+N+ N D Sbjct: 365 LKDVGMIKMSNLCCEIFQYQTPSDIKGYGQVSDWGQDISCNLGSLNIA-----NVMDNKD 419 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + TI A+R L V D N + KK N + +IGLG M L I Y S E Sbjct: 420 IEKTIDVAIRALTYVSDNTNIEEVPTIKKGNDSSHSIGLGAMNLHGYLVREDIIYTSKEG 479 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-- 736 E AD + ++AI S+ +A E+G ++ F+ S + +G P + +D L Sbjct: 480 REFADVFFAMMRYYAIKTSMNIAIEKGETFNGFEKSEYAKG--PESELFKKYCTKDFLPT 537 Query: 737 ---------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +N ++ W EL ++VK G+ N+ AIAPT +I+ + + S+ P + Sbjct: 538 SEKVSKLFEGINIPTKEDWTELLQQVKNNGIYNAYLTAIAPTQSISYVQNSTSSVMPITE 597 Query: 788 NLYVKSNMSGDFTVVNS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + V++ GD T + FL NE ++ Y+ Sbjct: 598 QIEVRT--YGDSTTIYPMPFLTNE-------------NMLYYQ----------------- 625 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 +A+ ID + LI+ + Q IDQ S L++ D+ + + + Y A GLK+ YY R Sbjct: 626 -SAYRIDMLDLIDMVAIIQGHIDQGISTTLFVTDDKTTRDIARYYIYAHKKGLKSLYYTR 684 Query: 905 SR 906 ++ Sbjct: 685 TK 686 >gi|42561372|ref|NP_975823.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492870|emb|CAE77465.1| ribonucleoside-diphosphate reductase alpha subunit [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 723 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 160/588 (27%), Positives = 271/588 (46%), Gaps = 73/588 (12%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+ +H + SC+L D++ I + + L+K GG+ T +R Sbjct: 160 FQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRE 219 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G+ I +G S G IP +K+ D+ +Q G+R+GA Y+ H D+ LD ++ Sbjct: 220 TGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKREN 279 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526 D++ R ++ IPD+ + N LFSP D+ YGK + I + YE Sbjct: 280 ADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKTYGKPLSDISITEKYYE 336 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + K + ISA + + + FE+G+P+I F+D N R+ G + SNLC+ Sbjct: 337 MLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCS 394 Query: 587 EIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI ++++SE E CNLGS+N+ + + + + +I A+ LD Sbjct: 395 EIVQVSTASEYNSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EFSDSIYNAISALDI 450 Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V D++ +I+K NH A+GLG M L + I Y SPEAV+ + + Sbjct: 451 VSRNSDLSASPSIQKGNALNH---AVGLGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTV 507 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIGLLAEVRDELAMNRTSR 743 +++A AS +LAQE ++SF S + G + D EL + + Sbjct: 508 AYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQ 567 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +P W +L + +K G+ NS+ MA+AP+ +I+ + + S+ P + V+ Sbjct: 568 IPSQADWIQLVEEIKKTGLANSHLMAVAPSGSISYLSSCTPSLQPVVSTVEVRKEGKLGR 627 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V ++ +N ++ Y+ ++G E PD + I A A Sbjct: 628 VYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVAAA----------- 662 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q+ +DQA SL L++ D+ + + L+ Y A+ G + YY+R R Sbjct: 663 ----QQHVDQAISLTLFMTDKATTRDLNKAYVNAFKQGCSSIYYVRIR 706 >gi|228475303|ref|ZP_04060027.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis SK119] gi|228270679|gb|EEK12093.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis SK119] Length = 701 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 180/666 (27%), Positives = 304/666 (45%), Gaps = 75/666 (11%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEK 335 +++ A + +E FA Y+ Y Y L N + + + + VA+ L L + K Sbjct: 80 EIIEFAKSINFE--FA-SYMSASKFYKDYALKTN-DKSKYLEDYNQHVAIVALYLADGNK 135 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E +A +F + + +TPT N+G R +L SCFL V D L I L+ Sbjct: 136 E-QAKQFILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLS 194 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+ + + +R G I G G ++GV+P K +Q G+R GA YL Sbjct: 195 KIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNI 254 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 255 FHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVT 314 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIR 570 + +I E A+ +K +K A R+ML M+ +T G+P++ FKD N Sbjct: 315 LDDIDIEKYYDELVANPNVLK--KKKDA----REMLNMIAQTQLQSGYPYLMFKDNANKV 368 Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618 ++G + SNLCTEI +N E + CNLGS+N++ N + Sbjct: 369 HANSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMET 423 Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 K ++ T + L V D N KK+N+ ++GLG+M L I Y S Sbjct: 424 GKFRDSVHTGMDALTVVSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESE 483 Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAE 731 EA + A+ +++++I S+E+A+ERG AY F S + G + + + + Sbjct: 484 EAKDFANIFFMMMNYYSIERSMEIAKERGEAYQDFDKSDYASGKYFDFYKSQEFVPQFEK 543 Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 V++ A M + W L+++V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 544 VKELFANMQIPTSEDWKSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMP------ 597 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +V+++++R + + + + + + +AF Sbjct: 598 ---------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFN 632 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 D M LI+ S Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 633 TDQMKLIDLISTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LL 691 Query: 910 SVEKST 915 SVE+ T Sbjct: 692 SVEECT 697 >gi|125745091|ref|YP_001033968.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 2] gi|327488428|sp|Q77MS1|RIR1_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|7673150|gb|AAF66774.1|AF147806_38 ribonucleotide reductase large subunit [Gallid herpesvirus 2] gi|10180744|gb|AAG14232.1|AF243438_47 UL39 ribonucleotide reductase large subunit-like protein [Gallid herpesvirus 2] gi|148806368|gb|ABR13124.1| UL39 [Gallid herpesvirus 2] gi|194346459|gb|ACF49641.1| UL39 [synthetic construct] gi|194750452|gb|ACF94929.1| UL39 [Gallid herpesvirus 2] gi|237626302|gb|ACR02825.1| UL39 [synthetic construct] Length = 822 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 179/665 (26%), Positives = 297/665 (44%), Gaps = 83/665 (12%) Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339 LGLQ + Y+ Y + + + E FF+R+A A + + K+ Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398 F+ L++ F+ STP + G +SC+L ++ A+ E+ + + Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDTLKAITEDVVPHLLAR 293 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G+G + NGK G++ +KV + +A N R +C YLE WH D Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343 Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L++R ++ RR ++ A W DL KR +N WTLF S L Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568 L+ +EFE YE E + ++++ + M ++ TG P+I FKD CN Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623 G + SNLCTEI + + VC+L SINL N QFD+D L Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R A ++ +++ + EK+ +R++G+G+ GF +A + + A + Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574 Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739 EF+ A++ S E ERG ++ F S + +G D LA V + Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ R+ + G+ N+ +A+ PTA A + VS+ P + N++ K +G+ Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682 Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851 N L+ EL+ L +E A I+ L+ + +I GN LK + TAF+ Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLK--YKTAFDY 740 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905 D LI+ S R ++DQ+QS+ L++ E + ++ + A+ GLKT YY + Sbjct: 741 DQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800 Query: 906 RSATS 910 R AT+ Sbjct: 801 RKATN 805 >gi|197121783|ref|YP_002133734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. K] gi|196171632|gb|ACG72605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. K] Length = 595 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 171/614 (27%), Positives = 267/614 (43%), Gaps = 76/614 (12%) Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCS 354 L +L RY L G IE P A F RVA +A E + A F +++ + + Sbjct: 9 LHVLERRYLLRDEAGQVIETPGAMFRRVAQAVAAAEAPAARSAWAERFEARMAALELLPN 68 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R G + Sbjct: 69 SPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRPRGDVV 128 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T+G + G + F++V + + QGG R+GA A L H DV EF+D ++ G Sbjct: 129 KTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLGADHPDVLEFVDAKRAAG---- 184 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + N + PD + W L P RG Sbjct: 185 -LENFNISVAAPDALFHAAARGGRWALRHP--------------------------RGG- 216 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 V R++ A L ++ + +G P + F D +P +G + N C E L Sbjct: 217 AVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQPLLPFE 276 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 C LGS+NL + D ++L + +R VR+LD+V+D+N + + + + +R Sbjct: 277 ----ACTLGSVNLARFERAGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEISRRNR 332 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MG+ L L IPY +PEA+ +A E M F+ A +AS LA ERGA+ F S Sbjct: 333 KIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFPGFASS 392 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 P + G + R RN+ IAPT T+A Sbjct: 393 A------PAGAGG----------------------RPR------RNATVTTIAPTGTLAI 418 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G S I+P + YV+ + D + R EA + ++ G + Sbjct: 419 IAGCSSGIEPLFALTYVRHALD-DAALPEEHPALGRALRAAGAEAALPAVRAA-GRARGV 476 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893 +PD + ++ ATA ++ P + + Q+ +D S + L S + + YR A+ Sbjct: 477 AGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVEDVAGAYRLAF 536 Query: 894 LMGLKTTYYLRSRS 907 +G K R S Sbjct: 537 ELGCKGITVYRDGS 550 >gi|221632943|ref|YP_002522166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermomicrobium roseum DSM 5159] gi|221155926|gb|ACM05053.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermomicrobium roseum DSM 5159] Length = 589 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/546 (27%), Positives = 246/546 (45%), Gaps = 80/546 (14%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A +FY L+++ F+ +TP L N+GT+ QL +CF+ VPD L GIFGA+++ A + + G Sbjct: 58 AEKFYELMTTLRFLPNTPALINAGTQLGQLFACFVIPVPDSLDGIFGAVRDAAKIQQTGG 117 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G ++ +R G + T S G + F+++ + + + R GA A L H D Sbjct: 118 GTGFSFSHLRPRGDLVRSTRRPSSGAVSFIRIFDVASDVIATESVRGGANMAVLRCDHPD 177 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EF+D ++N R N + + D F++ + L +P G F Sbjct: 178 VREFIDAKRNPALFSR----FNFSVLVTDDFLRAAIERREIALINPRT--------GLPF 225 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 QA+ GE L+ M+ +E G P + F D + +G Sbjct: 226 A--------QANAGE-----------LFDAMVDAAWEVGDPGLLFYDRIQRDNAVPALGP 266 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634 + ++N C E+ L+ C LGS+NL A D L + R A+R LDN Sbjct: 267 LEATNPCGEVPLHPWE----ACVLGSLNLRAFIVERGDRAFLDEAGLQESARLALRFLDN 322 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +++++ + + + +R +GLG+MGF L L IPY S E+V +AD M + A Sbjct: 323 MVEVSRYPKVEIETICRANRKVGLGIMGFADLLLALRIPYGSDESVAVADRVMGLVQAAA 382 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + AS LA+ERG + +F S + A R Sbjct: 383 VEASRRLAEERGPFPNFPISRY-------------------AARGEPPR----------- 412 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV---NSFLVNELK 811 RN+ +APT +I+ I G S I+P Y Y G+F + + L+ EL Sbjct: 413 ----RNATVTTVAPTGSISIIAGCSSGIEPLYALAY---RHVGEFVGIVEPHPLLLRELS 465 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + +D A++ +++ G IG+ +P++L+++ A EI P I + Q+ ++ A Sbjct: 466 RIGKYDPALLHEIEV-TGRIGHRTDLPEELRRLFRVATEISPEEHIRVQAAVQRHVENAV 524 Query: 872 SLNLYL 877 S + L Sbjct: 525 SKTINL 530 >gi|296330953|ref|ZP_06873428.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674471|ref|YP_003866143.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296151958|gb|EFG92832.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412715|gb|ADM37834.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] Length = 700 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 177/695 (25%), Positives = 303/695 (43%), Gaps = 101/695 (14%) Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 E Q E+ Y E +KA F + K+ D+A + + + +RY Sbjct: 60 ENQYYEEEFLSLYSFEDIKAVFKTAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERY- 118 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRH 365 RI + VA+ A +TEK K E+ NL+ + + STPT N+G R Sbjct: 119 ----EDRISI-------VALFFANGDTEKAK---EYVNLMINQEYQPSTPTFLNAGRKRR 164 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +L SCFL V D L I A+ + L+K GG+ + + +R G I ++GV+ Sbjct: 165 GELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVV 224 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 +K+ ++ +Q G+R+G+ AYL +H D+ +FLD +K + D+ R ++ I Sbjct: 225 GVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVI 284 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PD F++ ++ +F P + + + E ++ E Y++ D +K KI+ L Sbjct: 285 PDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN-EMYDKFVDNPRVKK-EKINPRKL 342 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------SEE 596 K+ + E+G+P+I F+D N H+ V SNLC+E+ S +E Sbjct: 343 LEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLCSEVLQASQVSSYTDYDVEDE 402 Query: 597 TAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652 + CNLGS+N+L N ++ + T++ A L +V + + +++N Sbjct: 403 IGLDISCNLGSLNIL-----NVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVRRANKA 457 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711 ++IGLG M L I Y SPEA + A+ ++F++I S E+A+E+G + + Sbjct: 458 MKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQY 517 Query: 712 KGSLWDQGVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 +GS + G + + I L E M+ + W +LK V GM + Sbjct: 518 EGSTYATGEYFDKYVSTDFSPKYEKIANLFE-----GMHIPTTEDWKQLKAFVAEHGMYH 572 Query: 761 SNCMAIAPTATIANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 S + IAPT +I+ + + S+ P +Y N M G N F E Sbjct: 573 SYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYPMPG-LASNNWFFYKE--- 628 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 A+++D +++ + Q+ +DQ S Sbjct: 629 -----------------------------------AYDMDMFKVVDMIATIQQHVDQGIS 653 Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 L+L D + + L+ I A G+KT YY R++ Sbjct: 654 FTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|19881199|gb|AAM00816.1|AF485080_1 large subunit ribonucleotide reductase [Staphylococcus phage Twort] Length = 705 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 162/586 (27%), Positives = 265/586 (45%), Gaps = 65/586 (11%) Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLA-KYSGGLGNDWTPVRGLG 411 +TP NSG + +LSSC+L V DD + ++ A K +GG D T +R G Sbjct: 152 ATPVYLNSGLGKRGELSSCYLFIVDDDTIESINFITDSVRQASKNAGGCAVDLTRLRPRG 211 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 ++G S+GVIPF K + NQGGKR+G+ YL +H D+ EF +K Sbjct: 212 TEVNGVPNASKGVIPFAKNIEQSVSYFNQGGKREGSAVCYLNIFHPDIHEFSSSKKINAS 271 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQA 529 D+ R ++ IP+ FM+ + ++ + F+ +V + E ++ Y+ + Sbjct: 272 DKVRLDTLSIGVTIPNKFMELLKEDKYYYTFNVYDVKQKYGFTLNEINMSEYYDIFVNDD 331 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 D + K + + + R L E+G+P++ + D N P + +G V SNLC E+T Sbjct: 332 DIRKEKYYTRDIMTDIARTQL----ESGYPYVFYIDNANDNHPLKKLGKVQMSNLCCEVT 387 Query: 590 L--------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 N + VC LGS+NL+ N + L ++ + +R L V Sbjct: 388 QLQEVSDIFPYLQSHNDTIGNDVVCTLGSLNLV-----NVVEKGLLKESVDSGIRSLSKV 442 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D+ N + +K+N RAIGLG M + L + Y S E+++IA+ I +++ Sbjct: 443 TDLMNVPFLPSVQKANDELRAIGLGAMNWHGLLAKNMLSYGSRESLDIANSLFSAIRYYS 502 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PWD 747 I +S+ELA+E G + FK S + G I E R + A ++ W+ Sbjct: 503 IKSSMELAKETGKVFKGFKESEYYTGEVFSSYIQKSHEPRTKKAKKVLEKVYIPTEEDWN 562 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L K VK GM N +APT +I+ + + SI P + + + D + F+ Sbjct: 563 SLSKDVKEYGMYNGYLNNLAPTQSISYVQNATSSIMPVPSPIENRRYGNMDTYIPMPFM- 621 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + I+ Y TA+++D +I +++ QK + Sbjct: 622 -----------SPITQFFYE-----------------SETAYKLDNKRIINTSAVIQKHV 653 Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 DQA S LY++ E KL +Y AW GLK+ YY RS++ +E Sbjct: 654 DQAISTILYVESEIPTNKLVSLYYYAWEKGLKSLYYTRSQTLKVIE 699 >gi|325103986|ref|YP_004273640.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter saltans DSM 12145] gi|324972834|gb|ADY51818.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter saltans DSM 12145] Length = 548 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 178/624 (28%), Positives = 269/624 (43%), Gaps = 116/624 (18%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 QIL Y L + E PQ R+A A K K + A F ++S S+P Sbjct: 13 QILNRGYLL-----KGETPQKAIERIA-NAAAKRLYKPELAESFIEMISKGWMSLSSPIW 66 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF VPD + GI L E M K GG + +R G + N Sbjct: 67 ANMGTERGLPISCFNVHVPDHIEGITHKLGEVIMQTKTGGGTSGYFGELRARGTAVT-DN 125 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKS G + F+K+ + ++QGG R+GA AYL+ H D++EFLD+ KN G+ + Sbjct: 126 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIKEFLDI-KNIGNP---IQN 181 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + +PD +M+ + + DR + V Sbjct: 182 LFFGVCVPDYWMQDMI---------------------------------EGDREKRDV-- 206 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595 W K+L + G P+I F D N P + +++SNLC+EI L SS + Sbjct: 207 -------WAKVLECRQQKGLPYIFFSDNVNRFKPDVYKDKEMPIYASNLCSEIALPSSRD 259 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKS 649 E+ VC L S+NL +D K +R A LD V+ H ++ A Sbjct: 260 ESFVCCLSSMNL------ELYDEWKDTGAVRLATFFLDAVMSEFIEKTEGNHYLQSANNF 313 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 HRA+GLG+MG+ S L I + S +A ++ + + + ++ AS ELA G S Sbjct: 314 AKNHRALGLGVMGWHSYLQKNMIAFESLQAKQLTNTIFKDLQEKSLKASEELANIYGEPS 373 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 KG G RN+ +A+APT Sbjct: 374 LLKG------------------------------------------YGRRNATLLAVAPT 391 Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + I G S I+P N Y G+F N +L L+++ + +E + + Sbjct: 392 TSSSAILGQTSPGIEPYSSNYYKAGLAKGNFIRKNKYLRALLEEKGIDNEETWRTIMLNH 451 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885 GS+ ++ + + K I T E+ +I AS RQK+IDQAQSLN+ + PS K + Sbjct: 452 GSVQHLTELTQEEKDIFKTFKELSQYEIILQASIRQKYIDQAQSLNINI--PSNLPIKDV 509 Query: 886 DFIYRQAWLMGLKTTYYLRSRSAT 909 + + +AW +G+KT YY RS+S + Sbjct: 510 NNLIIEAWKLGVKTLYYQRSQSVS 533 >gi|41387637|gb|AAS01681.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2] Length = 822 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 179/665 (26%), Positives = 297/665 (44%), Gaps = 83/665 (12%) Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339 LGLQ + Y+ Y + + + E FF+R+A A + + K+ Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398 F+ L++ F+ STP + G +SC+L ++ A+ E+ + + Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDALKAITEDVVPHLLAR 293 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G+G + NGK G++ +KV + +A N R +C YLE WH D Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343 Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L++R ++ RR ++ A W DL KR +N WTLF S L Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568 L+ +EFE YE E + ++++ + M ++ TG P+I FKD CN Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623 G + SNLCTEI + + VC+L SINL N QFD+D L Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R A ++ +++ + EK+ +R++G+G+ GF +A + + A + Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574 Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739 EF+ A++ S E ERG ++ F S + +G D LA V + Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ R+ + G+ N+ +A+ PTA A + VS+ P + N++ K +G+ Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682 Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851 N L+ EL+ L +E A I+ L+ + +I GN LK + TAF+ Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLK--YKTAFDY 740 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905 D LI+ S R ++DQ+QS+ L++ E + ++ + A+ GLKT YY + Sbjct: 741 DQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800 Query: 906 RSATS 910 R AT+ Sbjct: 801 RKATN 805 >gi|169838755|ref|ZP_02871943.1| ribonucleotide-diphosphate reductase subunit alpha [candidate division TM7 single-cell isolate TM7a] Length = 228 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 147/230 (63%), Gaps = 3/230 (1%) Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +NL H N++D+ +L ++R+A+R LDN+IDI ++ +A +N RA+GLG+MGF Sbjct: 1 MNLSRHLNGNEWDWRRLEDSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFT 60 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L + Y S E+ E+ D+ EFIS+HA+ S LAQE G+Y +F+GS W +G+ PID Sbjct: 61 DVLERLRLAYDSEESYELIDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPID 120 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 +I +L + RD ++ ++R S L W +L+ +VK GMRN+ MAIAPTA I +I G + +D Sbjct: 121 TIDILEKNRDIDVKISRNSSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLD 179 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 P + ++ +S ++G F VN LV ELK R LW E +L + G I N Sbjct: 180 PRFTQIFSRSTLNGKFLEVNPNLVRELKDRSLWSEVK-DELLINQGDIQN 228 >gi|262184724|ref|ZP_06044145.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] Length = 731 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 185/710 (26%), Positives = 308/710 (43%), Gaps = 96/710 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296 Y+ V R+ L +L ++ YERDF AF +L Sbjct: 61 YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFL 120 Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + Y L +GSR + + RVA E+ A + + + + F +T Sbjct: 121 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDDIMTGRFQPAT 178 Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PT N+G + ++ SCFL + D+L I ++ L+K GG+ + +R GA I Sbjct: 179 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPI 238 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 ++ GV+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ Sbjct: 239 KKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKV 298 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R ++ IPD+ + +N LFSP +++ + + + I E Y+ I Sbjct: 299 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMSIT-EYYDELVANPRI 357 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588 I A + + + FE+G+P+I F+D N +P + G ++ SNLC+EI Sbjct: 358 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 414 Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 T +S + T V CNLGS+N+ F + F T+ TAVR L V D+ N Sbjct: 415 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 469 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + N + AIGLG M L IPY EA++ + +++HA+ AS L Sbjct: 470 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 529 Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752 A E+G ++ F+ S + G + ID + + ++ E + R W LK + Sbjct: 530 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQ 589 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811 V G+ N+ A+ PT +I+ I + SI P + + K G + N+ Sbjct: 590 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 647 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +L+Y D S +A +E +I++ + + +DQ Sbjct: 648 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 678 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SL L+ + + + ++ AW G+KT YY+R R +S L+G + Sbjct: 679 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 722 >gi|293374707|ref|ZP_06621015.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter sanguinis PC909] gi|325840622|ref|ZP_08167103.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter sp. HGF1] gi|292646621|gb|EFF64623.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter sanguinis PC909] gi|325490271|gb|EGC92604.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter sp. HGF1] Length = 694 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 178/662 (26%), Positives = 293/662 (44%), Gaps = 82/662 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + F F+ ++ + Y Y L N + +E + + VA+ LA + K A EF Sbjct: 79 FSYQFKFQSFMAVSKFYKDYALKTNDHQYYLEYYEDRIVAVALYLAQGDVNK---AFEFA 135 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + +TPT N+G R ++ SCFL + D L I L + L+K GG+ Sbjct: 136 IAMIEQRYQPATPTFLNAGKARRGEMVSCFLLEMDDSLNSITYNLNTSMQLSKIGGGVAL 195 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R I + GV+P +K+ D+ VNQ G+R GA AYL +H DVEEF Sbjct: 196 NLSKLRARNESIKEIENAASGVLPVMKLLEDSFSYVNQLGQRPGAGAAYLNVFHWDVEEF 255 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYGKE 517 LD +K D++ R ++ +P F+ +N +F+P V L DL E Sbjct: 256 LDTKKINADEKSRIQTLSIGLIVPSKFINLAKENQPMYVFAPHTVFLATGKHLDDLNLDE 315 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 Y+ IK R++ L + M FE+G+P+I FK N P + +G Sbjct: 316 V------YDELVQNPAIKK-RQLDPRKLLTHIAKMQFESGYPYIVFKSNANAAHPLKEIG 368 Query: 578 VVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTI 625 + SNLCTEI T+ EE + CNLGS+N++ N + L ++ Sbjct: 369 QIKMSNLCTEIFQLQETSTITDYGEEDQIRRDISCNLGSLNIV-----NVMERRALKESV 423 Query: 626 RTAVRVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + L V + N I+KA N A+GLG M I Y S A E Sbjct: 424 YAGMDALTAVSSLSQIKNAPGIQKA---NEELNAVGLGSMNLHGYFAKNKIAYESELAKE 480 Query: 682 IADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDEL 736 +++++I S+++A E+G ++ F+ S + G ++ + ++ EL Sbjct: 481 FVRTYFMMVNYYSIERSMQIAMEKGRSFIGFEKSDYASGEYFKLYLTEDFTPKSDRVKEL 540 Query: 737 --AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 M ++ W L K VK GM ++ +AIAPT +I I + SI P Sbjct: 541 FHEMVIPTKNDWAHLAKSVKENGMYHAYRLAIAPTQSIGYIQNATASILP---------- 590 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +V+ +++R + + Y + +D + +A+ +D M Sbjct: 591 -----------VVDLVERRTYGNATTYYPMPY----------LAEDNMFFYKSAYRMDMM 629 Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 ++E ++ Q IDQ S LY+D S ++L Y A +GLK+ YY R+++ + E Sbjct: 630 KVLELIAQVQPHIDQGISTTLYVDSHTSTRELVRYYLYAHHLGLKSLYYTRTKNLSFEEC 689 Query: 914 ST 915 +T Sbjct: 690 TT 691 >gi|314936970|ref|ZP_07844317.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis subsp. hominis C80] gi|313655589|gb|EFS19334.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis subsp. hominis C80] Length = 713 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 180/666 (27%), Positives = 304/666 (45%), Gaps = 75/666 (11%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEK 335 +++ A + +E FA Y+ Y Y L N + + + + VA+ L L + K Sbjct: 92 EIIEFAKSINFE--FA-SYMSASKFYKDYALKTN-DKSKYLEDYNQHVAIVALYLADGNK 147 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E +A +F + + +TPT N+G R +L SCFL V D L I L+ Sbjct: 148 E-QAKQFILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLS 206 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+ + + +R G I G G ++GV+P K +Q G+R GA YL Sbjct: 207 KIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNI 266 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 267 FHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVT 326 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIR 570 + +I E A+ +K +K A R+ML M+ +T G+P++ FKD N Sbjct: 327 LDDIDIEKYYDELVANPNVLK--KKKDA----REMLNMIAQTQLQSGYPYLMFKDNANKV 380 Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618 ++G + SNLCTEI +N E + CNLGS+N++ N + Sbjct: 381 HANSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMET 435 Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 K ++ T + L V D N KK+N+ ++GLG+M L I Y S Sbjct: 436 GKFRDSVHTGMDALTVVSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESE 495 Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAE 731 EA + A+ +++++I S+E+A+ERG AY F S + G + + + + Sbjct: 496 EAKDFANIFFMMMNYYSIERSMEIAKERGEAYQDFDKSDYASGKYFDFYTSQEFVPQFEK 555 Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 V++ A M + W L+++V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 556 VKELFANMQIPTSEDWKSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMP------ 609 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +V+++++R + + + + + + +AF Sbjct: 610 ---------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFN 644 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 D M LI+ S Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 645 TDQMKLIDLISTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LL 703 Query: 910 SVEKST 915 SVE+ T Sbjct: 704 SVEECT 709 >gi|296111475|ref|YP_003621857.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc kimchii IMSNU 11154] gi|295833007|gb|ADG40888.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc kimchii IMSNU 11154] Length = 723 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 290/645 (44%), Gaps = 83/645 (12%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y++Y L N + + + RVAM +E+ A+ + + + +TP+ N Sbjct: 104 FYNQYALKTNDGQ-HYVETYVDRVAMNALFYADGREELALRLADEMIHQRYQPATPSFLN 162 Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G R +L SCF+ DD+ I + L+K GG+G + + +R GA + Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNIREAGAPVMAIAN 222 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + G++P +K+ D+ +Q G R+GA YL +H D+ FL +K D++ R + Sbjct: 223 SAGGIVPVMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMSFLSTKKENADEKIRVKTL 282 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536 + +PD F + V +N LFSP D+ +YGK F +I E Y+ +I Sbjct: 283 SLGLTVPDKFYELVKKNDVMYLFSP---VDVEKVYGKAFNYIDITAE-YDNMVANDQITK 338 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589 + K+ A L ++ + E+G+P+I D N +P G + SSNLC+EI Sbjct: 339 Y-KVDARTLEEEISKLQQESGYPYIINIDVANRSNPIS--GKIVSSNLCSEILQVQTPSD 395 Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643 +++ + T + CNLGSIN++ A F ++ T VR L V D N + Sbjct: 396 IDNGQQYTRLGSDVSCNLGSINIVNMMATADF-----GESVDTMVRALTYVSDTSNLDVV 450 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 K NH AIGLG MG + + Y EA++ +++++I ASV +A+ Sbjct: 451 PSIAKGNHEKHAIGLGAMGLAAYFAQNKMYYGDDEALDFTSTFFMTLNYYSIKASVAIAK 510 Query: 704 ER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDELKKRVKTI 756 ER + F S + G + D +V + A + ++ W +L+ V Sbjct: 511 ERHEKFFEFDKSTYANGSYFDKYLETDWAPKTNKVIEAFAQHHIPTKHDWVQLRDDVAKY 570 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GM N+ AIAPT +I+ + + ++ P +VN++++R Sbjct: 571 GMYNAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E MI + Y + N E +P + +A++ D +I+ + Q+ IDQ +L L+ Sbjct: 607 QEGMIGKVYYPAPGLNN-ETMP-----YYVSAYDTDMRKVIDVYAAAQEHIDQGMALTLF 660 Query: 877 LDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 + P G + L + A+ G+K+ YY+R+ Sbjct: 661 MRSTLPDGLYEWKNNRTNKMTTRDLTILRHYAFNKGIKSLYYIRT 705 >gi|104304004|gb|ABF72279.1| HSV-1 UL39-like protein [Gallid herpesvirus 2] Length = 822 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 179/665 (26%), Positives = 297/665 (44%), Gaps = 83/665 (12%) Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339 LGLQ + Y+ Y + + + E FF+R+A A + + K+ Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398 F+ L++ F+ STP + G +SC+L ++ A+ E+ + + Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDTLKAITEDVVPHLLAR 293 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G+G + NGK G++ +KV + +A N R +C YLE WH D Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343 Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L++R ++ RR ++ A W DL KR +N WTLF S L Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568 L+ +EFE YE E + ++++ + M ++ TG P+I FKD CN Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623 G + SNLCTEI + + VC+L SINL N QFD+D L Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R A ++ +++ + EK+ +R++G+G+ GF +A + + A + Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574 Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739 EF+ A++ S E ERG ++ F S + +G D LA V + Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ R+ + G+ N+ +A+ PTA A + VS+ P + N++ K +G+ Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682 Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851 N L+ EL+ L +E A I+ L+ + +I GN LK + TAF+ Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPDCHSLLK--YKTAFDY 740 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905 D LI+ S R ++DQ+QS+ L++ E + ++ + A+ GLKT YY + Sbjct: 741 DQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800 Query: 906 RSATS 910 R AT+ Sbjct: 801 RKATN 805 >gi|291455663|ref|ZP_06595053.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium breve DSM 20213] gi|291382591|gb|EFE90109.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium breve DSM 20213] Length = 731 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 183/661 (27%), Positives = 296/661 (44%), Gaps = 86/661 (13%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L R+ + PQ VA+ LA E++A+E+ + + + F Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D++ I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + Q A LFSP D+ +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 IK I A + + + FE+G+P+I F+D N +P + G V SNLC+EI Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403 Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 ++ +E+ CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAIDGG------LAYTVETAIRALTSVA 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + + +++N AIGLG M L I Y S E ++ D +++HA Sbjct: 458 EHTSIDAVPSIRRANEEGHAIGLGQMNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSR 743 AS LA E G + SF +G+ +D+ S+ A+VR EL Sbjct: 518 RASHALAVEHGHPFKSFATSDYAKPAGQGNYFDKYTDGRRSLEPRTAKVR-ELFAKYGIE 576 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798 +P W+ L+ + G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 577 IPTVSDWETLRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGR 636 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +++ N+ N+E D A+EI +++ Sbjct: 637 VYYPAAYMTND-----------------------NLEYYED--------AYEIGWKAIVD 665 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++ Sbjct: 666 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 724 Query: 918 G 918 G Sbjct: 725 G 725 >gi|213693324|ref|YP_002323910.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524785|gb|ACJ53532.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459506|dbj|BAJ70127.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 731 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 183/661 (27%), Positives = 296/661 (44%), Gaps = 86/661 (13%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L R+ + PQ VA+ LA E +A E+ + + + F Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEAQATEYADEMLAGRF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D++ I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPVMKMLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + Q A LFSP D+ +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKSFADISVSEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 IK I A + + + FE+G+P+I F+D N +P + G V SNLC+EI Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403 Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 ++ +E+ CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAMDGG------LAHTVETAIRALTSVA 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + + + +++N AIGLG M L I Y S E ++ D +++HA Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSR 743 AS LA E G A+ SF +G+ +D+ S+ A++R EL Sbjct: 518 RASHALAVEHGQAFKSFATSDYAKPAGQGNYFDKYTDGRRSLEPRTAKIR-ELFAKYGIA 576 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798 +P W+ L+ + G+ N N A+ PT +I+ I + SI P + + K G Sbjct: 577 IPTAANWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGR 636 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +++ N+ N+E D A+EI +++ Sbjct: 637 VYYPAAYMTND-----------------------NLEYYKD--------AYEIGWKAIVD 665 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++ Sbjct: 666 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 724 Query: 918 G 918 G Sbjct: 725 G 725 >gi|170017905|ref|YP_001728824.1| ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20] gi|169804762|gb|ACA83380.1| Ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20] Length = 723 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 167/645 (25%), Positives = 293/645 (45%), Gaps = 83/645 (12%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y++Y L N + + + + RVAM +E A++ + + + +TP+ N Sbjct: 104 FYNQYALKTNDGQYYV-ETYVDRVAMNALYYANGQESLALKLADEMIHQRYQPATPSFLN 162 Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G R +L SCF+ DD+ I + L+K GG+G + + VR GA + G Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNVREAGAPVMGIAN 222 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K D++ R + Sbjct: 223 SAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSIFHPDIMAFLSTKKENADEKVRVKTL 282 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536 + +PD F + V QN LFSP D+ +YG+ F +I E Y+ + I Sbjct: 283 SLGLTVPDKFYELVRQNKTMYLFSP---VDVEKVYGQSFNYVDITAE-YDNMVENDAITK 338 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589 +R + A L ++ + E+G+P+I D N +P G + SSNLC+EI Sbjct: 339 YR-VDARMLEEEISKLQQESGYPYIINIDVANRENP--IAGKIVSSNLCSEILQVQRPSD 395 Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643 +++ + T + CNLGSIN++ A FD +++ T VR L V D N + Sbjct: 396 IDNGQQYTRLGSDVSCNLGSINIVNMMATQDFD-----TSVDTMVRALTFVSDTSNLDVV 450 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 K N AIGLG MG + + Y EA++ +++++I +S+ +A+ Sbjct: 451 PSIDKGNKEKHAIGLGAMGLAAYFAQNQMYYGDEEALDFTTTFFMTLNYYSIKSSMRIAK 510 Query: 704 ER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS--RLP----WDELKKRVKTI 756 ER + F+ S + G + I + + + + LP W LK V Sbjct: 511 ERHETFYEFEKSTYANGAYFDKYINNDWQPKTQKVAQAFAPHHLPTKNDWLTLKDDVAKY 570 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GM ++ AIAPT +I+ + + ++ P +VN++++R Sbjct: 571 GMYHAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E MI + Y + + E +P + +A++ D +I+ + Q+ IDQ +L L+ Sbjct: 607 QEGMIGKVYYPAPGLSD-ETMP-----YYVSAYDTDMRKVIDVYAAAQEHIDQGMALTLF 660 Query: 877 L----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + D+ + + L + A+ G+K+ YY+R+ Sbjct: 661 MRSTLSDKLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT 705 >gi|227833717|ref|YP_002835424.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] gi|227454733|gb|ACP33486.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] Length = 744 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 185/710 (26%), Positives = 308/710 (43%), Gaps = 96/710 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296 Y+ V R+ L +L ++ YERDF AF +L Sbjct: 74 YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFL 133 Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + Y L +GSR + + RVA E+ A + + + + F +T Sbjct: 134 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDDIMTGRFQPAT 191 Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PT N+G + ++ SCFL + D+L I ++ L+K GG+ + +R GA I Sbjct: 192 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPI 251 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 ++ GV+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ Sbjct: 252 KKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKV 311 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R ++ IPD+ + +N LFSP +++ + + + I E Y+ I Sbjct: 312 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMSIT-EYYDELVANPRI 370 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588 I A + + + FE+G+P+I F+D N +P + G ++ SNLC+EI Sbjct: 371 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 427 Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 T +S + T V CNLGS+N+ F + F T+ TAVR L V D+ N Sbjct: 428 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 482 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + N + AIGLG M L IPY EA++ + +++HA+ AS L Sbjct: 483 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 542 Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752 A E+G ++ F+ S + G + ID + + ++ E + R W LK + Sbjct: 543 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQ 602 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811 V G+ N+ A+ PT +I+ I + SI P + + K G + N+ Sbjct: 603 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 660 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +L+Y D S +A +E +I++ + + +DQ Sbjct: 661 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 691 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SL L+ + + + ++ AW G+KT YY+R R +S L+G + Sbjct: 692 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 735 >gi|308183793|ref|YP_003927925.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047719|gb|ADO00262.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 636 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 178/662 (26%), Positives = 293/662 (44%), Gaps = 90/662 (13%) Query: 289 RDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD F + LG Y +Y + N + + + F RV E+ A + + Sbjct: 2 RDHHFRFRSFLGAYKFYTQYAMKTNDGQ-QFLEDFVDRVVFNALYLANGDEQLANDIADE 60 Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L S + +TPT N+G R ++ SCFL V D + I + L++ GG+G + Sbjct: 61 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDVADSMLSIGRGVNSALQLSRIGGGVGVNL 120 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G I + S GV+P +K+ D+ NQ G+R GA YL +H D+ FLD Sbjct: 121 SNLRASGDPIKQISNASSGVVPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHPDILHFLD 180 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD + + + N LFSP +V + +I E Sbjct: 181 TKKENADEKIRVKTLSLGLIVPDKYYELLKTNEPMYLFSPYDVEREYRTPFAYIDITKE- 239 Query: 525 YERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 Y A IK VF +A L +K+ + E+G+P+I D N +P G + S Sbjct: 240 YNNMAANPNIKKSVF---NARKLEQKISQLQQESGYPYILNIDTANQTNPVD--GKIIMS 294 Query: 583 NLCTEI-----------TLNSSSEETAV-CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI L+ + T + CNLGS N++ N D ++ AVR Sbjct: 295 NLCSEILQPQEPSKLDDDLSYKTIGTDISCNLGSTNIM-----NMIDSPDFGHSVEVAVR 349 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N + IGLG MG +AL I Y SPEA+E D Sbjct: 350 ALTLVTDTTDVKEVPTVKHGNELYHTIGLGAMGLHTALARHQIEYGSPEALEFTDAYFLA 409 Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQGV---FPIDSIGLLAEVRDELAMN 739 ++++++ S +A+ER ++ F GS +DQ + F S +A++ + + Sbjct: 410 LNYYSLVTSNRIARERHETFAKFDQSKYADGSYFDQYLNADFKFKSTK-VAKIFKNIKL- 467 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 S W LK+ V T G+ + N +A+AP +I+ + S S+ P Sbjct: 468 -PSVTDWKALKQAVITGGLYHRNRLAVAPNGSISYVNETSASLHP--------------- 511 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + ++QR E + + Y + N E +P + A++ID +I++ Sbjct: 512 ------ITQLVEQR---QENKVGSIFYPAPYLSN-ETLP-----YYTPAYDIDQRKIIDT 556 Query: 860 ASRRQKWIDQAQSLNLYLD----------------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + QK IDQ SL L++ + + + L+ + AW G+K+ YY+ Sbjct: 557 YAVAQKHIDQGMSLTLFMRSVLKPDLYEWKDNNNLKMTTRDLNRLRNYAWTKGIKSLYYI 616 Query: 904 RS 905 R+ Sbjct: 617 RT 618 >gi|311741269|ref|ZP_07715093.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] gi|311303439|gb|EFQ79518.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] Length = 731 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 185/710 (26%), Positives = 307/710 (43%), Gaps = 96/710 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296 Y+ V R+ L +L ++ YERDF AF +L Sbjct: 61 YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFL 120 Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + Y L +GSR + + RVA E+ A + + + + F +T Sbjct: 121 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDDIMTGRFQPAT 178 Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PT N+G + ++ SCFL + D+L I + L+K GG+ + +R GA I Sbjct: 179 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPI 238 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 ++ GV+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ Sbjct: 239 KKIENQASGVVPVMKILEDSFSYANQLGSRQGAGAVYLHAHHPDILRFLDTKRENADEKV 298 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R ++ IPD+ + +N LFSP +++ + + + I E Y+ I Sbjct: 299 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVAMSDMSIT-EYYDELVANPRI 357 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588 I A + + + FE+G+P+I F+D N +P + G ++ SNLC+EI Sbjct: 358 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 414 Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 T +S + T V CNLGS+N+ F + F T+ TAVR L V D+ N Sbjct: 415 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 469 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + N + AIGLG M L IPY EA++ + +++HA+ AS L Sbjct: 470 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 529 Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752 A E+G ++ F+ S + G + ID + + ++ E + R W LK + Sbjct: 530 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQ 589 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811 V G+ N+ A+ PT +I+ I + SI P + + K G + N+ Sbjct: 590 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 647 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +L+Y D S +A +E +I++ + + +DQ Sbjct: 648 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 678 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SL L+ + + + ++ AW G+KT YY+R R +S L+G + Sbjct: 679 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 722 >gi|282851732|ref|ZP_06261096.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus gasseri 224-1] gi|282557135|gb|EFB62733.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus gasseri 224-1] Length = 505 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 148/517 (28%), Positives = 245/517 (47%), Gaps = 75/517 (14%) Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S G+IP +K+ D+ NQ G+R+GA YL H + +FLD ++ D++ R ++ Sbjct: 5 SSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLS 64 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEI-KV 536 IPD+ + +N LFSP D+ YGK + I E Y+ + I K Sbjct: 65 LGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKE-YQNILNNPCIKKT 120 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-LNSSSE 595 F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G + SNLC+EI +N+ S Sbjct: 121 F--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPST 178 Query: 596 ET-----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI---DINCH 641 CNLGS+N+ A + DKL + +V+ L+ V D++C Sbjct: 179 YNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDCA 234 Query: 642 -TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +IEK K+N RAIGLG M L HI Y SPEAVE I++HA S + Sbjct: 235 PSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNK 291 Query: 701 LAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 LA+ GA+ FK S + D+ V P + E+ + + ++ W+EL Sbjct: 292 LAETYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIVAKYKLVIPTKEDWEELI 349 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++K G+ N+N +A+APT +I+ + + S+ P + + V ++ +N+ Sbjct: 350 TKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYKINK- 408 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 D+ + A+E+ P +I+ + QK++DQ+ Sbjct: 409 ----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQKYVDQS 440 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 SL L++ D + + L+ Y A+ + YY+R R Sbjct: 441 ISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 477 >gi|298253144|ref|ZP_06976936.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1] gi|297532539|gb|EFH71425.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1] Length = 741 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 173/633 (27%), Positives = 290/633 (45%), Gaps = 80/633 (12%) Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378 F + A +AL+ + EK A + + + + F +TPT N G + + SCFL + D Sbjct: 148 FAQRAAAVALELADGDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 207 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ I + L+K GG+ T +R LGA I +S GV+P +K+ D+ Sbjct: 208 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 267 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 268 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 327 Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP D+ YGK F +I+ E+Y+ I + I A + + + FE+ Sbjct: 328 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTIAEIQFES 383 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604 G+P+I F+D N +P + G + SNLC+EI T N+ + V CNLGS Sbjct: 384 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 441 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663 +N+ N L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 442 LNIAKAMDGN------LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 495 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718 L H+ Y S EA++ D I++HA AS LA ERG A+++FK S + + Sbjct: 496 HGFLAREHMQYGSEEALDFTDMYFMTIAYHAYKASHALAVERGHAFANFKTSAYAKPAGK 555 Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767 F + G + +VRD A + +P W++L+ + + G+ N A+ Sbjct: 556 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILSDGIYNEYLQAVP 614 Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + + K G +++ N+ Sbjct: 615 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 657 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 N++ D A+EI +I++ + + +DQ SL L+ D + + L Sbjct: 658 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 703 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + AW G+KT YY+R R ++E + ++G Sbjct: 704 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 735 >gi|73671045|ref|YP_307060.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro] gi|72398207|gb|AAZ72480.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro] Length = 561 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 160/592 (27%), Positives = 273/592 (46%), Gaps = 90/592 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVA +AL + E ++F +L+ F+ S+PTL N+GT QL++CF+ V D + Sbjct: 42 RVAEAVALTDEEY----LDFKDLMLRKVFLPSSPTLMNAGTEFGQLAACFVIPVEDKVEE 97 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF +++ A++ K GG G D++ +R G+ + + G + +K+ N+ V Q G Sbjct: 98 IFDSIKAAALIQKTGGGTGFDFSKIRPEGSSNSCGDDATSGPVAVMKLFNEATEIVKQFG 157 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R+GA L+ H D+ F+ + G+ + N + +PD FM+ V Sbjct: 158 RRRGANMGILDISHNDILSFIRSKHVEGE----LSNFNISVMVPDAFMELV--------- 204 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 E + A E + RQ D ++F +I +WR G P I Sbjct: 205 --------------EADKADEVWNRQTDVTVGRIFSEIVE-GIWR--------NGEPGIL 241 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 F D N + +G + ++N C E L CNLGSINL + + ++D L Sbjct: 242 FYDRINRDNFTPALGDISATNPCGEEPLLPFE----ACNLGSINLSLCVIDGKVNWDFLR 297 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 A+R LDN ID N + + + + + R +GLG+MG L + +PY S EA+E+ Sbjct: 298 EVAGKAIRFLDNEIDKNAYPVPEIETATKRTRKVGLGVMGLHDMLLKIGLPYDSQEALEL 357 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 A++ ME I++ +I S +LA E+G++ ++ S W+ Sbjct: 358 AEKLMEQITWASIRESRKLAVEKGSFPGYEDSTWE------------------------- 392 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTV 801 LP MRN+ A+APT TI+ + G S I+P + +Y ++ G +F + Sbjct: 393 -LP------------MRNAALTAVAPTGTISILAGCSAGIEPVFSWVYRRTQTVGREFML 439 Query: 802 VNSFLVNELKQR-DLWDEAMISDLKYHDGSIGNIER---IPDDLKKIHATAFEIDPMWLI 857 V+ F K + D + + + Y G++ ++E + ++ K++ +A +ID I Sbjct: 440 VHPFFKAHFKSKLSEADYSWLLEHVYKYGTLQDVENPELVSEEEKQLFRSALDIDWKAHI 499 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLK--TTYYLRSR 906 + + Q+ S + + +GK+ +D AW GLK T Y SR Sbjct: 500 DMQAAFQRHCHAGISKTINMPASAGKEDIDKALVYAWKQGLKGLTIYRTGSR 551 >gi|256384255|gb|ACU78825.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385088|gb|ACU79657.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455870|gb|ADH22105.1| ribonucleoside-diphosphate reductase, alpha subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 720 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 167/661 (25%), Positives = 293/661 (44%), Gaps = 69/661 (10%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 FD + ND Y + F ++G ++ Y L + + + + + RV M Sbjct: 82 FDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETYTDRVLMNALFLGNG 140 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAML 393 +A + F +TPT N+ +H + SC+L D++ I + + L Sbjct: 141 NFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQL 200 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ T +R G+ I +G S G IP +K+ D+ +Q G+R+GA Y+ Sbjct: 201 SKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYIS 260 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ LD ++ D++ R ++ IPD+ + N LFSP +V +++ Sbjct: 261 AHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMALFSPYDVQKVYNK 320 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + I + YE + K + ISA + + + FE+G+P+I F+D N R+ Sbjct: 321 PLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAH 378 Query: 574 QHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKL 621 G + SNLC+EI S++ E + CNLGS+N+ + + + Sbjct: 379 DKKGRIIMSNLCSEIVQVSTASEYSSDLSFVKTGEDICCNLGSLNIDKMMKSGK----EF 434 Query: 622 ASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + +I A+ LD V D++ +I+K NH A+GLG M L I Y SP Sbjct: 435 SDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNH---AVGLGAMNLHGFLATNKIMYDSP 491 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726 EAV+ + ++++A AS +LAQE ++SF S + G + Sbjct: 492 EAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYTKCEFDKWTPQT 551 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + E+ + + S+ W +L + +K G+ NS+ MA+APT +I+ + + S+ P Sbjct: 552 NRVKELFKDYDVQIPSQTDWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVV 611 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + V+ V ++ +N ++ Y+ ++G E D + I A Sbjct: 612 STVEVRKEGKLGRVYVPAYQIN------------FDNMGYY--AMGAYELGADPIINIVA 657 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A Q+ +DQA SL L++ D+ + + L+ Y A+ G + YY+R Sbjct: 658 AA---------------QQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRI 702 Query: 906 R 906 R Sbjct: 703 R 703 >gi|86158906|ref|YP_465691.1| ribonucleotide reductase large subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85775417|gb|ABC82254.1| ribonucleotide reductase large subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 595 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 168/613 (27%), Positives = 269/613 (43%), Gaps = 76/613 (12%) Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCST 355 +L RY L G + IE P+A F RVA +A E + A F +++ + ++ Sbjct: 10 HVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEAPAARALWAERFEARMAALELLPNS 69 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R G + Sbjct: 70 PTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRPRGDVVK 129 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T+G + G + F++V + + QGG R+GA A L H DV EF+D ++ G Sbjct: 130 TTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAAG----- 184 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 + N + PD + + W L P RG Sbjct: 185 LENFNISVAAPDALFQAAARGEPWALRHP--------------------------RGG-A 217 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V R++ A AL ++ + +G P + F D +P +G + N C E L Sbjct: 218 VVREVDAGALLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQPLLPFE- 276 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 C LGS+NL + D+++L + +R VR+LD+V+++N + + + + +R Sbjct: 277 ---ACTLGSVNLARFERGGRVDHERLGACVREGVRLLDDVLEVNVWPLPQIAEISRRNRK 333 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG+ L L IPY +PEA+ +A E M F+ A +AS LA ERGA+ F S Sbjct: 334 IGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFPGFASS- 392 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 A R P RN+ IAPT T+A I Sbjct: 393 ---------------------APARAGGRP------------RRNATVTTIAPTGTLAII 419 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S I+P + YV+ + GD + EA + ++ G + Sbjct: 420 AGCSSGIEPLFALTYVRHAL-GDAALPEEHPALGRALLAAGAEAALPAVRAA-GRARGVA 477 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWL 894 +P+ + ++ ATA ++ P + + Q+ +D S + L + + + YR A+ Sbjct: 478 GVPEAVARVFATAHDVAPEAHVRMQAAFQRHVDNGVSKTINLPRTATVEDVAGAYRLAFE 537 Query: 895 MGLKTTYYLRSRS 907 +G K R S Sbjct: 538 LGCKGITVYRDGS 550 >gi|256848139|ref|ZP_05553583.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715199|gb|EEU30176.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus coleohominis 101-4-CHN] Length = 723 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 181/689 (26%), Positives = 305/689 (44%), Gaps = 92/689 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317 Y+EEG + +E + D +Y D + F F ++ Y +Y L N + Sbjct: 67 YLEEGFIRQYRNEFI---DKLY---DYLKSKHFHFHSFMAAYKFYAQYALRTNDKEYYL- 119 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376 + + RVAM E A++ + L + + +TPT N+G R + SCF Sbjct: 120 ENYIDRVAMNALYLANGNEDLAMDLAHELINQRYQPATPTFLNTGRKRRGEFVSCFEIQT 179 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ I + L+K GG+G + T +R GA I G + GV+P +K+ D Sbjct: 180 TDNMNTIGRTINSALQLSKIGGGVGINLTNLREAGAPIKKIKGAASGVVPVMKLLEDAFS 239 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 NQ G+R+GA YL +H D+ EFL +K D++ R ++ +PD F + V + Sbjct: 240 YSNQLGQRQGAGVVYLSVFHPDIVEFLGAKKENADEKIRIKTLSLGVTVPDKFYELVEND 299 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD----RGEIKVFRKISAVALWRKMLTM 552 LFSP D+ +YG+ F AY + ++ D EI +KI+A L ++ + Sbjct: 300 EDMYLFSP---YDVERVYGEPF--AYVDITKEYDNLVANDEITK-KKINARDLEDEISKL 353 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---C 600 E+G+P+I D N +P G + SNLC+EI + + +E C Sbjct: 354 QQESGYPYIVNIDTENRANPID--GKIIMSNLCSEIAQVQKPSVVNDDQTYQELGTDVSC 411 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659 NLGS N+ N + +IR R L ++ DI N + K+ N AIGLG Sbjct: 412 NLGSTNIA-----NMMETPDFGKSIRAITRGLTHISDIENLDIVPSIKRGNARSHAIGLG 466 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718 MG L HI Y SP A+E +++ + AS E+A ER ++ F S + Sbjct: 467 AMGLHGYLAKHHIQYGSPVALEFTSVYFMLLNYWTLVASHEIAVERQETFADFAKSAYAD 526 Query: 719 GVFPIDSI----GLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 G + I G +E EL + S W +LK + G+ N+ +A+AP + Sbjct: 527 GSYFDKYITKDWGPQSEAVQELFAGIFIPSIDDWKQLKAAIMKDGIYNAYRLAVAPNGST 586 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I + S+ P ++N++++R E MI + Y + Sbjct: 587 SYIGDSTSSLQP---------------------IINKIEER---QEKMIGKIYYPAPYLS 622 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--------------- 877 N D + +A++ D +I++ + Q+ +DQ+ S+ L++ Sbjct: 623 N------DTMPYYKSAYDTDMRSVIDTYAAAQQHVDQSLSMTLFMRSTIPEGMYEWKDGR 676 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 D+ + + L+ + A+ G+K+ YY+R+ Sbjct: 677 TDKMTTRDLNILRHYAYQKGIKSIYYIRT 705 >gi|257464835|ref|ZP_05629206.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor 202] gi|257450495|gb|EEV24538.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor 202] Length = 554 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 175/591 (29%), Positives = 260/591 (43%), Gaps = 114/591 (19%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGFAEKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSGYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ N I L V W Sbjct: 169 HGDIDEWLDIH-------------TEGNPI-QLMYYGVCVGREWL--------------- 199 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 E A + Y+RQ LW K+L ETG P++ FKD N P + Sbjct: 200 -ESMKAGDPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L SSS+E+ VC L S+NLL +D+ T A VL Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLY--------FDEWKDT--DAPEVL 292 Query: 633 DNVIDI-NCHTIEKAK---------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +D+ IEK+K K HRA+GLG++G+ S L +IP+ S EA++ Sbjct: 293 TYFLDVVMSEFIEKSKEIPFLHRATKFAIRHRALGLGVLGWHSYLQANNIPFDSFEAMQK 352 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + + + + AS ELAQ G KG Sbjct: 353 NNLIFKTLQEKTLKASQELAQRFGEPELLKG----------------------------- 383 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTV 801 G RN+ M+IAPT + + I G VS S++P N YVK Sbjct: 384 -------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVY 430 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 N FL LK++ L E + + ++DGS+ ++E++ + K + T EI + +I+ A+ Sbjct: 431 KNPFLEKLLKEKGLDKEEIWESILHNDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAA 490 Query: 862 RRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +RQK+IDQ QS+NL + + + L+ +Y A +GLK+ YY S SA V Sbjct: 491 QRQKYIDQGQSINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541 >gi|56698026|ref|YP_168397.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi DSS-3] gi|56679763|gb|AAV96429.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi DSS-3] Length = 760 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 162/593 (27%), Positives = 266/593 (44%), Gaps = 92/593 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + ++ EFY L F ++ + +GT R L +CF + T+PD + Sbjct: 37 RIARDLARVEQDPDRWEREFYTALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTIPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEQFIGAKS----DPARLRMFNMSVLVTDAFMEAVKADGSW- 211 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 E+ ++ KV+ + A LW K++ ++ P Sbjct: 212 ------------------ELQFDG----------KVYHTVEARTLWNKIMQATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + +V + ++N C E L C LGS+NL A +N F Sbjct: 244 VIFIDRINAANNLNYVETIAATNPCGEQPL----PPYGACLLGSVNL-ARLVSNPFEDAA 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D + L + TAVR++DNV+D + + + R IGLG+ G AL +L + Y Sbjct: 299 ELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNKRRIGLGVTGLADALLMLGLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + ++ + I+ A ASVELA+E+GA+ F D+ LA Sbjct: 359 GSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFPLF------------DAEKYLA---- 402 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 + T R +++++ ++T G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 403 ----SGTMRAMDEDVREAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458 Query: 794 NMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + D + +V+ Q RD + +A + D + ++ P D ++ A A Sbjct: 459 VLQKDGSRTEEEVVDYAVQMWRDKFADAPLPDYFVNAQTLA-----PADHVRMQAAA--- 510 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKWID + S + E S +Y QAW +G K TTY Sbjct: 511 ------------QKWIDSSISKTINCPEDISFDAFKDVYMQAWDLGCKGCTTY 551 >gi|82778047|ref|YP_404396.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella dysenteriae Sd197] gi|309786254|ref|ZP_07680882.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1617] gi|81242195|gb|ABB62905.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella dysenteriae Sd197] gi|308925999|gb|EFP71478.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1617] Length = 616 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 158/521 (30%), Positives = 250/521 (47%), Gaps = 40/521 (7%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R + F RV M L L + + E A++ + + Sbjct: 84 FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140 Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 141 SGRFQPATPTFPNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 + D++ R ++ IPD+ +NA LFSP D+ +YGK F ++A + Sbjct: 261 RENADEKIRIKILSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + E + ++A +++++ + FE+G+P+I ++D N +P G ++ SNLC Sbjct: 318 YDELVADERIRKKYLNARDFFQRLVEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375 Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +NS+SE CNLGS+N +AH D A T+ TAVR L Sbjct: 376 SEILQVNSASEYDENLDYTCTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D+ + ++ + N AIGLG M L I Y SPEA++ + I++ Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 HA+ S+ LA+ERG ++ FK S + G + + + E+ + + Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTH 550 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 W +L+ V G+ N N A+ PT +I+ I + SI P Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHP 591 >gi|293380786|ref|ZP_06626831.1| putative ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus crispatus 214-1] gi|290922650|gb|EFD99607.1| putative ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus crispatus 214-1] Length = 516 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 143/441 (32%), Positives = 221/441 (50%), Gaps = 36/441 (8%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 L Y ++F+F ++G Y Y L N ++ + + F R M E+ A+ Sbjct: 85 LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143 Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + S F +TPT N+G R + SC+L V D++ I A+ + L+K GG+ Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R LGA I S G+IP +K+ D+ NQ G+R+GA YL H + +F Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519 LD ++ D++ R ++ IPD+ + +N LFSP D+ YGK + Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320 Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I E Y+ + I K F ISA ++ + + FE+G+P+I ++D N R+PQ+ +G Sbjct: 321 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377 Query: 579 VHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+EI T ++ +E+ + CNLGS+N+ A + DKL S + Sbjct: 378 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 433 Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +V+ L+ V D++C +IEK K+N RAIGLG M L HI Y SPEAVE Sbjct: 434 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490 Query: 683 ADESMEFISFHAISASVELAQ 703 I++HA S +LA+ Sbjct: 491 TGIFFYTIAYHAFKESNKLAE 511 >gi|84683506|ref|ZP_01011409.1| ribonucleoside-diphosphate reductase, putative [Maritimibacter alkaliphilus HTCC2654] gi|84668249|gb|EAQ14716.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales bacterium HTCC2654] Length = 758 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 161/591 (27%), Positives = 260/591 (43%), Gaps = 91/591 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E E RA EFY L F F+ + +GT R+ L +CF + T+PD + Sbjct: 37 RIADALADSEPE---RAGEFYAALEDFKFLPAGRITAGAGTARNVTLFNCFVMGTIPDSM 93 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 94 AGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVAADASGPLSFMDVWDAMCRTIMS 153 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V W Sbjct: 154 AGSRRGAMMATMRCDHPDIEDFITAKS----DAARLRMFNMSVLVTDPFMEAVKSGGAW- 208 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 ++ ++ +R + A LW K++ ++ P Sbjct: 209 ------------------DLTFDG----------TTYRTVEARDLWNKIMQATYDYAEPG 240 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + + ++N C E L C LGSINL A + F Sbjct: 241 VIFIDRINRMNNLAYCETIAATNPCGEQPL----PPYGACLLGSINL-ARLVEHPFEEAA 295 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 DYD L+ + TAVR++DNV+D + +E+ + R IGLG+ G AL +L + Y Sbjct: 296 TLDYDALSDLVTTAVRMMDNVVDASRFPLEQQAREAEAKRRIGLGVTGLADALLMLGLRY 355 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + M+ I+ A ASVELA+E+G + F + Sbjct: 356 GSDEAAAQTEVWMKAIARAAYLASVELAKEKGPFPLFDAEAY------------------ 397 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 LA + D++++ ++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 398 -LASGSLQHMD-DDVREAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 455 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D + +V+ Q +W + K+ D DL A + P Sbjct: 456 VLQKDGSRTEEEVVDYAVQ--MWRD------KFGDA----------DLPDYFVNAQTLAP 497 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 M ++ + QKW+D + S + E S + +Y +AW G K TTY Sbjct: 498 MDHVKMQAAAQKWVDSSISKTINCPEDISFEGFKDVYMEAWETGCKGCTTY 548 >gi|308173698|ref|YP_003920403.1| ribonucleoside-diphosphate reductase major subunit [Bacillus amyloliquefaciens DSM 7] gi|307606562|emb|CBI42933.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553368|gb|AEB23860.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus amyloliquefaciens TA208] gi|328911842|gb|AEB63438.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus amyloliquefaciens LL3] Length = 700 Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 172/658 (26%), Positives = 289/658 (43%), Gaps = 92/658 (13%) Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F ++ Y+ Y L N + +E + VA+ A + EK K ++ Sbjct: 85 YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDAEKAK---DYV 141 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 L+ + + STPT N+G R +L SCFL V D L I A+ + L+K GG+ Sbjct: 142 RLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +F Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K + D+ R ++ IPD F++ ++ +F P + + + E ++ Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMT- 320 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE D +K K++A L K+ + E+G+P+I F+D N HV V S Sbjct: 321 AMYEELVDNPRVKK-EKVNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFS 379 Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+E+ S EE + CNLGS+N+L N + + T++ A Sbjct: 380 NLCSEVLQASQVSAYTDYDEEDEIGLDISCNLGSLNIL-----NVMKHKSIERTVKLATD 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L +V + + +++N ++IGLG M L I Y SPEA + A+ Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737 ++F++I S ELA+E+G + ++GS + G + + I L E Sbjct: 495 VNFYSIQRSAELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFE-----G 549 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789 M+ + W ELK V GM +S + IAPT +I+ + + S+ P +Y N Sbjct: 550 MHIPTIEDWKELKAFVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 M G N F E A+ Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++D +++ + Q+ IDQ S L+L D + + L+ I A G+KT YY R++ Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|237626477|gb|ACR02999.1| UL39 [synthetic construct] Length = 822 Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 179/665 (26%), Positives = 296/665 (44%), Gaps = 83/665 (12%) Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339 LGLQ + Y+ Y + + + E FF+R+A A + + K+ Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSG 398 F+ L++ F+ STP + G +SC+L ++ A+ E+ + + Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDTLKAITEDVVPHLLAR 293 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G+G + NGK G++ +KV + +A N R +C YLE WH D Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343 Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L++R ++ RR ++ A W DL KR +N WTLF S L Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568 L+ +EFE YE E + ++++ + M ++ TG P+I FKD CN Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623 G + SNLCTEI + + VC+L SINL N QFD+D L Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R A ++ +++ + EK+ +R++G+G+ GF +A + + A + Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574 Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739 EF+ A++ S E ERG ++ F S + +G D LA V + Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ R+ + G+ N+ +A+ PTA A + VS+ P + N++ K +G+ Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682 Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851 N L+ EL+ L +E A I+ L+ + +I GN LK + TAF+ Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLK--YKTAFDY 740 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905 D LI+ S R + DQ+QS+ L++ E + ++ + A+ GLKT YY + Sbjct: 741 DQALLIDLCSDRAPFADQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800 Query: 906 RSATS 910 R AT+ Sbjct: 801 RKATN 805 >gi|297243044|ref|ZP_06926982.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD] gi|296889255|gb|EFH27989.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD] Length = 735 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 171/632 (27%), Positives = 288/632 (45%), Gaps = 78/632 (12%) Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378 F + A +AL+ + EK A+ + + + + F +TPT N G + + SCFL + D Sbjct: 142 FAQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 201 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ I + L+K GG+ T +R LGA I +S GV+P +K+ D+ Sbjct: 202 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 261 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 262 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 321 Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP D+ YGK F +I+ E+Y+ I + I A + + + FE+ Sbjct: 322 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTLAEIQFES 377 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604 G+P+I F+D N +P + G + SNLC+EI T N+ + V CNLGS Sbjct: 378 GYPYILFEDTVNRTNPIK--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 435 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663 +N+ D D L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 436 LNIA-----KAMDGD-LGASVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 489 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF----------K 712 L H+ Y S EA++ D +++HA AS LA ERG A++SF K Sbjct: 490 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFASFKTSAYAKPAGK 549 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAP 768 G+ +D+ S+ + +L +P W++L+ + G+ N A+ P Sbjct: 550 GNYFDKYTDGSRSLEPRTQAVRDLFARFNVAIPSVSDWEQLRDEILRDGIYNEYLQAVPP 609 Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + + K G +++ N+ Sbjct: 610 TGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND------------------ 651 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 N++ D A+EI +I++ + + +DQ SL L+ D + + L+ Sbjct: 652 -----NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLN 698 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+KT YY+R R ++E + ++G Sbjct: 699 KAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 729 >gi|12084868|ref|NP_073333.1| ribonucleotide reductase subunit 1 [Meleagrid herpesvirus 1] gi|11095872|gb|AAG30079.1|AF282130_42 UL39 ribonucleotide reductase large subunit [Meleagrid herpesvirus 1] gi|12025151|gb|AAG45777.1|AF291866_44 UL39 ribonucleotide reductase, large subunit [Meleagrid herpesvirus 1] Length = 820 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 182/663 (27%), Positives = 287/663 (43%), Gaps = 79/663 (11%) Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN-------LL 346 LGLQ + Y+ Y + + G + E FF+R+A A + ++ N Sbjct: 172 LGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKPLIASLTNGSANWRTAF 231 Query: 347 SSFH-------FMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAK 395 +SF F+ STP + G +SC+L TT D + +LA+ Sbjct: 232 TSFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQDTIKVITNDVVPHLLAR 291 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 G+G + N KS G++ LK+ + VA N R VC YLE W Sbjct: 292 ------------GGIGISLQHVNQKS-GLMHVLKLIDSLIVATNVNESRPTGVCVYLEPW 338 Query: 456 HIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVS 508 H D+ L +R ++ RR ++ A W DL KR +N WTLF S Sbjct: 339 HSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNGEKNVMWTLFD-SRAS 397 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L LYG +FE+ YE E++ I V +I + ++ TG P+I FKD CN Sbjct: 398 ILSKLYGDKFEVEYERLEKEG----IGV-AQIPIRDMMFAIIKSAASTGSPFILFKDACN 452 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623 G + SNLCTEI ++ VC L SINL +FD+D L Sbjct: 453 RHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVRRVNGECKFDFDALRH 512 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R A + ++D + K++ +R+IG+G+ GF +A+ L + + Sbjct: 513 AVRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAMLSLGLDLEDGAVRALN 572 Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E + A++ S E ERG + F S + QG D ++ T Sbjct: 573 KQIFELMLLEAMTVSCEFC-ERGLPPFPDFSDSYYAQGRLHFDGWD---------SVELT 622 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + W L+ R+ + G+ N+ +A+ PTA A + VS+ P + N++ K +G+ Sbjct: 623 APEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFSNMFSKVTSAGELLR 682 Query: 802 VNSFLVNELKQ--------RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NS L+ EL+Q R A+ S ++G+ LK + TAFE D Sbjct: 683 PNSQLMRELRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTRLLK--YKTAFEYDQ 740 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRS 907 LI+ + R ++DQ+QS+ L++ E + ++ + A+ GLKT YY + R Sbjct: 741 SLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAGLKTGMYYCKIRK 800 Query: 908 ATS 910 AT+ Sbjct: 801 ATN 803 >gi|72080560|ref|YP_287618.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae 7448] Length = 713 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 164/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + SC+L V D++ I A+ + L+K GG+ + +R Sbjct: 151 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD ++ Sbjct: 211 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527 D++ R ++ IP++ + N LFS V D+ +Y K F +I+ ENY + Sbjct: 271 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQ 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 EIK ISA L++ + + FE+G+P+I F+D N H V SNLC+E Sbjct: 328 MLANPEIKK-TFISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCSE 384 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 IT S+ + CNLGS+N+ + D++++ A+ V+ Sbjct: 385 ITQPSTPSRFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSRN 443 Query: 636 IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D++ +I+K NH AIGLG M L I Y S EA++ + ++F A Sbjct: 444 SDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSA 500 Query: 695 ISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP- 745 AS +LA++ G +S F+ + + G V P + +++ EL +P Sbjct: 501 FKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIPT 559 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L +++K G+ NS+ MAIAPT +I+ + + S+ P + ++ Sbjct: 560 QEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 610 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857 +G +G I + P K A+E+ P+ +I Sbjct: 611 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 645 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S QK +DQA S+ L++ D+ + + L+ Y A+ K+ YY+R R Sbjct: 646 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 695 >gi|317482332|ref|ZP_07941352.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|316916212|gb|EFV37614.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] Length = 731 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 180/660 (27%), Positives = 291/660 (44%), Gaps = 84/660 (12%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L R+ + PQ VA+ LA E +A E+ + + + F Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEAQATEYVDEMLAGRF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D++ I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + Q A LFSP D+ +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 IK I A + + + FE+G+P+I F+D N +P + G V SNLC+EI Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403 Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 ++ +E+ CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKTMDGG------LAHTVETAIRALTSVA 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + + + +++N AIGLG M L I Y S E ++ D +++HA Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744 AS LA E G ++SF S + + + + R L RT R+ Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576 Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ + G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 577 IPTAADWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E I + Y + N D+L + A+EI ++++ Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725 >gi|322692091|ref|YP_004221661.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456947|dbj|BAJ67569.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 731 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 179/660 (27%), Positives = 292/660 (44%), Gaps = 84/660 (12%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L R+ + PQ VA+ LA E++A+E+ + + + F Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D++ I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + Q A LFSP D+ +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 IK I A + + + FE+G+P+I F+D N +P + G V SNLC+EI Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403 Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 ++ +E+ CNLGS+N+ L T+ TA+R L +V Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAMDGG------LGHTVETAIRALTSVA 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + + + +++N AIGLG M L I Y S E ++ D +++HA Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744 AS LA E G ++SF S + + + + R L RT R+ Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576 Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ + G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 577 IPTAADWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E I + Y + N D+L + A+EI ++++ Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725 >gi|75758222|ref|ZP_00738347.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494276|gb|EAO57367.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 694 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 171/651 (26%), Positives = 292/651 (44%), Gaps = 70/651 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y F F+ Y+ Y Y L + +I + + + R A+ + K+A+ + N Sbjct: 77 YTHKFEFQSYMAATKFYKDYSLRSDDKKIYL-EDYEDRAAIVALYLASGNTKKALRYVNQ 135 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + ++ +TPT NSG R +L SCFL + D L I L L+K GG+ + Sbjct: 136 IMKQNYQPATPTYLNSGKARAGELVSCFLLEMDDSLNSINYNLSVAKQLSKIGGGIAINL 195 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +RG I G + GV+P +K+ D+ +NQ G+R GA AYL +H D+ EFLD Sbjct: 196 SKLRGRTEAIKGIENAASGVLPVMKLMEDSFSYINQLGQRPGAGAAYLNIFHWDLIEFLD 255 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ P F + QN LF+P V + ++ + ++ + Sbjct: 256 SKKVNADEKTRIQSLSIGLVTPRKFFQLAEQNKEMYLFAPATVYKAYGVHLDDMDLDEKY 315 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K ++A + K+ T+ E+G+P+ K N + P + +G V SNL Sbjct: 316 DELVANPMVRKRKLDLTAREMLVKIATIQLESGYPYFMNKTNANEQHPLKDLGGVKMSNL 375 Query: 585 CTEITLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 CTEI ET+V C LGS+N++ N + + + T + Sbjct: 376 CTEIF---QYMETSVINDYNIADWIKNDISCVLGSLNIV-----NVMENKDVKEAVHTGM 427 Query: 630 RVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 +L +V D +C IE A KK+N T ++GLG M L IPY S +A + A Sbjct: 428 EMLTDVTDKSC--IENAPGVKKANATLHSVGLGTMNLHGFLAKNFIPYESEDAKDFARVF 485 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSR 743 +++H+I S E+A+ERG ++ F+ S + +G + + L + + + Sbjct: 486 FAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLTTEFLPQSEKVKKLFEGIQ 545 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +P W+ L K+V+ G+ +S +AIAP + G Q+ PS + K Sbjct: 546 IPTTADWERLMKQVQRDGLYHSYRLAIAPNQS----SGYVQNATPSVMPIVDKVETRSTD 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + + L ++ + + +A+E+D M +I+ Sbjct: 602 KATTYYPMPYLSKQTFFS---------------------------YKSAYEMDQMKVIDL 634 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + Q +DQ S L++ + S + L Y A GLK+ YY R+ ++T Sbjct: 635 IAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLKSLYYTRTSNST 685 >gi|254476564|ref|ZP_05089950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ruegeria sp. R11] gi|214030807|gb|EEB71642.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ruegeria sp. R11] Length = 766 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 163/591 (27%), Positives = 261/591 (44%), Gaps = 87/591 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E +++ F+N L F ++ + +GT R L +CF + TVPD + Sbjct: 37 RIARDLARAEKDQDAWEETFFNALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 SGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F+ + D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFITAKS----DPARLRMFNMSVLVTDPFMEAVKADGSW- 211 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 E+ ++ KV++ + A LW K++ ++ P Sbjct: 212 ------------------ELIFDG----------KVYQTVQARDLWNKIMQATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + +V + ++N C E L C LGSINL A N F Sbjct: 244 VIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLLGSINL-ARLVKNPFEKES 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D + L + TAVR++DNV+D++ +E + R IGLG+ G AL +L + Y Sbjct: 299 ELDPEGLKELVATAVRMMDNVVDVSKFPLEAQAQEAQNKRRIGLGVTGLADALLMLGLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA +E + I+ A ASVELA+E+GA+ F D+ LA Sbjct: 359 GSDEAARQTEEWLHAIARAAYLASVELAKEKGAFPLF------------DAEAYLASGN- 405 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 MN ++++ ++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 406 --MMNMD-----EDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D + +V+ Q ++ E +D + D + P + K+ A A Sbjct: 459 VLQKDGSRTEEEVVDYAVQ--MYREKFGADAELPDYFVNAQTLTPAEHVKMQAAA----- 511 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKWID + S + E S +Y QAW +G K TTY Sbjct: 512 ----------QKWIDSSISKTINCPEDISFDSFKDVYMQAWDLGCKGCTTY 552 >gi|255325477|ref|ZP_05366579.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] gi|255297415|gb|EET76730.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] Length = 731 Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 185/710 (26%), Positives = 306/710 (43%), Gaps = 96/710 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296 Y+ V R+ L +L ++ YERDF AF +L Sbjct: 61 YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFL 120 Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + Y L +GSR + + RVA E+ A + + + + F +T Sbjct: 121 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDGIMTGRFQPAT 178 Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PT N+G + ++ SCFL + D+L I + L+K GG+ + +R GA I Sbjct: 179 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPI 238 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 ++ GV+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ Sbjct: 239 KKIENQASGVVPVMKILEDSFSYANQLGSRQGAGSVYLHAHHPDILRFLDTKRENADEKV 298 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R ++ IPD+ + +N LFSP +++ + + + I E Y+ I Sbjct: 299 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVAMSDMSIT-EYYDELVANPRI 357 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588 I A + + + FE+G+P+I F+D N +P + G ++ SNLC+EI Sbjct: 358 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 414 Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 T +S + T V CNLGS+N+ F + F T+ TAVR L V D+ N Sbjct: 415 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 469 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + N + AIGLG M L IPY EA++ + +++HA+ AS L Sbjct: 470 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 529 Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752 A E+G ++ F+ S + G + ID + + ++ E + R W LK Sbjct: 530 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPTTEHVKQLFHEAGVQIPQREDWLRLKNL 589 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811 V G+ N+ A+ PT +I+ I + SI P + + K G + N+ Sbjct: 590 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 647 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +L+Y D S +A +E +I++ + + +DQ Sbjct: 648 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 678 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 SL L+ + + + ++ AW G+KT YY+R R +S L+G + Sbjct: 679 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 722 >gi|228904847|ref|ZP_04068901.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] gi|228854861|gb|EEM99465.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] Length = 635 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 171/651 (26%), Positives = 292/651 (44%), Gaps = 70/651 (10%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y F F+ Y+ Y Y L + +I + + + R A+ + K+A+ + N Sbjct: 18 YTHKFEFQSYMAATKFYKDYSLRSDDKKIYL-EDYEDRAAIVALYLASGNTKKALRYVNQ 76 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + ++ +TPT NSG R +L SCFL + D L I L L+K GG+ + Sbjct: 77 IMKQNYQPATPTYLNSGKARAGELVSCFLLEMDDSLNSINYNLSVAKQLSKIGGGIAINL 136 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +RG I G + GV+P +K+ D+ +NQ G+R GA AYL +H D+ EFLD Sbjct: 137 SKLRGRTEAIKGIENAASGVLPVMKLMEDSFSYINQLGQRPGAGAAYLNIFHWDLIEFLD 196 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ P F + QN LF+P V + ++ + ++ + Sbjct: 197 SKKVNADEKTRIQSLSIGLVTPRKFFQLAEQNKEMYLFAPATVYKAYGVHLDDMDLDEKY 256 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K ++A + K+ T+ E+G+P+ K N + P + +G V SNL Sbjct: 257 DELVANPMVRKRKLDLTAREMLVKIATIQLESGYPYFMNKTNANEQHPLKDLGGVKMSNL 316 Query: 585 CTEITLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 CTEI ET+V C LGS+N++ N + + + T + Sbjct: 317 CTEIF---QYMETSVINDYNIADWIKNDISCVLGSLNIV-----NVMENKDVKEAVHTGM 368 Query: 630 RVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 +L +V D +C IE A KK+N T ++GLG M L IPY S +A + A Sbjct: 369 EMLTDVTDKSC--IENAPGVKKANATLHSVGLGTMNLHGFLAKNFIPYESEDAKDFARVF 426 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSR 743 +++H+I S E+A+ERG ++ F+ S + +G + + L + + + Sbjct: 427 FAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLTTEFLPQSEKVKKLFEGIQ 486 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +P W+ L K+V+ G+ +S +AIAP + G Q+ PS + K Sbjct: 487 IPTTADWERLMKQVQRDGLYHSYRLAIAPNQS----SGYVQNATPSVMPIVDKVETRSTD 542 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + + L ++ + + +A+E+D M +I+ Sbjct: 543 KATTYYPMPYLSKQTFFS---------------------------YKSAYEMDQMKVIDL 575 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + Q +DQ S L++ + S + L Y A GLK+ YY R+ ++T Sbjct: 576 IAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLKSLYYTRTSNST 626 >gi|144575329|gb|AAZ53595.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma hyopneumoniae 7448] Length = 720 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 164/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + SC+L V D++ I A+ + L+K GG+ + +R Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD ++ Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 277 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527 D++ R ++ IP++ + N LFS V D+ +Y K F +I+ ENY + Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQ 334 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 EIK ISA L++ + + FE+G+P+I F+D N H V SNLC+E Sbjct: 335 MLANPEIKK-TFISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCSE 391 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 IT S+ + CNLGS+N+ + D++++ A+ V+ Sbjct: 392 ITQPSTPSRFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSRN 450 Query: 636 IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D++ +I+K NH AIGLG M L I Y S EA++ + ++F A Sbjct: 451 SDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSA 507 Query: 695 ISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP- 745 AS +LA++ G +S F+ + + G V P + +++ EL +P Sbjct: 508 FKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIPT 566 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L +++K G+ NS+ MAIAPT +I+ + + S+ P + ++ Sbjct: 567 QEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 617 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857 +G +G I + P K A+E+ P+ +I Sbjct: 618 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 652 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S QK +DQA S+ L++ D+ + + L+ Y A+ K+ YY+R R Sbjct: 653 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702 >gi|308235082|ref|ZP_07665819.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella vaginalis ATCC 14018] Length = 698 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 174/633 (27%), Positives = 291/633 (45%), Gaps = 80/633 (12%) Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378 F + A +AL+ + EK A+ + + + + F +TPT N G + + SCFL + D Sbjct: 105 FAQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 164 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ I + L+K GG+ T +R LGA I +S GV+P +K+ D+ Sbjct: 165 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 224 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 225 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 284 Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP D+ YGK F +I+ E+Y+ I + I A + + + FE+ Sbjct: 285 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTLAEIQFES 340 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604 G+P+I F+D N +P + G + SNLC+EI T N+ + V CNLGS Sbjct: 341 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 398 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663 +N+ D D L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 399 LNIA-----KAMDGD-LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 452 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718 L H+ Y S EA++ D +++HA AS LA ERG A++SFK S + + Sbjct: 453 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSAYAKPAGK 512 Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767 F + G + +VRD A + +P W++L+ + G+ N A+ Sbjct: 513 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILRDGIYNEYLQAVP 571 Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + + K G +++ N+ Sbjct: 572 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 614 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 N++ D A+EI +I++ + + +DQ SL L+ D + + L Sbjct: 615 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 660 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + AW G+KT YY+R R ++E + ++G Sbjct: 661 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 692 >gi|23335915|ref|ZP_00121146.1| COG0209: Ribonucleotide reductase, alpha subunit [Bifidobacterium longum DJO10A] gi|23465252|ref|NP_695855.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum NCC2705] gi|189440324|ref|YP_001955405.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum DJO10A] gi|227547059|ref|ZP_03977108.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|296455121|ref|YP_003662265.1| ribonucleoside-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. longum JDM301] gi|312133658|ref|YP_004000997.1| nrda [Bifidobacterium longum subsp. longum BBMN68] gi|322690139|ref|YP_004209873.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. infantis 157F] gi|23325883|gb|AAN24491.1| NrdE [Bifidobacterium longum NCC2705] gi|189428759|gb|ACD98907.1| Ribonucleotide reductase alpha subunit [Bifidobacterium longum DJO10A] gi|227212476|gb|EEI80365.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517760|emb|CBK71376.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Bifidobacterium longum subsp. longum F8] gi|296184553|gb|ADH01435.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium longum subsp. longum JDM301] gi|311772920|gb|ADQ02408.1| NrdA [Bifidobacterium longum subsp. longum BBMN68] gi|320461475|dbj|BAJ72095.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. infantis 157F] Length = 731 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 179/660 (27%), Positives = 292/660 (44%), Gaps = 84/660 (12%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L R+ + PQ VA+ LA E++A+E+ + + + F Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D++ I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + Q A LFSP D+ +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 IK I A + + + FE+G+P+I F+D N +P + G V SNLC+EI Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403 Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 ++ +E+ CNLGS+N+ L T+ TA+R L +V Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAMDGG------LGHTVETAIRALTSVA 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + + + +++N AIGLG M L I Y S E ++ D +++HA Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744 AS LA E G ++SF S + + + + R L RT R+ Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576 Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ + G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 577 IPTAADWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E I + Y + N D+L + A+EI ++++ Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725 >gi|197104081|ref|YP_002129458.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum HLK1] gi|196477501|gb|ACG77029.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum HLK1] Length = 745 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 149/509 (29%), Positives = 232/509 (45%), Gaps = 71/509 (13%) Query: 296 LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 L +I +Y F +G+ +A + RVA +A E+ K +RA F + L F F+ Sbjct: 7 LAAEIWSGKYRFAQPDGAGDGSVEATWARVAEAIARAESPKLRRAWRERFEDALGDFQFL 66 Query: 353 CSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + L +GT R L +CF + +PDDL GIF +QE A+ + GG+G D++ +R Sbjct: 67 PAGRILAGAGTARTVTLFNCFVMGAIPDDLEGIFRHVQEAAVTMQQGGGVGMDFSTIRPS 126 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + G + G + F+ V + + G+R+GA+ L H D+E F+D ++ Sbjct: 127 GAPVRGVGADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKR--- 183 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D R + N + + D F++ + ++ W L D V Sbjct: 184 -DGARLRNFNLSVLVTDAFLETLERDGEWPLVF-DGV----------------------- 218 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 V R + A LWR+++ ++ P + F D N R+ H + +SN C E L Sbjct: 219 -----VHRTVRAADLWRRLMQGTYDCAEPGVIFIDRVNARNNLAHCETITASNPCGEQML 273 Query: 591 NSSSEETAVCNLGSINLL----AHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 C LGSINL A F + D D+LA+ RTAVR LDNVID++ + + Sbjct: 274 ----PPYGACLLGSINLARLVPAPFEPGAELDEDRLAALTRTAVRFLDNVIDVSRYPLPA 329 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + R IGLG+ G AL +PY + E+ +E I A AS ELA E+ Sbjct: 330 QEAEAKAKRRIGLGVTGLADALIFCGVPYGGERSAELTRRWLEVIKREAYRASAELAAEK 389 Query: 706 GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 GA+ L+D + ++ GL E R+ +A + G+RN Sbjct: 390 GAF-----PLYDPVMLETPNLKGLDPETRELIARH-----------------GLRNGCLT 427 Query: 765 AIAPTATIANICG-VSQSIDPSYQNLYVK 792 +IAPT T + + G VS I+P + Y + Sbjct: 428 SIAPTGTTSLLAGNVSSGIEPVFAFAYTR 456 >gi|144227518|gb|AAZ44306.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma hyopneumoniae J] Length = 720 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 160/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + SC+L V D++ I A+ + L+K GG+ + +R Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD ++ Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 277 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526 D++ R ++ IP++ + N LFS V D+ +Y K F I+ + Y+ Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 334 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K F ISA L++ + + FE+G+P+I F+D N H V SNLC+ Sbjct: 335 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 390 Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EIT S+ + CNLGS+N+ + D++++ A+ V+ Sbjct: 391 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSR 449 Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 D++ +I+K NH AIGLG M L I Y S EA++ + ++F Sbjct: 450 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 506 Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRT---S 742 A AS +LA++ G +S F+ + + G V P + ++++ A + + Sbjct: 507 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPT 566 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W L +++K G+ NS+ MAIAPT +I+ + + S+ P + ++ Sbjct: 567 QKDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 617 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857 +G +G I + P K A+E+ P+ +I Sbjct: 618 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 652 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S QK +DQA S+ L++ D+ + + L+ Y A+ K+ YY+R R Sbjct: 653 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702 >gi|311115216|ref|YP_003986437.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella vaginalis ATCC 14019] gi|310946710|gb|ADP39414.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella vaginalis ATCC 14019] Length = 740 Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 174/633 (27%), Positives = 291/633 (45%), Gaps = 80/633 (12%) Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378 F + A +AL+ + EK A+ + + + + F +TPT N G + + SCFL + D Sbjct: 147 FAQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 206 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ I + L+K GG+ T +R LGA I +S GV+P +K+ D+ Sbjct: 207 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 266 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 267 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 326 Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP D+ YGK F +I+ E+Y+ I + I A + + + FE+ Sbjct: 327 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTLAEIQFES 382 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604 G+P+I F+D N +P + G + SNLC+EI T N+ + V CNLGS Sbjct: 383 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 440 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663 +N+ D D L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 441 LNIA-----KAMDGD-LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 494 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718 L H+ Y S EA++ D +++HA AS LA ERG A++SFK S + + Sbjct: 495 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSAYAKPAGK 554 Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767 F + G + +VRD A + +P W++L+ + G+ N A+ Sbjct: 555 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILRDGIYNEYLQAVP 613 Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + + K G +++ N+ Sbjct: 614 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 656 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 N++ D A+EI +I++ + + +DQ SL L+ D + + L Sbjct: 657 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 702 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + AW G+KT YY+R R ++E + ++G Sbjct: 703 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 734 >gi|3183696|emb|CAA07028.1| ribonucleotide reductase large subunit [Felid herpesvirus 1] Length = 785 Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 181/666 (27%), Positives = 303/666 (45%), Gaps = 80/666 (12%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----FYNLLS 347 LGLQ + Y+ +L ++ +E FF+R+A A T + ++A+ ++ + Sbjct: 133 LGLQSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFK 192 Query: 348 SFHFMCS-------TPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSG 398 SF F S TP + G L+SC+L + + D I +++ A + G Sbjct: 193 SFFFYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRG 252 Query: 399 GLGNDWTPVRGLGAHIHGTNGK-----SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 G+G + N K ++GV+P LK+ + +A++ +R VC Y+E Sbjct: 253 GIG----------ICLQNFNKKLSKECTKGVLPLLKLLDSMTIAISDS-ERPTGVCIYVE 301 Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDE 506 WH D+ L++R D+ R ++ + W PDLF R ++ G WTLF D Sbjct: 302 PWHADIRSILNMRGMLASDEDSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFD-DA 360 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 S L LYGKEF YE E A G + + A + R + TG P++ FKD Sbjct: 361 ESHLSKLYGKEFNEEYERLE-AAGMGVDSLPIQEMAYLIVRSAIM----TGSPFLMFKDA 415 Query: 567 CNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQFDYDKLA 622 CN G + +SNLCTEI ++ VCNL SI+L L A++Q Y + Sbjct: 416 CNRHYHFDTRGDALTTSNLCTEIIQKATDTRRGVCNLISIDLPRCLRRIAHDQSLYFSIP 475 Query: 623 STIR---TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 IR TA ++ ++ E + +R++GLG+ G + L + S EA Sbjct: 476 LLIRAAYTATIFVNPMMRAGNFPTEATMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEA 535 Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 + + +E + +I AS L + + +F+ S++ +G+ P D+ + + Sbjct: 536 RRLNPQILESLLLGSIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTPLIHFK--- 592 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W +L+ + G+ NS +A+ PT + + + S+ P + NL+ K +G+ Sbjct: 593 ------KWQQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGE 646 Query: 799 FTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFE 850 N L+ +++ R+ A+IS L+ SI DL H TAFE Sbjct: 647 ILRPNLQLMRTIRRLFPRECARLAVISTLEAAQWSIRGAF---GDLGDYHPLAKFKTAFE 703 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLR 904 D LI+ + R ++DQ+QS++L++ EP+ KL + A+ GLKT YY + Sbjct: 704 YDQRQLIDMCADRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCK 763 Query: 905 SRSATS 910 + AT+ Sbjct: 764 LKKATN 769 >gi|239622881|ref|ZP_04665912.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514878|gb|EEQ54745.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 731 Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 179/660 (27%), Positives = 292/660 (44%), Gaps = 84/660 (12%) Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L R+ + PQ VA+ LA E++A+E+ + + + F Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169 Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N G + + SCFL + D++ I + L+K GG+ + +R L Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528 D++ R + IPD+ + Q A LFSP D+ +YGK F +I+ E+Y+ Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 IK I A + + + FE+G+P+I F+D N +P + G V SNLC+EI Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403 Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 ++ +E+ CNLGS+N+ L T+ TA+R L +V Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKTMDGG------LGHTVETAIRALTSVA 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + + + +++N AIGLG M L I Y S E ++ D +++HA Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744 AS LA E G ++SF S + + + + R L RT R+ Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576 Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W+ L+ + G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 577 IPTAADWETLRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E I + Y + N D+L + A+EI ++++ Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + +DQ SL L+ D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725 >gi|71893571|ref|YP_279017.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae J] Length = 713 Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 160/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + SC+L V D++ I A+ + L+K GG+ + +R Sbjct: 151 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD ++ Sbjct: 211 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526 D++ R ++ IP++ + N LFS V D+ +Y K F I+ + Y+ Sbjct: 271 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K F ISA L++ + + FE+G+P+I F+D N H V SNLC+ Sbjct: 328 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 383 Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EIT S+ + CNLGS+N+ + D++++ A+ V+ Sbjct: 384 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSR 442 Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 D++ +I+K NH AIGLG M L I Y S EA++ + ++F Sbjct: 443 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 499 Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRT---S 742 A AS +LA++ G +S F+ + + G V P + ++++ A + + Sbjct: 500 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPT 559 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W L +++K G+ NS+ MAIAPT +I+ + + S+ P + ++ Sbjct: 560 QKDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 610 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857 +G +G I + P K A+E+ P+ +I Sbjct: 611 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 645 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S QK +DQA S+ L++ D+ + + L+ Y A+ K+ YY+R R Sbjct: 646 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 695 >gi|126737397|ref|ZP_01753132.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. SK209-2-6] gi|126721982|gb|EBA18685.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. SK209-2-6] Length = 765 Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 166/609 (27%), Positives = 271/609 (44%), Gaps = 88/609 (14%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I++ + + R+A LA E + E +FY L F ++ + +GT Sbjct: 19 FKQADGTPIDVTVEDSWRRIARDLARAEQDPEAWEGKFYEALEDFKYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H D+E+F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAKS----DPARLRMFNMS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W L +G KV+ + A Sbjct: 195 VLVTDDFMEAVKADGSWEL-----------QFGG------------------KVYHTVEA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW K++ ++ P + F D N + +V + ++N C E L C L Sbjct: 226 RDLWNKIMQATYDFAEPGVIFIDRINKANNLSYVEDICATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQFD------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSIN+ A +N F+ + + + TAVR++DNV+D++ +E + R I Sbjct: 282 GSINM-ARLVSNPFEKNAGLNQEAMQELVATAVRMMDNVVDVSKFPLEAQAQEAQNKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL +L + Y S EA DE + I+ A ASVELA+E+GA+ F Sbjct: 341 GLGVTGLADALLMLGLEYGSDEAARQTDEWLHGIARAAYLASVELAKEKGAFPLF----- 395 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 D+ LA + L M+ +++++ ++T G+RN+ +IAPT TI+ Sbjct: 396 -------DADAYLAS-GNMLNMD-------EDVREAIRTHGIRNALLTSIAPTGTISLYA 440 Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G VS I+P + Y + + D + +V+ Q ++ E +D K Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGADAK---------- 488 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894 L A + P ++ + QKWID + S + E S +Y QAW Sbjct: 489 -----LPGFFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQAWD 543 Query: 895 MGLK--TTY 901 G K TTY Sbjct: 544 QGCKGCTTY 552 >gi|240950329|ref|ZP_04754599.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor NM305] gi|240295140|gb|EER45959.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor NM305] Length = 554 Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 175/591 (29%), Positives = 259/591 (43%), Gaps = 114/591 (19%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGFADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSGYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ N I L V W Sbjct: 169 HGDIDEWLDIH-------------TEGNPI-QLMYYGVCVGREWL--------------- 199 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 E A + Y+RQ LW K+L ETG P++ FKD N P + Sbjct: 200 -ESMKAGDPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L S+SEE+ VC L S+NLL +D+ T A VL Sbjct: 243 KDKNMTVHASNLCTEIMLPSNSEESFVCCLSSMNLLY--------FDEWKDT--DAPEVL 292 Query: 633 DNVIDI-NCHTIEKAK---------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +D+ IEK+K K HRA+GLG++G+ S L +IP+ S EA++ Sbjct: 293 TYFLDVVMSEFIEKSKDIPFLHRATKFAIRHRALGLGVLGWHSYLQSNNIPFDSFEAMQK 352 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + + + + AS ELAQ G KG Sbjct: 353 NNLIFKTLQEKTLKASQELAQRFGEPELLKG----------------------------- 383 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTV 801 G RN+ M+IAPT + + I G VS S++P N YVK Sbjct: 384 -------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVY 430 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 N FL LK++ L E + + + DGS+ ++E++ + K + T EI + +I+ A+ Sbjct: 431 KNPFLEKLLKEKGLDKEEIWESILHTDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAA 490 Query: 862 RRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +RQK+IDQ QS+NL + + + L+ +Y A +GLK+ YY S SA V Sbjct: 491 QRQKYIDQGQSINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541 >gi|291295356|ref|YP_003506754.1| ribonucleoside-diphosphate reductase subunit alpha [Meiothermus ruber DSM 1279] gi|290470315|gb|ADD27734.1| ribonucleoside-diphosphate reductase, alpha subunit [Meiothermus ruber DSM 1279] Length = 691 Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 166/646 (25%), Positives = 295/646 (45%), Gaps = 64/646 (9%) Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F F+ ++ + Y Y L + ++ + + F +A+ L L + + +K A + + Sbjct: 81 FRFQSFMAVSKFYKDYALKSDDKKLYLERYFERVLAVALHLGQGDVQK-AEAYVRAMMEQ 139 Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G R +L SCFL + D L I L L+K GG+ + + +R Sbjct: 140 RYQPATPTFLNAGRARRGELVSCFLLELDDSLNSIGYNLNAAMQLSKIGGGVALNLSKLR 199 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G ++GV+P K+ D +Q G+RKGA YL +H DVEEFLD +K Sbjct: 200 ARGEPIKGVAHAAKGVVPVAKLLEDAFNYADQMGQRKGAGAVYLNIFHWDVEEFLDTKKI 259 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +P F + +F+P V + + ++ YE Sbjct: 260 NADEKSRLQTLSLGLLVPQKFFDLAEAGEDFYVFAPYSVYRAFGEHLDDMDLD-RMYEAL 318 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 E+K R +SA + ++ FE+G+P+I ++ N + P + +G + SNLCTEI Sbjct: 319 VAHPEVKK-RPLSARQMLTRIAQTQFESGYPYIVYRSNANRQHPLKALGQIKMSNLCTEI 377 Query: 589 ------TLNSSSEETA------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 TL + E CNLGS+N++ N + LA ++ TA+ L V Sbjct: 378 FQLQTPTLVGDAGEVVEAGFDISCNLGSLNIV-----NVMEQQNLAESVHTAMDALTAVS 432 Query: 637 DINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D + + ++N ++GLG+M L I Y S EA + ++++++ Sbjct: 433 DASAVRQVPGVWRANQAFHSVGLGVMNLHGFLAKNQIRYESEEARDFVRSFFAAMNYYSL 492 Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDE 748 S+E+A+ERG + F+ S + G + + R E +P W Sbjct: 493 ERSMEIARERGQTFHGFEQSEYASGRY-FEKYQEDFRPRTETVRKLFEGIPLPSPADWAR 551 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK+ V+ G+ ++ +A+APTA+I+ I + SI P + +V++ G+ T + + Sbjct: 552 LKEAVEQHGLYHAYRLAVAPTASISYIQNATPSIQPIVE--HVETRTYGNATTY--YPMP 607 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L + W + +A+ ++ +I+ + Q+ +D Sbjct: 608 FLSEETYW---------------------------FYKSAYHMNMYRVIDLVAEAQQHVD 640 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 Q S L++ E S ++L +Y A GLK+ YY R+++ SVE+ Sbjct: 641 QGISTVLFVTSETSTRELARLYVYAAKKGLKSLYYTRTKN-LSVEE 685 >gi|21228932|ref|NP_634854.1| ribonucleoside-diphosphate [Methanosarcina mazei Go1] gi|20907466|gb|AAM32526.1| Ribonucleoside-diphosphate [Methanosarcina mazei Go1] Length = 553 Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 174/631 (27%), Positives = 285/631 (45%), Gaps = 104/631 (16%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 F+ L ++ L RY ++ + RVA +AL E EF +++ S F+ Sbjct: 8 FDLLAIETLKSRYLQEGEKDWEDVCK----RVAKAIALNRGE----YTEFLDIILSKAFI 59 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 S+PTL N+GT QLS+CF+ V D + IF +++ A++ K GG G +++ +R G+ Sbjct: 60 PSSPTLMNAGTPSGQLSACFVIPVEDGIEKIFDSVKTAALIQKTGGGTGFNFSKIRPDGS 119 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 G + G + +++ N+ V GKR+GA L+ H D+ F+ ++ G Sbjct: 120 VTVSGVGTASGPVALMRLFNEATEIVKHFGKRRGANMGILDISHNDIISFIRAKRTEG-- 177 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + N + + D FM + DEV N E G Sbjct: 178 --VLSNFNISVMLTDSFMSLADEG------RMDEVW---------------NTETGTKIG 214 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 EI F +I +WR G P + F D N + +G + ++N C E L Sbjct: 215 EI--FSEIVE-GIWR--------NGEPGVLFYDHINRDNFTPALGDISATNPCGEEPLLP 263 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNLGSINL + + D L +R AVR LDN ID+N + + + +K+ Sbjct: 264 FES----CNLGSINLSILVEEGKVNRDSLREAVRKAVRFLDNEIDVNVYPVPEIEKATKK 319 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R IGLG+MGF L L +PY S EA+ +A++ M I+ AI S +LA E+G + ++ Sbjct: 320 TRKIGLGVMGFHDMLLKLGLPYDSEEALRLAEKLMGQINRAAIRESEKLAAEKGPFPEYE 379 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 S+W+ FP+ RN+ AIAPT TI Sbjct: 380 NSIWE---FPV-----------------------------------RNATLTAIAPTGTI 401 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQR-DLWDEAMISDLKYHDGS 830 + + G S I+P + +Y ++ ++G +F +V+ KQ+ D + + Y G+ Sbjct: 402 SILAGCSAGIEPVFSWVYRRARIAGKEFMLVHPLFETHFKQKLSKPDYNRLLEHVYAHGT 461 Query: 831 IGNI---ERIPDDLKKIHATAFEIDPMWL----IESASRRQKWIDQAQSLNLYLD---EP 880 + +I + + ++ K + +A +I+ W I++A +R ++++N+ +D E Sbjct: 462 LQDITDSKIVSEEEKGLFRSALDIN--WKTHIDIQAAFQRHCHAGISKTINMPVDAGKED 519 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 GK L IY AW GLK R+ S V Sbjct: 520 IGKAL--IY--AWKQGLKGLTIYRTGSRQHV 546 >gi|291280756|ref|YP_003497590.1| ribonucleotide reductase, large subunit [Deferribacter desulfuricans SSM1] gi|290755458|dbj|BAI81834.1| ribonucleotide reductase, large subunit [Deferribacter desulfuricans SSM1] Length = 868 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 154/579 (26%), Positives = 269/579 (46%), Gaps = 86/579 (14%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 K+ V ++NL++ FM ++P L N+ + + S+CF+ + D + IF L+ A++ K Sbjct: 103 KKYVTYFNLMAQGIFMPNSPLLVNADSNNMCYSACFVLDIDDSMESIFETLKNTALIHKS 162 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG G +++ +R GA + T G+S G + F+++ N V QGG R+GA L H Sbjct: 163 GGGTGFNFSKLRQKGALVSSTKGESSGALSFMQIYNSATEHVKQGGVRRGANMGILNVDH 222 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+EEF+ +++ D + + N + I + F++ + + W L P+ Sbjct: 223 PDIEEFIKIKR----DNKTLTNFNISVGITNKFLEAIKNDEEWELKEPNTG--------- 269 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 KV +K+ A L+ +++ + G P + D N + +++ Sbjct: 270 ------------------KVIKKVRAKQLFDEIVKSAWICGDPGLLNIDTINKYNYLKYI 311 Query: 577 -GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAV 629 G + ++N C E L + CNLGSINL A F N FD D A + Sbjct: 312 KGNITATNPCGEQPLFPNE----ACNLGSINL-AKFVKSDAHNNAYFDIDAFAKVVEDCT 366 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD+VIDIN + + + ++ R IGLG+MGF AL + I Y S EA+ + D Sbjct: 367 HFLDDVIDINNYPLPQITEAVEETRKIGLGVMGFADALIKMGISYDSNEALTMIDSVGSV 426 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + AS++ ++ GVFP+ + LL +V+ N+ SR + + Sbjct: 427 LKEKTEEASIKYGEQY-------------GVFPL-ADKLLEKVKKLYKENKISRKEYTYI 472 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K K I RN++ IAPT TI+ I G S I+P + Y++ + G Sbjct: 473 KD--KYIKRRNASLTCIAPTGTISLIAGCSSGIEPLFSLGYIREDSFG------------ 518 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 R +W++++ + ++ IP+ +K TA +I P W ++ S+ Q++++ Sbjct: 519 --TRIVWNDSVKHFVDKNN--------IPEYVK----TAMDISPDWHLKIQSKWQEYVES 564 Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 A S + L E + ++ + IY +A + K R +S Sbjct: 565 AVSKTINLPETATEEDIANIYLKAMELNCKGITVYRDKS 603 >gi|54020061|ref|YP_115672.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae 232] gi|53987234|gb|AAV27435.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma hyopneumoniae 232] Length = 720 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 162/591 (27%), Positives = 269/591 (45%), Gaps = 81/591 (13%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + SC+L V D++ I A+ + L+K GG+ + +R Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD ++ Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 277 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526 D++ R ++ IP++ + N LFS V D+ +Y K F I+ + Y+ Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 334 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K F ISA L++ + + FE+G+P+I F+D N H V SNLC+ Sbjct: 335 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 390 Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EIT S+ + CNLGS+N+ + D++++ A+ V+ Sbjct: 391 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEQMVYYSVLALDVVSR 449 Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 D++ +I+K NH AIGLG M L I Y S EA++ + ++F Sbjct: 450 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 506 Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP 745 A AS +LA++ G +S F+ + + G V P + +++ EL +P Sbjct: 507 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIP 565 Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W L +++K G+ NS+ MAIAPT +I+ + + S+ P + ++ Sbjct: 566 TQEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK-------- 617 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWL 856 +G +G I + P K A+E+ P+ + Sbjct: 618 --------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPI 651 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 I S QK +DQA S+ L++ D+ + + L+ Y A+ K+ YY+R R Sbjct: 652 INIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702 >gi|326692190|ref|ZP_08229195.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc argentinum KCTC 3773] Length = 723 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 167/645 (25%), Positives = 294/645 (45%), Gaps = 83/645 (12%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y++Y L N + + + + RVAM E A+ + + + +TP+ N Sbjct: 104 FYNQYALKTNDGQYYV-ETYIDRVAMNALYYAAGNEALALRLADEMIHQRYQPATPSFLN 162 Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G R +L SCF+ DD+ I + L+K GG+G + + +R GA + G Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNLREAGAPVMGIAN 222 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K D++ R + Sbjct: 223 SAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKKENADEKIRVKTL 282 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536 + +PD F + V +N LFSP +D+ +YG F +I E Y+ +I Sbjct: 283 SLGLTVPDKFYELVRKNEDMYLFSP---ADVEKVYGVPFNYVDITAE-YDNMVANDQITK 338 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589 +R ++A L ++ + E+G+P+I D N +P G + SSNLC+EI Sbjct: 339 YR-LNARTLEEEISKLQQESGYPYILNVDVTNRANPI--AGKIVSSNLCSEILQVQTPSE 395 Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643 L++ + T + CNLGSIN++ A F+ +++ T VR L V D N + Sbjct: 396 LDNGQQYTRLGSDVSCNLGSINIVNMMATPDFE-----TSVDTMVRALTFVSDTSNLDVV 450 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 K N AIGLG MG + + Y +++ +++++I AS++LA+ Sbjct: 451 PSIAKGNQEKHAIGLGAMGLAAYFAQNQMYYGDEASLDFTSTFFMTLNYYSIKASMKLAK 510 Query: 704 ERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDELKKRVKTI 756 ER + F S + G + D +V D A + ++ W ELK+ V Sbjct: 511 ERQEKFFEFDKSTYADGSYFDKYLTQDWTPKTPQVADAFANHHVPTQRDWLELKENVMKY 570 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 GM ++ AIAPT +I+ + + ++ P +VN++++R Sbjct: 571 GMYHAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E MI + Y + N E +P + +A++ D +I+ + Q+ IDQ +L L+ Sbjct: 607 QEGMIGKVYYPAPGLNN-ETMP-----YYVSAYDTDMRKVIDVYAAAQEHIDQGMALTLF 660 Query: 877 L----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + ++ + + L + A+ G+K+ YY+R+ Sbjct: 661 MRSTLSTALYEWKKGRTEKMTTRDLTILRHYAFNKGIKSLYYVRT 705 >gi|312601196|gb|ADQ90451.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae 168] Length = 720 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 162/591 (27%), Positives = 269/591 (45%), Gaps = 81/591 (13%) Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + SC+L V D++ I A+ + L+K GG+ + +R Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I ++ GVIP +K+ D+ NQ G+R+GA YL H D+ FLD ++ Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNAHHPDILAFLDTKREN 277 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526 D++ R ++ IP++ + N LFS V D+ +Y K F I+ + Y+ Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 334 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K F ISA L++ + + FE+G+P+I F+D N H V SNLC+ Sbjct: 335 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 390 Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EIT S+ + CNLGS+N+ + D++++ A+ V+ Sbjct: 391 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEQMVYYSVLALDVVSR 449 Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 D++ +I+K NH AIGLG M L I Y S EA++ + ++F Sbjct: 450 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 506 Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP 745 A AS +LA++ G +S F+ + + G V P + +++ EL +P Sbjct: 507 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIP 565 Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W L +++K G+ NS+ MAIAPT +I+ + + S+ P + ++ Sbjct: 566 TQEDWIHLIEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK-------- 617 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWL 856 +G +G I + P K A+E+ P+ + Sbjct: 618 --------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPI 651 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 I S QK +DQA S+ L++ D+ + + L+ Y A+ K+ YY+R R Sbjct: 652 INIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702 >gi|54026278|ref|YP_120520.1| ribonucleotide-diphosphate reductase subunit alpha [Nocardia farcinica IFM 10152] gi|54017786|dbj|BAD59156.1| putative ribonucleoside-diphosphate reductase alpha subunit [Nocardia farcinica IFM 10152] Length = 1102 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 161/584 (27%), Positives = 254/584 (43%), Gaps = 75/584 (12%) Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 R + +CFL + D++ I ++ L+K GG+ + +R GA I +S G Sbjct: 559 RGAVVHNCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSG 618 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 619 VIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGV 678 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKIS 541 IPD+ + +N LFSP D+ +YGK F E Y D I+ KI Sbjct: 679 VIPDITFELAKKNEDMYLFSP---YDVERIYGKPFADIDVTEKYYEMVDDKRIRK-SKIK 734 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----- 596 A ++ + + FE+G+P+I F+D N +P G + SNLC+EI S+ E Sbjct: 735 AREFFQTIAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSEFNDDL 792 Query: 597 -------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKK 648 CNLGS+N+ D A TI A+R L V D + ++ ++ Sbjct: 793 SYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQ 847 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 N AIGLG M L I Y S E ++ + + +HA+ AS LA ERG Y Sbjct: 848 GNQQSHAIGLGQMNLHGYLARERIHYGSDEGIDFTNMYFYTVVYHALRASNRLAIERGTY 907 Query: 709 -SSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRLP----WDELKKRVKTIGMR 759 F S + G + + E + E L + R+P W ELK V G+ Sbjct: 908 FGGFPESKYASGEYFDKYTEQVWEPKTERVRQLFADAGVRIPTQDDWRELKASVMEHGIY 967 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N N A+ PT +I+ I + SI P + ++ Sbjct: 968 NQNLQAVPPTGSISYINHSTSSIHPVASKIEIRK-------------------------- 1001 Query: 820 MISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +G IG + + +D + + A+EI +I++ + + +DQ SL L Sbjct: 1002 --------EGKIGRVYYPAPYMTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTL 1053 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + D + + L+ AW G+KT YY+R R ++E + ++G Sbjct: 1054 FFKDTATTRDLNKAQIYAWRKGIKTLYYIRLRQ-MALEGTEVEG 1096 >gi|283782687|ref|YP_003373441.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella vaginalis 409-05] gi|283441659|gb|ADB14125.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella vaginalis 409-05] Length = 741 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 173/633 (27%), Positives = 291/633 (45%), Gaps = 80/633 (12%) Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378 F + A +AL+ + EK A + + + + F +TPT N G + + SCFL + D Sbjct: 148 FAQRAAAVALELADGDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 207 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ I + L+K GG+ T +R LGA I +S GV+P +K+ D+ Sbjct: 208 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 267 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 268 NQLGARQGAGAVYISAHHPDIMRFLDAKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 327 Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP D+ YGK F +I+ E+Y+ I + I A + + + FE+ Sbjct: 328 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTIAEIQFES 383 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604 G+P+I F+D N +P + G + SNLC+EI T N+ + V CNLGS Sbjct: 384 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 441 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663 +N+ D D L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 442 LNIA-----KAMDGD-LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 495 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718 L H+ Y S EA++ D +++HA AS LA ERG A+++FK S + + Sbjct: 496 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFANFKTSAYAKPAGK 555 Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767 F + G + +VRD A + +P W++L+ + + G+ N A+ Sbjct: 556 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILSDGIYNEYLQAVP 614 Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + + K G +++ N+ Sbjct: 615 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 657 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 N++ D A+EI +I++ + + +DQ SL L+ D + + L Sbjct: 658 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 703 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + AW G+KT YY+R R ++E + ++G Sbjct: 704 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 735 >gi|15829012|ref|NP_326372.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma pulmonis UAB CTIP] gi|14089956|emb|CAC13714.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (RIBONUCLEOTIDE REDUCTASE) [Mycoplasma pulmonis] Length = 711 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 182/692 (26%), Positives = 312/692 (45%), Gaps = 86/692 (12%) Query: 254 EYFCRYIEEGVKARLLHESMMD-FDLVYLA--NDLKYERDFAF-EYLGLQILYDRYFLHI 309 E F + IE VK +S++D + + L NDL Y + F ++G+ Y+ Y L Sbjct: 50 ESFEKRIEFLVKNNYYEKSLIDQYTISQLKELNDLAYSYNHFFPSFMGILKFYNAYALKS 109 Query: 310 NGSRIEMPQAFFMRVAMG---LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRH 365 + E + F R M LA + EK K ++ L F +TPT N+G + Sbjct: 110 FDGK-EYLENFEDRALMNALFLANGDFEKAKAILKEIMLK---RFQPATPTFLNAGKAQR 165 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 + SC+L D++ I ++ + L+K GG+ T +R LGA I ++ G+I Sbjct: 166 GEYVSCYLIRTEDNMESISRSITTSLQLSKRGGGVAVLLTNLRELGAPIKNIQNQATGII 225 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D+ NQ G+R+GA YL H D+ +FLD ++ D++ R ++ + Sbjct: 226 PIMKILEDSFSYANQLGQRQGAGAVYLNIHHPDILQFLDSKRENADEKIRIKSLSLGLVV 285 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D+ + N LFSP ++ + + I E Y + K + I+A L Sbjct: 286 TDIAFELAKNNEKLALFSPYDIQKEYKKPMSDISITQEYYNLLKNDKIKKTY--INARKL 343 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------ 599 + + + FE+G+P++ F D N R+ H + SNLC+EI S++ E + Sbjct: 344 FTLIAELHFESGYPYLLFDDTVNRRNA--HPNRIVMSNLCSEIVQPSTASEYSADLSYTK 401 Query: 600 ------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652 CNLGS+N+ + + ++ L + A+ + D+ + +IEK NH Sbjct: 402 VGDDISCNLGSLNIAKALESGR-EFKSLVANSIFALNQVSRKADLSSAPSIEKGNNKNH- 459 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF- 711 AIGLG M L I Y S EA++ + ++++A AS EL+ G + F Sbjct: 460 --AIGLGAMNLHGFLANNEIFYNSQEALDFTNMFFYAMAYYAFEASQELSLIYGKFHGFE 517 Query: 712 KGSLWDQGVFPIDSIG----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 K D F + G + ++ ++ S+ W EL +++K G+ NS Sbjct: 518 KTKFADGSYFEKYTKGDENKWKAKTKKVQDILEKYDFYIPSQKDWIELVEKIKKTGIANS 577 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 + MAIAPT +I+ + + S+ P +V ++ R Sbjct: 578 HLMAIAPTGSISYLSSCTPSLQP---------------------VVAPVEAR-------- 608 Query: 822 SDLKYHDGSIGNIERIP------DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +G +G + +P ++ K A+E+ P+ +I+ A+ Q+ IDQA SL L Sbjct: 609 -----KEGKLGRV-YVPAYNLNSNNFKYYIEGAYEMGPIPIIDIAAEAQQHIDQAISLTL 662 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +L D+ + + L+ Y A+ G + YY+R R Sbjct: 663 FLTDKATTRDLNKAYIHAFKKGCSSIYYVRVR 694 >gi|224826411|ref|ZP_03699513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Lutiella nitroferrum 2002] gi|224601512|gb|EEG07693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Lutiella nitroferrum 2002] Length = 949 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 173/639 (27%), Positives = 290/639 (45%), Gaps = 78/639 (12%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL- 380 RVA LA E E + F++ L F+ +GT L +CF+ V D + Sbjct: 37 RVARALAGIEAEPARYEAAFFDALQR-GFIPGGRINSAAGTELKATLINCFVQPVGDAVS 95 Query: 381 ------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 GI+ AL + A + GG+G +++ +R GA + GT+ ++ G + +++V + + Sbjct: 96 ESEGGKVGIYEALLQAAETMRRGGGVGYNFSRIRPKGARVKGTHSRASGPVSYMRVFDRS 155 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G R+GA L H DVE+F+ K+ GD + N + + D FM+ V Sbjct: 156 CETVESAGSRRGAQMGVLNIEHPDVEDFIHA-KDQGD----LKNFNISVGVSDAFMQAVE 210 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + W L V D + + F + D G + V+R + A LWR+++ + Sbjct: 211 ADGPWQLVH--AVEPASDAFPEAF---------RRDDG-LWVYRTVRARELWRQIMESTY 258 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613 + P + F N + + V+ S+N C E L + C+LGSINL A + Sbjct: 259 DHAEPGVLFLSQINRDNNLSYCEVIESTNPCGEQPL----PDYGCCDLGSINLAAFVEHP 314 Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +FD+ + +R+A+R+LDNV+D+ + + ++ R +GLG G AL L Sbjct: 315 FTRRARFDFKAFETVVRSAIRMLDNVLDLTVWPLPEQQREAQAKRRVGLGFTGLGDALIL 374 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L I Y SP+ ++A + E + A ASV+LA E+GA+ F D+ L Sbjct: 375 LQIAYNSPQGRQMAAKFAETMRDAAYDASVDLAIEKGAFPLF------------DADNYL 422 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQ 787 AE + SRLP + +K R++ G+RNS+ ++IAPT TI A S I+P + Sbjct: 423 AEP------HCASRLP-EAIKARIRQHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + D + Q++ E L +G G++E++P + Sbjct: 476 WYYTRKKRMADGS-----------QQEYRVEDHAYRLYRLNG--GDVEKLP----PYFVS 518 Query: 848 AFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYL 903 A E+ + ++ + +ID A +++N+ D P + + +Y +AW GLK TTY Sbjct: 519 ALEMSALDHMQMVAAVAPYIDTAISKTVNVPADYPF-DEFEHLYLEAWKAGLKGITTYRP 577 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 S + + + L A DP+ + PS Sbjct: 578 NSVLGSVLSVEPAQAAPQDLLASQEGDPDRRIALVSTPS 616 >gi|242372964|ref|ZP_04818538.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W1] gi|242349290|gb|EES40891.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W1] Length = 698 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 174/692 (25%), Positives = 300/692 (43%), Gaps = 86/692 (12%) Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 Y F +Y EE ++ + F + K+ +D+A + + Y H+ Sbjct: 62 FYFNVFEKYTEESLREITEFAKSIHFQFASYMSASKFYKDYALKTNDKSQFLEDYNQHV- 120 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLS 369 VA+ LA +T K+A +F + + + +TPT N+G R +L Sbjct: 121 -----------AIVALYLANGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELV 166 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D L I L+K GG+ + + +R G I G G ++GV+P K Sbjct: 167 SCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAK 226 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 +Q G+R GA YL +H DVEEFLD +K D+ R ++T +P F Sbjct: 227 ALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKF 286 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 + + +F+P V + + + ++ + Y+ I+ +K A + + Sbjct: 287 FDLAKEGKDFYMFAPHTVKQEYGVTLDDIDLE-KYYDDMVANPNIEK-KKKDAREMLNTI 344 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV--- 599 ++G+P++ FKD N ++G + SNLCTEI +N E + Sbjct: 345 AQTQLQSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRD 404 Query: 600 --CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656 CNLGS+N++ N + K ++ T + L V D N KK+N ++ Sbjct: 405 ISCNLGSLNIV-----NVMESGKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSV 459 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715 GLG+M L I Y S EA + A+ +++++I S+E+A+ERG Y F+ S Sbjct: 460 GLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYYSIERSMEIAKERGERYQDFESSD 519 Query: 716 WDQGVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 + G + + + L E ++ + W L+K V+ G+ ++ + Sbjct: 520 YANGKYFEFYTSQEFEPQFEKVRQLFE-----GLDIPTSDDWKALQKEVEQYGLYHAYRL 574 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPT +I+ + + S+ P +V+++++R + + Sbjct: 575 AIAPTQSISYVQNATSSVMP---------------------IVDQIERRTYGNAETFYPM 613 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + + + + +AF D M LI+ S Q +DQ S LY++ E S + Sbjct: 614 PF----------LSPETMWYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTR 663 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 +L +Y A GLK+ YY R++ SVE+ T Sbjct: 664 ELSRLYVYAHYKGLKSLYYTRNK-LLSVEECT 694 >gi|144899535|emb|CAM76399.1| Ribonucleoside-diphosphate reductase alpha subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 772 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 169/626 (26%), Positives = 280/626 (44%), Gaps = 91/626 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + F + L+ F F+ + + +GT R + +CF + +PDD+ Sbjct: 36 RIAKALAQAEKDPALWEARFADALADFKFLPAGRIISGAGTDRRVTMFNCFVMGDIPDDM 95 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 96 AGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMCRTIMS 155 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F+D + G R N + I D FM+ V + W Sbjct: 156 AGSRRGAMMATMRCDHPDIEAFIDAKHEAG----RLRMFNLSVLITDPFMEAVKHDQAWE 211 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L ++G V++ + A ALW K++ + P Sbjct: 212 L-----------VFGG------------------VVYKSLPARALWDKIMHATYAYAEPG 242 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + +H++N C E L VC LGS+NL A ++ F Sbjct: 243 VIFIDRINRLNNLHYCETIHATNPCGEQPL----PPYGVCLLGSVNL-AKLVSDPFEAKA 297 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D DKL +R AVR++DNVID++ +++ + + R IGLG+ G AL L + Y Sbjct: 298 RLDMDKLRDLVRVAVRMMDNVIDVSRFPLDRHENEAKSKRRIGLGVTGLADALILCNARY 357 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVR 733 +A+ + +E M+ + A ASVELAQE+GA+ ++ + G ++I L A+V+ Sbjct: 358 GGKDALRLTEEWMDALRREAYLASVELAQEKGAFPLYEKEPYLAG----ETIQALDADVQ 413 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVK 792 +A + G+RN+ +IAPT TI+ VS ++P + Y + Sbjct: 414 AAIAEH-----------------GIRNALLTSIAPTGTISLFADNVSSGLEPVFSFTYTR 456 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + + D T +R E +SD Y + E P L A ++ Sbjct: 457 AVLQKDGT-----------RR----EEEVSDYAYRLFRLLKGENAP--LPPAFVDAQRLN 499 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTYYLR--SRS 907 P + + QK+ID + S + + E S + +Y QA+ G K TTY + S Sbjct: 500 PTEHVVMQAAVQKYIDSSISKTINVPESISFEDFRHVYEQAYASGCKGCTTYRPNDITGS 559 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNS 933 +V+K K D +P+ P + Sbjct: 560 VLTVKKEEPKAEDQDQPQLPLGKPAA 585 >gi|114765474|ref|ZP_01444584.1| ribonucleoside-diphosphate reductase, putative [Pelagibaca bermudensis HTCC2601] gi|114542184|gb|EAU45215.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp. HTCC2601] Length = 762 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 175/640 (27%), Positives = 283/640 (44%), Gaps = 89/640 (13%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I+M + + R+A LA E + E+ F+ L F ++ + +GT Sbjct: 19 FKEADGTPIDMSVEDSWRRIARSLASVEKDAERWEETFFEALEDFKYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R GA +HG + Sbjct: 79 RSVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAIVHGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H DVE+F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIAAKS----DSARLRMFNLS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W L + + KV+ + A Sbjct: 195 VLVTDPFMEAVKADGSWDL-----------------------------KFDGKVYHTVKA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW K++ ++ P + F D N + +V + ++N C E L C L Sbjct: 226 RDLWNKIMKATYDYAEPGVIFIDRINEANNLNYVEQIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSINL A + F D L + + TAVR++DNV+D + + + ++ R I Sbjct: 282 GSINL-ARLVTDPFTDAAEIDDAALETLVATAVRMMDNVVDASRFPLPEQEEEAQNKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL + + Y S EA ++ + I+ + ASVELA+E+GA+ F Sbjct: 341 GLGVTGLADALLMKGLRYGSEEAAAQTEDWLHRIARASYLASVELAKEKGAFPLF----- 395 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 D+ LA MN +++++ ++T G+RN+ +IAPT TI+ Sbjct: 396 -------DAEKYLASGN---MMNMD-----EDVREAIRTHGIRNALLTSIAPTGTISLYA 440 Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G VS I+P + Y + + D T +V+ Q M DLK G+ E Sbjct: 441 GNVSSGIEPVFAYAYKRKVLQKDGTRTEEEVVDYAVQ-------MWRDLK------GDAE 487 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894 +PD A +DP + + QKWID + S + E S + +Y QA+ Sbjct: 488 -LPD----YFVNAQTLDPQDHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQAYE 542 Query: 895 MGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 G K TTY + + + S K + A P +PN Sbjct: 543 TGCKGCTTYRPNDVTGSVLSVSEEKKAAPEAVATPAAEPN 582 >gi|312130785|ref|YP_003998125.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella byssophila DSM 17132] gi|311907331|gb|ADQ17772.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella byssophila DSM 17132] Length = 557 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 172/622 (27%), Positives = 270/622 (43%), Gaps = 112/622 (18%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 QIL Y L NG +E R+ A K K + F ++ S+P Sbjct: 22 QILNRGYLL--NGETVE---GAIHRICSAAA-KRLYKPELTEAFKEMIERGWMSLSSPIW 75 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF VPD + I L E M K GG + +RG G+ + N Sbjct: 76 ANMGTERGLPISCFNVHVPDSIESITHKLGEVIMQTKTGGGTSGYFGDLRGRGSAVT-DN 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKS G + F+K+ + ++QGG R+GA AYL+ H D EEFL + KN G+ + Sbjct: 135 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDCEEFLQI-KNIGNP---IQN 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + A +PD +M+ + D+ +RQ Sbjct: 191 LFFAVCVPDYWMQEMID------------GDME--------------KRQ---------- 214 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEITLNSSSE 595 LW K+L + G P+I F D N PQ H +++SNLC+EI L SS++ Sbjct: 215 ------LWAKVLESRQQKGLPYIFFTDNVNRNKPQVYKDHNMRINASNLCSEIMLPSSAD 268 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKS 649 E+ +C L S+NL +D K ++ A+ LD V+ + + + A + Sbjct: 269 ESFICCLSSMNL------ELYDEWKDTKAVKLAIFFLDAVLQEFIAKTEDNYYLAAANRF 322 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 HRA+GLG++G+ S L +P+ EA ++ E + A A+ ELA G Sbjct: 323 AKRHRALGLGVLGWHSLLQKRMLPFEGMEAKQLTSEIFRHMKTEADKATEELAMIYGEPE 382 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 KG G RN+ MAIAPT Sbjct: 383 LLKG------------------------------------------YGRRNTTTMAIAPT 400 Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + I G S I+P N + G+F N +L L+++ + +E + ++ Sbjct: 401 TSSSAILGQTSPGIEPFSSNYFKAGLAKGNFMRKNKYLKALLEEKGIDNEETWRSIMLNN 460 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 GS+ +++ + + K + T EI + +I+ AS RQK++DQ QSLN+ + E K ++ Sbjct: 461 GSVQHLKELNEYEKSVFKTFKEISQLEIIQQASIRQKYVDQGQSLNINIPAELPIKDVNR 520 Query: 888 IYRQAWLMGLKTTYYLRSRSAT 909 + +AW +G+K+ YY RS+S + Sbjct: 521 LIIEAWKLGIKSLYYQRSQSVS 542 >gi|268315916|ref|YP_003289635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodothermus marinus DSM 4252] gi|262333450|gb|ACY47247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodothermus marinus DSM 4252] Length = 620 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 164/583 (28%), Positives = 268/583 (45%), Gaps = 62/583 (10%) Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQE 389 E+E+ + A FY +L F F+ L +GTRH L +CF + + D L GIF +L+E Sbjct: 56 ESERARWAERFYQVLYGFKFLPGGRILAGAGTRHRVTLFNCFVMGIIEDSLDGIFDSLKE 115 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A+ + GG+G D++ +R G T + G + F+ + + + G R+GA+ Sbjct: 116 GALTMQQGGGVGYDFSTLRPAGTRARTTGTIASGPVSFMHIWDAMCATLLSTGARRGAMM 175 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 A L H D+E F+ + G TH N + + D FM+ V ++A W L P + Sbjct: 176 ATLRCDHPDIETFVTAKHRPG---VLTH-FNLSVQVFDEFMEAVRRDADWPLVFP--AAA 229 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 L D + I Y + +V R + A ALW ++L ++ P + F D N Sbjct: 230 LEDEGMGDGPIVYRRWTGTDGPVPCRVLRVVKARALWEQILRATYDYAEPGVLFIDTINR 289 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------DYDKLAS 623 + + + ++N C E L C+LGSINL F F D++ + Sbjct: 290 MNNLAYREHITATNPCGEQPLPPY----GACDLGSINL-TRFVRAPFTPEADLDWEGIRE 344 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ AVR+LDNVID++ + + R IGLG+ G AL +L + YAS EA ++A Sbjct: 345 TVAVAVRMLDNVIDVSGFPLPAQAEQARGTRRIGLGITGLADALIMLGLHYASEEARQLA 404 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 M+ I A S+ LA+E+G + F+ + + F Sbjct: 405 ARVMQTICHTAYRTSIALAREKGVFPFFERERYLESPF-------------------IQA 445 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVV 802 LP ++++K + T G+RNS+ ++IAPT TI+ + VS I+P + Y + + D Sbjct: 446 LP-EDIRKGIATYGIRNSHLLSIAPTGTISLLANNVSSGIEPVFAYRYTRYILGLD---- 500 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E + L D A+ + H G+ E +P+ A +DP ++ + Sbjct: 501 -----GERRAYTLTDYALRLWQRLH----GDSEMLPEAF----VDAQHLDPYDHLKMQAA 547 Query: 863 RQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901 Q ++D A +++N+ D P +Y A+ GLK TTY Sbjct: 548 LQPYVDGAISKTVNVPADTPF-NAFRQLYDWAYDHGLKGCTTY 589 >gi|194468107|ref|ZP_03074093.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus reuteri 100-23] gi|194452960|gb|EDX41858.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus reuteri 100-23] Length = 723 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 176/694 (25%), Positives = 308/694 (44%), Gaps = 88/694 (12%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317 YIEEG + E+ ++ YL ++F F ++ Y +Y L N + Sbjct: 67 YIEEGFMNKY-SEAFIEKLYEYLK-----AQNFHFHSFMAAYKFYAQYALRTNDKEYYL- 119 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376 + + RVAM E+ A++ + + + +TPT N G R + SCF Sbjct: 120 ENYIDRVAMNALYLANGDEELAMQLADEIIHQRYQPATPTFLNVGRKRRGEFVSCFALQT 179 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DD+ I + L+K GG+G + + +R GA I G + GV+P +K+ D+ Sbjct: 180 TDDMNTIGRTINSALQLSKIGGGVGINLSNLREAGAPIKKIQGAASGVVPVMKLLEDSFS 239 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 NQ G+R+GA YL +H D+ EFL +K D++ R ++ +PD F + V QN Sbjct: 240 YSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIRLKTLSLGITVPDKFYELVEQN 299 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 A LFSP D+ +YG F + Y+ +I+ +K++A L ++ + Sbjct: 300 ADMYLFSP---YDVERVYGMPFSYVDITKEYDNLVANDDIRK-KKVNARDLEDEISKLQQ 355 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNL 602 E+G+P+I D N +P G + SNLC+EI + S E + CNL Sbjct: 356 ESGYPYIINIDTENRDNPIN--GKIVMSNLCSEIAQVQVPARVNDDQSYSEMGIDISCNL 413 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 GS N+ N + +I+ +R L + D+ + + + N ++GLG M Sbjct: 414 GSTNIA-----NMMESPDFGKSIKAMMRGLTRISDVEDLDVVPTIQNGNRLAHSVGLGAM 468 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G S L HI Y SP A+E +++ ++ AS E+A+ER + F+ S + G Sbjct: 469 GLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASNEIAKERQETFHDFENSKYADGS 528 Query: 721 FPIDSI----GLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + + G ++V L + W LK++V G+ N +A+AP + + Sbjct: 529 YFEKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKNLKEKVMKDGLYNQYRLAVAPNGSTSY 588 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I + S+ P ++N +++R E MI + Y + N Sbjct: 589 INDSTASLHP---------------------IINRVEER---QEKMIGKIYYPAPYLSN- 623 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------D 878 D + +A+++D +I++ + Q+ IDQ+ S+ L++ D Sbjct: 624 -----DTMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLSMTLFMRSTIPAGLYEWKNGRTD 678 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + + + L+ + A+ G+K+ YY+R+ + S E Sbjct: 679 KMTTRDLNILRHYAYKRGIKSIYYIRTFTDDSGE 712 >gi|293389920|ref|ZP_06634254.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950454|gb|EFE00573.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter actinomycetemcomitans D7S-1] Length = 561 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 168/587 (28%), Positives = 255/587 (43%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ ++ S+P N G SCF + + D + I + E +++K Sbjct: 57 EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G++I NGKS G F K+ T ++QG RKG Y++ Sbjct: 117 LGGGTSGYFGDIRPRGSNIT-NNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+LD+ N I L V + W Sbjct: 176 HGDIEEWLDIH-------------TEGNPI-QLMYYGVCVSHEWL--------------- 206 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 E A + Y+RQ +W K+L ETG P++ FKD N P + Sbjct: 207 -EAMKAGDPYKRQ----------------IWAKLLQRKTETGIPYLFFKDNANAGRPDVY 249 Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 ++H+SNLC+EI L SS +E+ VC L S+NLL FD K L Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303 Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D V+ N +EKA K HRA+GLG++G+ S L +I + S EA++ + Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + + + AS ELA G KG Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN+ M++APT + + I G VS SI+P N YVK N F Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L LKQ+ L E + + +DGS+ ++ + + K++ T EI + +I+ A++RQK Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501 Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548 >gi|325989610|ref|YP_004249309.1| putative ribonucleoside-diphosphate reductase [Mycoplasma suis KI3806] gi|323574695|emb|CBZ40351.1| probable ribonucleoside-diphosphate reductase [Mycoplasma suis] Length = 528 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 145/541 (26%), Positives = 275/541 (50%), Gaps = 69/541 (12%) Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ + + +RG GA I + + GV+P LK+ + +Q G R+G+ AYL Sbjct: 20 LSKIGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKILENVFDYADQLGMRRGSGVAYL 79 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 +H D+ +F+D +K D++ R ++ IPD F++ T+N + +F P+ + + Sbjct: 80 NIFHFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFLQLATENKNFFIFEPNTIYQKYK 139 Query: 513 LYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + + + E Y++ AD+ +K +++SA + ++ + FE+G+P++ + D N + Sbjct: 140 VLLSDLNMN-EWYDKLAADKDILK--KELSARNVLTRIAQIQFESGYPYVIYIDNANKQH 196 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 P + +G + SNLCTEI T+ +E + CNL S+NL+ N + Sbjct: 197 PLRGLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDVSCNLASLNLV-----NLLEEK 251 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 L I ++R L V D+ +I+ A +K+N + R++GLG++ F L ++ Y Sbjct: 252 DLEKVIDISMRALTAVSDLT--SIKNAPSIRKANESFRSVGLGVLNFTGVLLKNNLAYDD 309 Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQGVFPIDSIGLL 729 PE +E AD I+++++ AS +A+E+ + +F+ GS +DQ + +S Sbjct: 310 PEVLEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANGSYFDQ--YLNNSFEPK 367 Query: 730 AEVRDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 +E EL N P W +LK++V+ G+ N+ +AIAPT +I+ + + SI P Sbjct: 368 SEKVKELLKNIKVPSPEDWAKLKEKVQQDGLYNAYRLAIAPTQSISYLQSATASIQP--- 424 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +++ ++ R L+ +M + + + + + ++ + Sbjct: 425 ------------------IISPIETR-LYGNSM---------TYFPMPFLTKENEHLYKS 456 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A++ID LI+ ++ QK IDQ S LY+ + + + L +Y A GLK+ YY+R++ Sbjct: 457 AYQIDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYAHHKGLKSLYYVRTK 516 Query: 907 S 907 + Sbjct: 517 N 517 >gi|261868067|ref|YP_003255989.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413399|gb|ACX82770.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter actinomycetemcomitans D11S-1] Length = 561 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 168/587 (28%), Positives = 255/587 (43%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ ++ S+P N G SCF + + D + I + E +++K Sbjct: 57 EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G++I NGKS G F K+ T ++QG RKG Y++ Sbjct: 117 LGGGTSGYFGDIRPRGSNIT-NNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+LD+ N I L V + W Sbjct: 176 HGDIEEWLDIH-------------TEGNPI-QLMYYGVCVSHEWL--------------- 206 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 E A + Y+RQ +W K+L ETG P++ FKD N P + Sbjct: 207 -EAMKAGDPYKRQ----------------IWAKLLQRKTETGIPYLFFKDNANADRPDVY 249 Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 ++H+SNLC+EI L SS +E+ VC L S+NLL FD K L Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303 Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D V+ N +EKA K HRA+GLG++G+ S L +I + S EA++ + Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + + + AS ELA G KG Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN+ M++APT + + I G VS SI+P N YVK N F Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L LKQ+ L E + + +DGS+ ++ + + K++ T EI + +I+ A++RQK Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501 Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548 >gi|251797996|ref|YP_003012727.1| ribonucleoside-diphosphate reductase, subunit alpha [Paenibacillus sp. JDR-2] gi|247545622|gb|ACT02641.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. JDR-2] Length = 684 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 177/658 (26%), Positives = 295/658 (44%), Gaps = 82/658 (12%) Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSS 348 F FE Y+ + Y Y + N + Q + RVA+ L L E + K A+ + Sbjct: 72 FQFESYMAISKFYKDYAMKTNDKSKYLEQ-YPDRVAIVALNLGEGDGAK-ALRIAEAMIE 129 Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 +TPT N+G +R ++ SCFL + D L I L L+K GG+ + + + Sbjct: 130 QRLQPATPTFLNAGKSRRGEMVSCFLLEMDDSLNSINYVLGTCMQLSKIGGGVAVNLSKL 189 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 RG G I G G ++GV+P LK+ D +Q G+RKG+ Y + D+ EFLD +K Sbjct: 190 RGRGEAIKGVEGAAKGVMPVLKLMEDAFSYADQMGQRKGSGAGYYNIFGWDIIEFLDCKK 249 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD--LYGKEFEIAYENY 525 D++ R ++ IP+ F + +N +F P V +D L + ++ YE Sbjct: 250 INADEKTRIKTLSIGLIIPNKFYELAAKNETLYVFGPHSVHKAYDKHLDDMDMDVMYE-- 307 Query: 526 ERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 E A+ KV +K ++A + K+ ++ E+G+P+I K N + +G V SN Sbjct: 308 ELLAND---KVVKKAVMNARDMMTKIASIQLESGYPYIMNKSNANRVHALKDIGQVKMSN 364 Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LCTEI T+N + + CNL S+N++ N + KL ++ + Sbjct: 365 LCTEIFQVQETSTINDYGMDDVIRRDISCNLASLNIV-----NVMERKKLKESVHVGIEA 419 Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D++ +K+N ++GLG M I Y S EA E A + Sbjct: 420 LTTVSDVSEIDNAPGVRKANEELHSVGLGAMNLNGFFAKNKIAYESDEAKEFASAFFMMM 479 Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAM 738 ++++I S+E+A+ERGA + F S + +G + DS+ L E M Sbjct: 480 NYYSIEKSMEIAKERGASFKDFDRSEYAKGTYFTRYIETDFRPASDSVKELFE-----GM 534 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 S W +LK++V+ G+ ++ +AIAPT +I+ I + S+ P Sbjct: 535 EIPSPQDWADLKEKVQKNGLYHAYRLAIAPTQSISYIQNSTSSVMP-------------- 580 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +V ++ R + + Y + D + +A+ ID LI+ Sbjct: 581 -------IVEHIETRTYANSTTYYPMPY----------LAQDNYFYYKSAYNIDQFKLID 623 Query: 859 SASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 Q+ +DQ S L+++ + ++L Y A GLK+ YY R++ SVE+ T Sbjct: 624 LIWEIQQHVDQGISTVLHVNSNVTTRELARFYIYAAQKGLKSLYYTRTKR-LSVEECT 680 >gi|216905874|ref|YP_002333502.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 9] gi|216410028|dbj|BAH02446.1| large subunit of ribonucleotide reductase [Equid herpesvirus 9] Length = 790 Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 181/668 (27%), Positives = 300/668 (44%), Gaps = 78/668 (11%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339 LGLQ + Y+ +L + G RIE FF+R+A E+ A Sbjct: 132 LGLQSALKYEEMYLAKMRGGRIESMGQFFLRLATTATHYTMEQPAMARVVVSGEVGWTYI 191 Query: 340 -VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396 ++ L+ + +TP + G ++SC+L V D + ++E + Sbjct: 192 FKAYFTALAGQVIIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAMLALMEEAGPILCN 251 Query: 397 SGGLGNDW----TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 GG+G TP + G S+GV+ LK+ + +A+N G+R VC Y Sbjct: 252 RGGIGMSLQRFNTPPK---------EGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYF 302 Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPD 505 E WH D+ L++R D+ R ++ W PDLF R + WTLF D Sbjct: 303 EPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYKRYLDGESGVMWTLFD-D 361 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 S L +YGKEFE YE E + + ++ + + ++ TG P++ FKD Sbjct: 362 TASHLCHMYGKEFEEEYERLELCGFGVDSIPIQDMAFIIVRSAVM-----TGSPFLMFKD 416 Query: 566 PCN--IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LA----HFAN-NQ 615 CN + + SNLCTEI ++ + VCNL SINL LA H A Sbjct: 417 ACNKHYHFDLRRKSAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPY 476 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ L TA +++++ + + K+++ +R++GLG+ G +A +L + A Sbjct: 477 FDFAALGRAAATATIFVNSMMRASTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMA 536 Query: 676 SPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPEA ++ + E + +++ AS L + + F+ S + +G P D+ Sbjct: 537 SPEARQLNKQIAERLLLNSMKASATLCRLGMQPFKGFEDSKYSRGELPFDAYP------- 589 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + +R W L+ +K G+ NS +A PT + + + S+ P Y NL+ K Sbjct: 590 --GVTLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVT 647 Query: 795 MSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGS-IGNIERIP--DDLKKIHATA 848 +G+ N L+ ++ R+ +S L+ S +G +P L K TA Sbjct: 648 ATGEVLRPNVLLMRTIRSIFPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFK-TA 706 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYY 902 FE D LI+ + R ++DQ+QS++L++ EP+ KL + A+ GLKT YY Sbjct: 707 FEYDQKTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYY 766 Query: 903 LRSRSATS 910 + + AT+ Sbjct: 767 CKIKKATN 774 >gi|46981430|gb|AAT07701.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|94482187|gb|ABF21884.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482261|gb|ABF21957.1| large subunit ribonucleotide reductase [Human herpesvirus 3] Length = 775 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 173/672 (25%), Positives = 297/672 (44%), Gaps = 83/672 (12%) Query: 292 AFEYLGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-------- 340 A LGLQ + Y+ ++L + ++E FF+R+A + + K A Sbjct: 118 ALATLGLQSALKYEDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDG 177 Query: 341 --------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGAL 387 F+ L+ + +TP + G +SC+L TV + I G Sbjct: 178 YTWTDVCRVFFTALACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITG-- 235 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + + + GG+G + ++ T +++G++ LK+ + +A+N +R Sbjct: 236 -DVGTVLQSRGGVGISLQSL-----NLIPTENQTKGLLAVLKLLDCMVMAINSDCERPTG 289 Query: 448 VCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWT 500 VC Y+E WH+D++ L R D+ R ++ W PDLF +R N WT Sbjct: 290 VCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWT 349 Query: 501 LFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE---T 556 LF D +D L L+G+ F Y ER+ +S+V + T++ T Sbjct: 350 LF--DNRADILRTLHGEAFTSTYLRLEREG--------LGVSSVPIQDIAFTIIRSAAVT 399 Query: 557 GHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G P++ FKD CN G + SNLCTEI + + + VCNL SINL + Sbjct: 400 GSPFLMFKDACNRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGP 459 Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 F+ + L T RT V L+ V+ +K+ K +R++G+G+ G + L Sbjct: 460 VSFNLNDLQLTARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFD 519 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG---SLWDQGVFPIDSIGLLA 730 S A + + E + + + S+E+ + G + FKG S + +G D ++ Sbjct: 520 LTSQPARRLNVQIAELMLYETMKTSMEMCK-IGGLAPFKGFTESKYAKGWLHQDGFSTIS 578 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + LPW L+ + G+ NS +A+ PT + A + S+ P Y N++ Sbjct: 579 YLD----------LPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMF 628 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA---- 846 K SG+ N L++EL+ +E + + + + ++ R L H Sbjct: 629 SKVTTSGELLRPNLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKY 688 Query: 847 -TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE------PSGKKLDFIYRQAWLMGLKT 899 TAFE + L++ + R +IDQ+QS+ L+++E P+ K ++ + R A+ GLKT Sbjct: 689 KTAFEYEQEDLVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIR-AYKAGLKT 747 Query: 900 -TYYLRSRSATS 910 YY + R AT+ Sbjct: 748 GMYYCKIRKATN 759 >gi|312864803|ref|ZP_07725034.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] gi|311099930|gb|EFQ58143.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] Length = 719 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 173/667 (25%), Positives = 298/667 (44%), Gaps = 89/667 (13%) Query: 281 LANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 LA DL+ E DF F+ ++ Y +Y L N + ++ RV E A Sbjct: 82 LAKDLQ-EADFHFQSFMAAYKFYQQYALKTNDGTAYL-ESIEDRVLFNALYFADGNEVLA 139 Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 + + + + +TP+ N+G +R +L SCFL V DD+ I ++ L++ G Sbjct: 140 QDLAREMIAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGG 199 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D Sbjct: 200 GVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPD 259 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + FL +K D++ R ++ +PD F + +N LFSP V KE+ Sbjct: 260 ILSFLSTKKENADEKIRVKTLSLGVTVPDKFYELARKNEDMYLFSPYTVE-------KEY 312 Query: 519 EIAY------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 + Y E Y+ I KISA L ++ + E+G+P++ D N +P Sbjct: 313 GVPYNYIDITEKYDELVANPNITK-TKISARELETEISKLQQESGYPYVVNVDTANRSNP 371 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 G + SNLC+EI +N + E + CNLGS N++ A+ F Sbjct: 372 ID--GKIVMSNLCSEILQVQKPSLINDAQEFVQMGTDISCNLGSTNIVNMMASPDF---- 425 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +I+ R L V D N + K N GLG MG S L H+ Y SPE+ Sbjct: 426 -GRSIKAMTRALTFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSFLARHHMEYGSPES 484 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLL----AEVR 733 +E D +++ + S +A+ERG ++ F+ S + G + + G A+V+ Sbjct: 485 IEFTDIYFMLMNYWTLVESNAIARERGQSFVGFEKSKYADGTYFDKYVTGQFQPKSAKVK 544 Query: 734 DELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + A + + W+ L++ V G+ + N +A+AP +I+ I VS SI P Sbjct: 545 ELFAKHFIPQAGDWEALRQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHP-------- 596 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ +++R E I + Y+ S + + IP + +A+++D Sbjct: 597 -------------IIQRIEER---QEKKIGKI-YYPASGLSTDTIP-----YYTSAYDMD 634 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLK 898 +I+ + + +DQ S+ L++ + + + L + A+ G+K Sbjct: 635 MRKVIDVYAAATEHVDQGLSMTLFMRSELPQELYEWKTESKQTTRDLSILRNYAFNKGIK 694 Query: 899 TTYYLRS 905 + YY+R+ Sbjct: 695 SIYYIRT 701 >gi|94985874|ref|YP_605238.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus geothermalis DSM 11300] gi|94556155|gb|ABF46069.1| Ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus geothermalis DSM 11300] Length = 649 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 181/667 (27%), Positives = 294/667 (44%), Gaps = 92/667 (13%) Query: 287 YERDFAFE-YLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y F F+ ++G Q Y Y +GSR +E + VA+ A E A+ Sbjct: 28 YSHRFRFQSFMGAQKFYAEYATKTPDGSRYLERYEDRMSMVALARAGGNAEL---ALTLV 84 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLG 401 + L F+ +TPTL NSG + +L+SCFL D L I A L+K GG+G Sbjct: 85 DHLVRQTFVPATPTLMNSGKANTGRLTSCFLLQDCTDSLDSIMKTQHFAADLSKNGGGVG 144 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 D + +R G + G ++G K+ + +Q G+R+GA L H D +E Sbjct: 145 IDLSNLRARGESLRHLQGVTKGAAAVAKLFDVLFRYADQAGQRQGAAVVNLNVMHPDFQE 204 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 L +K D+ R ++ IPD+FM+ V + D++ +Y + +E A Sbjct: 205 LLAGKKIATDEDARLKTLSICAVIPDVFMQAVRDD-----------KDVYQVYPRSYEQA 253 Query: 522 Y----------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 Y + I+ R++SA L +++ E+G+P++ F N + Sbjct: 254 TGRIFTDIDWDTEYASIVENPNIRK-RRVSARQLLQEIALTQGESGYPYLLFTGNANRAN 312 Query: 572 PQQHVGVVHSSNLCTEI---TLNSS----SEET-------AVCNLGSINLLAHFANNQFD 617 P +VG V +NLC+EI TL SS EE CNL S+++ N Sbjct: 313 PVPNVGTVKMTNLCSEIMQPTLPSSFHPYGEEARDEIGLDVSCNLASLHI-----GNALK 367 Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 L +R A+ +LD+V N + ++N R+IGLG MG L I Y S Sbjct: 368 SGDLGGVVRAAISMLDDVAQSTNITEVPAVARANREMRSIGLGAMGLHGHLAEHGIAYGS 427 Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PID------SIG 727 PEA+ D E + FHA AS+ELA++ G ++ F+GS + G + P + Sbjct: 428 PEALAFCDLFFEAVHFHARRASMELARDTGFVFAGFQGSRYQSGEYFAPYTEREREPAQD 487 Query: 728 LLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 L EVR L +R W +L ++ G+ +S+ MAIAPT +I+ + + S+ P Sbjct: 488 LAPEVRAALQGAWLPTREDWRQLVSDIQRYGLAHSHVMAIAPTGSISYVANATASVMPIT 547 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + + +++ G + + L ++ W + Sbjct: 548 ERVETRTSGKGK----TIYPMPGLNEQTEW---------------------------FYE 576 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+++D +I++ + Q+ +DQ S L++ + L +Y A+ GLK+ YYLR Sbjct: 577 EAYDMDMRRVIDTVATIQRHVDQGISCTLFVRSNVTTADLARLYISAYRKGLKSLYYLRQ 636 Query: 906 RSATSVE 912 R AT E Sbjct: 637 RRATVQE 643 >gi|9625894|ref|NP_040142.1| ribonucleotide reductase subunit 1 [Human herpesvirus 3] gi|132612|sp|P09248|RIR1_VZVD RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=Ribonucleotide reductase large subunit gi|259645275|sp|Q4JQV6|RIR1_VZVO RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=Ribonucleotide reductase large subunit gi|60008|emb|CAA27902.1| ribonucleotide reductase (large subunit) [Human herpesvirus 3 strain Dumas] gi|46981501|gb|AAT07777.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|66866037|gb|AAY57685.1| ORF19 [Human herpesvirus 3] gi|66866109|gb|AAY57756.1| ORF19 [Human herpesvirus 3] gi|83721827|emb|CAI44862.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|90992818|gb|ABE03037.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|91980320|gb|ABE67127.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481817|gb|ABF21519.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481891|gb|ABF21592.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481965|gb|ABF21665.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482039|gb|ABF21738.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482113|gb|ABF21811.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482335|gb|ABF22030.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482409|gb|ABF22103.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482483|gb|ABF22176.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482557|gb|ABF22249.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|111184727|gb|ABH08435.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|157965776|gb|ABW06922.1| ribonucleotide reductase large subunit [Human herpesvirus 3] Length = 775 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 173/672 (25%), Positives = 297/672 (44%), Gaps = 83/672 (12%) Query: 292 AFEYLGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-------- 340 A LGLQ + Y+ ++L + ++E FF+R+A + + K A Sbjct: 118 ALATLGLQSALKYEDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDG 177 Query: 341 --------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGAL 387 F+ L+ + +TP + G +SC+L TV + I G Sbjct: 178 YTWTDVCRVFFTALACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITG-- 235 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + + + GG+G + ++ T +++G++ LK+ + +A+N +R Sbjct: 236 -DVGTVLQSRGGVGISLQSL-----NLIPTENQTKGLLAVLKLLDCMVMAINSDCERPTG 289 Query: 448 VCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWT 500 VC Y+E WH+D++ L R D+ R ++ W PDLF +R N WT Sbjct: 290 VCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWT 349 Query: 501 LFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE---T 556 LF D +D L L+G+ F Y ER+ +S+V + T++ T Sbjct: 350 LF--DNRADILRTLHGEAFTSTYLRLEREG--------LGVSSVPIQDIAFTIIRSAAVT 399 Query: 557 GHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G P++ FKD CN G + SNLCTEI + + + VCNL SINL + Sbjct: 400 GSPFLMFKDACNRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGP 459 Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 F+ + L T RT V L+ V+ +K+ K +R++G+G+ G + L Sbjct: 460 VSFNLNDLQLTARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFD 519 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG---SLWDQGVFPIDSIGLLA 730 S A + + E + + + S+E+ + G + FKG S + +G D ++ Sbjct: 520 LTSQPARRLNVQIAELMLYETMKTSMEMCK-IGGLAPFKGFTESKYAKGWLHQDGFSTIS 578 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + LPW L+ + G+ NS +A+ PT + A + S+ P Y N++ Sbjct: 579 YLD----------LPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMF 628 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA---- 846 K SG+ N L++EL+ +E + + + + ++ R L H Sbjct: 629 SKVTTSGELLRPNLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKY 688 Query: 847 -TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE------PSGKKLDFIYRQAWLMGLKT 899 TAFE + L++ + R +IDQ+QS+ L+++E P+ K ++ + R A+ GLKT Sbjct: 689 KTAFEYEQEDLVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIR-AYKAGLKT 747 Query: 900 -TYYLRSRSATS 910 YY + R AT+ Sbjct: 748 GMYYCKIRKATN 759 >gi|56964872|ref|YP_176603.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus clausii KSM-K16] gi|56911115|dbj|BAD65642.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus clausii KSM-K16] Length = 698 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 171/661 (25%), Positives = 289/661 (43%), Gaps = 92/661 (13%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 D+ Y + F F ++ Y+ Y L N + ++ + + RVA+ ++A Sbjct: 80 DIAYNKKFRFPSFMSAFKFYNDYALKTN-DKSKILERYEDRVAIVSLFFGNGDVEKAKAL 138 Query: 343 YNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 N + S F +TPT N+G R +L SCFL + D L I A+ + L+K GG+ Sbjct: 139 VNAMISQEFQPATPTFLNAGRKRRGELVSCFLLEINDSLNDISRAVDISMQLSKLGGGVA 198 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ + Sbjct: 199 LNLSKLRAKGEAIKDVANATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHADIND 258 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-- 519 FLD RK + D+ R ++ IPD F++ + ++ LF P V + YG+ F+ Sbjct: 259 FLDTRKISADEDVRVKTLSIGVVIPDKFIELMREDKDAYLFYPHTV---YKAYGQHFDEM 315 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 E YE D ++ KI+ L++K+ + E+G+P+I F D N H+ V Sbjct: 316 DMEEMYETLVDDPRVRK-EKINPRRLFQKLAILRSESGYPYIMFADNVNKAHANGHISNV 374 Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627 SNLC+EI T EE + CNLGSIN++ N + L +T+ Sbjct: 375 KFSNLCSEILQASEVSTYTDYGEEDEIGLDISCNLGSINIM-----NVMENKSLENTVSL 429 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A L V + N ++ N ++IGLG M L HI Y S EA + A+ Sbjct: 430 ATDALTRVSESTNITNAPAVRRGNKLMKSIGLGAMNLHGYLAKQHIAYESEEARDFANTF 489 Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRD 734 +++ +I S E+A+++G Y ++GS + G + D + L + Sbjct: 490 FMAMNYFSIKRSAEIARDQGETYHGYEGSTYADGSYFKKYIENDFTPKFDKVKALFD--- 546 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SY 786 M ++ W L+ V G+ +S +AIAPT +I+ + + S+ P +Y Sbjct: 547 --GMFVPTKEDWQALQAFVAEHGLYHSYRLAIAPTGSISYVQSATASVMPIMERIEERTY 604 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 N M G N F E Sbjct: 605 GNSKTYYPMPG-LNANNWFFYKE------------------------------------- 626 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+++D +++ + Q+ +DQ S L+L D + + L+ I A G+KT YY R+ Sbjct: 627 -AYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYART 685 Query: 906 R 906 + Sbjct: 686 K 686 >gi|319401191|gb|EFV89406.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis FRI909] Length = 701 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 161/609 (26%), Positives = 273/609 (44%), Gaps = 77/609 (12%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571 + ++ + Y+ I+ +K + R+ML M+ +T G+P++ FKD N Sbjct: 316 DDIDLE-KYYDDMVANPNIEKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 369 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 ++G + SNLCTEI +N E + CNLGS+N++ N + Sbjct: 370 ANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIV-----NVMESG 424 Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K ++ T + L V D N KK+N ++GLG+M L I Y S E Sbjct: 425 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 484 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A + A+ +++++I S+E+A+ERG Y F+ S + G + E Sbjct: 485 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 540 Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + +L W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 541 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 597 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +V+++++R + + + + + + + Sbjct: 598 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 629 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 AF D M LI+ + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 630 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 Query: 907 SATSVEKST 915 SVE+ T Sbjct: 690 -LLSVEECT 697 >gi|227504051|ref|ZP_03934100.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199381|gb|EEI79429.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 745 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 155/597 (25%), Positives = 268/597 (44%), Gaps = 69/597 (11%) Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N+G + ++ SCFL + D+L I ++ L+K GG+ + Sbjct: 185 SGRFQPATPTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSN 244 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I ++ GV+P +K+ D+ NQ G R+GA YL H D+ FLD + Sbjct: 245 LRESGAPIKKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 304 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R ++ IPD+ + +N LFSP +++ + + + I E+Y+ Sbjct: 305 RENADEKVRIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVPMSDMSIT-EHYD 363 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I I A + + + FE+G+P+I F+D N +P + G ++ SNLC+ Sbjct: 364 ELVTNPRIS-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRSNPLK--GHINMSNLCS 420 Query: 587 EI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI TL+ S + CNLGS+N+ F + F +T+ TAVR L Sbjct: 421 EILQVNAPSTLDPSGNYATIGQDISCNLGSLNIAKAFESPDF-----GATVETAVRALTQ 475 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V ++ + + K N + AIGLG M L I Y EA++ + +++H Sbjct: 476 VSELTDIEAVPSIAKGNESMHAIGLGQMNLHGFLASKRIHYGCAEALDFTNFYFLTVTYH 535 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIGLLAEVRDELAMNRTSRL 744 A+ S LA E+G + F+ S + G F + + + ++ E + +R Sbjct: 536 ALRTSHALAVEKGQRFQGFEDSAYASGAFFDKYLKQEWVPATKRVEQLFHEAGVRIPTRE 595 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W +LK +V G+ N+ A+ PT +I+ I + SI P + ++ Sbjct: 596 DWLKLKNQVARDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKE---------- 645 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L + M +D N+E D +F + +I++ + Sbjct: 646 ---GRLGRVYYPAPGMTND---------NVEYFED--------SFTVGYEKIIDTYAMAT 685 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 + +DQ SL L+ + + + ++ AW G+KT YY+R R +S L+G + Sbjct: 686 QHVDQGLSLTLFFTADSTTRDINRAQIYAWKAGIKTLYYIRLR------QSALQGTE 736 >gi|52080344|ref|YP_079135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus licheniformis ATCC 14580] gi|52785723|ref|YP_091552.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus licheniformis ATCC 14580] gi|319645871|ref|ZP_08000101.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp. BT1B_CT2] gi|52003555|gb|AAU23497.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus licheniformis ATCC 14580] gi|52348225|gb|AAU40859.1| NrdE [Bacillus licheniformis ATCC 14580] gi|317391621|gb|EFV72418.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp. BT1B_CT2] Length = 700 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 179/688 (26%), Positives = 300/688 (43%), Gaps = 101/688 (14%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E+ RY E +K F + K+ D+A + + + +RY R Sbjct: 67 EFLSRYTFEEIKEVFKEAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERY-----EDR 121 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCF 372 I + FF A G +KEK A EF ++ + + STPT N+G R +L SCF Sbjct: 122 ISIVALFF---ANG------DKEK-AKEFVRMMINQEYQPSTPTFLNAGRKRRGELVSCF 171 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L V D L I A+ + L+K GG+ + + +R G I ++GV+ +K+ + Sbjct: 172 LLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLD 231 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + +Q G+R+G+ AYL +H D+ +FLD +K + D+ R ++ IPD F++ Sbjct: 232 NAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIEL 291 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 ++ +F P V + + E ++ E Y+R + +K KI + K+ + Sbjct: 292 AREDKAAYVFYPHTVYKAYGEHLDEMDMN-EMYDRLVEDPRVKK-EKIHPRKMLEKLAML 349 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETAV-----C 600 E+G+P+I F+D N H+ V SNLC+E+ S +E + C Sbjct: 350 RSESGYPYIMFQDNVNNVHANNHISKVKFSNLCSEVLQASQVSSYTDYGQEDEIGLDISC 409 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659 NLGS+N+L N L T++ A L +V + N KK+N ++IGLG Sbjct: 410 NLGSLNILNVMKNKS-----LEQTVKLATDSLTHVSETTNITNAPAVKKANKAMKSIGLG 464 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718 M L +I Y S EA + A+ ++F++I S E+A+E+G Y ++GS + Sbjct: 465 AMNLHGFLAQNNIAYESEEARDFANTFFMMMNFYSIERSAEIAKEKGETYHGYEGSAYAT 524 Query: 719 GVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 G + + + L E M+ ++ W +LK+ VK G+ +S + IA Sbjct: 525 GEYFEKYVTQDFSPKFEKVAKLFE-----GMHIPTKEDWKQLKQFVKEHGLYHSYRLCIA 579 Query: 768 PTATIANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 PT +I+ + + S+ P +Y N M G N F E Sbjct: 580 PTGSISYVQSSTASVMPIMERIEERTYGNSKTYYPMPG-LAPSNWFYYKE---------- 628 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 A+++D +++ S Q+ +DQ S L+L D Sbjct: 629 ----------------------------AYDMDMFRVVDMISTIQQHVDQGISFTLFLKD 660 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + + L+ I A G+KT YY R++ Sbjct: 661 TMTTRDLNRIDLYAHHKGIKTLYYARTK 688 >gi|57234945|ref|YP_180992.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] gi|57225393|gb|AAW40450.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] Length = 585 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 167/623 (26%), Positives = 268/623 (43%), Gaps = 87/623 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHFM 352 +L RY +G+ E + F RVA +A E + A EFY +++ F F+ Sbjct: 10 VLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYGMMTGFEFL 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G LSSCF+ V D + GI A+ E ++ +Y GG G + +R Sbjct: 70 PNSPTLLNAGRELGLLSSCFVLPVADSVAGIAKAVGEAMVIHQYGGGTGFAFDAIRPEDD 129 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + + + G + + V ++ + Q G R G A L H D+ +F+ + D+ Sbjct: 130 PVKSGHKVAGGPVRLVGVFSEAVNYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DE 185 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + + + D F+++V + + L +P R Sbjct: 186 GSHSANFGINIALTDDFIRKVRRGEDYELVNP----------------------RTG--- 220 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +V +SA ++ ++ +ETG P I F D N +P +G +++ C L Sbjct: 221 --RVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLLP 278 Query: 593 SSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 T LG+INL + DY +L I AVR LD+V+++N + + +K Sbjct: 279 YESAT----LGTINLSGMLLKEGNCCRVDYPRLGGLIAKAVRFLDDVLEVNRYPSAEVEK 334 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 + R IGLG MGF L L I Y S EAV ADE M F+ A A+ ELA ERGA+ Sbjct: 335 AARATRKIGLGFMGFAEMLIKLGIRYDSAEAVSAADELMAFVKEAACQATEELALERGAF 394 Query: 709 SSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 +F GS++ Q G P RN+ C+ Sbjct: 395 PAFAGSIYAQKGAKP-----------------------------------RRNATCLTFT 419 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826 T T + I S I P Y + V++ + G + +N ++R + A+I L Sbjct: 420 NTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIEKLLT 479 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKK 884 + S N IP+D +++ TA +I P W I + QK+ D A Q++N D S + Sbjct: 480 GE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPADA-SVED 537 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907 + ++ +A +GLK R S Sbjct: 538 IADLFLKAHELGLKGVTAYRDSS 560 >gi|301300445|ref|ZP_07206645.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851942|gb|EFK79626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 723 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%) Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 S F+ + D + DF F+ ++ Y +Y L + + + + F RVA Sbjct: 74 SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389 EK A+E + L + +TP+ N+G R +L SCFL + DD+ I + Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L++ GG+G + + +RG GA I G +G + GV+P +K+ D+ NQ G+R+GA Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL +H D+E FL +K D++ R ++ +PD + + V +N LF P V Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310 Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566 +Y K F +Y + ++ D + +K I A L ++ + E+G+P++ D Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367 Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614 N +P G + SNLC+EI +N+ E + CNLGS N++ A+ Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425 Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 F ++ R L V D + + + N IGLG MG + L I Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIE 480 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726 Y SPEA+E +++ + AS ++A+ER + +F+ S + G + D+ Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGSY-FDTYLNQEFA 539 Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E+ D + + ++ W LK+ V G+ + N +A+AP +I+ I + S+ Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++N +++R E I + Y + N E +P Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887 + +A++ D +I++ + Q+ +DQ SL L++ D+ + + L Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSI 687 Query: 888 IYRQAWLMGLKTTYYLRS 905 + A G+K+ YY+R+ Sbjct: 688 LRNYAHYKGVKSIYYVRT 705 >gi|46255233|ref|YP_006145.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus thermophilus HB27] gi|46198082|gb|AAS82492.1| ribonucleoside-diphosphate reductase alpha chain [Thermus thermophilus HB27] Length = 559 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 173/586 (29%), Positives = 256/586 (43%), Gaps = 103/586 (17%) Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 T+ E +F ++ + +TP N G R SC+ T V DD I A+ E M Sbjct: 48 TKVEGFGRKFLEYVARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGM 107 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++K GG +R GA I NG+S G F + + NQG R+G AYL Sbjct: 108 MSKQGGGTSLYLGRLRPRGAPIR-DNGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYL 166 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+EE+L ++ R H Q+ W + D + Sbjct: 167 DVEHPDLEEWLSIQ--------REHS--------------PVQSLFWGVSVGDRWLE--- 201 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E A GE + A W KML E G P++ F+D N ++P Sbjct: 202 -------------EMIAGDGEKR--------ARWAKMLKSRAEVGIPYLFFRDNANQKAP 240 Query: 573 Q--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + +G + +SNLCTEI L SS EE+ VC L S+NLL ++ K + T V Sbjct: 241 EVFRALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLV 294 Query: 630 RVLDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 LD+V+D +E+A + +RAIGLG++G+ S L IP SPEA Sbjct: 295 IFLDSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRN 354 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 E + I E A+E S W + P D + + E+++ Sbjct: 355 AEIFKTIR--------ERAEE--------ASRWLRKRHPEDELAGVGELKER-------- 390 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802 RN+ +AIAPT + A I G VS SI+P N Y+K Sbjct: 391 ---------------RNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFK 435 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N FL L+++ +E + + H+GS+ +++ + D+ K + T EI M L+ A+ Sbjct: 436 NPFLEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAAS 495 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 RQK IDQ QSLNL + E + ++ + AW GLK YY S+S Sbjct: 496 RQKHIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQS 541 >gi|227545164|ref|ZP_03975213.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri CF48-3A] gi|300909161|ref|ZP_07126622.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus reuteri SD2112] gi|227184847|gb|EEI64918.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri CF48-3A] gi|300893026|gb|EFK86385.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus reuteri SD2112] Length = 723 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 168/664 (25%), Positives = 296/664 (44%), Gaps = 82/664 (12%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++F F ++ Y +Y L N + + + RVAM E+ A++ + + Sbjct: 91 QNFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMQLADEII 149 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TPT N G R + SCF DD+ I + L+K GG+G + + Sbjct: 150 HQRYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL + Sbjct: 210 LREAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YEN 524 K D++ R ++ +PD F + V QNA LFSP D+ +YG F + Sbjct: 270 KENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSP---YDVERVYGMPFSYVDITKE 326 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ +I+ +K++A L ++ + E+G+P+I D N +P G + SNL Sbjct: 327 YDNLVANDDIRK-KKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNL 383 Query: 585 CTEITL---------NSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI + S E + CNLGS N+ N + +I+ +R L Sbjct: 384 CSEIAQVQVPAQVNNDQSYSEMGIDISCNLGSTNIA-----NMMESPDFGKSIKAMMRGL 438 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 + D+ + + + N ++GLG MG S L HI Y SP A+E ++ Sbjct: 439 TRISDVEDLDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLN 498 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI----GLLAEVRDEL--AMNRTSRL 744 + ++ AS E+A+ER + F+ S + G + + G ++V L + Sbjct: 499 YWSLVASNEIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIE 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W +LK+ V G+ N +A+AP + + I + S+ P Sbjct: 559 DWKKLKENVMQDGLYNQYRLAVAPNGSTSYINDSTASLHP-------------------- 598 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 ++N +++R E MI + Y + N D + +A+++D +I++ + Q Sbjct: 599 -IINRVEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDMDMRKVIDTYAAAQ 648 Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + IDQ+ S+ L++ D+ + + L+ + A+ G+K+ YY+R+ + Sbjct: 649 QHIDQSLSMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRTFTD 708 Query: 909 TSVE 912 S E Sbjct: 709 DSDE 712 >gi|227891213|ref|ZP_04009018.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus salivarius ATCC 11741] gi|227867087|gb|EEJ74508.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus salivarius ATCC 11741] Length = 723 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%) Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 S F+ + D + DF F+ ++ Y +Y L + + + + F RVA Sbjct: 74 SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389 EK A+E + L + +TP+ N+G R +L SCFL + DD+ I + Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L++ GG+G + + +RG GA I G +G + GV+P +K+ D+ NQ G+R+GA Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL +H D+E FL +K D++ R ++ +PD + + V +N LF P V Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310 Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566 +Y K F +Y + ++ D + +K I A L ++ + E+G+P++ D Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367 Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614 N +P G + SNLC+EI +N+ E + CNLGS N++ A+ Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425 Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 F ++ R L V D + + + N IGLG MG + L I Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIE 480 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726 Y SPEA+E +++ + AS ++A+ER + +F+ S + G + D+ Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGSY-FDTYLNQEFA 539 Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E+ D + + ++ W LK+ V G+ + N +A+AP +I+ I + S+ Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKEHVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++N +++R E I + Y + N E +P Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887 + +A++ D +I++ + Q+ +DQ SL L++ D+ + + L Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSI 687 Query: 888 IYRQAWLMGLKTTYYLRS 905 + A G+K+ YY+R+ Sbjct: 688 LRNYAHYKGVKSIYYVRT 705 >gi|300214874|gb|ADJ79290.1| Ribonucleoside-diphosphate reductase [Lactobacillus salivarius CECT 5713] Length = 723 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%) Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 S F+ + D + DF F+ ++ Y +Y L + + + + F RVA Sbjct: 74 SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389 EK A+E + L + +TP+ N+G R +L SCFL + DD+ I + Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L++ GG+G + + +RG GA I G +G + GV+P +K+ D+ NQ G+R+GA Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL +H D+E FL +K D++ R ++ +PD + + V +N LF P V Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310 Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566 +Y K F +Y + ++ D + +K I A L ++ + E+G+P++ D Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367 Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614 N +P G + SNLC+EI +N+ E + CNLGS N++ A+ Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425 Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 F ++ R L V D + + + N IGLG MG + L I Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLARNQIE 480 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726 Y SPEA+E +++ + AS ++A+ER + +F+ S + G + D+ Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGSY-FDTYLNQEFA 539 Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E+ D + + ++ W LK+ V G+ + N +A+AP +I+ I + S+ Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++N +++R E I + Y + N E +P Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887 + +A++ D +I++ + Q+ +DQ SL L++ D+ + + L Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPTGLYEWKNGRTDKMTTRDLSI 687 Query: 888 IYRQAWLMGLKTTYYLRS 905 + A G+K+ YY+R+ Sbjct: 688 LRNYAHYKGVKSIYYVRT 705 >gi|260425806|ref|ZP_05779786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Citreicella sp. SE45] gi|260423746|gb|EEX16996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Citreicella sp. SE45] Length = 760 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 169/609 (27%), Positives = 270/609 (44%), Gaps = 89/609 (14%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +GS I++ + + R+A LA ET+ E FY L F ++ + +GT Sbjct: 19 FKEADGSPIDVTVEDSWRRIARSLASVETDAEGWEQRFYEALEDFKYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + T+PD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RSVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVAGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H D+E+F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAKA----DSARLRMFNLS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W L +YG KV+R + A Sbjct: 195 VLVTDAFMEAVKADGSWEL-----------VYGD------------------KVYRTVKA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW +++ ++ P + F D N + +V + ++N C E L C L Sbjct: 226 RDLWNRIMRATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSINL A F D +L + + TAVR++DNV+D + + + + R I Sbjct: 282 GSINL-ARLVKQPFEAEAHLDEAELEALVATAVRMMDNVVDASRFPLPQQLEEAQNKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL + + Y S EA + + I+ + ASVELA+E+GA+ F Sbjct: 341 GLGVTGLADALLMKGLRYGSKEAAAQTEAWLRLIARASYLASVELAKEKGAFPLF----- 395 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 D+ LA + L M+ D+++ ++ G+RN+ +IAPT TI+ Sbjct: 396 -------DAEKYLA-TGNMLNMD-------DDVRDAIREHGIRNALLTSIAPTGTISLYA 440 Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G VS I+P + Y + + D T +V+ Q M DLK G+ E Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGTRTEEEVVDYAVQ-------MWRDLK------GDAE 487 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894 L + A +DP + + QKWID + S + E S + +Y QA+ Sbjct: 488 -----LPEYFVNAQTLDPQAHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQAYE 542 Query: 895 MGLK--TTY 901 G K TTY Sbjct: 543 TGCKGCTTY 551 >gi|269925171|ref|YP_003321794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] gi|269788831|gb|ACZ40972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] Length = 811 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 149/502 (29%), Positives = 231/502 (46%), Gaps = 71/502 (14%) Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMC 353 +I DRY NG+ +E P+ ++RVA +A E E + + FY++L F F+ Sbjct: 40 KIFLDRYARKDPNGTPLEHYPEEMWLRVAKAIAAVEPNPEAQRQWTLRFYDILQGFRFVP 99 Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 L +G+ +CF+ P+D + GIF + A + + SGG+G + + +R G Sbjct: 100 GGRILSGAGSGAEVTYYNCFVIPSPEDSVEGIFRNITTAAHIMRRSGGVGVNLSSLRPRG 159 Query: 412 AHIHGTNGKSQGVIPFLKVAND-TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL-RKNT 469 A+I NG S G + + +D T + QGG R+GA+ L+ H D+EEF++ RKN Sbjct: 160 AYIKTVNGTSSGPCSWAILYSDMTGKVIIQGGSRRGALMIMLDDDHPDIEEFVEYKRKNP 219 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G N + + D FM+ V ++ W L Sbjct: 220 G----HIDHANLSVAVSDAFMEAVKKDLPWDL---------------------------- 247 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + + KV++ I A LWRK+ + P + F D N RS + + N C E Sbjct: 248 -KWQGKVWKTIRARDLWRKIAESAWAYAEPGLVFIDRYNKRSNTWYFENIRCVNPCGEQG 306 Query: 590 LNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-E 644 L VCNLG++NLLA FD++ LA+T R A+R LDNVID + E Sbjct: 307 L----PPWGVCNLGALNLLAFVKHIDGETYFDFEDLANTARVAIRFLDNVIDATVYPFPE 362 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + H R GLG MG L L + Y SPEA + + I A AS +LA E Sbjct: 363 NEEAQKHGARRTGLGTMGLADVLIKLGVKYGSPEAEPLVERIYRTIRDAAYDASADLAAE 422 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G + F + QG F +R+ LP +E++ +++ G+RN+ + Sbjct: 423 KGPFPKFDRDKYMQGEF----------IRE---------LP-EEIQAKIRRQGIRNAVLL 462 Query: 765 AIAPTATIANICGVSQSIDPSY 786 APT T +++ GV+ I+P + Sbjct: 463 TQAPTGTTSSLAGVNSGIEPVF 484 >gi|90962207|ref|YP_536123.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus salivarius UCC118] gi|90821401|gb|ABE00040.1| Ribonucleoside-diphosphate reductase alpha chain [Lactobacillus salivarius UCC118] Length = 723 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%) Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 S F+ + D + DF F+ ++ Y +Y L + + + + F RVA Sbjct: 74 SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389 EK A+E + L + +TP+ N+G R +L SCFL + DD+ I + Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L++ GG+G + + +RG GA I G +G + GV+P +K+ D+ NQ G+R+GA Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL +H D+E FL +K D++ R ++ +PD + + V +N LF P V Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310 Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566 +Y K F +Y + ++ D + +K I A L ++ + E+G+P++ D Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367 Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614 N +P G + SNLC+EI +N+ E + CNLGS N++ A+ Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425 Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 F ++ R L V D + + + N IGLG MG + L I Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIE 480 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726 Y SPEA+E +++ + AS ++A+ER + +F+ S + G + D+ Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGRY-FDTYLNQEFA 539 Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E+ D + + ++ W LK+ V G+ + N +A+AP +I+ I + S+ Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P ++N +++R E I + Y + N E +P Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887 + +A++ D +I++ + Q+ +DQ SL L++ D+ + + L Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSI 687 Query: 888 IYRQAWLMGLKTTYYLRS 905 + A G+K+ YY+R+ Sbjct: 688 LRNYAHYKGVKSIYYVRT 705 >gi|227529512|ref|ZP_03959561.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus vaginalis ATCC 49540] gi|227350597|gb|EEJ40888.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus vaginalis ATCC 49540] Length = 723 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 172/660 (26%), Positives = 293/660 (44%), Gaps = 86/660 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F ++ Y +Y L N + + + RVAM E+ A+ + + Sbjct: 90 QQNFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMILADEI 148 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TPT N G R + SCF D++ I + L+K GG+G + + Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFAIQPTDNMNTIGRTINSALQLSKIGGGVGINLS 208 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL Sbjct: 209 NLREAGAPIKKIENAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGA 268 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523 +K D++ R ++ +PD F + V ++ LFSP D+ +YGK F E Sbjct: 269 KKENADEKIRLKTLSLGVTVPDKFYELVEKDEDMYLFSP---YDVERVYGKPFSYVDITE 325 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ EI +K++A L ++ + E+G+P+I D N +P G + SN Sbjct: 326 EYDNMVANDEIHK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRDNPID--GKIVMSN 382 Query: 584 LCTE--------ITLNSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+E I + S ET CNLGS N+ N + +IR VR Sbjct: 383 LCSEIAQVQTPSIVADDQSYETLGTDISCNLGSTNIA-----NMMNTPDFGRSIRAIVRG 437 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L + D+ + + KK N +IGLG MG L HI Y SP AVE + Sbjct: 438 LTRISDVESLDVVPSIKKGNELSHSIGLGAMGLHGYLAKNHIQYGSPVAVEFTSVYFMLL 497 Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745 ++ ++ AS E+A+ER + +F+ S + G + + G +++ +L N +P Sbjct: 498 NYWSLVASNEIAKERHETFHNFEKSKYADGSYFDKYVSKDWGPKSDLVKKLFAN--IHIP 555 Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W +LK V G+ N +A+AP + + I + S+ P Sbjct: 556 TIDDWKKLKDDVMADGLYNEYRLAVAPNGSTSYINDSTASLTP----------------- 598 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 ++N +++R E MI + Y + N D + +A+++D +I++ + Sbjct: 599 ----IINRIEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDMDMRTVIDTYA 645 Query: 862 RRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ+ SL L++ P G + L+ + A+ G+K+ YY+R+ Sbjct: 646 AAQQHVDQSLSLTLFVRSTMPEGLYEWKNGRTNKMTTRDLNILRHYAYKKGIKSIYYVRT 705 >gi|241895722|ref|ZP_04783018.1| ribonucleotide reductase, alpha subunit [Weissella paramesenteroides ATCC 33313] gi|241871089|gb|EER74840.1| ribonucleotide reductase, alpha subunit [Weissella paramesenteroides ATCC 33313] Length = 736 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 160/623 (25%), Positives = 282/623 (45%), Gaps = 82/623 (13%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381 R+ M + E A+ + + + +TP+ N+G +R +L SCF+ V DD+ Sbjct: 138 RIVMNVLFYANGDETLAMNLADEMIHQRYQPATPSFLNAGRSRRGELVSCFILQVTDDMN 197 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I + L+K GG+G + +R GA I G + GV+P +K+ D+ NQ Sbjct: 198 AIGRVINSALQLSKIGGGVGIVLSNLREAGAPIKGIANAASGVVPVMKLLEDSFSYSNQM 257 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R GA YL +H D+ FL +K D++ R ++ +PD F + + N+ L Sbjct: 258 GQRNGAGVVYLSVFHPDIMSFLATKKENADEKIRVKTLSLGLTVPDKFYELLKNNSDMFL 317 Query: 502 FSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 FSP D+ +YGK F +I E Y+ +I+ +KI A L ++ + E+G+ Sbjct: 318 FSP---YDVERVYGKPFNYVDITAE-YDAMVANKQIRK-KKIRARELETEISKLQQESGY 372 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEI-----TLNSSSEET-------AVCNLGSIN 606 P+I D N +P G + SSNLC+EI ++E+T CNLGS N Sbjct: 373 PYIINIDTVNAANPI--AGKIISSNLCSEILQVQRASQINNEQTYDELGTDVSCNLGSTN 430 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 ++ A F ++ VR L V D + + + N AIGLG MG + Sbjct: 431 IVNMMATKNF-----GKSVDAMVRALTFVSDQTDLDIVPSVRLGNRQTHAIGLGAMGLHA 485 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID 724 H+ Y EA++ + ++++++ AS +A+ER ++ F+ S + G + Sbjct: 486 FFAKNHMYYGDEEALDFTNAYFLMLNYYSLVASNNIAKERQSSFYEFEKSTYASGAYFDK 545 Query: 725 SIG-----LLAEVRDELAMNR-TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 I +V++ +++ ++ W L + VK G+ N+ MAIAPT +I+ + Sbjct: 546 YINEDWSPKTDKVKEIFSVHHFPTKEDWVALAESVKQYGLYNAYRMAIAPTGSISYVNDA 605 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + S+ P ++N +++R E I + Y +G Sbjct: 606 TASLHP---------------------IINRVEER---QEKKIGKIYYPAPYLGT----- 636 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--PSG-------------- 882 D + +A+ +D +I+ + Q+ IDQ +L L++ P+G Sbjct: 637 -DTLPYYESAYNMDMRRVIDVYAAAQQHIDQGMALTLFMRSTIPAGLYDWKDGHTEKMTT 695 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 696 RDLNILRLYAYQKGIKSIYYIRT 718 >gi|10834910|ref|NP_066871.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 3] gi|5102911|dbj|BAA78728.1| UL39 protein [Marek's disease virus serotype 2 MDV2] gi|5689311|dbj|BAA82935.1| UL39 product homolog [Marek's disease virus serotype 2 MDV2] gi|10800004|dbj|BAB16549.1| UL39 protein [Gallid herpesvirus 3] Length = 797 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 175/669 (26%), Positives = 300/669 (44%), Gaps = 91/669 (13%) Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--- 350 LGLQ + Y+ Y + + E FF+R+A A + + K+ +S++ Sbjct: 149 LGLQSALKYEEYLTELEDGKKESLCQFFVRLAAAAATEASNKKAFMSALGTEVSTWETAF 208 Query: 351 -----------FMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQENAMLAKYSG 398 F+ STP + G +SC+L + + A+ ++ + + Sbjct: 209 TAFFFALARQIFVPSTPCMLFLGREGTSTASCYLMDPRTINTHDTLKAIADDIVPHLLAR 268 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G+G + N K+ G++P +KV + +A N G +R VC YLE WH D Sbjct: 269 G---------GIGISLQHLNQKT-GLMPVMKVLDSLVMAANAGERRPTGVCVYLEPWHAD 318 Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511 + L++R ++ RR ++ A W DL KR +N WTLF S L Sbjct: 319 IMSALNMRGMMATEESRRCDNVFIALWTCDLLFKRYERHANGEKNVTWTLFD-SRASILA 377 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568 L+G EFE Y E + ++++ + M ++ TG P+I FKD CN Sbjct: 378 TLHGSEFEKEYNRLEAEG--------LGVASLPVRDLMFAIIKSAASTGSPFILFKDACN 429 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLL-AHFANN---QFDYDKLAS 623 G + SNLCTEI + VC+L S+NL F N +FD+ L Sbjct: 430 KHYITDTQGDAIAGSNLCTEIIQKTDGNTNGVCSLVSVNLARCVFDENGEKKFDFSALRR 489 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R A +++++ + K++ HR++G+G+ G +AL + + + + Sbjct: 490 AVRLATVFVNSIMSSSDVPTAKSRSGKDRHRSMGIGVQGLHTALLSMGLDLSDERVKPLN 549 Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPID---SIGLLAEVRDELAM 738 + E + A++ S E E G A++ F S + +G D ++GL Sbjct: 550 KQIFELMLLEAMTVSCEFC-EGGLPAFADFSNSYYSRGRLHFDGWANVGL---------- 598 Query: 739 NRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 +P W+ L++R++ G+ N+ +A+ PTA A + VS+S P + N++ K + Sbjct: 599 ----SMPEEWNALRERIQASGLYNAQFVALMPTAASAQVTEVSESFLPVFSNMFNKVTTA 654 Query: 797 GDFTVVNSFLVNELKQ-------RDLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATA 848 G+ N+ L+ EL++ R L A + + + ++GN LK + TA Sbjct: 655 GELLRPNNQLMGELREIYADNEDRRLKAIAALECANWCVETALGNKPECSQLLK--YKTA 712 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL------DFIYRQAWLMGLKT-TY 901 FE D LI+ + R ++DQ+QS+ L++ E + L + + R A+ GLKT Y Sbjct: 713 FEYDQSLLIDLCADRAPFVDQSQSMTLFVTEAADGTLLASHVMNLLLR-AYKAGLKTGMY 771 Query: 902 YLRSRSATS 910 Y + R AT+ Sbjct: 772 YCKIRKATN 780 >gi|251792577|ref|YP_003007303.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533970|gb|ACS97216.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter aphrophilus NJ8700] Length = 562 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 164/592 (27%), Positives = 262/592 (44%), Gaps = 116/592 (19%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ ++ S+P N G SCF + + D + I + E +++K Sbjct: 58 EGYAEKFYHYMARGYYSLSSPIWSNFGLDRGLSISCFGSYIGDSINAIMSTVAEIGVMSK 117 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G++I NGKS G F K+ T ++QG RKG Y++ Sbjct: 118 LGGGTSGYFGDIRPRGSNIT-NNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 176 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D+EE+LD+ + + + ++ W+ + AG Sbjct: 177 HGDIEEWLDIHTEGNPIQLMYYGVCVSHEWLESM-------KAG---------------- 213 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + Y+RQ +W K+L ETG P+I FKD N P Sbjct: 214 --------DPYKRQ----------------IWAKLLQRKTETGIPYIFFKDNANAGRPDV 249 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + ++H+SNLC+EI L SS +E+ VC L S+NLL +D+ T A V Sbjct: 250 YKDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLLY--------FDEWKDT--DAPEV 299 Query: 632 LDNVIDI----------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 L +DI N +++A K HRA+GLG++G+ S L ++ + S EA++ Sbjct: 300 LTYFLDIVMSEFIAQSANIQFMDRANKFARRHRALGLGVLGWHSYLQSKNMAFDSFEAMQ 359 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + + + AS ELAQ G KG Sbjct: 360 HNNIIFKLLQEKTLKASKELAQRFGEPEILKG---------------------------- 391 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800 G RN+ M++APT + + I G VS SI+P N YVK Sbjct: 392 --------------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVV 437 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 N FL LK++ L + + + +DGS+ ++ + +D K++ T EI + +I+ A Sbjct: 438 YKNPFLEALLKRKGLDRDDIWESILLNDGSVQHLTELTEDEKEVFKTFSEISQLSVIQQA 497 Query: 861 SRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 ++RQK+IDQ QS+N+ + + K L+ +Y A +GLK+ YY S SA V Sbjct: 498 AQRQKYIDQGQSVNIMVHPATPAKDLNQLYLTAEELGLKSIYYQYSMSAAQV 549 >gi|242242100|ref|ZP_04796545.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis W23144] gi|242234413|gb|EES36725.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis W23144] Length = 698 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 160/609 (26%), Positives = 273/609 (44%), Gaps = 77/609 (12%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G R +L SCFL + D L I L+K Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEIDDSLNSINFIDSTAKQLSK 192 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571 + ++ + Y+ I+ +K + R+ML M+ +T G+P++ FKD N Sbjct: 313 DDIDLE-KYYDDMVANPNIEKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 366 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 ++G + SNLCTEI +N E + CNLGS+N++ N + Sbjct: 367 ANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIV-----NVMESG 421 Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K ++ T + L V D N KK+N ++GLG+M L I Y S E Sbjct: 422 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 481 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A + A+ +++++I S+E+A+ERG Y F+ S + G + E Sbjct: 482 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 537 Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + +L W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 538 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 594 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +V+++++R + + + + + + + Sbjct: 595 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 626 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 AF D M LI+ + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 627 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686 Query: 907 SATSVEKST 915 SVE+ T Sbjct: 687 -LLSVEECT 694 >gi|304381651|ref|ZP_07364300.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304339754|gb|EFM05699.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 701 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 690 LLSVEECT 697 >gi|21282422|ref|NP_645510.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MW2] gi|49482988|ref|YP_040212.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MRSA252] gi|49485603|ref|YP_042824.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MSSA476] gi|57651568|ref|YP_185667.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus COL] gi|87160290|ref|YP_493419.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161508996|ref|YP_001574655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141145|ref|ZP_03565638.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732822|ref|ZP_04866987.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH130] gi|284023752|ref|ZP_06378150.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus 132] gi|297208542|ref|ZP_06924971.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590339|ref|ZP_06948978.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MN8] gi|300912634|ref|ZP_07130077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH70] gi|14329709|emb|CAC40667.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus aureus] gi|21203859|dbj|BAB94558.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus MW2] gi|49241117|emb|CAG39795.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus aureus subsp. aureus MRSA252] gi|49244046|emb|CAG42472.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285754|gb|AAW37848.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus COL] gi|87126264|gb|ABD20778.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367805|gb|ABX28776.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729187|gb|EES97916.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH130] gi|269940308|emb|CBI48685.1| ribonucleoside-diphosphate reductase alphachain [Staphylococcus aureus subsp. aureus TW20] gi|283470025|emb|CAQ49236.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus ST398] gi|296886797|gb|EFH25701.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576638|gb|EFH95353.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MN8] gi|298694062|gb|ADI97284.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus ED133] gi|300886880|gb|EFK82082.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH70] gi|302332441|gb|ADL22634.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|312438844|gb|ADQ77915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH60] gi|315196403|gb|EFU26754.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus CGS01] gi|329313452|gb|AEB87865.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus T0131] gi|329728551|gb|EGG64984.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 21189] Length = 701 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 690 LLSVEECT 697 >gi|258423380|ref|ZP_05686271.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9635] gi|257846441|gb|EEV70464.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9635] Length = 718 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N +F Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMENGKF---- 443 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 444 -RDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 647 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 707 LLSVEECT 714 >gi|254420375|ref|ZP_05034099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Brevundimonas sp. BAL3] gi|196186552|gb|EDX81528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Brevundimonas sp. BAL3] Length = 753 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 181/643 (28%), Positives = 276/643 (42%), Gaps = 109/643 (16%) Query: 318 QAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF- 372 +A + RVA LA E K + RA F L ++ F+ + L +GT R L +CF Sbjct: 30 EATWDRVAAALAEAEPTKTRARWRA-RFRETLDAYRFLPAGRILAGAGTGRAVTLFNCFV 88 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + VPDDL GIF L+E A+ + GG+G D++ VR GA + G ++ G + F+ V + Sbjct: 89 MGVVPDDLDGIFQHLREAAVTLQQGGGVGMDFSTVRPSGALVRGVGAEASGPLSFMDVWD 148 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + G+R+GA+ L H D+E F+D ++ D R + N + +PD FM Sbjct: 149 SMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR----DAVRFRNFNLSVLVPDAFMAA 204 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 + +A W L F+ GEI+ R + A LW +++ Sbjct: 205 LDADADWPLV---------------FD------------GEIR--RTVRATDLWTRLMQA 235 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++ P + F D N + H V+ +SN C E L C LGSINL A Sbjct: 236 TYDAAEPGVIFIDRVNAANNLAHCEVIAASNPCGEQML----PPYGACLLGSINL-ARLV 290 Query: 613 NNQFDYD------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + F+ D KLA RTAVR+LDNVIDI+ + + R +GLG+ G A Sbjct: 291 SAPFEPDAALDEQKLADLTRTAVRMLDNVIDISRFPLPAQEAEARAKRRLGLGVTGLADA 350 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L Y AV + + I A AS ELA E+GA+ L+D + ++ Sbjct: 351 LIFCGARYGEDRAVALTGRWLGLIRREAYRASAELAAEKGAF-----PLYDPAMLQRPNL 405 Query: 727 GLL-AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDP 784 L AE R+ + ++ G+RN +IAPT T + + G VS I+P Sbjct: 406 ASLDAETRELIGLH-----------------GLRNGCLTSIAPTGTTSLLAGNVSSGIEP 448 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y + M D T ++ + ++ ++ K G ++ P D Sbjct: 449 VFAFAYTRKVMQPDGT----------RREEAVEDYALALWKTLKGPDAPLDSAPGD---A 495 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK- 898 +A + P + + Q ID + S + E +DF +YRQ + MG K Sbjct: 496 FVSAQTLTPEHHLRMQAAAQAQIDSSISKTINCPE----NIDFEAFSDVYRQGYRMGCKG 551 Query: 899 -TTYYLR--SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 TTY + S SVE +VP P+S L Sbjct: 552 LTTYRPNAITGSVLSVESPA---------SVPAAAPSSDVDPL 585 >gi|148267191|ref|YP_001246134.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus JH9] gi|150393240|ref|YP_001315915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus JH1] gi|253315836|ref|ZP_04839049.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005522|ref|ZP_05144123.2| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794948|ref|ZP_05643927.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9781] gi|296275140|ref|ZP_06857647.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MR1] gi|147740260|gb|ABQ48558.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945692|gb|ABR51628.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|257788920|gb|EEV27260.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9781] gi|312829223|emb|CBX34065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129413|gb|EFT85406.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus CGS03] gi|329724567|gb|EGG61074.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 21172] Length = 701 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 690 LLSVEECT 697 >gi|90407599|ref|ZP_01215780.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas sp. CNPT3] gi|90311302|gb|EAS39406.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas sp. CNPT3] Length = 557 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 166/610 (27%), Positives = 266/610 (43%), Gaps = 127/610 (20%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +FY + + + S+P N G SCF +++ DD+ I E M++K GG Sbjct: 46 KFYGYMEAGFYSLSSPVWSNFGKDSGLPVSCFGSSITDDIGNILFTEAEVGMMSKLGGGT 105 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA I NG S G F+++ V+QG R+G AYL H D Sbjct: 106 SAYFGHLRHRGATIK-NNGVSSGAPHFMQLFETMVDVVSQGSVRRGRFAAYLPIEHKDAN 164 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD+ + TH + + D +++++ + KE + Sbjct: 165 EFLDIGSEGNVIQNLTHGIT----VTDAWLQKMIEG------------------DKEKRV 202 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN---IRSPQQHVG 577 LW K++ E G+P+I F D N + + ++H Sbjct: 203 ------------------------LWAKVIQRRNEMGYPYILFSDNANNQTVDTYKKHDL 238 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVLDNV 635 +++SNLCTEI L + + + VC L SINLL Y+K T + T + LD V Sbjct: 239 KINASNLCTEIMLPAHDKWSFVCVLSSINLL--------HYEKWKDTDAVETLIYFLDAV 290 Query: 636 IDINCHTIEKAKKSNH------------------THRAIGLGLMGFQSALHLLHIPYASP 677 + +E+ + SN ++RA+G+G++G+ S L +P+ Sbjct: 291 VTEFLDKLEEYRDSNERADQLVFLFMEKAYNFCKSNRALGMGVLGWHSLLQQEMLPWEGR 350 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E + I + AS LA + G S +G Sbjct: 351 DAAKLNLEIFKLIKQKSYQASASLADKFGEPSILEG------------------------ 386 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMS 796 G RN+ AIAPT + A I G VSQ I+P + N YVK Sbjct: 387 ------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNCYVKDISK 428 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 T+ N FL L+++ + + D++ HDGS+ +++ + ++ KK+ T EID M + Sbjct: 429 IKTTIKNPFLEKLLEEKGFNTKQVWLDIRDHDGSVQHLDFLTEEEKKVFKTFPEIDQMSI 488 Query: 857 IESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---SV 911 I+ AS RQ +IDQ QSLNL + D P K ++ +Y AW MG+K+ YY S +A + Sbjct: 489 IDQASTRQTYIDQGQSLNLMIHPDTPV-KDINQLYLSAWKMGIKSLYYQHSMNAAQKLNQ 547 Query: 912 EKSTLKGVDG 921 ++S K +G Sbjct: 548 QRSNCKACEG 557 >gi|315194350|gb|EFU24742.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus CGS00] Length = 701 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NLMESGK 425 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 690 LLSVEECT 697 >gi|295406452|ref|ZP_06816258.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|294968597|gb|EFG44620.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] Length = 698 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 422 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 687 LLSVEECT 694 >gi|83943745|ref|ZP_00956203.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. EE-36] gi|83954746|ref|ZP_00963457.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. NAS-14.1] gi|83841030|gb|EAP80201.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. NAS-14.1] gi|83845425|gb|EAP83304.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. EE-36] Length = 760 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 164/593 (27%), Positives = 261/593 (44%), Gaps = 92/593 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E EK FY L F F+ + +GT R L +CF + TVPD + Sbjct: 37 RIARDLAQVEKAPEKWEEAFYEALEDFKFLPAGRITAGAGTARRVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + + G + F+ V + + Sbjct: 97 AGIFDMLKEAAVTMQQGGGIGYDFSTIRPRGADVLGVSADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H DVE+F+ + D R N + I D FM V +A W Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMSVLITDPFMDAVKADASWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +F KV+R + A LW +++ +E P Sbjct: 213 L---------------QFNG--------------KVYRTVQARDLWNRIMKATYEFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + F D N + + + ++N C E L C LGSIN+ + N Q Sbjct: 244 VIFIDRINEANNLSYCETIAATNPCGEQPL----PPYGACLLGSINMARMVSDPFGDNPQ 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D + L + TAVR++DNV+D++ +++ + R IGLG+ G AL ++ + Y Sbjct: 300 LDVEALNKLVATAVRMMDNVVDVSKFPLDEQQAEAKAKRRIGLGVTGLADALLMVGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE-VRD 734 S A E + ++ I+ A ASV+LA+E+GA+ F+ + ++ + E VRD Sbjct: 360 SDAAAEQTEAWLKAIARAAYLASVDLAKEKGAFPLFEADAY----LASGTMQQMDEDVRD 415 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 +A N G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 416 AIAEN-----------------GIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458 Query: 794 NMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + D + +V+ Q RDL +A + D + ++ ++ + K+ A A Sbjct: 459 VLQKDGSRTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLAPLDHV-----KMQAAA--- 510 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKW+D + S + E S +Y AW G K TTY Sbjct: 511 ------------QKWVDSSISKTINCPEDISFDAFKDVYMAAWDQGCKGCTTY 551 >gi|324111309|gb|EGC05291.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 528 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/559 (28%), Positives = 258/559 (46%), Gaps = 69/559 (12%) Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+ Sbjct: 7 AVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQ 66 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA YL H D+ FLD ++ D++ R ++ IPD+ +NA LFSP Sbjct: 67 GAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP- 125 Query: 506 EVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 D+ +YGK F +IA E+Y+ I+ + I+A ++++ + FE+G+P+I + Sbjct: 126 --YDVERVYGKPFADIAISEHYDELVADERIRK-KYINARDFFQRLAEIQFESGYPYIMY 182 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI +NS+SE CNLGS+N +AH Sbjct: 183 EDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH- 238 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D A T+ TAVR L V DI + ++ + N AIGLG M L Sbjct: 239 ---TMDSPDFARTVETAVRGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLARE 295 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--- 726 I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + + Sbjct: 296 GIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGN 355 Query: 727 -----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + E+ + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 356 WQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 415 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + + K +G F+ NE + A+ D Sbjct: 416 IHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD----------------- 451 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 A+EI +I++ + + +DQ SL L+ D + + ++ AW G+KT Sbjct: 452 -------AYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT 504 Query: 900 TYYLRSRSATSVEKSTLKG 918 YY+R R ++E + ++G Sbjct: 505 LYYIRLRQ-MALEGTEIEG 522 >gi|253731357|ref|ZP_04865522.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724882|gb|EES93611.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|302750628|gb|ADL64805.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320139938|gb|EFW31799.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320141973|gb|EFW33801.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 698 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 422 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 687 LLSVEECT 694 >gi|82750435|ref|YP_416176.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus RF122] gi|82655966|emb|CAI80370.1| ribonucelotide diphosphate reductase alpha chain [Staphylococcus aureus RF122] Length = 698 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIQRDISCNLGSLNIV-----NVMESGK 422 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 687 LLSVEECT 694 >gi|323438920|gb|EGA96655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus O11] gi|323441868|gb|EGA99508.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus O46] Length = 698 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 422 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 687 LLSVEECT 694 >gi|322387900|ref|ZP_08061507.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus infantis ATCC 700779] gi|321141173|gb|EFX36671.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus infantis ATCC 700779] Length = 719 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 175/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTS 742 +++ + S +A+ERG + +F+ S + G F + G D + + S Sbjct: 495 LNYWTLVESNNIARERGITFHNFEKSDYANGTYFDKYTSGQFVPKSDRVKELFEGIFIPS 554 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P+G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|116617383|ref|YP_817754.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096230|gb|ABJ61381.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 723 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 163/642 (25%), Positives = 282/642 (43%), Gaps = 77/642 (11%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y++Y L N + + + RVAM E A+ + + + +TP+ N Sbjct: 104 FYNQYALKTNDGAYYI-ETYEDRVAMNALYYADGNENLALRLADEMIHQRYQPATPSFLN 162 Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G R +L SCF+ DD+ I + L+K GG+G + + VR GA + G + Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNVREAGAPVMGIDN 222 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K D++ R + Sbjct: 223 AAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKKENADEKIRVKTL 282 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 + +PD F V QN LFSPD+V ++ +I E Y+ +I+ ++ Sbjct: 283 SLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQPFNYVDITAE-YDNMVANDKIRK-QR 340 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597 I A +L ++ + E+G+P+I D N +P G + SSNLC+EI + E Sbjct: 341 IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSEILQVQTPSEIDN 398 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKA 646 CNLGSIN++ N F ++ T VR L V D N + Sbjct: 399 EQHYTKLGSDISCNLGSINIVNMMNTNDF-----GGSVDTMVRALTFVSDSSNLDVVPSI 453 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705 N AIGLG MG + + Y EA++ +++++I +S+ +A+ER Sbjct: 454 DLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEEALDFTSTFFMMLNYYSIKSSMGIAKERH 513 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMR 759 + F S + G + + + E + + W +LK+ V GM Sbjct: 514 ETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVPTEQDWAQLKEDVAKYGMY 573 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N+ AIAPT +I+ + + S+ P +VN++++R E Sbjct: 574 NAYRHAIAPTGSISYVNDATASLLP---------------------IVNKIEER---QEG 609 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-- 877 MI + Y + N E +P + +A++ D +I+ + Q+ IDQ +L L++ Sbjct: 610 MIGKVYYPAPGLSN-ETMP-----YYVSAYDTDMRRVIDVYAAAQEHIDQGMALTLFMRS 663 Query: 878 --------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ + + L + A+ G+K+ YY+R+ Sbjct: 664 TLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT 705 >gi|88194507|ref|YP_499302.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus NCTC 8325] gi|294849401|ref|ZP_06790144.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|295427308|ref|ZP_06819943.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|87202065|gb|ABD29875.1| ribonucleotide-diphosphate reductase alpha chain, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|294823933|gb|EFG40359.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|295128696|gb|EFG58327.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 721 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 157 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 216 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 217 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 276 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 277 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 336 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 337 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 390 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 391 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 445 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 446 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 505 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 506 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 563 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 564 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 617 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 618 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 650 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 651 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 709 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 710 LLSVEECT 717 >gi|269202351|ref|YP_003281620.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ED98] gi|262074641|gb|ACY10614.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ED98] Length = 701 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGIAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 690 LLSVEECT 697 >gi|15923721|ref|NP_371255.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus Mu50] gi|15926408|ref|NP_373941.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus N315] gi|156979059|ref|YP_001441318.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus Mu3] gi|258418264|ref|ZP_05682529.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9763] gi|258421561|ref|ZP_05684486.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9719] gi|258430756|ref|ZP_05688468.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9299] gi|258441752|ref|ZP_05691024.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A8115] gi|258445807|ref|ZP_05693984.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6300] gi|258449618|ref|ZP_05697720.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6224] gi|258454018|ref|ZP_05701990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5937] gi|282894499|ref|ZP_06302728.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A8117] gi|282926596|ref|ZP_06334226.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A10102] gi|13700622|dbj|BAB41919.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus N315] gi|14246500|dbj|BAB56893.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus Mu50] gi|156721194|dbj|BAF77611.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus Mu3] gi|257839057|gb|EEV63536.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9763] gi|257842487|gb|EEV66911.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9719] gi|257849428|gb|EEV73398.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9299] gi|257852221|gb|EEV76148.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A8115] gi|257855383|gb|EEV78321.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6300] gi|257857126|gb|EEV80025.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6224] gi|257863883|gb|EEV86639.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5937] gi|282591489|gb|EFB96561.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A10102] gi|282763212|gb|EFC03343.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A8117] gi|285816433|gb|ADC36920.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus aureus 04-02981] Length = 718 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 647 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 707 LLSVEECT 714 >gi|297245178|ref|ZP_06929052.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297177849|gb|EFH37098.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] Length = 721 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 157 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 216 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 217 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 276 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 277 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 336 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 337 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 390 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 391 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 445 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 446 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 505 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 506 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 563 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 564 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 617 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 618 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 650 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 651 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 709 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 710 LLSVEECT 717 >gi|254362524|ref|ZP_04978627.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica PHL213] gi|261494147|ref|ZP_05990650.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496012|ref|ZP_05992422.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094124|gb|EDN75023.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica PHL213] gi|261308262|gb|EEY09555.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310313|gb|EEY11513.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 555 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 163/588 (27%), Positives = 261/588 (44%), Gaps = 108/588 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 51 EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 110 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 111 IGGGTSAYFGDIRPRGSLIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 169 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D++E+LD+ + + + +W+ + AG Sbjct: 170 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 206 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + Y+RQ LW K+L ETG P++ FKD N P Sbjct: 207 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 242 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + +H+SNLCTEI L SS+EE+ VC L S+NLL FD K T Sbjct: 243 YKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSMNLLY------FDEWKDTDAPETLTYF 296 Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 LD V+ + +++A + HRA+GLG++G+ S L +I + S +A++ +E Sbjct: 297 LDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNE 356 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + + + AS ELAQ G +G Sbjct: 357 IFKTLQAKTLKASQELAQRFGEPEILEG-------------------------------- 384 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804 G RN+ M+IAPT + + I G VS S++P N YVK N Sbjct: 385 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 434 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 FL L+++ L E + + + +DGS+ ++E++ + K++ T EI + +I+ A++RQ Sbjct: 435 FLEKLLQEKGLDTEEIWTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQ 494 Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 K+IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 495 KYIDQGQSINVMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 542 >gi|148543560|ref|YP_001270930.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri DSM 20016] gi|184152967|ref|YP_001841308.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri JCM 1112] gi|227363480|ref|ZP_03847602.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM2-3] gi|325681910|ref|ZP_08161428.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM4-1A] gi|148530594|gb|ABQ82593.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus reuteri DSM 20016] gi|183224311|dbj|BAG24828.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus reuteri JCM 1112] gi|227071494|gb|EEI09795.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM2-3] gi|324978554|gb|EGC15503.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM4-1A] Length = 723 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 167/662 (25%), Positives = 296/662 (44%), Gaps = 78/662 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++F F ++ Y +Y L N + + + RVAM E+ A++ + + Sbjct: 91 QNFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMQLADEII 149 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TPT N G R + SCF DD+ I + L+K GG+G + + Sbjct: 150 HQRYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL + Sbjct: 210 LREAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + V QNA LFSP +V ++ + +I E Y Sbjct: 270 KENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKE-YN 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +I+ +K++A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 329 NLVANDDIRK-KKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCS 385 Query: 587 EITL---------NSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + S E + CNLGS N+ N + +I+ +R L Sbjct: 386 EIAQVQVPAQVNDDQSYSEMGIDISCNLGSTNIA-----NMMESPDFGKSIKAMMRGLTR 440 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 + D+ + + + N ++GLG MG S L HI Y SP A+E +++ Sbjct: 441 ISDVEDLDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYW 500 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSI----GLLAEVRDEL--AMNRTSRLPW 746 ++ AS E+A+ER + F+ S + G + + G ++V L + W Sbjct: 501 SLVASNEIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDW 560 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +LK+ V G+ N +A+AP + + I + S+ P + Sbjct: 561 KKLKENVMQDGLYNQYRLAVAPNGSTSYINDSTASLHP---------------------I 599 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +N +++R E MI + Y + N D + +A+++D +I++ + Q+ Sbjct: 600 INRVEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDMDMRKVIDTYAAAQQH 650 Query: 867 IDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ+ S+ L++ D+ + + L+ + A+ G+K+ YY+R+ + S Sbjct: 651 IDQSLSMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRTFTDDS 710 Query: 911 VE 912 E Sbjct: 711 DE 712 >gi|269986513|gb|EEZ92798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 756 Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 181/651 (27%), Positives = 291/651 (44%), Gaps = 107/651 (16%) Query: 291 FAFEYLGLQILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346 F + L +I Y++Y L + G+R E P + R++ LA E + +K+ +E FY LL Sbjct: 12 FDNDELRSRIFYEKYSLSDLEGNRTEKTPIEMWKRISRELASVEKDDKKKDIENNFYRLL 71 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 F F+ LF +G H L +C L D L I +E A Y GG+G D Sbjct: 72 EDFKFVPGGRILFGAGANHKATLLNCHHLPITKDSLEAIHDTAKEMARTYSYGGGVGIDI 131 Query: 405 TPVRGLGAHIHGTNGKSQ-----GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + VR ++G Q + F+K+ + T + Q G+R GA L+ H D+ Sbjct: 132 SIVRPE----RSSSGIMQQDFRLASVSFMKLYSITTGIIGQTGRR-GAWMITLDVTHPDI 186 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 E F+ ++K D++ N + + D FM V + +TL +E Sbjct: 187 ESFVTIKK----DKKSVRYANISVKVYDDFMDAVENDKIFTLHFKNE------------- 229 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG 577 +++ ++I A+ LW+K + TG P I F D SP ++ Sbjct: 230 -------------KVEFKKEIKALDLWKKRIDTAVNTGDPGIMFWDRMKSESPTEYDEKM 276 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRV 631 + +N C+E L E C+LG+INL +F NQ D++ L T+R VR Sbjct: 277 AIKGTNPCSEQPL----ENYGACDLGAINL-DYFVKNQCTDKAEVDWENLDKTVRYGVRF 331 Query: 632 LDNVIDI--NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LDNV+D N H +++ R IGLG+MG + L +++ Y S +A+E D M+ Sbjct: 332 LDNVLDYSYNRHALKEQADETVYARRIGLGIMGLANMLISMNLRYDSDKAIEFVDSLMKK 391 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A S LA E+G++ +F +AE L N RL L Sbjct: 392 IKETAYDESSNLAVEKGSFPAF-----------------VAE--KHLQRNFVKRLDKKLL 432 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFL 806 K K G+RN+ + +APT +I+++ GVS I+P Y + + S G F V++ F+ Sbjct: 433 DKISKN-GLRNACILTVAPTGSISSMAGVSGGIEPICALSYTRRSESLSEGKFEVLDPFV 491 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + + D++ + +L TA +IDP + ++ + QK Sbjct: 492 KRYMDKFKIRDKSTLPEL--------------------FVTAHKIDPFFRVKMQATIQKH 531 Query: 867 IDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 ID + ++NL D + +D IYR AW +G K+ R S + K+T Sbjct: 532 IDSSISSTVNLSAD-TDAETVDKIYRYAWKLGCKSITVYREGSKDDILKAT 581 >gi|289749069|ref|ZP_06508447.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T92] gi|289689656|gb|EFD57085.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T92] Length = 611 Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 139/473 (29%), Positives = 212/473 (44%), Gaps = 52/473 (10%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 107 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 166 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 167 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 226 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 227 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 286 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 287 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 343 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N L +P K+ ++ Sbjct: 344 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 376 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 377 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 432 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IGLG+M Sbjct: 433 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 492 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 G L L IPY S EAV +A M I A +AS LA+ERGA+ +F S Sbjct: 493 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDS 545 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ +P K++ +R+G + FD ++I A+ +A +R + D Sbjct: 43 SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDDPD---M 85 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 TV + + I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 86 PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 142 >gi|169834419|ref|YP_001694621.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae Hungary19A-6] gi|168996921|gb|ACA37533.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae Hungary19A-6] Length = 719 Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 177/660 (26%), Positives = 291/660 (44%), Gaps = 88/660 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V +++ +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYNVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQ---GVFPIDSIGLLAEVRDELAMN 739 +++ + S +A+ERG + +F KGS +D+ G F S + +D Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFI-- 552 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 S W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 553 -PSAADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E I + Y + + E IP + +A+++D +I+ Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|158079505|ref|YP_001504318.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] gi|157890349|dbj|BAF81477.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] Length = 716 Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 169/663 (25%), Positives = 288/663 (43%), Gaps = 90/663 (13%) Query: 287 YERDFAFE-YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y + F F+ ++G Y +Y + + G R + + RVA E+ A++ + Sbjct: 81 YSKKFRFDTFMGAYRFYKQYAMKTDDGER--YLERYEDRVAFNALTMGDGDEELAMKIAD 138 Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 L + + +TPT N+G R + SCFL V D + I L L+K GG+G + Sbjct: 139 ELINRRYQPATPTFLNAGRLRRGEYVSCFLIQVEDSMSSIGRTLNSALQLSKLGGGVGIN 198 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R LG I G G GV+P +K+ D NQ G+R+GA YL +H D+ +FL Sbjct: 199 LSNLRALGDPIKGIEGAGSGVVPVMKMLEDGFRYANQLGQRQGAGAVYLNVFHADIMDFL 258 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 RK + ++ ++ +PD F + LFSP +V+ + + +I E Sbjct: 259 STRKENAESAKQIKTLSLGVVVPDKFYELAESGDVIHLFSPYDVAKEYGVPFSFVDIDSE 318 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y I+ + ++A L ++ + E+G+P+I N +P G + SN Sbjct: 319 -YNNMIQNPNIRS-KVMNARDLEEEISRLQQESGYPYIMNVSTVNKANPID--GKIIMSN 374 Query: 584 LCTEI-------TLNSSS--EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI LN EE CNLGSIN+L + + + ++I T VR Sbjct: 375 LCSEILQVQTPSKLNDEQVYEELGADISCNLGSINILNLLETS----NDVVASIETMVRA 430 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L + D+ N + K N IGLG MG + + Y SPE++E+ D E I Sbjct: 431 LTYITDVSNIKAVPTIKNGNDKAHTIGLGAMGLHAWFASNQVEYGSPESIEMTDALFELI 490 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRT 741 ++ + AS ++A+ER + +F+ S + G + + + L AEV D + + Sbjct: 491 NYATLVASNKIAKERDTTFYNFENSKYADGSYFDEYVPTLSQEISSKVAEVFDGVVLPNV 550 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W+ L+ + G+ + N +A+AP +IA + + S+ P Sbjct: 551 K--DWETLRNSIIESGLYHQNRLAVAPNGSIAYVNETTSSLHP----------------- 591 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLI 857 +++ +++R DG G R+ + + +A++ + +I Sbjct: 592 ----IISMIEER-------------QDGKTGKTYYPAPRLSEKTIPYYKSAYDTSMIDVI 634 Query: 858 ESASRRQKWIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYY 902 + QK IDQ SL L++ S + L + AW G+KT YY Sbjct: 635 NVYATAQKHIDQGMSLTLFMRSELPENLYPWKVEGGATSTRDLTLLRHYAWKKGIKTIYY 694 Query: 903 LRS 905 +R+ Sbjct: 695 VRT 697 >gi|151220912|ref|YP_001331734.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus str. Newman] gi|257424851|ref|ZP_05601278.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427519|ref|ZP_05603918.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430150|ref|ZP_05606534.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus 68-397] gi|257432851|ref|ZP_05609211.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus E1410] gi|257435755|ref|ZP_05611803.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M876] gi|258452939|ref|ZP_05700933.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5948] gi|282903361|ref|ZP_06311252.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C160] gi|282905139|ref|ZP_06312997.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908117|ref|ZP_06315948.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910376|ref|ZP_06318180.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913571|ref|ZP_06321360.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|282922027|ref|ZP_06329724.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9765] gi|282923490|ref|ZP_06331170.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C101] gi|283769894|ref|ZP_06342786.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus H19] gi|283957563|ref|ZP_06375016.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293500616|ref|ZP_06666467.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509564|ref|ZP_06668275.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M809] gi|293524150|ref|ZP_06670837.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|150373712|dbj|BAF66972.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus aureus subsp. aureus str. Newman] gi|257272421|gb|EEV04544.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275712|gb|EEV07185.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279347|gb|EEV09948.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus 68-397] gi|257282266|gb|EEV12401.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus E1410] gi|257284946|gb|EEV15065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M876] gi|257859450|gb|EEV82304.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5948] gi|282314358|gb|EFB44748.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C101] gi|282322603|gb|EFB52925.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|282325768|gb|EFB56076.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327782|gb|EFB58064.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331964|gb|EFB61475.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282593685|gb|EFB98677.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9765] gi|282596316|gb|EFC01277.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C160] gi|283460041|gb|EFC07131.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus H19] gi|283791014|gb|EFC29829.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290921113|gb|EFD98174.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095621|gb|EFE25882.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467661|gb|EFF10176.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M809] Length = 718 Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + + +A Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 647 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 707 LLSVEECT 714 >gi|225870272|ref|YP_002746219.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. equi 4047] gi|225699676|emb|CAW93382.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. equi 4047] Length = 719 Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 165/609 (27%), Positives = 269/609 (44%), Gaps = 78/609 (12%) Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 ET + A+E N + +TP+ N+G +R +L SCFL V DD+ I ++ Sbjct: 136 ETLAKDLAIEMINQ----RYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSA 191 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L++ GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA Sbjct: 192 LQLSRIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVV 251 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL +H D+ FL +K D++ R ++ +PD F + NA LFSP V Sbjct: 252 YLSVFHPDIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARHNADMYLFSPYSVERE 311 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + L +I E A+ K KI A L ++ + E+G+P++ D N Sbjct: 312 YGLPFNYIDITSMYDELVANPNITKT--KIKARDLETEISKLQQESGYPYVINIDTANRS 369 Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618 +P G + SNLC+EI +N + E + CNLGS N+L + F Sbjct: 370 NPID--GKIIMSNLCSEILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSPDF-- 425 Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +IR R L V D N + K N GLG MG S L HI Y SP Sbjct: 426 ---GRSIRAMTRALTFVTDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSP 482 Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 E++E D +++ + S ++A+ER + F+ S + G + I + EL Sbjct: 483 ESIEFTDIYFMLMNYWTLVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSEL 542 Query: 737 --AMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 ++ + +P W L++ + T G+ + N +A+AP +I+ I S SI P Q + Sbjct: 543 VKSLFKDHFIPQAADWKALRQAIMTDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI- 601 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 E +Q E I + Y + + + IP + +A++ Sbjct: 602 ------------------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYD 632 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMG 896 +D +I+ + K +DQ SL L+L + + + L + A+ G Sbjct: 633 MDMRKVIDVYAAATKHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKG 692 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 693 IKSIYYIRT 701 >gi|163744560|ref|ZP_02151920.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus indolifex HEL-45] gi|161381378|gb|EDQ05787.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus indolifex HEL-45] Length = 759 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 164/619 (26%), Positives = 264/619 (42%), Gaps = 87/619 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E++ + +F+ L F ++ + +GT R L +CF + TVPD + Sbjct: 37 RIARDLAQVESDADGWEDKFFGALEDFKYLPAGRITAGAGTARRVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + + G + F+ V + + Sbjct: 97 SGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVLGVSADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H DVE+F+ + D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFITAKS----DPARLRMFNMSVLVTDPFMEAVKADGSWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L L+G KV++ + A LW ++ + P Sbjct: 213 L-----------LFGG------------------KVYKTVQARDLWNNIMQATYSYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + F D N + + + ++N C E L C LGSINL A Sbjct: 244 VIFIDRINAANNLNYCETIAATNPCGEQPL----PPYGACLLGSINLARLVAQPFDEAAH 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D D ++ + TAVR++DNV+D++ + + R IGLG+ G AL ++ + Y Sbjct: 300 LDQDAMSELVATAVRMMDNVVDVSNFPLPEQANEAQNKRRIGLGVTGLADALLMVGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + ++ I+ A ASV+LA+E+GA+ F D+ LA Sbjct: 360 SDEAAAQTESWLKAIARAAYLASVDLAKEKGAFPLF------------DAEKFLA----- 402 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 + T + D+++ ++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 403 ---SGTMQQMDDDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +V+ Q +W E + D D + P D K+ A A Sbjct: 460 LQKDGSRTEEEVVDYAVQ--MWRE-LKGDTPLPDYFVNAQTLPPADHVKMQAAA------ 510 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QKWID + S + E S +Y QAW MG K R T Sbjct: 511 ---------QKWIDSSISKTINCPEDISFDDFKDVYMQAWDMGCKGCTTYRPNDVTG--- 558 Query: 914 STLKGVDGKLNAVPVTDPN 932 S L K + P P+ Sbjct: 559 SVLSVSSEKTDKAPADSPD 577 >gi|9629835|ref|NP_045319.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 1] gi|1710388|sp|P50646|RIR1_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|995643|emb|CAA90929.1| UL39 [Bovine herpesvirus 1] gi|1149579|emb|CAA88900.1| UL39 [Bovine herpesvirus 1] gi|2653308|emb|CAA06094.1| ribonucleotide reductase large subunit [Bovine herpesvirus type 1.1] Length = 787 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 175/663 (26%), Positives = 297/663 (44%), Gaps = 72/663 (10%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLA---LKET--------EKEKRAVE 341 LGLQ + Y+ +L + G IE FF+R+A A ++E E Sbjct: 133 LGLQSALKYEEMYLAKLEGGAIESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAV 192 Query: 342 FYNLLSSFH---FMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396 F L++ + + +TP + +G L+SC+L V + E A + Sbjct: 193 FNAYLTALYRQLVVPATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLN 252 Query: 397 SGGLGNDWTPV-RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + R + + +G++ LK+ + A+A+N +R +C YLE W Sbjct: 253 RGGIGISFQSFDRAV------SRDCKRGIMGALKLLDSMAMAINSDSERPTGICVYLEPW 306 Query: 456 HIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVS 508 H DV L++R D+ R ++ + W+PDL R + WTLF D S Sbjct: 307 HCDVRAVLNMRGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLFD-DRAS 365 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L L+G F YE ER+ E + ++ + ++ + TG P++ FKD CN Sbjct: 366 HLSRLHGPAFTAEYERLEREGLGVETVPVQDLAFL-----IVRSIVMTGSPFVMFKDACN 420 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLA 622 G + SNLCTEI +S + VCNL S+NL + FD+ L+ Sbjct: 421 RHYHMDTAGDALTGSNLCTEIVQRASPDAHGVCNLASVNLPRCVREGEGGALAFDFAALS 480 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + TA ++ ++ + EKA + HR++G+G G + L L + SP A + Sbjct: 481 TAAATAAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRL 540 Query: 683 ADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNR 740 E E + ++ S L + A + F S + +G+ P D G++ L++ R Sbjct: 541 NVEIAERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYEGVV------LSLPR 594 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W L+++V G+ N+ +A+ PT + + + S+ P + N++ K MSG+ Sbjct: 595 A----WARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELL 650 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMW 855 N L+ L++ + + + ++ D ++ DL H TAFE D Sbjct: 651 RPNLPLMRALRKHFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQER 710 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLD-------FIYRQAWLMGLKT-TYYLRSRS 907 LI+ + R ++DQ+QS++L++ EP K+ +Y A+ GLKT YY + R Sbjct: 711 LIDLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVY--AYKKGLKTGLYYCKIRK 768 Query: 908 ATS 910 AT+ Sbjct: 769 ATN 771 >gi|55978392|ref|YP_145448.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus thermophilus HB8] gi|55773565|dbj|BAD72005.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermus thermophilus HB8] Length = 559 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 172/586 (29%), Positives = 256/586 (43%), Gaps = 103/586 (17%) Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 T+ E +F ++ + +TP N G R SC+ T V DD I A+ E M Sbjct: 48 TKVEGFGRKFLEYMARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGM 107 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++K GG +R GA I NG+S G F + + NQG R+G AYL Sbjct: 108 MSKQGGGTSLYLGRLRPRGAPIR-DNGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYL 166 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+EE+L ++ R H Q+ W + D + Sbjct: 167 DVEHPDLEEWLSIQ--------REHS--------------PVQSLFWGVSVGDRWLE--- 201 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E A GE + A W K+L E G P++ F+D N ++P Sbjct: 202 -------------EMIAGDGEKR--------ARWAKILKSRAEVGIPYLFFRDNANQKAP 240 Query: 573 Q--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + +G + +SNLCTEI L SS EE+ VC L S+NLL ++ K + T V Sbjct: 241 EVFRALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLV 294 Query: 630 RVLDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 LD+V+D +E+A + +RAIGLG++G+ S L IP SPEA Sbjct: 295 IFLDSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRN 354 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 E + I E A+E S W + P D + + E+++ Sbjct: 355 AEIFKTIR--------ERAEE--------ASRWLRKRHPEDELAGVGELKER-------- 390 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802 RN+ +AIAPT + A I G VS SI+P N Y+K Sbjct: 391 ---------------RNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFK 435 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N FL L+++ +E + + H+GS+ +++ + D+ K + T EI M L+ A+ Sbjct: 436 NPFLEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAAS 495 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 RQK IDQ QSLNL + E + ++ + AW GLK YY S+S Sbjct: 496 RQKHIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQS 541 >gi|27467431|ref|NP_764068.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis ATCC 12228] gi|57866331|ref|YP_187990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis RP62A] gi|282875688|ref|ZP_06284559.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis SK135] gi|27314974|gb|AAO04110.1|AE016745_209 ribonuceloside diphosphate reductase major subunit [Staphylococcus epidermidis ATCC 12228] gi|57636989|gb|AAW53777.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus epidermidis RP62A] gi|281295715|gb|EFA88238.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis SK135] gi|329723344|gb|EGG59874.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU144] gi|329737947|gb|EGG74171.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU045] Length = 701 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 161/609 (26%), Positives = 272/609 (44%), Gaps = 77/609 (12%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571 + ++ + Y+ I +K + R+ML M+ +T G+P++ FKD N Sbjct: 316 DDIDLE-KYYDDMVANPNIDKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 369 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 ++G + SNLCTEI +N E + CNLGS+N++ N + Sbjct: 370 ANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIV-----NVMESG 424 Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K ++ T + L V D N KK+N ++GLG+M L I Y S E Sbjct: 425 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 484 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A + A+ +++++I S+E+A+ERG Y F+ S + G + E Sbjct: 485 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 540 Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + +L W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 541 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 597 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +V+++++R + + + + + + + Sbjct: 598 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 629 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 AF D M LI+ + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 630 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 Query: 907 SATSVEKST 915 SVE+ T Sbjct: 690 -LLSVEECT 697 >gi|332672469|ref|YP_004421713.1| Ribonucleotide reductase, large subunit [Campylobacter phage NCTC12673] gi|327493646|gb|AEA86505.1| Ribonucleotide reductase, large subunit [Campylobacter phage NCTC12673] Length = 457 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 9/308 (2%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 RD+ F+ Y + + Y +Y L+ + ++E PQ +MRVAM + + E + ++ Y+L+ Sbjct: 145 RDYLFQNYKAISMFYTKYCLNRTKTIKLETPQITYMRVAMFICINENNRVEKIKRIYDLI 204 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S+ F +TP + NSG QLSSC L + DD + I A+ +K GG D + Sbjct: 205 STHKFTYATPIMLNSGINKGQLSSCVLAKMGDDSHSILATNDNLAIYSKNKGGTACDISA 264 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G+ I G G S G IPF+K+ + T A NQG RKG+ C Y TWH+DV+ + L+ Sbjct: 265 LRATGSIIDGV-GVSSGPIPFIKLLDSTISAWNQGSTRKGSCCVYYPTWHMDVQNLIMLK 323 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 N G + R ++ A I D+F+KR N +TLF P + L D +G +FE Y YE Sbjct: 324 DNGGTESTRARNLQYAIKIDDVFVKRWYNNENYTLFDPKDTQKLLDSFGDDFEKYYLEYE 383 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++++ + + I+A L+ ++L ETG+ +I F D N + V SNLC Sbjct: 384 QKSNIRK----KSINARELFDEILKYRVETGNIYIFFTDNVNKQGMLNR--TVTQSNLCC 437 Query: 587 EITLNSSS 594 EI L +S+ Sbjct: 438 EIVLPTSA 445 >gi|126725814|ref|ZP_01741656.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales bacterium HTCC2150] gi|126705018|gb|EBA04109.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales bacterium HTCC2150] Length = 757 Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 164/601 (27%), Positives = 258/601 (42%), Gaps = 92/601 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + + +FYN L F F+ + +GT R L +CF + T+PD + Sbjct: 37 RIANDLASVEKDPKAWEGKFYNALEDFKFLPAGRITAGAGTGRAVTLFNCFVMGTIPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAVVKGVAADASGPLSFMDVWDSMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ +K D R N + I D FM+ V + GW Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFITAKK----DAARLRMFNVSVLITDPFMEAVKADKGWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L ++G KV+R + A LW ++ +E P Sbjct: 213 L-----------VFGG------------------KVYRTVQARDLWDSIMESTYEFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + F D N + + + ++N C E L C LGSINL A+ Q Sbjct: 244 VIFIDRINKMNNLNYCESIAATNPCGEQPL----PPYGACLLGSINLARLVADPFGKAAQ 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D LA + TAVR++DNV+D + +E + R IGLG+ G AL ++ + Y Sbjct: 300 LDEPALADLVTTAVRMMDNVVDASKFPLEAQAREAAAKRRIGLGVTGLADALLMVGVRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL----AE 731 S EA +++ ++ I+ A AS LA E+GA+ F+ P + G L + Sbjct: 360 SEEAARLSERWLKAIARAAYLASAHLAGEKGAFPLFEAE-------PFLASGSLEDMDQD 412 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790 V+D +A N G+RN+ +IAPT TI+ G VS I+P + Y Sbjct: 413 VKDAIAEN-----------------GIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 455 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + + D + +V+ + +W + K+ D +PD A Sbjct: 456 TRKVLQKDGSRTEEEVVDYSVK--MWRD------KFGDA------ELPDYFVNAQTLA-- 499 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 P+ + S QKWID + S + E S +Y AW G K R + T Sbjct: 500 --PLDHVRMQSAAQKWIDSSISKTINCPEDISFDDFKEVYMAAWDQGCKGCTTYRPNAVT 557 Query: 910 S 910 Sbjct: 558 G 558 >gi|282918524|ref|ZP_06326261.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C427] gi|282317658|gb|EFB48030.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C427] Length = 718 Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 160/604 (26%), Positives = 275/604 (45%), Gaps = 69/604 (11%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRD 734 + A+ ++F++I S+E+A+ERG Y F+ S + G + E Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKAR 562 Query: 735 EL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 EL M + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 563 ELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP-------- 614 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +V+++++R + + + + + +AF D Sbjct: 615 -------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSAFNTD 651 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ SV Sbjct: 652 QMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK-LLSV 710 Query: 912 EKST 915 E+ T Sbjct: 711 EECT 714 >gi|307704818|ref|ZP_07641713.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK597] gi|307621647|gb|EFO00689.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK597] Length = 719 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 175/657 (26%), Positives = 292/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 EQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E + CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEYLQMGTDISCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + +G + I G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYITGEFVPKSDRVKELFKDVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 ADDWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|302340448|ref|YP_003805654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta smaragdinae DSM 11293] gi|301637633|gb|ADK83060.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta smaragdinae DSM 11293] Length = 826 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 146/490 (29%), Positives = 232/490 (47%), Gaps = 41/490 (8%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359 +R H++ P RVA G+A++ET KEKR F LL + F+ L Sbjct: 71 ERSLEHVDKPLETTPAQMIKRVASGIAMEET-KEKREEWTERFRWLLEDWRFVPGGRILT 129 Query: 360 NSGT-RHPQLSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 +GT ++ +C++ P+D G I L + GG+G + T +R A++ G Sbjct: 130 GAGTDQNLTYYNCYVIPSPEDSRGGIIKTLGHMTEIMSRGGGVGINLTSLRPHHAYVKGV 189 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 NG+S G + + + + + QGG R+GA+ L WH D+ EF+ ++ G + Sbjct: 190 NGRSSGSVSWGALYSFVTGLIEQGGSRRGALMLILNVWHPDILEFISSKRQMG----QIT 245 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 + N + I D FMK V ++ W L PD + Y KE++ + + +A + V+ Sbjct: 246 NANISVGITDDFMKAVKEDLDWELVFPDTN---YPGYDKEWDGDFVAW--KAAGKPVNVY 300 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 RK+ A +W ++ + + P I F D N S + + +N C E L S Sbjct: 301 RKVKAREIWNSIIESAWASAEPGIFFVDRYNAMSNSGYYARIQCTNPCGEQGLPS----W 356 Query: 598 AVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNLG++N L+ FAN N D+D L T+R AVR LD+VID + E K+ + R + Sbjct: 357 GVCNLGAVN-LSRFANGNDVDWDNLGRTVRYAVRFLDDVIDNTPYFFEANKEQQLSERRV 415 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG MG + L I Y S E+ D+ FI+ A +S + A+E+G++ F+ + Sbjct: 416 GLGTMGLAELMIKLKIRYGSKESEAFLDKLYRFIAVEAYRSSSDTAKEKGSFPKFEAEPF 475 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + F G+ E+R ++A N G+RN + APT T + Sbjct: 476 LESGF---MKGMPEEIRRKIAEN-----------------GIRNVTLLTQAPTGTTGTMV 515 Query: 777 GVSQSIDPSY 786 G S I+P Y Sbjct: 516 GTSTGIEPYY 525 >gi|251810164|ref|ZP_04824637.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis BCM-HMP0060] gi|293368192|ref|ZP_06614821.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W2(grey)] gi|251806216|gb|EES58873.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis BCM-HMP0060] gi|291317615|gb|EFE58032.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W2(grey)] Length = 698 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 161/609 (26%), Positives = 272/609 (44%), Gaps = 77/609 (12%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571 + ++ + Y+ I +K + R+ML M+ +T G+P++ FKD N Sbjct: 313 DDIDLE-KYYDDMVANPNIDKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 366 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 ++G + SNLCTEI +N E + CNLGS+N++ N + Sbjct: 367 ANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIV-----NVMESG 421 Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K ++ T + L V D N KK+N ++GLG+M L I Y S E Sbjct: 422 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 481 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A + A+ +++++I S+E+A+ERG Y F+ S + G + E Sbjct: 482 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 537 Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + +L W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 538 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 594 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +V+++++R + + + + + + + Sbjct: 595 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 626 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 AF D M LI+ + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 627 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686 Query: 907 SATSVEKST 915 SVE+ T Sbjct: 687 -LLSVEECT 694 >gi|149201158|ref|ZP_01878133.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp. TM1035] gi|149145491|gb|EDM33517.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp. TM1035] Length = 762 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 164/620 (26%), Positives = 262/620 (42%), Gaps = 88/620 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA+ E E FY+ L F F+ + +GT R L +CF + TVPDD+ Sbjct: 39 RIARALAVAEAEPALWEERFYHALEDFKFLPAGRITAGAGTARKVTLFNCFVMGTVPDDM 98 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + + G + F+ V + + Sbjct: 99 GGIFDGLREAALTMQQGGGIGYDFSTIRPKGAEVKGVSADASGPLSFMDVWDAMCRTIMS 158 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F+ + D R N + I D FM+ V + W Sbjct: 159 AGSRRGAMMATMRCDHPDIEAFIAAKS----DPARLRMFNLSVLITDAFMEAVKADGPWD 214 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV+ + A LW +++ ++ P Sbjct: 215 L-----------QFGG------------------KVYHTVQARDLWNRIMQATYDYAEPG 245 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL-----AHFANNQ 615 + F D N + + + ++N C E L C LGSINL A + Sbjct: 246 VIFIDRINAANNLAYCETIAATNPCGEQPL----PPYGACLLGSINLARLVAEPFAAGAR 301 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L +R AVR++DNV+D++ + R IGLG+ G AL ++ + Y Sbjct: 302 VDEAALDDLVRVAVRMMDNVVDVSGFPLPAQAAEAQAKRRIGLGVTGLADALLMVGLRYG 361 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S AV+ + + I+ A ASV+LA+E+GA+ F RD Sbjct: 362 SDAAVQQTEAWLHAIARAAYLASVDLAREKGAFPLFD--------------------RDA 401 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 + T + +++ V G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 402 YLASGTMQTMDADVRAAVAEHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYSYTRKV 461 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +++ Q +W + M D + + P+D K+ A A Sbjct: 462 LQKDGSRTEEEVIDYAVQ--MWRDRM-GDAPLPEHFVNAQTLPPEDHVKMQAAA------ 512 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT---- 909 QKW+D + S + E S + +Y QAW +G K R + T Sbjct: 513 ---------QKWVDSSISKTINCPEDISFEAFKNVYLQAWDLGCKGCTTYRPNAVTGSVL 563 Query: 910 SVEKSTLKGVDGKLNAVPVT 929 SV ++T K VP T Sbjct: 564 SVSETTDKAPGETRGDVPAT 583 >gi|190149419|ref|YP_001967944.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249852|ref|ZP_07336056.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244960|ref|ZP_07527057.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251677|ref|ZP_07533582.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253913|ref|ZP_07535765.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258367|ref|ZP_07540108.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262737|ref|ZP_07544364.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914550|gb|ACE60802.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651419|gb|EFL81571.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854125|gb|EFM86333.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860874|gb|EFM92882.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863117|gb|EFM95059.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867551|gb|EFM99398.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871882|gb|EFN03599.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 554 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 164/588 (27%), Positives = 259/588 (44%), Gaps = 108/588 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ + +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSAIR-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D++E+LD+ + + + +W+ + AG Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + Y+RQ LW K+L ETG P++ FKD N P Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + VH+SNLCTEI L SSS+E+ VC L S+NLL FD K Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYF 295 Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 LD V+ + +E+A + HRA+GLG++G+ S L +I + S +A++ + Sbjct: 296 LDVVMSEFIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNL 355 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + + + AS ELA+ G KG Sbjct: 356 IFKTLQEKTLKASQELAKRFGEPELLKG-------------------------------- 383 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804 G RN+ M+IAPT + + I G VS S++P N YVK N Sbjct: 384 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 433 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 FL L+++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A++RQ Sbjct: 434 FLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQ 493 Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 K+IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 494 KYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|50365345|ref|YP_053770.1| ribonucleotide-diphosphate reductase subunit alpha [Mesoplasma florum L1] gi|50363901|gb|AAT75886.1| ribonucleoside-diphosphate reductase alpha chain [Mesoplasma florum L1] Length = 721 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 165/596 (27%), Positives = 267/596 (44%), Gaps = 89/596 (14%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T +R Sbjct: 158 FQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESICRAVTTSLQLSKRGGGVALCLTNLRE 217 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGA I ++ GVIP +K+ D+ NQ G+R+GA YL H DV FLD ++ Sbjct: 218 LGAPIKQIANQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNAHHPDVMSFLDTKREN 277 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526 D++ R ++ IPD+ + +N LFSP D+ YGK + I E Y+ Sbjct: 278 ADEKIRIKSLSLGLVIPDITFELAQKNEEMALFSP---YDVEREYGKAMSDISITQE-YQ 333 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 IK I+A + + + FE+G+P+I F D N + G + SNLC+ Sbjct: 334 NLVKNPNIKK-TYINARKFFLTVAELHFESGYPYILFDDTVNNNNAHAATGRIVMSNLCS 392 Query: 587 EI-------TLN-----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI T N S + CNLGS+N+ + + A I ++ LD Sbjct: 393 EIAQVSTPSTFNDDLSFKSMGDDICCNLGSLNIAKVMESGA----EFAEVIEHSINALDL 448 Query: 635 VIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V + +I++ K NH A+GLG M L I Y S EAV+ + + Sbjct: 449 VSRTSDLSSAPSIQQGNKKNH---AVGLGAMNLHGFLATNFIWYNSIEAVDFTNMFFYAM 505 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---------VRDELAMNRT 741 +++A AS +LA + G + F+ S + G + + AE VR+ A Sbjct: 506 AYNAFKASHKLALQYGTFDGFETSQFADGSW-FNKYTKCAEDKWTPETQRVRELFAQYNV 564 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + +P W EL + +K G+ NS+ MA+APT +I+ + + S+ P + V+ Sbjct: 565 T-IPTQKDWIELVELIKKDGIANSHLMAVAPTGSISYLSSCTPSLQPVVAPIEVRK---- 619 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFEI 851 +G +G I +P D++ A+E+ Sbjct: 620 ------------------------------EGKLGRI-YVPAYNINFDNMAYYALGAYEV 648 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 PM +I+ + Q+ +DQA SL L++ D+ + + L+ Y A+ + YY+R R Sbjct: 649 GPMPIIDIVAAAQQHVDQAISLTLFMTDQVTTRDLNKAYIHAFKKKCASIYYVRVR 704 >gi|315173868|gb|EFU17885.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1346] Length = 719 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D E+ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMKYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|315149361|gb|EFT93377.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0012] Length = 719 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D E+ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQIQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|116333245|ref|YP_794772.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus brevis ATCC 367] gi|116098592|gb|ABJ63741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus brevis ATCC 367] Length = 721 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 178/691 (25%), Positives = 300/691 (43%), Gaps = 96/691 (13%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317 YIEE V + F + D +DF F+ ++ Y +Y L + + + Sbjct: 65 YIEEAVV------TAYPFSFIEDLYDYLKAQDFHFKSFMAAYKFYAQYALKTDDNEFYL- 117 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376 + F RVAM ++ A + + + + +TP+ N+G +R +L SCFL Sbjct: 118 ENFIDRVAMNALDFGGGDQRLAHDLADEIIHQRYQPATPSFLNAGRSRRGELVSCFLIQS 177 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DD+ I + L++ GG+G + +RG G I G + GV+P +K+ D+ Sbjct: 178 TDDMNTIGRTINSALQLSRIGGGVGISLSNLRGAGDPIKHIEGAASGVVPVMKLLEDSFS 237 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 NQ G+R+GA YL +H D+ FL +K D++ R ++ +PD F + + Sbjct: 238 YSNQLGQRQGAGVVYLSVFHPDIVAFLSAKKENADEKIRLKTLSLGITVPDKFYELCAAD 297 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA-----YENYERQADRGEIKVFRKISAVALWRKMLT 551 A LFSP D+ +YGK F Y+N D + +K+ A L + Sbjct: 298 ADMYLFSP---YDVERIYGKPFSYVDITAEYDNLVANPDIHK----KKMKARDLETDIGK 350 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV----- 599 + E+G+P+I D N +P G + SNLC+EI T+N+ E + Sbjct: 351 LQQESGYPYIVNIDTANRENPID--GRIVMSNLCSEIMQVQTPSTVNNKQEYVKLGTDIS 408 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658 CNLGS N++ ++ F + ++ T VR L V D + + +K N IGL Sbjct: 409 CNLGSTNIVNLMSSPDFGH-----SVETMVRALTYVTDHSDIDVVPSIQKGNQLGHTIGL 463 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717 G MG S H+ Y S +++ +++ + AS E+A+ER + +F S + Sbjct: 464 GAMGLHSYFAKNHMMYGSKDSIAFTSVYFMLLNYWTLKASNEIAKERHETFHNFDKSAYA 523 Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTA 770 G + D A+V+ EL N P W ELK V G+ + N MA+AP Sbjct: 524 DGRYFDRYTETDWRPTSAKVQ-ELFANVWLPAPEDWAELKTAVMQDGLYHQNRMAVAPNG 582 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ I + S+ P ++N +++R E I + Y Sbjct: 583 SISYINDTTASLHP---------------------IINRIEER---QEKKIGKIYYPAPY 618 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL------------- 877 + N D + +A++ D +I+ + QK +DQ SL L++ Sbjct: 619 LSN------DTMPYYKSAYDTDMRRVIDVYAAAQKHVDQGMSLTLFMRSTIPVGLYEWKD 672 Query: 878 ---DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 D+ + + L + A+ G+K+ YY+R+ Sbjct: 673 GRTDKMTTRDLSILRNYAFRKGIKSLYYVRT 703 >gi|325969910|ref|YP_004246101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta sp. Buddy] gi|324025148|gb|ADY11907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta sp. Buddy] Length = 836 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 157/601 (26%), Positives = 266/601 (44%), Gaps = 71/601 (11%) Query: 317 PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373 P RVA G+A E + + + EF LL + F+ L +GT ++ +C++ Sbjct: 86 PAQMLARVAKGIASIEKQEVRTQWETEFNWLLEDWKFVPGGRILTGAGTDQNLTYFNCYV 145 Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P D GI +L + + GG+G + + +R +++ G NG+S G + + + + Sbjct: 146 IPSPKDSRGGIIASLGQMTEIMSRGGGVGMNISSLRPRHSYVKGVNGRSSGSVSWGGLFS 205 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + QGG R+GA+ L WH D+ +F++ ++ G + + N + I D FM+ Sbjct: 206 FVTGLIEQGGSRRGALMLILNVWHPDIIDFINSKREMG----KITNANISVGITDDFMEA 261 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++A W + PD Y E++ + +A+ ++ V++ A +W ++ Sbjct: 262 VRKDANWDTYFPDTT---DPAYNTEWDGDINKW--KANGHKVVVYQTQKAKKIWDAIVES 316 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 + + P + F D N S + + S+N C E L VCNLGSINL Sbjct: 317 AWASAEPGVFFIDRYNKMSNSWYYSTIQSTNPCGEQGL----PPWGVCNLGSINLSRFVE 372 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 N + Y L +R AVR LDNVID + E+ KK + R IGLG MG L + + Sbjct: 373 NKKVLYKDLGRAVRAAVRFLDNVIDDTPYFFEENKKQQLSERRIGLGTMGLADMLIKMEL 432 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S E++ +E +FI + S S +LA+E+G++ F Q F Sbjct: 433 PYGSEESLTFIEELYKFICIESYSESSDLAKEKGSFPFFDAEKLLQSGF----------- 481 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 ++P +E+ +V+ G+RN + APT T + S I+P Y + + Sbjct: 482 --------MKQMP-EEICTKVRKQGLRNVTLLTQAPTGTTGTMVNTSTGIEPYYFWEWER 532 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G + +K D W +K H G ++ P +A ++ Sbjct: 533 TGRMGSN-------IERVKVYDDW-------VKAHPG-----QKKP----AYFVSAMDLA 569 Query: 853 PMWLIESASRRQKWIDQA-----QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRS 905 P ++ + QKW+D + + Y E +GK + +Y +G K TTY S Sbjct: 570 PEGHVKVQAAIQKWVDSSISKTGNTPKEYTIEQTGKLYELLYD----LGCKGGTTYRDGS 625 Query: 906 R 906 R Sbjct: 626 R 626 >gi|257080867|ref|ZP_05575228.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|256988897|gb|EEU76199.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] Length = 719 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D E+ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPSIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIARERNQVFHNFEKSDYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|300861975|ref|ZP_07108055.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|300848500|gb|EFK76257.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|323479609|gb|ADX79048.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis 62] Length = 719 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D E+ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSNYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|29375102|ref|NP_814255.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis V583] gi|227519133|ref|ZP_03949182.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX0104] gi|227553837|ref|ZP_03983886.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis HH22] gi|229548396|ref|ZP_04437121.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis ATCC 29200] gi|255971024|ref|ZP_05421610.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|256617389|ref|ZP_05474235.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256957627|ref|ZP_05561798.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256959664|ref|ZP_05563835.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|257080135|ref|ZP_05574496.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|257083551|ref|ZP_05577912.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|257085824|ref|ZP_05580185.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|257088967|ref|ZP_05583328.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257418243|ref|ZP_05595237.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257420750|ref|ZP_05597740.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis X98] gi|293384856|ref|ZP_06630699.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis R712] gi|293389146|ref|ZP_06633613.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis S613] gi|294780705|ref|ZP_06746066.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis PC1.1] gi|307268567|ref|ZP_07549939.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4248] gi|307275555|ref|ZP_07556696.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2134] gi|307288832|ref|ZP_07568810.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0109] gi|307290615|ref|ZP_07570523.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0411] gi|312904831|ref|ZP_07763971.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0635] gi|312908154|ref|ZP_07767132.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312979090|ref|ZP_07790805.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 516] gi|29342561|gb|AAO80326.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Enterococcus faecalis V583] gi|227073410|gb|EEI11373.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX0104] gi|227177090|gb|EEI58062.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis HH22] gi|229306612|gb|EEN72608.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis ATCC 29200] gi|255962042|gb|EET94518.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|256596916|gb|EEU16092.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256948123|gb|EEU64755.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256950160|gb|EEU66792.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256988165|gb|EEU75467.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|256991581|gb|EEU78883.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|256993854|gb|EEU81156.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|256997779|gb|EEU84299.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257160071|gb|EEU90031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257162574|gb|EEU92534.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis X98] gi|291077860|gb|EFE15224.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis R712] gi|291081517|gb|EFE18480.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis S613] gi|294452315|gb|EFG20756.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis PC1.1] gi|306498329|gb|EFM67838.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0411] gi|306500301|gb|EFM69640.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0109] gi|306507660|gb|EFM76789.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2134] gi|306515056|gb|EFM83599.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4248] gi|310625862|gb|EFQ09145.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 512] gi|310631837|gb|EFQ15120.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0635] gi|311288124|gb|EFQ66680.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 516] gi|315026266|gb|EFT38198.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2137] gi|315032245|gb|EFT44177.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0017] gi|315035531|gb|EFT47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0027] gi|315143981|gb|EFT87997.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2141] gi|315146929|gb|EFT90945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4244] gi|315155003|gb|EFT99019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0043] gi|315158780|gb|EFU02797.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0312] gi|315161037|gb|EFU05054.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0645] gi|315166221|gb|EFU10238.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1302] gi|315170810|gb|EFU14827.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1342] gi|315574920|gb|EFU87111.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0309B] gi|315576499|gb|EFU88690.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0630] gi|315582367|gb|EFU94558.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0309A] gi|327534209|gb|AEA93043.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis OG1RF] Length = 719 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D E+ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|215428499|ref|ZP_03426418.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T92] Length = 701 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 177/646 (27%), Positives = 284/646 (43%), Gaps = 81/646 (12%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 +I++ + + +DQ SL L+ D + + ++ AW G Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWAQG 666 >gi|289751723|ref|ZP_06511101.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T92] gi|289692310|gb|EFD59739.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T92] Length = 733 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 177/646 (27%), Positives = 284/646 (43%), Gaps = 81/646 (12%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 615 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851 +V++++ R +G IG + + +D + + A+EI Sbjct: 616 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 652 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 +I++ + + +DQ SL L+ D + + ++ AW G Sbjct: 653 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWAQG 698 >gi|146301801|ref|YP_001196392.1| ribonucleotide-diphosphate reductase subunit alpha [Flavobacterium johnsoniae UW101] gi|146156219|gb|ABQ07073.1| ribonucleoside-diphosphate reductase, alpha chain [Flavobacterium johnsoniae UW101] Length = 565 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 163/579 (28%), Positives = 252/579 (43%), Gaps = 106/579 (18%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F ++ S+P N GT SCF VPD + GI L E M K GG Sbjct: 67 FVEMIERGWMSISSPVWANMGTERGLPISCFNVHVPDKIEGITHKLGEVIMQTKIGGGTS 126 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G+ + NGKS G + F+K+ + ++QGG R+GA AYL+ H D+EE Sbjct: 127 GYFGELRERGSAVT-DNGKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIEE 185 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL + K+ G+ ++ T +PD +M+ Sbjct: 186 FLKI-KSIGNP---IQNLFTGICVPDYWMQ------------------------------ 211 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578 E + AD+ +I W K+L + G P+I F D N PQ + Sbjct: 212 -EMIDGDADKRQI-----------WAKVLESRQQKGLPYIFFSDNVNKNKPQVYKDQNLR 259 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +++SNLC+EI L S+ +E+ +C L S+NL ++ K ++ A+ LD V+ Sbjct: 260 INASNLCSEIMLPSTHDESFICCLSSMNL------ELYEEWKDTEAVKLAIFFLDAVLQE 313 Query: 639 NCHTIE------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 E A K HRA+GLG++G+ S L IP+ EA E + IS Sbjct: 314 FIEKTEGNYYLSAANKFAKRHRALGLGVLGWHSYLQKNMIPFEGMEAKMKTTEIFKHISD 373 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS ELA+ G KG Sbjct: 374 KADKASQELARIYGEPELLKG--------------------------------------- 394 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ MAIAPT + + I G S I+P N Y G+F N +L L+ Sbjct: 395 ---YGRRNTTTMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLE 451 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L +E + + + GS+ ++ ++ K + T EI + +++ A RQK++DQ Q Sbjct: 452 EKGLDNEEVWRGIMLNGGSVQHMSQLTQQEKDVFKTFKEISQLEIVQQAGIRQKFVDQGQ 511 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 SLNL + E + K ++ + +AW G+K+ YY RS+S + Sbjct: 512 SLNLNIPAELAIKDVNRLMIEAWQQGVKSLYYQRSQSVS 550 >gi|307249356|ref|ZP_07531350.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858650|gb|EFM90712.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 554 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 164/592 (27%), Positives = 261/592 (44%), Gaps = 116/592 (19%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ + +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D++E+LD+ + + + +W+ + AG Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + Y+RQ LW K+L ETG P++ FKD N P Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + VH+SNLCTEI L SSS+E+ VC L S+NLL +D+ T A V Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLY--------FDEWKDT--DAPEV 291 Query: 632 LDNVIDI----------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 L +D+ + +E+A + HRA+GLG++G+ S L +I + S +A++ Sbjct: 292 LTYFLDVVMSEFIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQ 351 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + + AS ELA+ G KG Sbjct: 352 KNSLIFKTLQEKTLKASQELAKRFGEPEILKG---------------------------- 383 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800 G RN+ M+IAPT + + I G VS S++P N YVK Sbjct: 384 --------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTV 429 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 N FL L+++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A Sbjct: 430 YKNPFLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQA 489 Query: 861 SRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 ++RQK+IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 490 AQRQKYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|227431270|ref|ZP_03913324.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353032|gb|EEJ43204.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 723 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 162/642 (25%), Positives = 282/642 (43%), Gaps = 77/642 (11%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y++Y L N + + + RVAM E A+ + + + +TP+ N Sbjct: 104 FYNQYALKTNDGAYYI-ETYEDRVAMNALYYADGNENLALRLADEMIHQRYQPATPSFLN 162 Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G R +L SCF+ DD+ I + L+K GG+G + + VR GA + G + Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNVREAGAPVMGIDN 222 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K D++ R + Sbjct: 223 AAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKKENADEKIRVKTL 282 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 + +PD F V QN LFSPD+V ++ +I E Y+ +I+ ++ Sbjct: 283 SLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQPFNYVDITAE-YDNMVANDKIRK-QR 340 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597 I A +L ++ + E+G+P+I D N +P G + SSNLC+EI + E Sbjct: 341 IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSEILQVQTPSEIDN 398 Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKA 646 CNLGSIN++ N F ++ T VR L V D N + Sbjct: 399 EQHYTKLGSDISCNLGSINIVNMMNTNDF-----GGSVDTMVRALTFVSDSSNLDVVPSI 453 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705 N AIGLG MG + + Y E+++ +++++I +S+ +A+ER Sbjct: 454 DLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTSTFFMMLNYYSIKSSMGIAKERH 513 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMR 759 + F S + G + + + E + + W +LK+ V GM Sbjct: 514 ETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVPTEQDWAQLKEDVAKYGMY 573 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N+ AIAPT +I+ + + S+ P +VN++++R E Sbjct: 574 NAYRHAIAPTGSISYVNDATASLLP---------------------IVNKIEER---QEG 609 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-- 877 MI + Y + N E +P + +A++ D +I+ + Q+ IDQ +L L++ Sbjct: 610 MIGKVYYPAPGLSN-ETMP-----YYVSAYDTDMRRVIDVYAAAQEHIDQGMALTLFMRS 663 Query: 878 --------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ + + L + A+ G+K+ YY+R+ Sbjct: 664 TLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT 705 >gi|53728875|ref|ZP_00348265.1| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207636|ref|YP_001052861.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae L20] gi|165975604|ref|YP_001651197.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251972|ref|ZP_07338143.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247134|ref|ZP_07529186.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307256173|ref|ZP_07537960.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260606|ref|ZP_07542298.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126096428|gb|ABN73256.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875705|gb|ABY68753.1| ribonucleoside-diphosphate reductase alpha subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649402|gb|EFL79587.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856383|gb|EFM88534.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306865354|gb|EFM97250.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869683|gb|EFN01468.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 554 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 164/588 (27%), Positives = 259/588 (44%), Gaps = 108/588 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ + +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSVIR-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D++E+LD+ + + + +W+ + AG Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + Y+RQ LW K+L ETG P++ FKD N P Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + VH+SNLCTEI L SSS+E+ VC L S+NLL FD K Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYF 295 Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 LD V+ + +E+A + HRA+GLG++G+ S L +I + S +A++ + Sbjct: 296 LDVVMSEFIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNL 355 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + + + AS ELA+ G KG Sbjct: 356 IFKTLQEKTLKASQELAKRFGEPELLKG-------------------------------- 383 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804 G RN+ M+IAPT + + I G VS S++P N YVK N Sbjct: 384 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 433 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 FL L+++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A++RQ Sbjct: 434 FLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQ 493 Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 K+IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 494 KYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|256963239|ref|ZP_05567410.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|307272282|ref|ZP_07553542.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0855] gi|312952107|ref|ZP_07770988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0102] gi|256953735|gb|EEU70367.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|306511171|gb|EFM80181.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0855] gi|310629889|gb|EFQ13172.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0102] gi|315153941|gb|EFT97957.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0031] Length = 719 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D E+ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKNGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|110681184|ref|YP_684191.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh 114] gi|109457300|gb|ABG33505.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh 114] Length = 832 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 160/598 (26%), Positives = 256/598 (42%), Gaps = 86/598 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E E +FY L F ++ + +GT R L +CF + TVPD + Sbjct: 37 RIARDLARVEKTPEVWEEKFYAALEDFKYLPAGRITAGAGTARSVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H DVE+F+ + D R N + I D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMSVLITDPFMEAVKADGPWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L + KV+R + A LW +++ ++ P Sbjct: 213 LVF-----------------------------DGKVYRTVQARDLWNRIMQATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + + ++N C E L C LGSIN LA +N F Sbjct: 244 VIFIDRINQANNLSYCETIAATNPCGEQPL----PPYGACLLGSIN-LARLVSNPFEDTA 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D L + TAVR++DNV+D + +E + R IGLG+ G AL ++ + Y Sbjct: 299 ALDEAALDDLVATAVRMMDNVVDASKFPLEAQAREAQAKRRIGLGVTGLADALLMMGLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA D + I+ A ASV+LA+E+GA+ F D Sbjct: 359 GSDEAARQTDRWLHSIARAAYLASVDLAREKGAFPLFDA--------------------D 398 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 + + T + ++++ V+ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 399 KYLASGTMQAMDEDVRDAVREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D + +V+ Q LW E K+ D + +PD A + P Sbjct: 459 VLQKDGSRTEEEVVDYAVQ--LWRE------KFGD------KELPD----YFVNAQTLAP 500 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + ++ + QKW+D + S + E G +Y +AW G K R + T Sbjct: 501 LEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYMEAWDSGCKGCTTYRPNAVTG 558 >gi|229547641|ref|ZP_04436366.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX1322] gi|255973537|ref|ZP_05424123.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256761392|ref|ZP_05501972.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256852444|ref|ZP_05557820.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis T8] gi|307282793|ref|ZP_07562993.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0860] gi|312900213|ref|ZP_07759525.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0470] gi|229307133|gb|EEN73120.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX1322] gi|255966409|gb|EET97031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256682643|gb|EEU22338.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256712298|gb|EEU27330.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis T8] gi|306503649|gb|EFM72880.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0860] gi|311292574|gb|EFQ71130.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0470] gi|315028519|gb|EFT40451.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4000] gi|315167730|gb|EFU11747.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1341] Length = 719 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D E+ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIKKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|260202189|ref|ZP_05769680.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T46] Length = 694 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583 >gi|254467219|ref|ZP_05080630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacterales bacterium Y4I] gi|206688127|gb|EDZ48609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacterales bacterium Y4I] Length = 765 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 162/610 (26%), Positives = 267/610 (43%), Gaps = 90/610 (14%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I++ + + R+A LA E + + +FY L F ++ + +GT Sbjct: 19 FKQADGAPIDVTVEDTWRRIARDLARAEKKPDAWEEKFYAALEDFKYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + T+PD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RQVTLFNCFVMGTIPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H D+E F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEHFITAKS----DPARLRMFNMS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W E+ ++ KV+ + A Sbjct: 195 VLVTDDFMEAVKADGSW-------------------ELQFDG----------KVYHTVEA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW K++ ++ P + F D N + ++ + ++N C E L C L Sbjct: 226 RDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSIN+ A N F+ D + + TAVR++DNV+D++ ++ + R I Sbjct: 282 GSINM-ARLVANPFEKDAHLDQAAMQELVATAVRMMDNVVDVSKFPLDAQAEEAKNKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL +L + Y S EA DE + I+ A ASVELA+E+GA+ F Sbjct: 341 GLGVTGLADALLMLGLEYGSDEAARQTDEWLHAIARAAYLASVELAKEKGAFPLFDA--- 397 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANI 775 E +N + L DE ++ ++ G+RN+ +IAPT TI+ Sbjct: 398 ------------------EKYLNSGNMLNMDEDVRDAIREHGIRNALLTSIAPTGTISLY 439 Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 G VS I+P + Y + + D + +V+ Q ++ E +D K Sbjct: 440 AGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGADAK--------- 488 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893 +PD A + P ++ + QKWID + S + E S +Y QAW Sbjct: 489 --LPD----YFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQAW 542 Query: 894 LMGLK--TTY 901 G K TTY Sbjct: 543 DQGCKGCTTY 552 >gi|314933043|ref|ZP_07840409.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus caprae C87] gi|313654362|gb|EFS18118.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus caprae C87] Length = 701 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 162/614 (26%), Positives = 276/614 (44%), Gaps = 64/614 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382 VA+ LA +T K+A +F + + + +TPT N+G R +L SCFL V D L Sbjct: 126 VALYLANGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNS 182 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I L+K GG+ + + +R G I G G ++GV+P K +Q G Sbjct: 183 INFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLG 242 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R GA YL +H DVEEFLD +K D+ R ++T +P F + + +F Sbjct: 243 QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKERKDFYMF 302 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P V + + + ++ + Y+ I +K A + + ++G+P++ Sbjct: 303 APHTVKQEYGVTLDDIDLE-KYYDDMVANPNIDK-KKKDAREMLNTIAQTQLQSGYPYLM 360 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAH 610 FKD N +G + SNLCTEI +N + + CNLGS+N++ Sbjct: 361 FKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIV-- 418 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N + K ++ T + L V D N KK+N ++GLG+M L Sbjct: 419 ---NVMESGKFKDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAK 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723 I Y S EA + A+ +++++I S+E+A+ERG +Y F S + G + Sbjct: 476 NKIGYESEEAKDFANIFFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSQ 535 Query: 724 DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + +VR ++ + W L+K V+ G+ ++ +AIAPT +I+ + + S+ Sbjct: 536 EFEPQFEKVRQLFDGLDIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSV 595 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P +V+++++R + + + + + Sbjct: 596 MP---------------------IVDQIERRTYGNAETFYPMPF----------LSPETM 624 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901 + +AF D M LI+ S Q +DQ S LY++ E S ++L +Y A GLK+ Y Sbjct: 625 WYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLY 684 Query: 902 YLRSRSATSVEKST 915 Y R++ SVE+ T Sbjct: 685 YTRNK-LLSVEECT 697 >gi|163738452|ref|ZP_02145867.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis BS107] gi|161388373|gb|EDQ12727.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis BS107] Length = 765 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 163/610 (26%), Positives = 271/610 (44%), Gaps = 91/610 (14%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I+ + + R+A LA E++ + +FY L F ++ + +GT Sbjct: 19 FKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H D+E F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAKS----DPARLRMFNMS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W E+ ++ KV++ + A Sbjct: 195 VLVTDPFMEAVKADGSW-------------------ELIFDG----------KVYQTVQA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW K++ ++ P + F D N + +V + ++N C E L C L Sbjct: 226 RDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSINL A N F D + L + TAVR++DNV+D++ ++ + R I Sbjct: 282 GSINL-ARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL +L + Y S EA ++ + I+ A ASV+LA+E+GA+ F Sbjct: 341 GLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLF----- 395 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANI 775 D+ LA + + DE ++ ++ G+RN+ +IAPT TI+ Sbjct: 396 -------DADAYLAS---------GTMMDMDEDVRDAIREHGIRNALLTSIAPTGTISLY 439 Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 G VS I+P + Y + + D + +V+ Q +W + K+ D Sbjct: 440 AGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRD------KFGD------ 485 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893 + +PD A + P ++ + QKWID + S + E S +Y QAW Sbjct: 486 KELPD----YFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQAW 541 Query: 894 LMGLK--TTY 901 +G K TTY Sbjct: 542 DLGCKGCTTY 551 >gi|71906603|ref|YP_284190.1| ribonucleotide reductase large subunit [Dechloromonas aromatica RCB] gi|71846224|gb|AAZ45720.1| Ribonucleotide reductase large subunit [Dechloromonas aromatica RCB] Length = 964 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 172/603 (28%), Positives = 268/603 (44%), Gaps = 75/603 (12%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFH-FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380 RVA LA E E ++ E L + + F+ + +GT L +CF+ V D + Sbjct: 50 RVAYALAQVEQEADRAHWENKFLWAQENGFIPAGRINSAAGTDLQATLINCFVQPVGDSI 109 Query: 381 Y-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 GI+ AL + A + GG+G D++ +R GA + GT ++ G + +++V + Sbjct: 110 VENTEGKPGIYTALAQAAETMRRGGGVGYDFSSIRPQGARVKGTQSRASGPVSYMRVFDR 169 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + V G R+GA L H D+EEF+ K+ GD + N + + D FM+ V Sbjct: 170 SCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDKGD----LTNFNISIGVTDPFMEAV 224 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + +V LH A Y+R+ I V+RK+ A LW +++ Sbjct: 225 DADG--------DVELLHRAEPNADMRAAGAYQREDG---IWVYRKVRARDLWDQVMKST 273 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P I F D N + + V+ ++N C E L C LGSINL + + Sbjct: 274 YDHAEPGILFLDRMNKDNNLNYCEVIEATNPCAEQPL----PPYGCCCLGSINLTLYVKD 329 Query: 614 N-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +FD+D A IR + R+LDNV+D +E+ ++ R +GLG G AL Sbjct: 330 AFSEQAEFDFDAFAEVIRISTRMLDNVLDATHWPLERQQQEAANKRRVGLGYTGLGDALA 389 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y PEA +A EF+ A SVE+A+ERGA+ F L+ G Sbjct: 390 MLRLRYDKPEARAMAARISEFMRDTAYMYSVEMAKERGAFPLFNAELYLSG--------- 440 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786 N SRLP D +K ++ G+RNS+ ++IAPT TI A S I+P + Sbjct: 441 ---------GNFASRLPTD-VKAEIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPF 490 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 Y + D T + + V + R L H G G++ ++PD Sbjct: 491 SWTYNRKKRMQDGT-IKEYSVEDYAWR----------LYKHRG--GDVSKLPD----FFV 533 Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 TA EI + + +ID ++++N+ D P D +Y AW GLK R Sbjct: 534 TALEISAQAHSDMVAAVAPFIDTSISKTVNVPADYPYTDFQD-LYMSAWKSGLKGLATYR 592 Query: 905 SRS 907 S Sbjct: 593 PNS 595 >gi|329736710|gb|EGG72975.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU028] Length = 701 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 160/609 (26%), Positives = 272/609 (44%), Gaps = 77/609 (12%) Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571 + ++ + Y+ I +K + R+ML M+ +T G+P++ FKD N Sbjct: 316 DDIDLE-KYYDDMVANPNIDKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 369 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 ++G + SNLCTEI +N E + CNLGS+N++ + +F Sbjct: 370 ANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGEF--- 426 Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++ T + L V D N KK+N ++GLG+M L I Y S E Sbjct: 427 --RDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 484 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 A + A+ +++++I S+E+A+ERG Y F+ S + G + E Sbjct: 485 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 540 Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + +L W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 541 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 597 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +V+++++R + + + + + + + Sbjct: 598 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 629 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 AF D M LI+ + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 630 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 Query: 907 SATSVEKST 915 SVE+ T Sbjct: 690 -LLSVEECT 697 >gi|223042914|ref|ZP_03612962.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus capitis SK14] gi|222443768|gb|EEE49865.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus capitis SK14] Length = 701 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 162/614 (26%), Positives = 276/614 (44%), Gaps = 64/614 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382 VA+ LA +T K+A +F + + + +TPT N+G R +L SCFL V D L Sbjct: 126 VALYLANGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNS 182 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I L+K GG+ + + +R G I G G ++GV+P K +Q G Sbjct: 183 INFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLG 242 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R GA YL +H DVEEFLD +K D+ R ++T +P F + + +F Sbjct: 243 QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMF 302 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P V + + + ++ + Y+ I +K A + + ++G+P++ Sbjct: 303 APHTVKQEYGVTLDDIDLE-KYYDDMVANPNIDK-KKKDAREMLNTIAQTQLQSGYPYLM 360 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAH 610 FKD N +G + SNLCTEI +N + + CNLGS+N++ Sbjct: 361 FKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIV-- 418 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N + K ++ T + L V D N KK+N ++GLG+M L Sbjct: 419 ---NVMESGKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAK 475 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723 I Y S EA + A+ +++++I S+E+A+ERG +Y F S + G + Sbjct: 476 NKIGYESEEAKDFANIFFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSK 535 Query: 724 DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 + +VR ++ + W L+K V+ G+ ++ +AIAPT +I+ + + S+ Sbjct: 536 EFEPQFEKVRQLFDGLDIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSV 595 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P +V+++++R + + + + + Sbjct: 596 MP---------------------IVDQIERRTYGNAETFYPMPF----------LSPETM 624 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901 + +AF D M LI+ S Q +DQ S LY++ E S ++L +Y A GLK+ Y Sbjct: 625 WYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLY 684 Query: 902 YLRSRSATSVEKST 915 Y R++ SVE+ T Sbjct: 685 YTRNK-LLSVEECT 697 >gi|317495972|ref|ZP_07954334.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424] gi|316913876|gb|EFV35360.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424] Length = 696 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 166/591 (28%), Positives = 269/591 (45%), Gaps = 75/591 (12%) Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG +R +L SCFL V D L I L+K GG+ + + +R G Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G ++GVIP K +Q G+R GA YL +H DV EFLD +K D+ Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R ++T +P LF +N + +F P + + + L + +IA E A+ Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKEFYMFGPHSIYEEYGLVLDDIDIAEYYDEFVANEN 327 Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 IK RK A R ML ++ +T G+P++ FKD N + +G V SNLCTEI Sbjct: 328 IIK--RKFDA----RDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEI 381 Query: 589 TLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +ET+V CNL S+N++ N + KL +I + + L Sbjct: 382 F---QLQETSVIKDYGESDVIKRDISCNLASLNIV-----NVMESKKLKESIYSGMDALT 433 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D K+N ++GLG M L I Y S EA + A+ +++ Sbjct: 434 FVSDSTKIKNAPGVVKANEEFHSVGLGAMNLNGYLAKNLIAYDSEEAKDFANVFFMMMNY 493 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLP 745 + I S+++A+ER + F+ S + G + D + +V++ + ++ Sbjct: 494 YTIERSMQIAKERKETFKDFEKSDYYNGAYFTKYITNDYLPKSDKVKELFEGIYIPTKED 553 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK RVK G+ ++ MAIAPT +I+ + + S+ P Sbjct: 554 WHSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLP--------------------- 592 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 +V+++++R + + Y + + + +AF +D M LI+ + Q+ Sbjct: 593 IVDKIERRSYGNAETFYPMPY----------LSPKTQWYYKSAFTMDQMKLIDLMAVIQE 642 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 IDQ S+ LY++ + + ++L Y A GLK+ YY R++ SVE+ T Sbjct: 643 HIDQGISVILYVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692 >gi|325955615|ref|YP_004239275.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa DSM 16922] gi|323438233|gb|ADX68697.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa DSM 16922] Length = 562 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 159/579 (27%), Positives = 251/579 (43%), Gaps = 110/579 (18%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F ++ S+P N GT SCF +PD + GI L E M K GG Sbjct: 64 FKEMIERGWMSLSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTS 123 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G+ + NGKS G + F+K+ + ++QGG R+GA AYL+ H D+EE Sbjct: 124 GYFGELRERGSAVT-DNGKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIEE 182 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL + K+ G+ ++ +PD +M+ + Sbjct: 183 FLKI-KSIGNP---IQNLFYGVCVPDYWMQEMIDG------------------------- 213 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578 + +W K+L E G P+I F D N PQ + + Sbjct: 214 -----------------DVEKRNIWAKVLESRQEKGLPYIFFSDNVNKNKPQVYKDLNMR 256 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +++SNLC+EI L SS +E+ +C L S+NL +D K +R A+ LD V+ Sbjct: 257 INASNLCSEIMLPSSRDESFICCLSSMNL------ELYDEWKDTEAVRLAIFFLDAVLQE 310 Query: 639 NCHTIE------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 E A + HRA+GLG++G+ S L IP+ EA E + I Sbjct: 311 FIEKTEGNYYLTAANRFAKRHRALGLGVLGWHSYLQKNMIPFEGMEAKLRTTEIFKHIQS 370 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS ELA+ G KG Sbjct: 371 KADKASEELARIYGEPELLKG--------------------------------------- 391 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ +AIAPT + + I G S I+P N Y G+F N +L L+ Sbjct: 392 ---YGRRNTTTLAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLE 448 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ + +E + + + GS+ +I + ++ K + T EI + +++ A+ RQK++DQ+Q Sbjct: 449 EKGMDNEDVWRGIMLNGGSVQHIAELTENEKAVFKTFKEISQLEIVQQAAIRQKFVDQSQ 508 Query: 872 SLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRS 907 SLNL + P+ K+++ + +AW +G+KT YY RS+S Sbjct: 509 SLNLNI--PANLPVKEVNRLMIEAWQLGVKTLYYQRSQS 545 >gi|224475872|ref|YP_002633478.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus carnosus subsp. carnosus TM300] gi|222420479|emb|CAL27293.1| ribonuceloside diphosphate reductase alpha chain [Staphylococcus carnosus subsp. carnosus TM300] Length = 698 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 170/679 (25%), Positives = 294/679 (43%), Gaps = 77/679 (11%) Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 Y + F +Y EE +K + F + K+ +D+A + + + Y H+ Sbjct: 62 FYVDVFAQYSEEDLKELTDFARSIPFKFASYMSASKFFKDYALKTNDKKQYLEDYSQHV- 120 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLS 369 + L L + +KE +A +F + + + +TPT N+G R +L Sbjct: 121 -------------TIVSLYLADGDKE-QARQFISSMIEQRYQPATPTFLNAGRARRGELV 166 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D L I L+K GG+ + + +R G I G G ++GV+P K Sbjct: 167 SCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAK 226 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 +Q G+R GA YL +H DVEEFLD +K D+ R ++T +P F Sbjct: 227 SLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDIRLSTISTGLIVPAKF 286 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRK 548 + + +F+P V ++ YG +I + Y + + K A + Sbjct: 287 FELAKNGEDFYMFAPHTV---YNEYGVTLDDIDLDKYYDDMVKNPNILKHKKDAREMLNT 343 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-- 599 + ++G+P++ FKD N ++G + SNLCTEI +N E + Sbjct: 344 IAQTQLQSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKR 403 Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N++ N + K ++ T + L V D N +K+N + Sbjct: 404 DISCNLGSLNIV-----NVMESGKFRDSVHTGMDALTVVSDEANIQNAPGVRKANSELHS 458 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714 +GLG+M L I Y S EA + A+ +++++I S++ A+ERG AY F S Sbjct: 459 VGLGVMNLHGYLAKNQIGYESEEAKDFANIFFMTMNYYSIERSMQTAKERGQAYQDFDKS 518 Query: 715 LWDQGVF--PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAP 768 + G + ++ E ++ +P W L+K VK G+ ++ +AIAP Sbjct: 519 DYASGKYFEKYTQADIVPEYEKVKSLFEGLEIPTAEDWKTLEKDVKEYGLYHAYRLAIAP 578 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T +I+ + + S+ P +V+++++R + + + Sbjct: 579 TQSISYVQNATSSVMP---------------------IVDQIERRTYGNSETFYPMPF-- 615 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 + + +AF D M LI+ + Q+ +DQ S LY++ E S ++L Sbjct: 616 --------LSPQTMWYYKSAFNTDQMRLIDLVATIQQHVDQGISTILYVNSEISTRELSR 667 Query: 888 IYRQAWLMGLKTTYYLRSR 906 +Y A GLK+ YY R++ Sbjct: 668 LYVYAHHKGLKSLYYTRNK 686 >gi|289167886|ref|YP_003446155.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus mitis B6] gi|288907453|emb|CBJ22290.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus mitis B6] Length = 719 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 177/660 (26%), Positives = 290/660 (43%), Gaps = 88/660 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IYQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQ---GVFPIDSIGLLAEVRDELAMN 739 +++ + S +A+ERG + +F KGS +D+ G F S + +D Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYITGEFIPKSDRVKELFKDVFI-- 552 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 S W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 553 -PSAADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E I + Y + + E IP + +A+++D +I+ Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|226312722|ref|YP_002772616.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus brevis NBRC 100599] gi|226095670|dbj|BAH44112.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus brevis NBRC 100599] Length = 694 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 169/656 (25%), Positives = 295/656 (44%), Gaps = 71/656 (10%) Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQA--FFMRVAMGLALKETEKEKRAVE 341 L Y+ DF F Y+ + Y Y L N + + Q VA+ L + + KR Sbjct: 76 LAYDADFQFASYMAISKFYKDYALKTNDKSMYLEQYPDRVAVVALSLGQGDFDLAKRLT- 134 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +++ +TPT N+G +R ++ SCFL + D L I L L+K GG+ Sbjct: 135 -VSMMDQ-RLQPATPTFLNAGKSRRGEMVSCFLLEMDDSLNSINFILGTCMQLSKIGGGV 192 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +RG G I G G ++GV+P LK+ D +Q G+RKG+ AY + D+ Sbjct: 193 AVNLSKLRGRGEPIKGVEGAAKGVMPVLKLLEDAFSYADQMGQRKGSGAAYYNIFGWDIN 252 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P++F K +N T+F+P V + ++ + ++ Sbjct: 253 EFLDCKKINADEKARIKTLSIGLIVPNVFYKLAEENKPLTVFAPYSVYKEYGVHLDDMDL 312 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E YE IK +SA + K+ + E+G+P+I K N + +G V Sbjct: 313 D-EMYEELLANDRIKKKTVMSAREMLTKIAMIQMESGYPYIMNKTNANNNHALKDLGSVK 371 Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLCTEI T+ + E + CNL S+N++ N + + ++ Sbjct: 372 MSNLCTEIFQLQETSTITNYGEMDIIRRDISCNLASLNIV-----NVMERKMIRESVHEG 426 Query: 629 VRVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + + V D+ N ++KA + H+ +GLG M L I Y S EA + A Sbjct: 427 IEAITAVSDMTRVENAPGVQKANRELHS---VGLGAMNLNGYLAKNRIAYESEEAKDFAR 483 Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------ 737 ++F+++ S+E+A+E G + F+ S + +G + + R E A Sbjct: 484 TFFMMMNFYSLEKSMEIARETGMTFLGFEQSEYAKGTYFNKYVTNDYSPRTEKAKLLFEG 543 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 M+ + W EL+++V+ G+ ++ +AIAPT +I+ I + S+ P Sbjct: 544 MHIPTPADWAELQQKVQKHGVYHAYRLAIAPTQSISYIQNATSSVMP------------- 590 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +V ++ R + + Y + + + +A+ ID +I Sbjct: 591 --------IVEHIETRTYANSTTYYPMPY----------LSQENYFYYKSAYVIDQFKVI 632 Query: 858 ESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + + Q+ IDQ S L+++ S ++L Y A GLK+ YY R++ T E Sbjct: 633 DLIAEIQEHIDQGISTVLHVNSNISTRELARYYIYAAKKGLKSLYYTRTKHLTVEE 688 >gi|289444614|ref|ZP_06434358.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium tuberculosis T46] gi|289417533|gb|EFD14773.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium tuberculosis T46] Length = 726 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615 >gi|163742138|ref|ZP_02149526.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis 2.10] gi|161384468|gb|EDQ08849.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis 2.10] Length = 765 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 162/610 (26%), Positives = 271/610 (44%), Gaps = 91/610 (14%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I+ + + R+A LA E++ + +FY L F ++ + +GT Sbjct: 19 FKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H D+E F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAKS----DPARLRMFNMS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W E+ ++ K+++ + A Sbjct: 195 VLVTDPFMEAVKADGSW-------------------ELIFDG----------KIYQTVQA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW K++ ++ P + F D N + +V + ++N C E L C L Sbjct: 226 RDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSINL A N F D + L + TAVR++DNV+D++ ++ + R I Sbjct: 282 GSINL-ARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL +L + Y S EA ++ + I+ A ASV+LA+E+GA+ F Sbjct: 341 GLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLF----- 395 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANI 775 D+ LA + + DE ++ ++ G+RN+ +IAPT TI+ Sbjct: 396 -------DADAYLAS---------GTMMDMDEDVRDAIREHGIRNALLTSIAPTGTISLY 439 Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 G VS I+P + Y + + D + +V+ Q +W + K+ D Sbjct: 440 AGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRD------KFGD------ 485 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893 + +PD A + P ++ + QKWID + S + E S +Y QAW Sbjct: 486 KELPD----YFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQAW 541 Query: 894 LMGLK--TTY 901 +G K TTY Sbjct: 542 DLGCKGCTTY 551 >gi|70727161|ref|YP_254077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus haemolyticus JCSC1435] gi|68447887|dbj|BAE05471.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus haemolyticus JCSC1435] Length = 701 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 176/659 (26%), Positives = 290/659 (44%), Gaps = 83/659 (12%) Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347 +F F Y+ Y Y L N + + + + VA+ L L + K+ +A +F + Sbjct: 89 NFEFASYMSASKFYKDYALKTN-DKSQYLEDYNQHVAIVALYLADGNKQ-QAKQFILAMV 146 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TPT N+G R +L SCFL V D L I L+K GG+ + + Sbjct: 147 EQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSK 206 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD + Sbjct: 207 LRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTK 266 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525 K D+ R ++T +P F + + +F+P V YG +I E Y Sbjct: 267 KVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK---QEYGVTLDDIDLEKY 323 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHS 581 V +K A R+ML M+ +T G+P++ FKD N ++G + Sbjct: 324 YDDMVANPNIVKKKKDA----REMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKM 379 Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI +N E + CNLGS+N++ N + K+ ++ T + Sbjct: 380 SNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIV-----NVMETGKIKDSVHTGM 434 Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D N +K+N ++GLG+M L I Y S EA + A+ Sbjct: 435 DALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFM 494 Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--- 744 +++++I S+E+A+ERG Y F+ S + G + E + RL Sbjct: 495 MMNYYSIERSMEIAKERGEVYQDFEQSDYASGKY----FEFYTSQEFEPKFEKVKRLFDH 550 Query: 745 -------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 W L+++V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 551 IDIPTAKDWKALQEQVQQHGLYHAYRLAIAPTQSISYVQNATSSVMP------------- 597 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +V+++++R + + + + + + +AF D M LI Sbjct: 598 --------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFNTDQMKLI 639 Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ SVE+ T Sbjct: 640 DLIATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697 >gi|215447327|ref|ZP_03434079.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T85] Length = 699 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDRIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583 >gi|296316021|ref|YP_003662485.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 5] gi|40456144|gb|AAR86122.1| UL39 ribonucleotide reductase large subunit [Bovine herpesvirus 5] Length = 800 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 172/662 (25%), Positives = 296/662 (44%), Gaps = 70/662 (10%) Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLA---LKET--------EKEKRAVE 341 LGLQ + Y+ +L + G +E FF+R+A A ++E E Sbjct: 146 LGLQSALKYEEMYLAKLEGGALESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAV 205 Query: 342 FYNLLSSFH---FMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396 F L++ + + +TP + +G L+SC+L V + E A + Sbjct: 206 FNAYLTALYRQLVVPATPIMLFAGRARGSLASCYLLNPQVTSSTEAVEAITTEVARILLN 265 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+G + L + +G++ LK+ + A+A+N +R +C Y+E WH Sbjct: 266 RGGIGISFQSFNRLA-----SRDCKRGIMGALKLLDSMAMAINSDSERPTGICVYIEPWH 320 Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSD 509 DV L++R D+ R ++ + W+PDL R + WTLF D S Sbjct: 321 CDVRAVLNMRGMLARDESTRCDNLFSCLWVPDLLFDRYLAYLEGCEGVVWTLFD-DRASH 379 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 L L+G F YE ER+ E + ++ + + + + M TG P++ FKD CN Sbjct: 380 LSRLHGPAFAAEYERLEREGLGVEAVPVQDLAFLVV--RSIVM---TGSPFVMFKDACNR 434 Query: 570 RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 G + SNLCTEI + + VCNL S+NL + FD+ L++ Sbjct: 435 HYHMDTAGDALTGSNLCTEIVQRADPDAHGVCNLASVNLPRCVREGEGGALAFDFAALST 494 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TA ++ ++ + E+A + HR++G+G G + L L + SP A + Sbjct: 495 AAATAAIFVNAMMLGGQYPTERAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLN 554 Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRT 741 E E + ++ S L + A + F S + +G+ P D G++ L++ R Sbjct: 555 VEIAERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYEGVV------LSLPRA 608 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W L+++V G+ N+ +A+ PT + + + S+ P + N++ K MSG+ Sbjct: 609 ----WARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLR 664 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWL 856 N L+ L++ + + + ++ D ++ DL H TAFE D L Sbjct: 665 PNLPLMRALRKHFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERL 724 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLD-------FIYRQAWLMGLKT-TYYLRSRSA 908 I+ + R ++DQ+QS++L++ EP K+ +Y A+ GLKT YY + R A Sbjct: 725 IDLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVY--AYKKGLKTGLYYCKIRKA 782 Query: 909 TS 910 T+ Sbjct: 783 TN 784 >gi|289759176|ref|ZP_06518554.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T85] gi|289714740|gb|EFD78752.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T85] Length = 693 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDRIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583 >gi|260206384|ref|ZP_05773875.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis K85] Length = 751 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 69 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583 >gi|322389172|ref|ZP_08062733.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus parasanguinis ATCC 903] gi|321144077|gb|EFX39494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus parasanguinis ATCC 903] Length = 719 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 174/657 (26%), Positives = 291/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E+ A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEEIAKDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E + CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F + G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYTTGAFVPKSDRVKELFKDIFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|4490609|emb|CAB38642.1| ribonucelotide reductase major subunit [Staphylococcus aureus] Length = 718 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 278/608 (45%), Gaps = 77/608 (12%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ + + L V D+ N +K+N ++GLG+M L I Y S EA Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502 Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728 + A+ ++F++I S+E+A+ERG Y F+ S + G + P Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + E+ D +A+ + W +L++ V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+++++R + + + + +A Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYCKSA 647 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 F D M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706 Query: 908 ATSVEKST 915 SVE+ T Sbjct: 707 LLSVEECT 714 >gi|257870056|ref|ZP_05649709.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] gi|257804220|gb|EEV33042.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] Length = 719 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 171/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F F+ ++ Y +Y L N + +++ RVA E+ A+ + + Sbjct: 88 EQHFTFKSFMAAYKFYSQYALKTNDGTAYL-ESYEDRVAFNALYFADGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL + DD+ I + L++ GG+G + Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNAIGRGINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGIPFSYIDITKE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DNLVMNPNIRK-TKIKARDLENEISKLQQESGYPYIINIDTANRSNPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N D ++R R L Sbjct: 383 SEILQVQEPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + +I+ NHT IGLG MG + + Y SPE++E D Sbjct: 438 FVTDASDIDVVPSIQNGNALNHT---IGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G + D I G D++ A+ +P Sbjct: 495 LNYWTLVESNNIAKERGEVFHNFEKSAYADGSYFTDYITGDYQPKSDKIKALFDGVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L + VK G+ + N +A+AP +I+ I S SI P Sbjct: 555 GEDWAALAEAVKKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N D + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN------DTIGYYRSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 QK +DQ S+ L++ D P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQKHVDQGMSMTLFMRSDIPEGLYEWKETSKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|254233681|ref|ZP_04927006.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis C] gi|124599210|gb|EAY58314.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis C] Length = 732 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615 >gi|297519662|ref|ZP_06938048.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli OP50] Length = 513 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 154/549 (28%), Positives = 252/549 (45%), Gaps = 67/549 (12%) Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 1 KRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHA 60 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +Y Sbjct: 61 HHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVY 117 Query: 515 GKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 GK F ++A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 118 GKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI 177 Query: 574 QHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKL 621 G ++ SNLC+EI +NS+SE CNLGS+N +AH D Sbjct: 178 --AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDF 230 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 A T+ TAVR L V D+ + ++ + N AIGLG M L I Y SPEA+ Sbjct: 231 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 290 Query: 681 EIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAE 731 + + I++HA+ S+ LA+ERG ++ FK S + G + + + E Sbjct: 291 DFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 350 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + +R W +L+ V G+ N N A+ PT +I+ I + SI P + + Sbjct: 351 LFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 410 Query: 792 -KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K +G F+ NE + A+ D A+E Sbjct: 411 RKEGKTGRVYYPAPFMTNE-------NLALYQD------------------------AYE 439 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 I +I++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 440 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-M 498 Query: 910 SVEKSTLKG 918 ++E + ++G Sbjct: 499 ALEGTEIEG 507 >gi|289575761|ref|ZP_06455988.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis K85] gi|289540192|gb|EFD44770.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis K85] Length = 783 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615 >gi|322376537|ref|ZP_08051030.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. M334] gi|321282344|gb|EFX59351.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. M334] Length = 719 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 177/660 (26%), Positives = 290/660 (43%), Gaps = 88/660 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQ---GVFPIDSIGLLAEVRDELAMN 739 +++ + S +A+ERG + +F KGS +D+ G F S + +D Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFI-- 552 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 S W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 553 -PSAADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E I + Y + + E IP + +A+++D +I+ Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|260432613|ref|ZP_05786584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Silicibacter lacuscaerulensis ITI-1157] gi|260416441|gb|EEX09700.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Silicibacter lacuscaerulensis ITI-1157] Length = 760 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 158/590 (26%), Positives = 256/590 (43%), Gaps = 86/590 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + +FY L F ++ + +GT R L +CF + T+PD + Sbjct: 37 RIARDLARVEKDPAHWEQKFYEALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTIPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA +HG + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVHGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V +A W Sbjct: 157 AGSRRGAMMATMRCDHPDIEQFITAKS----DPARLRMFNMSVLVTDAFMEAVKADASWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L + KV+ + A LW K++ ++ P Sbjct: 213 LVF-----------------------------DGKVYHTVQARDLWNKIMQATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFANN-Q 615 + F D N + + + ++N C E L C LGSINL A F + Q Sbjct: 244 VIFIDRINQANNLSYAETIAATNPCGEQPL----PPYGACLLGSINLARLVSAPFEDAAQ 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L + TAVR++DNV+D + + + R IGLG+ G AL +L + Y Sbjct: 300 LDEAALQELVATAVRMMDNVVDASKFPLPQQAAEAQAKRRIGLGVTGLADALLMLGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + I+ A ASV+LA+E+GA+ F + Sbjct: 360 SDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFDAEKY------------------- 400 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 LA ++ D++++ ++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 401 LASGTMQQMD-DDVREAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +V+ Q +W + G++E +PD A + P Sbjct: 460 LQKDGSRTEEEVVDYAVQ--MWRD-----------KFGDVE-LPD----YFVNAQTLTPA 501 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 ++ + QKWID + S + E S +Y QAW G K TTY Sbjct: 502 EHVKMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQAWDQGCKGCTTY 551 >gi|168493104|ref|ZP_02717247.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC3059-06] gi|183576680|gb|EDT97208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC3059-06] Length = 719 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 174/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMKDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPG 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 VADWTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|257415188|ref|ZP_05592182.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis AR01/DG] gi|257157016|gb|EEU86976.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ARO1/DG] Length = 719 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 175/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%) Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318 E+ ++ + + MDF + +Y D ++ F F+ ++ Y +Y L N + E + Sbjct: 63 EDFIETEFIEKYSMDFIEKLYAFLD---KQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377 + RVA E+ A+ + + + +TP+ N+G R +L SCFL V Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DD+ I ++ L++ GG+G + +R GA I G +G + GV+P +K+ D+ Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL +H D+E FL +K D++ R ++ +PD F + N Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP V + + +I E Y+ I+ RKI A L ++ + E+G Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605 +P+I D N +P G + SNLC+EI +N E + CNLGS Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661 N++ N + ++R R L V D + TI+ + +HT IGLG M Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 G + H+ Y S E+++ D +++ + S ++A+ER + +F+ S + G Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526 Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + I G D++ + + ++P W L+ VK G+ + N +A+AP +I+ Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I S SI P + +++R E I + Y + N Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882 + IP + +A+++D +I+ + Q+ +DQ SL L++ + P G Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676 Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|146329736|ref|YP_001209517.1| ribonucleotide-diphosphate reductase subunit alpha [Dichelobacter nodosus VCS1703A] gi|146233206|gb|ABQ14184.1| ribonucleotide reductase, alpha subunit [Dichelobacter nodosus VCS1703A] Length = 573 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 160/579 (27%), Positives = 256/579 (44%), Gaps = 108/579 (18%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F++ L+ ++ S+P N G SCF + + D +Y I E M++K GG Sbjct: 75 FFHYLARGYYSFSSPIWSNFGLARGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIGGGTS 134 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G+ I NGKS G F K+ + ++QG RKG Y++ H D+EE Sbjct: 135 AYFGAIRPRGSDIR-DNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIEE 193 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 +L D++T L V + W Sbjct: 194 WL--------------DIHTEGNPIQLMYYGVCISHQWLA-------------------- 219 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578 E +A E + +W K+L ETG P++ FKD N P + + Sbjct: 220 ----EMKAGDSEKR--------RIWAKVLQRKSETGIPYLFFKDNANAGRPDVYKDLNLP 267 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-- 636 +++SNLCTEI L +S EE+ VC L S+NLL ++ K + V LD V+ Sbjct: 268 IYASNLCTEIMLPASEEESFVCCLSSMNLL------YYEEWKNTDAVELLVYFLDAVMTE 321 Query: 637 ----DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +E+A++ HRA+GLG++G+ S L H+P+ S A++ +E + + Sbjct: 322 FIEKSADLPFLERARRFAMRHRALGLGVLGWHSYLQSQHLPFDSLAAMQKNNEIFQLLQR 381 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 +SAS LA+ G +G Sbjct: 382 KTLSASRTLAEHLGEPEILRG--------------------------------------- 402 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ M++APT + + I G VS S++P N +VK T N FLV L Sbjct: 403 ---YGRRNTTLMSVAPTKSSSFILGSVSPSVEPLKSNYHVKDLAKIKTTYKNPFLVALLA 459 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L E + +DGS+ ++ + D+ K I T EI+ + +I+ A++RQK+IDQ Q Sbjct: 460 EKGLDTETTWESILLNDGSVQHLPDLSDEEKAIFKTFSEINQLSIIQQAAQRQKYIDQGQ 519 Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 S+NL + D P+ + ++ +Y A +G+K+ YY S SA Sbjct: 520 SINLMIHPDTPT-RDINQLYLTAAELGVKSIYYQHSMSA 557 >gi|225854652|ref|YP_002736164.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae JJA] gi|225723895|gb|ACO19748.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae JJA] Length = 719 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E A++ N + + +TP+ N+G R +L SCFL V DD+ I ++ L+ Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + +N LFSP V + + Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVP 315 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 +I E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 316 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 373 Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622 G + SNLC+EI +N + E CNLGS N++ + F Sbjct: 374 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 426 Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +IR VR L V D + TI+ HT GLG MG S L I Y SPE Sbjct: 427 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPE 483 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL 736 +VE +++ + S +A+ERG + +F+ S + G F G D + Sbjct: 484 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRV 543 Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + +P W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 544 KELFKNVFIPGVADWTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-- 601 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 E +Q E I + Y + + E IP + +A+++ Sbjct: 602 -----------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDM 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGL 897 D +I+ + + +DQ SL L++ D P G + L + A+ G+ Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGI 693 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 694 KSIYYVRT 701 >gi|289746859|ref|ZP_06506237.1| ribonucleoside-diphosphate reductase alpha subunit nrdE [Mycobacterium tuberculosis 02_1987] gi|289687387|gb|EFD54875.1| ribonucleoside-diphosphate reductase alpha subunit nrdE [Mycobacterium tuberculosis 02_1987] Length = 783 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340 D Y + F F +LG Y Y L +G R +E + + VA+ LA +T + V Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F +TPT NSG + + SCFL V D++ I ++ L+K GG Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + T +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518 FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334 Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I+ E Y D I+ KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391 Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI S+ + CNLGS+N+ D A TI Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + +L + Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 R+P W LK+ V+ G+ N N A+ PT +I+ I + SI P Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615 >gi|163786627|ref|ZP_02181075.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Flavobacteriales bacterium ALC-1] gi|159878487|gb|EDP72543.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Flavobacteriales bacterium ALC-1] Length = 599 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 162/597 (27%), Positives = 256/597 (42%), Gaps = 126/597 (21%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A +FY ++ ++ ++P N G + SCF + + DD+ I E M++K G Sbjct: 87 ADKFYGYMAEGYYSLASPVWSNFGKKRGLPISCFGSHISDDMGDILYTQSEVGMMSKLGG 146 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G + +R GA + NG+S G + +++ V+QG R+G YL H D Sbjct: 147 GTSGYFGKLRHRGAPVK-NNGESSGAVHIMQLFEKMVDVVSQGSVRRGRFSPYLPIEHND 205 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 + EFL++ + TH + N W+ ++ Sbjct: 206 INEFLEIGTEGNPIQELTHGVTVGNEWMQEM----------------------------- 236 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQ 574 I + +R A+W K+L E G+P+I FKD N +P Q+ Sbjct: 237 --IDGDTEKR----------------AIWAKVLQRRGEIGYPYIFFKDNANNTAPEVYQE 278 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632 + +++SNLC+EI L ++ + VC L SINLL YDK T + T V L Sbjct: 279 NKHEIYASNLCSEIMLPTNDRWSFVCVLSSINLL--------HYDKWKDTDAVETMVYFL 330 Query: 633 DNVID------------------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D V++ +EKA +RA+G+G +G+ S L +P+ Sbjct: 331 DAVLEEFVTKLEVYRDSPDRDDRQTFMFMEKAYNFAKENRALGMGALGWHSLLQSKMLPF 390 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + E + I ++ AS ELA++ G KG Sbjct: 391 DSAEAFNLNSEIFKTIKEKSVKASEELAEKFGEPEVMKG--------------------- 429 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 G RN+ A+APT + A I G VSQ I+P + N YVK Sbjct: 430 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNSYVKD 468 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 T+ N FL LK++ + + ++ +DGS+ ++E + + K + T EID Sbjct: 469 IAKIKTTIKNPFLKALLKEKGMDTVEIWKSIRDYDGSVQHLEGLTELEKDVFKTYSEIDQ 528 Query: 854 MWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 M +I A+ RQ IDQ QSLN+ + D P K ++ +Y AW +G+K+ YY S +A Sbjct: 529 MTIIYQAANRQNHIDQGQSLNIMVHPDMPV-KDINKLYVTAWQLGVKSLYYQHSMNA 584 >gi|312867246|ref|ZP_07727456.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parasanguinis F0405] gi|311097375|gb|EFQ55609.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parasanguinis F0405] Length = 719 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 174/657 (26%), Positives = 291/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E + CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ K HT GLG MG S L I Y SPE++E Sbjct: 438 FVTDSSHIVAVPTIDHGNKLAHT---FGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFML 494 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F + G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|162417878|ref|YP_001604552.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis Angola] gi|162350850|gb|ABX84799.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis Angola] Length = 548 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 159/547 (29%), Positives = 239/547 (43%), Gaps = 57/547 (10%) Query: 189 MYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 ++DG++ L AL+ S+ LI E PNY +V AR L K+R++ Sbjct: 16 IFDGMTTCQLHEALVKSAADLISPETPNYLQVAARLNLFKIRKDAFG------------- 62 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYD 303 Q YP ++ +I V + E ++ + ++ L +K +RD F Y L Sbjct: 63 -QYDYPNFY-NHIVSNVSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLAS 120 Query: 304 RYFLH--INGSRIEMPQAFFMRVAM--------GLALKETEKEKRAVEFYNLLSSFHFMC 353 +Y + + G+ E PQ +M V M G A K + R FY++ S+F Sbjct: 121 KYLVQNRVTGAIYEGPQQLYMLVGMCLFQNWEDGCAGKTRLEMVRG--FYDVTSTFKLSL 178 Query: 354 STPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 TP + +G R P Q SSC L D L GI A G+G + +R LG Sbjct: 179 PTPIM--AGVRTPTRQFSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALG 236 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I GVIPFLK + +QGG R GA A+ WH++VE L L+ N G Sbjct: 237 SEIRNGEATHTGVIPFLKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGI 296 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQ 528 + R ++ I L +R+ N TLFSP +V L+D + +FE Y YE Sbjct: 297 EENRVRHLDYGVMINRLMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYE-- 354 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTE 587 AD K + I AV L+ ++ TG +I D N + VH SNLC E Sbjct: 355 ADESIRK--KSIPAVDLFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCME 412 Query: 588 ITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 ITL + + E A+C L + NL A D L AV LD+++D Sbjct: 413 ITLPTKPLAFTDDPNGEIALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQ 467 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + A+ R++G+G+ F L Y+ ++ E+ E I ++ + AS Sbjct: 468 DYPMAAAEIPAKARRSLGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASC 527 Query: 700 ELAQERG 706 LA+E+ Sbjct: 528 RLAEEKA 534 >gi|322515074|ref|ZP_08068082.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] gi|322118954|gb|EFX91131.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] Length = 554 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 162/592 (27%), Positives = 263/592 (44%), Gaps = 116/592 (19%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D++E+LD+ + + + +W+ + AG Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + Y+RQ LW K+L ETG P++ FKD N P Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + VH+SNLCTEI L SS++E+ VC L S+NLL +D+ T A V Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSNDESFVCCLSSMNLLY--------FDEWKDT--EAPEV 291 Query: 632 LDNVIDI----------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 L +D+ + +++A + HRA+GLG++G+ S L +I + S +A++ Sbjct: 292 LTYFLDVVMSEFIEKSKDMPFLDRAHRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQ 351 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + + + AS ELA+ G KG Sbjct: 352 KNNLIFKTLQEKTLKASQELAKRFGEPEILKG---------------------------- 383 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800 G RN+ M+IAPT + + I G VS S++P N YVK Sbjct: 384 --------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTV 429 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 N FL L+++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A Sbjct: 430 YKNPFLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQA 489 Query: 861 SRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 ++RQK+IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 490 AQRQKYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|226940518|ref|YP_002795592.1| NrdE [Laribacter hongkongensis HLHK9] gi|226715444|gb|ACO74582.1| NrdE [Laribacter hongkongensis HLHK9] Length = 947 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 172/629 (27%), Positives = 273/629 (43%), Gaps = 80/629 (12%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL- 380 RVA LA +E E + A FY + F+ +GT L +CF+ V D + Sbjct: 37 RVAAALAGQEQEPSRHAESFYWAMEQ-GFIPGGRINSAAGTELSATLINCFVQPVGDSVS 95 Query: 381 ------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 GI+ AL + A + GG+G ++T +R GA + GTN ++ G + +++V + + Sbjct: 96 ETRDGKVGIYEALLQAAETMRRGGGVGYNFTRIRPKGARVKGTNSRASGPVSYMRVFDRS 155 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G R+GA L+ H D+E F+ K+ GD R + N + + D FM+ V Sbjct: 156 CETVESAGARRGAQMGVLDCDHPDIESFIHA-KDAGDLR----NFNISVGVSDAFMQAVE 210 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + W L +E KEF A + + + V+R + A LW +++ + Sbjct: 211 ADGSWELVHKEEPDR------KEFPDACQRADGKW------VYRAVRARDLWNQIMESTY 258 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611 + P + F N + + V+ S+N C E L + C+LGSINL Sbjct: 259 DHAEPGVLFMSKINRDNNLSYCEVIESTNPCGEQPL----PDYGCCDLGSINLTRFVRDP 314 Query: 612 --ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 A FD+ +R +VR+LDNV+D+ + + ++ + R IGLG G AL + Sbjct: 315 FTAKAGFDFATFDKVVRQSVRMLDNVLDLTVWPLPEQQREAQSKRRIGLGFTGLGDALIM 374 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L I Y+S A E + A ASV+LA E+GA+ F D+ L Sbjct: 375 LTIKYSSDAGRAFAARVSEAMRNSAYDASVDLAIEKGAFPLF------------DADQYL 422 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQ 787 AE + SRLP E+K R+K G+RNS+ ++IAPT TI A S I+P + Sbjct: 423 AEP------HCASRLP-KEIKARIKKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIH 845 Y + D T E + D Y + G++ +PD Sbjct: 476 WFYTRKKRMADGTQ---------------QEYRVEDHAYRVYRELGGDVSSLPD----YF 516 Query: 846 ATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 +A E+ + + + +ID A +++N+ D P + +Y +AW GLK Sbjct: 517 VSALEMSALDHMSMVAAVAPFIDTAISKTVNVPADYPFA-DFESLYIEAWRAGLKGITTY 575 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 R S S + + P DP+ Sbjct: 576 RPNSVLGSVLSVEPTRETPADLPPSDDPD 604 >gi|15901044|ref|NP_345648.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae TIGR4] gi|15903109|ref|NP_358659.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae R6] gi|111657124|ref|ZP_01407909.1| hypothetical protein SpneT_02001650 [Streptococcus pneumoniae TIGR4] gi|116516073|ref|YP_816516.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae D39] gi|148985788|ref|ZP_01818916.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|148990436|ref|ZP_01821594.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|148994531|ref|ZP_01823711.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|148999043|ref|ZP_01826475.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|149004131|ref|ZP_01828934.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS69] gi|149008158|ref|ZP_01831677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP18-BS74] gi|149013340|ref|ZP_01834071.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP19-BS75] gi|149026428|ref|ZP_01836565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|168483242|ref|ZP_02708194.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1873-00] gi|168486505|ref|ZP_02711013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1087-00] gi|168489009|ref|ZP_02713208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP195] gi|168577271|ref|ZP_02723065.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae MLV-016] gi|221231889|ref|YP_002511041.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae ATCC 700669] gi|225856855|ref|YP_002738366.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae P1031] gi|225858967|ref|YP_002740477.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae 70585] gi|225860978|ref|YP_002742487.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae Taiwan19F-14] gi|237649544|ref|ZP_04523796.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae CCRI 1974] gi|237822454|ref|ZP_04598299.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae CCRI 1974M2] gi|298229750|ref|ZP_06963431.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255395|ref|ZP_06978981.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502820|ref|YP_003724760.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae TCH8431/19A] gi|307067833|ref|YP_003876799.1| ribonucleotide reductase subunit alpha [Streptococcus pneumoniae AP200] gi|307127226|ref|YP_003879257.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus pneumoniae 670-6B] gi|14972660|gb|AAK75288.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus pneumoniae TIGR4] gi|15458688|gb|AAK99869.1| Ribonucleoside-diphosphate reductase (major subunit) [Streptococcus pneumoniae R6] gi|116076649|gb|ABJ54369.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae D39] gi|147755113|gb|EDK62168.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|147757864|gb|EDK64874.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS69] gi|147760397|gb|EDK67376.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP18-BS74] gi|147762930|gb|EDK69877.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP19-BS75] gi|147922092|gb|EDK73215.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147924288|gb|EDK75382.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147927201|gb|EDK78237.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|147929259|gb|EDK80260.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|172043335|gb|EDT51381.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1873-00] gi|183570440|gb|EDT90968.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1087-00] gi|183572571|gb|EDT93099.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP195] gi|183577174|gb|EDT97702.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae MLV-016] gi|220674349|emb|CAR68895.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae ATCC 700669] gi|225721006|gb|ACO16860.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae 70585] gi|225725183|gb|ACO21035.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae P1031] gi|225727917|gb|ACO23768.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238415|gb|ADI69546.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae TCH8431/19A] gi|301794278|emb|CBW36699.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae INV104] gi|301800115|emb|CBW32716.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae OXC141] gi|306409370|gb|ADM84797.1| Ribonucleotide reductase, alpha subunit [Streptococcus pneumoniae AP200] gi|306484288|gb|ADM91157.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae 670-6B] gi|327389422|gb|EGE87767.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA04375] gi|332073522|gb|EGI84001.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA17570] gi|332074794|gb|EGI85266.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA41301] gi|332075111|gb|EGI85582.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA17545] gi|332200631|gb|EGJ14703.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA41317] gi|332201650|gb|EGJ15720.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA47368] gi|332203033|gb|EGJ17101.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA47901] Length = 719 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E A++ N + + +TP+ N+G R +L SCFL V DD+ I ++ L+ Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + +N LFSP V + + Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVP 315 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 +I E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 316 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 373 Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622 G + SNLC+EI +N + E CNLGS N++ + F Sbjct: 374 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 426 Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +IR VR L V D + TI+ HT GLG MG S L I Y SPE Sbjct: 427 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPE 483 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL 736 +VE +++ + S +A+ERG + +F+ S + G F G D + Sbjct: 484 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRV 543 Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + +P W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 544 KELFKNVFIPGVADWAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-- 601 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 E +Q E I + Y + + E IP + +A+++ Sbjct: 602 -----------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDM 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGL 897 D +I+ + + +DQ SL L++ D P G + L + A+ G+ Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGI 693 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 694 KSIYYVRT 701 >gi|270307517|ref|YP_003329575.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] gi|270153409|gb|ACZ61247.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] Length = 585 Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 166/626 (26%), Positives = 269/626 (42%), Gaps = 87/626 (13%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHFM 352 +L RY +G+ E + F RVA +A E + A EFY +++ F F+ Sbjct: 10 VLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYCMMTGFEFL 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G LSSCF+ V D + GI + E ++ +Y GG G + +R Sbjct: 70 PNSPTLLNAGRELGLLSSCFVLPVADSVEGISKTIGEAMVIHQYGGGTGFAFDAIRPEDD 129 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + + + G + + V ++ A + Q G R G A L H D+ +F+ + D+ Sbjct: 130 PVKSGHTVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DE 185 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + + + D F+++V A + L +P R Sbjct: 186 GNHSANFGINIALTDSFIQKVRLGADYELVNP----------------------RTG--- 220 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +V +SA ++ ++ +ETG P I F D N +P +G +++ C L Sbjct: 221 --RVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLLP 278 Query: 593 SSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 T LG+INL + DY +L I AVR LD+V+++N + + +K Sbjct: 279 YESAT----LGTINLSGMLLKEGNCCRVDYPRLGGLITKAVRFLDDVLEVNRYPTAEVEK 334 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 + R IGLG MGF L L I Y S +AV ADE M F+ A A+ ELA ERGA+ Sbjct: 335 AAKATRKIGLGFMGFAEMLIKLGIRYDSADAVSAADELMAFVKEAACQATEELALERGAF 394 Query: 709 SSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 +F GS++ +G P RN+ C+ Sbjct: 395 PAFAGSIYAKRGAKP-----------------------------------RRNATCLTFT 419 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826 T T + I S I P Y + V++ + G + +N ++R + A+I L Sbjct: 420 NTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIEKLLT 479 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKK 884 + S N IP+D +++ TA +I P W I + QK+ D A Q++N + S + Sbjct: 480 GE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVN-FPANASVED 537 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910 + ++ +A +GLK R S S Sbjct: 538 IADLFLKAHELGLKGVTAYRDSSRES 563 >gi|194398211|ref|YP_002037787.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae G54] gi|194357878|gb|ACF56326.1| ribonucleoside-diphosphate reductase, alpha subunitv [Streptococcus pneumoniae G54] Length = 719 Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 166/608 (27%), Positives = 269/608 (44%), Gaps = 80/608 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E A++ N + + +TP+ N+G R +L SCFL V DD+ I ++ L+ Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + +N LFSP V + + Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVP 315 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 +I E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 316 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 373 Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622 G + SNLC+EI +N + E CNLGS N++ + F Sbjct: 374 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 426 Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +IR VR L V D + TI+ HT GLG MG S L I Y SPE Sbjct: 427 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPE 483 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL 736 +VE +++ + S +A+ERG + +F+ S + G F G D + Sbjct: 484 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRV 543 Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + +P W EL+ +V+ G+ + N +A+AP +I I VS SI P Q + Sbjct: 544 KELFKNVFIPGVADWAELRDKVQEDGLYHQNRLAVAPNGSIXYINDVSASIHPITQRI-- 601 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 E +Q E I + Y + + E IP + +A+++ Sbjct: 602 -----------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDM 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGL 897 D +I+ + + +DQ SL L++ D P G + L + A+ G+ Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGI 693 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 694 KSIYYVRT 701 >gi|307706627|ref|ZP_07643434.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK321] gi|307618082|gb|EFN97242.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK321] Length = 719 Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 174/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G + I G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYITGEFVPKSDRVKELFKDVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|55821275|ref|YP_139717.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus thermophilus LMG 18311] gi|55823188|ref|YP_141629.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus thermophilus CNRZ1066] gi|116628013|ref|YP_820632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus thermophilus LMD-9] gi|55737260|gb|AAV60902.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus LMG 18311] gi|55739173|gb|AAV62814.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus CNRZ1066] gi|116101290|gb|ABJ66436.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Streptococcus thermophilus LMD-9] gi|312278605|gb|ADQ63262.1| Ribonucleoside-diphosphate reductase [Streptococcus thermophilus ND03] Length = 719 Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 174/656 (26%), Positives = 287/656 (43%), Gaps = 82/656 (12%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 + F F+ ++ Y +Y L N + ++F RV E A + N + Sbjct: 89 QKFRFQSFMAAYKFYQQYALKTNDGETYL-ESFEDRVLFNALYFADGDENLASDLANEMI 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYE 523 K D++ R ++ +PD F + N LFSP + YGK + +I Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSP---YSIEKEYGKPYNYIDITAM 324 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 E A+ K KI+A L ++ + E+G+P+I D N +P G + SN Sbjct: 325 YDELVANPNITKT--KINARELETEISKLQQESGYPYIINIDTANRHNPID--GKIVMSN 380 Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI LN S E + CNLGS N+L + F +I+T R Sbjct: 381 LCSEILQVQTPSELNDSQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRA 435 Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + K N GLG MG S L HI Y SPE++E + + Sbjct: 436 LTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESIEFTNIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP-- 745 ++ + S +A+ER + F+ S + D F G D + + +P Sbjct: 496 NYWTLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRVKELFEGHFIPQA 555 Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + Sbjct: 556 KDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------- 601 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 E +Q E I + Y + + + IP + +A+++D +I+ + Sbjct: 602 -----EERQ-----EKKIGKIYYPANGL-STDTIP-----FYTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKLTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|293556437|ref|ZP_06675015.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] gi|291601401|gb|EFF31675.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] Length = 625 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 161/605 (26%), Positives = 273/605 (45%), Gaps = 92/605 (15%) Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L S + +TPT N+G R ++ SCFL + D + I L L++ GG+G + Sbjct: 50 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDIDDSMLSIGRNLNSALQLSRIGGGVGVNL 109 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R +GA I S GV+P +K+ D+ NQ G+R GA YL +H D+ FL Sbjct: 110 SNLRAMGAPIKEIANASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILNFLS 169 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD + + + N LF+P V +YG F +Y + Sbjct: 170 TKKENADEKIRVKTLSLGLIVPDKYYELLKTNQPMYLFNPYHV---ERVYGIPF--SYVD 224 Query: 525 YERQADRGEIK-VFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 ++ D + K I+A L +++ + E+G+P+I D N +P + G + Sbjct: 225 LTKEYDNMVVNDTIEKTVINARELEQEISRLQQESGYPYIINIDTANRTNPVK--GKIIM 282 Query: 582 SNLCTEIT-----------LNSSSEETAV-CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI LN T + CNLGS+N++ ++ F +I AV Sbjct: 283 SNLCSEILQPQEPSKLNADLNYKQVGTDISCNLGSMNMVNLMKSSDF-----GKSIEYAV 337 Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D ++ + K N + IGLG MG +AL L + Y S EA+E D Sbjct: 338 RALTTVTDQVHIEEVPTVSKGNALYHTIGLGAMGLHTALALNGLDYESEEALEFVDAFFL 397 Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGV-----------FPIDSIGLLAEVRDEL 736 ++++ + AS ++A E+ A+ F+ S + G F D + E+ ++ Sbjct: 398 AMNYYTLKASHQIAVEKSEAFHDFESSHYADGTYFDKYLEKDFEFQFDKVN---EIFKQI 454 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++ S W +LK+ + G+ + N +AIAP +I+ I S S+ P Q + Sbjct: 455 SLPTVS--DWQQLKEDIMHDGLYHRNRLAIAPNGSISYINETSASLHPITQLI------- 505 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 E +Q E + + Y + N + + TA+ +D + Sbjct: 506 ------------ENRQ-----EKKVGSIFYPAPYLSN------KTLRYYKTAYNMDQRKI 542 Query: 857 IESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTT 900 I+ ++ Q+ IDQ SL L++ P G + L+ + AW G+K+ Sbjct: 543 IDIYAKAQQHIDQGMSLTLFMRSVLPEGVYEWKSPGNSQLTTRDLNRLRNYAWTKGIKSL 602 Query: 901 YYLRS 905 YY+R+ Sbjct: 603 YYVRT 607 >gi|296876815|ref|ZP_06900863.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis ATCC 15912] gi|296432317|gb|EFH18116.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis ATCC 15912] Length = 719 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 174/657 (26%), Positives = 291/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E + CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ K H+ GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNKLAHS---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F + G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|309800431|ref|ZP_07694592.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus infantis SK1302] gi|308115947|gb|EFO53462.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus infantis SK1302] Length = 719 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 174/664 (26%), Positives = 291/664 (43%), Gaps = 96/664 (14%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSKAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--- 745 +++ + S +A+ERG + +F+ S + G + + DE + ++ R+ Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGSY------FDKYLTDEF-LPKSDRVKELF 547 Query: 746 ----------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 548 KDIFIPTAADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------ 601 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 E +Q E I + Y + + E IP + +A+++D Sbjct: 602 -------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRK 637 Query: 856 LIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTY 901 +I+ + + +DQ SL L++ D P+G + L + A+ G+K+ Y Sbjct: 638 VIDVYAAATEHVDQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIY 697 Query: 902 YLRS 905 Y+R+ Sbjct: 698 YVRT 701 >gi|322372697|ref|ZP_08047233.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C150] gi|321277739|gb|EFX54808.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C150] Length = 719 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 173/658 (26%), Positives = 288/658 (43%), Gaps = 82/658 (12%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y ++F F+ ++ Y +Y L N + + ++ RV E A + N Sbjct: 87 YSQNFRFQSFMSAYKFYQQYALKTNDGQAYL-ESIEDRVLFNALYFADGDEHLASDLANE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 206 SNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDILAFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521 +K D++ R ++ +PD F + +N LFSP V YGK F +I Sbjct: 266 TKKENADEKVRVKTLSLGVTVPDKFYELARKNEEMYLFSPYSV---EKEYGKPFNYIDIT 322 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E A+ K KI+A L ++ + E+G+P+I D N +P G + Sbjct: 323 AMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRHNPID--GKIVM 378 Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI LN + E + CNLGS N+L + F +I+ Sbjct: 379 SNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKAMT 433 Query: 630 RVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D + + K N GLG MG S L HI Y SPE+VE + Sbjct: 434 RALTFVTDSSSIEAVPSIKNGNQQAHTFGLGAMGLHSYLAKNHIEYGSPESVEFTNIYFM 493 Query: 689 FISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP 745 +++ + S +A+ER + F+ S + D F G D + + +P Sbjct: 494 LMNYWTLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRVKELFDGHFIP 553 Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W+EL++ VK G+ + N +A+AP +I+ I S SI P Sbjct: 554 QAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHP----------------- 596 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 + +++R E I + Y + + + IP + +A+++D +I+ + Sbjct: 597 ----ITQRIEER---QEKKIGKIYYPANGL-STDTIP-----FYTSAYDMDMRKVIDVYA 643 Query: 862 RRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 644 AATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|257865183|ref|ZP_05644836.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257871508|ref|ZP_05651161.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257874805|ref|ZP_05654458.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|257799117|gb|EEV28169.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257805672|gb|EEV34494.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257808971|gb|EEV37791.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] Length = 719 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFTFKSFMAAYKFYSQYALKTNDGTAYL-ERYEDRVAFNALYFADGNEELAMSLADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL + DD+ I + L++ GG+G + Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKEYGVPFSYVDITKE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DNLVMNPRIRK-TKIRARDLENEISKLQQESGYPYIINIDTANRSNPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N D ++R R L Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + +I+ NHT IGLG MG + + Y SPE++E D Sbjct: 438 FVTDASDIDVVPSIQNGNALNHT---IGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+E+G + +F+ S + G + D I + + E A+ LP Sbjct: 495 LNYWTLVESNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L + VK G+ + N +A+AP +I+ I S SI P Sbjct: 555 GEDWAALAQTVKETGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E I + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETI-----GYYKSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 QK +DQ S+ L++ D P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQKHVDQGMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|56478191|ref|YP_159780.1| ribonucleotide reductase, coenzyme B12-dependent [Aromatoleum aromaticum EbN1] gi|56314234|emb|CAI08879.1| Ribonucleotide reductase, Coenzyme B12-dependent [Aromatoleum aromaticum EbN1] Length = 963 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 183/644 (28%), Positives = 281/644 (43%), Gaps = 78/644 (12%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379 RVA LA+ E E +KRA L + F+ + +GT L +CF+ V D Sbjct: 46 RVARALAIVEAE-DKRAHWEAKFLEAQEKGFVPAGRINSAAGTNLQATLINCFVQPVGDS 104 Query: 380 LY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + GI+ AL + A + GG+G D++ +R GA + GT + G + +++V + Sbjct: 105 VTEAVDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGALVRGTLSNASGPVSYMRVFD 164 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA L H DVEEF+ K+ GD + N + + D FMK Sbjct: 165 RSCETVESAGARRGAQMGVLRCDHPDVEEFIHA-KDHGD----LTNFNISVGVSDAFMKA 219 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +A +V H E A Y+R D G + V+RK+ A LW +++ Sbjct: 220 VDTDA--------DVELAHKAEPIEELKAAGAYQR--DDG-LWVYRKLPARELWDQIMRS 268 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++ P I F D N + + + ++N C E L C+LGSINL Sbjct: 269 TYDHAEPGILFLDRMNQDNNLHYCETIEATNPCAEQPL----PPYGCCDLGSINLTPFIK 324 Query: 613 NN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + +FDY + A+R+LDNV+D+ + + + + R +GLG G AL Sbjct: 325 HPFTDKAEFDYPAFGKVVDVAIRMLDNVLDVTHWPLPQQENEAQSKRRVGLGFTGLGDAL 384 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L Y SP+A +A + E++ A ASVELA+ERGA+ F L+ G Sbjct: 385 IMLCKRYDSPDARAVATKISEYMRDRAYLASVELAKERGAFPLFNADLYLSG-------- 436 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785 N SRLP D LK +++ G+RNS+ ++IAPT TI A S I+P Sbjct: 437 ----------GNFASRLPAD-LKDKIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPP 485 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + D T + V + R L H G GN+ D+L Sbjct: 486 FSYTYTRRKRMADGT-YKEYPVEDYAWR----------LFKHLG--GNV----DELPPYF 528 Query: 846 ATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 TA EI + + ++D ++++N+ D P + D +Y AW GLK Sbjct: 529 VTALEISAQAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFED-LYLSAWKAGLKGLATY 587 Query: 904 RSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 R S SV T + + + PN +P+ S Sbjct: 588 RPNSVLGSVLSVTPSAAPKQPQDIEFSGPNKRLAIKSLPAPVLS 631 >gi|307709352|ref|ZP_07645810.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK564] gi|307619935|gb|EFN99053.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK564] Length = 719 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 174/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELRDKVQVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|307708707|ref|ZP_07645170.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis NCTC 12261] gi|307615281|gb|EFN94491.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis NCTC 12261] Length = 719 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 174/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELREQVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|325571549|ref|ZP_08147049.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus casseliflavus ATCC 12755] gi|325156025|gb|EGC68221.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus casseliflavus ATCC 12755] Length = 719 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFTFKSFMAAYKFYSQYALKTNDGTAYL-ERYEDRVAFNALYFADGNEELAMSLADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL + DD+ I + L++ GG+G + Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKEYGVPFSYVDITKE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DNLVMNPRIRK-TKIRARDLENEISKLQQESGYPYIINIDTANRSNPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N D ++R R L Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + +I+ NHT IGLG MG + + Y SPE++E D Sbjct: 438 FVTDASDIDVVPSIQNGNALNHT---IGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+E+G + +F+ S + G + D I + + E A+ LP Sbjct: 495 LNYWTLVESNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L + VK G+ + N +A+AP +I+ I S SI P Sbjct: 555 GEDWAALAQTVKETGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E I + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETI-----GYYKSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 QK +DQ S+ L++ D P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQKHVDQGMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|182684088|ref|YP_001835835.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus pneumoniae CGSP14] gi|303255567|ref|ZP_07341619.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS455] gi|303260587|ref|ZP_07346553.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP-BS293] gi|303262721|ref|ZP_07348660.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS292] gi|303265255|ref|ZP_07351166.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS397] gi|303267602|ref|ZP_07353444.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS457] gi|303269941|ref|ZP_07355679.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS458] gi|182629422|gb|ACB90370.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus pneumoniae CGSP14] gi|301801955|emb|CBW34683.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae INV200] gi|302597473|gb|EFL64567.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS455] gi|302636153|gb|EFL66649.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS292] gi|302638300|gb|EFL68769.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP-BS293] gi|302640523|gb|EFL70932.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS458] gi|302642868|gb|EFL73173.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS457] gi|302645226|gb|EFL75462.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS397] Length = 719 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 168/610 (27%), Positives = 269/610 (44%), Gaps = 84/610 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E A++ N + + +TP+ N+G R +L SCFL V DD+ I ++ L+ Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + +N LFSP V Y Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSV---EKEY 312 Query: 515 GKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 G F E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 313 GAPFNYIDITEKYDELVVNPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANP 371 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDK 620 G + SNLC+EI +N + E CNLGS N++ + F Sbjct: 372 VD--GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF---- 425 Query: 621 LASTIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +IR VR L V D + TI+ HT GLG MG S L I Y S Sbjct: 426 -GRSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGS 481 Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRD 734 PE+VE +++ + S +A+ERG + +F+ S + G F G D Sbjct: 482 PESVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSD 541 Query: 735 ELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + + + +P W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 542 RVKELFKNVFIPGVADWAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI 601 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 E +Q E I + Y + + E IP + +A+ Sbjct: 602 -------------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAY 631 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLM 895 ++D +I+ + + +DQ SL L++ D P G + L + A+ Sbjct: 632 DMDMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNK 691 Query: 896 GLKTTYYLRS 905 G+K+ YY+R+ Sbjct: 692 GIKSIYYVRT 701 >gi|322391985|ref|ZP_08065449.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus peroris ATCC 700780] gi|321145211|gb|EFX40608.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus peroris ATCC 700780] Length = 719 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 173/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREGGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G + + G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGTYFDKYVTGEFVPKSDRIKELFKNVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELRDKVKVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + + IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPQGLYEWKSENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|329767979|ref|ZP_08259490.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] gi|328838464|gb|EGF88072.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] Length = 696 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 162/590 (27%), Positives = 273/590 (46%), Gaps = 73/590 (12%) Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG +R +L SCFL V D L I L+K GG+ + + +R G Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G ++GVIP K +Q G+R GA YL +H DV EFLD +K D+ Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R ++T +P LF +N + +F P + + + L + +IA E A+ Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDIAKYYDEFVANEN 327 Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 +K RK A R ML ++ +T G+P++ FKD N + +G V SNLCTEI Sbjct: 328 IMK--RKFDA----RDMLNLIAQTQLQSGYPYLMFKDNANKDHALREIGQVKMSNLCTEI 381 Query: 589 -------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + E+ + CNL S+N++ N + K+ +I + + L V Sbjct: 382 FQLQETSIIKDYGEDDIIKRDISCNLASLNIV-----NVMESKKIKESIYSGMDALTFVS 436 Query: 637 DINCHTIEKAK---KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 N I+ A K+N ++GLG M L I Y S EA + A+ ++++ Sbjct: 437 --NSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNYY 494 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPW 746 + S+++A++R + F+ S + G + D + + +V++ ++ +R W Sbjct: 495 TLERSMQIAKKRNETFKDFEKSDYYNGRYFTKYIENDYLPVTDKVKELFEGIHIPTREDW 554 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 LK RVK G+ ++ MAIAPT +I+ + + S+ P + Sbjct: 555 RSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLP---------------------I 593 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V+++++R + + Y + + + +AF ID M LI+ + Q+ Sbjct: 594 VDKIERRSYGNAETFYPMPY----------LSPKTQWFYKSAFTIDQMKLIDLMAVIQEH 643 Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 +DQ S+ L+++ + + ++L Y A GLK+ YY R++ SVE+ T Sbjct: 644 VDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692 >gi|325284718|ref|YP_004264181.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus proteolyticus MRP] gi|324316207|gb|ADY27321.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus proteolyticus MRP] Length = 695 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 165/611 (27%), Positives = 278/611 (45%), Gaps = 73/611 (11%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386 AL + + A+E + L + F +TPTL NSG + +L SCFL D+L I Sbjct: 119 ALARSSNVEEALELVHHLVNQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLNSITKT 178 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L A L+K GG+G + + +R G + G ++GV+ K+ ++ +Q G+R G Sbjct: 179 LSFVAELSKGGGGIGVEVSNLRARGESLRGIQNVTKGVMGVAKMLDNMLRYADQAGQRPG 238 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YL H D + L +K D+ R ++ IPD+FM++V F P Sbjct: 239 AGAIYLSVMHADFMDVLSAKKIASDEDSRLKTLSVGATIPDIFMQKVRSGEDIYQFYP-- 296 Query: 507 VSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + G+EF I + E Y+ AD I+ +++SA ++ + E+G+P++ F+ Sbjct: 297 -YSIEQETGREFTSIDWNEEYQALADNPRIRK-KRVSARRVFEDIAITQGESGYPYLLFE 354 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEE-------TAVCNLGSINLLAH 610 N +P +VG + SNLC+EI + EE CNL S+ + Sbjct: 355 GNANRANPIPNVGKILMSNLCSEILQPTRPSYFHPYGEEHKDRIGLDVSCNLSSLVI--- 411 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHL 669 + + A+R+LD+V T + K++N R+IGLG MG S L Sbjct: 412 --EQTMRSGDMGRVVGAAIRMLDDVARSTSVTEVPAVKRANDEMRSIGLGAMGLHSFLAK 469 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723 + Y S EA++ D + +HA AS+E+A++ G ++ F+GS + G + Sbjct: 470 NELIYGSEEALDFVDTFFAAVHYHARKASMEIARDTGFVFAGFEGSRYADGSYFEQYLAK 529 Query: 724 DSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D AEV A+ LP W +L + ++ G+ +S MAIAPT +I+ + S Sbjct: 530 DFTPKTAEV---AALFEGHTLPTKEDWAQLVRDIQQHGLAHSFVMAIAPTGSISYVSHAS 586 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + + +++ K R ++ + + Sbjct: 587 ASIMPITEKVETRTSN---------------KARTIYP----------------MPHLNV 615 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK 898 D + + A+++D ++++ + Q+ +DQ S L++ S + L Y QA+L G+K Sbjct: 616 DTEWYYEEAYDMDMNRVLDTVATAQRHVDQGISCTLFVPGTCSTRDLQRYYIQAYLKGVK 675 Query: 899 TTYYLRSRSAT 909 T YY R R T Sbjct: 676 TLYYTRMRKTT 686 >gi|222475860|ref|YP_002564381.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum lacusprofundi ATCC 49239] gi|222454231|gb|ACM58495.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum lacusprofundi ATCC 49239] Length = 562 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 163/593 (27%), Positives = 260/593 (43%), Gaps = 117/593 (19%) Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 ++E A FY+ +S + ++P N G SCF + + D++ I E + Sbjct: 55 DEEGFADRFYDYMSRGFYSLASPVWANFGLDSGLPISCFGSYMEDNMESILYTHAEVGEM 114 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 K GG + +R G+ I NGKS G F ++ + V+QG R+G Y++ Sbjct: 115 TKLGGGTSGYFGDIRPRGSPIT-NNGKSNGSYSFTELFDTAINVVSQGETRRGQFAGYID 173 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+EE+L++ K GD + D+F + Sbjct: 174 VEHDDLEEWLNI-KTEGDP------------VQDIFYGVI-------------------- 200 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 I E ++ D E K W K++ G P+I F+D N PQ Sbjct: 201 ------IGDEWFQEMVDGDEEKR-------ETWAKIIETRINIGVPYIIFRDNMNEGKPQ 247 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 + +++SNLCTEI L ++ +E+ VC L S+N L +D K + T R Sbjct: 248 VYKDKDYEINASNLCTEIALPATPDESFVCCLSSMNAL------HYDEWKDTDAVETLTR 301 Query: 631 VLDNVIDI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 LD V++ +E+A + HRA+G+G++G+ S L IP+ S EA++ + Sbjct: 302 FLDAVMEEFIQKAEGTQFMERAVRFAKRHRAVGIGVLGWHSYLQSNMIPFDSMEAMQENE 361 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + I + AS ELA E G +G Sbjct: 362 QIFRTIREKSYEASEELADEFGEPEMLEG------------------------------- 390 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803 G RN+ M++APT + + I G VS SI+P N +V+ T N Sbjct: 391 -----------YGRRNTTTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKN 439 Query: 804 SFLVNELKQR-----DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL LK+R ++WD + +DGS+ +++ + D+ K++ T EI M +I Sbjct: 440 RFLEAILKERGRDGREVWD-----SIAQNDGSVQHLDCLTDEEKEVFKTFAEIPQMAIIN 494 Query: 859 SASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 A++RQK IDQAQSLN+ +D E S K+++ +Y +AW G+K+ YY S +A Sbjct: 495 QAAQRQKHIDQAQSLNVSIDPSEVSVKEINQLYIEAWKKGVKSLYYQHSVNAA 547 >gi|322516574|ref|ZP_08069488.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus vestibularis ATCC 49124] gi|322124844|gb|EFX96268.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus vestibularis ATCC 49124] Length = 719 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E A + N + + +TP+ N+G +R +L SCFL V DD+ I ++ L+ Sbjct: 136 ENLASDLANEMIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLS 195 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ Sbjct: 196 RIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDV 255 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + N LFSP V Y Sbjct: 256 FHPDILAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSV---EKEY 312 Query: 515 GKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 GK + +I E A+ K KI+A L ++ + E+G+P+I D N + Sbjct: 313 GKPYNYIDITAMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRHN 370 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI LN + E + CNLGS N+L + F Sbjct: 371 PID--GKIVMSNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF--- 425 Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +I+ R L V D + + K N GLG MG S L HI Y SPE Sbjct: 426 --GRSIKAMTRALTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPE 483 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL 736 +VE + +++ + S +A+ER + F+ S + D F G D + Sbjct: 484 SVEFTNIYFMLMNYWTLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRI 543 Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + +P W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + Sbjct: 544 KELFEGHFIPQAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-- 601 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 E +Q E I + Y S+ + + IP + +A+++ Sbjct: 602 -----------------EERQ-----EKKIGKIYYPANSL-STDTIP-----FYTSAYDM 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897 D +I+ + + +DQ SL L+L ++ + + L + A+ G+ Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGI 693 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 694 KSIYYIRT 701 >gi|312862712|ref|ZP_07722952.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus vestibularis F0396] gi|311101572|gb|EFQ59775.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus vestibularis F0396] Length = 719 Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E A + N + + +TP+ N+G +R +L SCFL V DD+ I ++ L+ Sbjct: 136 ENLASDLANEMIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLS 195 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ Sbjct: 196 RIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDV 255 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + N LFSP V Y Sbjct: 256 FHPDILAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSV---EKEY 312 Query: 515 GKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 GK + +I E A+ K KI+A L ++ + E+G+P+I D N + Sbjct: 313 GKPYNYIDITAMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRYN 370 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI LN + E + CNLGS N+L + F Sbjct: 371 PID--GKIVMSNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF--- 425 Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +I+ R L V D + + K N GLG MG S L HI Y SPE Sbjct: 426 --GRSIKAMTRALTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPE 483 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL 736 +VE + +++ + S +A+ER + F+ S + D F G D + Sbjct: 484 SVEFTNIYFMLMNYWTLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRI 543 Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + +P W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + Sbjct: 544 KELFEGHFIPQAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-- 601 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 E +Q E I + Y S+ + + IP + +A+++ Sbjct: 602 -----------------EERQ-----EKKIGKIYYPANSL-STDTIP-----FYTSAYDM 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897 D +I+ + + +DQ SL L+L ++ + + L + A+ G+ Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGI 693 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 694 KSIYYIRT 701 >gi|254487728|ref|ZP_05100933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Roseobacter sp. GAI101] gi|214044597|gb|EEB85235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Roseobacter sp. GAI101] Length = 760 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 159/592 (26%), Positives = 255/592 (43%), Gaps = 90/592 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E E F+ L F F+ + SGT R L +CF + T+PD + Sbjct: 37 RIARDLAQTEDAPEVWEETFFEALEDFKFLPAGRITAGSGTARRVTLFNCFVMGTIPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVLGVSADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H DVE+F+ + D R N + I D FM V + W Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMSVLITDPFMDAVKADQSWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV+R + A LW +++ +E P Sbjct: 213 L-----------QFGG------------------KVYRTVQARDLWNRIMKATYEFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + F D N + + + ++N C E L C LGSIN+ A+ Sbjct: 244 VIFIDRINAANNLSYCETIAATNPCGEQPL----PPYGACLLGSINMARMVADPFDKTAH 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L + TAVR++DNV+D++ +E K R IGLG+ G AL ++ + Y Sbjct: 300 LDVVALDKLVATAVRMMDNVVDVSKFPLEAQKAEAKAKRRIGLGVTGLADALLMVGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + ++ I+ A ASV+LA+E+GA+ F + Sbjct: 360 SDEAAAQTEAWLKAIARAAYLASVDLAKEKGAFPLFDADAY------------------- 400 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 LA ++ ++++ +K G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 401 LASGTMQQMD-EDVRSEIKEHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459 Query: 795 MSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + D + +V+ Q RDL +A + D + ++ ++ + K+ A A Sbjct: 460 LQKDGSRTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLAPLDHV-----KMQAAA---- 510 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKW+D + S + E S +Y AW G K TTY Sbjct: 511 -----------QKWVDSSISKTINCPEDISFDAFKDVYMAAWDQGCKGCTTY 551 >gi|222831854|gb|EEE70331.1| predicted protein [Populus trichocarpa] Length = 280 Score = 185 bits (470), Expect = 3e-44, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 159/247 (64%), Gaps = 10/247 (4%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++I+RNG V SF+P+KI+ A+ KAF+AV G + S RV++I++ LT+ V L++ + Sbjct: 39 KLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRSRPN 98 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI--APKLKI 147 HIED+QD VE +LM+SG H++ R YVLYRE+R+ R AQ+++++ A + A Sbjct: 99 GGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQER-AQANAQAVARVQEAGVSFN 157 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + D+G + L +++ ACSGL + VS++ +L ET KN+YDG+ + + + I ++ Sbjct: 158 VTDNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAILAA 217 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 RTLIEK+P Y++VTAR LL +R+E+L + T EM Y EYF ++I G++A Sbjct: 218 RTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARGIEA 271 Query: 267 RLLHESM 273 LL E + Sbjct: 272 ELLDEKL 278 >gi|126733656|ref|ZP_01749403.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. CCS2] gi|126716522|gb|EBA13386.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. CCS2] Length = 760 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 167/611 (27%), Positives = 267/611 (43%), Gaps = 93/611 (15%) Query: 306 FLHINGSRIEMPQA-FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I+ A + R+A LA E + +FY+ L F ++ + +GT Sbjct: 19 FKEADGTPIDETVADTWTRIAGALAAVEDDPTAWESKFYDALEDFKYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVMGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H DVE+F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAKS----DPARLRMFNMS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 I D FM+ V + W L ++G E V+R + A Sbjct: 195 VLITDPFMEAVKADGPWDL-----------IFGGE------------------VYRTVQA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW ++ ++ P + F D N + + + ++N C E L C L Sbjct: 226 RELWDAIMRSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSIN+ A + F D L + TAVR++DNV+D + +E + R I Sbjct: 282 GSINM-ARLVKDPFEDIAALDEAALTDLVATAVRMMDNVVDASRFPLEAQQAEAKAKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL ++ + Y S EA D+ M I+ A ASV+LA+E+GA+ F Sbjct: 341 GLGVTGLADALLMVGLRYGSQEAAAQTDKWMHQIARAAYLASVDLAKEKGAFPLFDA--- 397 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 +Q + G+ A+VRD +A + G+RN+ +IAPT TI+ Sbjct: 398 EQFLASGAMQGMDADVRDAIAEH-----------------GIRNALLTSIAPTGTISLYA 440 Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN 833 G VS I+P + Y + + D + +V+ Q RDL +A + D + ++ Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQLWRDLKGDAPLPDYFVNAQTLAP 500 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892 ++ + ++ A A QKWID + S + E S +Y A Sbjct: 501 LDHV-----RMQAAA---------------QKWIDSSISKTINCPEDISFDDFKEVYMAA 540 Query: 893 WLMGLK--TTY 901 W G K TTY Sbjct: 541 WDQGCKGCTTY 551 >gi|168491100|ref|ZP_02715243.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC0288-04] gi|183574524|gb|EDT95052.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC0288-04] Length = 719 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPG 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 VADWAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKDLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|167856023|ref|ZP_02478768.1| ribonucleoside-diphosphate reductase large chain [Haemophilus parasuis 29755] gi|219871495|ref|YP_002475870.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis SH0165] gi|167852862|gb|EDS24131.1| ribonucleoside-diphosphate reductase large chain [Haemophilus parasuis 29755] gi|219691699|gb|ACL32922.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus parasuis SH0165] Length = 569 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 162/588 (27%), Positives = 255/588 (43%), Gaps = 108/588 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY + +F S+P N G SCF + + D ++ I E M++K Sbjct: 65 EGYADKFYYYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 124 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 125 IGGGTSAYFGDIRPRGSLIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 183 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D++E+LD+ + + + +W+ + AG Sbjct: 184 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 220 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + Y+RQ LW K+L ETG P++ FKD N P Sbjct: 221 --------DPYKRQ----------------LWAKILQRKTETGIPYLFFKDNANAGRPDV 256 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + VH+SNLCTEI L S++EE+ VC L S+NLL FD K Sbjct: 257 YKDKNMTVHASNLCTEIMLPSNNEESFVCCLSSMNLL------YFDEWKDTDAPEVLTYF 310 Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 LD V+ +++A + HRA+G+G++G+ S L +IP+ S EA++ + Sbjct: 311 LDVVMSEFIEKSAEIPFLDRANRFAKRHRALGIGVLGWHSYLQANNIPFDSFEAMQKNNI 370 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + + + AS ELAQ G KG Sbjct: 371 IFKTLKEKTMKASEELAQRFGEPELLKG-------------------------------- 398 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804 G RN+ M+IAPT + + I G VS S++P N YVK N Sbjct: 399 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 448 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 FL L+++ L E + + +DGS+ ++ ++ + K++ T EI + +I+ A++RQ Sbjct: 449 FLEQLLREKGLDTEEIWESILLNDGSVQHLTQLSEHEKEVFKTFSEISQLSVIQQAAQRQ 508 Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 K+IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 509 KYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 556 >gi|315641367|ref|ZP_07896442.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus italicus DSM 15952] gi|315482860|gb|EFU73381.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus italicus DSM 15952] Length = 719 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 168/654 (25%), Positives = 290/654 (44%), Gaps = 76/654 (11%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F F ++ Y +Y L N E +++ RVA E+ A+ + + Sbjct: 88 EQSFVFHSFMAAYKFYSQYALKTNNGE-EYLESYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL + DD+ I + L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNSIGRGINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGSPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIMTFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVLVPDKFYELTRKNEEMYLFSPYSVEREYGVPFSYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DELVTNPRIRK-TKIKARDLENELSKLQQESGYPYIINIDTANRANPVN--GKIIMSNLC 382 Query: 586 TEI------TLNSSSEETAV------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +L ++ +E V CNLGS N++ ++ F ++RT R L Sbjct: 383 SEILQVQEPSLINAKQEYDVLGTDISCNLGSTNIVNLMSSPDF-----GKSVRTMTRALT 437 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + + NH + IGLG MG + + Y SPE++E D +++ Sbjct: 438 FVTDASDIDVVPSIQNGNHLNHTIGLGAMGLHTYFAKNQMEYGSPESIEFTDIYFTLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA-MNRTSRLP 745 + S +A+ER + +F+ S + G + I A+V++ A + + Sbjct: 498 WTLVESNTIAKERQLVFHNFEKSSYADGSYFDKYIQGNHQPKSAKVKELFAGVFIPTSDD 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L VK G+ + N +A+AP +I+ I S S+ P Sbjct: 558 WQVLADNVKRDGLYHQNRLAVAPNGSISYINDTSASLHP--------------------- 596 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + +++R E I + Y + N E I + +A+++D +I+ + Q+ Sbjct: 597 ITRLIEER---QEKKIGKIYYPAAYLSN-ETI-----GYYKSAYDMDMRKVIDVYATAQQ 647 Query: 866 WIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 IDQ S+ L+L D P G + L+ + A+ G+K+ YY+R+ Sbjct: 648 HIDQGMSMTLFLRSDMPEGLYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|323341318|ref|ZP_08081562.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus ruminis ATCC 25644] gi|323091195|gb|EFZ33823.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus ruminis ATCC 25644] Length = 702 Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 157/592 (26%), Positives = 263/592 (44%), Gaps = 76/592 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TP+ N+G R + SCFL DD+ I + L++ GG+G + + +RG Sbjct: 132 FQPATPSFLNAGRKRRGEFVSCFLLQTTDDMNSIGRMINSALQLSRIGGGVGVNLSNLRG 191 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G + GV+P +K+ D+ NQ G+R+GA YL +H DV EFL +K Sbjct: 192 RGASIKQIKGVASGVVPVMKLLEDSFSYSNQLGQRQGAGAVYLNVFHPDVLEFLGTKKEN 251 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LF P V + ++ E YE+ Sbjct: 252 ADEKIRVKTLSLGLVVPDKFYELARKNEEMCLFEPYTVEKEYHCPFSYVDLTKE-YEKMV 310 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + I+ +KISA L ++ + E+G+P+I D N +P + G + SNLC+EI Sbjct: 311 ENPRIEK-KKISARMLEEEISKLQQESGYPYIVNIDTVNAGNPIK--GKIVMSNLCSEIL 367 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N E + CNLGS N+ N +++T V+ L V D Sbjct: 368 QVQEPSVINDEQEYVKLGRDISCNLGSTNIA-----NLMKAPDFGRSVKTMVKALTEVSD 422 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N ++ N T AIGLG MG S L I Y S EA+E +++ + Sbjct: 423 ESNIKSVPSVAHGNETAHAIGLGAMGLHSFLAQNKIRYGSKEALEFVSTYFMLLNYWTLV 482 Query: 697 ASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSRLPWDEL 749 AS E+A E+ + F S + G + DS ++ ++ + S W L Sbjct: 483 ASNEIAIEKKQMFDGFLESGYADGSYFEEYENADSTLHFSKTKELFKGIFIPSAKDWGRL 542 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++ V G+ N N +A+APT +I+ I + S+ P +V Sbjct: 543 RQNVMRHGLYNQNRLAVAPTGSISYINDTTASLQP---------------------IVRV 581 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +++R E I + Y + E +P + +A+++D +I++ + QK +DQ Sbjct: 582 VEER---QEKKIGKIYYPAPGLSE-ETLP-----YYTSAYDLDMRCVIDTYAAAQKHVDQ 632 Query: 870 AQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ +E + + L + A+ +K+ YY+R+ Sbjct: 633 GLSLTLFMRSKPSADLYEWKKGHKEELTTRDLTILRHYAFRKKIKSIYYVRT 684 >gi|329116333|ref|ZP_08245050.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parauberis NCFD 2020] gi|326906738|gb|EGE53652.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parauberis NCFD 2020] Length = 719 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 159/595 (26%), Positives = 266/595 (44%), Gaps = 84/595 (14%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + N LFSP V KE+ I Y + A Sbjct: 271 ADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYSVE-------KEYGIPYNYIDITA 323 Query: 530 DRGEI----KVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E+ K+ + KI A L ++ + E+G+P+I D N +P G V SNL Sbjct: 324 MYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPVD--GKVIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F ++I+ R L Sbjct: 382 CSEILQIQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GASIKAMTRAL 436 Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + K N GLG MG S L HI Y SPE+VE D ++ Sbjct: 437 TFVTDSSQIEAVPTIKNGNQQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP--- 745 + + S +A+ER ++ F+ S + D F G D + + + +P Sbjct: 497 YWTLVESNNIARERQTTFTGFENSKYADGSYFDKYVTGKFVPQTDFVKDLFKDHFIPQAS 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L++ V+ G+ + N +A+AP +I+ I S SI P Sbjct: 557 DWETLRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHP-------------------- 596 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + +++R E I + Y + + + IP + +A+++D +I+ + Sbjct: 597 -ITQRIEER---QEKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 647 QHVDQGLSLTLFLRSELPKELYEWKSESKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|331266448|ref|YP_004326078.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis Uo5] gi|326683120|emb|CBZ00738.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis Uo5] Length = 719 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 173/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + + IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|239636655|ref|ZP_04677657.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus warneri L37603] gi|239598010|gb|EEQ80505.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus warneri L37603] Length = 701 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 177/684 (25%), Positives = 293/684 (42%), Gaps = 92/684 (13%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMR 323 + E D DLV + +Y + F+ Y+ Y Y L N + +E Sbjct: 69 VFEKYSDSDLVEIT---EYAKSINFQFASYMSASKFYKDYALKTNDKQQYLEDYNQHVAI 125 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382 V+M LA + ++ K +F + + + +TPT N+G R +L SCFL V D L Sbjct: 126 VSMYLANGDKDQAK---QFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNS 182 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I L+K GG+ + + +R G I G G ++GV+P K +Q G Sbjct: 183 INFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLG 242 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R GA YL +H DVEEFLD +K D+ R ++T +P F + + +F Sbjct: 243 QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMF 302 Query: 503 SPDEVS----------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 +P V DL Y +A N E+ +K A + + Sbjct: 303 APHTVKQEYGVTLDDIDLEKYYDD--MVANPNVEK----------KKKDAREMLNTIAQT 350 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----C 600 ++G+P++ FKD N +G + SNLCTEI +N E + C Sbjct: 351 QLQSGYPYLMFKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISC 410 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659 NLGS+N++ N + K ++ T + L V D N KK+N ++GLG Sbjct: 411 NLGSLNIV-----NVMESQKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLG 465 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718 +M L I Y S EA + A+ +++++I S+++A+ERG Y F S + Sbjct: 466 VMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYYSIERSMQIAKERGEKYLDFDKSDYAN 525 Query: 719 GVF--PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATI 772 G + S + + + +P W L+K V+ G+ ++ +AIAPT +I Sbjct: 526 GKYFEFYTSQEFEPQFEKVRELFKGFEIPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSI 585 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P +V+++++R + + + Sbjct: 586 SYVQNATSSVMP---------------------IVDQIERRTYGNAETFYPMPF------ 618 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + + + +AF D M LI+ S Q +DQ S LY++ E S ++L +Y Sbjct: 619 ----LSPETMWYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVY 674 Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915 A GLK+ YY R++ SVE+ T Sbjct: 675 AHHKGLKSLYYTRNK-LLSVEECT 697 >gi|319947338|ref|ZP_08021571.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus australis ATCC 700641] gi|319746580|gb|EFV98840.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus australis ATCC 700641] Length = 719 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 173/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEDIAKDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E + CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F + G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYTTGEFVPQSDRVKELFKDIFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + + IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|241888655|ref|ZP_04775962.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella haemolysans ATCC 10379] gi|241864678|gb|EER69053.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella haemolysans ATCC 10379] Length = 696 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 165/593 (27%), Positives = 270/593 (45%), Gaps = 79/593 (13%) Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG +R +L SCFL V D L I L+K GG+ + + +R G Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G ++GVIP K +Q G+R GA YL +H DV EFLD +K D+ Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R ++T +P LF +N + +F P + + + L + +IA + Y+R Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDIA-KYYDRFVANE 326 Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I + RK A R ML ++ +T G+P++ FKD N + +G V SNLCTEI Sbjct: 327 NI-MKRKFDA----RDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEI 381 Query: 589 TLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +ET+V CNL S+N++ N + K+ +I + + L Sbjct: 382 F---QLQETSVIKDYGEDDIIKRDISCNLASLNIV-----NVMESKKIKESIYSGMDALT 433 Query: 634 NVIDINCHTIEKAK---KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V N I+ A K+N ++GLG M L I Y S EA + A+ + Sbjct: 434 FVS--NSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMM 491 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--GLLAEVRDELAMNRTSRLP-- 745 +++ + S+++A++R + F+ S + G + I L A+ +P Sbjct: 492 NYYTLERSMQIAKDRNETFKDFEKSDYYNGSYFTKYIENDYLPVTEKVKALFEGIYIPTK 551 Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W LK RVK G+ ++ MAIAPT +I+ + + S+ P Sbjct: 552 EDWRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLP------------------- 592 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +V+++++R + + Y + + + +AF +D M LI+ S Sbjct: 593 --IVDKIERRSYGNAETFYPMPY----------LSPKTQWFYKSAFTMDQMKLIDLMSVI 640 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 Q+ +DQ S+ L+++ + + ++L Y A GLK+ YY R++ SVE+ T Sbjct: 641 QEHVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692 >gi|227552560|ref|ZP_03982609.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257888212|ref|ZP_05667865.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257896900|ref|ZP_05676553.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|293378469|ref|ZP_06624632.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium PC4.1] gi|227178309|gb|EEI59281.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257824266|gb|EEV51198.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257833465|gb|EEV59886.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|292642798|gb|EFF60945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium PC4.1] Length = 719 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 167/657 (25%), Positives = 293/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +R I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DRLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNTLKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|255264072|ref|ZP_05343414.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thalassiobium sp. R2A62] gi|255106407|gb|EET49081.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thalassiobium sp. R2A62] Length = 757 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 157/593 (26%), Positives = 261/593 (44%), Gaps = 87/593 (14%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378 + R+A LA E +FYN L F ++ + +GT R L +CF + TVPD Sbjct: 35 WTRIATSLASVEKTPSDWGEKFYNALEDFKYLPAGRITAGAGTKRSVTLFNCFVMGTVPD 94 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 D+ GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 95 DMGGIFDHLREAALTMQQGGGIGYDFSTIRPKGAAVKGVAADASGPLSFMDVWDAMCRTI 154 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V + Sbjct: 155 MSAGSRRGAMMATMRCDHPDIEDFITAKS----DAARLRMFNVSVLVTDPFMEAVKADQP 210 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L +V + + AV LW K++ ++ Sbjct: 211 WDLVFKGQVC-----------------------------KTVQAVDLWNKIMQSTYDYAE 241 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616 P + F D N + +V + ++N C E L C LGSIN+ + + F Sbjct: 242 PGVIFIDRINKANNLGYVEEIAATNPCGEQPL----PPYGACLLGSINM-SRIVTDPFTD 296 Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D + + TAVR++DNV+D + ++ + R IGLG+ G AL ++ + Sbjct: 297 AAALDEAAMIDLVATAVRMMDNVVDASRFPLDAQRAEAQAKRRIGLGVTGLADALLMVGL 356 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y S +A ++ M I+ A ASV+LA+E+GA+ F + Q D++ Sbjct: 357 RYGSEDAARQTEQWMHAIARAAYLASVDLAKEKGAFPLFDADKYLQS----DAM------ 406 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791 +AM+ D+++ ++T G+RN+ +IAPT TI+ G VS I+P + Y Sbjct: 407 ---MAMD-------DDVRDAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYT 456 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + + D T +V+ + L+ + +D + D + P D ++ A A Sbjct: 457 RKVLQKDGTRTEEEVVDYAVK--LYRDIHGADAELPDHFVNAQTLAPLDHVRMQAAA--- 511 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKWID + S + E S + +Y +AW G K TTY Sbjct: 512 ------------QKWIDSSISKTINCPEDISFEDFKEVYMEAWDTGCKGCTTY 552 >gi|126463986|ref|YP_001045099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides ATCC 17029] gi|126105797|gb|ABN78327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides ATCC 17029] Length = 755 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 158/590 (26%), Positives = 257/590 (43%), Gaps = 86/590 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + FY+ L F F+ + +GT R L +CF + TVPD + Sbjct: 37 RIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F++ +K D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV+R + A LW +++ ++ P Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + F D N + + + ++N C E L C LGS+NL A + Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +L +R AVR++DNV+D + + + + R IGLG+ G AL ++ + Y Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + M+ I+ A AS +LA+E+GA+ F E Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 LA + + ++++ ++T G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 401 LASGSLTHMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +V+ + LW E M G+ +PD A P+ Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901 + + QKWID + S + E G ++ +Y AW G K TTY Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551 >gi|146279531|ref|YP_001169689.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC 17025] gi|145557772|gb|ABP72384.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC 17025] Length = 753 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 161/591 (27%), Positives = 255/591 (43%), Gaps = 88/591 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + + FY L F F+ + +GT R L +CF + TVPD + Sbjct: 37 RIARSLAEVEADPQLWEDRFYAALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F++ +K D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV++ + A LW +++ ++ P Sbjct: 213 L-----------TFGG------------------KVYKTLEARDLWNRIMRSTYDFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + + ++N C E L C LGS+N LA F Sbjct: 244 VIFIDRINRMNNLAYCETIAATNPCGEQPL----PPYGACLLGSVN-LARLVTGAFSDEA 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D L +R AVR++DNV+D + + + R IGLG+ G AL ++ + Y Sbjct: 299 RLDLAALDDLVRLAVRMMDNVVDASRFPLPEQANEAQMKRRIGLGVTGLADALLMVGLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA E + M+ I+ A ASV+LA+E+GA+ F E Sbjct: 359 GSEEAAERTEAWMKAIARSAYLASVDLAREKGAFPLF-------------------EAEK 399 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 LA + + +++++ +++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 400 YLASGSLTHMD-EDVREAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRK 458 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D T +V+ + LW E M D D + P D ++ A A Sbjct: 459 VLQKDGTRTEEEVVDYAVR--LWREKM-GDAPLPDYFVNAQTLAPLDHVRMQAAA----- 510 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKWID + S + E S +Y AW G K TTY Sbjct: 511 ----------QKWIDSSISKTINCPEDISFDDFADVYLAAWDQGCKGCTTY 551 >gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] Length = 830 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 160/630 (25%), Positives = 268/630 (42%), Gaps = 93/630 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA ET+ FY L F F+ + +GT R L +CF + TVPD++ Sbjct: 37 RIARALAAVETDAAVWEDRFYAALEDFRFLPAGRITAGAGTGRRVTLFNCFVMGTVPDNM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFIGAKS----DPARLRMFNMSVLVTDAFMEAVKADGSWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L + KV+ + A LW +++ ++ P Sbjct: 213 LLF-----------------------------DGKVYHTLKARDLWNRIMQATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + + ++N C E L C LGS+NL A + F Sbjct: 244 VIFIDRINKANNLAYCETIAATNPCGEQPL----PPYGACLLGSVNL-ARLVTDPFTDAA 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D + L +RTA+R++DN +D + +E + R IGLG+ G AL +L + Y Sbjct: 299 RLDPEALDDLVRTAIRMMDNTVDASKFPLEAQAREAEAKRRIGLGVTGLADALLMLGLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + M+ I+ A ASV+LA+E+GA+ F RD Sbjct: 359 GSDEAAAQTEAWMKAIARAAYLASVDLAKEKGAFPLFD--------------------RD 398 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 + T + ++++ V G+RN+ ++APT TI+ G VS I+P + Y + Sbjct: 399 AYLASGTMQAMDEDVRAAVAEHGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAYEYTRK 458 Query: 794 NMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + D + +++ Q RD+ +A + D + ++ +E + K+ A A Sbjct: 459 VLQKDGSRTEEKVIDYAVQMWRDVKGDAPLPDYFVNAQTLAPLEHV-----KMQAAA--- 510 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 QKW+D + S + E S + +Y +A+ G K R T Sbjct: 511 ------------QKWVDSSISKTINCPEDISFEAFKDVYMEAYETGCKGCTTYRPNDVTG 558 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 S L + K A P S+ ++G+ Sbjct: 559 ---SVLSVSEAKAAATPGERLRSARKAVGL 585 >gi|262283136|ref|ZP_06060903.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sp. 2_1_36FAA] gi|262261388|gb|EEY80087.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sp. 2_1_36FAA] Length = 719 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + + RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESSNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|225868772|ref|YP_002744720.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. zooepidemicus] gi|225702048|emb|CAW99656.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. zooepidemicus] Length = 719 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 158/590 (26%), Positives = 260/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + N LFSP V + L +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARHNDDMYLFSPYSVEKEYGLPFNYIDITSMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 331 NPNITKT--KIKARDLETEISKLQQESGYPYVINIDTANRSNPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+ R L V D Sbjct: 387 QVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTFVTD 441 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLMNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--AMNRTSRLP----WDEL 749 S ++A+ER + F+ S + G + I + EL ++ + +P W L Sbjct: 502 ESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQAADWKAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++ V G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RQAVMIDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + K +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATKHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|322385109|ref|ZP_08058756.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus cristatus ATCC 51100] gi|321270733|gb|EFX53646.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus cristatus ATCC 51100] Length = 719 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 179/657 (27%), Positives = 286/657 (43%), Gaps = 84/657 (12%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY---- 522 K D++ R ++ IPD F + +N LFSP + YG F AY Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEDMYLFSP---YSIEREYGVPF--AYIDIT 322 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y+ +I KI A L ++ + E+G+P++ D N +P G + S Sbjct: 323 EKYDELVANPKITK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPID--GKIIMS 379 Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI LN + E + CNLGS N++ + F +IRT R Sbjct: 380 NLCSEILQVQEPSLLNDAQEYIHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTR 434 Query: 631 VLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + T + N GLG MG S L I Y S EAVE Sbjct: 435 ALTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + E IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|332362637|gb|EGJ40435.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK49] Length = 719 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 284/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSRLPW 746 + S +A+ERG + +F+ S + G + D ++ EL + S W Sbjct: 499 TLVESNNIARERGVTFDNFEKSDYANGTYFDKYLTDEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|77465546|ref|YP_355049.1| ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1] gi|77389964|gb|ABA81148.1| Ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1] Length = 755 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 158/590 (26%), Positives = 256/590 (43%), Gaps = 86/590 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E E FY+ L F F+ + +GT R L +CF + TVPD + Sbjct: 37 RIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F++ +K D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV+R + A LW +++ ++ P Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + F D N + + + ++N C E L C LGS+NL A + Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +L +R AVR++DNV+D + + + + R IGLG+ G AL ++ + Y Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + M+ I+ A AS +LA+E+GA+ F E Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 L + + ++++ ++T G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 401 LGSGSLTHMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +V+ + LW E M G+ +PD A P+ Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901 + + QKWID + S + E G ++ +Y AW G K TTY Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551 >gi|329769049|ref|ZP_08260471.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] gi|328839540|gb|EGF89116.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] Length = 696 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 160/591 (27%), Positives = 271/591 (45%), Gaps = 75/591 (12%) Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG +R +L SCFL V D L I L+K GG+ + + +R G Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G ++GVIP K +Q G+R GA YL +H DV EFLD +K D+ Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R ++T +P LF +N + +F P + + + L + ++A Y + Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDLA--KYYDEFVVN 325 Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 E + RK +A R ML ++ +T G+P++ FKD N + +G V SNLCTEI Sbjct: 326 ENIMKRKYNA----RDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEI 381 Query: 589 TLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +ET+V CNL S+N++ N + K+ +I + + L Sbjct: 382 F---QLQETSVIKDYGEGDIIKRDISCNLASLNIV-----NVMESKKVKESIYSGMDALT 433 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D K+N ++GLG M L I Y S EA + A+ +++ Sbjct: 434 FVSDSTKIKNAPGVVKANEEFHSVGLGAMNLNGYLAKNCIAYDSEEAKDFANVFFMMMNY 493 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSRLP 745 + + S+++A++RG ++ F+ S + G + D + +V++ + ++ Sbjct: 494 YTLERSMQIAKQRGQSFKDFEKSDYYNGSYFAKYIEKDYLPKSDKVKELFEGIYIPTKED 553 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK R+K G+ ++ MAIAPT +I+ + + S+ P Sbjct: 554 WHSLKNRIKENGLYHAYRMAIAPTQSISYVQNSTSSVLP--------------------- 592 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 +V+++++R + + Y + + + +AF +D M LI+ S Q+ Sbjct: 593 IVDKIERRTYGNAETFYPMPY----------LSPKTQWYYKSAFTMDQMKLIDLMSVIQE 642 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 +DQ S+ LY++ + + ++L Y A GLK+ YY R++ SVE+ T Sbjct: 643 HVDQGISVILYVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692 >gi|325697178|gb|EGD39065.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK160] Length = 719 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 174/653 (26%), Positives = 283/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G + + G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFAKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|163732870|ref|ZP_02140315.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149] gi|161394230|gb|EDQ18554.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149] Length = 834 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 159/616 (25%), Positives = 268/616 (43%), Gaps = 87/616 (14%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I++ + + R+A LA E + +FY+ L F ++ + +GT Sbjct: 19 FKEADGAPIDVTVEDTWRRIARDLARVEKTPDIWEEQFYSALKDFKYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H DVE+F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W L ++ Q V+R + A Sbjct: 195 VLVTDPFMEAVKADGPWDLV----------------------FDGQ-------VYRTLQA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW +++ ++ P + F D N + + + ++N C E L C L Sbjct: 226 RDLWNRIMQATYDYAEPGVIFIDRINQANNLNYCETIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSIN+ A + F D L + TAVR++DNV+D + +E + H R I Sbjct: 282 GSINM-ARLVSAPFEEAAKLDEVALNDLVATAVRMMDNVVDASKFPLEAQAREAHAKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL ++ + Y S EA D + I+ A ASV+LA+E+GA+ F Sbjct: 341 GLGVTGLADALLMVGLRYGSDEAARQTDRWLHAIARAAYLASVDLAKEKGAFPLFDA--- 397 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 D+ + T + +++++ V+ G+RN+ +IAPT TI+ Sbjct: 398 -----------------DKYLASGTMQAMDEDVREAVREHGIRNALLTSIAPTGTISLYA 440 Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G VS I+P + Y + + D + +V+ Q +W E K+ D + Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRE------KFGD------K 486 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWL 894 +PD A + P+ ++ + QKW+D + S + E G +Y +AW Sbjct: 487 ELPD----YFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYMEAWD 542 Query: 895 MGLKTTYYLRSRSATS 910 G K R + T Sbjct: 543 SGCKGCTTYRPNAVTG 558 >gi|225351963|ref|ZP_03742986.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157210|gb|EEG70549.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 727 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 161/605 (26%), Positives = 259/605 (42%), Gaps = 90/605 (14%) Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 ++ L S F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 156 YFEELISGRFQPATPTFLNLGKAQRGEAVSCFLVRIEDNMESISRGINAALQLSKRGGGV 215 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA I +S GV+P +K+ D+ NQ G R+GA YL H D+ Sbjct: 216 ALLLSNLREAGAPIKRIKHQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIM 275 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLD ++ D++ R + IPD+ + ++ LFSP D+ + G+ F Sbjct: 276 HFLDTKRENADEKIRIKSLALGVVIPDITFELAKRHEPMALFSP---YDVERVMGRPFAD 332 Query: 521 A--YENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 ENY D I K + I A + + + FE+G+P++ F+D N +P G Sbjct: 333 VSISENYRNMVDDERIGKTY--IDAREFFMTLAELQFESGYPYMVFEDTVNRANPID--G 388 Query: 578 VVHSSNLCTEI-------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 + SNLC+EI + N + + CNLGS+N+ + L T Sbjct: 389 RIAMSNLCSEILQVQEPSTYHEDLSYNHVGRDVS-CNLGSLNIAKAMDGD------LGRT 441 Query: 625 IRTAVRVLDNV---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + A+R L +V DI C + +++N AIGLG M L I Y SPEA++ Sbjct: 442 VERAIRALTSVSEHTDIAC--VPSIRRANDEGHAIGLGQMNLHGFLARESIMYGSPEALD 499 Query: 682 IADESMEFISFHAISASVELAQERGA-YSSFK----------GSLWDQGVFPIDSIGLLA 730 D +++HA AS ELA ERG ++ F+ G+ +D+ S+ Sbjct: 500 FTDMYFMTVAYHAYRASHELAVERGTRFAGFERSAYAKPAGAGNYFDKYTNGERSLAPKT 559 Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 L R +P W L+ + G+ N A+ PT +I+ I + SI P Sbjct: 560 GKIASLFARRGIHIPNEDDWRRLRDDIIRDGIFNQYLQAVPPTGSISYINHSTSSIHPIA 619 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842 + ++ +G IG I + +D Sbjct: 620 SKIEIRK----------------------------------EGKIGRIYYPAPYMTNDNL 645 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + A A+EI ++++ + + +DQ SL L+ D + + L+ AW G+KT Y Sbjct: 646 QYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLY 705 Query: 902 YLRSR 906 Y+R R Sbjct: 706 YIRIR 710 >gi|119897702|ref|YP_932915.1| putative ribonucleoside reductase [Azoarcus sp. BH72] gi|119670115|emb|CAL94028.1| conserved hypothetical ribonucleoside reductase [Azoarcus sp. BH72] Length = 958 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 166/592 (28%), Positives = 256/592 (43%), Gaps = 84/592 (14%) Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L +CF+ V D + GI+ AL + A + GG+G D++ +R GA + GT Sbjct: 91 LINCFVQPVGDSVTEAVDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGAMVRGTASN 150 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + +++V + + V G R+GA L H D+EEF+ K+ GD + N Sbjct: 151 ASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDHGD----LTNFN 205 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D FM+ V + L E SD G Y+R R V+RK+ Sbjct: 206 ISVGVTDDFMRAVESDGDIELTHKSEPSDELKAAGA--------YQRDDGR---WVYRKV 254 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A ALW +++ ++ P I F D N + + + ++N C E L C Sbjct: 255 PARALWDQVMRSTYDHAEPGILFLDRMNQDNNLYYCETIEATNPCAEQPL----PPYGCC 310 Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 LGS+NL N +FDY + ++R+LDNV+D +E+ ++ + R Sbjct: 311 CLGSVNLTPFVKNPFTDKAEFDYAAFGKVVDVSIRMLDNVLDATHWPLEQQQREADSKRR 370 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG G AL +L Y S EA E A + E++ A AS ELA+ERGA+ F + Sbjct: 371 VGLGFTGLGDALIMLGKRYDSDEAREEARKISEYMRNRAYLASTELAKERGAFPLFNADM 430 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G N SRLP E+K +++ G+RNS+ ++IAPT TI A Sbjct: 431 YLSG------------------GNFASRLP-AEVKDKIRKHGIRNSHLLSIAPTGTISLA 471 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P + Y + D T + V + R L H G GN Sbjct: 472 FADNASNGIEPPFSYTYTRRKRMADGT-FKEYAVEDYAWR----------LYKHLG--GN 518 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 +E++P TA EI + + +ID ++++N+ D P D +Y Sbjct: 519 VEQLP----SYFVTALEISAQAHKDMVAAVAPYIDTSISKTVNVPEDYPYADFED-LYLT 573 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 AW GLK R S V G + +V T H + IP + Sbjct: 574 AWKAGLKGLATYRPNS-----------VLGSVLSVAPTSEQKQPHDVEIPDA 614 >gi|290580849|ref|YP_003485241.1| ribonucleotide reductase large subunit [Streptococcus mutans NN2025] gi|254997748|dbj|BAH88349.1| ribonucleotide reductase large subunit [Streptococcus mutans NN2025] Length = 719 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 156/590 (26%), Positives = 265/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL +K Sbjct: 211 AGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD F + +N LFSP + + + +I + E A Sbjct: 271 ADEKVRVKTLSLGITIPDKFYELARRNEDMYLFSPYSIEREYGVPYNYLDITEKYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + IK KI A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 331 NPKIIKT--KIKARDLETEISKLQQESGYPYVVNIDTANRANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N++ + F +I+ R L V D Sbjct: 387 QVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVTD 441 Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLV 501 Query: 697 ASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP----WDEL 749 S +A+ER + F+ S + G F G D++ + + +P W+ L Sbjct: 502 ESNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKVKELFKNHFIPQAEDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++ V G+ + N +A+AP +I+ I VS SI P + Sbjct: 562 RQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHP---------------------ITRR 600 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +++R E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 601 IEER---QEKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHVDQ 651 Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 652 GMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|24379141|ref|NP_721096.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus mutans UA159] gi|24377046|gb|AAN58402.1|AE014910_6 ribonucleotide reductase, large subunit [Streptococcus mutans UA159] Length = 719 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 156/590 (26%), Positives = 265/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL +K Sbjct: 211 AGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD F + +N LFSP + + + +I + E A Sbjct: 271 ADEKVRVKTLSLGVTIPDKFYELARRNEDMYLFSPYSIEREYGVPYNYLDITEKYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + IK KI A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 331 NPKIIKT--KIKARDLETEISKLQQESGYPYVVNIDTANRANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N++ + F +I+ R L V D Sbjct: 387 QVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVTD 441 Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLV 501 Query: 697 ASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP----WDEL 749 S +A+ER + F+ S + D F G D++ + + +P W+ L Sbjct: 502 ESNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKIKELFKNHFIPQAEDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++ V G+ + N +A+AP +I+ I VS SI P + Sbjct: 562 RQAVIKDGLYHQNRLAVAPNGSISYINDVSASIHP---------------------ITRR 600 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +++R E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 601 IEER---QEKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHVDQ 651 Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 652 GMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|327458664|gb|EGF05012.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1057] gi|332363058|gb|EGJ40845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK355] Length = 719 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|66394955|ref|YP_240947.1| ORF006 [Staphylococcus phage G1] gi|62636977|gb|AAX92088.1| ORF006 [Staphylococcus phage G1] Length = 704 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 167/592 (28%), Positives = 263/592 (44%), Gaps = 66/592 (11%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F STPT NSG +LSSC+L V D + + A + GG+ D T +R Sbjct: 149 FQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNGGGVAIDLTRIRP 208 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA + S+GVI F K +QGG R+G+ YL +H D+ + L +K Sbjct: 209 KGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHNDILDLLSSKKIN 268 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 + R ++ IP+ FM+ V + + F +++ ++ Y E I E Y++ Sbjct: 269 ASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDINKVYGKYLDELNID-EWYDKLL 327 Query: 530 DRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 D I KV K A + + E+G+P++ + D N P +++G V SNLCTEI Sbjct: 328 DNDSIGKV--KHDAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKNLGKVKMSNLCTEI 385 Query: 589 T-LNSSSE-------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + L SE VC LGS+NL+ N + L ++ R L Sbjct: 386 SQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLV-----NVVEKGLLNESVDIGTRALTK 440 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V DI + + +K+N RAIGLG M L I Y S EA+++ + I+F Sbjct: 441 VTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREALDLVNSLYSAINFQ 500 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PW 746 +I S+ +A+E G + F+ S + G + + I + + + A +++ W Sbjct: 501 SIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKKVLNKVYIPTQDDW 560 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 DEL K VK G+ N A APT +I+ + + SI P +++ GD Sbjct: 561 DELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSA--IENRQYGDMET----- 613 Query: 807 VNELKQRDLWDEAMISDLK--YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + +S + +++G TA++ID +I +++ Q Sbjct: 614 --------YYPMPYLSPITQFFYEGE----------------TAYKIDNKRIINTSAVVQ 649 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 K DQA S LY++ E KL +Y AW GLK+ YY RSR + +E T Sbjct: 650 KHTDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIECET 701 >gi|157150204|ref|YP_001450837.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gordonii str. Challis substr. CH1] gi|157074998|gb|ABV09681.1| ribonucleoside-diphosphate reductase large chain [Streptococcus gordonii str. Challis substr. CH1] Length = 719 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + + RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYASGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|325688331|gb|EGD30350.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK72] Length = 719 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|119383702|ref|YP_914758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paracoccus denitrificans PD1222] gi|119373469|gb|ABL69062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paracoccus denitrificans PD1222] Length = 754 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 172/645 (26%), Positives = 277/645 (42%), Gaps = 101/645 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 RVA LA E + FY L F F+ + L +GT R L +CF + T+PD + Sbjct: 37 RVARDLARVEKDPALWEDRFYAALEDFKFLPAGRILAGAGTGREVTLFNCFVMGTIPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F++ ++ D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFIEAKQ----DSARLRMFNLSVLVTDAFMEAVKADGPWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV+ + A LW +++ ++ P Sbjct: 213 L-----------QFGG------------------KVYHTVRARDLWNRIMRATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHF-ANNQ 615 + F D N ++ + V ++N C E L C LGS+NL A F A+ + Sbjct: 244 VIFIDRINQQNNLNYAETVAATNPCGEQPL----PPYGACLLGSVNLARLVEAPFTAHAR 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 + + L +RTAVR++DNV+D + + + R IGLG+ G AL +L + Y Sbjct: 300 LNPEALDELVRTAVRMMDNVVDASKFPLPQQSAEAQAKRRIGLGVTGLADALLMLGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 + +AVE M+ I+ A ASV+LA+E+GA+ F + + Sbjct: 360 AADAVEQTRVWMKAIARSAYLASVDLAREKGAFPLF-------------------DAKKY 400 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 LA R+ D L++ V G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 401 LASGFMRRMDAD-LREAVARHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459 Query: 795 MSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + D + +V+ Q RDL +A + D + ++ P D + A A Sbjct: 460 LQKDGSRTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLA-----PLDHVAMQAAA---- 510 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT-- 909 Q+W+D + S + E S + +Y AW G K R T Sbjct: 511 -----------QEWVDSSISKTINCPEDISFEDFKDVYLAAWDKGCKGCTTYRPNEVTGS 559 Query: 910 --SVEKSTLKG--VDGKLNAVPVTDP-------NSSTHSLGIPSS 943 SV + T + D + V +T+P +T+ L P S Sbjct: 560 VLSVSEKTEEAPQADKGADVVYLTEPLDRPAALEGATYKLKFPGS 604 >gi|315613101|ref|ZP_07888011.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus sanguinis ATCC 49296] gi|315314663|gb|EFU62705.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus sanguinis ATCC 49296] Length = 719 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 175/660 (26%), Positives = 291/660 (44%), Gaps = 88/660 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739 +++ + S +A+ERG + +F+ GS +D+ G F S + +D + Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 ATD---WAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E I + Y + + + IP + +A+++D +I+ Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|332361650|gb|EGJ39454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1056] Length = 719 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSSEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 VELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|254459677|ref|ZP_05073093.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacterales bacterium HTCC2083] gi|206676266|gb|EDZ40753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacteraceae bacterium HTCC2083] Length = 762 Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 164/595 (27%), Positives = 264/595 (44%), Gaps = 92/595 (15%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378 ++R+A LA E + E +FY L F ++ + +GT R+ L +CF + +PD Sbjct: 35 WVRIAKDLAKVEKDPEHWEEQFYAALEDFKYLPAGRITAGAGTARNVTLFNCFVMGAIPD 94 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 95 SMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVAADASGPLSFMDVWDAMCRTI 154 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 G R+GA+ A + H D+E+F+ + D R N + I D FM+ V +A Sbjct: 155 MSAGSRRGAMMATMRCDHPDIEDFITAKS----DAARLRMFNVSVLITDPFMEAVKADAE 210 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L EF+ GE V+R + A+ LW K++ ++ Sbjct: 211 WDL---------------EFD------------GE--VYRTVRALELWNKIMQGTYDYAE 241 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 P + F D N + + + ++N C E L C LGSIN LA N F+ Sbjct: 242 PGVIFIDRINKANNLGYCETIAATNPCGEQPL----PPYGACLLGSIN-LARLVPNPFEV 296 Query: 619 D------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D L + TAVR++DNV+D + ++ + R IGLG+ G AL ++ Sbjct: 297 DAALDVSALNELVATAVRMMDNVVDASKFPLDAQAREAAAKRRIGLGVTGLADALLMVGQ 356 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y S EA D+ + I+ A ASV+LA+E+GA+ F D+ LA Sbjct: 357 RYGSEEAARQTDQWLHAIARAAYLASVDLAKEKGAFPLF------------DADAFLAS- 403 Query: 733 RDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790 + L DE ++ ++ G+RN+ +IAPT TI+ G VS I+P + Y Sbjct: 404 --------GAMLDMDEDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 455 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + + D + +V+ Q +W + K+ D + +PD A Sbjct: 456 SRKVLQKDGSRTEEEVVDYAVQ--MWRD------KFGD------KELPDYFVNAQTLA-- 499 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLK--TTY 901 P+ + + QKW+D + S + E DF +Y +AW G K TTY Sbjct: 500 --PLDHVRMQAAAQKWVDSSISKTINCPEDIAFD-DFKEVYMEAWDSGCKGCTTY 551 >gi|194014861|ref|ZP_03053478.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus pumilus ATCC 7061] gi|194013887|gb|EDW23452.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus pumilus ATCC 7061] Length = 700 Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 172/672 (25%), Positives = 293/672 (43%), Gaps = 85/672 (12%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRV 324 L SM D V+ A Y + F F ++ Y+ Y L N + +E + V Sbjct: 69 LRQYSMADIKEVFEA---AYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISVV 125 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGI 383 A+ A + EK A+EF L+ + + STPT N+G R +L SCFL V D L I Sbjct: 126 ALFFAGGDKEK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDI 182 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ + L+K GG+ + + +R G I ++GV+ +K+ ++ +Q G+ Sbjct: 183 SRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQ 242 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+G+ AYL +H D+ +FLD +K + D+ R ++ IPD F++ ++ F Sbjct: 243 RQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIELAREDKTAYTFY 302 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P V + + E ++ E Y+ + +IK K++ L K+ + E+G+P+I F Sbjct: 303 PHTVYKEYGQHLDEMDME-EMYDELVENPKIKK-EKVNPRKLLEKLAVLRSESGYPYIMF 360 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHF 611 +D N H+ V SNLC+E+ S A CNLGS+N++ Sbjct: 361 QDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGLDISCNLGSLNIMNVM 420 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + T++ A L V + + +K+N ++IGLG M L Sbjct: 421 KNKS-----IEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGAMNLHGYLAQN 475 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL 729 + Y S EA + A+ +++++I S ELA+E+G + ++GS + G + + Sbjct: 476 QMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATGEYFNKYVEND 535 Query: 730 AEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E A M+ ++ W LK V GM +S + IAPT +I+ + + S+ Sbjct: 536 FTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSISYVQSATASVM 595 Query: 784 P--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 P +Y N M G + N F E Sbjct: 596 PIMERIEERTYGNSKTYYPMPG-LSAQNWFFYKE-------------------------- 628 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 A+++D +++ + Q+ +DQ S L+L D + + L+ I A Sbjct: 629 ------------AYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHH 676 Query: 895 MGLKTTYYLRSR 906 G+KT YY R++ Sbjct: 677 KGIKTLYYARTK 688 >gi|330683859|gb|EGG95633.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU121] Length = 701 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 176/678 (25%), Positives = 291/678 (42%), Gaps = 92/678 (13%) Query: 275 DFDLVYLANDLKYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329 D DLV + +Y + F+ Y+ Y Y L N + +E V+M LA Sbjct: 75 DSDLVEIT---EYAKSINFQFASYMSASKFYKDYALKTNDKQQYLEDYNQHVAIVSMYLA 131 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQ 388 + ++ K +F + + + +TPT N+G R +L SCFL V D L I Sbjct: 132 NGDKDQAK---QFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 188 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + + +R G I G G ++GV+P K +Q G+R GA Sbjct: 189 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAG 248 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL +H DVEEFLD +K D+ R ++T +P F + + +F+P V Sbjct: 249 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK 308 Query: 509 ----------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 DL Y +A N E+ +K A + + ++G+ Sbjct: 309 QEYGVTLDDIDLEKYYDD--MVANPNVEK----------KKKDAREMLNTIAQTQLQSGY 356 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSIN 606 P++ FKD N +G + SNLCTEI +N E + CNLGS+N Sbjct: 357 PYLMFKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLN 416 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 ++ N + K ++ T + L V D N KK+N ++GLG+M Sbjct: 417 IV-----NVMESQKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHG 471 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--P 722 L I Y S EA + A+ +++++I S+++A+ERG Y F S + G + Sbjct: 472 YLAKNKIGYESEEAKDFANIFFMMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEF 531 Query: 723 IDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 S + + + +P W L+K V+ G+ ++ +AIAPT +I+ + Sbjct: 532 YTSQEFEPQFEKVRELFKGFEIPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNA 591 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + S+ P +V+++++R + + + + Sbjct: 592 TSSVMP---------------------IVDQIERRTYGNAETFYPMPF----------LS 620 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897 + + +AF D M LI+ S Q +DQ S LY++ E S ++L +Y A GL Sbjct: 621 PETMWYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGL 680 Query: 898 KTTYYLRSRSATSVEKST 915 K+ YY R++ SVE+ T Sbjct: 681 KSLYYTRNK-LLSVEECT 697 >gi|332365966|gb|EGJ43722.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1059] Length = 719 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGGTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|328945481|gb|EGG39632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1087] Length = 719 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFVPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|223932818|ref|ZP_03624815.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus suis 89/1591] gi|330833007|ref|YP_004401832.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus suis ST3] gi|223898527|gb|EEF64891.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus suis 89/1591] gi|329307230|gb|AEB81646.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus suis ST3] Length = 719 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 169/654 (25%), Positives = 289/654 (44%), Gaps = 76/654 (11%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E+ A+ N + Sbjct: 88 DQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGNEELALNLANEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPRIRK-TKIKARDLETEISKLQQESGYPYVINIDTANRSNPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N S E + CNLGS N++ + F ++RT R L Sbjct: 383 SEILQVQTPSVINDSQEYLTMGTDVSCNLGSTNIVNLMKSPDF-----GRSVRTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + + N +IGLG MG S L I Y S AVE + +++ Sbjct: 438 YVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNY 497 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVF----PIDSIGLLAEVRDEL--AMNRTSRLP 745 + S +A+ER A + +F+ S + G + +E EL + S Sbjct: 498 WTLVESNNIARERKATFHNFEKSKYADGTYFDKYVTGDYQPQSERVKELFEGIFIPSGQD 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W +L+++VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 558 WADLREKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------------- 601 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 E +Q E I + Y + E IP + +A+++D +I+ + + Sbjct: 602 ---EERQ-----EKKIGKIYYPAAGLAT-ETIP-----FYKSAYDMDMRKVIDVYAAATE 647 Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 648 HVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|332686051|ref|YP_004455825.1| ribonucleotide reductase of class Ib (aerobic), subunit alpha [Melissococcus plutonius ATCC 35311] gi|332370060|dbj|BAK21016.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit [Melissococcus plutonius ATCC 35311] Length = 720 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 169/664 (25%), Positives = 294/664 (44%), Gaps = 80/664 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F F+ ++ Y +Y L N + + +++ RVA E+ A+ + + Sbjct: 88 EQKFQFQSFMAAYKFYSQYALKTNDGTMYL-ESYEDRVAFNALYFADGNEELAITLADEM 146 Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGKKRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R A I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL Sbjct: 207 NLREASAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIERFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ IPD F + N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGILIPDKFYELTCNNEEMYLFSPYSVEKEYGIPFSYVDITKE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 ++ + +I + KI+A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DQLVENPKIHKY-KINARELENEISKLQQESGYPYVINIDTANKNNPVD--GKIVMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI LN E E CNLGS N++ + F A T R + D Sbjct: 383 SEILQVQTPSILNDKQEYEVLGEDISCNLGSTNIVNLMESPDFGKSVCAMT-RALTYITD 441 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 + +I+ + NHT IGLG MG + L I Y S E++E +++ Sbjct: 442 SSFIEVVPSIQNGNQHNHT---IGLGAMGLHTFLAKNQITYGSKESIEFTTIYFMLLNYW 498 Query: 694 AISASVELAQERGA------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-- 745 + S ++A+ER YS + + D + A+++ + + +P Sbjct: 499 TLVESNKIAKERQQVFHRFEYSDYADGSYFSKYLTGDFLPKSAKIK---GLFKDIFIPAV 555 Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W +L+ V+ G+ + N +A+AP +I+ I S S+ P Q Sbjct: 556 EDWQQLRDAVQKDGLYHQNRLAVAPNGSISYINDTSASLHPITQ---------------- 599 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L+ E +++ + Y S+ N IP + +A+++D +I+ + Sbjct: 600 --LIEERQEKK------TGKIYYPAPSLSNT-TIP-----YYTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 Q+ IDQ SL L++ + P G + L + A+ G+K+ YY+R+ + Sbjct: 646 QQHIDQGMSLTLFMRSEIPEGLYEWKKTTKQTTRDLTILRHYAFNKGIKSIYYVRTFTED 705 Query: 910 SVEK 913 S E+ Sbjct: 706 SGEE 709 >gi|323352632|ref|ZP_08087602.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis VMC66] gi|322121668|gb|EFX93414.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis VMC66] Length = 719 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 283/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELAHKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + ++ S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFASIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|315223182|ref|ZP_07865043.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus anginosus F0211] gi|315187614|gb|EFU21368.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus anginosus F0211] Length = 719 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 182/662 (27%), Positives = 287/662 (43%), Gaps = 90/662 (13%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +E+DF F+ ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HEQDFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 IIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-- 522 +K D++ R ++ IPD F + +N LFSP + YG F AY Sbjct: 266 TKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSP---YSIEREYGVPF--AYID 320 Query: 523 --ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y +I KI A L ++ + E+G+P++ D N +P G + Sbjct: 321 ITEKYNELVANPKISK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKII 377 Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI LN + E + CNLGS N++ + F +IRT Sbjct: 378 MSNLCSEILQVQEPSLLNDAQEFVRLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTM 432 Query: 629 VRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 R L V D + TI+ HT GLG MG S L I Y S E+VE Sbjct: 433 TRALTFVTDSSHIKAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAESVEFTS 489 Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV-FPIDSIGLLAEVRDELAMNRT- 741 +++ + S +A+ERG + +F+ S + G F G D + T Sbjct: 490 IYFMLMNYWTLVESNNIARERGMTFHNFEKSDYANGTYFDKYLTGEFVPQSDRVKELFTG 549 Query: 742 ----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 S W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 550 IFIPSAEDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-------- 601 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 E +Q E I + Y + + E IP + +A+++D +I Sbjct: 602 -----------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVI 639 Query: 858 ESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYL 903 + + + +DQ SL L++ D P G + L + A+ G+K+ YY+ Sbjct: 640 DVYAAATEHVDQGLSLTLFMRSDIPQGLYEWKTECKQTTRDLSILRNYAFNKGIKSIYYV 699 Query: 904 RS 905 R+ Sbjct: 700 RT 701 >gi|125717618|ref|YP_001034751.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK36] gi|125497535|gb|ABN44201.1| Ribonucleoside-diphosphate reductase, putative [Streptococcus sanguinis SK36] Length = 719 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSPEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|332292140|ref|YP_004430749.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter diaphorus 4H-3-7-5] gi|332170226|gb|AEE19481.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter diaphorus 4H-3-7-5] Length = 596 Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 160/596 (26%), Positives = 253/596 (42%), Gaps = 128/596 (21%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +FY +S F ++P N G SCF + + DD+ I E M++K GG Sbjct: 86 KFYGYMSEGFFSLASPVWSNFGKERGLPISCFGSHISDDMGNILYTQSEVGMMSKLGGGT 145 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA + NG++ G + +++ V+QG R+G YL H D+E Sbjct: 146 SGYFGKIRPRGADVK-NNGQASGSVHIMQLFESMVDVVSQGSVRRGRFSPYLPIEHADIE 204 Query: 461 EFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFL + + TH + N W+ ++ Sbjct: 205 EFLKIGTEGNSIQELTHGVTVTNEWMEEM------------------------------- 233 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN-----IRSPQQ 574 IA ++ +R +LW K+L E G+P+I F D N + Sbjct: 234 IAGDSAKR----------------SLWAKVLQSRGEMGYPYIFFTDNANNGAADVYKDND 277 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632 H +++SNLCTEI L S+ + + VC L S+N+L YDK +T + T V L Sbjct: 278 HK--IYASNLCTEIMLPSNDDWSFVCVLSSVNVL--------HYDKWKNTDAVETMVYFL 327 Query: 633 DNVIDINCHTIEKAKKSN------------------HTHRAIGLGLMGFQSALHLLHIPY 674 D VI +E+ + S+ +R++GLG++G+ S L +P+ Sbjct: 328 DAVITEFLEKLERYRDSDSREDRQTFLFMERAYNFAKANRSLGLGVLGWHSLLQSRMLPF 387 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + E + I + AS ELA+ G KG Sbjct: 388 NSQEAYNLNSEIFKAIKDKSYEASEELAKTFGEPEVLKG--------------------- 426 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 G RN+ A+APT + A I G VSQ I+P + N+YVK Sbjct: 427 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKD 465 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 T+ N FL L+++ + + ++ DGS+ ++E + ++ K T EID Sbjct: 466 IAKIKTTIKNPFLEELLEEKGMNTTEVWRSIRDMDGSVQHLEFLSENEKDTFKTYSEIDQ 525 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 M +I A+ RQ IDQ QS+N+ + E K+++ I+ AW +GLK+ YY S +A Sbjct: 526 MDIIYQAANRQNHIDQGQSVNIIVHPEMPVKEINKIHVTAWKLGLKSLYYQHSMNA 581 >gi|270292679|ref|ZP_06198890.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus sp. M143] gi|270278658|gb|EFA24504.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus sp. M143] Length = 719 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 175/660 (26%), Positives = 289/660 (43%), Gaps = 88/660 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 EELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y SPE++E Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739 +++ + S +A+ERG + F+ GS +D+ G F S + +D Sbjct: 495 MNYWTLVESNNIARERGITFHKFEKSDYANGSYFDKYVTGEFIPKSDRVKELFKDVFI-- 552 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 S W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 553 -PSAADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E I + Y + + + IP + +A+++D +I+ Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|327468919|gb|EGF14391.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK330] Length = 719 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|212716022|ref|ZP_03324150.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM 16992] gi|212661389|gb|EEB21964.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM 16992] Length = 698 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 165/615 (26%), Positives = 264/615 (42%), Gaps = 94/615 (15%) Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 ++ L S F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 127 YFEELVSGRFQPATPTFLNLGKAQRGEAVSCFLIRIEDNMESISRGINAALQLSKRGGGV 186 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA I +S G++P +K+ D+ NQ G R+GA YL H D+ Sbjct: 187 ALLLSNLREAGAPIKRIKHQSSGIVPVMKLLEDSFSYANQLGARQGAGAVYLSAHHPDIM 246 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLD ++ D++ R + IPD+ + ++ LFSP D+ + G+ F Sbjct: 247 HFLDTKRENADEKIRIKSLALGVVIPDITFELAKRHERMALFSP---YDVERVMGRPFAD 303 Query: 521 A--YENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 ENY D I K + I A + + + FE+G+P++ F+D N +P G Sbjct: 304 VSISENYRNMVDDERIGKTY--IDAREFFMTLAELQFESGYPYMVFEDTVNRANPID--G 359 Query: 578 VVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFDYDKLAST 624 + SNLC+EI L T CNLGS+N+ + L T Sbjct: 360 RIAMSNLCSEI-LQVQEPSTYHEDLSYDHVGRDVSCNLGSLNIAKAMDGD------LGRT 412 Query: 625 IRTAVRVLDNV---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + A+R L +V DI C + +++N AIGLG M L I Y SPEA++ Sbjct: 413 VERAIRALTSVSERTDIAC--VPSIRRANDEGHAIGLGQMNLHGFLARESIMYGSPEALD 470 Query: 682 IADESMEFISFHAISASVELAQERG---------AYS--SFKGSLWDQ---GVFPI-DSI 726 D +++HA AS ELA ERG AY+ + G+ +D+ G P+ Sbjct: 471 FTDMYFMTVAYHAYRASHELAVERGTRFVGFERSAYAKPTGAGNYFDKYTNGERPLAPKT 530 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 G +A + ++ W L+ + G+ N A+ PT +I+ I + SI P Sbjct: 531 GKVASLFARRGIHIPDEDDWRRLRDDIIRDGIFNQYLQAVPPTGSISYINHSTSSIHPIA 590 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842 + ++ +G IG I + +D Sbjct: 591 SKIEIRK----------------------------------EGKIGRIYYPAPYMTNDNL 616 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + A A+EI ++++ + + +DQ SL L+ D + + L+ AW G+KT Y Sbjct: 617 QYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLY 676 Query: 902 YLRSR----SATSVE 912 Y+R R S T V+ Sbjct: 677 YIRIRQQALSGTEVQ 691 >gi|324993304|gb|EGC25224.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK405] gi|324995392|gb|EGC27304.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK678] gi|327461575|gb|EGF07906.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1] gi|327473299|gb|EGF18719.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK408] Length = 719 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|221369551|ref|YP_002520647.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides KD131] gi|221162603|gb|ACM03574.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides KD131] Length = 755 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 257/590 (43%), Gaps = 86/590 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + FY+ L F F+ + +GT R L +CF + TVPD + Sbjct: 37 RIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F++ +K D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV+R + A LW +++ ++ P Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + F D N + + + ++N C E L C LGS+NL A + Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +L +R AVR++DNV+D + + + + R IGLG+ G AL ++ + Y Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + M+ I+ A AS +LA+E+GA+ F E Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 LA + + ++++ +++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 401 LASGSLTHMD-EDVRAAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +V+ + LW E M G+ +PD A P+ Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901 + + QKWID + S + E G ++ +Y AW G K TTY Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551 >gi|222153354|ref|YP_002562531.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus uberis 0140J] gi|222114167|emb|CAR42680.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus uberis 0140J] Length = 719 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 161/600 (26%), Positives = 269/600 (44%), Gaps = 92/600 (15%) Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522 D++ R ++ +PD F + QN LFSP +V +E+ +A+ Sbjct: 270 NADEKVRVKTLSLGLTVPDKFYELARQNEDMYLFSPYDVE-------REYGVAFNYIDIT 322 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y+ +I KI A L ++ + E+G+P+I D N +P G + S Sbjct: 323 EKYDELVANPKITK-TKIRARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMS 379 Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI +N + E + CNLGS N+L + F +I+ R Sbjct: 380 NLCSEILQVQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTR 434 Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N GLG MG S L HI Y SPE+VE D Sbjct: 435 ALTFVTDSSQIEAVPTVKNGNQQAHTFGLGAMGLHSFLAKNHIEYGSPESVEFTDIYFML 494 Query: 690 ISFHAISASVELAQER-GAYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739 +++ + S +A+ER + F+ GS +D+ G F + L+ E+ + + Sbjct: 495 MNYWTLVESNNIARERQTTFVGFEKSKYADGSYFDKYVTGQF-VPKSDLVKELFKDHFIP 553 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + S W+ L++ V+ G+ + N +A+AP +I+ I S SI P Q + Sbjct: 554 QAS--DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI---------- 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E I + Y + + + IP + +A+++D +I+ Sbjct: 602 ---------EGRQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATQHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|149369594|ref|ZP_01889446.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified eubacterium SCB49] gi|149357021|gb|EDM45576.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified eubacterium SCB49] Length = 596 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 162/597 (27%), Positives = 252/597 (42%), Gaps = 126/597 (21%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A +FY +S + ++P N G + SCF + + DD+ I E M++K G Sbjct: 84 ADKFYGYMSEGFYSLASPVWSNFGKKRGLPISCFGSHIDDDIGNILYTQSEVGMMSKLGG 143 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G + +R GA I NG++ G + +++ V+QG R+G YL H D Sbjct: 144 GTSGFFGKIRPRGAAIT-NNGEASGAVHIMRLFESMVDVVSQGSVRRGRFSPYLPIDHAD 202 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 ++EFL++ + TH + N W+ ++ Sbjct: 203 IKEFLEIGSEGNPIQELTHGVTVTNEWMEEM----------------------------- 233 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQ 574 IA + +R +W K+L E G+P++ F D N + Q Sbjct: 234 --IAGDEEKR----------------TIWAKVLQSRGEMGYPYVFFTDNANNGAADVYQD 275 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632 +H+SNLCTEI L S + VC L SIN+L YDK T + T V L Sbjct: 276 KNHKIHASNLCTEIMLPSDHNWSFVCVLSSINVL--------HYDKWKDTDAVETMVYFL 327 Query: 633 DNVIDINCHTIEKAKKSN------------------HTHRAIGLGLMGFQSALHLLHIPY 674 D VI +E K S +RA+GLG++G+ S L + Sbjct: 328 DAVITEFLEKLESYKNSEDREDRQTFLFMERAYNFAKENRALGLGVLGWHSLLQSKKHAF 387 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + E + I + AS ELA+ G KG Sbjct: 388 NSQEAFNLNSEIFKIIKDKSYKASEELAKAFGEPEVLKG--------------------- 426 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 G RN+ A+APT + A I G VSQ I+P + N+YVK Sbjct: 427 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKD 465 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 T+ N FLV L+++ + + D++ DGS+ +++ + ++ K + T EID Sbjct: 466 IAKIKTTIKNPFLVELLQEKGMDTREVWLDIRDKDGSVQHLDFLTENEKDVFKTYSEIDQ 525 Query: 854 MWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 M +I A+ RQ IDQ QS+N+ + D P+ K+++ ++ AW +GLK+ YY S +A Sbjct: 526 MDIIYQAANRQNHIDQGQSVNIIVHPDMPT-KEVNKLHITAWKLGLKSLYYQHSMNA 581 >gi|171779599|ref|ZP_02920555.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281701|gb|EDT47135.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 719 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 267/590 (45%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R + SCFL +V DD+ I ++ L++ GG+G + + +R Sbjct: 151 YQPATPSFLNAGRSRRGEFVSCFLISVTDDMNAIGRSINSALQLSRIGGGVGINLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL +K Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD F + +N LFSP V + + +I E Y++ Sbjct: 271 ADEKVRVKTLSLGITIPDKFYELARKNEDMYLFSPYSVEREYGVPYSYVDITAE-YDKMV 329 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 I V KI A L ++ + E+G+P++ D N +P G + SNLC+E+ Sbjct: 330 ANPNI-VKTKIKARDLETEISKLQQESGYPYVINIDTANRTNPID--GKIIMSNLCSEVL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N++ + F +I+ R L V D Sbjct: 387 QVQKPSIINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVSD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + ++ K N GLG MG + L HI Y SPE++E + +++ + Sbjct: 442 TSSIESVPTIKHGNEQAHTFGLGAMGLHTYLAQNHIHYGSPESIEFTNIYFMLLNYWTLV 501 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDEL 749 S ++A+ER + F+ S + G + D + V++ A + S W EL Sbjct: 502 ESNQIARERKQTFVGFEKSKYADGSYFDKYITGDFVPKSDRVKELFAEHFIPSGKDWAEL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V G+ + N +A+AP +I+ I VS S+ P Q + E Sbjct: 562 RDAVMIDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L D P G + L + A+ GLK+ YY+R+ Sbjct: 652 GLSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGLKSIYYIRT 701 >gi|325694008|gb|EGD35926.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK150] Length = 719 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 175/653 (26%), Positives = 283/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVLNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E + CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|332561218|ref|ZP_08415536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides WS8N] gi|332275016|gb|EGJ20332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides WS8N] Length = 755 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 256/590 (43%), Gaps = 86/590 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E E FY+ L F F+ + +G+ R L +CF + TVPD + Sbjct: 37 RIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGSGRTVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F++ +K D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G KV+R + A LW +++ ++ P Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + F D N + + + ++N C E L C LGS+NL A + Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +L +R AVR++DNV+D + + + + R IGLG+ G AL ++ + Y Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + M+ I+ A AS +LA+E+GA+ F E Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 L + + ++++ ++T G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 401 LGSGSLTHMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +V+ + LW E M G+ +PD A P+ Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901 + + QKWID + S + E G ++ +Y AW G K TTY Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551 >gi|77413116|ref|ZP_00789316.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] gi|77160817|gb|EAO71928.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] Length = 719 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 167/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++ F F+ ++ Y +Y L N + ++ RV EK A + Sbjct: 87 FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEKLATDLALE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLRDAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + N LFSP + + + +I + Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K KI+A L ++ + E+G+P+I D N +P G + SNL Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPID--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+T R L Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D N + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745 + + S +A+ER + F+ S + G + + G D++ ++ +P Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 E +Q E I + Y + + IP + +A+++D +I+ + Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|319938785|ref|ZP_08013149.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] gi|319811835|gb|EFW08101.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] Length = 719 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 180/662 (27%), Positives = 289/662 (43%), Gaps = 90/662 (13%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++DF F+ ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HDQDFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 IIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-- 522 +K D++ R ++ IPD F + +N LFSP + YG F AY Sbjct: 266 TKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSP---YSIEREYGVPF--AYID 320 Query: 523 --ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y+ +I KI A L ++ + E+G+P++ D N +P G + Sbjct: 321 ITEKYDELVANPKINK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKII 377 Query: 581 SSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI LN + E CNLGS N++ + F +IRT Sbjct: 378 MSNLCSEILQVQESSLLNDAQEFLRLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTM 432 Query: 629 VRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 R L V D + TI+ HT GLG MG S L I Y S E+VE Sbjct: 433 TRALTFVTDSSHIKAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIAYGSAESVEFTS 489 Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRT 741 +++ + S +A+ERG + +F+ S + G F G D + + + Sbjct: 490 IYFMLMNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKD 549 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 +P W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 550 IFIPTAADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-------- 601 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 E +Q E I + Y + + E IP + +A+++D +I Sbjct: 602 -----------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVI 639 Query: 858 ESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYL 903 + + + +DQ SL L++ D P G + L + A+ G+K+ YY+ Sbjct: 640 DVYAAATEHVDQGLSLTLFMRSDIPQGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYV 699 Query: 904 RS 905 R+ Sbjct: 700 RT 701 >gi|86140896|ref|ZP_01059455.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Leeuwenhoekiella blandensis MED217] gi|85832838|gb|EAQ51287.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Leeuwenhoekiella blandensis MED217] Length = 600 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 162/594 (27%), Positives = 255/594 (42%), Gaps = 124/594 (20%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +FY + +F ++P N G + SCF + + DD+ I E M++K GG Sbjct: 90 KFYKYMGEGYFSLASPVWSNFGKKRGLPISCFGSHIDDDMGNILYTQSEVGMMSKLGGGT 149 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA + NG + G + +++ + V+QG R+G YL H D++ Sbjct: 150 SGYFGKIRHRGAAVK-NNGYASGAVHIMQLFDKMVDVVSQGSVRRGRFSPYLPISHPDIK 208 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL++ ++ TH VT ++ W Sbjct: 209 EFLEIGTEGNSIQQLTHG--------------VTVDSTWM-------------------- 234 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E + D+ E+ W K+L E G+P+I + D N P + H Sbjct: 235 -QEMIDGDTDKREV-----------WAKVLQRRGEMGYPYIFYTDNANNGKPDVYKDKGH 282 Query: 581 ---SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVLDNV 635 +SNLCTEI L SS E + VC L SIN+L YDK +T + T V LD V Sbjct: 283 DIYASNLCTEIMLPSSDEWSFVCVLSSINVL--------HYDKWKNTDAVETMVCFLDAV 334 Query: 636 IDINCHTIEKAKKSNH------------------THRAIGLGLMGFQSALHLLHIPYASP 677 + +E+ + S++ ++RA+GLG++G+ S L + S Sbjct: 335 LTEFIDKLEEYRDSDNRDHRQTFMFMERAYNFAKSNRALGLGVLGWHSLLQSKRHAFDSQ 394 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ E I + AS ELA++ G + KG Sbjct: 395 EAYDLNSEIFREIKQRSYKASEELAEKFGEPETLKG------------------------ 430 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMS 796 G RN+ AIAPT + A I G VSQ I+P + N+YVK Sbjct: 431 ------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNVYVKDIAK 472 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 T+ N FL +++ + + ++ +DGS+ ++E + + K + T EID M + Sbjct: 473 IKTTIKNPFLEELFEEKGMNTPEVWRSVRDNDGSVQHLEFLTEQEKDVFKTYAEIDQMAI 532 Query: 857 IESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I A+ RQ IDQ QS+NL + D P K+++ I+ AW +GLK+ YY S +A Sbjct: 533 IYQAANRQNHIDQGQSINLLVHPDMPI-KEINKIHITAWKLGLKSLYYQHSMNA 585 >gi|228476825|ref|ZP_04061470.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus salivarius SK126] gi|228251399|gb|EEK10544.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus salivarius SK126] Length = 719 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 166/608 (27%), Positives = 269/608 (44%), Gaps = 80/608 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 EK A + N + + +TP+ N+G +R +L SCFL V DD+ I ++ L+ Sbjct: 136 EKLASDLANEMIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLS 195 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ Sbjct: 196 RIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDV 255 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + N LFSP V Y Sbjct: 256 FHPDILAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSV---EKEY 312 Query: 515 GKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 GK + +I E A+ K KI+A L ++ + E+G+P+I D N + Sbjct: 313 GKPYNYIDITAMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRHN 370 Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI LN + E + CNLGS N+L + F Sbjct: 371 PID--GKIIMSNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF--- 425 Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +IR L V D + + K N GLG MG S L HI Y SPE Sbjct: 426 --GRSIRAMTCALTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPE 483 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL 736 +VE + +++ + S +A+ER + F+ S + D F G D + Sbjct: 484 SVEFTNIYFMLMNYWTLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRI 543 Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + +P W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + Sbjct: 544 KELFDGHFIPQAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-- 601 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 E +Q E I + Y + + + IP + +A+++ Sbjct: 602 -----------------EERQ-----EKKIGKIYYPANGL-STDTIP-----FYTSAYDM 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897 D +I+ + + +DQ SL L+L ++ + + L + A+ G+ Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGI 693 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 694 KSIYYIRT 701 >gi|257092627|ref|YP_003166268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045151|gb|ACV34339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 969 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 155/547 (28%), Positives = 246/547 (44%), Gaps = 73/547 (13%) Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L +CF+ + D + GI+ AL E A + GG+G D++ +R +GA + GT + Sbjct: 97 LINCFVQPIGDSVVEIVDGKPGIYSALAEAAETMRRGGGVGYDFSAIRPMGAIVKGTQSR 156 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + +++V + + V G R+GA L H D+E F+ K+ GD + N Sbjct: 157 ASGPVSYMRVFDRSCETVESAGSRRGAQMGVLRCDHPDIEVFIHA-KDHGD----LTNFN 211 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D FM+ V +A EV H ++R D G I V+R++ Sbjct: 212 VSIAVTDAFMEAVEADA--------EVELTHRAEPNADMKRASAFQR--DDG-IWVYRRV 260 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW +++ ++ P I F D N + + V+ ++N C E L C Sbjct: 261 RARDLWDQVMKSTYDHAEPGILFLDRMNKDNNLYYCEVIEATNPCAEQPL----PPYGCC 316 Query: 601 NLGSINLL-----AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 LGSINL A A +FD+ I+ + R+LDNV+D+ +++ ++ R Sbjct: 317 CLGSINLTLFVKDAFSARAEFDFAAFGEVIKVSTRMLDNVLDVTAWPLDRQREEAANKRR 376 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG G L +L + Y PEA + EF+ A ASV+LA+ERGA+ F L Sbjct: 377 VGLGFTGLGDTLCMLCLRYDRPEATAMGARISEFMRDTAYLASVDLAKERGAFPLFNAEL 436 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G N SRLP E+K ++ G+RNS+ ++IAPT TI A Sbjct: 437 YLSG------------------GNFASRLP-TEIKAEIRKHGLRNSHLLSIAPTGTISLA 477 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P + Y + D T + + V + R L H G G+ Sbjct: 478 FADNASNGIEPPFSWTYSRKKRMADGT-LKEYAVEDYAWR----------LYKHQG--GD 524 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 +E++PD TA EI + + +ID ++++N+ D P D +Y Sbjct: 525 VEKLPD----YFVTALEISAKAHKDMVAAVAPYIDTSISKTVNVPADYPYEDFQD-LYLS 579 Query: 892 AWLMGLK 898 AW GLK Sbjct: 580 AWKAGLK 586 >gi|25010892|ref|NP_735287.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae NEM316] gi|23095271|emb|CAD46481.1| Unknown [Streptococcus agalactiae NEM316] Length = 719 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 167/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++ F F+ ++ Y +Y L N + ++ RV EK A + Sbjct: 87 FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEKLATDLALE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + N LFSP + + + +I + Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K KI+A L ++ + E+G+P+I D N +P G + SNL Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPID--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+T R L Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D N + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745 + + S +A+ER + F+ S + G + + G D++ ++ +P Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 E +Q E I + Y + + IP + +A+++D +I+ + Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|77408851|ref|ZP_00785578.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] gi|77172537|gb|EAO75679.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] Length = 719 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 168/662 (25%), Positives = 287/662 (43%), Gaps = 76/662 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++ F F+ ++ Y +Y L N + ++ RV E+ A + Sbjct: 87 FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + N LFSP + + + +I + Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K KI+A L ++ + E+G+P+I D N +P G + SNL Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+T R L Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D N + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRL----- 744 + + S +A+ER + F+ S + G + + G D++ T+ Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFTNHFIPEAK 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 E +Q E I + Y + + IP + +A+++D +I+ + Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + +DQ S+ L+L + + + L + A+ G+K+ YY+R+ + S Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRTFTDDS 706 Query: 911 VE 912 E Sbjct: 707 SE 708 >gi|146318861|ref|YP_001198573.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus suis 05ZYH33] gi|146321069|ref|YP_001200780.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus suis 98HAH33] gi|253751942|ref|YP_003025083.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis SC84] gi|253753765|ref|YP_003026906.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis P1/7] gi|253755357|ref|YP_003028497.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis BM407] gi|145689667|gb|ABP90173.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis 05ZYH33] gi|145691875|gb|ABP92380.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis 98HAH33] gi|251816231|emb|CAZ51858.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis SC84] gi|251817821|emb|CAZ55574.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis BM407] gi|251820011|emb|CAR46181.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis P1/7] gi|292558518|gb|ADE31519.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus suis GZ1] gi|319758304|gb|ADV70246.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus suis JS14] Length = 719 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 170/659 (25%), Positives = 288/659 (43%), Gaps = 86/659 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E+ A+ N + Sbjct: 88 DQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGDEELALNLANEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPRIRK-TKIKARDLETEISKLQQESGYPYVINIDTANRSNPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI LN S E ++ CNLGS N++ + F ++RT R L Sbjct: 383 SEILQVQTPSILNDSQEYLSMGTDVSCNLGSTNIVNLMKSPDF-----GRSVRTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + + N +IGLG MG S L I Y S AVE + +++ Sbjct: 438 YVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNY 497 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAMNR 740 + S +A+ER A + +F S + G + D + L E + Sbjct: 498 WTLVESNNIARERKATFHNFDKSKYADGTYFDKYVTGDYQPQSDRVKELFE-----GIFI 552 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 S W EL+++V G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 553 PSGQDWAELREKVMADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------- 601 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 E +Q E I + Y + E IP + +A+++D +I+ Sbjct: 602 --------EERQ-----EKKIGKIYYPAAGL-TTETIP-----FYKSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|84516707|ref|ZP_01004066.1| ribonucleoside-diphosphate reductase, putative [Loktanella vestfoldensis SKA53] gi|84509743|gb|EAQ06201.1| ribonucleoside-diphosphate reductase, putative [Loktanella vestfoldensis SKA53] Length = 769 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 163/611 (26%), Positives = 268/611 (43%), Gaps = 93/611 (15%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I++ + + R+A LA E + + +FY+ L+ F ++ + +GT Sbjct: 19 FKQADGTPIDISVEDTWHRIAKSLAAVEADPQAWEPKFYDALADFKYLPAGRITAGAGTA 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGASVLGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H D+E F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMAVMRCDHPDIEAFITAKS----DAARLRMFNMS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 I D FM V W L ++ Q V++ + A Sbjct: 195 VLITDPFMAAVKAGGDWDLL----------------------FDGQ-------VYKTLKA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW ++ ++ P + F D N + + + ++N C E L C L Sbjct: 226 RDLWDTIMQSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSIN+ A ++ F D + L + TAVR++DNV+D + + + R I Sbjct: 282 GSINM-ARLVSDPFSDSAKLDANALTDLVATAVRMMDNVVDASRFPLPAQQHEAMNKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL ++ + Y S EA D M I+ A ASV+LA+E+GA+ F Sbjct: 341 GLGVTGLADALLMVGLRYGSEEAAAQTDAWMHAIARAAYLASVDLAKEKGAFPLF----- 395 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 D+ LA AM + D++++ ++T G+RN+ +IAPT TI+ Sbjct: 396 -------DADKYLASG----AMQQMD----DDVREAIRTHGIRNALLTSIAPTGTISLYA 440 Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN 833 G VS I+P + Y + + D T +V+ Q RDL +A + D + ++ Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGTKTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLAP 500 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892 ++ + ++ A A QKWID + S + E S +Y A Sbjct: 501 LDHV-----RMQAAA---------------QKWIDSSISKTINCPEDISFDAFKEVYMAA 540 Query: 893 WLMGLK--TTY 901 W G K TTY Sbjct: 541 WDQGCKGCTTY 551 >gi|306829460|ref|ZP_07462650.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC 6249] gi|304428546|gb|EFM31636.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC 6249] Length = 719 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 173/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y S E+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + R +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFRDVFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELREKVQANGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + + IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|83952673|ref|ZP_00961403.1| ribonucleoside-diphosphate reductase, putative [Roseovarius nubinhibens ISM] gi|83835808|gb|EAP75107.1| ribonucleoside-diphosphate reductase, putative [Roseovarius nubinhibens ISM] Length = 820 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 165/629 (26%), Positives = 265/629 (42%), Gaps = 106/629 (16%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E F+ L F ++ + +GT R L +CF + TVPDD+ Sbjct: 23 RIARALAQAEKTPADWEGRFFEALEDFKYLPAGRITAGAGTGRSVTLFNCFVMGTVPDDM 82 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 83 GGIFDMLREAALTMQQGGGIGYDFSTIRPRGADVKGVGADASGPLSFMDVWDAMCRTIMS 142 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V + W Sbjct: 143 AGSRRGAMMATMRCDHPDIEQFIAAKS----DPARLRMFNLSVLVTDPFMEAVRADGSWD 198 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L + KV+R I A LW ++ ++ P Sbjct: 199 LIF-----------------------------DGKVYRTIQARDLWNTIMQATYDYAEPG 229 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + F D N ++ +V + ++N C E L C LGSIN+ A+ Sbjct: 230 VIFIDRINAQNNLNYVETIAATNPCGEQPL----PPYGACLLGSINMARLVADPFSEAAH 285 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L + TAVR++DNV+DI+ + + R IGLG+ G AL ++ + Y Sbjct: 286 LDEGALNDLVETAVRMMDNVVDISRFPLPAQEAEAQNKRRIGLGVTGLADALAMVGLRYG 345 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 SPEA E M I+ + +AS LA E+GA+ + + + P+ L AE R Sbjct: 346 SPEAAEQTGVWMARIANASYAASARLAGEKGAFPLYDAKAYAKA--PMIK-KLDAETRAL 402 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 +A + G+RN+ ++APT TI+ G VS I+P + N Y + Sbjct: 403 IAEH-----------------GLRNALLTSVAPTGTISLYAGNVSSGIEPIFANSYTRKV 445 Query: 795 MSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + D + +V+ Q RD+ +A + + + ++ P D ++ A A Sbjct: 446 LQKDGSRTEEEVVDYAVQMWRDVKGDAPLPEYFVNAQTLS-----PADHVRMQAAA---- 496 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY---- 901 Q W+D + S + E +DF +Y QAW G K TTY Sbjct: 497 -----------QDWVDSSISKTINCPE----DIDFEAFKDVYMQAWDTGCKGCTTYRPND 541 Query: 902 ----YLRSRSATSVEKSTLKGVDGKLNAV 926 L + + +T K GKL A+ Sbjct: 542 VTGSVLSVEAPANATAATGKDFRGKLEAL 570 >gi|289551412|ref|YP_003472316.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315658920|ref|ZP_07911787.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis M23590] gi|289180943|gb|ADC88188.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315496044|gb|EFU84372.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis M23590] Length = 701 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 154/603 (25%), Positives = 271/603 (44%), Gaps = 67/603 (11%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLD 316 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 + ++ + A+ IK +K A + + ++G+P++ FKD N ++ Sbjct: 317 DIDLEQYYDDMVANPNIIK--KKKDAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSNI 374 Query: 577 GVVHSSNLCTEITLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKL 621 G + SNLCTEI +ET++ CNLGS+N++ N + K Sbjct: 375 GQIKMSNLCTEIF---QLQETSIINDYGIDDEIKRDISCNLGSLNIV-----NVMETGKF 426 Query: 622 ASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 ++ T + L V D N +K+N ++GLG+M I Y S EA Sbjct: 427 RDSVFTGMDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYFAKNKIGYESEEAK 486 Query: 681 EIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRD 734 + A+ ++++++ S+++A+ERG Y F+ S + G + D A+V+ Sbjct: 487 DFANVFFMMMNYYSLERSMQIAKERGQVYQDFEQSDYANGKYFSFYTAQDITPRFAKVQQ 546 Query: 735 EL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + W L+++V+ G+ ++ +AIAPT +I+ + + S+ P Sbjct: 547 LFEGIEIPTAEDWKALQQQVEAHGLYHAYRLAIAPTQSISYVQNATSSVMP--------- 597 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +V+++++R + + + + + + +AF D Sbjct: 598 ------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFNTDQ 635 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 M LI+ + Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ SVE Sbjct: 636 MKLIDLIATIQTHIDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK-LLSVE 694 Query: 913 KST 915 + T Sbjct: 695 ECT 697 >gi|34496901|ref|NP_901116.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC 12472] gi|34102757|gb|AAQ59121.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC 12472] Length = 950 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 156/554 (28%), Positives = 257/554 (46%), Gaps = 80/554 (14%) Query: 368 LSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L +CF+ V D + GI+ AL + A + GG+G +++ +R GA + GTN + Sbjct: 82 LINCFVQPVGDSVSETEHGKVGIYQALLQAAETMRRGGGVGYNFSRIRPRGARVKGTNSR 141 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + +++V + + V G R+GA L+ H DVE+F+ K+ GD R + N Sbjct: 142 ASGPVSYMRVFDRSCETVESAGARRGAQMGVLDVSHPDVEDFIHA-KDQGDLR----NFN 196 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D FM+ V +A W L V + D + F R+AD + V+R + Sbjct: 197 ISVGVSDDFMRAVEADADWQLTH--AVEPMSDAFPDSF--------RRAD--GLWVYRTV 244 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWR+++ ++ P + F N + + V+ S+N C E L + C Sbjct: 245 RARDLWRQIMESTYDHAEPGVLFMTRINQDNNLSYCEVIESTNPCGEQPL----PDYGCC 300 Query: 601 NLGSINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +LGS+NL H F + FD+ +R +VR+LDNV+D+ + + ++ R Sbjct: 301 DLGSVNLTRHVRAPFGDKAHFDFKSFEKVVRMSVRMLDNVLDLTVWPLPEQQREAMNKRR 360 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG G AL +L I Y S E A E + A ASV+LA E+GA+ F Sbjct: 361 VGLGFTGLGDALIMLKIRYDSEEGRRFAARISESMRDAAYDASVDLAIEKGAFPLF---- 416 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 D+ LA A + SRLP +++ R++ G+RNS+ ++IAPT TI A Sbjct: 417 --------DAEKYLA------APHCASRLP-AKIQARIRKHGIRNSHLLSIAPTGTISLA 461 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI-- 831 S I+P + Y + D NS E ++ D Y + Sbjct: 462 FADNASNGIEPPFSWFYTRKKRMAD----NS-----------QQEYLVEDHAYRVWRMQG 506 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIY 889 G+ ++PD +A E+ + + + ++D A +++N+ D P + + +Y Sbjct: 507 GDTAKLPD----YFVSALEMSALDHMRMVAAVAPYVDTAISKTVNVPADYPF-EDFESLY 561 Query: 890 RQAWLMGLK--TTY 901 +AW GLK TTY Sbjct: 562 LEAWRNGLKGITTY 575 >gi|257885401|ref|ZP_05665054.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257821257|gb|EEV48387.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] Length = 719 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPA 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|293570829|ref|ZP_06681876.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] gi|291609097|gb|EFF38372.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] Length = 719 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|320546424|ref|ZP_08040739.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus equinus ATCC 9812] gi|320448809|gb|EFW89537.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus equinus ATCC 9812] Length = 719 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 266/590 (45%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R + SCFL ++ DD+ I ++ L++ GG+G + + +R Sbjct: 151 YQPATPSFLNAGRSRRGEFVSCFLISMTDDMNSIGRSINSALQLSRIGGGVGINLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL +K Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDILAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELTRNNEDMYLFSPFSVEREYGVPYSYVDITAEYDNMVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + +K KI A L ++ + E+G+P++ D N +P G + SNLC+E+ Sbjct: 331 NPNIVKT--KIKARDLETEISKLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E T + CNLGS N++ + F +I+ R L V D Sbjct: 387 QVQTPSVINDAQEFTKMGTDISCNLGSTNIVNMMTSPDF-----GRSIKAMTRALTFVSD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + ++ K N GLG MG + L HI Y SPE++E + +++ + Sbjct: 442 TSSIESVPTIKHGNEQAHTFGLGAMGLHTFLAQNHIQYGSPESIEFTNIYFMLLNYWTLV 501 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDEL 749 S ++A+ER + F+ S + G + D + V++ A + S W EL Sbjct: 502 ESNKIARERKQTFVGFEKSSYADGSYFDKYITDDYVPKSDRVKELFAKHFIPSGKDWLEL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V G+ + N +A+AP +I+ I VS S+ P Q + E Sbjct: 562 RDAVMRDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + E IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L D P G + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|325690075|gb|EGD32079.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK115] Length = 719 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ERG + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL +VK G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELCDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|48696468|ref|YP_024510.1| putative ribonucleotide reductase large subunit [Staphylococcus phage K] gi|37729162|gb|AAO47529.1| ORF80 [Staphylococcus phage K] gi|119658117|gb|ABL87152.1| putative ribonucleotide reductase large subunit [Staphylococcus phage 812] gi|182627941|gb|ACB89103.1| gp ORF110 [Staphylococcus phage A5W] Length = 704 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 166/590 (28%), Positives = 261/590 (44%), Gaps = 62/590 (10%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F STPT NSG +LSSC+L V D + + A + GG+ D T +R Sbjct: 149 FQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNGGGVAIDLTRIRP 208 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA + S+GVI F K +QGG R+G+ YL +H D+ + L +K Sbjct: 209 KGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHNDILDLLSSKKIN 268 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 + R ++ IP+ FM+ V + + F +++ ++ Y E I E Y++ Sbjct: 269 ASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDINKMYGKYLDELNID-EWYDKLL 327 Query: 530 DRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + I KV K A + + E+G+P++ + D N P +++G V SNLCTEI Sbjct: 328 NNDSIGKV--KHDAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKNLGKVKMSNLCTEI 385 Query: 589 T-LNSSSE-------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + L SE VC LGS+NL+ N + L ++ R L Sbjct: 386 SQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLV-----NVVEKGLLNESVDIGTRALTK 440 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V DI + + +K+N RAIGLG M L I Y S EA+++ + I+F Sbjct: 441 VTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREALDLVNSLYSAINFQ 500 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PW 746 +I S+ +A+E G + F+ S + G + + I + + + A ++ W Sbjct: 501 SIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKKVLDKVYIPTQDDW 560 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 DEL K VK G+ N A APT +I+ + + SI P + Sbjct: 561 DELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMP---------------------V 599 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + ++ R D + Y + I + + TA++ID +I +++ QK Sbjct: 600 PSAIENRQYGDMETYYPMPY----LSPITQFFYE----GETAYKIDNKRIINTSAVVQKH 651 Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 DQA S LY++ E KL +Y AW GLK+ YY RSR + +E T Sbjct: 652 TDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIECET 701 >gi|73663295|ref|YP_302076.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495810|dbj|BAE19131.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 701 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 178/692 (25%), Positives = 298/692 (43%), Gaps = 74/692 (10%) Query: 255 YFCRYIEEGVKARLLHESMMDFDLV--YLANDLK----YERDFAFE---YLGLQILYDRY 305 YF IE + R L ++ FDL Y DL+ Y + FE Y+ + Y Sbjct: 49 YFDTEIE---RLRYLVDNDFYFDLFAKYSEADLQEITDYAKSIPFEFASYMSASKFFKDY 105 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TR 364 L NG + + + + VA+ + A +F + + + +TPT N+G R Sbjct: 106 ALKTNG-KSQYLEDYKQHVAIVALYLANGHKATAKQFISAMVEQRYQPATPTFLNAGRAR 164 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 +L SCFL D L I L+K GG+ + + +R G I G G ++GV Sbjct: 165 RGELVSCFLLEADDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGV 224 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +P K +Q G+R GA YL +H DVEEFLD +K D+ R ++T Sbjct: 225 LPVAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLI 284 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 +P F + + +F+P + + L + + E Y+ I +K A Sbjct: 285 VPSKFFDLAKEGKDFHMFAPHTIYKEYGLTLDDINLD-EYYDELVANPNIDK-KKKDARE 342 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEET 597 + + ++G+P++ FKD N +G + SNLCTEI +N E Sbjct: 343 MLNTIAQTQLQSGYPYLMFKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTED 402 Query: 598 AV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNH 651 + CNLGS+N++ N + K ++ T + L V D + +K+N Sbjct: 403 EIKRDISCNLGSLNIV-----NVMESGKFKDSVHTGMDALTVVSDEADIQNAPGVRKANR 457 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710 ++GLG+M L I Y S EA + A+ +++++I S+E+A+ER Y Sbjct: 458 ELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMLNYYSIERSMEIAKERQEVYKD 517 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCM 764 F+ S + G + E + E L W L+++V+T G+ ++ + Sbjct: 518 FEQSDYANGKYFEFYTSQTFEPKYEKVRKLFDGLEIPTPEDWKALQEQVETNGLFHAYRL 577 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPT +I+ + + S+ P +V+++++R + + Sbjct: 578 AIAPTQSISYVQNATSSVMP---------------------IVDQIERRTYGNAETFYPM 616 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + + + + +AF D M LI+ S Q IDQ S LY++ E S + Sbjct: 617 PF----------LSPETMWYYKSAFNTDQMKLIDLISTIQTHIDQGISTILYVNSEISTR 666 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 +L +Y A GLK+ YY R++ SVE+ T Sbjct: 667 ELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697 >gi|293553989|ref|ZP_06674591.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] gi|291601846|gb|EFF32096.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] Length = 719 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|257899643|ref|ZP_05679296.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|257837555|gb|EEV62629.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] Length = 719 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGKSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|196046537|ref|ZP_03113762.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Bacillus cereus 03BB108] gi|225863314|ref|YP_002748692.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus 03BB102] gi|228914022|ref|ZP_04077644.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229183643|ref|ZP_04310866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BGSC 6E1] gi|196022721|gb|EDX61403.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Bacillus cereus 03BB108] gi|225789936|gb|ACO30153.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus 03BB102] gi|228599886|gb|EEK57483.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BGSC 6E1] gi|228845627|gb|EEM90656.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 563 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 142/508 (27%), Positives = 248/508 (48%), Gaps = 35/508 (6%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-M 738 +++++I S+E+A+E+G + F S + G + ID + +V+ A + Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765 + ++ W++LK++V G+ N+ C A Sbjct: 533 HIPTKEDWNQLKRQVMEHGLYNALTCSA 560 >gi|118476920|ref|YP_894071.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus thuringiensis str. Al Hakam] gi|118416145|gb|ABK84564.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Bacillus thuringiensis str. Al Hakam] Length = 575 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 142/508 (27%), Positives = 248/508 (48%), Gaps = 35/508 (6%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-M 738 +++++I S+E+A+E+G + F S + G + ID + +V+ A + Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765 + ++ W++LK++V G+ N+ C A Sbjct: 545 HIPTKEDWNQLKRQVMEHGLYNALTCSA 572 >gi|324990558|gb|EGC22494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK353] Length = 719 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 163/590 (27%), Positives = 259/590 (43%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD F + +N LFSP V + + +I + E A Sbjct: 271 ADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 331 NPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCSEIL 386 Query: 589 ------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 LN + E CNLGS N++ + F +IRT R L V D Sbjct: 387 QVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTFVTD 441 Query: 638 INCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + T + N GLG MG S L I Y S EAVE +++ + Sbjct: 442 SSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWTLV 501 Query: 697 ASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPWDEL 749 S +A+ERG + +F+ S + G F G D + + S W EL Sbjct: 502 ESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDWAEL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + ++K G+ + N +A+AP +I+ I VS SI P Q + E Sbjct: 562 RDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + E IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|319954719|ref|YP_004165986.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga algicola DSM 14237] gi|319423379|gb|ADV50488.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga algicola DSM 14237] Length = 595 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 160/597 (26%), Positives = 254/597 (42%), Gaps = 130/597 (21%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +FY +S ++ ++P N G SCF + + DD+ I E M++K GG Sbjct: 85 KFYGYMSDGYYSLASPVWSNFGKERGLPISCFGSHIDDDMGNILYTQSEVGMMSKMGGGT 144 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA + NG++ G + +++ V+QG R+G YL H D+ Sbjct: 145 SGYFGKIRHRGAEVK-NNGQASGAVHIMQLFESMVDVVSQGSVRRGRFSPYLPVEHPDIS 203 Query: 461 EFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFL++ + TH + N W+ ++ D SD Sbjct: 204 EFLEIGTEGNPIQELTHGVTVTNEWMQEMI---------------DGDSDKR-------- 240 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN-----IRSPQQ 574 A+W K+L E G+P+I FKD N + Sbjct: 241 ------------------------AIWAKVLQRRGEMGYPYIFFKDNANNGAADVYKDNN 276 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632 H +++SNLCTEI L S+ + VC L SIN++ YDK T + T V L Sbjct: 277 HT--IYASNLCTEIMLPSNDNWSFVCVLSSINVM--------HYDKWKDTDAVETMVYFL 326 Query: 633 DNVIDINCHTIEKAKKSNH------------------THRAIGLGLMGFQSALHLLHIPY 674 D VI +E + S+ +RA+GLG++G+ S L +P+ Sbjct: 327 DAVITEFLDKLEVYRDSDRREDRQTFLFMERAYNFAKDNRALGLGVLGWHSLLQSEMLPF 386 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S +A ++ +E I + AS ELA + G + KG Sbjct: 387 NSQKAYDLNNEIFRTIKSKSYKASEELASKFGEPAVLKG--------------------- 425 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 G RN+ A+APT + A I G VSQ I+P + N+YVK Sbjct: 426 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKD 464 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 T+ N FLV+ L+++ + ++ DGS+ +++ + D K++ T EID Sbjct: 465 IAKIKTTIKNPFLVDLLEEKGQNITEVWHSIRERDGSVQHLDFLSDLEKEVFKTYSEIDQ 524 Query: 854 MWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + +I A+ RQ IDQ QS+N+ + D P K+++ I+ AW +GLK+ YY S +A Sbjct: 525 LDIIYQAANRQNHIDQGQSVNIIVHPDMPV-KEINKIHVTAWKLGLKSLYYQHSMNA 580 >gi|83594588|ref|YP_428340.1| ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC 11170] gi|83577502|gb|ABC24053.1| Ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC 11170] Length = 786 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 163/615 (26%), Positives = 272/615 (44%), Gaps = 83/615 (13%) Query: 310 NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQ 367 +GS +E P+ F RV G+ ++ + + + + +GT R Sbjct: 21 DGSSLEQGPEDSFARVCRGIYARDPRRAVHEPLALEAMKALEWCPGGRIHAGAGTDRRVT 80 Query: 368 LSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +CF+ VPD + GI AL A+ + GG+G D++ +R GA + T S G + Sbjct: 81 LINCFVNMIVPDRMDGIMEALTRAALTMQQGGGIGTDFSTLRPRGAKVRRTGSVSSGPLS 140 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 F+++ + + GG R+GA+ + H D+ F+ + G R + N + + Sbjct: 141 FMEIWHAMCGTIMSGGARRGAMMGTMICDHPDLPAFITAKAQAG----RLTNFNVSVLVT 196 Query: 487 DLFMKRVTQNAGWTL-FS--PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 D FM+ V ++A W L FS P + + L + + E Y V+ ++SA Sbjct: 197 DAFMRAVDEDATWDLGFSVPPADPARLVAVTERNGEPWY-------------VYERLSAR 243 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 ALW K++ ++ P + F D N R+ + + +N C E L + + CNLG Sbjct: 244 ALWEKIIRTTYDHAEPGVIFIDRVNERNNLAYCETISCTNPCGEQPLPPNGD----CNLG 299 Query: 604 SINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 +NL + +FD +LA VR LDNV+D++ +E K R +GL Sbjct: 300 CVNLAVLVRDPFTPQARFDDARLAEVAAIGVRFLDNVLDVSNFPVEDQAKEAQAKRRLGL 359 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+MG +AL +L + Y SP A+ M + A AS ELA ERG + L+D Sbjct: 360 GIMGLGNALQMLGLRYGSPAAIAETRRIMALLRDAAYRASAELAGERGPF-----PLYD- 413 Query: 719 GVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA-NIC 776 RD+ LA LP D+L+ ++ G+RN + IAPT T A Sbjct: 414 --------------RDQLLARPFIQELP-DDLRAKIAEQGLRNGVMLTIAPTGTTAIYYN 458 Query: 777 GVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 VS ++P++ Y + + D F V+++ + + R L D + Sbjct: 459 NVSSGLEPTFGWRYFRKVLRPDGGHDEFAVIDAGFESWCRTRGL------------DPAT 506 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FI 888 + +PD + TA E+ + + Q++ID S++ ++ P+ D + Sbjct: 507 APLTGLPDSM----VTALELSVEDHLRMQAACQEFID--ASISKTINCPADMSYDSFAAV 560 Query: 889 YRQAWLMGLK--TTY 901 Y+ A+ MG K TTY Sbjct: 561 YKLAYEMGCKGCTTY 575 >gi|319744838|gb|EFV97176.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae ATCC 13813] Length = 719 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 166/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++ F F+ ++ Y +Y L N + ++ RV E+ A + Sbjct: 87 FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFANGDEELATDLALE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + N LFSP + + + +I + Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K KI+A L ++ + E+G+P+I D N +P G + SNL Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+T R L Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D N + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745 + + S +A+ER + F+ S + G + + G D++ ++ +P Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 E +Q E I + Y + + IP + +A+++D +I+ + Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|76787476|ref|YP_329565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae A909] gi|76562533|gb|ABA45117.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus agalactiae A909] Length = 719 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 166/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++ F F+ ++ Y +Y L N + ++ RV E+ A + Sbjct: 87 FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + N LFSP + + + +I + Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K KI+A L ++ + E+G+P+I D N +P G + SNL Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+T R L Sbjct: 382 CSEILQVQKPSLINDTQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D N + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745 + + S +A+ER + F+ S + G + + G D++ ++ +P Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 E +Q E I + Y + + IP + +A+++D +I+ + Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|38638229|ref|NP_944412.1| ribonucleotide reductase subunit 1 [Psittacid herpesvirus 1] gi|81987372|sp|Q6UDJ2|RIR1_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=Ribonucleotide reductase large subunit gi|34500235|gb|AAQ73718.1| ICP6 [Psittacid herpesvirus 1] Length = 811 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 175/673 (26%), Positives = 276/673 (41%), Gaps = 85/673 (12%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY- 343 L+ R F YLG + R+E FF+R+A A + A + Sbjct: 154 LQSARKFESMYLG----------KLKNGRLESVGQFFLRIAAEAARGVANNDAFAAAVFR 203 Query: 344 --------NLLSSFHFMC--------STPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGA 386 N + FM TP + +GT +SCFL V + + Sbjct: 204 DGTRAPDANTVFCLFFMALCRQEIVPPTPVMLFAGTESRSYASCFLLDVRGRHTRDVLTS 263 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG---KSQGVIPFLKVANDTAVAVNQGGK 443 + E + +S G G+G ++ + S G++ LK + A N Sbjct: 264 IAEEIIPVMHSHG---------GIGLYMDCDSNWDDNSSGMMLALKALDSIIAASNAVSA 314 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R +C Y+E WH D+ + L R G++ R + A W+PDLFMKR N WTLF Sbjct: 315 RPSGLCVYVEPWHRDIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLF 374 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + L DLYG+EFE YE ER+ + G + AL + ++ TG P++ Sbjct: 375 D-GRAAHLSDLYGEEFEKEYELLERK-NVGIATYPARDVMFALIKSAVS----TGTPFVM 428 Query: 563 FKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------ 615 FK N G + SNLCTEI + E VCNL S+NL A Sbjct: 429 FKHAVNRNYFFDMAGRAMKCSNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPGTP 488 Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 FDY A ++ ++ ++ I++A N R+IG+G+ GF +A L Sbjct: 489 PIGTFDYSSFRDACAVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLLQG 548 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLA 730 S EA + E ++ S + + + F S + +G +D Sbjct: 549 FGLDSVEACRFNGKLFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPARH 608 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 D WD L++ +K G+ N +A+ PTA+ + + VS+ I P + N++ Sbjct: 609 LYFDG----------WDRLRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIF 658 Query: 791 VKSNMSGDFTVVNSFLV--------NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 K +G+ +N L+ N+ ++RD+ E + + G+ G L Sbjct: 659 SKITTTGEDIQLNVALMETIECLYPNKAERRDIL-ERLHKNKWSTRGAFGAALPSQHPLT 717 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGL 897 K TAFE D L+ ++ R ++D +QS LY+ E ++ + A+ GL Sbjct: 718 KFD-TAFEADQEHLLRLSADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGL 776 Query: 898 KT-TYYLRSRSAT 909 KT YY + R AT Sbjct: 777 KTGMYYCKVRKAT 789 >gi|69245953|ref|ZP_00603725.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|257880354|ref|ZP_05660007.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257891013|ref|ZP_05670666.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257894266|ref|ZP_05673919.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|258614694|ref|ZP_05712464.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecium DO] gi|260562342|ref|ZP_05832856.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|293563176|ref|ZP_06677634.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1162] gi|293568384|ref|ZP_06679705.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1071] gi|294617335|ref|ZP_06696974.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1679] gi|314939362|ref|ZP_07846603.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a04] gi|314941565|ref|ZP_07848450.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133C] gi|314949608|ref|ZP_07852932.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0082] gi|314953715|ref|ZP_07856590.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133A] gi|314992171|ref|ZP_07857615.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133B] gi|314997662|ref|ZP_07862592.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a01] gi|68195483|gb|EAN09927.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|257814582|gb|EEV43340.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257827373|gb|EEV53999.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257830645|gb|EEV57252.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|260073266|gb|EEW61607.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|291588905|gb|EFF20732.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1071] gi|291596408|gb|EFF27662.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1679] gi|291604867|gb|EFF34343.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1162] gi|313588297|gb|EFR67142.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a01] gi|313593274|gb|EFR72119.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133B] gi|313594299|gb|EFR73144.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133A] gi|313599624|gb|EFR78467.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133C] gi|313641347|gb|EFS05927.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a04] gi|313644032|gb|EFS08612.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0082] Length = 719 Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 291/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|703072|gb|AAA80556.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2] Length = 820 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 177/663 (26%), Positives = 283/663 (42%), Gaps = 79/663 (11%) Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN-------LL 346 LGLQ + Y+ Y + + G + E FF+R+A A + ++ N Sbjct: 172 LGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKPLIASLTNGSANWRTAF 231 Query: 347 SSFH-------FMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAK 395 +SF F+ STP + G +SC+L TT D + +LA+ Sbjct: 232 TSFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQDTIKVITNDVVPHLLAR 291 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 G+G + N KS G++ LK+ + VA N R VC YLE W Sbjct: 292 ------------GGIGISLQHVNQKS-GLMHVLKLIDSLIVATNVNESRPTGVCVYLEPW 338 Query: 456 HIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVS 508 H D+ L +R ++ RR ++ A W DL KR +N WTLF S Sbjct: 339 HSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNGEKNVMWTLFD-SRAS 397 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L LYG +FE+ YE E++ I V +I + ++ TG P+I FKD CN Sbjct: 398 ILSKLYGDKFEVEYERLEKEG----IGV-AQIPIRDMMFAIIKSAASTGSPFILFKDACN 452 Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK----LAS 623 G + SNLCTEI ++ VC L SINL + + L Sbjct: 453 RHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVRRVNVNVNSILMPLGM 512 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 R A + ++D + K++ +R+IG+G+ GF +A+ L + + Sbjct: 513 PFRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAMLSLGLDLEDGAVRALN 572 Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E + A++ S E ERG + F S + QG D ++ T Sbjct: 573 KQIFELMLLEAMTVSCEFC-ERGLPPFPDFSDSYYAQGRLHFDGWD---------SVELT 622 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + W L+ R+ + G+ N+ +A+ PTA A + VS+ P + N++ K +G+ Sbjct: 623 APEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFSNMFSKVTSAGELLR 682 Query: 802 VNSFLVNELKQ--------RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NS L+ +++Q R A+ S ++G+ LK + TAFE D Sbjct: 683 PNSQLMRDVRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTRLLK--YKTAFEYDQ 740 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRS 907 LI+ + R ++DQ+QS+ L++ E + ++ + A+ GLKT YY + R Sbjct: 741 SLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAGLKTGMYYCKIRK 800 Query: 908 ATS 910 AT+ Sbjct: 801 ATN 803 >gi|22536983|ref|NP_687834.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae 2603V/R] gi|77405563|ref|ZP_00782654.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] gi|77410694|ref|ZP_00787053.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] gi|22533838|gb|AAM99706.1|AE014229_7 ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 2603V/R] gi|77163230|gb|EAO74182.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] gi|77175870|gb|EAO78648.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] Length = 719 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 166/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++ F F+ ++ Y +Y L N + ++ RV E+ A + Sbjct: 87 FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + N LFSP + + + +I + Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K KI+A L ++ + E+G+P+I D N +P G + SNL Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+T R L Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D N + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745 + + S +A+ER + F+ S + G + + G D++ ++ +P Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 E +Q E I + Y + + IP + +A+++D +I+ + Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|294623133|ref|ZP_06702019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium U0317] gi|291597502|gb|EFF28667.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium U0317] Length = 719 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 291/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAM 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|157692409|ref|YP_001486871.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pumilus SAFR-032] gi|157681167|gb|ABV62311.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus pumilus SAFR-032] Length = 700 Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 166/670 (24%), Positives = 293/670 (43%), Gaps = 81/670 (12%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 L SM D V+ A Y + F F ++ Y+ Y L N + ++ + + R+++ Sbjct: 69 LRQYSMADIKEVFEA---AYAKKFRFPSFMSAFKFYNDYALKTNDKK-KILERYEDRISV 124 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFG 385 + +A+EF L+ + + STPT N+G R +L SCFL V D L I Sbjct: 125 VALFFAGGDKAKALEFVELMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISR 184 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+ + L+K GG+ + + +R G I ++GV+ +K+ ++ +Q G+R+ Sbjct: 185 AIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQ 244 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 G+ AYL +H D+ +FLD +K + D+ R ++ IPD F++ ++ F P Sbjct: 245 GSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIELAREDKTAYTFYPH 304 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 V + + E ++ E Y+ + ++K K++ L K+ + E+G+P+I F+D Sbjct: 305 TVYKEYGQHLDEMDME-EMYDELVENPKVKK-EKVNPRKLLEKLAVLRSESGYPYIMFQD 362 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFAN 613 N H+ V SNLC+E+ S A CNLGS+N++ N Sbjct: 363 NVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGLDISCNLGSLNIMNVMKN 422 Query: 614 NQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + T++ A L V + + +K+N ++IGLG M L + Sbjct: 423 KS-----IEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGAMNLHGYLAQNQM 477 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAE 731 Y S EA + A+ +++++I S ELA+E+G + ++GS + G + + Sbjct: 478 AYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATGEYFNKYVENDFT 537 Query: 732 VRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP- 784 + E A M+ ++ W LK V GM +S + IAPT +I+ + + S+ P Sbjct: 538 PKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSISYVQSATASVMPI 597 Query: 785 -------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 +Y N M G + N F E Sbjct: 598 MERIEERTYGNSKTYYPMPG-LSAQNWFFYKE---------------------------- 628 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 A+++D +++ + Q+ +DQ S L+L D + + L+ I A G Sbjct: 629 ----------AYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKG 678 Query: 897 LKTTYYLRSR 906 +KT YY R++ Sbjct: 679 IKTLYYARTK 688 >gi|159045489|ref|YP_001534283.1| putative Vitamin B12-dependent ribonucleotide reductase [Dinoroseobacter shibae DFL 12] gi|157913249|gb|ABV94682.1| putative Vitamin B12-dependent ribonucleotide reductase [Dinoroseobacter shibae DFL 12] Length = 765 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 170/642 (26%), Positives = 271/642 (42%), Gaps = 94/642 (14%) Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363 F +G+ I++ + + R+A LA E++ +FY L F F+ + +GT Sbjct: 19 FKEADGTPIDVTVEDSWRRIARALASVESDPAAWEPKFYAALEDFKFLPAGRITAGAGTE 78 Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R L +CF + TVPDD+ GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 79 RSVTLFNCFVMGTVPDDMGGIFEGLKEAALTMQQGGGIGYDFSTIRPKGAAVKGVAADAS 138 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+ V + + G R+GA+ A + H D+E F+ + D R N + Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAKS----DPARLRMFNVS 194 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + W L + KV+ + A Sbjct: 195 VLVTDAFMEAVKADGSWDLVF-----------------------------DGKVYHTVEA 225 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW K++ FE P + F D N + + + ++N C E L C L Sbjct: 226 RDLWNKIMKATFEYAEPGVIFIDRINAANNLSYCETIAATNPCGEQPL----PPYGACLL 281 Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 GSINL + ++ F D L + TAVR++DNV+D + +E R I Sbjct: 282 GSINL-SRLISDPFGEGAALDEAALEELVATAVRMMDNVVDASRFPLEAQAAEARAKRRI 340 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G AL ++ + Y S A + + I+ A ASV+LA E+GA+ F+ + Sbjct: 341 GLGVTGLADALLMVGLRYGSEAAARQTERWLHRIARAAYLASVQLATEKGAFPLFEADAY 400 Query: 717 DQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 Q G + A+VR +A + G+RN+ +IAPT TI+ Sbjct: 401 LQSGTMQT----MDADVRAAIAEH-----------------GIRNALLTSIAPTGTISLY 439 Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 G VS I+P + Y + + D + +V+ Q LW E K+ D Sbjct: 440 AGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVDYAVQ--LWRE------KFGDA----- 486 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893 DL A + P+ + + QKW+D + S + E S + +Y AW Sbjct: 487 -----DLPDHFVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDISFAEFKDVYMAAW 541 Query: 894 LMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAV-PVTD 930 G K R + T SV S K + + V PV++ Sbjct: 542 DQGCKGCTTYRPNAVTGSVLSVSDSATKDSEAEKGEVKPVSE 583 >gi|291614699|ref|YP_003524856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sideroxydans lithotrophicus ES-1] gi|291584811|gb|ADE12469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sideroxydans lithotrophicus ES-1] Length = 981 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 166/604 (27%), Positives = 269/604 (44%), Gaps = 77/604 (12%) Query: 323 RVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380 RVA GLA ET E+ + E + L F+ + +G + L +CF+ V D + Sbjct: 69 RVARGLAQAETPEQRAKWEEAFFLAQENGFVPAGRINSAAGLKIQATLINCFVQPVGDAI 128 Query: 381 YG-------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 G I+ ALQ+ A + GG+G D++ +R GAH+ GTN ++ G I +++V + Sbjct: 129 SGTNDGKPGIYDALQQAAETMRRGGGVGYDFSSIRPEGAHVKGTNSRASGPISYMRVFDR 188 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + V G R+GA L H D+E+F+ K+ GD R + N + + D M+ V Sbjct: 189 SCETVESAGARRGAQMGVLRCDHPDIEKFISA-KDQGDLR----NFNISVGVTDALMQAV 243 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ + L E S I R+ D I +RK+ A LW++++ Sbjct: 244 EKDEEFELVHSAEPST---------AIKEAGATRREDGKWI--YRKVRATDLWKQIIAST 292 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + + ++ ++N C E L C LGSI+L N Sbjct: 293 YDHAEPGVLFIDLMNRDNNLSYCEIIEATNPCAEQPL----PPYGCCCLGSIDLTRMVKN 348 Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 FDY+ +R AVR+LDNV+D+ + + ++ R IGLG G AL Sbjct: 349 PFSKHAGFDYEPFKQLVRVAVRMLDNVLDVTAWPLPEQQQEAKNKRRIGLGFTGLGDALV 408 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-IDSIG 727 ++ + Y + A A + + A ASV+LA ERG FP +D+ Sbjct: 409 MMGLRYDTDAARAFASDITRIMRDEAYLASVDLAVERGK-------------FPLLDADK 455 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785 L+ R SRLP DE+K +++ G+RNS+ ++IAPT TI A S I+P+ Sbjct: 456 YLSAPR------FASRLP-DEIKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPA 508 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + D T + V + R + G++ +P Sbjct: 509 FSWFYTRKKRMMDGT-TKDYPVEDHAWRVFKQQG------------GDVSHLPPSF---- 551 Query: 846 ATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 TA EI + ++ + +ID ++++N+ D P D +Y +AW GLK Sbjct: 552 VTALEISAIDHMKMVAAVAPYIDTSISKTVNVPADYPYEDFKD-LYTEAWKAGLKGLATY 610 Query: 904 RSRS 907 R S Sbjct: 611 RPNS 614 >gi|222150733|ref|YP_002559886.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus caseolyticus JCSC5402] gi|222119855|dbj|BAH17190.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus caseolyticus JCSC5402] Length = 701 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 171/667 (25%), Positives = 291/667 (43%), Gaps = 87/667 (13%) Query: 285 LKYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRA 339 +KY +D F Y+ + Y L N + +E + + V++ LA + K K+ Sbjct: 82 IKYAQDIEFNFASYMSASKFFKDYALKTNDKQQYLEDYKEHVIIVSLYLAKGDVNKAKQL 141 Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 + + + + +TPT N+G R +L SCFL V D L I L+K G Sbjct: 142 I---SAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINYIDSTAKQLSKIGG 198 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+ + + +R G I G G ++GV+P K +Q G+R GA YL +H D Sbjct: 199 GVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYD 258 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EFLD +K D+ R ++T +P F + + +F+P V + L + Sbjct: 259 VLEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFFMFAPHTVEREYGLTLDDL 318 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQ 574 I E Y+ I K + R+ML ++ +T G+P++ FKD N Sbjct: 319 NID-EMYDELVANPNIMKKSKDA-----REMLNLIAQTQLQSGYPYLMFKDNANKVHANS 372 Query: 575 HVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLA 622 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 373 NIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIV-----NVMESKKFK 427 Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 ++ T + L V D + K+N ++GLG+M L I Y S EA E Sbjct: 428 DSVHTGMDALTTVSDEADIKNAPGVAKANRELHSVGLGVMNLHGYLAKNQIGYESEEAKE 487 Query: 682 IADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLL 729 A ++F+++ S+E+A ER ++ F+ S + G + D + L Sbjct: 488 FAATFFMMLNFYSLQRSMEIAMERNETFADFEKSDYASGKYFDKYVATDFRPKSDKVTAL 547 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 E ++ S W +LK +V G+ ++ +AIAPT +I+ + + S+ P Sbjct: 548 FE-----GIDMPSPEDWADLKDKVMKNGLFHAYRLAIAPTQSISYVQNATSSVMP----- 597 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +V+++++R + + + + + + +AF Sbjct: 598 ----------------IVDQIERRTYGNAETFYPMPF----------LSPETMWFYKSAF 631 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 D M LI+ + Q+ IDQ S L+++ + S ++L +Y A GLK+ YY R++ Sbjct: 632 NTDQMKLIDLIATIQEHIDQGISTILFVNSDISTRELARLYVYAHHKGLKSLYYTRNK-L 690 Query: 909 TSVEKST 915 SVE+ T Sbjct: 691 LSVEECT 697 >gi|28377562|ref|NP_784454.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum WCFS1] gi|28270394|emb|CAD63297.1| ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus plantarum WCFS1] Length = 721 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 163/674 (24%), Positives = 290/674 (43%), Gaps = 88/674 (13%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DF + D +DF F+ ++ Y +Y L + + + F RVAM Sbjct: 75 DFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFAD 133 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 E A++ + + + +TP+ N+G R +L SCFL DD+ I + Sbjct: 134 GNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQ 193 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L++ GG+G + + +RG G I +G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 194 LSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYL 253 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 +H D+ FL +K D++ R ++ +PD F + + +A LFSP V + Sbjct: 254 SVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYG 313 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 + +I E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 314 VPFSYVDITKE-YDNMVKNPNIRK-TKIKARDLENEISKLQQESGYPYVVNIDTANRENP 371 Query: 573 QQHVGVVHSSNLCTEI------TLNSSSEE------TAVCNLGSINLLAHFANNQFDYDK 620 G + SNLC+E+ +L ++ CNLGS N++ + F Sbjct: 372 ID--GKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF---- 425 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + +K N IGLG MG + + Y S EA Sbjct: 426 -GHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEA 484 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----------PIDSIG 727 V+ + +++ + AS E+A+ER + +F+ S + G + D Sbjct: 485 VDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKYTTQDWQPKYDKTA 544 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L + + ++ W+ LK+ V G+ + N MA+AP +I+ I + S+ P Sbjct: 545 ALFD-----GIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHP--- 596 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 ++N +++R E I + Y + N D + + Sbjct: 597 ------------------IINRVEER---QEKKIGKIYYPAPYLSN------DTINYYKS 629 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQ 891 A++ D +I+ + Q+ +DQ SL L++ D+ + + L+ + Sbjct: 630 AYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNY 689 Query: 892 AWLMGLKTTYYLRS 905 A+ G+K+ YY+R+ Sbjct: 690 AYRKGIKSIYYIRT 703 >gi|254511074|ref|ZP_05123141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacteraceae bacterium KLH11] gi|221534785|gb|EEE37773.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacteraceae bacterium KLH11] Length = 760 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 157/591 (26%), Positives = 252/591 (42%), Gaps = 88/591 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + +FY L F ++ + +GT R L +CF + TVPD + Sbjct: 37 RIARDLARVEDDPAHWEEKFYAALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEQFITAKS----DPARLRMFNMSVLVTDPFMEAVKADGPW- 211 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 E+ ++ KV++ + A LW K++ ++ P Sbjct: 212 ------------------ELVFDG----------KVYQTVQARDLWNKIMQATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + F D N + +V + ++N C E L C LGS+NL A Sbjct: 244 VIFIDRINKANNLSYVETIAATNPCGEQPL----PPYGACLLGSVNLARLVAEPFEDAAH 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L + TAVR++DNV+D + + + + R IGLG+ G AL +L + Y Sbjct: 300 LDEAALQELVATAVRMMDNVVDASKFPLAEQEAEAQDKRRIGLGVTGLADALLMLGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + I+ A ASV+LA+E+GA+ F E Sbjct: 360 SDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFAA---------------------E 398 Query: 736 LAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 + + L DE ++ ++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 399 KYLASGTMLQMDEDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D + +V+ Q +W + +D + D + P D K+ A A Sbjct: 459 VLQKDGSRTEEEVVDYAVQ--MWRDK-FADKELPDYFVNAQTLSPSDHVKMQAAA----- 510 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKWID + S + E S +Y QAW G K TTY Sbjct: 511 ----------QKWIDSSISKTINCPEDISFDAFKDVYMQAWDQGCKGCTTY 551 >gi|83313545|ref|YP_423809.1| ribonucleotide reductase, alpha subunit [Magnetospirillum magneticum AMB-1] gi|82948386|dbj|BAE53250.1| Ribonucleotide reductase, alpha subunit [Magnetospirillum magneticum AMB-1] Length = 781 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 156/596 (26%), Positives = 256/596 (42%), Gaps = 87/596 (14%) Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTT 375 Q + RVA LA E + F+ + F + + + +GT R L +CF + Sbjct: 31 QDTWRRVARSLAAAEADPALWEERFFEAMEDFKLLPAGRIISGAGTDRRVTLFNCFVMGD 90 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 +PDD+ GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 91 IPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMC 150 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + G R+GA+ A + H D+E F+D ++ G R N + + D FM+ V + Sbjct: 151 RTIMSAGSRRGAMMATMRCDHPDIEAFIDAKREAG----RLRMFNLSVLVTDPFMQAVKE 206 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W E+ ++ ++ + A LW K++ + Sbjct: 207 DGPW-------------------ELTFKGV----------TYKSLPARELWNKIMRATYS 237 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 P + F D N + + +H++N C E L + VC LGS+NL A + Sbjct: 238 YAEPGVIFIDRINRLNNLSYCEEIHATNPCGEQPLPA----YGVCLLGSLNL-ARLVDRP 292 Query: 616 F------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 F D D+L +R AVR++DNVID++ + +E+ + R IGLG+ G AL L Sbjct: 293 FEDGARLDLDQLDRLVRVAVRMMDNVIDVSNYPLERHRHEAQAKRRIGLGITGLADALIL 352 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 Y +A+ + + M I A AS ELA+E+GA FP L Sbjct: 353 CGARYGGAQAIRLTETWMAAIRRSAYLASTELAKEKGA-------------FP------L 393 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788 + LA L D ++ ++ G+RN+ +IAPT TI+ VS ++P + Sbjct: 394 YDAEKYLAGETIQSLDSDVIEA-IRANGIRNALLTSIAPTGTISLFADNVSSGLEPVFAF 452 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 Y + + D T E +SD Y E P L A Sbjct: 453 TYTRGVLQKDGTR---------------REEEVSDYAYRLFRRQRGENAP--LPSYFVDA 495 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 + P + + QK++D + S + + E S + +Y+QA+ +G K TTY Sbjct: 496 LSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFESFKDVYQQAYDLGCKGCTTY 551 >gi|76803442|ref|YP_327711.1| ribonucleotide-diphosphate reductase subunit alpha [Natronomonas pharaonis DSM 2160] gi|76559257|emb|CAI50864.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Natronomonas pharaonis DSM 2160] Length = 564 Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 159/579 (27%), Positives = 254/579 (43%), Gaps = 99/579 (17%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A FY+ +S + ++P N G SCF + + D + I E + K G Sbjct: 62 ADRFYDYMSRGFYSLASPVWSNFGLDRGLPISCFGSYMEDSMESILYTQAEVGEMTKLGG 121 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G + +R G+ I NGKS G F ++ + V+QG R+G Y++ H D Sbjct: 122 GTSGYFGEIRPRGSPIT-NNGKSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDVEHDD 180 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 +EE+L+++ D V D++ YG Sbjct: 181 LEEWLNIKTEG-----------------------------------DPVQDIY--YG--V 201 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I + ++ D E K W +++ G P+I F+D N PQ + Sbjct: 202 IIGDDWFQAMVDGDEEKR-------ETWAEIIEARINIGVPYIIFRDNMNEGKPQVYKDK 254 Query: 579 ---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +++SNLCTEI L ++ +E+ VC L S+N L H+ + D D + + R V++ Sbjct: 255 GYEINASNLCTEIALPATPDESFVCCLSSMNAL-HYGEWK-DTDAVETLTRFLDAVMEEF 312 Query: 636 IDINCHT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 I+ T +E+ + HRAIG+G++G+ S L IP+ S EA++ +E I Sbjct: 313 IEEAEGTQFMERPVRFAKRHRAIGIGVLGWHSYLQSEMIPFDSMEAMKKNEEIFRTIRER 372 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 + S LA E G +G Sbjct: 373 SYEESRRLADEFGEPEVLEG---------------------------------------- 392 Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 G RN+ M++APT + + I G VS SI+P N +V+ T N FL LKQ Sbjct: 393 --YGRRNTTTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKQ 450 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R + + + DGS+ +++ + D+ K+I T EI M +I A++RQK+IDQAQS Sbjct: 451 RGRDEREVWDSIAQQDGSVQHLDCLTDEEKEIFKTFAEIPQMAIINQAAQRQKYIDQAQS 510 Query: 873 LNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 LN+ +D E S K+++ +Y +AW G+K+ YY S +A Sbjct: 511 LNISIDPSEVSVKEINQLYIEAWRKGVKSLYYQNSVNAA 549 >gi|257882207|ref|ZP_05661860.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257817865|gb|EEV45193.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] Length = 719 Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 290/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A+ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAM 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNIFRHYAFHKGIKSIYYVRT 701 >gi|306827105|ref|ZP_07460400.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus pyogenes ATCC 10782] gi|304430700|gb|EFM33714.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus pyogenes ATCC 10782] Length = 719 Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 158/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSNIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749 S +A+ER + F+ S + D F G D + ++ + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|300769756|ref|ZP_07079638.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492664|gb|EFK27850.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 721 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 163/672 (24%), Positives = 292/672 (43%), Gaps = 84/672 (12%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DF + D +DF F+ ++ Y +Y L + + + F RVAM Sbjct: 75 DFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFAD 133 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 E A++ + + + +TP+ N+G R +L SCFL DD+ I + Sbjct: 134 GNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQ 193 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L++ GG+G + + +RG G I +G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 194 LSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYL 253 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 +H D+ FL +K D++ R ++ +PD F + + +A LFSP V + Sbjct: 254 SVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYG 313 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 + ++ E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 314 VPFSYVDVTKE-YDNMVKNPNIRK-TKIKARDLENEISKLQQESGYPYVVNIDTANRENP 371 Query: 573 QQHVGVVHSSNLCTEI------TLNSSSEE------TAVCNLGSINLLAHFANNQFDYDK 620 G + SNLC+E+ +L ++ CNLGS N++ + F Sbjct: 372 ID--GKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF---- 425 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + +K N IGLG MG + + Y S EA Sbjct: 426 -GHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEA 484 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL---------L 729 V+ + +++ + AS E+A+ER + +F+ S + G + D Sbjct: 485 VDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSY-FDKYTTQDWQPKYDKT 543 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 A + D + + ++ W+ LK+ V G+ + N MA+AP +I+ I + S+ P Sbjct: 544 AALFDSIFI--PTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHP----- 596 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++N +++R E I + Y + N D + +A+ Sbjct: 597 ----------------IINRVEER---QEKKIGKIYYPAPYLSN------DTINYYKSAY 631 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAW 893 + D +I+ + Q+ +DQ SL L++ D+ + + L+ + A+ Sbjct: 632 DTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNYAY 691 Query: 894 LMGLKTTYYLRS 905 G+K+ YY+R+ Sbjct: 692 RKGIKSIYYIRT 703 >gi|332522761|ref|ZP_08399013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus porcinus str. Jelinkova 176] gi|332314025|gb|EGJ27010.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus porcinus str. Jelinkova 176] Length = 719 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 154/595 (25%), Positives = 263/595 (44%), Gaps = 84/595 (14%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + N LFSP ++ +E+ IA+ + Sbjct: 271 ADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYDIE-------REYGIAFNYIDITE 323 Query: 530 DRGEIKVFRKISAVALWRKML-----TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E+ KI+ L + L + E+G+P+I D N +P G + SNL Sbjct: 324 KYDELVANPKITKTKLRARDLETEISKLQQESGYPYIINIDTANKTNPID--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+ R L Sbjct: 382 CSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRAL 436 Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + K N GLG MG S L HI Y SPE+VE D ++ Sbjct: 437 TYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESVEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRLP--- 745 + + S +A+ER + F+ S + G + + + +L + ++ +P Sbjct: 497 YWTLVESNNIARERHTTFVGFEKSKYADGTYFDKYVTGEFVPKSDLVKELFKSHFIPQAS 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L++ V+ G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 E +Q E I + Y + + + IP + +A+++D +I+ + Sbjct: 602 ----EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 647 QHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|300024266|ref|YP_003756877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomicrobium denitrificans ATCC 51888] gi|299526087|gb|ADJ24556.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomicrobium denitrificans ATCC 51888] Length = 809 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 169/597 (28%), Positives = 262/597 (43%), Gaps = 91/597 (15%) Query: 321 FMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LT 374 F RVA+ A E +++K A FY ++ F F + L +GT R+ L +CF L Sbjct: 38 FRRVALAAASAEKGGKRQQQKWAGTFYEAMADFGFQPAGRILAGAGTDRNVTLFNCFVLG 97 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + DDL IF +++E A+ + GG+G+D++ +R GA + + G + F+ V + Sbjct: 98 EIADDLSSIFESVKEAALTMQSGGGIGHDFSTLRPRGAPVKSIGADASGPVSFMDVWDAM 157 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + G+R+GA+ A L H D+E F+ + D +R + N + + D FM V Sbjct: 158 CRTIMSAGQRRGAMMATLRCDHPDIEAFIAAKA----DSQRLRNFNLSVLVTDAFMDAVR 213 Query: 495 QNAGWTL-FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++A W L FS KV++ I A ALW +++ Sbjct: 214 RDAPWDLIFSG------------------------------KVYKTIPARALWDQIMRAT 243 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----- 608 F+ P + F D N + Q+ + ++N C E L C LGSINL Sbjct: 244 FDYAEPGVIFIDRINAANNLQYCETISATNPCGEQPL----PPYGACLLGSINLARLVEE 299 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 A D KL + + TAVR LDNVIDI+ + + + + R IGLG+ G AL Sbjct: 300 PFTATAHVDIAKLEARVATAVRFLDNVIDISRYPVPQQAQEARAKRRIGLGVTGLADALI 359 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +PY S A E A M I A AS LA E+GA+ L+D V Sbjct: 360 FLGLPYGSAAAREQAARWMAIIQNAAYRASAALAAEKGAF-----PLYDANVV------- 407 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQ 787 L +RL D++++ + G+RN +IAPT TI+ + G VS I+P + Sbjct: 408 -------LTRPNITRLD-DDVREAIAANGLRNGCLTSIAPTGTISLLAGNVSSGIEPVFD 459 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 ++ + +S D V + R D + D ++ L + T Sbjct: 460 FVFRRRVLS-DGGGAEEETVEDFAHRAFRD-------AFGDDAV---------LPEAFVT 502 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 A + P + + Q ++D A S + E S + IY +A+ GLK TTY Sbjct: 503 AETLTPSEHVAMQATLQPYVDSAISKTINCPEDISFESFRDIYIEAYDSGLKGCTTY 559 >gi|308068542|ref|YP_003870147.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide reductase) [Paenibacillus polymyxa E681] gi|305857821|gb|ADM69609.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Paenibacillus polymyxa E681] Length = 694 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 155/585 (26%), Positives = 268/585 (45%), Gaps = 66/585 (11%) Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT N+G +R +L SCFL + D L I L L+K GG+ + + +R G Sbjct: 145 ATPTFLNAGKSRRGELVSCFLLEMDDSLNSINYVLNTCMQLSKIGGGVAVNLSKLRARGE 204 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G ++G++P LK+ D +Q G+RKG+ AY + DV EFLD +K D+ Sbjct: 205 AIKGVEGAAKGIMPVLKLMEDGFSYADQMGQRKGSGAAYYNIFGWDVLEFLDSKKINADE 264 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R R ++ +P+ F K N +F+P V + + + + E Y+ Sbjct: 265 RVRLKTLSIGLLVPNRFYKLAQDNEPLHVFAPYSVFKAYGTHLDDMNLD-EMYDTLLADD 323 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLN 591 +K +SA + K+ + E+G+P+I K N ++VG V SNLCTEI L Sbjct: 324 RVKKKIAMSARDMLTKIAMIQLESGYPYIMNKSNANQAHALKNVGQVKMSNLCTEIFQLQ 383 Query: 592 SSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-- 638 +SE T CNL S+N++ N ++ K+ ++ + L +V D+ Sbjct: 384 ETSEITDYGQQDTIRRDVSCNLASLNIV-----NVMEHGKIRESVHEGMIALTSVSDMTQ 438 Query: 639 --NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N + KA + H+ +GLG+M I Y S EA + +++H+I Sbjct: 439 VANAPGVAKANREMHS---VGLGVMNLHGYFAKNKIAYESNEAKDFVRTFFMTMNYHSIE 495 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSRLPWDEL 749 S+E+A+ G ++ F+ S + GV+ D + A V++ + + WD+L Sbjct: 496 KSMEIAKAAGQSFYGFEESDYATGVYFDRYLNTDYRPITARVQELFKGIYVPTSADWDKL 555 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K V G+ ++ MAIAPTA+I+ I + S+ P +V + Sbjct: 556 KADVMKNGLYHAYRMAIAPTASISYIQNATSSVMP---------------------IVEQ 594 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 ++ R + + Y + D + +A+++D +++ + Q +DQ Sbjct: 595 IETRTYANSTTYYPMPY----------LQKDNLFFYKSAYQMDQFKVLDLIAEIQPHVDQ 644 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 S L+++ + + ++L Y A GLK+ YY R++ SVE+ Sbjct: 645 GISTVLHVNSDVTTRQLARCYLYAAHKGLKSLYYTRTKK-LSVEE 688 >gi|171779439|ref|ZP_02920403.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282056|gb|EDT47487.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 718 Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 169/662 (25%), Positives = 286/662 (43%), Gaps = 82/662 (12%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 D Y F F+ ++ Y++Y + N S+ + + F R A + Sbjct: 81 DFAYNYGFEFKSFMAAYKFYNQYAMKTNDSKYYL-ENFEDRAVFNALYLANGDRNLAHKI 139 Query: 343 YNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 L S + +TPT N+G R ++ SCFL + D + I + L++ GG+G Sbjct: 140 LEELISQRYQPATPTFLNAGKKRRGEMVSCFLIDIEDSMLSIGRNINSALQLSRIGGGVG 199 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G+ I S GV+P +K+ D+ NQ G+R GA YL +H D+ E Sbjct: 200 VNLSNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILE 259 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL +K D++ R ++ +PD + + + N LF+P V ++ + ++ Sbjct: 260 FLSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFNPYHVERVYGIPFSYVDLT 319 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y+ D EI+ I+A L +++ + E+G+P+I D N +P + G + Sbjct: 320 KE-YDTMVDNDEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTNPVK--GKIIM 375 Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI LN V CNLGS+N++ + F +I A+ Sbjct: 376 SNLCSEILQPQEPSILNPDLSYKKVGTDISCNLGSMNMVNLIKSKDF-----GKSIEYAI 430 Query: 630 RVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D + + N + IGLG MG + L L I Y S EA+E D Sbjct: 431 RALTTVTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFL 490 Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSR 743 ++++++ AS ++A E+ + F+ S + G + +E ++ N Sbjct: 491 AMNYYSLKASHQIAVEKNETFHDFENSRYADGSHFDYYLAKEFHFTSEKVAKIFENIL-- 548 Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 LP W LK+ V G+ + N +AIAP +I+ I S S+ P Q + Sbjct: 549 LPTIEDWQLLKEDVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLI---------- 598 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E + + Y + N K + TA+ +D +I+ Sbjct: 599 ---------ENRQ-----EKKVGSIFYPAPYLSN------KTLKYYKTAYNMDQRKIIDI 638 Query: 860 ASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYL 903 ++ Q+ IDQ SL L++ P G + L+ + AW G+K+ YY+ Sbjct: 639 YAKAQQHIDQGMSLTLFMRSVLPEGIYEWKKQGSSKLTTRDLNRLRNYAWTKGIKSLYYV 698 Query: 904 RS 905 R+ Sbjct: 699 RT 700 >gi|288904914|ref|YP_003430136.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus gallolyticus UCN34] gi|288731640|emb|CBI13197.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus gallolyticus UCN34] Length = 719 Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 171/689 (24%), Positives = 299/689 (43%), Gaps = 91/689 (13%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHING 311 PE+ +Y + +++ LA DL+ + F F+ ++ Y +Y L N Sbjct: 68 PEFISKYTPDFIES--------------LAKDLQ-AQGFRFKSFMAAYKFYQQYALKTND 112 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSS 370 + + ++ R+ E+ A + + + +TP+ N+G +R + S Sbjct: 113 GKYYL-ESIEDRILFNALYFADGNEELARDLATEMIHQRYQPATPSFLNAGRSRRGEFVS 171 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL +V DD+ I ++ L++ GG+G + +R GA I G G + GV+P +K+ Sbjct: 172 CFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGYEGAASGVVPVMKL 231 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G+R+GA YL+ +H D+ FL +K D++ R ++ +PD F Sbjct: 232 FEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKENADEKIRVKTLSLGITVPDKFY 291 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + N LFSP V + + +I E + A+ +K KI A L ++ Sbjct: 292 ELARNNEEMYLFSPYSVEREYGVPYSYVDITAEYDKMVANPNIVKT--KIRARDLETEIS 349 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV---- 599 + E+G+P++ D N +P G + SNLC+E+ +N + E + Sbjct: 350 KLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVLQVQTPSVINDAQEFVKMGTDI 407 Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIG 657 CNLGS N++ N D +I+ R L V D + + K N G Sbjct: 408 SCNLGSTNVV-----NMMDSPDFGRSIKAMTRALTFVSDTSSIEAVPTIKHGNEQAHTFG 462 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG MG + L HI Y SPE++E + +++ + S +A+ER + F+ S + Sbjct: 463 LGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESNHIARERQQTFVGFENSKY 522 Query: 717 DQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770 G + I G D + + +P W +L+ V T G+ + N +A+AP Sbjct: 523 ADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRDAVMTDGLYHQNRLAVAPNG 582 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ I VS S+ P Q + E +Q E I + Y Sbjct: 583 SISYINDVSASLHPITQRI-------------------EERQ-----EKKIGKIYYPAAG 618 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------ 882 + + + IP + +A+++D +I+ + + +DQ SL L+L D P G Sbjct: 619 L-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLFLRSDIPQGLYEWKT 672 Query: 883 ------KKLDFIYRQAWLMGLKTTYYLRS 905 + L + A+ G+K+ YY+R+ Sbjct: 673 QSKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|261209283|ref|ZP_05923675.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289567002|ref|ZP_06447403.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium D344SRF] gi|294615273|ref|ZP_06695150.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1636] gi|260076829|gb|EEW64564.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289161203|gb|EFD09102.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium D344SRF] gi|291591870|gb|EFF23502.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1636] Length = 719 Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 291/657 (44%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 E+ F+F+ ++ Y +Y L N + + + RVA E+ A+ + + Sbjct: 88 EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ +KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N E + CNLGS N++ N ++RT R L Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437 Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + D + I+ K NHT IGLG MG + L + Y S ++++ + Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745 +++ + S +A ER + +F+ S + G + + + + E A+ +P Sbjct: 495 LNYWTLVESNNIACERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W+ LK+ V G+ + N +A+AP +I+ I S SI P Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + +++R E I + Y + N E IP + +A+++D +I+ + Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|327489433|gb|EGF21226.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1058] Length = 719 Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 174/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%) Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +DF F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 89 QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + +I + E Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383 Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI LN + E CNLGS N++ + F +IRT R L Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438 Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + T + N GLG MG S L I Y S EAVE +++ Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498 Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746 + S +A+ER + +F+ S + G F G D + + S W Sbjct: 499 TLVESNNIARERRVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 E +Q E I + Y + + E IP + +A+++D +I+ + + Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|293365330|ref|ZP_06612047.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus oralis ATCC 35037] gi|291316780|gb|EFE57216.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus oralis ATCC 35037] Length = 719 Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 174/660 (26%), Positives = 290/660 (43%), Gaps = 88/660 (13%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y S E+VE Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739 +++ + S +A+ERG + +F+ GS +D+ G F S + +D + Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 ATD---WAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 E +Q E I + Y + + + IP + +A+++D +I+ Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|18653875|ref|NP_570809.1| large ribonucleotide reductase [Macacine herpesvirus 5] gi|4494973|gb|AAD21395.1| large ribonucleotide reductase [Macaca mulatta rhadinovirus 17577] Length = 788 Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 189/741 (25%), Positives = 307/741 (41%), Gaps = 104/741 (14%) Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMG 327 HE+ +D L Y YL YD Y L GS E FMRVA+ Sbjct: 96 HEAALDGLLQDFKQSKAYTNFVNCGYLSAVRFYDTYVLRTQGSSPIFESVAQMFMRVAVF 155 Query: 328 LA--------LKET-----EKEKRAVEFYNLLSSFHFM------CSTPTLFNSGTRHPQL 368 +A L+ET E E E Y + +FH++ C+TP L ++G R QL Sbjct: 156 VACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYISSQIVCCATPVLRSAGLRGGQL 215 Query: 369 SSCFL---TTVPDDLYGIFGALQE--NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 SSCF+ + +D AL E + +LA SG +G D V H + Sbjct: 216 SSCFILKPSMATED--KTLKALHEEMSPLLASKSG-VGID---VSSFAEH--------KN 261 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 + LK+ N N R AY+E WH + +FL+ + +++ R H++ Sbjct: 262 ITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAK--MPENQERCHNLFQGV 319 Query: 484 WIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 +P+LF + N W LF+P+ +L LYG EFEI Y R G K + Sbjct: 320 CVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EYNRLVAAG--KHSSSLP 374 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVC 600 ++ ++ + +TG P++ K+ N + G ++ SNLC EI + + +VC Sbjct: 375 LKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNLCAEI-VQQPEGQASVC 433 Query: 601 NLGSINLLAHF-------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 NL +I+L + F ++ L + AV +++ I E + Sbjct: 434 NLANISLPKCLRPHRGESGVEPGKGDVTFGFELLDDAVEAAVIIVNACILGGTAPTESVR 493 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE--LAQER 705 + R++G+G+ G L Y E+ ++ E + + F A+ S E L E Sbjct: 494 RGQE-ERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQAMYFTAVQTSHEIVLLGEG 552 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 + ++ S QGVF + D + + W++L + + G+ NS +A Sbjct: 553 TPFRGWERSRLAQGVFHW-------QTWDGVKPSHPPLERWEQLGRSIAQHGIFNSQFLA 605 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 + PTA + + G +++ P + N+ K + N +K DL ++ Sbjct: 606 LMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKRVKPGDL------RTVR 659 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 + G + + D KI TAF+ P+ +E A R ++DQ+QSLN +L E + Sbjct: 660 RYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQSQSLNFFLKEEQATRA 719 Query: 886 DFI---YRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--NSSTHSLG 939 +I + +GLKT YY R ++K T KLNA+ D + S G Sbjct: 720 SYIRDLLLTGYRLGLKTMLYYCR------IQKQT------KLNALQCLDQVVGDNISSEG 767 Query: 940 IPSSCTSDTE------CEVCQ 954 S+C + C CQ Sbjct: 768 AESNCVQKADGERTKVCLACQ 788 >gi|89070843|ref|ZP_01158088.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516] gi|89043581|gb|EAR49790.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516] Length = 761 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 159/594 (26%), Positives = 259/594 (43%), Gaps = 94/594 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + +FY L F F+ + +GT R L +CF + TVPD + Sbjct: 37 RIARALASVEADPAAWEPKFYAALEDFRFLPAGRITAGAGTDRSVTLFNCFVMGTVPDTM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAPVAGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H DVE+F++ + D R N + + D FM+ V +A W Sbjct: 157 AGSRRGAMMATMRCDHPDVEQFIEAKS----DPARLRMFNMSVLVTDPFMEAVKADADWE 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +G E VFR + A LW +++ ++ P Sbjct: 213 L-----------TFGGE------------------VFRTVRARELWDRIMRSTYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + F D N + + + ++N C E L C LGSINL A Sbjct: 244 VIFIDRINEMNNLAYCETIAATNPCGEQPL----PPYGACLLGSINLARLVAEPFAEGAS 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L + TAVR++DNV+D + + + + R IGLG+ G AL ++ Y Sbjct: 300 LDEAALDELVATAVRMMDNVVDASRFPLPQQAEEARNKRRIGLGVTGLADALLMVGQRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + M+ I+ A AS +LA E+GA+ F+ P + G +A++ Sbjct: 360 SEEAAALTEAWMKRIARAAYLASADLAAEKGAFPLFQAE-------PYLASGTMAQMD-- 410 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 D+++ + G+RN+ ++APT TI+ G VS I+P + Y + Sbjct: 411 -----------DDVRAAIAEKGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAFAYNRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D + +V+ Q LW E + G+ E L A + PM Sbjct: 460 LQKDGSRTEEEVVDYAVQ--LWRE-----------TRGDAE-----LPAHFVNAQTLAPM 501 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY 901 + + QKW+D S++ ++ P+ +DF +Y +A+ G K TTY Sbjct: 502 DHVRMQAAAQKWVD--SSISKTINVPA--DIDFESFKDVYMEAYETGCKGCTTY 551 >gi|254555735|ref|YP_003062152.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum JDM1] gi|308179715|ref|YP_003923843.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044662|gb|ACT61455.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum JDM1] gi|308045206|gb|ADN97749.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ST-III] Length = 721 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 163/674 (24%), Positives = 290/674 (43%), Gaps = 88/674 (13%) Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 DF + D +DF F+ ++ Y +Y L + + + F RVAM Sbjct: 75 DFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFAD 133 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 E A++ + + + +TP+ N+G R +L SCFL DD+ I + Sbjct: 134 GNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQ 193 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L++ GG+G + + +RG G I +G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 194 LSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYL 253 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 +H D+ FL +K D++ R ++ +PD F + + +A LFSP V + Sbjct: 254 SVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYG 313 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 + +I E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 314 VPFSYVDITKE-YDNMVKNPNIRK-TKIKARDLENEISKLQQESGYPYVVNIDTANRENP 371 Query: 573 QQHVGVVHSSNLCTEI------TLNSSSEE------TAVCNLGSINLLAHFANNQFDYDK 620 G + SNLC+E+ +L ++ CNLGS N++ + F Sbjct: 372 ID--GKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF---- 425 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ VR L V D N + +K N IGLG MG + + Y S EA Sbjct: 426 -GHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEA 484 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----------PIDSIG 727 V+ + +++ + AS E+A+ER + +F+ S + G + D Sbjct: 485 VDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKYTTQDWQPKYDKTT 544 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L + + ++ W+ LK+ V G+ + N MA+AP +I+ I + S+ P Sbjct: 545 ALFD-----GIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHP--- 596 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 ++N +++R E I + Y + N D + + Sbjct: 597 ------------------IINRVEER---QEKKIGKIYYPAPYLSN------DTINYYKS 629 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQ 891 A++ D +I+ + Q+ +DQ SL L++ D+ + + L+ + Sbjct: 630 AYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNY 689 Query: 892 AWLMGLKTTYYLRS 905 A+ G+K+ YY+R+ Sbjct: 690 AYRKGIKSIYYIRT 703 >gi|325977863|ref|YP_004287579.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177791|emb|CBZ47835.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 719 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 168/661 (25%), Positives = 291/661 (44%), Gaps = 77/661 (11%) Query: 281 LANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 LA DL+ + F F+ ++ Y +Y L N + + ++ R+ E+ A Sbjct: 82 LAKDLQ-AQGFRFKSFMAAYKFYQQYALKTNDGKYYL-ESIKDRILFNALYFADGNEELA 139 Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 + + + +TP+ N+G +R + SCFL +V DD+ I ++ L++ G Sbjct: 140 RDLATEMIHQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGG 199 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D Sbjct: 200 GVGISLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPD 259 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + FL +K D++ R ++ +PD F + N LFSP V + + Sbjct: 260 IMAFLSTKKENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYV 319 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 +I E + A+ +K KI A L ++ + E+G+P++ D N +P G Sbjct: 320 DITAEYDKMVANPNIVKT--KIRARDLETEISKLQQESGYPYVVNIDTANRTNPID--GK 375 Query: 579 VHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIR 626 + SNLC+E+ +N + E + CNLGS N++ + F +I+ Sbjct: 376 IIMSNLCSEVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIK 430 Query: 627 TAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R L V D + + K N GLG MG + L HI Y SPE++E + Sbjct: 431 AMTRALTFVSDTSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNI 490 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTS 742 +++ + S +A+ER + SF+ S + G + I G D + + Sbjct: 491 YFMLMNYWTLVESNHIARERKQTFVSFENSKYADGSYFDKYITGEFVPKSDRVKELFAEH 550 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +P W +L+ V T G+ + N +A+AP +I+ I VS S+ P Q + Sbjct: 551 FIPSGEDWAKLRDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI--------- 601 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 E +Q E I + Y + + + IP + +A+++D +I+ Sbjct: 602 ----------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVID 640 Query: 859 SASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+L D P G + L + A+ G+K+ YY+R Sbjct: 641 VYAAATEHVDQGLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIR 700 Query: 905 S 905 + Sbjct: 701 T 701 >gi|307703870|ref|ZP_07640811.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis ATCC 35037] gi|307622705|gb|EFO01701.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis ATCC 35037] Length = 623 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 166/611 (27%), Positives = 271/611 (44%), Gaps = 86/611 (14%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E A + N + + +TP+ N+G R +L SCFL V DD+ I ++ L+ Sbjct: 40 EAIATDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 99 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL Sbjct: 100 RIGGGVGISLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 159 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 +H D+ FL +K D++ R ++ +PD F + +N LFSP V + + Sbjct: 160 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVP 219 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 +I E Y+ I+ KI A L ++ + E+G+P++ D N +P Sbjct: 220 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 277 Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622 G + SNLC+EI +N + E CNLGS N++ + F Sbjct: 278 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 330 Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +IR VR L V D + TI+ HT GLG MG S L I Y S E Sbjct: 331 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAE 387 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGL 728 +VE +++ + S +A+ERG + +F+ GS +D+ G F S + Sbjct: 388 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRV 447 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 +D + T W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q Sbjct: 448 KELFKDVFIPSATD---WAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQR 504 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + E +Q E I + Y + + + IP + +A Sbjct: 505 I-------------------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSA 534 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWL 894 +++D +I+ + + +DQ SL L++ D P G + L + A+ Sbjct: 535 YDMDMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFN 594 Query: 895 MGLKTTYYLRS 905 G+K+ YY+R+ Sbjct: 595 KGIKSIYYVRT 605 >gi|74316076|ref|YP_313816.1| ribonucleoside-diphosphate reductase subunit alpha [Thiobacillus denitrificans ATCC 25259] gi|74055571|gb|AAZ96011.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus denitrificans ATCC 25259] Length = 600 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 161/607 (26%), Positives = 272/607 (44%), Gaps = 70/607 (11%) Query: 318 QAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF- 372 +A + RVA +A + E + RA+ FY LL F F+ L +G+ H L +CF Sbjct: 29 RASWQRVAQAVA--QAEVDARALWADRFYALLDDFRFLPGGRILAGAGSGHRVTLFNCFV 86 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + + DD+ IF AL+E A+ ++ GG+G D++ +R G T + G + F+ + + Sbjct: 87 MGEIADDIEDIFEALKEGALTMQHGGGVGYDFSTLRPAGTIAQATGTIASGPVSFMHIWD 146 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 V G R+GA+ A L H D+E F+D +++ R N + + D F+ Sbjct: 147 AMCATVLSTGARRGAMMATLRCDHPDIEAFVDAKRDPAVLRH----FNLSVQVSDAFIAA 202 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +A W L P L D + + ++ +V R + A ALW+++L Sbjct: 203 VDADADWPLVFP-----LRDGEPADGAVVRRHWTGSTTAVPCRVLRTVRARALWQRILRA 257 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++T P + F D N + + ++N C EI L + C+LGS+NL A F Sbjct: 258 AYDTAEPGVLFVDTINRDNTLAGRETLTTTNPCGEIPLPAYG----ACDLGSLNLTA-FV 312 Query: 613 NNQFDYDKLASTIRTA------VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 F D VR LD+VID++ + ++ + R IGLG+ G A Sbjct: 313 VAPFAADARLDLAALGDAAALAVRFLDDVIDVSRYPLQAQAREARFKRRIGLGITGLADA 372 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L LL + Y S A ++A+ +M + A AS++LA+E+G + + + S + Sbjct: 373 LVLLGLDYDSEPARQLAERAMRTVRDAAYRASIDLAREKGGFPALERSAF---------- 422 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPS 785 LA RLP E++ + G+RNS+ +AIAP TI+ + +S I+P Sbjct: 423 ---------LASGFAGRLP-PEIRDGIARDGIRNSHLLAIAPAGTISLLANNLSSGIEPI 472 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + + + D + + D A + L G +G P L + Sbjct: 473 FAAEASRRILQPD---------GSYRSHAVSDYACL--LWRAHGGVGQ----PPALVE-- 515 Query: 846 ATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 A ++DP+ + + Q +D A +++N+ D + + + +YRQA +GLK Sbjct: 516 --AQQLDPVAHLAMQAALQPAVDNAISKTINVAADI-AFARFEALYRQAHALGLKGCTVF 572 Query: 904 RSRSATS 910 R T Sbjct: 573 RPNPVTG 579 >gi|293570203|ref|ZP_06681273.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] gi|291609716|gb|EFF38976.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] Length = 718 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 266/608 (43%), Gaps = 98/608 (16%) Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L S + +TPT N+G R ++ SCFL + D + I + L++ GG+G + Sbjct: 143 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G+ I S GV+P +K+ D+ NQ G+R GA YL +H D+ EFL Sbjct: 203 SNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLS 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD + + + N LF+P V ++ + ++ E Sbjct: 263 TKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMCLFNPYHVERVYGIPFSYVDLTKE- 321 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ D GEI+ I+A L +++ + E+G+P+I D N +P + G + SNL Sbjct: 322 YDTMVDNGEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTNPVK--GKIIMSNL 378 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI LN V CNLGS+N++ N + +I A+R L Sbjct: 379 CSEILQPQEPSILNPDLSYKKVGTDISCNLGSMNMV-----NLMEAKDFGKSIEYAIRAL 433 Query: 633 DNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 + D + + N + IGLG MG + L L I Y S EA+E D ++ Sbjct: 434 TTITDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNSIDYESDEALEFVDAFFLAMN 493 Query: 692 FHAISASVELAQERG------AYSSFK-GSLWD-----------QGVFPIDSIGLLAEVR 733 ++++ AS ++A E+ YS + GS +D + V I LL + Sbjct: 494 YYSLKASHQIAIEKNETFHNFEYSRYADGSYFDYYLAKEFHFTSEKVAKIFENILLPTIE 553 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D W LK+ V G+ + N +AIAP +I+ I S S+ P Q + Sbjct: 554 D-----------WQLLKENVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLI---- 598 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 E +Q E + + Y + N + + TA+ +D Sbjct: 599 ---------------ENRQ-----EKKVGSIFYPAPYLSN------KTLRYYKTAYNMDQ 632 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGL 897 +I+ ++ Q+ IDQ SL L++ P G + L+ + AW G+ Sbjct: 633 RKIIDIYAKAQQHIDQGMSLTLFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGI 692 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 693 KSLYYVRT 700 >gi|219682806|ref|YP_002469189.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis AD011] gi|219620456|gb|ACL28613.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium animalis subsp. lactis AD011] gi|289178105|gb|ADC85351.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 708 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 182/702 (25%), Positives = 292/702 (41%), Gaps = 94/702 (13%) Query: 252 YPEY--FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y EY F +Y E + A H + K+ R +A L+ ++L Sbjct: 60 YYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYA-----LKTFDGEHYLE- 113 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQL 368 + PQ A+ LAL + + E A+ + + F +TPT N G + + Sbjct: 114 -----DFPQ---RAAAVSLALADGD-EPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 164 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I + L+K GG+ + +R GA I +S GV+P + Sbjct: 165 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 224 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R + IPD+ Sbjct: 225 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 284 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + + LFSP +V ++ + + + + E AD K F I A + Sbjct: 285 TFELAKRREKMALFSPYDVERVYGVPFADVNVTAKYEEMLADDRIRKTF--IDAREFFTT 342 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 + + FE+G+P++ F+D N +P G + SNLC+EI L T Sbjct: 343 LAEIQFESGYPYLLFEDTANAANPID--GRITMSNLCSEI-LQVQEPSTYYEDLSYAHVG 399 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654 CNLGS+N+ LA + TA+R L V + + ++N Sbjct: 400 RDVSCNLGSLNIARAMDAG------LAGPVETAIRALTAVSQHTHIGAVPSIARANEEGH 453 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713 AIGLG M L I Y SPEA++ + E ++FHA AS LA E G A++ F Sbjct: 454 AIGLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFAD 513 Query: 714 SLW-----DQGVF------PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGM 758 S + D F +D+ VR L R+P W EL+ + G+ Sbjct: 514 SAYARQPSDGNYFDKYLDGSLDTEPRTGTVR-ALFERFGVRIPTARDWRELQGEILRDGI 572 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWD 817 N A+ PT +I+ I + SI P + + K G ++ N+ DL+D Sbjct: 573 YNQYLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND--NLDLYD 630 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A+EI ++++ + +DQ SL L+ Sbjct: 631 D-----------------------------AYEIGWKAIVDTYAEATPHVDQGLSLTLFF 661 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 D + + L+ AW G+KT YY+R R ++E + + G Sbjct: 662 PDTVTTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVAG 702 >gi|290889637|ref|ZP_06552727.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429] gi|290480835|gb|EFD89469.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429] Length = 723 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 154/605 (25%), Positives = 274/605 (45%), Gaps = 86/605 (14%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TP+ N+G R +L SCF+ DD+ I + L+K GG+G + + VR Sbjct: 153 FQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNVRE 212 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA + G + GV+P +K+ D +Q G R+GA AYL +H DV FL +K Sbjct: 213 AGASVMGLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKKEN 272 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYER 527 D++ R ++ +PD F + + LFSP +D+ +YG F + Y+ Sbjct: 273 ADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSP---ADVEKVYGVPFNYVDLTKEYDN 329 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 EIK + + A L ++ + E+G+P++ D N +P G V +SNLC+E Sbjct: 330 MVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPV--YGKVVTSNLCSE 386 Query: 588 IT-------LNSSSEETAV-----CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633 I +N+ E T + CNLGSIN+ + H A D+ K T+ A+ + Sbjct: 387 ILQTQTISRINNEQEYTQLGADISCNLGSINIDNMMHTA----DFGKSVETMTRALTFVS 442 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 DI+ + + N AIGLG MG + L I Y A++ + +++ Sbjct: 443 ESSDISV--VPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYY 500 Query: 694 AISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSRLP--- 745 + AS ++A+ERG ++ F+ S + G + + G + +L + +P Sbjct: 501 TLLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDY--HVPTIE 558 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W LK+ V G+ N+ A+APT +I+ + + S+ P Sbjct: 559 DWQRLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQP-------------------- 598 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +V+ ++ R E M + Y + N E +P + +A+++D +I++ + Q Sbjct: 599 -IVSRVEAR---AEGMTGRVFYPANGLSN-ETLP-----YYVSAYDLDQRKVIDTYAAAQ 648 Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + +DQ ++ L++ D+ + + L + A+ G+K+ YY+R+ + Sbjct: 649 EHVDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTD 708 Query: 909 TSVEK 913 + E+ Sbjct: 709 DNTEQ 713 >gi|23015529|ref|ZP_00055302.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum magnetotacticum MS-1] Length = 775 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 159/591 (26%), Positives = 256/591 (43%), Gaps = 87/591 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 RVA LA E E F+ + F + + + +GT R L +CF + +PDD+ Sbjct: 36 RVARSLAATEAEPAVWEQRFFESMEDFKVLPAGRIISGAGTDRKVTLFNCFVMGDIPDDM 95 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 96 AGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMCRTIMS 155 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F+D ++ G R N + + D FM+ V ++ W Sbjct: 156 AGSRRGAMMATMRCDHPDIEAFIDAKREAG----RLRMFNLSVLVTDPFMQAVKEDGPW- 210 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 E+ ++ ++ + A LW K++ + P Sbjct: 211 ------------------ELTFKGV----------TYKSLPARELWNKIMRATYSYAEPG 242 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + +H++N C E L + VC LGS+NL A + F Sbjct: 243 VIFIDRINRLNNLSYCEDIHATNPCGEQPLPA----YGVCLLGSLNL-ARLVDRPFEDGA 297 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D DKL +R AVR++DNVID++ + +++ + + R IGLG+ G AL L Y Sbjct: 298 RLDLDKLDRLVRVAVRMMDNVIDVSNYPLDRHRHEALSKRRIGLGITGLADALILCGARY 357 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 EA+ + + M I A AS ELA+E+GA FP L + Sbjct: 358 GGREAIRLTETWMAAIRRSAYLASAELAREKGA-------------FP------LYDAEK 398 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKS 793 LA L D ++ ++T G+RN+ +IAPT TI+ VS ++P + Y + Sbjct: 399 YLAGETIQGLDSDVIEA-IRTHGIRNALLTSIAPTGTISLFADNVSSGLEPVFAFTYTRG 457 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D T +R E +SD Y E P L A + P Sbjct: 458 VLQRDGT-----------RR----EEEVSDYAYRLFRRLRGENAP--LPTYFVDALSLTP 500 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 + + QK++D + S + + E S +Y QA+ +G K TTY Sbjct: 501 GDHVVMQAAVQKYVDSSISKTINVPEDISFDAFKDVYTQAYELGCKGCTTY 551 >gi|183601892|ref|ZP_02963261.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|241190382|ref|YP_002967776.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195788|ref|YP_002969343.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218777|gb|EDT89419.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|240248774|gb|ACS45714.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250342|gb|ACS47281.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793369|gb|ADG32904.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis V9] Length = 698 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 182/702 (25%), Positives = 292/702 (41%), Gaps = 94/702 (13%) Query: 252 YPEY--FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y EY F +Y E + A H + K+ R +A L+ ++L Sbjct: 50 YYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYA-----LKTFDGEHYLE- 103 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQL 368 + PQ A+ LAL + + E A+ + + F +TPT N G + + Sbjct: 104 -----DFPQ---RAAAVSLALADGD-EPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 154 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I + L+K GG+ + +R GA I +S GV+P + Sbjct: 155 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 214 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R + IPD+ Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 274 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + + LFSP +V ++ + + + + E AD K F I A + Sbjct: 275 TFELAKRREKMALFSPYDVERVYGVPFADVNVTAKYEEMLADDRIRKTF--IDAREFFTT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 + + FE+G+P++ F+D N +P G + SNLC+EI L T Sbjct: 333 LAEIQFESGYPYLLFEDTANAANPID--GRITMSNLCSEI-LQVQEPSTYYEDLSYAHVG 389 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654 CNLGS+N+ LA + TA+R L V + + ++N Sbjct: 390 RDVSCNLGSLNIARAMDAG------LAGPVETAIRALTAVSQHTHIGAVPSIARANEEGH 443 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713 AIGLG M L I Y SPEA++ + E ++FHA AS LA E G A++ F Sbjct: 444 AIGLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFAD 503 Query: 714 SLW-----DQGVF------PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGM 758 S + D F +D+ VR L R+P W EL+ + G+ Sbjct: 504 SAYARQPSDGNYFDKYLDGSLDTEPRTGTVR-ALFERFGVRIPTARDWRELQGEILRDGI 562 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWD 817 N A+ PT +I+ I + SI P + + K G ++ N+ DL+D Sbjct: 563 YNQYLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND--NLDLYD 620 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A+EI ++++ + +DQ SL L+ Sbjct: 621 D-----------------------------AYEIGWKAIVDTYAEATPHVDQGLSLTLFF 651 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 D + + L+ AW G+KT YY+R R ++E + + G Sbjct: 652 PDTVTTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVAG 692 >gi|322412097|gb|EFY03005.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 719 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 161/609 (26%), Positives = 267/609 (43%), Gaps = 78/609 (12%) Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390 ET + A+E N + +TP+ N+G +R +L SCFL V DD+ I ++ Sbjct: 136 ETLAKDLAIEMINQ----RYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSA 191 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L++ GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA Sbjct: 192 LQLSRIGGGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVV 251 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL +H D+ FL +K D++ R ++ +PD F + +N LFSP V Sbjct: 252 YLNVFHPDIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKE 311 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + + +I E A+ K KI A L ++ + E+G+P+I D N Sbjct: 312 YGIPFNYLDITNMYDELVANPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKA 369 Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618 +P G + SNLC+EI +N + E + CNLGS N+L + F Sbjct: 370 NPID--GKIIMSNLCSEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSPDF-- 425 Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +I+T R L V D + + K N GLG MG S L HI Y SP Sbjct: 426 ---GRSIKTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSP 482 Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 E++E D +++ + S +A+ER + F S + G + I + +L Sbjct: 483 ESIEFTDIYFMLMNYWTLVESNNIARERQTTFVGFDKSKYADGTYFDKYITGQFVPKSDL 542 Query: 737 AMN--RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + +P W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + Sbjct: 543 VKDLFKNHFIPQASDWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI- 601 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 E +Q E I + Y + + + IP + +A++ Sbjct: 602 ------------------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYD 632 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMG 896 +D +I+ + + +DQ SL L+L + + + L + A+ G Sbjct: 633 MDMRKVIDVYAAATEHVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKG 692 Query: 897 LKTTYYLRS 905 +K+ YY+R+ Sbjct: 693 IKSIYYIRT 701 >gi|302879218|ref|YP_003847782.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Gallionella capsiferriformans ES-2] gi|302582007|gb|ADL56018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Gallionella capsiferriformans ES-2] Length = 942 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 167/605 (27%), Positives = 269/605 (44%), Gaps = 79/605 (13%) Query: 323 RVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379 RVA GLAL E + ++RA E + L F+ + +G L +CF+ V D Sbjct: 28 RVARGLALAE-KPDQRAHWEEAFYLAQENGFVPAGRINSAAGLAIQATLINCFVQPVGDA 86 Query: 380 LYGI-------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + GI + ALQ+ A + GG+G D++ +R GA + GTN ++ G I +++V + Sbjct: 87 ISGITDGKPGIYDALQQAAETMRRGGGVGYDFSTIRPEGALVKGTNSRASGPISYMRVFD 146 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA L H D+E+F+ K+ GD R + N + + D M+ Sbjct: 147 RSCETVESAGARRGAQMGVLRCDHPDIEKFISA-KDKGDLR----NFNISVGVTDALMQA 201 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + SD ++ E A + ++R++ A LWR+++ Sbjct: 202 VEAD-----------SDFELVHTAEPAAALRDAGATQRADGRWIYRRVRATDLWRQIIES 250 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++ P + F D N + + V+ ++N C E L C LGSINL Sbjct: 251 TYDHAEPGVLFIDLMNRDNNLSYCEVIEATNPCAEQPL----PPYGCCCLGSINLTRMVK 306 Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 N FDY+ I+ AVR+LDNV+D+ + + + R IGLG G AL Sbjct: 307 NPFSTHAGFDYEPFKQLIKVAVRMLDNVLDVTAWPLPEQQLEAQNKRRIGLGYTGLGDAL 366 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L + Y + EA A + + A +AS+EL++ERGA FP Sbjct: 367 VMLGLRYDTEEARAFAADITRIMRDEAYAASIELSKERGA-------------FP----- 408 Query: 728 LLAEVRDELAMNR-TSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDP 784 L + LA R SRLP DE+K ++ G+RNS+ ++IAPT TI A S I+P Sbjct: 409 -LLDAEHYLAAPRFASRLP-DEMKNHIREYGIRNSHLLSIAPTGTISLAFADNASNGIEP 466 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ Y + D T K + D A + G++ +P+ Sbjct: 467 AFSWFYTRKKRMMDGTS---------KDYSVEDHAW----RVFKKQGGDVSHLPEAF--- 510 Query: 845 HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 +A EI + ++ + +ID ++++N+ D P + +Y +AW GLK Sbjct: 511 -VSALEIPALDHMKMCAAVAPYIDTSISKTVNVPADYPF-EDFKNLYTEAWRAGLKGLAT 568 Query: 903 LRSRS 907 R S Sbjct: 569 YRPNS 573 >gi|320450284|ref|YP_004202380.1| ribonucleoside-diphosphate reductase subunit alpha [Thermus scotoductus SA-01] gi|320150453|gb|ADW21831.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermus scotoductus SA-01] Length = 556 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 168/588 (28%), Positives = 250/588 (42%), Gaps = 106/588 (18%) Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 T E + +F ++ + +TP N G + SC+ T V DD I A+ E M Sbjct: 48 TRIEGFSRKFQEYMAKGWYSLATPIWANYGLKRGLPISCYGTYVEDDTASILRAVAEIGM 107 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++K GG +R GA I NG+S G F + + NQG R+G AYL Sbjct: 108 MSKQGGGTSVYLGALRPRGAPIR-DNGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYL 166 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+EE+ +++ G+ I LF V+ W Sbjct: 167 PIEHPDLEEWFKIQREGGE-------------IQSLFWG-VSVGDAWL------------ 200 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E IA + +R+ W K+L E G P+I F+D N ++P Sbjct: 201 ----EEAIAGDREKRER----------------WAKVLKSRTEVGIPYIFFRDNANRQAP 240 Query: 573 Q--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + +G +H+SNLCTEI L S EE+ VC L S+NLL FD K + T Sbjct: 241 EVFKKLGKTIHASNLCTEIMLPSGPEESFVCCLSSLNLL------HFDEWKDTDAVETLT 294 Query: 630 RVLDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 LD+V+D +E+A + +RAIG+G++G+ S L IP + EA+ + Sbjct: 295 IFLDSVLDDFIEKAEGIPYMERAVRFAKRYRAIGIGVLGWHSYLQSKGIPLENAEALFLN 354 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 + + F I E A S W + P D + L E Sbjct: 355 N-----LIFKTIREKAEEA-----------SRWLRKRHPEDELADLME------------ 386 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802 RN+ +AIAPT + + I G VS SI+P N Y+K Sbjct: 387 --------------RRNATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKARIAFR 432 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + FL L+ + +E + + +GS+ +++ + D+ K + T EI L+ A Sbjct: 433 SPFLEELLQAKGKNEEKVWRSILERNGSVQHLDFLSDEEKDVFKTFSEISQKTLVNLAIA 492 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 RQK+IDQ QSLNL + E K ++ +Y AW GLK YY S SA Sbjct: 493 RQKYIDQGQSLNLVIHPEAPPKDVNELYLHAWRGGLKALYYQFSASAA 540 >gi|317121176|ref|YP_004101179.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermaerobacter marianensis DSM 12885] gi|315591156|gb|ADU50452.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermaerobacter marianensis DSM 12885] Length = 881 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 160/623 (25%), Positives = 265/623 (42%), Gaps = 94/623 (15%) Query: 300 ILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCST 355 + DRY +G +E P+ + RVA +A E ++ E F L F F+ Sbjct: 10 VFLDRYARKGPDGKPVESSPEEMWDRVARAIAEVEEPGQREVWERRFRQALEGFKFVPGG 69 Query: 356 PTLFNSGTRHP-QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 L +GT + +C++ P+D GI + + GG+G + + +R G + Sbjct: 70 RILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGTY 129 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + G NG + G + + +V + +V QGG R+GA+ L+ H D+EEF+ +++ D Sbjct: 130 VRGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----DL 185 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + + N + I D FM+ V Q+ W L + Sbjct: 186 TKITNANLSVCISDAFMEAVQQDLPWDL-----------------------------KWN 216 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 KV++ + A LW + + +G P + F + N RS + ++ N C E L Sbjct: 217 GKVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPCGEQPLGP- 275 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHT 652 VCNLG+INL A + D + L T+ AVR LDNVID + E K + Sbjct: 276 ---WGVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATEYFFPENEKAQRYG 332 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R IGLG MG L L I Y S +A E+ D+ I A S LA+E+GA+ F Sbjct: 333 VRRIGLGTMGLADMLIKLRIRYGSEKAFEVCDQVYRLIRDEAYRTSALLAKEKGAFPWFD 392 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + QG F RLP +++++ + G+RN + APT T Sbjct: 393 KEKYLQGWF-------------------IQRLP-EDIRQLIAQHGIRNGFLLTQAPTGTT 432 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + GVS I+P + + +++ +G V YH+ Sbjct: 433 SLLAGVSSGIEPVFAFSFKRTDRTGTHIV------------------------YHELYKE 468 Query: 833 NIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI--- 888 +E+ PD+ + +A ++ P + + Q+++D S++ ++ P +D + Sbjct: 469 WLEKHPDEPVPDYFVSADQLTPEEHVRMQAIIQQYVD--ASISKTVNAPREHTVDQVRTL 526 Query: 889 YRQAWLMGLKTTYYLRSRSATSV 911 YR A+ +G K Y R S V Sbjct: 527 YRLAYELGCKGITYYRDGSREGV 549 >gi|50914443|ref|YP_060415.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10394] gi|50903517|gb|AAT87232.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10394] Length = 719 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDTQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749 S +A+ER + F+ S + D F G D + ++ + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|71903781|ref|YP_280584.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS6180] gi|71802876|gb|AAX72229.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS6180] Length = 719 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749 S +A+ER + F+ S + G F G D + ++ + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|294505969|ref|YP_003570027.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter ruber M8] gi|294342297|emb|CBH23075.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter ruber M8] Length = 560 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 162/584 (27%), Positives = 243/584 (41%), Gaps = 113/584 (19%) Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 E + A FY ++ ++ ++P N G SCF + + D + I E M+ Sbjct: 53 EMDGFADRFYEYMARGYYSLASPVWANFGLDRGLPISCFGSYIDDSMEAILDTHAEVGMM 112 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 K GG + VR GA I NG S G PF ++ + V+QG R+G Y++ Sbjct: 113 TKVGGGTSGYFGDVRPRGASIT-NNGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYID 171 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DVEE+L+++ T D +T M V W D SD Sbjct: 172 IEHPDVEEWLNIQ--TEGDAIQT------------MMYGVVVGDDWMEAMIDGDSDKR-- 215 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 ALW K++ G P+I F+ PQ Sbjct: 216 ------------------------------ALWAKVVESRMNLGIPYILFRGNVQDGRPQ 245 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 + VH+SNLC+E+ L S +E+ VC L S+N L +D K + T + Sbjct: 246 VYKDKGYDVHASNLCSEVLLPSGPDESFVCCLSSMNAL------HYDDWKDTDAVETLTQ 299 Query: 631 VLDNVIDINCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYASPEAVE 681 LD V+ I+ AK H HRAIG+G++G+ S L IP+ S EA Sbjct: 300 FLDAVMQ---EFIDGAKGMAHMDRAVRFAERHRAIGIGILGWHSYLQSNRIPFESAEASL 356 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 E + I + +AS ELA G +G Sbjct: 357 TGAEIAKTIKERSYAASAELADRFGEPPVLEG---------------------------- 388 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800 G RN+ MA+APT + + I G VS SI+P N +V+ T Sbjct: 389 --------------YGRRNATTMAVAPTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVT 434 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 N L L+++ +A+ ++ DGS+ +++ + D+ K + T EI M +I+ A Sbjct: 435 YKNPHLKALLQEKGRDTDAVWDEIALRDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQA 494 Query: 861 SRRQKWIDQAQSLNLYLDEPSG--KKLDFIYRQAWLMGLKTTYY 902 + RQK IDQ+QSLNL +D S K ++ +Y +AW G+K+ YY Sbjct: 495 AGRQKHIDQSQSLNLAIDPGSTPVKDINRLYVEAWKKGVKSLYY 538 >gi|149914029|ref|ZP_01902561.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. AzwK-3b] gi|149812313|gb|EDM72144.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. AzwK-3b] Length = 759 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 158/593 (26%), Positives = 257/593 (43%), Gaps = 92/593 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + + +FY L F ++ + +GT R L +CF + T+PDD+ Sbjct: 37 RIARALAAVEDDPKLWEQKFYAALEDFKYLPAGRITAGAGTGRSVTLFNCFVMGTIPDDM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + + G + F+ V + + Sbjct: 97 GGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAEVKSVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ + D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFIAAKA----DAARLRMFNLSVLVTDDFMEAVKADGPWE 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L EF KV+R + A LW +++ ++ P Sbjct: 213 L---------------EFGG--------------KVYRTVEARDLWNRIMQATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + + ++N C E L C LGSIN+ A + F Sbjct: 244 VIFIDRINAANNLNYCETISATNPCGEQPL----PPYGACLLGSINM-ARLVTDPFGPEA 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D D L + AVR++DNV+D + +E + R IGLG+ G AL ++ + Y Sbjct: 299 ALDEDALDDLVAVAVRMMDNVVDASRFPLEAQAREAEAKRRIGLGVTGLADALLMVGLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS--IGLLAEV 732 S EAV + + I+ A ASV+LA+E+G + L+D G F G+ A+V Sbjct: 359 GSDEAVAQTEAWLHQIARAAYLASVDLAREKGPF-----PLFDAGAFLASGNMRGMDADV 413 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791 R+ +A + G+RN+ +IAPT TI+ G VS I+P + Y Sbjct: 414 REAIAEH-----------------GIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYSYT 456 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + + D + +V+ Q +W E K+ D DL A + Sbjct: 457 RKVLQKDGSRTEEEVVDYAVQ--MWRE------KFGDA----------DLPDYFVNAQTL 498 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901 P ++ + Q+W+D + S + G + +Y QA+ G K TTY Sbjct: 499 APQDHVKMQAAAQRWVDSSISKTINCPADIGFEAFKDVYMQAYETGCKGCTTY 551 >gi|310641425|ref|YP_003946183.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] gi|309246375|gb|ADO55942.1| Ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] Length = 694 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 153/585 (26%), Positives = 267/585 (45%), Gaps = 66/585 (11%) Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT N+G +R +L SCFL + D L I L L+K GG+ + + +R G Sbjct: 145 ATPTFLNAGKSRRGELVSCFLLEMDDSLNSINYVLNTCMQLSKIGGGVAVNLSKLRSRGE 204 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G ++G++P LK+ D +Q G+RKG+ AY + DV EFLD +K D+ Sbjct: 205 AIKGVEGAAKGIMPVLKLMEDGFSYADQMGQRKGSGAAYYNIFGWDVLEFLDSKKINADE 264 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R R ++ +P+ F K N +F+P V + + + ++ E Y+ Sbjct: 265 RVRLKTLSIGLLVPNRFYKLAQDNEPLHVFAPYSVFKAYGTHLDDMDLD-EMYDTLLADD 323 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +K +SA + K+ + E+G+P+I K N ++VG + SNLCTEI Sbjct: 324 RVKKKIAMSARDMLTKIAMIQLESGYPYIMNKSNANQAHALKNVGQIKMSNLCTEIFQLQ 383 Query: 593 SSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-- 638 + E A CNL S+N++ N ++ K+ ++ + L +V D+ Sbjct: 384 ETSEIADYGQQDIIRRDVSCNLASLNIV-----NVMEHGKIRESVHEGMIALTSVSDMTQ 438 Query: 639 --NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N + KA + H+ +GLG+M L I Y S EA + +++H+I Sbjct: 439 VANAPGVAKANREMHS---VGLGVMNLHGYLAKNKIAYESNEAKDFVRTFFMTMNYHSIE 495 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNRTSRLPWDEL 749 S+E+A+ G ++ F+ S + GV+ D A V++ + ++ WD L Sbjct: 496 KSMEIAKAAGQSFYGFEESDYATGVYFDRYLNTDYRPTTARVQELFKDIYIPTQADWDTL 555 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 K V G+ ++ MAIAPTA+I+ I + S+ P +V + Sbjct: 556 KADVMKNGLYHAYRMAIAPTASISYIQNATSSVMP---------------------IVEQ 594 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 ++ R + + Y + D + +A+++D +++ + Q +DQ Sbjct: 595 IETRTYANSTTYYPMPY----------LQKDNVFFYKSAYQMDQFKVLDLIAEIQPHVDQ 644 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 S L+++ + + ++L Y A GLK+ YY R++ SVE+ Sbjct: 645 GISTVLHVNSDVTTRQLARCYLYAAHKGLKSLYYTRTKK-LSVEE 688 >gi|307727744|ref|YP_003910957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1003] gi|307588269|gb|ADN61666.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1003] Length = 859 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 164/602 (27%), Positives = 267/602 (44%), Gaps = 80/602 (13%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPD 378 F RVA G+A E E + +VE + + H + ++ L +CF+ V D Sbjct: 51 FRRVAHGVAAAEPEALRESVEALFVDNLRHGALGAGRIMSAAGSGIAATLINCFVQPVGD 110 Query: 379 --------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L GI+ AL + A + GG+G +++ +R GA +H T+ + G ++ V Sbjct: 111 AIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPCSYMDV 170 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + D FM Sbjct: 171 FDASCRTVESAGSRRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNVSVGVTDQFM 226 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + V +N W L E S G RQ D G + V+ + A +W +++ Sbjct: 227 RAVEENELWQLVHRAEPSPALRAAGDM---------RQRDDG-MWVYSERPAREIWDRIM 276 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607 ++ P I F N + + V + ++N C E L + CNLG +NL Sbjct: 277 RSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPLNLTRF 332 Query: 608 -LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L FA FD+D LA RT VR LDNV+D+ + + + R IG+G Sbjct: 333 VLEPFAQLKGRKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRIGVGFT 392 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720 G L +L + Y S E + A + A ASVELA+ERGA+ F + + G Sbjct: 393 GLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAKRYLEPGT 452 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778 F SRLP D LK ++ G+RNS+ ++IAPT T+ A Sbjct: 453 F-------------------ASRLPED-LKDAIRRDGIRNSHLLSIAPTGTVSLAFADNA 492 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++ Y + + D + +F V + R L+ E G++ R+P Sbjct: 493 SNGIEPAFSWTYKRMKVMADGS-RETFDVEDYAYR-LYRELG-----------GDVSRLP 539 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896 D +A E+ ++ + Q ++D ++++N+ D P + + +Y AW G Sbjct: 540 D----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYFDAWKSG 594 Query: 897 LK 898 LK Sbjct: 595 LK 596 >gi|94994622|ref|YP_602720.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10750] gi|94548130|gb|ABF38176.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10750] Length = 719 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKTNPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749 S +A+ER + F+ S + D F G D + ++ + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|313890803|ref|ZP_07824428.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120904|gb|EFR44018.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 719 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 177/672 (26%), Positives = 291/672 (43%), Gaps = 99/672 (14%) Query: 281 LANDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEK 337 LA LK E +F F+ ++ Y +Y L N +E + M A+ A E K Sbjct: 82 LATILKSE-NFRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYYADGNEELAK 140 Query: 338 R-AVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 AVE N + +TP+ N+G +R +L SCFL V DD+ I ++ L++ Sbjct: 141 DLAVEMINQ----RYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSR 196 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL + Sbjct: 197 IGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIF 256 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ FL +K D++ R ++ +PD F + N LFSP ++ Sbjct: 257 HPDIIAFLSTKKENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYDIE------- 309 Query: 516 KEFEIAY------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +E+ IA+ E Y+ I K+ A L ++ + E+G+P+I D N Sbjct: 310 REYGIAFNYIDITEKYDELVANPNITK-TKLRARDLETEISKLQQESGYPYIINIDTANK 368 Query: 570 RSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFD 617 +P G + SNLC+EI +N + E + CNLGS N+L + F Sbjct: 369 TNPID--GKIIMSNLCSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSPDF- 425 Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +I+ R L V D + + K N GLG MG S L HI Y S Sbjct: 426 ----GRSIKAMTRALTYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGS 481 Query: 677 PEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF--------PIDSIG 727 PE++E D +++ + S +A+ER + F+ S + G + I Sbjct: 482 PESIEFTDIYFMLMNYWTLVESNNIARERHTTFVGFEKSQYADGTYFDKYVTGQFIPKSD 541 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L+ E+ + + S W L++ V+ G+ + N +A+AP +I+ I S SI P Q Sbjct: 542 LVKELFKNHFIPQAS--DWQALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQ 599 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + E +Q E I + Y + + + IP + + Sbjct: 600 RI-------------------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTS 629 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAW 893 A+++D +I+ + + +DQ SL L+L + + + L + A+ Sbjct: 630 AYDMDMRKVIDVYAAATQHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAF 689 Query: 894 LMGLKTTYYLRS 905 G+K+ YY+R+ Sbjct: 690 NKGIKSIYYVRT 701 >gi|329575045|gb|EGG56597.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1467] Length = 591 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 156/593 (26%), Positives = 267/593 (45%), Gaps = 80/593 (13%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G R +L SCFL V DD+ I + L++ GG+G + +R Sbjct: 23 YQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSFNSALQLSRIGGGVGITLSNLRE 82 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL +K Sbjct: 83 AGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKKEN 142 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + N LFSP V + + +I E Y+ Sbjct: 143 ADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDNLV 201 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 I+ RKI A L ++ E+G+P+I D N +P G + SNLC+EI Sbjct: 202 ANPNIRK-RKIKARDLENEISKSQQESGYPYIINIDTANKNNPID--GKIIMSNLCSEIL 258 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N E + CNLGS N++ N + ++R R L V D Sbjct: 259 QVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMESPDFGKSVRAMTRALTFVTD 313 Query: 638 IN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 + TI+ + +HT IGLG MG + H+ Y S E+++ D +++ Sbjct: 314 ASEIDVVPTIQNGNRLSHT---IGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYW 370 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----W 746 + S ++A+ER + + + S + G + I G D++ + + ++P W Sbjct: 371 TLMESNQIAKERNQVFHNLEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDW 430 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+ VK G+ + N +A+AP +I+ I S SI P + Sbjct: 431 AALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHP---------------------I 469 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +++R E I + Y + N + IP + +A+++D +I+ + Q+ Sbjct: 470 TRMIEER---QEKKIGKIYYPAPYLAN-DTIP-----YYTSAYDMDMRKVIDVYATAQQH 520 Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ + P G + L+ + A+ G+K+ YY+R+ Sbjct: 521 VDQGMSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 573 >gi|46092514|dbj|BAD14377.1| hypothetical protein [Solanum melongena] Length = 169 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G+IP L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G Sbjct: 1 YIRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDLRKNHGK 60 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + R D+ A W+PDLFM+RV N W+LF P+E L D +G++FE Y YER+ Sbjct: 61 EEHRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGEDFEKLYTKYEREG-- 118 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K + + A LW ++L ETG P++ +KD CN +S QQ++G + SSNLC Sbjct: 119 ---KAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLC 169 >gi|21910585|ref|NP_664853.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS315] gi|28895724|ref|NP_802074.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes SSI-1] gi|21904786|gb|AAM79656.1| putative ribonucleoside-diphosphate reductase 2 alpha subunit [Streptococcus pyogenes MGAS315] gi|28810973|dbj|BAC63907.1| putative ribonucleotide reductase alpha-chain [Streptococcus pyogenes SSI-1] Length = 719 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749 S +A+ER + F+ S + G F G D + ++ + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|254449519|ref|ZP_05062956.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 238] gi|198263925|gb|EDY88195.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 238] Length = 753 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 162/600 (27%), Positives = 262/600 (43%), Gaps = 102/600 (17%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378 + R+A LA E + + +FY L+ F ++ + +GT R L +CF + T+PD Sbjct: 35 WARIAKSLASVEKDPKAWEPKFYEALNDFRYLPAGRITAGAGTDRSVTLFNCFVMGTIPD 94 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 95 TMGGIFDALREAALTMQQGGGIGYDFSTIRPKGAVVKGVAADASGPLSFMDVWDAMCRTI 154 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 G R+GA+ A + H DVE+F+ + D R N + I D FM+ V + Sbjct: 155 MSAGSRRGAMMATMRCDHPDVEDFITAKS----DAARLRMFNMSVLITDPFMEAVKADKP 210 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L E R + A ALW ++ + Sbjct: 211 WNLVWAGET-----------------------------VRTVQARALWDSIMQSTYSHAE 241 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616 P + F D N + +V + ++N C E L C LGSINL A +N F Sbjct: 242 PGVIFIDRINTMNNLNYVETIAATNPCGEQPL----PPYGACLLGSINL-ARLVSNPFTD 296 Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +LA + AVR++DNV+D + +E + R IGLG+ G AL + + Sbjct: 297 TATIDDAELAELVGLAVRMMDNVVDASKFPLEAQAREAAAKRRIGLGVTGLADALLMTGL 356 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y S +A + M+ I+ A +SV+LA+E+GA+ F D+ LA Sbjct: 357 RYGSEDAARQTEAWMKAIARAAYLSSVDLAREKGAFPLF------------DADKYLAS- 403 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791 + + M+ D+++ ++ G+RN+ ++APT TI+ G VS I+P + Y Sbjct: 404 GNMMQMD-------DDVRDAIREHGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAYAYT 456 Query: 792 KSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATA 848 + + D + +V+ + RDL +A + D N + +P D ++ A A Sbjct: 457 RKVLQKDGSRTEEEVVDYAVKMWRDLKGDAELPDY------FVNAQTLPAMDHVRMQAAA 510 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY 901 QKWID + S + + E +DF +Y AW G K TTY Sbjct: 511 ---------------QKWIDSSISKTINVPE----DIDFQSFKDVYMAAWDQGCKGCTTY 551 >gi|229090404|ref|ZP_04221647.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-42] gi|228692987|gb|EEL46705.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-42] Length = 563 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 140/508 (27%), Positives = 246/508 (48%), Gaps = 35/508 (6%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738 +++++I S+E+A+E+G + F S + G + D + +V+ + Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765 + ++ W++LK++V G+ N+ C A Sbjct: 533 HIPTKEDWNQLKRQVMEHGLYNALTCSA 560 >gi|301052990|ref|YP_003791201.1| ribonucleoside-diphosphate reductase subunit alpha, N-terminal domain-containing protein [Bacillus anthracis CI] gi|300375159|gb|ADK04063.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal domain protein [Bacillus cereus biovar anthracis str. CI] Length = 575 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 140/508 (27%), Positives = 246/508 (48%), Gaps = 35/508 (6%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625 V SNLCTEI L +SE CNLGS+N++ N + + + + + Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 V D I N T++KA H+ +GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484 Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AM 738 +++++I S+E+A+E+G + F S + G + + + E +L + Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTNYSPVTEKVQQLFEGI 544 Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765 + ++ W++LK++V G+ N+ C A Sbjct: 545 HIPTKEDWNQLKRQVMEHGLYNALTCSA 572 >gi|322374375|ref|ZP_08048889.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C300] gi|321279875|gb|EFX56914.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C300] Length = 719 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +++F F+ ++ Y++Y L N + ++ RV E A + N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEI 146 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + +I E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ KI A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382 Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI +N + E CNLGS N++ + F +IR VR L Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437 Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 V D + TI+ HT GLG MG S L I Y S E++E Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSHESIEFTSIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745 +++ + S +A+ERG + +F+ S + G F G D + + + +P Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + Sbjct: 555 AADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 E +Q E I + Y + + + IP + +A+++D +I+ + Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ D P G + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|306833074|ref|ZP_07466205.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus bovis ATCC 700338] gi|304424783|gb|EFM27918.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus bovis ATCC 700338] Length = 719 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 154/590 (26%), Positives = 263/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R + SCFL +V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL +K Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + N LFSP V + + +I E + A Sbjct: 271 ADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYVDITAEYDKMVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + +K KI A L ++ + E+G+P++ D N +P G + SNLC+E+ Sbjct: 331 NPNIVKT--KIRARDLETEISKLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N++ + F +I+ R L V D Sbjct: 387 QVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVSD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG + L HI Y SPE++E + +++ + Sbjct: 442 TSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLV 501 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----WDEL 749 S +A+ER + F+ S + G + I G D + + +P W +L Sbjct: 502 ESNHIARERKQTFVGFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDWAKL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V T G+ + N +A+AP +I+ I VS S+ P Q + E Sbjct: 562 RDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L D P G + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|260574979|ref|ZP_05842981.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sp. SW2] gi|259022984|gb|EEW26278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sp. SW2] Length = 761 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 164/598 (27%), Positives = 257/598 (42%), Gaps = 86/598 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 RVA LA E + FY L F F+ + +GT R L +CF + T+PD++ Sbjct: 37 RVARALAEVEAKPALWEDRFYAALEGFKFLPAGRITAGAGTGRTVTLFNCFVMGTIPDNM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF +L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFESLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H DVE F++ +K D R N + I D FM V + W Sbjct: 157 AGSRRGAMMATMRCDHPDVEAFIEAKK----DPARLRMFNLSVLITDAFMAAVKADGPWE 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L D KV++ A LW +++ ++ P Sbjct: 213 LCFGD-----------------------------KVYKTCQARDLWNRIMRNTYDFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + +V + ++N C E L C LGSIN LA +N F Sbjct: 244 VIFIDRINAMNNLAYVETIAATNPCGEQPL----PPYGACLLGSIN-LATLVSNPFAANA 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D L +RTAVR++DNV+D + + + R IGLG+ G AL +L + Y Sbjct: 299 ALDLAALDELVRTAVRMMDNVVDASRFPLPEQAVEAQAKRRIGLGVTGLADALLMLRLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S A + M+ I+ A ASV+LA+E+GA+ F D+ LA Sbjct: 359 GSDAAAAQTEAWMQAIARAAYLASVDLAREKGAFPLF------------DAEKYLA---- 402 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 + T R +++ ++ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 403 ----SGTMRQMDGDVRDAIRKHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYSRK 458 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D + +V+ + LW E D D + N + +P +D Sbjct: 459 VLQKDGSRTEEEVVDYAVR--LWRETH-GDAPLPDYFV-NAQTLP-----------PLDH 503 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +W+ +A QKW+D + S + E S +Y AW G K R + T Sbjct: 504 VWMQAAA---QKWVDSSISKTINCPEDISFDDFQQVYMAAWDQGCKGCTTYRPNAVTG 558 >gi|139473585|ref|YP_001128301.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes str. Manfredo] gi|134271832|emb|CAM30067.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes str. Manfredo] Length = 719 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--AMNRTSRLP----WDEL 749 S +A+ER + F+ S + G + + + +L ++ + +P W L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVAKSDLVKSLFKDHFIPQASDWKAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|15675307|ref|NP_269481.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes M1 GAS] gi|71910936|ref|YP_282486.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS5005] gi|13622485|gb|AAK34202.1| putative ribonucleotide reductase alpha-chain [Streptococcus pyogenes M1 GAS] gi|71853718|gb|AAZ51741.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS5005] Length = 719 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749 S +A+ER + F+ S + G + + + +L + + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|209559613|ref|YP_002286085.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes NZ131] gi|209540814|gb|ACI61390.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Streptococcus pyogenes NZ131] Length = 719 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749 S +A+ER + F+ S + G + + + +L + + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|94990702|ref|YP_598802.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10270] gi|94544210|gb|ABF34258.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10270] Length = 719 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749 S +A+ER + F+ S + G + + + +L + + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|227513707|ref|ZP_03943756.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus buchneri ATCC 11577] gi|227522502|ref|ZP_03952551.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus hilgardii ATCC 8290] gi|227083026|gb|EEI18338.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus buchneri ATCC 11577] gi|227090324|gb|EEI25636.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus hilgardii ATCC 8290] Length = 721 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 159/658 (24%), Positives = 290/658 (44%), Gaps = 82/658 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 ++DF F+ ++ Y +Y L N + + ++F RVA E+ A+ + + Sbjct: 88 DQDFHFKSFMAAYKFYAQYALKTNDNDKYL-ESFLDRVAANALFFADGDEQLAMNLADEI 146 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G ++ + SCFL DD+ I + L++ GG+G + + Sbjct: 147 IHQRYQPATPSFLNAGRQNRGEFVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGINLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLRAAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523 +K D++ R ++ +PD + + V +A LFSP D+ YG F + Sbjct: 267 KKENADEKIRLKTLSLGVTVPDKYYELVKADADMYLFSP---YDVEREYGVPFSYVDITK 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ +IK K+ A L ++ + E+G+P+I D N +P G + SN Sbjct: 324 EYDHLVANDKIKK-TKVKARDLETEISKLQQESGYPYIINIDTANRENPID--GRIVMSN 380 Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI T+++ + CNLGS N+ N + ++ + VR Sbjct: 381 LCSEILQVQTPSTVDNEQHYIKLGKDISCNLGSTNIA-----NMMNATNFGHSVESMVRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D N + + N +IGLG MG S H+ Y SPE++E + Sbjct: 436 LTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGLHSYFAKSHMHYGSPESIEFTSVYFMLL 495 Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-LLAEVRDEL-----AMNRTSR 743 ++ ++ AS ++A+ER + +F+ S + G + + A D++ + + Sbjct: 496 NYWSLVASNKIAKERHQTFDNFEKSKYADGTYFDKYLNHSYAPQSDKVKQLFHGITIPTN 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W LKK V G+ + N +A+AP +I+ I + S+ P Sbjct: 556 EDWVALKKAVMEDGLYHQNRLAVAPNGSISYINDTTASLHP------------------- 596 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 ++N +++R E+ I + Y + N D + +A+++D +I+ + Sbjct: 597 --IINRIEER---QESKIGKIYYPAPYLSN------DTMPYYTSAYDMDMRKVIDIYAAA 645 Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 Q +DQ +L L++ D+ + + L+ + A G+K+ YY+R+ Sbjct: 646 QVHVDQGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAHRKGIKSIYYIRT 703 >gi|126700616|ref|YP_001089513.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium difficile 630] gi|115252053|emb|CAJ69889.1| Ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase large subunit) [Clostridium difficile] Length = 699 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 174/707 (24%), Positives = 314/707 (44%), Gaps = 100/707 (14%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---------------------FA 292 E YIEE ++ +L + ++ L YL ++ Y ++ F Sbjct: 26 EALSSYIEEFIQPKLRKFNNLEERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHKFE 85 Query: 293 FE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFH 350 F+ Y+ + Y Y L N + E+ + + +V + L L K+ A+ + + Sbjct: 86 FQSYMSVNKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGNKD-LALNLADKIVKQE 143 Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G R ++ SCFL +V D GI A+ + L+K GG+ + + +R Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G I G + GV+ K+ + NQ G R+G+ YL +H D E +D +K Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD FM+ +N F P V + + E E+ E Y++ Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDKLV 322 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC EI Sbjct: 323 NDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCEIF 381 Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + E CNLGS+N+ N D + ST+ TA+R L V D Sbjct: 382 QYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + SN +IGLG M L +I Y S +A++ ++ + +++I Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL----------- 744 AS+++A ER + F S + +G + +L++ ++ + ++ ++ Sbjct: 497 ASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552 Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W +L VK G+ N+ MA+APT +I+ + + SI P + + V++ GD T + Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDSTTI 610 Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 FL N+ ++ Y+ +A+ +D +I+ Sbjct: 611 YPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVIDLV 639 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S L++ DE + + + Y A+ GLK+ YY R++ Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|255307976|ref|ZP_05352147.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile ATCC 43255] Length = 699 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 174/707 (24%), Positives = 314/707 (44%), Gaps = 100/707 (14%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---------------------FA 292 E YIEE ++ +L + ++ L YL ++ Y ++ F Sbjct: 26 EALSSYIEEFIQPKLRKFNNLEERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHKFE 85 Query: 293 FE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFH 350 F+ Y+ Y Y L N + E+ + + +V + L L +K+ A+ + + Sbjct: 86 FQSYMSANKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGDKD-LALNLADKIVKQE 143 Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G R ++ SCFL +V D GI A+ + L+K GG+ + + +R Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G I G + GV+ K+ + NQ G R+G+ YL +H D E +D +K Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD FM+ +N F P V + + E E+ E Y++ Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDKLV 322 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC EI Sbjct: 323 NDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCEIF 381 Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + E CNLGS+N+ N D + ST+ TA+R L V D Sbjct: 382 QYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + SN +IGLG M L +I Y S +A++ ++ + +++I Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL----------- 744 AS+++A ER + F S + +G + +L++ ++ + ++ ++ Sbjct: 497 ASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552 Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W +L VK G+ N+ MA+APT +I+ + + SI P + + V++ GD T + Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDSTTI 610 Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 FL N+ ++ Y+ +A+ +D +I+ Sbjct: 611 YPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVIDLV 639 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S L++ DE + + + Y A+ GLK+ YY R++ Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|227510691|ref|ZP_03940740.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189812|gb|EEI69879.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 721 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 159/658 (24%), Positives = 290/658 (44%), Gaps = 82/658 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 ++DF F+ ++ Y +Y L N + + ++F RVA E+ A+ + + Sbjct: 88 DQDFHFKSFMAAYKFYAQYALKTNDNDKYL-ESFLDRVAANALFFADGDEQLAMNLADEI 146 Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G ++ + SCFL DD+ I + L++ GG+G + + Sbjct: 147 IHQRYQPATPSFLNAGRQNRGEFVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGINLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLRAAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGA 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523 +K D++ R ++ +PD + + V +A LFSP D+ YG F + Sbjct: 267 KKENADEKIRLKTLSLGVTVPDKYYELVKADADMYLFSP---YDVEREYGVPFSYVDITK 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ +IK K+ A L ++ + E+G+P+I D N +P G + SN Sbjct: 324 EYDHLVANDKIKK-TKVKARDLETEISKLQQESGYPYIINIDTANRENPID--GRIVMSN 380 Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI T+++ + CNLGS N+ N + ++ + VR Sbjct: 381 LCSEILQVQTPSTVDNEQHYIKLGKDISCNLGSTNIA-----NMMNATNFGHSVESMVRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D N + + N +IGLG MG S H+ Y SPE++E + Sbjct: 436 LTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGLHSYFAKSHMHYGSPESIEFTSVYFMLL 495 Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-LLAEVRDEL-----AMNRTSR 743 ++ ++ AS ++A+ER + +F+ S + G + + A D++ + + Sbjct: 496 NYWSLVASNKIAKERHQTFDNFEKSKYADGTYFDKYLNHSYAPQSDKVKQLFQGITIPTN 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W LKK V G+ + N +A+AP +I+ I + S+ P Sbjct: 556 EDWVALKKAVMEDGLYHQNRLAVAPNGSISYINDTTASLHP------------------- 596 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 ++N +++R E+ I + Y + N D + +A+++D +I+ + Sbjct: 597 --IINRIEER---QESKIGKIYYPAPYLSN------DTMPYYTSAYDMDMRKVIDIYAAA 645 Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 Q +DQ +L L++ D+ + + L+ + A G+K+ YY+R+ Sbjct: 646 QVHVDQGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAHRKGIKSIYYIRT 703 >gi|238059797|ref|ZP_04604506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora sp. ATCC 39149] gi|237881608|gb|EEP70436.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora sp. ATCC 39149] Length = 611 Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 168/617 (27%), Positives = 256/617 (41%), Gaps = 107/617 (17%) Query: 313 RIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 RIE RVA GL E E A F L++ F S L N GTR Sbjct: 30 RIESVDDLLDRVATGLGAVEREYGADESTARVWAARFRALMAENRFWPSGRILNNCGTRQ 89 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGV 424 QL+SCF+ V DDL IF L+ A + GG G D TP+R GA I S G Sbjct: 90 GQLASCFVLPVEDDLGAIFDTLKLAASCHRTGGGTGFDLTPLRERGAPISTAEAAGSSGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 + +L + + V QGGK +GA A L H DV EF+D + G R + N + Sbjct: 150 VSWLHLFDAETGVVMQGGKMRGANLASLSVRHPDVFEFIDAKAVVG----RLANFNLSVT 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM+ TL E+ + + G+ R++ A Sbjct: 206 VDDAFMR--------TLIDGGEIDLVSPVGGRPR-------------------RRVPAAE 238 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +WR++ + TG P + F D N +P +G + ++N C E TL T LG Sbjct: 239 IWRRISAQAWRTGDPGLLFTDMINRANPLLDRLGPIRTTNPCGEQTLYPYEPST----LG 294 Query: 604 SINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S+NL A + + D +L T+ AVR+LDN ID + + + +R +GLG+MG Sbjct: 295 SVNLRAMTGPDGRLDTARLERTVEDAVRLLDNSIDASHYPDPRITAMARGNRRLGLGVMG 354 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 F L L + Y S A+ + DE I A + + LA ERG + +F + +D V Sbjct: 355 FADLLIALGVRYDSTRALAVVDEVGGRIRAVAEATTRRLAAERGTFPNFDPARFDAPV-- 412 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 RN IAPT TI+ + G S I Sbjct: 413 ------------------------------------RNCAVTTIAPTGTISMVAGCSSGI 436 Query: 783 DPSYQNLYVKSNM-SGDFTVVNSFL---------VNELKQRDLWDEAMISDLKYHDGSIG 832 +P + ++ K+ + G + V+ L V+ + R L E +++L Sbjct: 437 EPRFAPIWRKNVLVDGGVSYVDEDLAADVCAHGGVDPEQARRLIRERPVTELP------- 489 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYR 890 +P+ ++ + A ++ W + A++ Q+ ID A +++NL D S + + Sbjct: 490 ----MPEPVRDRYRYAHDVPGEWHVRIAAQWQRHIDNAVSKTVNLPRDC-SVDDVAEVLT 544 Query: 891 QAWLMGLKTTYYLRSRS 907 +W +G K R S Sbjct: 545 ASWRLGCKGVSVYRQGS 561 >gi|73748165|ref|YP_307404.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] gi|73659881|emb|CAI82488.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] Length = 585 Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 155/580 (26%), Positives = 254/580 (43%), Gaps = 85/580 (14%) Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGT 363 +GS E P+ F RVA +A E ++ A EFY +++ F+ ++PTL N+G Sbjct: 21 DGSITESPEDMFRRVADAVAAAENAYNQQGKAACWADEFYRMMTGLEFLPNSPTLLNAGR 80 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 LSSCF+ V D + GI A+ E ++ +Y GG G + +R I + + G Sbjct: 81 ELGLLSSCFVLPVEDSVEGIAKAIGEAMIIHQYGGGTGFAFDTIRPEDTPIKSGHNVAGG 140 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 + + V ++ A + Q G R G A L H D+ +F+ + D+ + + Sbjct: 141 PVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DEGNHSANFGINI 196 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 + D F+++V + + L +P GE+ +SA Sbjct: 197 ALTDSFIQKVRRGEDYELINPRT-------------------------GEVT--GSLSAS 229 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 ++ ++ +ETG P I F D N +P +G +++ C L T LG Sbjct: 230 DVFYRIAQSAWETGDPGIMFIDRINKDNPTPQLGEFVTTDPCGGQPLLPYESAT----LG 285 Query: 604 SINL--LAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +INL +A N F DY +L I A+R LD+V+++N + I + +++ R IGLG Sbjct: 286 TINLSLMALKEGNCFGVDYLRLGKLIAKAIRFLDDVLEVNRYPIPEVERAAKATRKIGLG 345 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ- 718 MGF L L I Y S +AV +AD M F++ AS ELA ERG++ +F G+++ + Sbjct: 346 FMGFAEMLIKLGIRYDSEQAVSLADRLMTFVNETVNKASEELALERGSFPAFAGNIYAKS 405 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G P RN+ C+ T T + I Sbjct: 406 GAKP-----------------------------------RRNATCLTFTNTGTTSIIADT 430 Query: 779 SQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S I P Y + V++ + G + +N ++R ++ +I L + S N I Sbjct: 431 SVGIHPIYSLVMVRNILDGQRLLDINHTFEETARERGFFNPVLIEKLLTGE-SPQNCPEI 489 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNL 875 P D +++ TA +I P W I + QK D A Q++N Sbjct: 490 PRDYRRLLVTARDIQPEWCIRVQAAFQKHTDNAISQTVNF 529 >gi|94988800|ref|YP_596901.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS9429] gi|94992685|ref|YP_600784.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS2096] gi|94542308|gb|ABF32357.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS9429] gi|94546193|gb|ABF36240.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS2096] Length = 719 Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 157/590 (26%), Positives = 260/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749 S +A+ER + F+ S + G F G D + ++ + +P W L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAEDWKAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|19746347|ref|NP_607483.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS8232] gi|19748542|gb|AAL97982.1| putative ribonucleotide reductase alpha-chain [Streptococcus pyogenes MGAS8232] Length = 719 Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 260/590 (44%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+T R L V D Sbjct: 387 QVQTPSLVNDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749 S +A+ER + F+ S + G + + + +L + + +P W L Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWKAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|296159883|ref|ZP_06842704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. Ch1-1] gi|295889866|gb|EFG69663.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. Ch1-1] Length = 858 Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 160/607 (26%), Positives = 275/607 (45%), Gaps = 90/607 (14%) Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA G+A E + +VE + L + M + T + L +CF+ Sbjct: 48 FKRVARGVAEAEPPALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 102 Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D L GI+ AL + A + GG+G +++ +R GA +H T+ + G Sbjct: 103 QPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 162 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + Sbjct: 163 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 218 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V ++ W L +H + A ++ ++ D + V+ + A A+ Sbjct: 219 TDDFMRAVEEDQPWQL--------VHRAEPSPAQRAADDVRQRED--GLWVYSERPARAI 268 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +++ ++ P I F N + + V + ++N C E L + CNLG + Sbjct: 269 WDRIMRSTYDIAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 324 Query: 606 NL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL + FA FD+D LA RT VR LDNV+D+ + + + + R I Sbjct: 325 NLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNVLDVTLWPLPQQYEESRAKRRI 384 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G L +L + Y S E + A + + A ASVELA+ERGA+ F + + Sbjct: 385 GVGFTGLGDTLVMLGLRYDSQEGRDFAVGIAQLMRDEAYRASVELARERGAFPLFDAARY 444 Query: 717 -DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G F SRLP D +K+ ++ G+RNS+ ++IAPT T+ A Sbjct: 445 LETGTF-------------------ASRLPED-IKQAIRRDGIRNSHLLSIAPTGTVSLA 484 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P++ Y + + D + SF V + R L+ E G+ Sbjct: 485 FADNASNGIEPAFSWTYTRMKVMADGS-RESFDVEDYAYR-LYRELG-----------GD 531 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 ++R+PD +A E+ ++ + Q ++D ++++N+ D P + + +Y Sbjct: 532 VDRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYFD 586 Query: 892 AWLMGLK 898 AW GLK Sbjct: 587 AWKNGLK 593 >gi|118586507|ref|ZP_01543951.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|118433071|gb|EAV39793.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus oeni ATCC BAA-1163] Length = 723 Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 152/604 (25%), Positives = 272/604 (45%), Gaps = 82/604 (13%) Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F +TP+ N+G R +L SCF+ DD+ I + L+K GG+G + + VR Sbjct: 152 RFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNVR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + G + GV+P +K+ D +Q G R+GA AYL +H DV FL +K Sbjct: 212 EAGASVMGLANMAGGVVPIMKLMEDVFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYE 526 D++ R ++ +PD F + + LFSP +D+ +YG F + Y+ Sbjct: 272 NADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSP---ADVEKVYGVPFNYVDLTKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 EIK + + A L ++ + E+G+P++ D N +P G V +SNLC+ Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPV--YGKVVTSNLCS 385 Query: 587 EIT-------LNSSSEETAV-----CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632 EI +N+ E T + CNLGSIN+ + H A D+ K T+ A+ + Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMMHTA----DFGKSVETMTRALTFV 441 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DI+ + + N AIGLG MG + L I Y +++ + ++ Sbjct: 442 SESSDISV--VPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVSLDFVNTFFLMTNY 499 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLP- 745 + + AS ++A+ERG ++ F+ S + G + D +V+ + + Sbjct: 500 YTLLASNQIAKERGESFFEFEKSDYANGKYFDKYLAKDWGPKTDKVKKLFSDYHVPTIED 559 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK+ V G+ N+ A+APT +I+ + + S+ P Sbjct: 560 WQRLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQP--------------------- 598 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 +V+ ++ R E M + Y + N E +P + +A+++D +I++ + Q+ Sbjct: 599 IVSRVEAR---AEGMTGRVFYPANGLSN-ETLP-----YYVSAYDLDQRKVIDTYAAAQE 649 Query: 866 WIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DQ ++ L++ D+ + + L + A+ G+K+ YY+R+ + Sbjct: 650 HVDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYNQGIKSIYYIRTFTDD 709 Query: 910 SVEK 913 + E+ Sbjct: 710 NTEQ 713 >gi|241116846|ref|XP_002401636.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes scapularis] gi|215493180|gb|EEC02821.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes scapularis] Length = 382 Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 196/389 (50%), Gaps = 51/389 (13%) Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591 KV K+ A LW K+LT ETG P++ F D N P+ H +G+ V SNLC+EITL Sbjct: 2 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 61 Query: 592 SS-----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + TAVC L S+NL ++ + D + + S + VL++ I+ T+ +A Sbjct: 62 TGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 120 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K S R++GLG+MGF S L + +P S + E+IS A AS+E+ +E+G Sbjct: 121 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADKASIEIGKEKG 180 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 V P D L R SN AI Sbjct: 181 -------------VCP-----------DALDAGSNERF----------------SNKTAI 200 Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 201 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 260 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L KK Sbjct: 261 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNISKKY 320 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 L+ I+ +AW G+K+ YY RS S +K Sbjct: 321 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 349 >gi|261408340|ref|YP_003244581.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. Y412MC10] gi|261284803|gb|ACX66774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. Y412MC10] Length = 883 Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 121/434 (27%), Positives = 210/434 (48%), Gaps = 35/434 (8%) Query: 368 LSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D G I L E + GG+G + + +R A + G NG S G + Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + WH DVE+F+ +++ G + + N + + Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMMNDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258 Query: 487 DLFMKRVTQNAGWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 + FMK V ++ W L PD D +L+ + + +++ R I ++ + A + Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPDYDELWDGDLD----KWKKAGRR--IIPYKTVKAREV 312 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ +++ P + F + N S + + +N C E L VCNL ++ Sbjct: 313 WHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAM 368 Query: 606 NLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + AN+ +D+LA+T R +VR LDNVID + E+ + + R +GLG MG Sbjct: 369 NLSKFYDEANHDVAWDELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGL 428 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + L+I Y SPE++E D+ FI+ A AS ++A+E+G++ +F L+ Q F Sbjct: 429 AELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGF-- 486 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +AEV E+A + V+ G RN + APT + + G S I+ Sbjct: 487 --MKNMAEVYPEVA-------------EAVRKKGARNVTVITQAPTGSTGTMVGTSTGIE 531 Query: 784 PSYQNLYVKSNMSG 797 P + Y + + G Sbjct: 532 PYFAFKYFRQSRLG 545 >gi|256422446|ref|YP_003123099.1| ribonucleotide-diphosphate reductase subunit alpha [Chitinophaga pinensis DSM 2588] gi|256037354|gb|ACU60898.1| ribonucleoside-diphosphate reductase, alpha chain [Chitinophaga pinensis DSM 2588] Length = 565 Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 155/576 (26%), Positives = 253/576 (43%), Gaps = 100/576 (17%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F ++ S+P N GT SCF +PD++ GI L E M K GG Sbjct: 67 FVEMIERGWMSLSSPIWANMGTERGLPISCFNVHIPDNIEGITHKLGEVIMQTKIGGGTS 126 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G+ + NGKS G + F+++ + ++QGG R+GA AY++ H D++E Sbjct: 127 AYFGGLRARGSAVT-DNGKSSGAVSFMRLFDTAMDTISQGGVRRGAFAAYMDIDHDDIQE 185 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL ++ D ++ +PD +M+ + D+ +E Sbjct: 186 FLSIK----DIGHPIQNLFYGVCVPDYWMQDMIDG---------------DMEKRE---- 222 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578 +W K+L + G P++ F D N PQ + + Sbjct: 223 -----------------------IWAKVLESRQQKGLPYLFFTDNVNRNKPQVYKDLNLA 259 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +++SNLC+EI L S+ +E+ +C L S+NL + D KLA+ AV V Sbjct: 260 INASNLCSEIMLPSTEDESFICCLSSMNLELYDEWKDTDAVKLATFFLDAVLQEFIVKTE 319 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 H + A + HRA+GLG++G+ S L I + +A ++ + I A A+ Sbjct: 320 GNHFLAAANRFAKRHRALGLGVLGWHSYLQKNMIAFEGMQAKQLTSIIFKDIRDKAEKAT 379 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 ELA G KG G Sbjct: 380 KELAWIYGEPEVLKG------------------------------------------YGR 397 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816 RN+ MAIAPT + + I G S I+P N Y K+ +S G+F N +L L+Q+ + Sbjct: 398 RNTTLMAIAPTTSSSAILGQTSPGIEPFSSN-YFKAGLSKGNFMRKNKYLKALLEQKGID 456 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +E + + GS+ ++E + + K + T EI + +++ A+ RQ +DQAQSLNL Sbjct: 457 NEDTWRSIMLNHGSVQHLEELTEHEKDVFKTFKEISQLEIVQQAAIRQTHVDQAQSLNLN 516 Query: 877 LDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + PS K+++ + +AW +G+KT YY RS+S + Sbjct: 517 I--PSNLPVKEVNRLLIEAWKLGVKTLYYQRSQSVS 550 >gi|76799234|ref|ZP_00781408.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 18RS21] gi|76585417|gb|EAO62001.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 18RS21] Length = 704 Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 144/525 (27%), Positives = 239/525 (45%), Gaps = 32/525 (6%) Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +++ F F+ ++ Y +Y L N + ++ RV E+ A + Sbjct: 87 FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145 Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + N LFSP + + + +I + Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 E A+ K KI+A L ++ + E+G+P+I D N +P G + SNL Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381 Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +N + E + CNLGS N+L + F +I+T R L Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D N + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745 + + S +A+ER + F+ S + G + + G D++ ++ +P Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI 601 >gi|86136293|ref|ZP_01054872.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. MED193] gi|85827167|gb|EAQ47363.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. MED193] Length = 765 Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 163/620 (26%), Positives = 270/620 (43%), Gaps = 89/620 (14%) Query: 296 LGLQILYDRY-FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 + QI +Y F +G+ I++ + + R+A LA E +FY L F ++ Sbjct: 8 IAAQIWDMKYRFKEADGTPIDVTVEDSWRRIARDLARAEDNPGVWEEKFYEALEDFKYLP 67 Query: 354 STPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + +GT R L +CF + TVPD + GIF L+E A+ + GG+G D++ +R G Sbjct: 68 AGRITAGAGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRG 127 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + G + G + F+ V + + G R+GA+ A + H DVE F+ + Sbjct: 128 ADVKGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEAFITAKS---- 183 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D R N + I D FM+ V + W E+ ++ Sbjct: 184 DSARLRMFNMSVLISDAFMEAVKADGSW-------------------ELQFDG------- 217 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 K++ + A LW K++ ++ P + F D N + ++ + ++N C E L Sbjct: 218 ---KIYHTVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPL- 273 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIEK 645 C LGSIN+ A +N F+ + + + TAVR++DNV+D++ +E Sbjct: 274 ---PPYGACLLGSINM-ARLVSNPFESNAELNQSAMQELVATAVRMMDNVVDVSKFPLEA 329 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 R IGLG+ G AL +L + Y S A D + I+ A ASV+LA+E+ Sbjct: 330 QAAEAQAKRRIGLGVTGLADALLMLGLEYGSDAAARQTDRWLHAIARAAYLASVDLAKEK 389 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ F D+ LA MN +++++ ++ G+RN+ + Sbjct: 390 GAFPLF------------DAEAYLASGN---MMNMD-----EDVREAIREHGIRNALLTS 429 Query: 766 IAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ G VS I+P + Y + + D + +V+ Q ++ E +D Sbjct: 430 IAPTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGTDA 487 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883 G N + +P P ++ + QKWID + S + E S Sbjct: 488 ALP-GYFVNAQTLP--------------PAAHVKMQAAAQKWIDSSISKTINCPEDISFD 532 Query: 884 KLDFIYRQAWLMGLK--TTY 901 + +Y QAW G K TTY Sbjct: 533 EFKDVYMQAWDQGCKGCTTY 552 >gi|254976541|ref|ZP_05273013.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-66c26] gi|255093926|ref|ZP_05323404.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile CIP 107932] gi|255315678|ref|ZP_05357261.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-76w55] gi|255518339|ref|ZP_05386015.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-97b34] gi|255651456|ref|ZP_05398358.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-37x79] gi|260684516|ref|YP_003215801.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium difficile CD196] gi|260688174|ref|YP_003219308.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium difficile R20291] gi|306521279|ref|ZP_07407626.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-32g58] gi|260210679|emb|CBA65437.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile CD196] gi|260214191|emb|CBE06440.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile R20291] Length = 699 Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 174/707 (24%), Positives = 314/707 (44%), Gaps = 100/707 (14%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---------------------FA 292 E YIEE ++ +L + ++ L YL ++ Y ++ F Sbjct: 26 EALSSYIEEFIQPKLRKFNNLEERLKYLIDEGYYLKEVINQYSIDVIKNIYDMIDKHKFE 85 Query: 293 FE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFH 350 F+ Y+ Y Y L N + E+ + + +V + L L +K+ A+ + + Sbjct: 86 FQSYMSANKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGDKD-LALNLADKIVKQE 143 Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G R ++ SCFL +V D GI A+ + L+K GG+ + + +R Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G I G + GV+ K+ + NQ G R+G+ YL +H D E +D +K Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD FM+ +N F P V + + E E+ E Y++ Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDKLV 322 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC EI Sbjct: 323 NDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCEIF 381 Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + E CNLGS+N+ N D + ST+ TA+R L V D Sbjct: 382 QYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + SN +IGLG M L +I Y S +A++ ++ + +++I Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL----------- 744 AS+++A ER + F S + +G + +L++ ++ + ++ ++ Sbjct: 497 ASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552 Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W +L VK G+ N+ MA+APT +I+ + + SI P + + V++ GD T + Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDSTTI 610 Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 FL N+ ++ Y+ +A+ +D +I+ Sbjct: 611 YPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVIDLV 639 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S L++ DE + + + Y A+ GLK+ YY R++ Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|81428552|ref|YP_395552.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus sakei subsp. sakei 23K] gi|78610194|emb|CAI55243.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus sakei subsp. sakei 23K] Length = 723 Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 167/659 (25%), Positives = 290/659 (44%), Gaps = 84/659 (12%) Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 ++DF F+ ++ Y +Y L N + + + F RV E A+ + + Sbjct: 90 DQDFHFKSFMAAYKFYAQYALKTNDNGFYL-EDFKDRVFTNALYFADGDEALAMSVADEM 148 Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TPT N+G +R +L SCFL DD+ I + L++ GG+G + Sbjct: 149 IHQRYQPATPTFLNAGRSRRGELVSCFLLQTTDDMNSIGRTINSALQLSRIGGGVGISLS 208 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +RG G I G +G + GV+P +K+ D+ NQ G+R+GA YL +H DV FL Sbjct: 209 NLRGAGDPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDVVAFLGA 268 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAY 522 +K D++ R ++ +PD + + V ++A LFSP V YG+ F +I Sbjct: 269 KKENADEKYRLKTLSLGLTVPDKYYELVKEDADMYLFSPYSV---EREYGQPFSYIDITA 325 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y+ IK KI A L ++ + E+G+P+I D N +P G + S Sbjct: 326 E-YDNLVANEAIKK-TKIKARDLENEISKLQQESGYPYIVNIDTANKANPID--GKIIMS 381 Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+E+ +N+ E + CNLGS N+ + F + +I T VR Sbjct: 382 NLCSEVLQVQTPSQINNRQEYDVLGTDISCNLGSTNIPNMMTSPDFGH-----SIETMVR 436 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + N IGLG MG + + Y S E+++ Sbjct: 437 SLTYVTDHSDIDVVPSVAHGNQLAHTIGLGGMGLHTYFAKNQMMYGSEESIDFTSNYFML 496 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVRDEL-AMNRTS 742 +++ + AS ++A+ERG + +F+ S + G + + A+V+ + + Sbjct: 497 LNYWTLVASNKIAKERGITFDNFENSKYADGSYFDQYLNTEWAPKTAKVKGLFDGVFIPT 556 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W LK+ + G+ + N +A+AP +I+ I S S+ P Sbjct: 557 QADWAALKEAIMQDGLYHQNRLAVAPNGSISYINDTSASLQP------------------ 598 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 +VN ++ R E I + Y + N E +P + +A++ID +I+ + Sbjct: 599 ---IVNRVEDR---QEKKIGTIYYPAPGLSN-ETMP-----YYESAYDIDMRKVIDIYAA 646 Query: 863 RQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK +DQ S+ L++ D+ + + L+ + A +K+ YY+R+ Sbjct: 647 AQKHVDQGMSMTLFMRSTIPAGLYDWKDGRTDKMTTRDLNILRNYAHHKSIKSIYYIRT 705 >gi|282598965|ref|YP_003358882.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage phiW-14] gi|257219035|gb|ACV50050.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage phiW-14] Length = 711 Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 165/620 (26%), Positives = 281/620 (45%), Gaps = 104/620 (16%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS----SCFLTTVPDDLYGIFGALQENAMLA 394 A Y+ S F+ ++P N+ ++ SCFL VPD + G+ E ++L+ Sbjct: 57 AQRLYDYASKDDFIWASPAFSNATLPGEKIRAMPISCFLPDVPDSVPGLLYQKAELSLLS 116 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV-AVNQGGKRKGAVCAYLE 453 GG+G ++ +R + + K+ G IPF+ ND+A+ A QG R+GA+ A L Sbjct: 117 VLGGGVGQNFGGIRSV-------SDKAPGPIPFI-AENDSAILAWKQGKIRRGALSANLG 168 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D EF+ +R TGD R++ +++ + D +M+ V E L D Sbjct: 169 VTHPDTMEFMRIRVPTGDIERKSLNIHHGFNVTDEYMQAVVDGI--------ETLPLIDP 220 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRS 571 GK+ ++ +R+M+T+ TG P++ F D + Sbjct: 221 TGKQVG-------------------SMNPREHFREMVTVRSRTGEPFMYFIDRAQEYLSL 261 Query: 572 PQQHVGVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 PQ+ +G+ ++N+CTEITL ++ + T VC L SIN + + + Y ++ S + + Sbjct: 262 PQKLIGMACKATNICTEITLAATKDRTPVCCLCSINA-ERYEDFKPYYQEMVSDL---IE 317 Query: 631 VLDNVIDINCHTIEKA--------------------KKSNHTHRAIGLGLMGFQSALHLL 670 +LDN+I+ +EK KKS R++GLG+MG L Sbjct: 318 MLDNIIEFFVQNVEKVAEGYADQLDRDLIRLLVQKVKKSAECERSVGLGVMGLAYMLQRA 377 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGVFPIDSIG 727 + +A ++ E E + + +AS L ERG + L + G+ P Sbjct: 378 DMVFAGEDSREYELEFFRQLKDFSHAASCRLGIERGVPPDIQAYLEKCKELGIEP----- 432 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 D +NR RN + +AIAP A + I S SI+ Y Sbjct: 433 ------DPYWVNR------------------RNLHLLAIAPNANSSVILNTSASIEFMYS 468 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 N+Y + +G F V N +L L+ + E + + +K GS+ ++ + + K+++A Sbjct: 469 NVYSREMRTGTFEVRNRYLEKLLESQGRNTEEVWNQIKADSGSVKGLDFLTEHQKRVYAV 528 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLKTTYYLR 904 E++ M ++ A RQ +I QAQSLNL+ P G ++F ++ AW +G+K+ YY + Sbjct: 529 PEEMNMMDVVVRAGERQVYICQAQSLNLFF--PPGSDINFVMAVHILAWKVGVKSLYYYK 586 Query: 905 SRSATSVEKSTLKGVDGKLN 924 + S +EK + K KL Sbjct: 587 TESEVKIEKPSDKTEREKLT 606 >gi|304406355|ref|ZP_07388011.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304344413|gb|EFM10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 694 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 170/693 (24%), Positives = 300/693 (43%), Gaps = 86/693 (12%) Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ T+ Y + + RY E V+ +F K+ D+A + + Sbjct: 47 EQVTYMIQNDFYEDVYARYTPEQVEEIFASTHGFNFQFSSYMAASKFYTDYAMKSDDRTV 106 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLF 359 ++Y R+ M VA+ L + +K KR AV + +TPT Sbjct: 107 YMEKY-----PDRVAM-------VALHLGEGDFDKAKRLAVS----MMEQRVQPATPTFL 150 Query: 360 NSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N+G +R ++ SCFL + D L I L L+K GG+ + + +RG G I G Sbjct: 151 NAGKSRRGEMVSCFLLEMDDSLNSINYVLGTCMQLSKIGGGVAVNLSKLRGRGEPIKGVE 210 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 G ++G++P LK+ D +Q G+RKG+ Y + DV EFLD +K D++ R Sbjct: 211 GAAKGIMPVLKLMEDAFSYADQMGQRKGSGAGYYNIFGWDVMEFLDSKKINADEKTRLKT 270 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 ++ +P+ F + QN +F P + + ++ + ++ E Y+ +K Sbjct: 271 LSIGLIVPNKFYELAAQNKPLVVFGPHSIHKAYGVHMDDMDLD-EMYDTLLADERVKKKS 329 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-- 595 +SA + K+ + E+G+P+I + N + +G + SNLCTEI L +SE Sbjct: 330 IMSAREMLVKIAMIQLESGYPYIMNRSNANKDHALKGIGAIKMSNLCTEIFQLQETSEIN 389 Query: 596 ---------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI----NCHT 642 CNL S+N++ N D K+ ++ + L +V D+ N Sbjct: 390 DYGQSDVIRRDISCNLASMNIV-----NVMDLGKIKESVHEGIEGLTSVSDMAQIANAPG 444 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 I KA + H+ +GLG M L I Y S EA + A ++F+++ S+ +A Sbjct: 445 IRKANEELHS---VGLGAMNLNGYLAKNKIAYESEEARDFARTFFMMMNFYSLEKSMHIA 501 Query: 703 QERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--------MNRTSRLPWDELKKRV 753 ++RG + F+ S + G + D L + R + A M+ S W ELK +V Sbjct: 502 RDRGETFKGFEQSEYANGNY-FDRY-LSTDFRPQTARALELFGEMHIPSPDDWAELKAQV 559 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+ ++ +AIAPT +I+ I + S+ P +V ++ R Sbjct: 560 MKHGVYHAYRLAIAPTQSISYIQNATSSVMP---------------------VVEHIETR 598 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + + Y + D + +A+++D +I+ + + IDQ S Sbjct: 599 TYANSTTYYPMPY----------LAQDNYFFYKSAYQMDQFKVIDMIAEISQHIDQGIST 648 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 L+++ + + ++L Y A GLK+ YY R+ Sbjct: 649 VLHVNSDVTTRELSRYYIYAAKKGLKSLYYTRT 681 >gi|251782829|ref|YP_002997132.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391459|dbj|BAH81918.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127634|gb|ADX24931.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 719 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 259/590 (43%), Gaps = 74/590 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TP+ N+G +R +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + +N LFSP V + + +I E A Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588 + K KI A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386 Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +N + E + CNLGS N+L + F +I+ R L V D Sbjct: 387 QVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTFVTD 441 Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N GLG MG S L HI Y SPE+VE D +++ + Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMNYWTLV 501 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749 S +A+ER + F S + G + + + +L + + +P W+ L Sbjct: 502 ESNNIARERQTTFVGFDKSKYADGTYFDKYVTGQFVPKSDLVKDLFKDHFIPQASDWEAL 561 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + V+ G+ + N +A+AP +I+ I S SI P Q + E Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +Q E I + Y + + + IP + +A+++D +I+ + + +DQ Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 652 GLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|255102107|ref|ZP_05331084.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-63q42] Length = 699 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 164/649 (25%), Positives = 294/649 (45%), Gaps = 79/649 (12%) Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSS 348 F F+ Y+ Y Y L N + E+ + + +V + L L +K+ A+ + + Sbjct: 84 FEFQSYMSANKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGDKD-LALNLADKIVK 141 Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N+G R ++ SCFL +V D GI A+ + L+K GG+ + + + Sbjct: 142 QEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKL 201 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R G I G + GV+ K+ + NQ G R+G+ YL +H D E +D +K Sbjct: 202 RASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKK 261 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD FM+ +N F P V + + E E+ E Y++ Sbjct: 262 INADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDK 320 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC E Sbjct: 321 LVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCE 379 Query: 588 ITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + E CNLGS+N+ N D + ST+ TA+R L V Sbjct: 380 IFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFV 434 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + SN +IGLG M L +I Y S +A++ ++ + +++ Sbjct: 435 ADSTDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYS 494 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------- 744 I AS+++A ER + F S + +G + +L++ ++ + ++ ++ Sbjct: 495 IKASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYI 550 Query: 745 ----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W +L VK G+ N+ MA+APT +I+ + + SI P + + V++ GD T Sbjct: 551 PTKEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDST 608 Query: 801 VVNS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 + FL N+ ++ Y+ +A+ +D +I+ Sbjct: 609 TIYPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVID 637 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S L++ DE + + + Y A+ GLK+ YY R++ Sbjct: 638 LVATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|294676157|ref|YP_003576772.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus SB 1003] gi|294474977|gb|ADE84365.1| ribonucleoside-diphosphate reductase NrdJ-1 (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB 1003] Length = 755 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 158/592 (26%), Positives = 263/592 (44%), Gaps = 90/592 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 RVA LA E + +FY L F F+ + L +GT R L +CF + T+PD + Sbjct: 37 RVARDLASVEADPAHWEPKFYAALEDFKFLPAGRILAGAGTGRAVTLFNCFVMGTIPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 AGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAAVKGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F+ ++ D R N + I D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFITAKQ----DSARLRMFNLSVLITDAFMEAVKADGPW- 211 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 E+ ++ KV+ ++A LW K++ ++ P Sbjct: 212 ------------------ELVFDG----------KVYHTLNARDLWNKIMRATYDFAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-Q 615 + F D N + ++ + ++N C E L C LGS+NL A F + + Sbjct: 244 VIFIDRINAMNNLAYLEQIAATNPCGEQPL----PPYGACLLGSVNLARLVTAPFTDQAR 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L +RT+VR++DNV+D + + + + R IGLG+ G AL +L + Y Sbjct: 300 LDLAALDELVRTSVRMMDNVVDASRFPLPQQQAEAANKRRIGLGVTGLADALLMLGLRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 +A + M+ I+ A ASV+LA+E+GA+ F E Sbjct: 360 DDKAAAQTEAWMKAIARAAYLASVDLAREKGAFPLFDA---------------------E 398 Query: 736 LAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 ++ + L DE +++ + T G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 399 KYLSSGNMLQMDEDVRQAIATHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D + +V+ + LW D+K G++ L A + P Sbjct: 459 VLQKDGSRTEEEVVDYAVK--LW-----RDMK------GDVA-----LPAYFVNAQTLAP 500 Query: 854 MWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901 M ++ + QKWID ++++N +D S +Y A+ G K TTY Sbjct: 501 MDHVKMQAAAQKWIDSSISKTINCPVDI-SFDDFKDVYMAAFESGCKGCTTY 551 >gi|257373021|ref|YP_003175795.1| ribonucleotide-diphosphate reductase subunit alpha [Halomicrobium mukohataei DSM 12286] gi|257167745|gb|ACV49437.1| ribonucleoside-diphosphate reductase, alpha chain [Halomicrobium mukohataei DSM 12286] Length = 564 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 156/583 (26%), Positives = 250/583 (42%), Gaps = 107/583 (18%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A +FY+ +S + ++P N G SCF + + D++ I E + K G Sbjct: 62 ADKFYDYMSRGFYSLASPVWSNFGLDRGLPISCFGSYMEDNMESILYTQAEVGEMTKLGG 121 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G + +R G+ I NGKS G F ++ + V+QG R+G Y++ H D Sbjct: 122 GTSGYFGEIRPRGSPIT-NNGKSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDVEHDD 180 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 ++E+L+++ D V D++ YG Sbjct: 181 LDEWLNIKTEG-----------------------------------DPVQDIY--YG--V 201 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577 I + + D E K W +++ G P+I F+D N PQ + Sbjct: 202 IIGDDWFRAMVDGDEEKR-------ETWAEIIETRINIGVPYIIFRDNMNDGKPQVYKDR 254 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 ++ SNLCTEI L ++ +E+ VC L S+N L +D K + T R LD V Sbjct: 255 GYEINGSNLCTEIALPATPDESFVCCLSSMNAL------HYDEWKDTDAVETLTRFLDAV 308 Query: 636 IDI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 I+ +E+ + HRA+G+G++G+ S L IP+ S EA+E + Sbjct: 309 IEEFIQEAEGTQFMERPVRFAKRHRAVGIGVLGWHSYLQSEMIPFDSMEAMEKNEAIFRT 368 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I + S LA E G +G Sbjct: 369 IKERSYEESRRLADEFGEPEVLEG------------------------------------ 392 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN+ M++APT + + I G VS SI+P N +V+ T N FL Sbjct: 393 ------YGRRNATTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEA 446 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 LK+R + + + +DGS+ +++ + D+ K++ T EI M +I A++RQK ID Sbjct: 447 ILKERGRDEREVWDSIAQNDGSVQHLDCLTDEEKEVFKTFAEIPQMAIINQAAQRQKHID 506 Query: 869 QAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 QAQSLN+ +D E S K+++ +Y +AW G+K+ YY S +A Sbjct: 507 QAQSLNVSIDPSEVSVKEINQLYIEAWKKGVKSLYYQHSVNAA 549 >gi|46519448|gb|AAT00096.1| JM119 [Macaca fuscata rhadinovirus] Length = 788 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 176/708 (24%), Positives = 296/708 (41%), Gaps = 90/708 (12%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVA 325 L HE+ +D L Y YL YD Y L +GS E FMRVA Sbjct: 94 LKHEAALDGLLQDFKQSKAYANLVNCGYLSAVRFYDTYVLRTHGSSPIFESVAQMFMRVA 153 Query: 326 MGLA--------LKET-----EKEKRAVEFYNLLSSFHFM------CSTPTLFNSGTRHP 366 + +A L++T + E E Y + +FH++ C+TP L ++G R Sbjct: 154 VFVACQCIKFPCLRKTLRHLVQSETELDEMYLVGYAFHYISSQIVCCATPVLRSAGLRGG 213 Query: 367 QLSSCFL--TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSCF+ ++ + + +E + L G+G D V H + + Sbjct: 214 QLSSCFILKPSMATENKTLKALHEEMSPLLASKSGVGID---VSSFAEH--------KNI 262 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 LK+ N N R AY+E WH + +FL+ + +++ R H++ Sbjct: 263 TSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAK--MPENQERCHNLFQGVC 320 Query: 485 IPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 +P+LF + N W LF+P+ +L LYG EFEI Y R G K + Sbjct: 321 VPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EYNRLVAAG--KHSSSLPL 375 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCN 601 ++ ++ + +TG P++ K+ N + G ++ SNLC EI + + +VCN Sbjct: 376 KSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNLCAEI-VQQPEGQASVCN 434 Query: 602 LGSINLLAHF-------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 L +I+L + F ++ L + AV +++ I E ++ Sbjct: 435 LANISLPKCLRPPRGKSGVEPGKGDVTFGFELLDDAVEAAVIIVNACILGGTAPTESVRR 494 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE--LAQERG 706 R++G+G+ G L Y E+ ++ E + + F A+ S E L E Sbjct: 495 -GQKERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQAMYFAAVHTSHEIVLLGEGT 553 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + ++ S QGVF + D + + W++L + + G+ NS +A+ Sbjct: 554 PFHGWERSRLAQGVFHW-------QTWDGVKPSHPPLERWEQLGRSIAQHGIFNSQFLAL 606 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTA + + G +++ P + N+ K + N +K DL ++ Sbjct: 607 MPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKRVKPGDL------RTVRR 660 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 + G + + D KI TAF+ P+ +E A R ++DQ+QSLN +L E + Sbjct: 661 YGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQSQSLNFFLKEEQATRAS 720 Query: 887 FI---YRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 +I + +GLKT YY R ++K T KLNA+ D Sbjct: 721 YIRDLLLTGYRLGLKTMLYYCR------IQKQT------KLNALQCLD 756 >gi|116490255|ref|YP_809799.1| ribonucleotide-diphosphate reductase subunit alpha [Oenococcus oeni PSU-1] gi|116090980|gb|ABJ56134.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Oenococcus oeni PSU-1] Length = 723 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 153/605 (25%), Positives = 273/605 (45%), Gaps = 86/605 (14%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TP+ N+G R +L SCF+ DD+ I + L+K GG+G + + VR Sbjct: 153 FQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNVRE 212 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA + + GV+P +K+ D +Q G R+GA AYL +H DV FL +K Sbjct: 213 AGASVMRLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKKEN 272 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYER 527 D++ R ++ +PD F + + LFSP +D+ +YG F + Y+ Sbjct: 273 ADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSP---ADVEKVYGVPFNYVDLTKEYDN 329 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 EIK + + A L ++ + E+G+P++ D N +P G V +SNLC+E Sbjct: 330 MVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPV--YGKVVTSNLCSE 386 Query: 588 IT-------LNSSSEETAV-----CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633 I +N+ E T + CNLGSIN+ + H A D+ K T+ A+ + Sbjct: 387 ILQTQTISRINNEQEYTQLGADISCNLGSINIDNMMHTA----DFGKSVETMTRALTFVS 442 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 DI+ + + N AIGLG MG + L I Y A++ + +++ Sbjct: 443 ESSDISV--VPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYY 500 Query: 694 AISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSRLP--- 745 + AS ++A+ERG ++ F+ S + G + + G + +L + +P Sbjct: 501 TLLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDY--HVPTIE 558 Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W LK+ V G+ N+ A+APT +I+ + + S+ P Sbjct: 559 DWQRLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQP-------------------- 598 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +V+ ++ R E M + Y + N E +P + +A+++D +I++ + Q Sbjct: 599 -IVSRVEAR---AEGMTGRVFYPANGLSN-ETLP-----YYVSAYDLDQRKVIDTYAAAQ 648 Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + +DQ ++ L++ D+ + + L + A+ G+K+ YY+R+ + Sbjct: 649 EHVDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTD 708 Query: 909 TSVEK 913 + E+ Sbjct: 709 DNTEQ 713 >gi|327198710|emb|CCA61411.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 580 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 175/655 (26%), Positives = 279/655 (42%), Gaps = 124/655 (18%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 YE D ++ +GL + D Y S PQ V + + + Y Sbjct: 6 YEMDKLYDSVGLLRMKDSYLSGGEAS----PQDRLASVCNQFGTDDDHRRR----LYEYA 57 Query: 347 SSFHFMCSTPTL-FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S S+P L +N + SC+L + D + G+ L E L+ GG+ Sbjct: 58 SKHWLSLSSPLLGYNKDKKMSYPISCYLLYLHDTVEGLIDTLSEANHLSVCGGGVS---- 113 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 + I N KS GV+ K + +A QG +R G+ YL+ H ++ F+D+ Sbjct: 114 ----VKMGIRPLNDKSLGVVSHCKTYDSCVLAYKQGSRR-GSYAMYLDVSHPEILAFIDI 168 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFM---KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 RK TGD R +++ A + D FM +R T++ S D+ DL D Sbjct: 169 RKPTGDYNMRCLNIHNAICLSDKFMEIIERCTEDP-----SADDSWDLVD---------- 213 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-V 579 G +K + +SA +W+K++ M +TG P++ F D CN + Q+ G+ + Sbjct: 214 ------PSTGVVK--QTVSAKLIWQKIIEMRMQTGEPYLCFVDACNRDMNPYQKARGMKI 265 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVI- 636 SNLCTE+ + ++ +++C L S+N+ + + NN+ I + +LDNV+ Sbjct: 266 EQSNLCTEVIVPTNETRSSLCCLASVNIEKYEEWKNNE-------RFIGDTMEMLDNVLT 318 Query: 637 ----DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 H ++ S R IG+G++GF S L + + S EA + E ++++ Sbjct: 319 EFERKATSHRFDRVNDSVKKERNIGIGVLGFHSYLQSVGVSIESEEAQRVNIEIFKWLNE 378 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 ++EL RG GS Sbjct: 379 TCDKYNLELGSRRGTPEDIAGS-------------------------------------- 400 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN--- 808 G R + MA+APTAT + I G S SI+P N+Y + +SG N L Sbjct: 401 ----GRRFAYTMAVAPTATTSIIMGNTSPSIEPFRANVYRQDTVSGSQFNKNKNLDRLFD 456 Query: 809 ------ELKQRDLWDEAMISDLKYHDGSIGNIER--IPDDLKKIHATAFEIDPMWLIESA 860 +LK + LW + + +DGS+ +++ I K + T E++ L+E A Sbjct: 457 SKGYGPKLKAK-LW-----TSIVANDGSVQHLDERFITKSEKDVFKTFIEVEQSKLVELA 510 Query: 861 SRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 + R K+IDQ QSL L DEP + I+ QAW GLKT YYLRS + +K Sbjct: 511 AGRHKYIDQGQSLTLTFGPDEPVA-NIHRIHLQAWKSGLKTMYYLRSAKISRADK 564 >gi|7330058|gb|AAF60047.1|AF210726_68 large ribonuclease reductase [Rhesus monkey rhadinovirus H26-95] Length = 788 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 187/744 (25%), Positives = 308/744 (41%), Gaps = 110/744 (14%) Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMG 327 HE+ +D L Y YL YD Y L GS E FMRVA+ Sbjct: 96 HEAALDGLLQDFKQSKAYTNLVNCGYLSAVRFYDTYVLRTQGSSPIFESVAQMFMRVAVF 155 Query: 328 LA--------LKET-----EKEKRAVEFYNLLSSFHFM------CSTPTLFNSGTRHPQL 368 +A L+ET E E E Y + +FH++ C+TP L ++G R QL Sbjct: 156 VACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYISSQIVCCATPVLRSAGLRGGQL 215 Query: 369 SSCFL---TTVPDDLYGIFGALQE--NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 SSCF+ + +D AL E + +LA SG +G D V H + Sbjct: 216 SSCFILKPSMATED--KTLKALHEEMSPLLASKSG-VGID---VSSFAEH--------KN 261 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 + LK+ N N R AY+E WH + +FL+ + +++ R H++ Sbjct: 262 ITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAK--MPENQERCHNLFQGV 319 Query: 484 WIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 +P+LF + N W LF+P+ +L LYG EFEI Y R G K + Sbjct: 320 CVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EYNRLVAAG--KHSSSLP 374 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVC 600 ++ ++ + +TG P++ K+ N + G ++ SNLC EI + + +VC Sbjct: 375 LKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNLCAEI-VQQPEGQASVC 433 Query: 601 NLGSINLLAHF-------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 NL I+L + F ++ + + AV +++ I E + Sbjct: 434 NLAHISLPKCLRPHRGESGVEPGKGDVTFGFELIDDAVEAAVIIVNACILGGTAPTESVR 493 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R++G+G+ G L Y ++ ++ E + + F A+ + E+ G Sbjct: 494 RGQE-ERSMGIGVQGLADVFAELGFGYLDADSAKLDLEIFQAMYFTAVQTTHEIVL-LGE 551 Query: 708 YSSFKGSLWD-----QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 + F+G W+ QGVF + D + + W++L + + G+ NS Sbjct: 552 GTPFRG--WERNQLAQGVFHW-------QTWDGVKPSHPPLERWEQLGRSIAQHGIFNSQ 602 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+ PTA + + G +++ P + N+ K + N +K DL Sbjct: 603 FLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKRVKPGDL------R 656 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 ++ + G + + D KI TAF+ P+ +E A R ++DQ+QSLN +L E Sbjct: 657 TVRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQSQSLNFFLKEEQA 716 Query: 883 KKLDFI---YRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--NSSTH 936 + +I + +GLKT YY R ++K T KLNA+ D + Sbjct: 717 TRASYIRDLLLTGYRLGLKTMLYYCR------IQKQT------KLNALQCLDQVVGDNIS 764 Query: 937 SLGIPSSCTSDTE------CEVCQ 954 S G S+C + C CQ Sbjct: 765 SEGAESNCVQKADGERTKVCLACQ 788 >gi|187919646|ref|YP_001888677.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phytofirmans PsJN] gi|187718084|gb|ACD19307.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phytofirmans PsJN] Length = 861 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 160/607 (26%), Positives = 273/607 (44%), Gaps = 90/607 (14%) Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA G+A E + + +VE + L + M + T + L +CF+ Sbjct: 51 FKRVARGVAEAEPQALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 105 Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D L GI+ AL + A + GG+G +++ +R GA +H T+ + G Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 165 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V ++ W L +H + A ++ ++ D + V+ + A A+ Sbjct: 222 TDEFMRAVEEDQPWQL--------VHRAEPSPAQRAADDVRQRED--GLWVYSERPARAI 271 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +++ ++ P I F N + + V + ++N C E L + CNLG + Sbjct: 272 WDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 327 Query: 606 NL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL + FA + FD+D LA RT VR LDNV+D+ +++ + R I Sbjct: 328 NLTRFVIDPFAQMKGRKPSFDWDGLAKRTRTQVRFLDNVLDVTLWPLQQQYDESRAKRRI 387 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF-KGSL 715 G+G G L +L + Y S E + A + + A ASVELA+ERGA+ F G Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIAQLMRDEAYRASVELARERGAFPLFDAGRY 447 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G F SRLP D +K+ ++ G+RNS+ ++IAPT T+ A Sbjct: 448 LEAGTF-------------------ASRLPED-IKEAIRRDGIRNSHLLSIAPTGTVSLA 487 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P++ Y + + D SF V + R L+ E G+ Sbjct: 488 FADNASNGIEPAFSWTYTRMKVMADGG-RESFDVEDYAYR-LYRELG-----------GD 534 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 ++PD +A E+ ++ + Q ++D ++++N+ D P + + +Y Sbjct: 535 TNKLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYFD 589 Query: 892 AWLMGLK 898 AW GLK Sbjct: 590 AWKNGLK 596 >gi|217969781|ref|YP_002355015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thauera sp. MZ1T] gi|217507108|gb|ACK54119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thauera sp. MZ1T] Length = 957 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 156/556 (28%), Positives = 246/556 (44%), Gaps = 73/556 (13%) Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L +CF+ V D + GI+ AL + A + GG+G D++ +R GA + GT Sbjct: 95 LINCFVQPVGDSVTEAVDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGALVKGTASN 154 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + +++V + + V G R+GA L H D+EEF+ K+ GD + N Sbjct: 155 ASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDEGD----LTNFN 209 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D FM+ V + +V +H E A Y+R D G + V+RK+ Sbjct: 210 ISVGVTDPFMQAVEADG--------DVELVHKAEPTEEVKAAGAYQR--DDG-MWVYRKV 258 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW +++ ++ P I F D N + + + ++N C E L C Sbjct: 259 RARELWDQVMRSTYDHAEPGILFLDRMNADNNLYYCETIEATNPCAEQPL----PPYGCC 314 Query: 601 NLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 LGSINL N +FDY + ++R+LDNV+++ + + + R Sbjct: 315 CLGSINLTLFVKNPFGDKAEFDYAGFGKVVDVSIRMLDNVLEVTHWPLAQQHAEAQSKRR 374 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG G AL +L Y + EA E A + EF+ A AS ELA+ERGA+ F L Sbjct: 375 VGLGFTGLGDALIMLGQRYDTAEAREEARKISEFMRNRAYLASSELARERGAFPLFNADL 434 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G N SRLP D +K +++ G+RNS+ ++IAPT TI A Sbjct: 435 YLSG------------------GNFASRLPAD-VKDKIRKHGIRNSHLLSIAPTGTISLA 475 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P + Y + D T + V + R L H G GN Sbjct: 476 FADNASNGIEPPFSYTYTRRKRMADGT-FKEYAVEDYAWR----------LYKHLG--GN 522 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 ++++P TA EI + + ++D ++++N+ D P + D +Y Sbjct: 523 VDKLPQSF----VTALEISAQAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFED-LYLT 577 Query: 892 AWLMGLKTTYYLRSRS 907 AW GLK R S Sbjct: 578 AWKAGLKGLATYRPNS 593 >gi|89053442|ref|YP_508893.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1] gi|88862991|gb|ABD53868.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1] Length = 757 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 153/594 (25%), Positives = 255/594 (42%), Gaps = 94/594 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E + FY L F ++ + + +GT R L +CF + TVPD + Sbjct: 37 RIAKALAAVEDDSATWEETFYTALEDFKYLPAGRIVAGAGTGRSVTLFNCFVMGTVPDSM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E+F+ ++ D R N + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFIAAKQ----DPARLRMFNMSVLATDPFMEAVKDDGPWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L D KVFR + A LW +++ ++ P Sbjct: 213 LVFGD-----------------------------KVFRTVQARDLWNRIMRATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 + F D N + + + ++N C E L C LGS+NL A ++ F Sbjct: 244 VIFIDRINAENNLNYAETICATNPCGEQPL----PPYGACLLGSVNL-AQLVSDPFTDTA 298 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D KLA TA+R++DNV+D + ++ + R IGLG+ G AL + + Y Sbjct: 299 DLDPIKLADLTATAIRMMDNVVDTSRFPLDAQAQEAQAKRRIGLGVTGLADALAMCRLRY 358 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA ++ M I+ + AS LA E+GA+ F + + + Sbjct: 359 GSEEAAAKTEDWMARIANASYRASALLAAEKGAFPLFDAAEYAKAPM------------- 405 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 RL D ++ + G+RN+ +IAPT TI+ G VS I+P + N Y + Sbjct: 406 ------VQRLDAD-VQALIAEHGLRNALLTSIAPTGTISLFAGNVSSGIEPIFANAYTRK 458 Query: 794 NMSGDFTVVNSFLVN--ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + D T +V+ K RD+ + + D + ++ ++ + ++ A A Sbjct: 459 VLQVDGTRTEEEVVDFAVAKWRDMHGDTPLPDYFVNAQTLAPLDHV-----RMQAAA--- 510 Query: 852 DPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901 Q WID ++++N+ D S + +Y +A+ G K TTY Sbjct: 511 ------------QPWIDSSISKTINVPADI-SFEAFKDVYAEAYATGCKGCTTY 551 >gi|326333060|ref|ZP_08199311.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardioidaceae bacterium Broad-1] gi|325949134|gb|EGD41223.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardioidaceae bacterium Broad-1] Length = 571 Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 158/589 (26%), Positives = 256/589 (43%), Gaps = 117/589 (19%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F+ + + STP L N GT SC + V D ++G + L+E A+L++ G Sbjct: 76 FFEAIWNGWLSPSTPVLSNLGTDRGLPVSCEGSYVEDSVWGFYETLKEAAILSQNGFGTS 135 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIP----FLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 VR GA NGK+ GV+P F+++ N ++QG R+G+ YL H Sbjct: 136 AYLGDVRPRGAKFS-DNGKANGVVPVFCNFVEMTNQ----ISQGATRRGSWAGYLPVDHP 190 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D E DL +F + +N GW Sbjct: 191 DFYELADL----------------------IFREPANKNVGWI----------------- 211 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW-ITFKDPCNIRSPQQHV 576 F A+ + D+ ++ ++++ + ++ G+ W + + S Q + Sbjct: 212 FSQAFIDRMLAGDKDALERYQRVLKI-------RVVLGKGYIWKVDTVNAAQTESYQANG 264 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 +SNLC+EITL S + + C L S+NL + +D K T A LD V Sbjct: 265 LANKASNLCSEITLFSDEDHSYTCVLSSLNL------STYDEWKDQDTAYVATVFLDAVA 318 Query: 637 DI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 + +E+A + R++GLG+MG+ L +P+ S +A + + E I Sbjct: 319 EAFLRKARTIRGLERAVRYTEKARSLGLGVMGYHDYLQKQRVPFESDKAAALNKDIFERI 378 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDEL 749 S A +AS W M + +P W Sbjct: 379 SSRADAAS----------------RW---------------------MGSVAGIPEW--- 398 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 +G RNS+ MAIAPT + A I G SQ I+P N++ ++ +G+ N LV Sbjct: 399 -----CVGRRNSHLMAIAPTMSTAVIVGGTSQGIEPYVANVWNQTTSAGEMPRANQNLVE 453 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +K+R ++D+A ISD+ H GS+ ++ + D K++ T +EID L+ AS RQ +ID Sbjct: 454 VMKERGVYDQAHISDIIDHGGSVQHVSWLDDHEKEVFRTGYEIDQEILLARASDRQVYID 513 Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWL-MGLKTTYYLRSRSATSVEKST 915 QAQSLNL+ + + + + I++ A L +K+ YYLRSR+ K + Sbjct: 514 QAQSLNLFFQADATPQYISKIHKLALLDPNIKSLYYLRSRAGIQASKQS 562 >gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] Length = 822 Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 157/598 (26%), Positives = 260/598 (43%), Gaps = 98/598 (16%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378 + R+A LA E + + +FY L+ F ++ + +GT R L +CF + T+PD Sbjct: 35 WARIAKSLASVEKDPKAWEPKFYKALNDFRYLPAGRITAGAGTDRSVTLFNCFVMGTIPD 94 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 95 TMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAVVKGVAADASGPLSFMDVWDAMCRTI 154 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 G R+GA+ A + H DV +F+ + D R N + I D FM+ V + Sbjct: 155 MSAGSRRGAMMATMRCDHPDVMDFITAKS----DAARLRMFNMSVLITDPFMEAVKADTP 210 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L EV R + A LW ++ + Sbjct: 211 WDLIWDGEV-----------------------------VRTVQARDLWDSIMQSTYSHAE 241 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN 614 P + F D N + +V + ++N C E L C LGSINL L FA+ Sbjct: 242 PGVIFIDRINTMNNLNYVETIAATNPCGEQPL----PPYGACLLGSINLARLVLNPFADA 297 Query: 615 Q-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D ++L + AVR++DNV+D + +E + R IGLG+ G AL + + Sbjct: 298 ATIDDNELTELVGLAVRMMDNVVDASKFPLEAQAQEAVAKRRIGLGVTGLADALLMTGLR 357 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y SPEA + M+ I+ A ASV+LA+E+GA+ F D+ + + + + +VR Sbjct: 358 YGSPEAARQTEHWMKAIARAAYLASVDLAREKGAFPLFDA---DKYLASGNMMQMDEDVR 414 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVK 792 D ++ G+RN+ ++APT TI+ G VS I+P + Y + Sbjct: 415 DA-----------------IREHGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAYAYTR 457 Query: 793 SNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + D + +V+ + RDL +A + D + ++ ++ + ++ A A Sbjct: 458 KVLQKDGSRTEEEVVDYAVKMWRDLKGDAELPDYFVNAQTLPAMDHV-----RMQAAA-- 510 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY 901 QKW+D + S + + E +DF +Y AW G K TTY Sbjct: 511 -------------QKWVDSSISKTINVPE----DIDFQSFKDVYMAAWDQGCKGCTTY 551 >gi|237798941|ref|ZP_04587402.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021795|gb|EGI01852.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] Length = 226 Score = 175 bits (444), Expect = 3e-41, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 128/196 (65%), Gaps = 1/196 (0%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + LTEQ + Sbjct: 32 LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM++G K+ R+YV+YR+ R+ RA ++ + P ++I Sbjct: 92 SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRAPDEQ-VQAHPSIRIT 150 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + RL IV EAC GL +V + ++ +ET KN+YDG++ D+ TAL+ ++RT Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210 Query: 209 LIEKEPNYAKVTARFL 224 L+E+EPNY+ VTAR L Sbjct: 211 LVEREPNYSFVTARLL 226 >gi|91778404|ref|YP_553612.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400] gi|91691064|gb|ABE34262.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400] Length = 861 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 159/607 (26%), Positives = 273/607 (44%), Gaps = 90/607 (14%) Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA G+A E + +VE + L + M + T + L +CF+ Sbjct: 51 FKRVARGVAEAEPPALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 105 Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D L GI+ AL + A + GG+G +++ +R GA +H T+ + G Sbjct: 106 QPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 165 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V ++ W L +H + A ++ ++ D + V+ + A + Sbjct: 222 TDEFMRAVEEDQPWQL--------VHRAEPSPAQRAADDVRQRED--GLWVYSERPAREI 271 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +++ ++ P I F N + + V + ++N C E L + CNLG + Sbjct: 272 WDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 327 Query: 606 NL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL + FA FD+D LA RT VR LDNV+D+ + + + + R I Sbjct: 328 NLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNVLDVTLWPLPQQYEESRAKRRI 387 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G L +L + Y S E + A + + A ASVELA+ERGA+ F + + Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVGIAQLMRDEAYRASVELARERGAFPLFDAARY 447 Query: 717 -DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G F SRLP D +K+ ++ G+RNS+ ++IAPT T+ A Sbjct: 448 LETGTF-------------------ASRLPED-IKQAIRRDGIRNSHLLSIAPTGTVSLA 487 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P++ Y + + D + SF V + R L+ E G+ Sbjct: 488 FADNASNGIEPAFSWTYTRMKVMADGS-RESFDVEDYAYR-LYRELG-----------GD 534 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 + R+PD +A E+ ++ + Q ++D ++++N+ D P + + +Y Sbjct: 535 VNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYLD 589 Query: 892 AWLMGLK 898 AW GLK Sbjct: 590 AWKNGLK 596 >gi|209516306|ref|ZP_03265163.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. H160] gi|209503242|gb|EEA03241.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. H160] Length = 861 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 160/602 (26%), Positives = 267/602 (44%), Gaps = 80/602 (13%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPD 378 F RVA G+A E + + +VE + + H + ++ L +CF+ V D Sbjct: 54 FRRVARGVAEAEPPELRASVEALFVDNLRHGALGAGRIMSAAGSGIAATLINCFVQPVGD 113 Query: 379 D--------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L GI+ AL + A + GG+G +++ +R GA +H TN + G ++ V Sbjct: 114 SIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTNSAASGPCSYMDV 173 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + D FM Sbjct: 174 FDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGVTDEFM 229 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + V + W L E S G RQ + G + V+ + A A+W +++ Sbjct: 230 RAVENDEPWQLVHRAEPSPALRSAGDV---------RQREDG-LWVYSEHEARAIWDRIM 279 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607 ++ P I F N + + V + ++N C E L + CNLG +NL Sbjct: 280 RSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPLNLTRF 335 Query: 608 ----LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 A Q FD+D LA RT VR LD+V+D+ + + + R IG+G Sbjct: 336 VVDPFAQLQGRQPSFDWDGLAWRTRTQVRFLDDVLDVTLWPLPQQYDESRAKRRIGVGFT 395 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720 G L +L + Y S E + A + A ASV+LA+ERGA+ F + + + G Sbjct: 396 GLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVDLAKERGAFELFDAARYLETGT 455 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778 F SRLP D++++ ++ G+RNS+ ++IAPT T+ A Sbjct: 456 F-------------------ASRLP-DDIQQAIRRDGIRNSHLLSIAPTGTVSLAFADNA 495 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++ Y ++ M D SF V + R L+ E G++ R+P Sbjct: 496 SNGIEPAFSWTYTRTKMMADGG-RESFDVEDYAYR-LYRELG-----------GDVTRLP 542 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896 D A E+ ++ + Q ++D ++++N+ D P + +Y AW G Sbjct: 543 D----YFVNALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-DAFESLYFDAWKSG 597 Query: 897 LK 898 LK Sbjct: 598 LK 599 >gi|253573377|ref|ZP_04850720.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846905|gb|EES74910.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] Length = 864 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 118/434 (27%), Positives = 210/434 (48%), Gaps = 35/434 (8%) Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D GI L E + GG+G + + +R A + G NG S G + Sbjct: 146 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 205 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + WH DV +F+ +++ G + + N + + Sbjct: 206 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVS 261 Query: 487 DLFMKRVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 + FMK V ++ W L PD D ++++ + + + +AD ++ +R + A + Sbjct: 262 NAFMKAVKEDLDWDLVFPDTTYEDYNEVWDGDLD------KWKADGRKVIHYRTVKAREI 315 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ +++ P + F + N S + + +N C E L VCNL ++ Sbjct: 316 WHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAM 371 Query: 606 NLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + + D +D+LA+T R +VR LDNVI+ + E+ +K+ R +GLG MG Sbjct: 372 NLSKFYDEEKHDVAWDELATTTRYSVRFLDNVINKTPYHFEENEKNQKKERRVGLGTMGL 431 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + L+I Y SPE++E D+ FI+ A AS ++A+E+G++ +F+ + Q F Sbjct: 432 AELMIKLNIRYGSPESLEFLDKLYGFIAKEAYLASADIAEEKGSFPAFEADKFLQSGF-- 489 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 N T P E+ + V+T G+RN + APT + + G S I+ Sbjct: 490 -------------MKNMTEVYP--EVGEAVRTKGIRNVTIITQAPTGSTGTMVGTSTGIE 534 Query: 784 PSYQNLYVKSNMSG 797 P + Y + + G Sbjct: 535 PYFAFKYYRQSRLG 548 >gi|146322250|ref|YP_001174721.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis] gi|145968741|gb|ABQ00019.1| putative ribonucleotide reductase subunit alpha [Lactococcus lactis] Length = 718 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 157/608 (25%), Positives = 267/608 (43%), Gaps = 98/608 (16%) Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L S + +TPT N+G R ++ SCFL + D + I + L++ GG+G + Sbjct: 143 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNL 202 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G+ I S GV+P +K+ D+ NQ G+R GA YL +H D+ EFL Sbjct: 203 SNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLS 262 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD + + + N LF+P V ++ + ++ E Sbjct: 263 TKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMCLFNPYHVERVYGIPFSYVDLTKE- 321 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ GEI+ I+A L +++ + E+G+P+I D N +P + G + SNL Sbjct: 322 YDTMVANGEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTNPVK--GKIIMSNL 378 Query: 585 CTEI---------TLNSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI L+ S ++ CNLGS+N++ N + +I A+R L Sbjct: 379 CSEILQPQEPSILNLDLSYKKVGTDISCNLGSMNMV-----NLMEAKDFGKSIEYAIRAL 433 Query: 633 DNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + N + IGLG MG + L L I Y S EA+E D ++ Sbjct: 434 TTVTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMN 493 Query: 692 FHAISASVELAQERG------AYSSFK-GSLWD-----------QGVFPIDSIGLLAEVR 733 ++++ AS +++ E+ YS + GS +D + V I LL + Sbjct: 494 YYSLKASHQISIEKNETFHNFEYSRYADGSYFDYYLAKKFHFTSEKVAKIFENILLPTIE 553 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D W LK+ V G+ + N +AIAP +I+ I S S+ P Q + Sbjct: 554 D-----------WQLLKENVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLI---- 598 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 E +Q E + + Y + N + + TA+ +D Sbjct: 599 ---------------ENRQ-----EKKVGSIFYPAPYLSN------KTLRYYKTAYNMDQ 632 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGL 897 +I+ ++ Q+ IDQ SL +++ P G + L+ + AW G+ Sbjct: 633 RKIIDIYAKAQQHIDQGMSLTVFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGI 692 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 693 KSLYYVRT 700 >gi|146966|gb|AAA24223.1| ribonucleoside diphosphate reductase B1 subunit precursor [Escherichia coli] Length = 776 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 166/612 (27%), Positives = 268/612 (43%), Gaps = 67/612 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ T + P LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKA-TASLRPPA---------LY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPD 378 + VA L + + V+ FY+ +S+F S PT SG R P Q SSC L D Sbjct: 174 ILVAACLFSNYPREGLQYVKRFYDAVSTFKI--SLPTPIMSGVRTPTRQFSSCVLIECGD 231 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTP-------------VRGLGAHIHGTNGKSQGVI 425 L I +A++ S G TP R + A T G Sbjct: 232 SLDSINAT--SSAIVKYVSQRAGIASTPGVFVRWVARFAVVKRSIPAAFRSTTFPDSG-- 287 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 + + G+R G V + WH++VE L L+ N G + R M+ I Sbjct: 288 --------ESCSRRCAGRRCGNV--FYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQI 337 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISA 542 L R+ + TLFSP +V L+D + +EFE Y YE+ + +++ A Sbjct: 338 NKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKA 393 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSS 593 V L+ M+ TG +I D C SP + V SNLC EI L N Sbjct: 394 VELFSLMMQERASTGRIYIQNVDHCITHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDE 453 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + E A+C L + NL A NN + ++LA AVR LD ++D + I AK+ Sbjct: 454 NGEIALCTLSAFNLGA--INNLDELEELAIL---AVRALDALLDYQDYPIPAAKRGAMGR 508 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G++ F L Y+ A + ++ E I ++ + AS ELA+E+GA F Sbjct: 509 RTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNE 568 Query: 714 SLWDQGVFPIDS 725 + + +G+ PID+ Sbjct: 569 TTYAKGILPIDT 580 >gi|167041120|gb|ABZ05880.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine microorganism HF4000_001A02] Length = 817 Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 164/629 (26%), Positives = 272/629 (43%), Gaps = 98/629 (15%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFM 352 LG +L ++Y P + R A LA E K+ R +FY +L F F Sbjct: 57 LGADVLKNKYLAPWENH----PYELWQRQAKALASVERTKKLRDTWEKKFYYILEDFRFT 112 Query: 353 CSTPTLFNSGTRH--PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +G L++C++ + DD + I+ ++E A KY GG G+D + +R Sbjct: 113 PGGRIMHGAGREDITTTLNNCYVVGIQDDSINSIYRTIEEEARTYKYGGGCGHDLSVLRP 172 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G I GT G+S G + F+ + ++ + Q G+R GA L H D+E+F++++ T Sbjct: 173 SGDAIKGTGGESCGPVGFMNLFSENTNTIAQHGRR-GANMQTLRVDHPDIEKFIEIK--T 229 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 GD + N + + FM+ V ++ EF++ + + Sbjct: 230 GDIHMVKYS-NISVLLTHRFMEAVENDS-------------------EFDLKWND----- 264 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 +V++ I A LW K++ + P + F D ++ + S+N C E Sbjct: 265 -----QVYKTIKARQLWNKIIEHAHTSAEPGLLFWDTMIDYHNAEYCSPLVSTNPCAEQP 319 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINC--HTIEK 645 L + CNLGSINL F + + ++ D+ T+ A R LDNVID N H +E Sbjct: 320 L----PDGGCCNLGSINL-ERFVDGEGNFMIDEFKDTVGIATRFLDNVIDYNLERHALES 374 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K + R IGLG++G L + I Y S +A++ ++ M+ A SVELA E+ Sbjct: 375 QKDNATKDRRIGLGILGLGDMLVRMGIKYDSDDAIQTVEQVMQIFRDGAYETSVELANEK 434 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G++ SF + + + F LP + L ++K G+RNS + Sbjct: 435 GSFPSFDWAGYRKSQF-------------------IKNLPRN-LNNKIKENGIRNSTVLT 474 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 + PT + A + V+ I+P + Y + +K+ D + + Sbjct: 475 VPPTGSGAIVARVTSGIEPIFATSYTR----------------RVKKNDGFGKTFNEYKV 518 Query: 826 YH---DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-S 881 YH GN E +PD + H +IDP ++ QK+ID + S + L E + Sbjct: 519 YHPIIKKLFGNDENLPDYVISAH----DIDPYSRVKMQGVIQKYIDSSISSTVNLKEDVT 574 Query: 882 GKKLDFIYRQAWLMGLK--TTYYLRSRSA 908 + + IY A+ GLK T Y SR Sbjct: 575 LETVADIYMTAYKTGLKGITVYREGSREG 603 >gi|306830971|ref|ZP_07464133.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426994|gb|EFM30104.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 719 Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 168/689 (24%), Positives = 298/689 (43%), Gaps = 91/689 (13%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHING 311 PE+ +Y + +++ LA DL+ + F F+ ++ Y +Y L N Sbjct: 68 PEFISKYTPDFIES--------------LAKDLQ-AQGFRFKSFMAAYKFYQQYALKTND 112 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSS 370 + + ++ R+ E+ A + + + +TP+ N+G +R + S Sbjct: 113 GKYYL-ESIEDRILFNALYFADGNEELARDLATEMIHQRYQPATPSFLNAGRSRRGEFVS 171 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL +V DD+ I ++ L++ GG+G + +R GA I G G + GV+P +K+ Sbjct: 172 CFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGYEGAASGVVPVMKL 231 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G+R+GA YL+ +H D+ FL +K D++ R ++ +PD F Sbjct: 232 FEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKENADEKIRVKTLSLGITVPDKFY 291 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + N LFSP V + + +I E + A+ +K KI A L ++ Sbjct: 292 ELARNNEEMYLFSPYSVEREYGVPYSYVDITAEYDKMVANPNIVKT--KIRARDLETEIS 349 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV---- 599 + E+G+P++ D N +P G + SNLC+E+ +N + E + Sbjct: 350 KLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVLQVQTPSVINDAQEFVKMGTDI 407 Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIG 657 CNLGS N++ + F +I+ R L V D + + K N G Sbjct: 408 SCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVSDTSSIEAVPTIKHGNEQAHTFG 462 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG MG + L HI Y SPE++E + +++ + S +++ER + F+ S + Sbjct: 463 LGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESNHISRERQQTFVGFENSKY 522 Query: 717 DQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770 G + I G D + + +P W +L+ V T G+ + N +A+AP Sbjct: 523 ADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRDAVMTDGLYHQNRLAVAPNG 582 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ I VS S+ P Q + E +Q E I + Y Sbjct: 583 SISYINDVSASLHPITQRI-------------------EERQ-----EKKIGKIYYPAAG 618 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------ 882 + + + IP + +A+++D +I+ + + +DQ SL L+L D P G Sbjct: 619 L-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLFLRSDIPQGLYEWKT 672 Query: 883 ------KKLDFIYRQAWLMGLKTTYYLRS 905 + L + A+ +K+ YY+R+ Sbjct: 673 QSKQTTRDLSILRHYAFNKDIKSIYYIRT 701 >gi|312865007|ref|ZP_07725235.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] gi|311099118|gb|EFQ57334.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] Length = 725 Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 161/606 (26%), Positives = 270/606 (44%), Gaps = 94/606 (15%) Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L S + +TPT N+G R ++ SCFL + D + I + L++ GG+G + Sbjct: 150 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRGINSALQLSRIGGGVGVNL 209 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G+ I GV+P +K+ D+ NQ G+R GA YL +H D+ FL Sbjct: 210 SNLRASGSPIKRIAHAFSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILAFLS 269 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521 +K D++ R ++ +PD + + + N LF+P V YG+ F +I Sbjct: 270 TKKENTDEKIRVKTLSLGLVVPDKYYELLKTNQPMYLFNPYHV---ERAYGRPFSYVDIT 326 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E Y++ I+ I+A L +++ + E+G+P+I D N +P + G + Sbjct: 327 AE-YDKLVANPAIEKM-VINARELEQEISRLQQESGYPYILNIDSANRSNPVK--GRIIM 382 Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI TLN V CNLGS+N++ + F +I AV Sbjct: 383 SNLCSEILQPQEPSTLNRDLTYQEVGTDISCNLGSMNMVNLLRSPDF-----GKSIEYAV 437 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D + + K N + IGLG MG +AL L + Y S EA+E D Sbjct: 438 RALTTVTDSESIEEVPTVAKGNALYHTIGLGAMGLHTALALNGLNYDSKEALEFVDAFFL 497 Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN-------- 739 ++++++ AS ++A E+ + F+ S + G + D ++D+ + Sbjct: 498 AMNYYSLKASHQIALEKKQVFHDFEASKYADGSY-FDQY-----LQDDFHFDFPQVAKSF 551 Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 T LP W LK+ V G+ + N +A+AP +I+ I S S+ P Q + Sbjct: 552 ETIHLPSLEDWQALKEAVMADGLYHRNRLAVAPNGSISYINETSASLHPITQLI------ 605 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 E +Q E + + Y + N D + TA+++D Sbjct: 606 -------------ENRQ-----EKKVGSIFYPAPYLSN------DTISHYKTAYDMDQRK 641 Query: 856 LIESASRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKT 899 +I+ ++ QK +DQ SL L++ D P + + L+ + AW G+K+ Sbjct: 642 IIDIYAQAQKHVDQGLSLTLFMRSKLPQGLYEWKKPDHPNLTTRDLNKLRNYAWTKGIKS 701 Query: 900 TYYLRS 905 YY+R+ Sbjct: 702 LYYVRT 707 >gi|294338105|emb|CBJ93943.1| Probable phage ribonucleotide-diphosphate reductase alpha subunit [Campylobacter phage CP220] Length = 898 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 171/654 (26%), Positives = 291/654 (44%), Gaps = 65/654 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ ++G F+++++ + AC L DV ++ + ++DG D++ +LI Sbjct: 6 IHIVKNNGEREIFDAEKIHKHLHFACQNL-DVDIISIIKDARLKIFDGAKSVDIQDSLIK 64 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S++ I E P+Y V R L +KLR+EV YK+ P F ++E Sbjct: 65 SAQEKISEDSPDYELVAGRLLNQKLRKEV----YKQ-----------YTPLDFKSQVKER 109 Query: 264 VKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 +K E + D +L Y + + YE D Y L +Y +Y + N IE+PQ Sbjct: 110 IKKGFYTEDLNAYSDEELDYFGSLINYELDNELPYSALNQMYSKYLIKHNKKCIEVPQEV 169 Query: 321 FMRVAMGLALK-ETEKEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ + M + + E K+ V+ Y LLS TP + + T + + SC L D Sbjct: 170 FILIPMAIFYNTDIEYRKKYVKLGYELLSQRKISLPTPIMNGARTSYKKFISCNLLNFGD 229 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ-----GVIPFLKVAND 433 + L+ GLG + + +RGLGA + GK G++P +K Sbjct: 230 SVESFARGLEAVLKCTSAKSGLGINTSFIRGLGAPV----GKPSRLDHTGMLPIVKAIES 285 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 A+ Q G R GA + +H ++E F L + G R + I F+++ Sbjct: 286 ATSALVQHG-RGGASNLSMPFFHYEIELFSQLGDSKGSLENRARHTDQTIIINKWFLEKA 344 Query: 494 TQNAGWTLFSPDEVS------DLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVAL 545 LF + V DL+D G K F+ Y++Y + K +KI++ L Sbjct: 345 LNKEDIFLFHMNAVGNKDPKLDLYDALGDYKRFDELYKHYSAKVPN---KSKKKINSYDL 401 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EET 597 ++ TG +I F D S ++++ + +NLC EI++ S S E Sbjct: 402 LSLIINERMITGRVYIVFADNFVNSSFKENL---YMTNLCCEISVPSHSLDNYRGIPGEL 458 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 C LG+IN H + + D K+A + VR LDN+IDI+ + + + S R +G Sbjct: 459 GTCILGNINF-GH--SKESDIPKVADFL---VRFLDNMIDISDFAMPEIEYSATKRRTLG 512 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G+ L + Y + EA E ++ ME F+ + S++LA+ERGA + S + Sbjct: 513 IGVSNLFGYLAKSKLFYNTKEAREHINDLMELFYFNLVKTSIDLAKERGACELYNESFYS 572 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F + L A ++ E ++L W+ L++ + GMR+S+ A+ P Sbjct: 573 DNKFIFERY-LEAGIKPEFK----TKLDWESLREELSKYGMRHSSLSAVPPAGN 621 >gi|315648443|ref|ZP_07901542.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus vortex V453] gi|315276137|gb|EFU39483.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus vortex V453] Length = 884 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 120/434 (27%), Positives = 208/434 (47%), Gaps = 35/434 (8%) Query: 368 LSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D G I L E + GG+G + + +R A + G NG S G + Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + WH DVE+F+ +++ G + + N + + Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG-EIKVFRKISAVAL 545 + FMK V ++ W L PD +D E+ + E+ + G + ++ + A + Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPDYD------ELWDGDLEKWKNAGHSVIPYKTVRAREV 312 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ +++ P + F + N S + + +N C E L VCNL ++ Sbjct: 313 WHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAM 368 Query: 606 NLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + AN+ +++LA+T R +VR LDNVID + E+ + + R +GLG MG Sbjct: 369 NLSKFYDEANHDVAWEELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGL 428 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + L+I Y SPE++E D+ FI+ A AS ++A+E+G++ +F L+ Q F Sbjct: 429 AELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGF-- 486 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +AEV E+A V+ G RN + APT + + G S I+ Sbjct: 487 --MKNMAEVYPEVA-------------DAVREKGARNVTVITQAPTGSTGTMVGTSTGIE 531 Query: 784 PSYQNLYVKSNMSG 797 P + Y + + G Sbjct: 532 PYFAFKYFRQSRLG 545 >gi|167838948|ref|ZP_02465725.1| ribonucleotide reductase system [Burkholderia thailandensis MSMB43] Length = 843 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 161/608 (26%), Positives = 274/608 (45%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGIAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G R+ D G + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+D LA RT VR LD+V+D+ + + ++ R Sbjct: 312 LNLTRFVIDPFAQLDGGASAFDWDALAERTRTQVRFLDDVLDVTLWPLLEQRREAEQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G AL +L + Y + E + A + A ASVELA+ERGA++ F S Sbjct: 372 IGIGFTGLGDALVMLGLRYDTQEGRDFAARVGREMRDAAYRASVELARERGAFALFDASR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D++++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLP-DDIQEAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 +++ +PD +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 519 DVDALPD----CFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|113868364|ref|YP_726853.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia eutropha H16] gi|113527140|emb|CAJ93485.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia eutropha H16] Length = 827 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 173/647 (26%), Positives = 286/647 (44%), Gaps = 86/647 (13%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 AND A + + ++L ++Y S ++ Q RVA LA E E ++ A Sbjct: 3 ANDQIIRGALAPQEISTEVLIEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWS 58 Query: 342 FYNLLSSFH-FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAM 392 L + + F+ + +GT L +CF+ V D + I+ A+ + A Sbjct: 59 ARFLWAQENGFVPAGRINSAAGTGIQATLINCFVQPVGDSVSEPREGRPSIYTAVAQAAE 118 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 + GG+G D++ +R GA + T+ ++ G + F+KV + + V G R+GA L Sbjct: 119 TMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVL 178 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+E F+ K+ GD + N + + D FM+ V + EV +H+ Sbjct: 179 RCDHPDIESFIHA-KDKGD----LSNFNISIGVTDAFMQAVQADG--------EVELVHE 225 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 IA Y R D G+ V+R++ A LW +++ ++ P I F N + Sbjct: 226 AEPGADMIAAGAYRR--DDGQW-VYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNN 282 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRT 627 + + ++N C E L S C LGSINL +FD+D A +R Sbjct: 283 LYYCERIEATNPCAEQPLPS----YGCCCLGSINLTRFVRQPFSPQAEFDFDAFAEVVRV 338 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A R+LDNV+D+ + + + H R +GLG +G SAL +L + Y + A ++A Sbjct: 339 ATRMLDNVLDVTFWPLPEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARIS 398 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E + A AS ELA E+GA+ F + + Q F RLP + Sbjct: 399 ERMRDDAYLASTELAVEKGAFPLFDANAYLQSGF-------------------AGRLP-E 438 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 L+ + G+RNS+ ++IAPT TI A S I+P++ Y + D Sbjct: 439 RLRDAIARNGLRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRKKRMPD------- 491 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESASR 862 N + ++ D A L H G+ ++ ++PD TA + +D M ++E+ Sbjct: 492 --NSYRSFEVADHAW--RLYRHMGA--DMAQLPDAF----VTALQMSALDHMRMLEAV-- 539 Query: 863 RQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 Q +ID ++++N+ D P + +Y +AW GLK R S Sbjct: 540 -QPYIDTSISKTVNVPEDYPY-EAFRNLYLEAWKAGLKGLATYRPNS 584 >gi|186472165|ref|YP_001859507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phymatum STM815] gi|184194497|gb|ACC72461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phymatum STM815] Length = 851 Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 160/602 (26%), Positives = 264/602 (43%), Gaps = 80/602 (13%) Query: 321 FMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 + RVA G+AL E E + A+E F L + L +CF+ V D Sbjct: 46 YRRVARGVALAEPEALRPAIEARFVENLQNGALGAGRIMSAAGAGIQATLINCFVQPVGD 105 Query: 379 D--------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L GI+ AL + A + GG+G +++ +R GA + T + G ++ V Sbjct: 106 SIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGARVKTTGSSASGPCSYIDV 165 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + + V G R+GA A L+ H D+ EF+D + + G R ++ N + + D FM Sbjct: 166 FDASCRTVESAGSRRGAQMAVLDCTHPDLLEFIDAKHSKG----RWNNFNVSVAVTDEFM 221 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + V +A W L E + + N RQ D G + V+ + A ++ +++ Sbjct: 222 QAVENDAMWQLVHRAEPTP---------ALRAANDVRQRDDG-MWVYSERRAKEIFDRIM 271 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609 ++ P I F N + + V + ++N C E L CNLG +NL Sbjct: 272 RSTYDIAEPGIVFISRMNDDNNLRAVESIRATNPCGEQPL----PPYGCCNLGPLNLTRF 327 Query: 610 --------HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 H FD+D LA RT VR LD+V+D+ +E+ + R IG+G Sbjct: 328 VLDPFAQRHGGKPSFDWDALAQRTRTQVRFLDDVLDVTLWPLEQQYDESRAKRRIGVGFT 387 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ-GV 720 G L ++ + Y S E + A + + A ASVELA+ERGA+ F + Q G Sbjct: 388 GLGDTLVMMGLRYNSQEGRDFAVRIAKLMRDEAYRASVELARERGAFPLFNAKQYLQDGT 447 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778 F SRLP D++K+ ++T G+RNS+ ++IAPT T+ A Sbjct: 448 F-------------------ASRLP-DDVKEAIRTHGIRNSHLLSIAPTGTVSLAFADNA 487 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++ Y ++ + + + F V + R L+ E G++ +P Sbjct: 488 SNGIEPAFSWTYTRTKVMANGS-REQFAVEDHAYR-LYRELG-----------GDVGHLP 534 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896 D +A E+ ++ + Q +ID ++++N+ D P + +Y AW G Sbjct: 535 D----YFVSALEMSARDHLDMMAAVQPYIDTSISKTVNVPADYPF-DAFENLYFDAWKGG 589 Query: 897 LK 898 LK Sbjct: 590 LK 591 >gi|323342960|ref|ZP_08083191.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463024|gb|EFY08219.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix rhusiopathiae ATCC 19414] Length = 704 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 170/671 (25%), Positives = 298/671 (44%), Gaps = 96/671 (14%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI--EMPQAFFMRVAMGLALK 331 F+ + D+ Y+ F F Y+G Y+ Y L I+ R+ E + +A+ A Sbjct: 78 FEQIQAVYDIAYDAKFRFPTYMGAFKFYNDYALKSIDAERVFLERYEDRLSVIALYHADG 137 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQEN 390 + E K+ + L + F +TPTL N+G + + SCFL V D L I +QE Sbjct: 138 DFELAKKLI---TSLIAQDFTPATPTLLNTGKKKRGEFVSCFLLEVDDSLNDI-ARVQEF 193 Query: 391 AM-LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 AM L+K GG+ + T +R G I ++GV+ K+ ++ +Q G+R+GA Sbjct: 194 AMQLSKLGGGVSINLTNLRAKGESIKDIPNVAKGVVGVAKLLDNAFRYADQMGQRQGAGA 253 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL +H D+E+FL +K DD R ++ +PD ++ ++ +F P Sbjct: 254 VYLNVFHADIEDFLQTKKLNADDDVRVKTLSMGVVMPDKMIELAREDKDMYVFYP----- 308 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVF-------RKISAVALWRKMLTMLFETGHPWIT 562 H +Y KE+ I + + + D K+ RKI+ L+ + + E+G+P+I Sbjct: 309 -HTVY-KEYGIPFSDVAIKMDEWYDKLVENPNVRKRKINPRKLFDMIAQLQGESGYPYIM 366 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------SSEETAV---CNLGSINLL 608 + D N +P + SNLCTEI S +E + CNL S ++ Sbjct: 367 YADNVNKENPL--ADPIKFSNLCTEILQPSIVSHYGDYHRRDEDEIGLDISCNLASGHMG 424 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 NN + T+ A+ ++++V + N + ++N R++G G+MG + Sbjct: 425 NMIKNNS-----IKETVFAAMEIMNSVSEKTNIAHVPAVARANRIMRSVGFGVMGHHGYI 479 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG------- 719 I Y S E +++ D I+++++ S+E A+E G + F+ S + G Sbjct: 480 AENFIAYGSEEDIDLIDVFFSLINYYSLVHSMEKAKETGEKFYGFERSSYADGSYFNDRG 539 Query: 720 -VFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 V P + GLLA+V E+ + W +LK+ V G+ NSN +A+AP +IA + Sbjct: 540 QVLPKTEVVKGLLADV--EIPTDED----WAQLKEDVMAYGLYNSNRLAVAPNGSIAYVM 593 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 + S+ P +KQ ++ + Y + Sbjct: 594 SATPSLTP-------------------------IKQ-------VVEERTYGNSKTYFPMP 621 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 D ++ +A+++D +I+ + QK +DQ S L + + + + L Y A Sbjct: 622 AADVAGFMYESAYQMDKYKIIDVIATAQKHVDQGISFELCITSDETTRSLQRYYLYAHYQ 681 Query: 896 GLKTTYYLRSR 906 G+KT YY R++ Sbjct: 682 GIKTLYYTRTQ 692 >gi|149408188|ref|YP_001294622.1| hypothetical protein ORF029 [Pseudomonas phage PA11] Length = 563 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 174/639 (27%), Positives = 263/639 (41%), Gaps = 118/639 (18%) Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G Q+ ++Y G + + R+A A + +K A +F+++L STP Sbjct: 29 GWQLFKEKYLWEARGLKDT-----YERIAKTAAQHTDDPDKWAAKFFDVLWRGWLAASTP 83 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 L N GT SC + D + G + A E AML K G +R G+ I Sbjct: 84 VLSNMGTIKGMPVSCSGQYIEDSIDGFYSAYHETAMLTKNGFGTSGYLGDIRPRGSII-S 142 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 T GK+ G +P K V QG R+GA YL H D E +D KN DD Sbjct: 143 TGGKASGTLPIFKHFVQDMRDVAQGTSRRGAWAGYLPIDHGDFYEIVDYLKNFPDDL--- 199 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA--DRGEI 534 N GW L QA DR E+ Sbjct: 200 -------------------NIGWNL-------------------------SQAFIDRLEV 215 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GV-VHSSNLCTEITLN 591 + AV +++ + + TG + D N +PQ + G+ V +SNLCTEITL Sbjct: 216 G---DVDAVQRFQRAMYVKAITGKGYFFKPDTVNAMNPQVYKDRGLEVKASNLCTEITLF 272 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV------IDINCHTIEK 645 S + T C L S+NL ++D K + + LD V + EK Sbjct: 273 SDEDHTFTCVLSSMNL------EKYDEWKNTDAVFVSTVFLDCVAQEFIRLAKGQKGFEK 326 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + + RA+GLG +GF + L IP S EA I E + + A A+ +A+ Sbjct: 327 SVRFTEASRALGLGALGFHTYLQAKMIPLESFEAHMINLEIFQHLHEEATRATKWMAKAW 386 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G KG G+RN++ +A Sbjct: 387 GEPEWCKG------------------------------------------YGVRNTHLLA 404 Query: 766 IAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 IAP + A ICG VSQ I+P NLY + +G+ VN +N K+R W + ++ DL Sbjct: 405 IAPNTSSALICGGVSQGIEPVVANLYNQPTSAGEIYRVNPVFLNLAKKRVGWTDELVKDL 464 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 +GS+ +++ + K + TA+E+D L+ A+ RQ +I QAQS+NL+ D S Sbjct: 465 IKSEGSVQHLDWLSPKEKAVFKTAYEVDQAALVRLAAARQPYICQAQSINLFFDANESEA 524 Query: 884 KLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLKGVDG 921 + I+++A L +K+ YY+R+++ K + G Sbjct: 525 YIAQIHKEALLNPQIKSLYYMRTKAGVQASKGECEACSG 563 >gi|323529940|ref|YP_004232092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1001] gi|323386942|gb|ADX59032.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1001] Length = 859 Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 162/607 (26%), Positives = 268/607 (44%), Gaps = 90/607 (14%) Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA G+A E + +VE + L + M + T + L +CF+ Sbjct: 51 FRRVARGVAEAEPAALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 105 Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D L GI+ AL + A + GG+G +++ +R GA + T+ + G Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVRTTSSSASGPC 165 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V ++ W L E S G RQ + G + V+ + A + Sbjct: 222 TDEFMRAVEEDEPWQLVHRAEPSPALRAAGDV---------RQREDG-MWVYSERPAREI 271 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +++ ++ P I F N + + V + ++N C E L + CNLG + Sbjct: 272 WERIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 327 Query: 606 NL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL L FA + FD+D LA RT VR LDNV+D+ + + + R I Sbjct: 328 NLTRFVLDPFAQMKGGKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRI 387 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G L +L + Y S E + A + A ASVELA+ERGA+ F + + Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAARY 447 Query: 717 -DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G F SRLP D +K+ ++ G+RNS+ ++IAPT T+ A Sbjct: 448 LETGTF-------------------ASRLPED-IKEAIRRDGIRNSHLLSIAPTGTVSLA 487 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P++ Y + + D SF V + R L+ E G+ Sbjct: 488 FADNASNGIEPAFSWTYTRMKVMADGG-RESFDVEDYAYR-LYRELG-----------GD 534 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 + R+PD +A E+ ++ + Q ++D ++++N+ D P + + +Y Sbjct: 535 VNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYLD 589 Query: 892 AWLMGLK 898 AW GLK Sbjct: 590 AWKSGLK 596 >gi|18138465|ref|NP_542569.1| ribonucleotide reductase [Halorubrum phage HF2] gi|32453892|ref|NP_861655.1| ribonucleotide reductase [Halovirus HF1] gi|18000406|gb|AAL54989.1| ribonucleotide reductase [Halorubrum phage HF2] gi|32346460|gb|AAO61366.1| ribonucleotide reductase [Halovirus HF1] Length = 805 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 169/648 (26%), Positives = 275/648 (42%), Gaps = 130/648 (20%) Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTP 356 IL RYF + G+ IE F RVA +A E + + A EF + + + FM ++P Sbjct: 40 ILPARYFRKDSEGNIIEGADDLFRRVAENVAGAEEDGDFDTWADEFEHQMKTLRFMPNSP 99 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TL N+GT QLS+CF+ DD+ IF Q+ A++ + GG+G ++ +R GA I+ Sbjct: 100 TLMNAGTDMNQLSACFVIEPRDDMEDIFETAQQAALIFQSGGGVGYAFSHLRPKGAFINS 159 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 T G++ G + F++V ++T V QGGKR+GA L H D+ F+ ++N G+ Sbjct: 160 TGGEASGPVSFMRVFDETCNQVKQGGKRRGAQMGILRADHPDIGRFIVAKRNEGE----F 215 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQA-DR 531 + N + D F++ V +TL+ P +E + +L + Y++ R A D Sbjct: 216 ANFNISVATTDNFIEAVDAQESYTLYDPETDYEEPYTVRELSAHFYSPEYQDNPRDAFDD 275 Query: 532 GEIKVFR----------------------------------------KISAVALWRKMLT 551 GE V ++ A +W M+ Sbjct: 276 GEGAVVEENLWRDYADEIECELYGERVTLREKWEGHEGLRLEVGEPMELPAAFIWDVMID 335 Query: 552 MLFETGHPWI-TFKDPCNIRSPQQHVGVV--------HSSNLCTEITLNSSSEETAVCNL 602 + G P + F++ S +QH V +++N C E L E CNL Sbjct: 336 GAWRNGEPGLFNFEE-----SNRQHSFDVEEYPEFRMNATNPCAEQMLV----EYEACNL 386 Query: 603 GSINL--------------------------------LAHFANNQFDYDKLASTIRTAVR 630 G INL + + D+++L TI R Sbjct: 387 GHINLSLMLSEDAPTYDEFLSDKLEDVASGDLSTREAVEWYFETAVDFNELDRTIEAGTR 446 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNV+ + I + + R IGLG+MGF L+ + +PY + ++ E+A M +I Sbjct: 447 FLDNVVTQSDFPIPEITERVGGMRKIGLGIMGFAQMLYQMGVPYGTQDSYEVARCVMRYI 506 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSRLPWDE 748 AS LA ERGA+ S WD+ + P + DE RT P D Sbjct: 507 DRRGTWASHRLALERGAF-----SYWDKSKYADPTE--------YDEWFAARTGLDPED- 552 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS---NMSGDFTVV--N 803 +RN N IAPT T + I + +P+Y K+ ++ GD +V + Sbjct: 553 ---WAGGFPIRNHNITTIAPTGTTSMIGNTTGGCEPAYNVANFKNVSEDIQGDDLLVEFD 609 Query: 804 SFLVNELKQRDLWDEAMISD----LKYHDGSIGNIERIPDDLKKIHAT 847 + + L++ DL +A+ + ++ ++ N IPD++ +I T Sbjct: 610 DYFLRTLEENDLDVDAVKEEAETLMRNNEFDGVNDLSIPDEIAEIFVT 657 >gi|295699386|ref|YP_003607279.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1002] gi|295438599|gb|ADG17768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1002] Length = 861 Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 158/602 (26%), Positives = 266/602 (44%), Gaps = 80/602 (13%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPD 378 + RVA G+A E + + +VE + + H + ++ L +CF+ V D Sbjct: 54 YRRVARGVAEAEPPELRASVEEQFVDNMRHGALGAGRIMSAAGSGIAATLINCFVQPVGD 113 Query: 379 D--------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L GI+ AL + A + GG+G +++ +R GA +H T+ + G ++ V Sbjct: 114 SIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSAASGPCSYMDV 173 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + D FM Sbjct: 174 FDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGVTDEFM 229 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + V W L E S G RQ + G + V+ + A A+W +++ Sbjct: 230 RAVENEEPWQLVHRAEPSPALRAAGDV---------RQREDG-LWVYSEHPARAIWDRIM 279 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607 ++ P I F N + + V + ++N C E L + CNLG +NL Sbjct: 280 RSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPLNLTRF 335 Query: 608 ----LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 A Q FD+D LA RT VR LD+V+D+ + + + R IG+G Sbjct: 336 VVDPFAQLQGRQPSFDWDGLARRTRTQVRFLDDVLDVTLWPLPEQYAESRAKRRIGVGFT 395 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720 G L ++ + Y S E + A + A ASVELA+ERGA+ F + + + G Sbjct: 396 GLGDTLVMMGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFELFDAARYLEAGT 455 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778 F SRLP D+LK+ ++ G+RNS+ ++IAPT T+ A Sbjct: 456 F-------------------ASRLP-DDLKQAIRRDGIRNSHLLSIAPTGTVSLAFADNA 495 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++ Y + + D SF V + R L+ E G++ R+P Sbjct: 496 SNGIEPAFSWTYTRMKVMADGG-RESFDVEDYAYR-LYRELG-----------GDVTRLP 542 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896 D +A ++ ++ + Q ++D ++++N+ D P + +Y AW G Sbjct: 543 D----YFVSALQMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-DAFESLYFDAWKSG 597 Query: 897 LK 898 LK Sbjct: 598 LK 599 >gi|255656921|ref|ZP_05402330.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-23m63] gi|296452238|ref|ZP_06893945.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP08] gi|296877590|ref|ZP_06901621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP07] gi|296258925|gb|EFH05813.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP08] gi|296431441|gb|EFH17257.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP07] Length = 699 Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 149/587 (25%), Positives = 268/587 (45%), Gaps = 75/587 (12%) Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N+G R ++ SCFL +V D GI A+ + L+K GG+ + + +R Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G I G + GV+ K+ + NQ G R+G+ YL +H D E +D +K Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ IPD FM+ +N F P V + + E E+ + Y++ Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMN-KWYDKLV 322 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + +I+ ++I+ + K+ M E+G+P++ + D N + +G++ SNLC EI Sbjct: 323 NDNDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDIGIIKMSNLCCEIF 381 Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + E CNLGS+N+ N D + ST+ TA+R L V D Sbjct: 382 QYQTHSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + SN +IGLG M L +I Y S +A++ ++ + +++I Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---------- 745 AS+++A E+ + F S + +G + +L++ ++ + ++ ++ Sbjct: 497 ASMKIAIEKNQTFEGFDKSEYAKG----RNSKVLSKYYEQSYLPKSEKVKALFEGIYIPT 552 Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W +L VK G+ N+ MAIAPT +I+ + + SI P + + V++ GD T + Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAIAPTQSISYVQNSTSSIMPITEPVEVRT--YGDSTTI 610 Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 FL N+ ++ Y+ +A+ +D +I+ Sbjct: 611 YPMPFLTND-------------NILYYQ------------------SAYRMDMRKVIDLV 639 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S L++ DE + + + Y A+ GLK+ YY R++ Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|195941045|ref|ZP_03086427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC4024] Length = 552 Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 137/434 (31%), Positives = 211/434 (48%), Gaps = 33/434 (7%) Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F+ +LG Y Y L +G R +E + + VA+ LA + +R E +LS Sbjct: 97 FRFQTFLGAWKYYTSYTLKTFDGKRYLESFEDRTVMVALTLAQGDEALAERLTE--EILS 154 Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 155 G-RFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524 + D++ R ++ IPD+ K +N LFSP D+ +YGK F ++A E Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFKLAKENTEMALFSP---YDIERIYGKAFGDVAISEL 330 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ I+A ++++ + FE+G+P+I ++D N +P G ++ SNL Sbjct: 331 YDELVADDRIRK-NTINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387 Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI +NS+S CNLGS+N +AH D T+ TA+R L Sbjct: 388 CSEILQVNSASSYDENLDYADVGNDISCNLGSLN-IAH----TMDSPDFGRTVETAIRGL 442 Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D++ ++ + N AIGLG M L I Y SPE ++ + I+ Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTIT 502 Query: 692 FHAISASVELAQER 705 +HA+ S+ LA+ER Sbjct: 503 WHALHTSMRLARER 516 >gi|121592862|ref|YP_984758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax sp. JS42] gi|120604942|gb|ABM40682.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax sp. JS42] Length = 811 Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 168/635 (26%), Positives = 279/635 (43%), Gaps = 85/635 (13%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353 + + +L ++YF S +E F RVA LA E E ++A+E F + L + Sbjct: 17 ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDMRQALEARFLDNLRAGAIGA 72 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 + +GT L +CF+ V D + G I+ AL+E A + GG+G D+ Sbjct: 73 GR-IMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L +H E+ + Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWEL--------VHGA-APGAELQAQG 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++AD G+ V+R + A LW ++ ++ P I F D N + + + ++N Sbjct: 239 AHQRAD-GQW-VYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636 C E L C+LG I +L F N FD+D + T VR LDNV+ Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+ + + + + R IG+G G + L +L Y E ++A + E + A Sbjct: 352 DVTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRQEGRDMAVQIAERMRNAAYR 411 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ASVELA+E+GA+ F D+ G LA+ SRLP D ++K ++ Sbjct: 412 ASVELAKEKGAFPKF------------DADGYLAK------GTFASRLPAD-IQKAIRKH 452 Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS+ ++IAPT T+ A S I+P + Y + D + + ++V + R Sbjct: 453 GIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYAWR- 510 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872 + G++ +P A D + ++E+ Q ++D A ++ Sbjct: 511 -----------LYKTLGGDVNHLPAYFVSAMDMA-AADHVAMMEAV---QPYVDTAISKT 555 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +N+ D P +Y QAW GLK R S Sbjct: 556 VNVPEDYPY-DDFKGLYMQAWHSGLKGLATYRPNS 589 >gi|94311068|ref|YP_584278.1| ribonucleotide reductase large subunit [Cupriavidus metallidurans CH34] gi|93354920|gb|ABF09009.1| ribonucleotide reductase, coenzyme B12-dependent [Cupriavidus metallidurans CH34] Length = 832 Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 152/550 (27%), Positives = 250/550 (45%), Gaps = 80/550 (14%) Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L +CF+ V D + I+ A+ + A + GG+G D++ +R GA + T+ + Sbjct: 87 LINCFVQPVGDSVSQVRGGKPSIYTAVAQAAETMRRGGGVGYDFSSIRPGGALVRATHSR 146 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + F+KV + + V G R+GA L H D+E F+ + DR + N Sbjct: 147 ASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-----DRGDLTNFN 201 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D FM+ V + E+ +H+ IA Y R D G+ V+R++ Sbjct: 202 ISIGVTDEFMQAVAADG--------EIELIHEAEPGADGIAAGAYRR--DDGQW-VYRRV 250 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW +++ ++ P I F N + + + ++N C E L S C Sbjct: 251 PARRLWDQVMQATYDHAEPGILFLSRINADNNLYYCETIEATNPCAEQPLPS----YGCC 306 Query: 601 NLGSINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 LGSINL F + FD++ A +R + R+LDNV+DI + + + R Sbjct: 307 CLGSINLTRFVRRPFTDQASFDFEAFAEVVRVSTRMLDNVLDITYWPLPEQQAEAQAKRR 366 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG +G SAL +L Y + A +A E + HA ASVELA+E+G + F Sbjct: 367 IGLGFLGLGSALVMLGHRYDTDAARALAGRISETMRDHAYLASVELAEEKGRFPLFDADA 426 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 + G F SRLP + ++ ++ G+RNS+ ++IAPT TI A Sbjct: 427 YLSGGF-------------------VSRLP-EPIRDAIREHGLRNSHLLSIAPTGTITLA 466 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P++ Y + D + +F V + R L H G G+ Sbjct: 467 FADNASNGIEPAFSWTYNRRKRMPDDS-YRTFEVADHAWR----------LYRHMG--GD 513 Query: 834 IERIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFI 888 +E++P+ TA + ID M ++E+ Q +ID ++++N+ D P + + Sbjct: 514 VEQLPESF----VTALQMSAIDHMRMLEAV---QPYIDTSISKTVNVPEDYPY-EAFRNL 565 Query: 889 YRQAWLMGLK 898 Y +AW GLK Sbjct: 566 YLEAWKAGLK 575 >gi|194172963|ref|YP_002003607.1| ribonucleoside triphosphate reductase alpha chain [Escherichia phage rv5] gi|114796001|gb|ABI79175.1| ribonucleoside triphosphate reductase alpha chain [Escherichia phage rv5] Length = 771 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 199/839 (23%), Positives = 348/839 (41%), Gaps = 104/839 (12%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ +G ++F+ +RL G + S + + YK +YDG + ++ A+I S Sbjct: 4 KVIKSNGCEVAFDPERLNKAAIFGDDGNGNWSH--IALDAYKRLYDGCTTKEVNQAIIDS 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + K+ ++++ R L+ ++ +E K P P ++ +E+G Sbjct: 62 CVS--RKDEEHSRMAGRVLIGQIYKEAFGGFTKIPS----------LPSFYNTMVEKGYW 109 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323 + + +L L + + +D + Y L+ D+Y + + + E PQ FM Sbjct: 110 EDMGYSFT---ELNTLDAVIDHSKDLGYGYAVLKQFRDKYGIKDTLKDTLFESPQMMFMG 166 Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +AM + +K KE+R V+ Y LS TP L T +SC + D Sbjct: 167 IAMAV-MKNMPKERRINDVVKLYTYLSDLKINAPTPYLNGLRTGKTGYASCCVIKADDTA 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A + + G+G + R G + G K G IP+ + D V N+ Sbjct: 226 KSIGVAREVAYTMTVNQAGIGY-YLSSRSAGDGVRGNTIKHMGKIPYYR-GIDAGVKENR 283 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 R G+ ++E + LR +R + M+ + I F+ RV +N W Sbjct: 284 QQSRGGSATVSFLALDPQIDELIRLRNPMTVASKRINTMDYSIGINRSFINRVAKNLDWM 343 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIKVFRK--ISAVALWRKMLTMLFETG 557 L S LH+ F ++ E ++ + DR + K I A L ++LT E G Sbjct: 344 LVSYKHAPQLHE---GIFTMSMEEFDAEVDRIAKDDSIPKTWIRARDLAVELLTQRIEVG 400 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------EETAVCNLG 603 ++ + D N +P + V ++SSNLC EI L + E A+C L Sbjct: 401 RLFVYWTDEMNRHTPFKDV--IYSSNLCAEIALPTKGYSDMRNIFKHDVDDGEVALCFLS 458 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S L+A + +Y+ +A V ++DNV++I + E + + R+IG+GL Sbjct: 459 S--LVAGRVTPE-EYEDVA---YYTVLMIDNVMEIMTYPYENMESTVKKRRSIGVGLTNV 512 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + + Y SPE+ ++ + E S+ AS+ LA+ERG + + +G PI Sbjct: 513 AHFIASHKVTYGSPESKQLVHDLAELHSYSLHKASLRLAKERGVCEWMHKTKYPEGWLPI 572 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ EV D + + + + W+ L+K ++ G+RNS A P + + + + Sbjct: 573 DTYN--KEV-DSVVKDPSLKQDWEGLRKEIIENGGLRNSVLEAYMPNESSSLATNTTNGV 629 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P +++ K + G F+V + D+LK Sbjct: 630 YPVREHIIFKKSPQGQVL----FIVPDY----------------------------DELK 657 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK--------KLDFIYRQAWL 894 + + +A+++D +I+ + QK+ QA S +LY+D K +L ++ R A Sbjct: 658 EYYTSAWDVDTNDMIDMYAVIQKFTGQAISADLYIDYTKLKDGKISMKEQLGYLIR-ATK 716 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 G+KT YYL SR S + + K A T N I S D CE C Sbjct: 717 FGMKTWYYLNSRVGAG--DSLAEELHAKKQAEDETRKNYPL----IADSSVEDPYCESC 769 >gi|295690403|ref|YP_003594096.1| ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] gi|295432306|gb|ADG11478.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caulobacter segnis ATCC 21756] Length = 747 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 166/627 (26%), Positives = 263/627 (41%), Gaps = 94/627 (14%) Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTV 376 + RVA +A E + + A +F + L F FM + +GT R L +CF + T+ Sbjct: 33 WRRVAEAIAQAEPAEAREAWREKFLDALGDFQFMPAGRIFAGAGTGRAVTLFNCFVMGTL 92 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PDDL GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 93 PDDLPGIFEHLREAAVTLQQGGGVGMDFSTIRPSGAPVRGVGADASGPLSFMDVWDSMCR 152 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + G+R+GA+ L H D+E F+D ++ + R + N + + D F++ + + Sbjct: 153 TILSAGQRRGAMMGCLRIDHPDIEAFIDAKR----EPTRLRNFNLSVLVTDAFLEALAAD 208 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 A W L ++G E VF+ + A LWR+++T + Sbjct: 209 ADWPL-----------VFGGE------------------VFKTVRASDLWRRLMTATYAY 239 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFA 612 P + F D N R+ + +SN C E L C LGSINL A F Sbjct: 240 AEPGVIFVDRVNARNNLADCETICASNPCGEQML----PPYGACLLGSINLARLVAAPFT 295 Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D +KLA A+R LD+VID++ +E + R +GLG+ G AL Sbjct: 296 EGAVLDEEKLAELTHVAIRFLDDVIDVSRFPLEAQAEEARAKRRLGLGVTGLADALIFCG 355 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y S EA + + I A AS LA E+G Y LWD V +D LL Sbjct: 356 QRYGSQEAAQTIKRWLGIIKREAYRASAALAAEKGPY-----PLWDPRV--LDRPNLL-- 406 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790 EL D+ + + G+RN +IAPT T + + G VS ++P + Y Sbjct: 407 ---ELD---------DDTRALIAKHGLRNGCLTSIAPTGTTSLVAGNVSSGVEPVFAYAY 454 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + D +Q + D A+ + H G E D + +A Sbjct: 455 SRKVRQPD---------GSTRQEAVEDYALTVWKRLH----GETEPPAD----VFVSAQT 497 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLKTTYYLRSRS 907 + P + + Q ID S++ ++ P+ D +Y + W MG K R + Sbjct: 498 LTPREHLVMQAAAQSMID--SSISKTVNCPADIAFDAFCDVYLEGWRMGCKGLTTYRPNA 555 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSS 934 T ++ VD P + P ++ Sbjct: 556 VT----GSVLSVDTPPAEPPASTPEAT 578 >gi|326402358|ref|YP_004282439.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium multivorum AIU301] gi|325049219|dbj|BAJ79557.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium multivorum AIU301] Length = 761 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 160/607 (26%), Positives = 263/607 (43%), Gaps = 93/607 (15%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378 + RVA LA E E FY L F F+ + + +GT R L +CF + + D Sbjct: 48 WRRVARALAETEREPSSWEAPFYEALRDFRFVPAGRIISGAGTARRVTLFNCFVMGDIED 107 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL IF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 108 DLGRIFAHLREAALTMQQGGGIGYDFSSIRPKGAAVRGVGADASGPLSFMDVWDSMCRTI 167 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 G R+GA+ A + H D+E F+ ++ G R + N + + D FM+ V +A Sbjct: 168 MSAGARRGAMMATMRCDHPDIEAFIAAKREPG----RLRNFNLSVLVTDDFMRAVEADAA 223 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L E KV+R + A ALW + ++ Sbjct: 224 WDLVF-----------------------------EGKVYRTLQARALWEAITRATYDYAE 254 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616 P + F D N R+ + +H++N C E L C LGSINL A + F Sbjct: 255 PGVIFIDRINKRNNLYYCETIHATNPCGEQPLPP----YGACLLGSINL-ARLVRDPFGS 309 Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +LA + AVR+LD+ ID + +E ++ R +GLG+ G AL + + Sbjct: 310 GARIDEAELAELVTIAVRMLDDTIDASGFPLEAQREEAVAKRRVGLGMTGLADALMMCGL 369 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-GLLAE 731 Y +PEA A + I A AS LA E+GA+ + + + G ++I GL + Sbjct: 370 RYGTPEAAARAGDWARQIERAAYLASAALAAEKGAFPLYDAAQYLAG----ETIAGLDED 425 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790 VR +A + G+RN+ ++APT TI+ + VS ++P + Y Sbjct: 426 VRAAIAAH-----------------GIRNALLTSVAPTGTISLLSDNVSSGVEPVFALAY 468 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAM-ISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + + D ++ ++ D A+ + K+ +G+ L TA Sbjct: 469 TRKVLQRD---------GSRREEEVTDYALRLFRAKFGEGA---------PLPAHFVTAQ 510 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLK--TTYYLRS 905 E+ P + + Q+ +D A S + + E G + DF +Y A+ G K TTY + Sbjct: 511 ELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFE-DFQEVYLDAYRSGCKGCTTYRPNA 569 Query: 906 RSATSVE 912 + + +E Sbjct: 570 VTGSVLE 576 >gi|88801651|ref|ZP_01117179.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Polaribacter irgensii 23-P] gi|88782309|gb|EAR13486.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Polaribacter irgensii 23-P] Length = 592 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 150/595 (25%), Positives = 249/595 (41%), Gaps = 126/595 (21%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +FY +++ ++ S+P N G + SCF + V DD+ I + E M++K GG Sbjct: 82 KFYKYMAAGYYSLSSPVWSNFGKKRGLPISCFGSHVADDMGDILYSQSEVGMMSKLGGGT 141 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +R GA + NG S G + +++ V+QG R+G YL H D++ Sbjct: 142 SGYFGKLRKRGADVK-NNGSSSGSVHIMQLFEKMVDVVSQGSVRRGRFSPYLPVDHPDIK 200 Query: 461 EFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFL++ + TH + ++ W+ ++ V + + Sbjct: 201 EFLEIGTEGNPIQELTHGVTVSDQWMEEMIAGDVEKRS---------------------- 238 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN-----IRSPQQ 574 +W K+L E G+P+I F+D N + + Sbjct: 239 -------------------------IWAKILQRRGEIGYPYILFRDNANNGTVDVYKDKN 273 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 H +++SNLCTEI L S+ + + VC L SINL+ ++ K + T LD Sbjct: 274 HE--IYASNLCTEIMLPSNDDWSFVCCLSSINLV------HYEEWKDTDAVETLAYFLDA 325 Query: 635 VID------------------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 V++ +EKA +RA+GLG +G+ S L + + S Sbjct: 326 VMEEFITKLEVYKDSSKRDDQFTFRFMEKAYNFAKDNRALGLGALGWHSLLQSKMLAFDS 385 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ E + I + AS E+A G + KG Sbjct: 386 QEAYDLNTEIFKVIKEKSYKASEEMATLYGEPAVLKG----------------------- 422 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795 G RN+ AIAPT + A I G VSQ I+P + N+YVK Sbjct: 423 -------------------YGRRNTTLNAIAPTTSSAFILGQVSQGIEPIWSNIYVKDIA 463 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 T+ N L L+ + + ++ +DGS+ ++ + D K++ T EID Sbjct: 464 KIKTTIRNPVLEKLLEDKGESTSDVWKSIRDNDGSVQHLAILTDAEKEVFKTYSEIDQKV 523 Query: 856 LIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 ++ A+ RQ IDQ QS+N+ + D P K+++ +Y AW +G+K+ YY S +A Sbjct: 524 IVYQAANRQNHIDQGQSINIMVHPDMPI-KEVNDVYITAWKLGVKSMYYQHSMNA 577 >gi|148259205|ref|YP_001233332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidiphilium cryptum JF-5] gi|146400886|gb|ABQ29413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidiphilium cryptum JF-5] Length = 761 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 158/606 (26%), Positives = 261/606 (43%), Gaps = 91/606 (15%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378 + RVA LA E E FY L F F+ + + +GT R L +CF + + D Sbjct: 48 WRRVARALAETEREPSSWEAPFYEALRDFRFVPAGRIISGAGTARRVTLFNCFVMGDIED 107 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL IF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 108 DLGRIFAHLREAALTMQQGGGIGYDFSSIRPKGAAVRGVGADASGPLSFMDVWDSMCRTI 167 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 G R+GA+ A + H D+E F+ ++ G R + N + + D FM+ V +A Sbjct: 168 MSAGARRGAMMATMRCDHPDIEAFIAAKREPG----RLRNFNLSVLVTDDFMRAVEADAA 223 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L E KV+R + A ALW + ++ Sbjct: 224 WDLVF-----------------------------EGKVYRTLQARALWEAITRATYDYAE 254 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616 P + F D N R+ + +H++N C E L C LGSINL A + F Sbjct: 255 PGVIFIDRINKRNNLYYCETIHATNPCGEQPLPP----YGACLLGSINL-ARLVRDPFGS 309 Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +LA + AVR+LD+ ID + +E ++ R +GLG+ G AL + + Sbjct: 310 GARIDEAELAELVTIAVRMLDDTIDASGFPLEAQREEAVAKRRVGLGMTGLADALMMCGL 369 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-GLLAE 731 Y +PEA A + I A AS LA E+GA+ + + + G ++I GL + Sbjct: 370 RYGTPEAAARAGDWARQIERAAYLASAALAAEKGAFPLYDAAQYLAG----ETIAGLDED 425 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790 VR +A + G+RN+ ++APT TI+ + VS ++P + Y Sbjct: 426 VRAAIAAH-----------------GIRNALLTSVAPTGTISLLSDNVSSGVEPVFALAY 468 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAM-ISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + + D ++ ++ D A+ + K+ +G+ L TA Sbjct: 469 TRKVLQRD---------GSRREEEVTDYALRLFRAKFGEGA---------PLPAHFVTAQ 510 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTYYLRSR 906 E+ P + + Q+ +D A S + + E G + +Y A+ G K TTY + Sbjct: 511 ELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFEAFQEVYLDAYRSGCKGCTTYRPNAV 570 Query: 907 SATSVE 912 + + +E Sbjct: 571 TGSVLE 576 >gi|82492125|gb|ABB77922.1| ribonucleotide reductase alpha chain [Environmental halophage 1 AAJ-2005] Length = 569 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 154/592 (26%), Positives = 252/592 (42%), Gaps = 122/592 (20%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A FY +S + ++P N G SCF + + D+ + E + K G Sbjct: 62 ADRFYEYMSRGFYSLASPVWSNFGLDRGLPISCFGSYIEDNTESLLYTQAEVGEMTKLGG 121 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G + +R G+ I NGKS G F ++ + ++QGG R+G Y++ H D Sbjct: 122 GTSGYFGNLRPRGSSIT-NNGKSNGSYSFTELFDTEISVISQGGTRRGQFAGYIDVEHDD 180 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 ++E+L++ K GD + +M I D + + ++ DE Sbjct: 181 LDEWLNI-KTEGD---KIQNMYYGVIIGDDWFQ--------SMIDGDE------------ 216 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577 D+ E W ++ G P+I F+D N PQ + Sbjct: 217 -----------DKRET-----------WANIVETRINIGVPYIIFRDNMNGGKPQVYKDK 254 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +++SNLCTEI+L ++ E+ VC L S+N L FD K + T R LD V Sbjct: 255 NYQINASNLCTEISLPATPTESFVCCLSSMNAL------HFDEWKDTDAVETLTRFLDAV 308 Query: 636 ID-----------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 ++ + +++A + HRAIG+G++G+ S L IP+ S +A+ + Sbjct: 309 MEEFIQEAQGNEYLGVDLMQRAVRFAERHRAIGIGVLGWHSYLQSKMIPFDSMDAMRENE 368 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + I + + S +A E G +G Sbjct: 369 KIFSMIEERSYAESERMADEFGEPEVLEG------------------------------- 397 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803 G RN+ M++APT + + I G VS SI+P N +V+ T N Sbjct: 398 -----------YGRRNATTMSVAPTKSSSVILGQVSASIEPLKSNYFVRDGAKLKSTQKN 446 Query: 804 SFLVNELKQR-----DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL LK R D WD + +DGS+ +++ + D K++ T EI M +I Sbjct: 447 RFLEAILKDRGEDTRDTWDS-----IGRNDGSVQHLDCLDDHEKEVFKTFSEIPQMAIIN 501 Query: 859 SASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 A++RQ IDQ+QS+N+ + DE S K+++ +Y +AW G+K+ YY S +A Sbjct: 502 QAAQRQDHIDQSQSVNISINPDEVSVKEMNQLYIEAWRKGVKSLYYQHSVNA 553 >gi|319942969|ref|ZP_08017252.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] gi|319743511|gb|EFV95915.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] Length = 829 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 164/632 (25%), Positives = 273/632 (43%), Gaps = 94/632 (14%) Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF--MCSTPT 357 +L ++Y +G + E F RVA LA E + E R L + H + + Sbjct: 24 VLAEKYLK--DGEKTEA--ELFARVARALASVE-KPEIRDEWEAKFLGNLHAGAIGAGRI 78 Query: 358 LFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVR 408 + +GT L +CF+ V D + G I+ AL+E A + GG+G D++ +R Sbjct: 79 MSAAGTDIQATLINCFVQPVGDCIQGYDDQGYPGIYEALREAAETMRRGGGVGYDFSRIR 138 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + GT+ + G ++ V + + V G R+GA L H DV +F+ ++ Sbjct: 139 PNGAEVKGTHSIASGPCSYINVFDQSCATVESAGSRRGAQMGVLRIDHPDVLDFITAKRT 198 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 G R ++ N + + D FMK + NA W L +H +A Y+R Sbjct: 199 PG----RWNNFNVSVGVTDAFMKALQDNADWEL--------VHRARPGRKVMAAGAYQR- 245 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 D G+ V+R++ A LW ++ ++ P I F D + + + ++N C E Sbjct: 246 -DDGKW-VYRRVPARQLWDTIMKSTYDFAEPGILFLDAIGRDNNLNYCETIEATNPCGEQ 303 Query: 589 TLNSSSEETAVCNLGSI-------NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 L C+LG I N H FD+ + VR LDNV+D+ Sbjct: 304 PL----PPYGCCDLGPIILTRFVRNAFGHGGEPTFDFAAFEDVVAIQVRALDNVLDVTFW 359 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 ++K + R IG+G G + L +L + Y E +A E + A ASVEL Sbjct: 360 PLDKQRAEAAAKRRIGVGFTGLGNTLAMLKLRYDRAEGRAMAARIAETMRNAAYRASVEL 419 Query: 702 AQERGAYSSF-------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 A+E+GA+ F KGS +G F SRLP D++K ++ Sbjct: 420 AKEKGAFPQFDADRYLGKGSKKGEGSF-------------------ASRLP-DDIKADIR 459 Query: 755 TIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 G+RNS+ ++IAPT T+ A S I+P + Y + D + + ++V + Sbjct: 460 KYGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-RSEYVVEDHAW 518 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--A 870 R + G+++ +PD A + + + ++E+ Q ++D + Sbjct: 519 RLFKSQG------------GDVDNLPDYFVNALAMTAQ-EHVAMMEAV---QPYVDTSIS 562 Query: 871 QSLNLYLDEPSGKKLDFIYRQAW---LMGLKT 899 +++N+ D P D +Y+QAW L GL T Sbjct: 563 KTVNVPADYPYEDFKD-LYQQAWKARLKGLAT 593 >gi|126728437|ref|ZP_01744253.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata E-37] gi|126711402|gb|EBA10452.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata E-37] Length = 762 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 154/590 (26%), Positives = 250/590 (42%), Gaps = 85/590 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380 R+A LA E E FY L F ++ + +GT R L +CF + T+PD + Sbjct: 37 RIARALAEVEAEPAVWEDRFYAALEDFKYLPAGRITAGAGTARSVTLFNCFVMGTIPDTM 96 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + + Sbjct: 97 GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVTGVAADASGPLSFMDVWDAMCRTIMS 156 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA+ A + H D+E F+ + D R N + + D FM+ V + W Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFIGAKS----DSARLRMFNLSVLVTDTFMEAVKADGPWD 212 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L Q D V+ + A LW +++ ++ P Sbjct: 213 L--------------------------QFDG---TVYHTVQARDLWNRIMRATYDYAEPG 243 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + F D N + +V + ++N C E L C LGS+NL A + Sbjct: 244 VIFIDRINKANNLNYVETIAATNPCGEQPL----PPYGACLLGSVNLARLVAEPFTDAAR 299 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D D L + AVR++DNV+D + + + + R IGLG+ G AL ++ Y Sbjct: 300 LDEDALDELVTCAVRMMDNVVDASRFPLPQQEAEAQAKRRIGLGVTGLADALLMMGQRYG 359 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA A+ ++ I+ A ASV+LA+E+GA+ F D+ LA + Sbjct: 360 SEEAAVQAEGWLKRIARAAYLASVDLAKEKGAFPLF------------DAEKYLAS-GNM 406 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 +AM+ ++++ V+ G+RN+ +IAPT TI+ G VS I+P + Y + Sbjct: 407 MAMD-------EDVRSAVREHGIRNALVTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D T +V+ Q + G +PD A P+ Sbjct: 460 LQKDGTRTEEEVVDYAVQ-------------MYRAVHGEDAELPDYFVNAQTLA----PL 502 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 + + QKW+D + S + E S + +Y A+ G K TTY Sbjct: 503 EHVRMQAAAQKWVDSSISKTINCPEDISFEDFKEVYMAAYETGCKGCTTY 552 >gi|222109642|ref|YP_002551906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax ebreus TPSY] gi|221729086|gb|ACM31906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax ebreus TPSY] Length = 813 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 171/637 (26%), Positives = 284/637 (44%), Gaps = 89/637 (13%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353 + + +L ++YF S +E F RVA LA E E ++A+E F + L + + Sbjct: 17 ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDMRQALEARFLDNLRA-GAIG 71 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 + + +GT L +CF+ V D + G I+ AL+E A + GG+G D+ Sbjct: 72 AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L +H E+ + Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWEL--------VHGA-APGAELQAQG 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++AD G+ V+R + A LW ++ ++ P I F D N + + + ++N Sbjct: 239 AHQRAD-GQW-VYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636 C E L C+LG I +L F N FD+D + T VR LDNV+ Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+ + + + + R IG+G G + L +L Y E ++A + E + A Sbjct: 352 DVTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRREGRDMAVQIAERMRNAAYR 411 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ASVELA+E+GA+ F D+ G LA+ SRLP D ++K ++ Sbjct: 412 ASVELAKEKGAFPKF------------DADGYLAK------GTFASRLPAD-IQKAIRKH 452 Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS+ ++IAPT T+ A S I+P + Y + D + + ++V + R Sbjct: 453 GIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWSYTRRKREADGS-KSEYVVEDYAWR- 510 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872 + L G++ +P A D + ++E+ Q ++D A ++ Sbjct: 511 -----LYKTLG------GDVNHLPAYFVSAMDMA-AADHVAMMEAV---QPFVDTAISKT 555 Query: 873 LNLYLDEPSGKKLDF--IYRQAWLMGLKTTYYLRSRS 907 +N+ D P DF +Y QAW GLK R S Sbjct: 556 VNVPEDYPYA---DFKGLYMQAWHSGLKGLATYRPNS 589 >gi|332527721|ref|ZP_08403762.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rubrivivax benzoatilyticus JA2] gi|332112119|gb|EGJ12095.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rubrivivax benzoatilyticus JA2] Length = 827 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 160/606 (26%), Positives = 273/606 (45%), Gaps = 82/606 (13%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLS-SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD-- 378 RVA LA E E + A E L + F+ + + +GT L +CF+ V D Sbjct: 40 RVARALAAIEAEDARSAREAEFLWAMQRGFVPAGRIMSAAGTDIQATLINCFVQPVGDSI 99 Query: 379 -----DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D GI+ A+ E A + GG+G D++ +R GA + T+ ++ G + F++V + Sbjct: 100 TGYEGDKPGIYTAVTEAAETMRRGGGVGYDFSRIRPQGALVTQTHSRASGPVSFMRVFDA 159 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + V G R+GA L H D+E F+ + D+ + N + + D ++ V Sbjct: 160 SCETVESAGARRGAQMGVLRCDHPDIEAFIHAK-----DKGELRNFNISVGVTDALVQAV 214 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +A + L +H E +A +R+ + V+R + A LW +++ Sbjct: 215 IDDAEFEL--------VHAARPHEELVAAGARQREDGK---WVYRSVKARDLWDQIMRST 263 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--- 610 ++ P + F D N + + + ++N C E L + C LGS++L H Sbjct: 264 YDHAEPGVLFIDQMNRENNLHYCETIEATNPCAEEPL----PDYGCCCLGSVDLTRHVVG 319 Query: 611 -FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 F+++ FD++ A+ +R VR+LDNV+D +E+ + R +GLG +G S+L Sbjct: 320 AFSDDAHFDFEGFAAVVRVGVRMLDNVLDATYWPLEQQRAEAAAKRRVGLGFLGLGSSLV 379 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L I Y S E +A + E + + ASV+LA ERGA+ + + + + F Sbjct: 380 MLGIRYDSDEGRALAAKIAETMRDASYLASVDLAVERGAFPKLEKTKYLKSGF------- 432 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786 RLP + ++K ++ G+RNS+ +AIAPT TI A S I+P + Sbjct: 433 ------------AKRLP-ESIRKAIRKHGIRNSHLLAIAPTGTISLAFADNASNGIEPPF 479 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 Y + D S + E+ R W L H G G++ ++P Sbjct: 480 SWTYNRKKREAD----GSHRIFEVADR-AW------RLFRHLG--GDVTKLPPQF----V 522 Query: 847 TAFEI---DPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 TA E+ D M ++E+ Q ++D ++++N+ D P + +Y AW GLK Sbjct: 523 TALEMSANDHMRMLEAV---QPFLDTSISKTVNVPADYPY-EDFQNLYLDAWKAGLKGLA 578 Query: 902 YLRSRS 907 R S Sbjct: 579 TYRPNS 584 >gi|162448129|ref|YP_001621261.1| ribonucleoside-diphosphate reductase subunit alpha [Acholeplasma laidlawii PG-8A] gi|161986236|gb|ABX81885.1| ribonucleoside-diphosphate reductase, alpha chain [Acholeplasma laidlawii PG-8A] Length = 700 Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 297/649 (45%), Gaps = 70/649 (10%) Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 D+ Y F F Y+G Y+ Y L + + + + R+A+ +A Sbjct: 84 DIAYAAKFRFPTYMGAFKFYNDYALKDRTGKNYL-ERYEDRLAVNALYHANGDFDKARNL 142 Query: 343 YNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 LL S F +TPTL N+G ++ + SCFL D L I + + L+K GG+ Sbjct: 143 IRLLISQDFTPATPTLLNTGKSKRGEFVSCFLLEAGDSLNDISRISEFSMQLSKVGGGVS 202 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + T +R G I G S+GV+ +K+ ++ +Q G+R GA YL +H D+E+ Sbjct: 203 INLTNLRAKGEAIKGIPNVSKGVVGVVKLLDNNFRYADQMGQRTGAGAVYLNVFHADIED 262 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EI 520 FL +K DD R ++ IPD FM+ N LF P V + YGK+F +I Sbjct: 263 FLATKKLNADDDIRAKTLSMGVVIPDKFMELARDNKDMWLFYPHTV---FEQYGKDFADI 319 Query: 521 AYEN---YERQADRGEIKVFRKISAVALWRKMLTMLF----ETGHPWITFKDPCNIRSPQ 573 + + Y+ AD ++ RK++ RK+L M+ E+G+P+I F D N +P Sbjct: 320 SIDMDHWYDILADNPLVRK-RKVNP----RKILDMIAQLQGESGYPYIMFSDNVNKANPL 374 Query: 574 QHVGVVHSSNLCTEI---TLNSSSEETAVCN--LG---SINLLAHFANNQFDYDKLASTI 625 V SNLCTEI T+ S + N +G S NL + N ++ + T+ Sbjct: 375 DM--PVKFSNLCTEILQPTITSHYGDYGANNDEIGMDISCNLASGHMGNMMKHNTIKETV 432 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A+ V+++V + + + K+N +R++G G+MG + +I Y S E +++ D Sbjct: 433 FGAMDVMNSVSNQTDIKHVPAVAKANRLNRSVGFGIMGHHGYIAENYIMYGSDENIDLID 492 Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTS 742 ++++++ S+E A+E G + F+ S + G + D G + D++ + + Sbjct: 493 VFFNIVNYYSLVHSMEKAKETGEKFHRFEKSKYADGSY-FDGRGQILPKTDKVKELFKNV 551 Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +P W +LK+ V T G+ NS+ +A+AP +I + + S+ P Sbjct: 552 YIPTDDDWLQLKEDVMTHGLYNSHRLAVAPNGSIGYVMSATPSLTP-------------- 597 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +KQ ++ + Y + + ++ TA+ +D LI+ Sbjct: 598 -----------IKQ-------LVEERTYGNSKTYYPMPAVEKAAFMYETAYRMDTYRLID 639 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + QK +DQ S L + + + ++L Y A G+KT YY R++ Sbjct: 640 VIATAQKHVDQGISFELCITSDITTRELQKYYLYAHYQGIKTLYYTRTQ 688 >gi|89900981|ref|YP_523452.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] gi|89345718|gb|ABD69921.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] Length = 969 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 146/494 (29%), Positives = 226/494 (45%), Gaps = 58/494 (11%) Query: 323 RVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379 RVA LA E ++++ E F L + F+ + +GT L +CF+ V D Sbjct: 43 RVAHALAQVEAPEQQKQWETKFLQALQN-GFLPAGRIQSAAGTDLAATLINCFVQPVGDS 101 Query: 380 LY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + GI+ AL E A + GG+G D++ +R GA + T + G + +++V + Sbjct: 102 IAHVEDGHPGIYTALTEAAETMRRGGGVGYDFSRIRPRGAWVGSTQSSASGPVSYMRVFD 161 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA L H D+EEF+ K+TGD + + N + I D FM+ Sbjct: 162 RSCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDTGDLK----NFNISVGITDTFMQA 216 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++A + L E G D G I V+R + A LW +++ Sbjct: 217 VQKDAAFALVHRAEPGPAQKEAGAH---------HVTDSG-IWVYRTLQARELWDQIMRS 266 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++ P + F D N + + + S+N C E L C LGSI+L F Sbjct: 267 TYDHAEPGVLFLDHINRDNNLSYCETIASTNPCAEQPL----PPYGCCCLGSIDL-TRFI 321 Query: 613 NNQFD----YDKLA--STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 F+ +DK A R A R+LDNV+D+ + + ++ + R IGLG G A Sbjct: 322 KQPFEKAASFDKAAFVEVARVATRMLDNVLDVTVWPLPQQQEEARSKRRIGLGYTGLGDA 381 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L +L++ Y + A ++A + E + A ASV+LAQERGA+ F L+ G Sbjct: 382 LVMLNLRYDTQAARDMARDISELMRDTAYDASVDLAQERGAFPLFNADLYLTG------- 434 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDP 784 SRLP LK+RV+T G+RNS+ ++IAPT TI A S I+P Sbjct: 435 -----------QRFASRLP-PALKERVRTHGLRNSHLLSIAPTGTISLAFADNASNGIEP 482 Query: 785 SYQNLYVKSNMSGD 798 ++ Y + D Sbjct: 483 AFSWSYTRKKRMAD 496 >gi|194290033|ref|YP_002005940.1| ribonucleotide reductase subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193223868|emb|CAQ69877.1| Putative ribonucleotide reductase alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 828 Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 169/647 (26%), Positives = 285/647 (44%), Gaps = 86/647 (13%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 AND A + + ++L ++Y S ++ Q RVA LA E E ++ A Sbjct: 3 ANDQIIRGALAPQEISTEVLLEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWS 58 Query: 342 FYNLLSSFH-FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAM 392 L + + F+ + +GT L +CF+ V D + I+ A+ + A Sbjct: 59 ARFLWAQENGFVPAGRINSAAGTGIQATLINCFVQPVGDSVSEPRDGRPSIYTAVAQAAE 118 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 + GG+G D++ +R GA + T+ ++ G + F+KV + + V G R+GA L Sbjct: 119 TMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVL 178 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+E F+ + D+ + N + + D FM+ V +A EV +H+ Sbjct: 179 RCDHPDIESFIHAK-----DKGELSNFNISIGVTDDFMQAVQADA--------EVELVHE 225 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 IA Y R D G+ V+R++ A LW +++ ++ P I F N + Sbjct: 226 AEPGADMIAAGAYRR--DDGQW-VYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNN 282 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRT 627 + + ++N C E L S C LGSINL FD+D A +R Sbjct: 283 LYYCERIEATNPCAEQPLPS----YGCCCLGSINLTRFVRQPFTPQAAFDFDAFAEVVRV 338 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A R+LDNV+D+ + + + H R +GLG +G SAL +L + Y + A ++A Sbjct: 339 ATRMLDNVLDVTFWPLPEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARIS 398 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E + A AS ELA ++GA+ F + + F SRLP Sbjct: 399 ERMRDEAYLASTELATQKGAFPLFDAEAYLRSGF-------------------ASRLP-Q 438 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 +++ + G+RNS+ ++IAPT TI A S I+P++ Y + D Sbjct: 439 TVREAIGRHGLRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRRKRMPD------- 491 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESASR 862 N + ++ D A L H G+ ++ ++P+ TA + +D M ++E+ Sbjct: 492 --NSYRSFEVADHAW--RLYRHMGA--DMAQLPEAF----VTALQMSALDHMRMLEAV-- 539 Query: 863 RQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 Q +ID ++++N+ D P + +Y +AW GLK R S Sbjct: 540 -QPYIDTSISKTVNVPEDYPY-EAFRNLYLEAWKAGLKGLATYRPNS 584 >gi|73541801|ref|YP_296321.1| ribonucleotide reductase large subunit [Ralstonia eutropha JMP134] gi|72119214|gb|AAZ61477.1| Ribonucleotide reductase large subunit [Ralstonia eutropha JMP134] Length = 828 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 174/674 (25%), Positives = 296/674 (43%), Gaps = 91/674 (13%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--- 338 AND A + + ++L ++Y S ++ + RVA LA ETE ++ Sbjct: 3 ANDQILRGALAPQEISTEVLLEKYAKGEEQSVTDVRK----RVARALAQAETEDQREGWT 58 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-------GIFGALQENA 391 A + S F + +G + L +CF+ V D + I+ A+ + A Sbjct: 59 ARFLWAQESGFVPAGRINSAAGTGIQA-TLINCFVQPVGDSVSEPRGGRPSIYTAVAQAA 117 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 + GG+G D++ +R GA + T+ ++ G + F+KV + + V G R+GA Sbjct: 118 ETMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGV 177 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+E F+ K+ GD + N + + D FM+ V ++ +EV +H Sbjct: 178 LRCDHPDIESFIHA-KDKGD----LSNFNISIGVTDEFMRAVERD--------EEVELVH 224 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + IA Y R D G+ V+R++ A LW +++ ++ P I F N + Sbjct: 225 EAEPGADLIAGGAYRR--DDGQW-VYRRMPARLLWDQVMHATYDHAEPGILFLSRINADN 281 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIR 626 + + ++N C E L C LGSI+L ++ FD+D A +R Sbjct: 282 NLYYCETIEATNPCAEQPL----PPYGCCCLGSIDLTRFVRQPFTPDSDFDFDAFAEVVR 337 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + R+LDNV+D+ + + + R +GLG +G SAL +L + Y S A +A Sbjct: 338 VSTRMLDNVLDVTFWPLPEQQAEAQAKRRVGLGFLGLGSALVMLGLRYDSEPARVVAARI 397 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E + A AS ELA E+GA+ F + Q F SRLP Sbjct: 398 AERMRDEAYLASTELAAEKGAFPLFDADAYLQSGF-------------------ASRLP- 437 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 + +++ + G+RNS+ ++IAPT TI A S I+P++ Y + D Sbjct: 438 EPVRQAIMRNGLRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYQRKKRMPD------ 491 Query: 805 FLVNELKQRDLWDEAMISDLKY-HDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESA 860 N + ++ D A +Y H G+ ++ ++PD TA + +D M ++++ Sbjct: 492 ---NTYRTYEVADHAW---RRYRHTGA--DMNKLPDAF----VTALQMSALDHMRMLQAV 539 Query: 861 SRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLK 917 Q +ID ++++N+ D P + +Y +AW GLK R S +V ++ Sbjct: 540 ---QPYIDTSISKTVNVPEDYPY-EAFRNLYLEAWKAGLKGLATYRPNSVLGAVLSVSVP 595 Query: 918 GVDGKLNAVPVTDP 931 V A V DP Sbjct: 596 AVAASSTATTVDDP 609 >gi|322384851|ref|ZP_08058512.1| ribonucleotide reductase large subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150320|gb|EFX43822.1| ribonucleotide reductase large subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 891 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 33/433 (7%) Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D GI L E + GG+G + + +R A + G NG S G + Sbjct: 164 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 223 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + W+ D+ +F+ +++ G + + N + I Sbjct: 224 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 279 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD +D Y ++++ + + +A E+K +R + A +W Sbjct: 280 NSFMKAVKEDLDWELVFPD-TTDPE--YNEKWDGNLDAW--KALGKEVKHYRTVRARDVW 334 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L + VCNL ++N Sbjct: 335 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 390 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + N+ D+++L +R +VR LDNVID + E+ +K+ R IG+G MG Sbjct: 391 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 450 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L I Y SPE++E D+ F++ A AS E+A E+G++ F + Q F + Sbjct: 451 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 510 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + EV + ++ N GMRN + APT + + G S I+P Sbjct: 511 MVAEFPEVGESISQN-----------------GMRNVTVITQAPTGSTGTMVGTSTGIEP 553 Query: 785 SYQNLYVKSNMSG 797 + Y + + G Sbjct: 554 YFAFEYFRQSRLG 566 >gi|167578702|ref|ZP_02371576.1| ribonucleotide reductase system [Burkholderia thailandensis TXDOH] Length = 843 Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 159/608 (26%), Positives = 270/608 (44%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G + R+ D + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+D LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G AL +L + Y + E + A + A ASVELA ERGA+ F S Sbjct: 372 IGIGFTGLGDALVMLGLRYDAQEGRDFAARVARVMRDAAYRASVELACERGAFPLFDASR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D++++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLP-DDIQEAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 +++ +P +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 519 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|167463293|ref|ZP_02328382.1| Ribonucleotide reductase alpha subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 868 Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 33/433 (7%) Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D GI L E + GG+G + + +R A + G NG S G + Sbjct: 141 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 200 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + W+ D+ +F+ +++ G + + N + I Sbjct: 201 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 256 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD +D Y ++++ + + +A E+K +R + A +W Sbjct: 257 NSFMKAVKEDLDWELVFPD-TTDPE--YNEKWDGNLDAW--KALGKEVKHYRTVRARDVW 311 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L + VCNL ++N Sbjct: 312 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 367 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + N+ D+++L +R +VR LDNVID + E+ +K+ R IG+G MG Sbjct: 368 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 427 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L I Y SPE++E D+ F++ A AS E+A E+G++ F + Q F + Sbjct: 428 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 487 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + EV + ++ N GMRN + APT + + G S I+P Sbjct: 488 MVAEFPEVGESISQN-----------------GMRNVTVITQAPTGSTGTMVGTSTGIEP 530 Query: 785 SYQNLYVKSNMSG 797 + Y + + G Sbjct: 531 YFAFEYFRQSRLG 543 >gi|30348566|emb|CAC84358.1| RRlarge [Saimiriine herpesvirus 2] Length = 767 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 175/665 (26%), Positives = 280/665 (42%), Gaps = 96/665 (14%) Query: 301 LYDRYFL----HINGSRIEMPQAFFMRVA--------MGLALKET----EKEKRAVE--- 341 YD Y L NG +P FF R+A M +LK+T +K VE Sbjct: 97 FYDTYVLPPKTENNGKYESIPH-FFARIAAYCAWNCIMCESLKDTLVYIQKRDWNVEIKT 155 Query: 342 -------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQE 389 FY ++SS C+TP + ++G LSSCF L T + IFG L Sbjct: 156 DMHIFKYFYKVISSQLVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKSTISSIFGEL-- 213 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A L G+G D T G +IH LK+ N N R +V Sbjct: 214 -APLLASRSGVGVDVTKFSFSGKNIHSC----------LKLINAQVEFFNDKSVRPVSVA 262 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSPDEV 507 AY+E WH + EFL + D R + + +P LF K V N W LF P + Sbjct: 263 AYIEVWHCQIHEFLSAKLPENPD--RCNSIFQGVCVPSLFFKMYEVDPNGLWYLFDPKDA 320 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +L LYG EFE E Y R + K + ++ +L ++ + +TG P++ K+ Sbjct: 321 PNLVKLYGFEFE---EEYLRLVSEKKYK--QSVTLKSLMFSLINTIIKTGSPYVISKEAM 375 Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--------LAHFANN--QF 616 N + G ++ SNLC EI + + T+ CNL ++ L + +N QF Sbjct: 376 NKHHWYETQGEAINCSNLCAEI-VQQPKQFTSTCNLANVCLPKCLNSSNFPYTCSNTAQF 434 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHI 672 D+ KL ++ AV +++ I + + S+ T R++G+G G + Sbjct: 435 DFSKLEYAVQAAVFIINACI------LSPSPTSSATVGQRERSMGIGCHGLADVFSEMGY 488 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y E+ + + E + + A+ S E+ + ++ F+ S GVF + + Sbjct: 489 GYLDLESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMP 548 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + R W L+ +K G+ NS +A+ PTA + + G + S P + N+ Sbjct: 549 Q--------RVPMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMS 600 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K + + N + +K +DL ++++ G + + K TAF+ Sbjct: 601 SKVSNKEEIMKPNITFLKNVKPQDL------CTVRFYGGDVSMMPEEVSTRYKHFLTAFD 654 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT-YYLRSR 906 P + AS R ++DQ+QSL L+L E S K L + + +GLKT YY R + Sbjct: 655 YCPEAQMRRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVK 714 Query: 907 SATSV 911 T + Sbjct: 715 KTTKL 719 >gi|237651588|ref|YP_002899058.1| putative ribonucleoside-diphosphate redutase [Roseophage DSS3P2] gi|220898058|gb|ACL81316.1| putative ribonucleoside-diphosphate redutase [Silicibacter phage DSS3phi2] Length = 776 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 161/611 (26%), Positives = 257/611 (42%), Gaps = 79/611 (12%) Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENA 391 E+E FYN L F F+ + +GT R+ L +C+ + T+PD L GIF L+E A Sbjct: 57 EREALEARFYNALYDFKFLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAA 116 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 + + GG+G D++ +R GA + G S G + F+ V + + G R+GA+ A Sbjct: 117 LTMQQGGGIGYDFSTLRPKGALVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMAT 176 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 + H D+ EF+ ++ D R + N + D FM+ V ++ W L Sbjct: 177 MRCDHPDIMEFVTAKQ----DPLRLRNFNVSVLCTDEFMEAVAADSDWDLMF-------- 224 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + KV++ I A LW +L + P + F D N + Sbjct: 225 ---------------------DGKVYQTIKAKELWETILWNTYNYAEPGVIFIDRINKEN 263 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ--FDYDKLASTI 625 + + ++N C E L C LGS+NL H F Q D L ++ Sbjct: 264 NLWFLETIAATNPCGEQPL----PPYGACLLGSVNLAKHVVFPFVKGQAEIDMKALEESV 319 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 RT VR+LD+V++ + +E + R GLG+ G AL + Y + +AV D Sbjct: 320 RTGVRILDSVVETSLFPLEAQRDEARFKRRQGLGVTGLADALFMTGHRYGNQQAVNFTDT 379 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 M I+ A S+++A+E G P + L + R+P Sbjct: 380 IMMNIAIWAYEESIQMAKEMG---------------PAPCLVPLEAREKFIQSGFMQRMP 424 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804 + +K + G+RNS+ +++APT TI+ G VS +P + Y + + D T Sbjct: 425 -EYIKDDILEWGIRNSHLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT---- 479 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + ++D A++ + H G N E I + ATA ++ P I + Q Sbjct: 480 -----KRTETVYDYAVLK-FEEHFGENDNPEAIW-WWENYMATAQDLTPSDHIVMQAVLQ 532 Query: 865 KWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGV 919 KW+D + S + L E S +Y A+ G K R T SVE K V Sbjct: 533 KWVDSSISKTVNLPEDISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLSVETKEEKPV 592 Query: 920 DGKLNAVPVTD 930 + K+ A P D Sbjct: 593 ETKV-AEPAYD 602 >gi|330823092|ref|YP_004386395.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans K601] gi|329308464|gb|AEB82879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans K601] Length = 811 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 163/636 (25%), Positives = 279/636 (43%), Gaps = 87/636 (13%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353 + + +L ++YF S +E F RVA LA E E + A++ F + L + Sbjct: 17 ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDIREAMQARFLDNLRAGAIGA 72 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 + +GT L +CF+ V D + G I+ AL+E A + GG+G D+ Sbjct: 73 GR-IMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L +H E+ E Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWEL--------VHSA-APGAELLKEG 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++AD G+ ++R + A LW ++ ++ P I F D N + + + ++N Sbjct: 239 ARQRAD-GQW-IYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636 C E L C+LG I +L F N FD+D + T VR LDNV+ Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+ + + + R IG+G G + L +L Y + ++A + E + A Sbjct: 352 DVTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYR 411 Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+E+GA+ F+ + +G F SRLP ++++K+++ Sbjct: 412 ASVELAKEKGAFPKFQADGYLAKGTF-------------------ASRLP-EDIQKQIRK 451 Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T+ A S I+P + Y + D + + ++V + R Sbjct: 452 HGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYAWR 510 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--Q 871 + G++ ++P A D + ++E+ Q ++D A + Sbjct: 511 ------------LYKTLGGDVNQLPAYFVSAMDMA-AADHVAMMEAV---QPYVDTAISK 554 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 ++N+ D P +Y QAW GLK R S Sbjct: 555 TVNVPEDYPY-DDFKGLYMQAWHSGLKGLATYRPNS 589 >gi|9631251|ref|NP_048032.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3] gi|4019287|gb|AAC95585.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3] Length = 767 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 167/637 (26%), Positives = 271/637 (42%), Gaps = 90/637 (14%) Query: 301 LYDRYFLHI----NGSRIEMPQAFFMRVA--------MGLALKET----EKEKRAVE--- 341 YD Y L NG +P FF R+A M LK+T +K VE Sbjct: 97 FYDTYVLPPKPGSNGRYESIPH-FFARIAAYCAWNCIMCEPLKDTLVHIQKRDWNVELKT 155 Query: 342 -------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQE 389 FY ++SS C+TP + ++G LSSCF L T + IFG L Sbjct: 156 NIQIFKYFYKVISSQLVCCATPVMRSAGIAGENLSSCFIVAPTLDTEKSTISSIFGEL-- 213 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A L G+G D T G +IH LK+ N N R +V Sbjct: 214 -APLLASRSGVGIDVTKFSFGGKNIHSC----------LKLINAQVDFFNDKSVRPVSVA 262 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSPDEV 507 Y+E WH + EFL + D R + + IP LF K NA W LF P + Sbjct: 263 TYIEMWHCQIHEFLSAKLPENPD--RCNSIFQGVCIPSLFFKMYETDPNAQWYLFDPQDA 320 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +L LYG EF+ E Y R + K + +S +L ++ + +TG P++ K+ Sbjct: 321 PNLTKLYGSEFD---EEYLRLVSTKKYK--QSVSLKSLMFSLINTIIKTGSPYVISKEAM 375 Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--------LAHFANN--QF 616 N + G ++ SNLC EI + + T+ CNL +I L + +N QF Sbjct: 376 NKHHWYETQGEAINCSNLCAEI-VQQPKQYTSTCNLANICLPKCLNGSEFPYTCSNKAQF 434 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL ++ AV +++ I T A R++G+G G + Y Sbjct: 435 DFLKLEYAVQAAVFIINACILAPSPT--SAATVGQRERSMGIGCQGLADVFSEMGYGYLD 492 Query: 677 PEAVEIADESMEFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 E+ + + E + + A+ S E+ + ++ F+ S G+F + + + Sbjct: 493 LESECLDRDIFETMYYTAVKTSSEICSIGKGQPFAGFRKSKLAHGIFHWATWDAMPQ--- 549 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++ M + W L+ +K G+ NS +A+ PTA + + G + S P + N+ K + Sbjct: 550 KVPMKQ-----WIHLQDNIKKFGVYNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVS 604 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK---KIHATAFEI 851 + N + +K +DL ++++ G++ +P++L K TAF+ Sbjct: 605 NKEEIMRPNLTFLKNVKPQDL------CTVRFYG---GDVSMMPEELSARYKHFLTAFDY 655 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 P + AS R ++DQ+QSL L+L E + + +I Sbjct: 656 CPKAQMRRASVRAPYVDQSQSLTLFLTEDNIQSAKYI 692 >gi|329922843|ref|ZP_08278359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. HGF5] gi|328941616|gb|EGG37901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. HGF5] Length = 718 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/404 (28%), Positives = 198/404 (49%), Gaps = 34/404 (8%) Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+G + + +R A + G NG S G + + + + T + QGG R+GA+ + WH Sbjct: 8 GGGVGINLSSLRPRRAIVRGVNGSSSGAVSWGGLFSYTTGLIEQGGSRRGALMLMMNDWH 67 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-DLHDLYG 515 DVE+F+ +++ G + + N + + + FMK V ++ W L PD D +L+ Sbjct: 68 PDVEDFITVKQTMG----QVTNANLSVCVSNDFMKAVKEDLDWELVFPDTTDPDYDELWD 123 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 + + ++A R I ++ + A +W ++ +++ P + F + N S + Sbjct: 124 GDLD-----KWKKAGR-SIIPYKTVKAREVWHTIIESAWKSAEPGVVFMEYYNQMSNSWY 177 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLD 633 + +N C E L VCNL ++NL + AN+ +D+LA+T R +VR LD Sbjct: 178 FNPIICTNPCGEQGLPG----WGVCNLSAMNLSKFYDEANHDVAWDELATTTRYSVRFLD 233 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NVID + E+ + + R +GLG MG + L+I Y SPE++E D+ FI+ Sbjct: 234 NVIDRTPYHFEENELNQKKERRVGLGTMGLAELMIKLNIRYGSPESLEFLDKLYGFIARE 293 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A AS ++A+E+G++ +F L+ Q F + +AEV E+A + V Sbjct: 294 AYLASADIAEEKGSFQAFDAELFLQSGF----MKNMAEVYPEVA-------------EAV 336 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + G RN + APT + + G S I+P + Y + + G Sbjct: 337 RKKGARNVTVITQAPTGSTGTMVGTSTGIEPYFAFKYFRQSRLG 380 >gi|167572268|ref|ZP_02365142.1| ribonucleotide reductase system [Burkholderia oklahomensis C6786] Length = 825 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 266/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 17 IYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 71 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 72 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 131 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 132 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 187 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 I D FM V Q+ W L E S G + R+ D + V+ + A A Sbjct: 188 ITDAFMDAVEQDLPWQLVHRAEPSPARRAAG--------DLHRRDD--GMWVYAEKRARA 237 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W ++ ++ P + F N + + V + ++N C E L + CNLG Sbjct: 238 IWDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPA----YGCCNLGP 293 Query: 605 INL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA Q FD+D LA RT VR LD+V+D+ + + + R Sbjct: 294 LNLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRR 353 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S E + A + A ASVELA+ERGA+ F Sbjct: 354 IGIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADR 413 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + + G F SRLP D+++ ++ G+RNS+ ++IAPT T+ Sbjct: 414 YLEAGTF-------------------ASRLP-DDIQDAIRRDGIRNSHLLSIAPTGTVSL 453 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D +F V + R L+ E G Sbjct: 454 AFADNASNGIEPAFSWTYQRTKIMADGG-RRTFAVEDYAYR-LYRELG-----------G 500 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 +++ +PD +A ++ + + Q ++D ++++N+ D P + +Y Sbjct: 501 DVDALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPF-DDFESLYF 555 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 556 DAWKSGLK 563 >gi|167565165|ref|ZP_02358081.1| ribonucleotide reductase system [Burkholderia oklahomensis EO147] Length = 843 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 160/608 (26%), Positives = 266/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 I D FM V Q+ W L E S G + R+ D + V+ + A A Sbjct: 206 ITDAFMDAVEQDLPWQLVHRAEPSPARRAAG--------DLHRRDD--GMWVYAEKRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W ++ ++ P + F N + + V + ++N C E L + CNLG Sbjct: 256 IWDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA Q FD+D LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S E + A + A ASVELA+ERGA+ F Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + + G F SRLP D+++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEAGTF-------------------ASRLP-DDIQDAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D +F V + R L+ E G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGG-RRTFAVEDYAYR-LYRELG-----------G 518 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 +++ +PD +A ++ + + Q ++D ++++N+ D P + +Y Sbjct: 519 DVDALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|160896563|ref|YP_001562145.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Delftia acidovorans SPH-1] gi|160362147|gb|ABX33760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Delftia acidovorans SPH-1] Length = 840 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 154/606 (25%), Positives = 263/606 (43%), Gaps = 89/606 (14%) Query: 320 FFMRVAMGLALKETEKEKRAVE---FYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA LA E E + E NL + + M + T + L +CF Sbjct: 64 LYARVARALASVEPEARRAECEALFLANLQAGAIGAGRIMSAAGTDLQA-----TLINCF 118 Query: 373 LTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D + G I+ AL+E A + GG+G D++ +R GA + T + G Sbjct: 119 VQPVGDCIQGVDDGGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAEVRATASLASGP 178 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA L H DV EF+ ++ G R ++ N + Sbjct: 179 CSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLEFITAKRTPG----RWNNFNVSVG 234 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM+ V ++ W L +H + E Q G+ V++ + A Sbjct: 235 VSDAFMQAVAEDQPWHL--------VH--RARPGTALLEQGAHQRADGQW-VYQTLPART 283 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LW ++ ++ P I F D N + ++ + ++N C E L S C+LG Sbjct: 284 LWDTIMRSAYDFAEPGILFLDHINDDNNLRYCEEIAATNPCGEQPLPS----YGCCDLGP 339 Query: 605 INLLAHFANNQF--------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 + +L F + F D++ + VR LDNV+++ + + ++ + R I Sbjct: 340 V-ILTRFVRHPFGFAGEPVFDFEAFERAVAVQVRALDNVLELTWWPLPQQREESEAKRRI 398 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G +AL +L + Y +PE +A E + A ASVELA+E+GA+ F Sbjct: 399 GVGFTGMGNALAMLRLRYDAPEGRAMAARIAERMRDAAYGASVELAREKGAFPKF----- 453 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--AN 774 D+ G LAE SRLP + L++R++T G+RNS+ ++IAPT T+ A Sbjct: 454 -------DADGYLAE------GTFASRLP-EALRQRIRTHGIRNSHLLSIAPTGTVSLAF 499 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 S I+P + Y + + D + + W + + G++ Sbjct: 500 ADNASNGIEPPFSWTYKRKKRTADGGSAEYAVEDH-----AW--------RLYRSLGGDV 546 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQA 892 +++P +A ++ I Q ++D A +++N+ D P + +YRQA Sbjct: 547 QQLP----AYFVSALQMPAAGHIAMMQAVQPFVDTAISKTVNVAADYPY-EDFKDLYRQA 601 Query: 893 WLMGLK 898 W GLK Sbjct: 602 WKAGLK 607 >gi|139472880|ref|YP_001129418.1| ORF61 [Human herpesvirus 8] gi|87196890|gb|ABD28916.1| ORF61 [Human herpesvirus 8] Length = 792 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 178/726 (24%), Positives = 296/726 (40%), Gaps = 102/726 (14%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETE---------- 334 YE YL LYD Y L G+ E FMRV++ +A + E Sbjct: 111 YEDTLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARD 170 Query: 335 --------KEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDL 380 E VE+ + L++ H C+TP L ++G QL+SCF + P L Sbjct: 171 LIEDAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNEPGTL 230 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 ++ + + +LA SG +G D T + + + LK+ + N Sbjct: 231 DALYHDM--SPLLASKSG-VGLDVT-----------SFSHQKNIASCLKLVDAQVHYFND 276 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-- 498 R AY+E WH + +FL+ + DR H + IP LF + ++ Sbjct: 277 NNIRPVGASAYMELWHSQICDFLNAKLPENPDR--CHSLFQGVCIPTLFFRMYEKDPSKL 334 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FE 555 W LF P +L LYG F+ YE R + +S + L M T++ + Sbjct: 335 WYLFDPATAPNLIKLYGAAFDNEYERLVRAG--------KYVSCMPLKSMMFTLIHTIIK 386 Query: 556 TGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611 TG P++ K+ N G+ ++ SNLC EI + T+VCNL +I L Sbjct: 387 TGSPYVLLKEALNEHHWTDTQGMAINCSNLCAEI-VQLPGRNTSVCNLANICLPKCLRTV 445 Query: 612 ---------ANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 AN F ++ L +R AV V++ I H ++ R++G+G+ Sbjct: 446 ESARVGTTDANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVER-GQKERSMGIGVQ 504 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L Y E+ E+ + + + A+ S L E G F G W+ F Sbjct: 505 GLADVFAELGYGYLDAESAELDKNIFQSMYYTAVETSHNLVLE-GQGVPFHG--WEVSNF 561 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++ + R WD L K + G+ NS +A+ PTA + + G ++S Sbjct: 562 AKGRFHWQTWEGEDASF--VPRHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAES 619 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 + P + N+ K + N ++ DL ++ + G + + + Sbjct: 620 VYPFFANISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRER 673 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLK 898 ++ TAF+ P L++ A R ++DQ+QS++ +L E + + + + +GLK Sbjct: 674 YRVFLTAFDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLK 733 Query: 899 T-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG--IPS-------SCTSDT 948 T YY R + +S+ + L+ + A P + P+S G +P SC +D Sbjct: 734 TLMYYCRVQKQSSL--TALQCL-----ADPGSPPHSGMKQDGAWLPGPKNPEEESCAADP 786 Query: 949 ECEVCQ 954 EC VCQ Sbjct: 787 ECLVCQ 792 >gi|1718317|gb|AAC57146.1| ORF 61 [Human herpesvirus 8 type M] gi|2246520|gb|AAB62645.1| ORF 61 [Human herpesvirus 8] gi|261853542|gb|ACY00464.1| ORF61 [Human herpesvirus 8] gi|312275209|gb|ADQ57946.1| core gene UL39 family protein [Human herpesvirus 8] Length = 792 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 180/725 (24%), Positives = 296/725 (40%), Gaps = 100/725 (13%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETE---------- 334 YE YL LYD Y L G+ E FMRV++ +A + E Sbjct: 111 YEDTLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARD 170 Query: 335 --------KEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGI 383 E VE+ + L++ H C+TP L ++G QL+SCF+ P + G Sbjct: 171 LIEDAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQ-PSMMNESGT 229 Query: 384 FGALQEN--AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 AL + +LA SG +G D T + + + LK+ + N Sbjct: 230 LDALYHDMSPLLASKSG-VGLDVT-----------SFSHQKNIASCLKLVDAQVHYFNDN 277 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--W 499 R AY+E WH + +FL+ + DR H + IP LF + ++ W Sbjct: 278 NIRPVGASAYMELWHSQICDFLNAKLPENPDR--CHSLFQGVCIPTLFFRMYEKDPSKLW 335 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FET 556 LF P +L LYG F+ YE R + +S + L M T++ +T Sbjct: 336 YLFDPATAPNLIKLYGAAFDNEYERLVRAG--------KYVSCMPLKSMMFTLIHTIIKT 387 Query: 557 GHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---- 611 G P++ K+ N G+ ++ SNLC EI + T+VCNL +I L Sbjct: 388 GSPYVLLKEALNEHHWTDTQGMAINCSNLCAEI-VQLPGRNTSVCNLANICLPKCLRTVE 446 Query: 612 --------ANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 AN F ++ L +R AV V++ I H ++ R++G+G+ G Sbjct: 447 SARVGTTDANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVER-GQKERSMGIGVQG 505 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L Y E+ E+ + + + A+ S L E G F G W+ F Sbjct: 506 LADVFAELGYGYLDAESAELDKNIFQSMYYTAVETSHNLVLE-GQGVPFHG--WEVSNFA 562 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ++ + R WD L K + G+ NS +A+ PTA + + G ++S+ Sbjct: 563 KGRFHWQTWEGEDASF--VPRHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESV 620 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + N+ K + N ++ DL ++ + G + + + Sbjct: 621 YPFFANISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRERY 674 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLKT 899 ++ TAF+ P L++ A R ++DQ+QS++ +L E + + + + +GLKT Sbjct: 675 RVFLTAFDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKT 734 Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG--IPS-------SCTSDTE 949 YY R + +S+ + L+ + A P + P+S G +P SC +D E Sbjct: 735 LMYYCRVQKQSSL--TALQCL-----ADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPE 787 Query: 950 CEVCQ 954 C VCQ Sbjct: 788 CLVCQ 792 >gi|9626017|ref|NP_040263.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2] gi|266914|sp|Q01037|RIR1_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|66407|pir||WMBEP6 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain - saimiriine herpesvirus 1 (strain 11) gi|60382|emb|CAA45684.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2] gi|330990|gb|AAA46137.1| ribonucleotide reductase large subunit [Saimiriine herpesvirus 2] Length = 767 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 174/664 (26%), Positives = 280/664 (42%), Gaps = 94/664 (14%) Query: 301 LYDRYFL----HINGSRIEMPQAFFMRVA--------MGLALKET----EKEKRAVE--- 341 YD Y L +NG +P FF R+A M LK+T +K VE Sbjct: 97 FYDTYVLPPRTEMNGKYESIPH-FFARIAAYCAWNCIMCEPLKDTLVYVQKRDWNVEIKT 155 Query: 342 -------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQE 389 FY ++SS C+TP + ++G LSSCF L T + IFG L Sbjct: 156 DMQIFKYFYKVISSQLVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKSTISSIFGEL-- 213 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A L G+G D T G +IH LK+ N N R +V Sbjct: 214 -APLLASRSGVGVDVTKFSFGGKNIHSC----------LKLINAQVEFFNDKSVRPVSVA 262 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV 507 Y+E WH + EFL + D R + + +P LF K N W LF P + Sbjct: 263 TYIEVWHCQIHEFLSAKLPENPD--RCNSIFQGVCVPSLFFKMYESDPNGLWYLFDPQDA 320 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +L LYG EFE E Y R + K + ++ +L ++ + +TG P++ K+ Sbjct: 321 PNLTRLYGLEFE---EEYLRLVSEKKYK--QSVTLKSLMFSLINTIIKTGSPYVISKEAM 375 Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--------LAHFANN--QF 616 N + G ++ SNLC EI + + T+ CNL ++ L + +N QF Sbjct: 376 NKHHWYETQGEAINCSNLCAEI-VQQPKQFTSTCNLANVCLPKCLNSSNFPYTCSNTAQF 434 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL ++ AV +++ I T + R++G+G G + Y Sbjct: 435 DFSKLEYAVQAAVFIINACILSPSPT--SSATVGQRERSMGIGCHGLADVFSEMGYGYLD 492 Query: 677 PEAVEIADESMEFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 E+ + + E + + A+ S E+ + ++ F+ S GVF + + + Sbjct: 493 LESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMPQ--- 549 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 R W L+ +K G+ NS +A+ PTA + + G + S P + N+ K + Sbjct: 550 -----RVPMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVS 604 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK---KIHATAFEI 851 + N + +K +DL ++++ G++ +P+D+ K TAF+ Sbjct: 605 NKEEIMKPNITFLKNVKPQDL------CTVRFYG---GDVSMMPEDVSTRYKHFLTAFDY 655 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT-YYLRSRS 907 P + AS R ++DQ+QSL L+L E S K L + + +GLKT YY R + Sbjct: 656 CPEAQMRRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVKK 715 Query: 908 ATSV 911 T + Sbjct: 716 TTKL 719 >gi|297618137|ref|YP_003703296.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Syntrophothermus lipocalidus DSM 12680] gi|297145974|gb|ADI02731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Syntrophothermus lipocalidus DSM 12680] Length = 571 Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 149/589 (25%), Positives = 252/589 (42%), Gaps = 85/589 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT--RHPQLSSCFLTTVPDDL 380 R+A +A E E + F ++ F+ STP N G R Q ++CF+ + D L Sbjct: 33 RLARTVATAEKEPSQWEERFARIIGELFFVPSTPIWANVGKPDRPWQPAACFVLPLEDSL 92 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 +F L++ A++ K GG+G +++ +R G + + G++ GV+ L++ + A + Q Sbjct: 93 ESVFETLKDTALVFKSGGGVGYNFSAIRPRGFPVRSSQGQAFGVVELLRLYDHAAGIIVQ 152 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R+GA L H ++ EF+ + G + N + + D FM+ V +N W Sbjct: 153 GGVRRGACMGILNADHPEILEFIRAKLAGG-----LANFNLSVGVGDAFMEAVRENGTWR 207 Query: 501 L-FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 L F+ +++L A +W ++ G P Sbjct: 208 LVFNGQAIAEL------------------------------PAAEVWEAIVEASHACGEP 237 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDY 618 + F D +P + V+ ++N C E+ L + C LGSINL A Sbjct: 238 GLVFLDALQRSNPIRGT-VIAATNPCGEVPLLAGES----CILGSINLAPMVDAAGNLKE 292 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +LA T+ AVR LDN+ID+ + + ++ R IG+G G AL + Y S E Sbjct: 293 VQLAETVGIAVRFLDNLIDVGQYPLTFIAQTTRATRRIGVGFTGLADALIKSGLAYDSEE 352 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 AD + I A AS ELA+E+GA+ + S++ +P D Sbjct: 353 GRAWADRAAAIIKAAAEEASRELAREKGAFPWWGRSVY----YPDDP------------- 395 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS-NMS 796 RN+ +++APT ++ I I+P + Y KS + + Sbjct: 396 -------------------RRNAALLSVAPTGSVTLIAACEGYGIEPIFAVAYTKSTSAA 436 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G V + + E ++ + E + S++ GS ++ IP D+ ++ A EI P Sbjct: 437 GKIEVFSPLFLQECERHGI-PETVRSEVARR-GSCQGVDGIPADMARVFKGAREIAPEDH 494 Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + QK +D A S + L E + +D +R AW +GLK R Sbjct: 495 LLMQAAVQKHVDNAVSKTVNLPREATPADVDHTFRLAWELGLKGVTVFR 543 >gi|167647819|ref|YP_001685482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caulobacter sp. K31] gi|167350249|gb|ABZ72984.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caulobacter sp. K31] Length = 744 Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 130/483 (26%), Positives = 209/483 (43%), Gaps = 70/483 (14%) Query: 321 FMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV- 376 + RVA +A ET K ++ E + L+ F F+ + L +GT R L +CF+ V Sbjct: 33 WARVAHAIAEAETPKLRKGFQAEVMDALADFKFLPAGRILAGAGTARSVTLFNCFVMGVT 92 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PDDL GIF ++E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 93 PDDLGGIFEHVREAAVTLQQGGGVGMDFSSIRPAGARVEGVGADASGPLSFMDVWDSMCR 152 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + G+R+GA+ L H D+E F+D ++ R + N + + D FM + + Sbjct: 153 TILSAGQRRGAMMGCLRIDHPDIEAFIDAKRTA----NRFRNFNLSVLVTDPFMAALDAD 208 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W L +G + + R + A LW +++ ++ Sbjct: 209 GDWPLS-----------FGGQVQ------------------RTVRAADLWAQLMRATYDA 239 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 P + F D N + + + +SN C E L C LGS+NL A +N F Sbjct: 240 AEPGVIFIDRVNAANNLAYCEQILASNPCGEQML----PPYGACLLGSLNL-ARLVDNPF 294 Query: 617 ------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D D+L + RTAVR+LDNVIDI+ +E R +G+G+ G AL Sbjct: 295 EADAALDEDRLGALARTAVRMLDNVIDISRFPLEAQAVEARAKRRLGIGVTGLADALVFC 354 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y +AV + + I A AS LA E+ + L+D + ++ L Sbjct: 355 GARYGDDQAVALTQRWLGVIKREAYRASARLAAEKAPF-----PLYDPQILDRPNLTSLD 409 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNL 789 E E + + G+RN +IAPT T + + G VS I+P + Sbjct: 410 E----------------ETRALIAAHGLRNGCLTSIAPTGTTSLLAGNVSSGIEPVFAYA 453 Query: 790 YVK 792 Y + Sbjct: 454 YTR 456 >gi|91791299|ref|YP_552249.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] gi|91701180|gb|ABE47351.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] Length = 858 Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 160/613 (26%), Positives = 263/613 (42%), Gaps = 78/613 (12%) Query: 320 FFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 F RVA G+A E EK +R V F N++ + +G + L++CF+ Sbjct: 40 IFARVAKGIAQAEQPELREKYER-VFFDNMMRGAIGAGRIMSAAGTGIKA-TLANCFVQP 97 Query: 376 VPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 V D + G I+ AL+E A + GG+G D++ +R G+ + GT + G + Sbjct: 98 VGDAIQGVDTEGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGSVVKGTASSASGPCSY 157 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 + V + + V G R+GA ++ H D+ EF+ ++ G R ++ N + I D Sbjct: 158 IDVFDASCKTVESAGARRGAQMGVMKISHPDILEFITAKREVG----RWNNFNVSVGIVD 213 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FM V N W L E S G Y R++D + V+R++ A +W Sbjct: 214 GFMAAVEANEMWPLVHKAEPSVEQQRAGA--------YLRESD--GLWVYREVPAAEIWD 263 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 ++ ++ P I F D N+ + +V + ++N C E L C+LG I + Sbjct: 264 TVMKSCYDFAEPGIVFLDLMNLDNNLSYVETIEATNPCAEQPL----PPYGCCDLGPI-I 318 Query: 608 LAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L F + FD + + ++ R LDNV+ + +E+ +K R IG G Sbjct: 319 LPKFVSRAFTERAAFDDEGFKAAVKIQTRFLDNVLSVTHWPLEQQRKEAEAKRRIGAGFT 378 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720 G L +L I Y S E VE + + A AS++LA E+G + F + +G Sbjct: 379 GLGDMLAMLGIRYNSIEGVEFSRHVALMMRDAAYEASIDLAIEKGPFPLFDADKYLKKGT 438 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778 F SRLP LK R++ G+RNS+ ++IAPT T+ A Sbjct: 439 F-------------------ASRLP-KSLKDRIRRHGIRNSHLLSIAPTGTVSLAFADNA 478 Query: 779 SQSIDPSYQNLYVKSNMSGD----FTVVN---SFLVNELKQRDLWDEAMISDLKYHDG-- 829 S I+P + Y + GD + VV+ + + ++L + + +Y Sbjct: 479 SNGIEPPFALAYTRKKRVGDGHVNYNVVDHAFRVFLETVCAQELRAPLLEAVSRYQPAFE 538 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDF 887 G ++ D + TA E+ + + Q ID A +++N+ D P DF Sbjct: 539 VAGKTYQVKDCIPPSIVTAQEMSAAEHLAVMAAVQPLIDTAISKTVNVPEDYPYD---DF 595 Query: 888 --IYRQAWLMGLK 898 +Y QAW LK Sbjct: 596 KNLYMQAWKANLK 608 >gi|319761225|ref|YP_004125162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans BC] gi|317115786|gb|ADU98274.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans BC] Length = 811 Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 141/525 (26%), Positives = 236/525 (44%), Gaps = 67/525 (12%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353 + + +L ++YF S +E F RVA LA E E + A++ F + L + Sbjct: 17 ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDIREAMQARFLDNLRAGAIGA 72 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 + +GT L +CF+ V D + G I+ AL+E A + GG+G D+ Sbjct: 73 GR-IMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L +H E+ E Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWEL--------VHSA-APGAELLKEG 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++AD G+ ++R + A LW ++ ++ P I F D N + + + ++N Sbjct: 239 ARQRAD-GQW-IYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636 C E L C+LG I +L F N FD+D + T VR LDNV+ Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+ + + + R IG+G G + L +L Y + ++A + E + A Sbjct: 352 DVTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYR 411 Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+E+GA+ F+ + +G F SRLP ++++K+++ Sbjct: 412 ASVELAKEKGAFPKFQADGYLAKGTF-------------------ASRLP-EDIQKQIRK 451 Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGD 798 G+RNS+ ++IAPT T+ A S I+P + Y + D Sbjct: 452 HGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREAD 496 >gi|294338964|emb|CAZ87308.1| Putative Ribonucleoside-diphosphate reductase large chain [Thiomonas sp. 3As] Length = 811 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 159/594 (26%), Positives = 268/594 (45%), Gaps = 78/594 (13%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLT----TVP 377 RVA LA++E + + F L+ F+ + + +GT L +CF+ +V Sbjct: 29 RVARALAVEEADPARSEALFRQALAD-GFVPAGRIMSAAGTDIQATLINCFVQPVGDSVS 87 Query: 378 DDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 DD G I+ AL + A + GG+G D++ +R +GAH+ GT+ ++ G + F++V + + Sbjct: 88 DDKEGKPSIYKALAQAAETMRRGGGVGYDFSRIRPVGAHVGGTHSRASGPLSFMRVFDAS 147 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G R+GA L H D+E F+ + D+ + N + + FM+ + Sbjct: 148 CETVESAGSRRGAQMGVLRIDHPDIEAFIHAK-----DQGAFKNFNLSVGVSAAFMQAIE 202 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +A ++ +H + ++A E ++AD GE V+R + A ALW +++ + Sbjct: 203 NDA--------QIDLVHKARPGDDQLA-EGAHQRAD-GEW-VYRSVRARALWDQIMQSTY 251 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 + P I F D N + + ++N C E L + C LGSINL F + Sbjct: 252 DHAEPGILFLDTANADNNLYYCETFEATNPCAEEFL----PDYGCCCLGSINL-TRFVRD 306 Query: 615 ------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +FD + + R AVR+LDNV+D+ + + R IGLG +G A Sbjct: 307 PFTPKARFDAEGFQAVTRVAVRMLDNVLDVTYWPLVEQHNEAQNKRRIGLGFLGLGDACV 366 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y S +A A + + A +ASV+LA+E+GA+ F + + F Sbjct: 367 MLGLRYDSDDARRFAADLARTLRDAAYAASVDLAKEKGAFPLFDATKYLDSGF------- 419 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786 RLP + L+ + G+RNS+ +A+APT TI A S I+P++ Sbjct: 420 ------------AKRLP-EALRADIAAHGIRNSHLLAVAPTGTISLAFADNASNGIEPAF 466 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 +Y + D N ++ ++ D A Y S+G R L Sbjct: 467 SWVYTRKKRMAD---------NTTREYEVADHAW---RLYR--SMG---RDMSALPPAFV 509 Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 TA E+ ++ Q +ID ++++N+ D P D +Y QAW GLK Sbjct: 510 TALEMSATDHMKMLQVVQPFIDTSISKTVNVPADYPYDDFKD-LYLQAWKAGLK 562 >gi|154252043|ref|YP_001412867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Parvibaculum lavamentivorans DS-1] gi|154155993|gb|ABS63210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Parvibaculum lavamentivorans DS-1] Length = 771 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 127/471 (26%), Positives = 210/471 (44%), Gaps = 67/471 (14%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKY 396 A F+ ++ + F+ + L +GT R L +CF + +PD + GIF L+E A+ + Sbjct: 51 AKRFHEAMAGYRFLPAGRILAGAGTGRDVTLFNCFVMGEIPDTMEGIFQNLKEAALTMQQ 110 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+G D++ +R GA + G + G + F+ V + + G R+GA+ A + H Sbjct: 111 GGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDH 170 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+E F++ ++ G R N + D FM V +A W L +G Sbjct: 171 PDIEAFIEAKQEPG----RLTMFNLSVLATDAFMAAVKADADWEL-----------TFGG 215 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 VF+ + A ALW +++ + P + F D N R+ + Sbjct: 216 ------------------TVFKTLKARALWDRIIAATYAYAEPGVIFIDRINARNNLYYA 257 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRV 631 +H++N C E L C LGSINL A N D +L+ + AVR Sbjct: 258 ETIHATNPCGEQPL----PPYGACLLGSINLAALVKEPFTENAHIDESELSELVHVAVRA 313 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 +DN ID++ + + + R IGLG+ G AL + Y S +V + + M+ +S Sbjct: 314 MDNTIDVSRFPLPEQRHEATAKRRIGLGVTGLADALIMCRARYGSEASVTLIRKWMKVLS 373 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELK 750 A ASV++A+E+G + F + G ++I L ++RD +A + Sbjct: 374 RAAYLASVDIAKEKGPFLLFVADAYLAG----ETISALDKDIRDAIAEH----------- 418 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800 G+RN+ +IAPT TI+ G VS I+P + Y + + D T Sbjct: 419 ------GIRNALVTSIAPTGTISLFAGNVSSGIEPVFAYGYKRKVLMPDGT 463 >gi|83717926|ref|YP_440130.1| ribonucleotide reductase system [Burkholderia thailandensis E264] gi|83651751|gb|ABC35815.1| ribonucleotide reductase system [Burkholderia thailandensis E264] Length = 881 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 269/608 (44%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 73 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 127 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 128 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 187 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 188 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 243 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G + R+ D + V+ + A A Sbjct: 244 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 293 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 294 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 349 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+D LA RT VR LD+V+D+ + + + R Sbjct: 350 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 409 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y + E + A + A ASVELA ERGA+ F S Sbjct: 410 IGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYRASVELACERGAFPLFDASR 469 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D++++ ++ G+RNS+ ++IAPT T+ Sbjct: 470 YLEEGTF-------------------ASRLP-DDIREAIRRDGIRNSHLLSIAPTGTVSL 509 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G Sbjct: 510 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 556 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 +++ +P +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 557 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 611 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 612 DAWKSGLK 619 >gi|257140761|ref|ZP_05589023.1| ribonucleotide reductase system [Burkholderia thailandensis E264] Length = 843 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 269/608 (44%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G + R+ D + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+D LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y + E + A + A ASVELA ERGA+ F S Sbjct: 372 IGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYRASVELACERGAFPLFDASR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D++++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLP-DDIREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 +++ +P +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 519 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|237651505|ref|YP_002898976.1| putative ribonucleoside-diphosphate redutase [Roseophage EE36P1] gi|220898137|gb|ACL81394.1| putative ribonucleoside-diphosphate redutase [Sulfitobacter phage EE36phi1] Length = 776 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 154/582 (26%), Positives = 251/582 (43%), Gaps = 78/582 (13%) Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQEN 390 TE++ FYN L F F+ + +GT R+ L +C+ + T+PD L GIF L+E Sbjct: 56 TERDALEARFYNALYDFKFLRAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEA 115 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A+ + GG+G D++ +R GA + G S G + F+ V + + G R+GA+ A Sbjct: 116 ALTMQQGGGIGYDFSTLRPKGALVRGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMA 175 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 + H D+ +F+ ++ D R + N + D FM+ V+ ++ W L Sbjct: 176 TMRCDHPDIMDFVTAKQ----DPLRLRNFNVSVLCTDEFMEAVSADSDWDLVF------- 224 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + KV++ I A LW +L + P + F D N Sbjct: 225 ----------------------DGKVYQTIKAKELWDAILWNTYNYAEPGVIFIDRINKE 262 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ--FDYDKLAST 624 + + + ++N C E L C LGS+NL H F Q D L T Sbjct: 263 NNLWFLETIAATNPCGEQPL----PPYGACLLGSVNLAKHVVFPFVKGQAEIDMGMLEQT 318 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +RT VR+LD+V++ + +E + R GLG+ G AL + Y S +AV+ D Sbjct: 319 VRTGVRILDSVVETSLFPLEAQRDEARFKRRQGLGVTGLADALFMTGHKYGSEQAVDFTD 378 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR-TSR 743 M I+ A S+++A+E G + E R++ + R Sbjct: 379 TIMMNIAIWAYEESIKMAKEMGPAPCL----------------VSKEAREKFIQSGFMQR 422 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802 +P +K + G+RNS+ +++APT TI+ G VS +P + Y + + D T Sbjct: 423 MP-QYIKVGILEWGIRNSHLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT-- 479 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + ++D A++ + H G N E I + ATA ++ P I + Sbjct: 480 -------KRTETVYDYAVLK-FEEHFGENDNPEAIW-WWENYMATAQDLTPADHIVMQAV 530 Query: 863 RQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901 QKW+D + S + L E S +Y A+ G K TTY Sbjct: 531 IQKWVDSSISKTVNLPEDISFDDFKAVYDHAYTTGCKGCTTY 572 >gi|167616835|ref|ZP_02385466.1| ribonucleotide reductase system [Burkholderia thailandensis Bt4] Length = 843 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 269/608 (44%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G + R+ D + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+D LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y + E + A + A ASVELA ERGA+ F S Sbjct: 372 IGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYRASVELACERGAFPLFDASR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D++++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLP-DDIREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 +++ +P +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 519 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|237748699|ref|ZP_04579179.1| ribonucleotide reductase large subunit [Oxalobacter formigenes OXCC13] gi|229380061|gb|EEO30152.1| ribonucleotide reductase large subunit [Oxalobacter formigenes OXCC13] Length = 963 Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 172/636 (27%), Positives = 294/636 (46%), Gaps = 91/636 (14%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEF-YNLLS 347 +A + + ++L ++Y N + +E RVA LA E K K+ A EF + L + Sbjct: 19 YAPQEISTEVLLEKY-AKGNETSVE---EVMERVAQALAEVEAPKNKKKYAEEFLWALQN 74 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGL 400 F + +G + L +CF+ V D + GI+ AL + A + GG+ Sbjct: 75 GFIPAGRVSSAAGTGLQT-TLINCFVQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGV 133 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G +++ +R GA + GT + G I ++KV + + V G R+GA A L H D+ Sbjct: 134 GYNFSSIRPRGAKVRGTGSSASGPISYMKVFDRSCETVESAGARRGAQMAVLNIDHPDIV 193 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF+ +++ ++ + + N + + D FM+ V + + L E ++ E+ Sbjct: 194 EFITIKQ----EQNQLSNFNVSVGVTDKFMQAVESDGDFELAHVAEPNN---------EL 240 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 + ++AD G+ V+ K+ A +W ++ + P + + D N + + V+ Sbjct: 241 KEKGSYKRAD-GKW-VYSKVKARDIWDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIE 298 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNV 635 ++N C E L + C LGS+NL + A+ FD++ A + AVR+LDNV Sbjct: 299 ATNPCGEQPL----PDYGCCCLGSLNLTSFVTAPFSAHPLFDFNLFARVTKIAVRMLDNV 354 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + +E+ K R IGLG G AL +L I Y S EA ++ E + + A Sbjct: 355 LTATKWPLEEQAKEAAAKRRIGLGFTGLGDALIMLGIRYDSEEARILSSEISKAMRDAAY 414 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 S S++LA+ERGA FP + +V + L SRLP +E+K +++ Sbjct: 415 SGSIDLAKERGA-------------FP------MLDVENYLKGGFVSRLP-EEMKAQIRK 454 Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ +IAPT TI A S I+P++ Y + D + N + V + R Sbjct: 455 HGIRNSHLTSIAPTGTISLAFADNASNGIEPAFSWFYNRVKRMPDGSKKN-YTVEDHAYR 513 Query: 814 DLWDEAMISDLKYHDGSIGN-IERIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQ 869 Y S+GN + ++PD +A E ID M ++ + + +ID Sbjct: 514 -----------IYR--SMGNDVSKLPD----YFVSALEISAIDHMLMVAAVA---PYIDA 553 Query: 870 A--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901 A +++N+ + P + +Y +AW GLK TTY Sbjct: 554 AISKTVNVAEEYPY-EDFKNLYMEAWKKGLKGITTY 588 >gi|251797975|ref|YP_003012706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. JDR-2] gi|247545601|gb|ACT02620.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. JDR-2] Length = 864 Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 124/489 (25%), Positives = 222/489 (45%), Gaps = 39/489 (7%) Query: 317 PQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFM-CSTPTLFNSGTRHPQLSSCF 372 P+ + R+A +A E +EKR F +L + + + L +C+ Sbjct: 86 PEEMWNRLAGAMAGVEQGEEKRRTWTERFRYILDDWKLVPGGRIAAGAGASDELTLFNCY 145 Query: 373 LTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + P D G I L E + GG+G + + +R A + G NG S G + + + Sbjct: 146 VIPSPKDSRGGIMTTLSEMTEIMARGGGVGINLSSLRPRRAVVAGVNGSSSGAVSWGGLF 205 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + T + QGG R+GA+ + WH DV +F+ +++ G + + N + + + FMK Sbjct: 206 SYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVSNAFMK 261 Query: 492 RVTQNAGWTLFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 V ++ W L PD + +D +L+ + E A++ ++ + ++ + A +W ++ Sbjct: 262 AVKEDLDWELVFPDTKETDYDELWDGDLE-AWKKLGKK-----VVHYKTVRARDVWHTII 315 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 +++ P + F + N S + + +N C E L VCNL +INL Sbjct: 316 ESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAINLSKF 371 Query: 611 FANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + ++ D +++L + +VR LDNVID + E+ +K+ R +GLG MG + Sbjct: 372 YDESKHDVNWEELGKVTQWSVRFLDNVIDTTPYHFEENEKNQKKERRVGLGTMGLAELMI 431 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L + Y SPE++ D+ F++ A AS E+A E+G++ +F + Q F Sbjct: 432 KLGVRYGSPESLLFLDKIYGFMAREAYLASAEIASEKGSFEAFDAEKFLQSGF------- 484 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 N S P E+ + V GMRN + APT + + G S I+P + Sbjct: 485 --------MKNMVSEFP--EVGEAVLAKGMRNVTVITQAPTGSTGTMVGTSTGIEPYFAF 534 Query: 789 LYVKSNMSG 797 Y + + G Sbjct: 535 EYFRQSRLG 543 >gi|312114419|ref|YP_004012015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodomicrobium vannielii ATCC 17100] gi|311219548|gb|ADP70916.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodomicrobium vannielii ATCC 17100] Length = 762 Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 147/589 (24%), Positives = 246/589 (41%), Gaps = 97/589 (16%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAML 393 EKR F + ++ F F+ + L +GT R L +CF + + DD+ IF ++E A+ Sbjct: 51 EKR---FLDAMADFAFIPAGRILAGAGTGRDVTLFNCFVMGEIGDDMGSIFAHVREAALT 107 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 + GG+G+D++ +R GA + G + G + F+ V + + G R+GA+ L Sbjct: 108 LQQGGGIGHDFSTLRPKGAPVKGVGADASGPVSFMDVWDAMCRTIMSAGSRRGAMMGTLR 167 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E F++ + D R + N + + D FM+ V +A W L Sbjct: 168 CDHPDIEAFIEAKA----DPARLRNFNLSVLVTDAFMEAVKADARWPL------------ 211 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +E VFR++SA LW K++ ++ P + F D N + Sbjct: 212 -------TFEG----------TVFREVSARGLWLKIMRSAYDYAEPGVIFIDRVNAANNL 254 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628 + ++N C E L C LGSINL A + D +L + A Sbjct: 255 AWCETISATNPCGEQPLPP----YGACLLGSINLAALIEKPFEPEARLDEARLERLVPVA 310 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDN+ID++ + + ++ R IGLG+ G AL Y +A M Sbjct: 311 VRLLDNIIDVSRYPLPSQEREAKAKRRIGLGVTGLADALIFCGAHYGEESGRALAASWMA 370 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 IS A AS LA+E+GA+ F + FP + LP Sbjct: 371 RISELAYEASAALAKEKGAFPLFDAEAFLARPFP-------------------ASLP-PP 410 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTV----VN 803 L+K ++ G+RN +IAPT TI+ + G VS ++P + + + + D + V Sbjct: 411 LQKAIRQHGIRNGVLTSIAPTGTISLLAGNVSSGVEPVFDFEFSRRVLQPDGSARHETVE 470 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + V ++R GS + L A E+ P +E + Sbjct: 471 DYAVRIFRER--------------QGS--------EPLPPAFVAARELTPAQHLEMQAAL 508 Query: 864 QKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+ +D ++++N P + + +Y A+ +GLK R + T Sbjct: 509 QRHVDASISKTVNCPASIPF-EDFEMLYADAYRLGLKGCTAYRPNAVTG 556 >gi|229543872|ref|ZP_04432931.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacillus coagulans 36D1] gi|229325011|gb|EEN90687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacillus coagulans 36D1] Length = 852 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 171/673 (25%), Positives = 279/673 (41%), Gaps = 122/673 (18%) Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT-VP 377 R A GLA E +EKR +FYN L + +F+ + L+ +G+ +C++ VP Sbjct: 136 RNATGLAAVEKTEEKRNEWFEKFYNELVNLNFIPAGRVLYGAGSETEVTYFNCYVMPFVP 195 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D GI ++ + GG+G + + +R G NGKS G + +L Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 255 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD--RRRTHD------ 478 V QGG R+GA L WH D+ EF+ L +NT D+ R+ HD Sbjct: 256 VEQGGSRRGAQMIMLAVWHPDIVEFIISKMQNPRILRFLIENTNDEWIRKLAHDKLKFTP 315 Query: 479 ---MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG-------------------- 515 M + + K + G+T E + + G Sbjct: 316 LSEMERQMYHGIVNYKHIPGQGGFTEEVMKEAEEKLETGGHYTVHNPEFLTGANISVCLT 375 Query: 516 ----------KEFEIAY---ENYERQADR---------GEIK----------VFRKISAV 543 EFE+ + ENY + R G+++ V+RKI A Sbjct: 376 KEFMEAVEQDAEFELKFPDVENYSEEEMRIYNEEWHKIGDVREWEKLGRKVRVYRKIKAK 435 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602 LW + + P + F D N + + G V ++N C E L S VCNL Sbjct: 436 ELWNLINICATYSAEPGVFFIDNANDMTNAKAYGQKVVATNPCGEQPLAPYS----VCNL 491 Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 ++NL + + +D+L T+RT VR+ DNVID + +++ KK R +GLG+ Sbjct: 492 AAVNLAKMVDKETKEVRWDQLKQTVRTGVRMQDNVIDATPYFLKENKKQALGERRVGLGV 551 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG L + Y S E ++ D+ E I+ A AS+E+A+E+G++ G ++ Sbjct: 552 MGLADLLIYMEKEYGSEEGNKLVDKVFETIATEAYRASIEIAKEKGSFPFLTGETEEE-- 609 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 L E + +P D ++K + G+RNS+ + +APT + + GVS Sbjct: 610 -----TNRLRHAFTETGYMKN--MPED-IRKAILKHGIRNSHLLTVAPTGSTGTMVGVST 661 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 ++P + Y +S G F VN+ +V E L H E D Sbjct: 662 GLEPYFSFSYFRSGRLGKFIEVNADIVQEY-------------LDKHP------ETDKDH 702 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGL 897 L TA ++ P + Q+W+D S++ ++ P G ++++ +Y + + G Sbjct: 703 LPNWFVTAMDLAPEAHADVQCVIQRWVD--SSISKTVNAPRGYTVEQVEKVYERLYKGGA 760 Query: 898 K--TTYYLRSRSA 908 K T Y SR + Sbjct: 761 KGGTVYVDGSRDS 773 >gi|197294206|ref|YP_001798747.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma australiense] gi|171853533|emb|CAM11391.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma australiense] Length = 856 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 180/702 (25%), Positives = 299/702 (42%), Gaps = 94/702 (13%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E ++ E VK +L H + L +L + YE DF +Y QI D Y + Sbjct: 188 EALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFLSQYNEQQIK-DIY-------K 239 Query: 314 IEMPQAFFMRVAMG-------LALK--------ETEKEKRAVE-FYNLLSSFH------- 350 I + F MG ALK ET +++ V Y+ F Sbjct: 240 IAYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQGDFEIAKRLIK 299 Query: 351 ------FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 F +TPTL N+G +H + SCFL D L I + + L+K GG+ + Sbjct: 300 SLINQDFTPATPTLLNAGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSIN 359 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R G I G G +GV+ K+ + + +Q G+R GA YL +H D+E+FL Sbjct: 360 ITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLSVFHADIEDFL 419 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D+ R ++ +P+ ++ +N F P V Y K F Sbjct: 420 STKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTV---FLEYEKNFADIAV 476 Query: 524 NYERQAD--RGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 N + D KV +K I L + M E+G+P++ F D N ++ H+ V Sbjct: 477 NMDYWYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVN-QNNTSHLQ-VK 534 Query: 581 SSNLCTEI---TLNS------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 SNLCTEI T+ S ++E + S NL + +N + + + T+ A+ V Sbjct: 535 FSNLCTEILQPTITSHYTDYNHTQEDKIGMDVSCNLASGHMSNMINNNTIKETVFMAMEV 594 Query: 632 LDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 ++ V + N + + K+N +R++G G+MG L +I + S E ++ D I Sbjct: 595 MNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAI 654 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---- 745 +++++ S + A++ G + F+ S + G + +L + M LP Sbjct: 655 NYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMFANIPLPSEKD 714 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W +LKK V+ G+ NS+ +A+AP TI I G + S+ P Q Sbjct: 715 WQQLKKDVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQ------------------ 756 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV E + + LK + ++ TA++++ LI+ + QK Sbjct: 757 LVEERTYGNSKTYCPMPGLK--------------ETSFMYVTAYKMNKYQLIDVIATAQK 802 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ S L + + + ++L Y A G+KT YY R++ Sbjct: 803 HVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYTRTQ 844 >gi|320450942|ref|YP_004203038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermus scotoductus SA-01] gi|320151111|gb|ADW22489.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermus scotoductus SA-01] Length = 586 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 158/636 (24%), Positives = 266/636 (41%), Gaps = 98/636 (15%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLS 347 F + L + RY L R+ P+ + R+ G+ T EK A EF L S Sbjct: 18 FQGDELRASVFLHRYALKDPEGRLLEATPEEMWQRLVQGV----TRVEKGATQEFSWLFS 73 Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405 F F+ LF G R L +C+ + +D + GI L E A Y GG+G++ Sbjct: 74 DFRFVPGGRILFGLGNWRRSTLFNCYYIPIREDSVKGITRFLDEAARTFAYGGGVGSNAD 133 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA + +S G + F+++ + A + G R+GA+ H D+ +FL + Sbjct: 134 ALRPKGAKVGNAGMESSGAVSFMELFSTLAGVMGASGGRRGALMLTFSDTHPDLLDFLQV 193 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + T +R R N + D F++ + WTL F E+ Sbjct: 194 K--TDPERSRVRHANISLRATDAFLQAALADEPWTL---------------SFTTPREH- 235 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNL 584 + R I A W ++ +++ P + F D + Q+ G+ V N+ Sbjct: 236 ----------ITRTIRAKEAWDLLVEAAWQSAEPGLLFWDRVRTWATAQYGGMEVEGVNV 285 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDI 638 C E+ + E CNLGS+NL+A F F DY L R AVR LD V+D+ Sbjct: 286 CGEVPM----EPYGACNLGSLNLVA-FVQEPFTDRARLDYAGLEEATRLAVRFLDAVVDL 340 Query: 639 --NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N H + ++++ R +GLG+MG L +L +PY + E++ A+E M I A Sbjct: 341 GKNRHPLRAQREASLRSRRVGLGIMGLADTLAMLGLPYGAEESLTFAEEVMRRIKEAAYW 400 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S LA++RG++ +F + ++ + LP + L + V+ Sbjct: 401 ESTRLARQRGSFPAF-------------------DPKEHIKSPFIQSLP-EALIQAVEK- 439 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RN+ ++IAPT +I+ + GV+ I+P + Y++ F + L ++R Sbjct: 440 GLRNAALLSIAPTGSISILAGVTSGIEPIFALTYLRHAGGQVFLAEHPLLKRYRRERG-- 497 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +PD TA + P + + Q+ +DQ+ S + Sbjct: 498 ------------------GEVPD-----WPTAHTVAPFQRVRLQATLQRHVDQSISSTVN 534 Query: 877 LDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSV 911 L + K+ ++ ++ AW G K R S V Sbjct: 535 LPRETPKEVVENLFLTAWKEGCKGITVFREGSREEV 570 >gi|114797863|ref|YP_760266.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomonas neptunium ATCC 15444] gi|114738037|gb|ABI76162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomonas neptunium ATCC 15444] Length = 731 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 156/623 (25%), Positives = 267/623 (42%), Gaps = 96/623 (15%) Query: 296 LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFM 352 L +I +Y F G +++ A RVA +A E ++ F + L+ F F+ Sbjct: 7 LAAEIWEKKYRFRSDEGEDVDL-AATLSRVANAVAKAENPANRKVWRARFRDALTDFRFI 65 Query: 353 CSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + L +GT R+ L +CF + T+PD+L GIF L+E A+ + GG+G D++ +R Sbjct: 66 PAGRILAGAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIRPS 125 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + G ++ G + F+ + + G+R+GA+ L H D+E F+D ++ Sbjct: 126 GAPVMGVGAQASGPLSFMDTWDAMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR--- 182 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D R + N + + D FM + WTL ++ Q Sbjct: 183 -DGARFRNFNLSVLVTDEFMAALEAGRDWTL----------------------SFNGQP- 218 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +R + A LW +++ ++ P + F D N + + + +SN C E L Sbjct: 219 ------YRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGEQML 272 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIE 644 C LGSINL A ++ F+ D L + TA+R LDNVIDI+ + +E Sbjct: 273 ----PPYGACLLGSINL-ARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLE 327 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + + R +GLG+ G AL Y S +AV +++ M I A AS LA E Sbjct: 328 QQGEEARAKRRLGLGVTGLADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAE 387 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G Y F ++ D+ + +GL + R ++ + G+RN Sbjct: 388 KGPYPLFDKAILDR----PNLLGLDPDTRALISEH-----------------GLRNGCLT 426 Query: 765 AIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +IAPT T + + VS ++P + Y + D T V + + + +W Sbjct: 427 SIAPTGTTSLLADNVSSGVEPVFAFSYSRKVRQADGTSVEEPVTDYALR--VWHRLHGDA 484 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 D + P D ++ A+A Q+++D S++ ++ P+ Sbjct: 485 APPADVFVSAQTLTPQDHLRMQASA---------------QRFVD--SSISKTVNCPADI 527 Query: 884 KLDF---IYRQAWLMGLK--TTY 901 D +YR+ + +G K TTY Sbjct: 528 SFDAFKDVYREGYRLGCKGLTTY 550 >gi|89099226|ref|ZP_01172104.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. NRRL B-14911] gi|89086072|gb|EAR65195.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. NRRL B-14911] Length = 849 Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 173/678 (25%), Positives = 285/678 (42%), Gaps = 132/678 (19%) Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--TRHPQLSSCFLTTVP 377 R A GLA E +EKR +FY+ L S +F+ + L+ +G T + + V Sbjct: 134 RNATGLAAAEATEEKRKEWFEKFYHELVSLNFIPAGRVLYGAGADTDVTYFNCYVMPFVQ 193 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D GI ++ + GG+G + + +R G NGKS G + +L Sbjct: 194 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 253 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDDRRRTHDMNTANW-- 484 V QGG R+GA L WH D+ EF+ L +NT D+ + + + Sbjct: 254 VEQGGSRRGAQMIMLTDWHPDIIEFIISKMQNPRILRFLLENTQDETIKRYASEKLKFTP 313 Query: 485 -----------------IPDL--FMKRVTQNA--------GWTLFSPDEVS--------- 508 IP L F +++ ++A +T+ +P+ ++ Sbjct: 314 LTEQETNMYQGIINYKQIPGLGGFSEKIIKDAENKLAAGGNYTVHNPEFLTGANISVCLT 373 Query: 509 -DLHDLYGK--EFEIAY---ENYERQADR---------GEIKVFRK----------ISAV 543 D D K E+E+ + E+Y+ + + G+++ + K I A Sbjct: 374 KDFMDAVEKDAEYELRFPDVESYDAETMKIYNEEWHKIGDVREWEKLGHKVRTYRKIKAK 433 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602 LW + + P I F D N + Q G V ++N C E L S VCNL Sbjct: 434 ELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGEQPLAPYS----VCNL 489 Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 ++NL +A N D++KLA T+ VR+ DNVID + +E+ KK R +GLG+ Sbjct: 490 AAVNLAEMADKENKTVDFEKLARTVEVGVRMQDNVIDATPYFLEENKKQALGERRVGLGV 549 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG L Y S + E+ D+ E I+ A ASVELA E+G++ G+ Sbjct: 550 MGLHDLLIYCETEYGSEKGNELIDKVFETIAVTAYKASVELAGEKGSFPFLTGA------ 603 Query: 721 FPIDSIGLLAEVRDELAMNRT-----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 E L N T ++P D +++ + G+RNS+ + +APT + + Sbjct: 604 --------TDEETSRLRQNFTEAGFMQKMPED-VRQSILEKGIRNSHLLTVAPTGSTGTM 654 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVS ++P + Y +S G F V + +V E R N + Sbjct: 655 VGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDR-------------------NPD 695 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQA 892 P++L + +A E+ P + Q+WID S++ ++ P G ++++ +Y + Sbjct: 696 ADPENLPEWFISAMELSPEAHADVQCVIQRWID--SSISKTVNAPKGYSVEQVEGVYERL 753 Query: 893 WLMGLK--TTYYLRSRSA 908 + G K T Y SR + Sbjct: 754 YRGGAKGGTVYVDGSRDS 771 >gi|325968165|ref|YP_004244357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Vulcanisaeta moutnovskia 768-28] gi|323707368|gb|ADY00855.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Vulcanisaeta moutnovskia 768-28] Length = 1312 Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 189/387 (48%), Gaps = 24/387 (6%) Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282 +LL + ++V K + Y E F + G++ R+ M + ++ Sbjct: 86 YLLWSMYKQVWGKDVVKAINDGRTRFEDAYREGFRAWFRTGLELRIWDSEMSAWYAQHID 145 Query: 283 NDLKY---ERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 KY RD Y G++ L RY L ++GS E PQ +MR AMG+A E + Sbjct: 146 ELAKYLDPSRDLLLTYNGVRTLMSRYLLKRLDGSFFEAPQYLWMRTAMGVAYAELKYGGD 205 Query: 339 AV----EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-------------- 380 + FY+L+S M ++PTL+N+ TR QLS+CF+ + D L Sbjct: 206 PITWTRRFYDLMSQLKLMPNSPTLYNAMTRLGQLSACFVVPIDDCLSRESDTNREDPECN 265 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 +GI AL+ A++ + GG+G ++ +R G + T G + G + F+K+ + + Q Sbjct: 266 FGIMDALRLAALIFQSGGGVGYNFGKLRPEGDIVRSTTGIASGPLSFMKLFDTLVDTIKQ 325 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKR+GA L WH D+E+F+ + D + + N + I D FM++ + Sbjct: 326 GGKRRGAQMGMLFWWHPDIEKFITSKSGELKD-IQLQNFNISVAIDDHFMQKALKGEDIY 384 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +P E L+ +G+EF YE G+I+++R+I+A LW K++ +++G P Sbjct: 385 LVNPRECPCLYKTWGEEFIKCYEGCIEAIKAGKIRIWRRINAKELWDKIVKSAWDSGDPG 444 Query: 561 ITFKDPCNIRSPQQHVG-VVHSSNLCT 586 + +D N + ++ G V++++N C Sbjct: 445 LWNRDLANYINNEKIPGEVINATNPCV 471 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 170/358 (47%), Gaps = 43/358 (12%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL+ + + + D+D LA ++ AVR LD+VID+N ++ +K R IGLG Sbjct: 898 CNLGSINLVKYVYDGRIDWDSLARDVQLAVRFLDDVIDVNKLPHDRLRKRVLETRRIGLG 957 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G L L + Y SP+A+ +++E FI+ A+ AS+ELA+E+G Y ++K S W +G Sbjct: 958 ANGLADTLIALGLKYDSPQALAVSNELASFIARMAVRASIELAKEKGVYPAYKHSDWAEG 1017 Query: 720 VFP--------------IDS----------------IGLLAEVRDELAMNRTSRLPWDEL 749 V P ID I + A + + R + +L Sbjct: 1018 VLPWTKHRERLEKFSSAIDKDAVDEYLKTLDVGYGDIKVKAIIDGATTVLRGYKASDSDL 1077 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 V TIG+RN + M+IAP + + I GV+ SI+P + Y+++ G N + Sbjct: 1078 SIDVSTIGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKLIEYNYTALKL 1137 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAFEIDPMWLIESASRRQKWI 867 L Q DEA S ++ + +P D L + TA EI W + +W Sbjct: 1138 LMQTKALDEATRSFVEEYG-------ILPRDHPLANLLRTAHEIHWKWHVYMQVTWARWN 1190 Query: 868 DQ--AQSLNLYLDEPSGKKLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLKGVDGK 922 D ++++N+ D P + ++ YR AWL+ T Y + V + +KG + K Sbjct: 1191 DSGVSKTINMPSDTPI-EDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGVKGAEAK 1247 >gi|291240499|ref|XP_002740156.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Saccoglossus kowalevskii] Length = 316 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 7/258 (2%) Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 KA+ SN HR IG+G+ G A L+ P+ S EA+ + + E I + A+ AS ELA+ Sbjct: 61 KARNSNMRHRPIGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAER 120 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y S+K + G P+ S G+L D + T WD LKK + T G+RNS + Sbjct: 121 DGVYESYK---FGDGC-PV-SKGILQ--YDMWDVTPTDLHDWDALKKDIATHGLRNSLLL 173 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ A I G ++S++P N+Y + +S +F VVN L+ +L + LW++ M + L Sbjct: 174 APMPTASTAQILGNNESVEPYTTNIYSRRVLSKEFQVVNHHLLKDLTEMGLWNDDMKNLL 233 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 ++GSI +I+ IPD +KK++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ K Sbjct: 234 IANNGSIQSIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGK 293 Query: 885 LDFIYRQAWLMGLKTTYY 902 L ++ AW GLKT Y Sbjct: 294 LTSMHFFAWKQGLKTGMY 311 >gi|76818467|ref|YP_337183.1| ribonucleotide reductase, coenzyme B12-dependent [Burkholderia pseudomallei 1710b] gi|76582940|gb|ABA52414.1| Ribonucleotide reductase, Coenzyme B12-dependent [Burkholderia pseudomallei 1710b] Length = 871 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 62 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 116 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 117 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 176 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 177 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 232 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G R+ D G + V+ + A A Sbjct: 233 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 282 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 283 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 338 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+ LA RT VR LD+V+D+ + + + R Sbjct: 339 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 398 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S + + A + A ASVELA+ERGA++ F + Sbjct: 399 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 458 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D +++ ++ G+RNS+ ++IAPT T+ Sbjct: 459 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 498 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G +G Sbjct: 499 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 548 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 549 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 600 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 601 DAWKSGLK 608 >gi|237745665|ref|ZP_04576145.1| ribonucleotide reductase large subunit [Oxalobacter formigenes HOxBLS] gi|229377016|gb|EEO27107.1| ribonucleotide reductase large subunit [Oxalobacter formigenes HOxBLS] Length = 957 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 164/635 (25%), Positives = 288/635 (45%), Gaps = 89/635 (14%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEF-YNLLS 347 FA + + ++L ++Y S E+ + RVA LA E K ++ A EF + + + Sbjct: 12 FAPQEISTEVLLEKYAKGDETSAEEVME----RVACALAEVEAPKSRKKYAEEFLWAMQN 67 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGL 400 F + +G + L +CF+ V D + GI+ AL + A + GG+ Sbjct: 68 GFIPAGRVSSAAGTGLQT-TLINCFVQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGV 126 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G +++ +R GA + GT + G I ++KV + + V G R+GA A L H D+ Sbjct: 127 GYNFSSIRPRGAKVRGTGSSASGPISYMKVFDRSCETVESAGARRGAQMAVLNIDHPDIL 186 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF+ +++ ++ + + N + + D FM+ V ++ + L E +D E+ Sbjct: 187 EFITVKQ----EQNQLSNFNVSVGVSDEFMRAVETDSDFELAHTAEPND---------EL 233 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 + ++AD G+ V+ +I A +W ++ + P + + D N + + V+ Sbjct: 234 KEKGAFKRAD-GKW-VYNRIKAREVWDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIE 291 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNV 635 ++N C E L + C LGS+NL + A FD++ L + AVR+LDNV Sbjct: 292 ATNPCGEQPL----PDYGCCCLGSLNLTSFITAPFSAQPLFDFNLLTRVTKIAVRMLDNV 347 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + +E+ + R IGLG G AL +L I Y S +A ++ E + + A Sbjct: 348 LTATKWPLEEQAREAAAKRRIGLGFTGLGDALIMLGIRYDSEKARILSAEIAKAMRDAAY 407 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 + S+ELA+ERG + + +G F SRLP +E+K++++ Sbjct: 408 TGSIELAKERGGFPMLDVERYLEGGF-------------------VSRLP-EEMKEKIRK 447 Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ +IAPT TI A S I+P++ Y + D K Sbjct: 448 HGIRNSHLTSIAPTGTISLAFADNASNGIEPAFSWFYNRVKRMPD---------GSRKNY 498 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQA 870 + D A + + ++ ++PD +A E ID M ++ + + +ID A Sbjct: 499 TVEDHA----YRVYRSMNNDVSKLPD----YFVSALEISAIDHMLMVAAVA---PYIDAA 547 Query: 871 --QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901 +++N+ D P + +Y +AW GLK TTY Sbjct: 548 ISKTVNVAEDYPY-EDFKNLYMEAWKKGLKGITTY 581 >gi|213584526|ref|ZP_03366352.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 478 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 146/508 (28%), Positives = 233/508 (45%), Gaps = 71/508 (13%) Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA Sbjct: 9 ANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENA 68 Query: 498 GWTLFSPDEVSDLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP D+ YGK F +IA E Y E AD K + I+A ++ + + F Sbjct: 69 QMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQF 123 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNL 602 E+G+ +I F+D N +P G ++ SNLC+EI +NS+S CNL Sbjct: 124 ESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNL 181 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 GS+N +AH D + T+ TA+R L V D+ + ++ N AIGLG M Sbjct: 182 GSLN-IAHV----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQM 236 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 L I Y SPEA++ + I++HA+ S+ LA+ERG ++ F S + G Sbjct: 237 NLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGD 296 Query: 721 FPI-----DSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + D A+VR A + +R W +L+ V G+ N N A+ PT +I Sbjct: 297 YFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSI 356 Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + + K +G F+ NE Sbjct: 357 SYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------- 394 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 N++ D A++I P +I++ + + +DQ SL L+ D + + ++ Sbjct: 395 -NLDMYQD--------AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQI 445 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKG 918 AW G+K+ YY+R R ++E + ++G Sbjct: 446 YAWRKGIKSLYYIRLRQ-LALESTEIEG 472 >gi|167905562|ref|ZP_02492767.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei NCTC 13177] gi|254185407|ref|ZP_04891995.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1655] gi|184209642|gb|EDU06685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1655] Length = 844 Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G R+ D G + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+ LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S + + A + A ASVELA+ERGA++ F + Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D +++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G +G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|53721516|ref|YP_110501.1| ribonucleotide reductase protein [Burkholderia pseudomallei K96243] gi|126443851|ref|YP_001061740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 668] gi|134283051|ref|ZP_01769753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 305] gi|167741547|ref|ZP_02414321.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 14] gi|167818742|ref|ZP_02450422.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 91] gi|167827116|ref|ZP_02458587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 9] gi|167848614|ref|ZP_02474122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei B7210] gi|167913872|ref|ZP_02500963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 112] gi|167921786|ref|ZP_02508877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei BCC215] gi|217424572|ref|ZP_03456070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 576] gi|226196550|ref|ZP_03792131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pakistan 9] gi|254187293|ref|ZP_04893807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254198951|ref|ZP_04905369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei S13] gi|254264773|ref|ZP_04955638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1710a] gi|254296714|ref|ZP_04964168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 406e] gi|52211930|emb|CAH37935.1| putative ribonucleotide reductase protein [Burkholderia pseudomallei K96243] gi|126223342|gb|ABN86847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 668] gi|134245699|gb|EBA45791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 305] gi|157806658|gb|EDO83828.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 406e] gi|157934975|gb|EDO90645.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pasteur 52237] gi|169657123|gb|EDS88517.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei S13] gi|217392496|gb|EEC32520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 576] gi|225931426|gb|EEH27432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pakistan 9] gi|254215775|gb|EET05160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1710a] Length = 844 Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G R+ D G + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+ LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S + + A + A ASVELA+ERGA++ F + Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D +++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G +G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|9628064|ref|NP_042658.1| ribonucleotide reductase large subunit [Equid herpesvirus 2] gi|82013697|sp|Q66663|RIR1_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|695234|gb|AAC13849.1| ribonucleotide reductase large subunit [Equid herpesvirus 2] Length = 799 Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 170/690 (24%), Positives = 290/690 (42%), Gaps = 95/690 (13%) Query: 260 IEEGVKARLLHESMMDFDLVY--LANDLKYERDFAFEYLGLQILYDRYFLHIN-----GS 312 +E+GV R L ++ D D + N +YER + L + +YD Y L G+ Sbjct: 71 LEKGVH-RFLWDNARDIDDLCKDFQNGPEYERLISRGMLSAKRMYDTYVLRTEEGGGEGA 129 Query: 313 RIEMPQAFFMRVAMGL--------ALKETEKEKRA------------VEFYNLLSSFHFM 352 E + R+A +L++T E F+ +L+S Sbjct: 130 VYESALQMYARMAAFFTCQCFAYPSLRKTVSEVEGGSGRMESGLDFFAYFFKILASQLVS 189 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 C+TP + ++G R L+SCF+ PD E+ L+ L G+G Sbjct: 190 CATPVMRSAGLRQSYLASCFIMN-PD-------MSTEDKTLSAVFRDLSPLLCSKSGVGM 241 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 ++ + + V L++ N N R +V AY+E WH +EEFL + ++ Sbjct: 242 NLTNFSSGGKNVQSCLRLINSQVEFCNDKNLRPVSVAAYMELWHEQIEEFLAAK--LPEN 299 Query: 473 RRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 R + +P LF + QN + W LFSP L LYG +F+ E Y R Sbjct: 300 PERCQSIFQGVCVPGLFFRLYEQNPDSQWHLFSPKVGGHLAGLYGDKFD---EEYARLVR 356 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589 G + A +L +++ + +TG P+I KD N + G + +NLC E+ Sbjct: 357 HGLYS--SSLPAKSLMFALISAIIKTGSPYILSKDAINRHHWFETQGNAISYANLCAEV- 413 Query: 590 LNSSSEETAVCNLGSINLLAHF-------------------------ANNQFDYDKLAST 624 + E T+ CNL ++ L A + +F +D L + Sbjct: 414 VQQPHEFTSTCNLANVCLPACLRARGEGEGAGAAGEGEGADRLSPLTPDLEFCFDTLRAA 473 Query: 625 IRTAVRVLD-NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R AV +++ +++ C T + R+ G+G+ G L Y E+ + Sbjct: 474 VRAAVYMINASILGGVCPT--PGVRVMQAERSAGIGVQGLADVFAKLGRGYMDAESALLD 531 Query: 684 DESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 E + + A+ AS +L GA ++++K S +G F +S G+ D L + R Sbjct: 532 ARIFEVMYYQAVRASNQLVTVGGAPPHANWKNSKLSRGEFHWESWGV---QYDSLFIERQ 588 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W+EL++ V G NS +A+ PTA + + G+S+S P Y N+ K + + Sbjct: 589 L---WEELRESVTKHGTFNSQFIALMPTAGTSQLTGLSESFYPFYANVSSKVSNKEEVMK 645 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMWLIE 858 N + + D + LKYH G++ ++P L + TAF+ P I Sbjct: 646 PNITFLERVSPSD------VPLLKYHG---GDVSKLPPPLAAKYRNFLTAFDYSPEDQIR 696 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 A+ R ++DQ+QS + +L E + K ++ Sbjct: 697 RAAARSPFVDQSQSFSFFLKEANVKSASYV 726 >gi|167897188|ref|ZP_02484590.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 7894] Length = 844 Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G R+ D G + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+ LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFAIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S + + A + A ASVELA+ERGA++ F + Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D +++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G +G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|91791016|ref|YP_551967.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] gi|91700896|gb|ABE47069.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] Length = 784 Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 151/579 (26%), Positives = 251/579 (43%), Gaps = 88/579 (15%) Query: 364 RHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 R + +CF+ V D + G I AL+E+A + GG+G D++ +R +GA + Sbjct: 77 RVSTMINCFVQPVGDSMSGSNQDGQPGIMDALRESAETMRRGGGVGYDFSSIRPVGARVK 136 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 GT+ K+ G + +++V + V G R+GA + H D+E F+D +K T D + Sbjct: 137 GTDSKASGPVSYMRVFDRMCQTVESAGARRGAQMGVMRVDHPDIEMFIDAKK-TPDFSQM 195 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSP--------------DEVSDLHDLYGKEFEIA 521 D A+ + DL K Q GW+L S DE + + +F++ Sbjct: 196 GLDKKDADGLLDLVRK--NQGFGWSLRSAFATLSNFNISVAVTDEFMNAV-VNDSDFDLV 252 Query: 522 YENYERQA-------DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 ++ +A D V+R + A+ +W K++ + P + F D N + + Sbjct: 253 HDAEPVEACPTKVCTDGKARFVYRTVKAIEIWTKIMRNTYYGAEPGVLFIDRINQDNNLR 312 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + V+ ++N C E TL C LGS NL +N FD+D L+ + AV Sbjct: 313 YCEVIKATNPCGEQTL----PPYGCCCLGSPNLTRFVSNPFTLMASFDFDGLSKVVAKAV 368 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +LD V+D + + R IGLG G A+ +L I Y S + + A E Sbjct: 369 EMLDKVLDKTHWPLPQQASEAANKRRIGLGHFGLADAMAMLGIRYDSQQGADFAAHVSEV 428 Query: 690 ISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + A ASV LA+ GA+ F + ++G F SRLP ++ Sbjct: 429 LRDSAYMASVNLAKTLGAFPFFDAEKYLEEGTF-------------------ASRLP-EK 468 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +K ++ G+RNS+ ++IAPT TI+ G S I+P + ++ M D + Sbjct: 469 IKDAIRMYGIRNSHLLSIAPTGTISMAFGDNASSGIEPIFSLRQQRNKMMADGS------ 522 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 R +++ + D Y + E D + TA ++ + + Sbjct: 523 ------RQIFE---LEDYAYRQFKLSKGE---DAKSDVFVTAMQMTVADHLRVLGAVAPY 570 Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901 ID A +++N+ D P + +Y AW MGLK TTY Sbjct: 571 IDSAISKTVNVPADYPF-EDFQQVYMDAWRMGLKGITTY 608 >gi|237509777|ref|ZP_04522492.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei MSHR346] gi|235001982|gb|EEP51406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei MSHR346] Length = 844 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 266/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q W L E S G R+ D G + V+ + A A Sbjct: 206 VTDAFMNAVEQGLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+ LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S + + A + A ASVELA+ERGA++ F + Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D +++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G +G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|332285600|ref|YP_004417511.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7] gi|330429553|gb|AEC20887.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7] Length = 949 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 167/603 (27%), Positives = 271/603 (44%), Gaps = 85/603 (14%) Query: 323 RVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379 RVA LA E K ++ A EF + + F+ + +GT L +CF+ V D Sbjct: 40 RVAEALARVEPAKLRKQYAQEFLWAMEN-GFIPAGRVNSAAGTDLQSTLINCFVQPVGDS 98 Query: 380 LY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + GI+ AL + A + GG+G +++ +R GA + GT + G I +++V + Sbjct: 99 ITEEVDGKPGIYTALAQAAETMRRGGGVGYNFSGIRPRGARVKGTGSSASGPISYMRVFD 158 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA A L H D+ EF+ ++ +R + ++ N + + D FM+ Sbjct: 159 RSCETVESAGSRRGAQMAVLNVTHPDIMEFITAKQ----ERGQLNNFNVSVGVSDAFMQA 214 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + LF E+S H+ E Y R D G + V++ + A +W ++ Sbjct: 215 VETDG---LF---ELS--HEAEPTEELKGSGAYLR--DDG-LWVYKAVQAREIWDLIMQS 263 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF- 611 + P + + D N + + + S+N C E L + C LGS+NL A+ Sbjct: 264 TYAAAEPGVLYMDRINQENNLAYCEKIESTNPCGEQPL----PDYGCCCLGSLNLTAYVT 319 Query: 612 ----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A FD++K+ + AVR+LDNV+ +++ + R +GLG G L Sbjct: 320 SPFSATAAFDFEKMKQATKLAVRMLDNVLIATKWPLDEQRLEAENKRRLGLGFTGLGDTL 379 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L + Y S + ++A + + A ASV LAQERGA FP Sbjct: 380 IMLGLRYDSEQGRQLAADFARHMRDAAYEASVALAQERGA-------------FP----- 421 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785 L + + L RLP DELK+ ++ G+RNS+ +IAPT TI A S I+P+ Sbjct: 422 -LLQADEYLNSEFAQRLP-DELKQAIRQHGIRNSHLTSIAPTGTISLAFADNASNGIEPA 479 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y ++ D K + D A + + G+I +PD Sbjct: 480 FSWFYKRTKRMAD---------GSKKDYTVEDHA----YRVYRAMGGDIGALPDAF---- 522 Query: 846 ATAFE---IDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK-- 898 +A E ID M ++ S + ++D A +++N+ D P D +Y QAW GLK Sbjct: 523 VSALEISAIDHMLMVASVA---PYVDAAISKTVNVPADYPYDDFKD-LYMQAWHKGLKGI 578 Query: 899 TTY 901 TTY Sbjct: 579 TTY 581 >gi|145639186|ref|ZP_01794793.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittII] gi|145271748|gb|EDK11658.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittII] Length = 504 Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 141/518 (27%), Positives = 219/518 (42%), Gaps = 53/518 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR+ KA H P ++++ Sbjct: 65 AAADLISKDSPDYQYLAARLAIFHLRK-----------KAYGH----FDPPRLYDHVKKL 109 Query: 264 VKARLLHESMMDFDLVYLAND-----LKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 V+ ++++D D D + + RD F Y ++ L +Y + + G E Sbjct: 110 VRMEKYDQALLD-DYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYES 168 Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371 Q ++ V+ L + KE R FY+ S+F TP + +G R P Q SSC Sbjct: 169 AQFLYLLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSC 225 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L D L I G+G + +R LG+ I G G IPF K Sbjct: 226 VLIECDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYF 285 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +QGG R GA Y WH++ E L L+ N G + R M+ + L + Sbjct: 286 QTAVKSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQ 345 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 R+ + TLFSP +V L++ + +FE Y YE+ + R + AV ++ Sbjct: 346 RLIKGGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSL 401 Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599 ++ TG +I D CN SP V V SNLC EI L N + E A+ Sbjct: 402 LMQERASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIAL 461 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 C L + NL + D+L AVR LD ++D Sbjct: 462 CTLSAFNL-----GKIENLDELEELADLAVRSLDALLD 494 >gi|126457217|ref|YP_001074685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106a] gi|242311219|ref|ZP_04810236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106b] gi|126230985|gb|ABN94398.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106a] gi|242134458|gb|EES20861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106b] Length = 844 Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 158/608 (25%), Positives = 266/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G R+ D G + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+ LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S + + A + A ASVELA ERGA++ F + Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELALERGAFALFDANR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D +++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G +G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|329913475|ref|ZP_08275946.1| Ribonucleotide reductase of class II (coenzyme B12-dependent) [Oxalobacteraceae bacterium IMCC9480] gi|327545350|gb|EGF30583.1| Ribonucleotide reductase of class II (coenzyme B12-dependent) [Oxalobacteraceae bacterium IMCC9480] Length = 794 Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 129/487 (26%), Positives = 219/487 (44%), Gaps = 57/487 (11%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP---QLSSCFLTTVPDD 379 RVA G+A ET + R L + NS P L +CF+ V D Sbjct: 4 RVAKGIAEPETNAKNRKAWTAKFLWAQQNGWVPAGRINSAAGLPLKATLMNCFVQPVGDS 63 Query: 380 LYG-------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + G I+ A+ + A + GG+G +++ +R GA + GTN ++ G I +++V + Sbjct: 64 VTGFSDGKPGIYTAIAQAAETMRRGGGVGYNFSEIRPEGALVKGTNSRASGPISYMRVFD 123 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA L H DV F+ +++ + N + + D FM+ Sbjct: 124 SSCSTVESAGARRGAQMGVLNCDHPDVLNFITAKRDG-----SLSNFNLSVGVTDAFMQA 178 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + L +H + ++R D G + V+++++A +W M+ Sbjct: 179 VASSGTIQL--------IHKAAPGNELMQAGAFQR--DDG-MWVYKEVAAQEIWGLMMQS 227 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++ P I + D N + + + ++N C E L + C+LGS+NL Sbjct: 228 TYDFAEPGILYIDRMNQENNLYYCEKIEATNPCAEQPL----PDYGCCDLGSVNLTLCVT 283 Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + FDY K + ++ +R LDNV+D + +E+ + R IGLG +G SA+ Sbjct: 284 DPFSERASFDYAKFSQLVQIGIRFLDNVLDASQWPLEEQRLEAMNKRRIGLGFLGLGSAM 343 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L I Y S A + E + A ASV+LA+E+GA+ F + + G F Sbjct: 344 VMLGIRYDSDAGRTFAAKVSEEMRDAAYRASVDLAKEKGAFPLFDAAKYLAGAF------ 397 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPS 785 SRLP D +++ + T G+RNS+ ++IAPT TI + G S I+P+ Sbjct: 398 -------------VSRLPAD-IREGIATFGIRNSHLLSIAPTGTITLVFGDNASNGIEPA 443 Query: 786 YQNLYVK 792 + Y + Sbjct: 444 FSWNYTR 450 >gi|296134979|ref|YP_003642221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thiomonas intermedia K12] gi|295795101|gb|ADG29891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thiomonas intermedia K12] Length = 811 Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 153/594 (25%), Positives = 263/594 (44%), Gaps = 78/594 (13%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLT----TVP 377 RVA LA++E + + F L+ F+ + + +GT L +CF+ +V Sbjct: 29 RVARALAVEEADPARSEALFRQALAD-GFVPAGRIMSAAGTDIQATLINCFVQPVGDSVS 87 Query: 378 DDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 DD G I+ AL + A + GG+G D++ +R GAH+ GT+ ++ G + F++V + + Sbjct: 88 DDKDGKPSIYKALAQAAETMRRGGGVGYDFSRIRPAGAHVGGTHSRASGPLSFMRVFDAS 147 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G R+GA L H D+E F+ + D+ + N + + FM+ V Sbjct: 148 CETVESAGSRRGAQMGVLRADHPDIEAFIHAK-----DQGAFKNFNLSVGVSAAFMQAVE 202 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +A ++ +H + ++A +R AD + V+R + A LW +++ + Sbjct: 203 NDA--------QIDLVHKARPGDDQLAAGARQR-AD--GLWVYRSVRARDLWDQIMQSTY 251 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 + P I F D N + + ++N C E L + C LGSINL F + Sbjct: 252 DHAEPGILFLDTANADNNLYYCETFEATNPCAEEFL----PDYGCCCLGSINL-TRFVRD 306 Query: 615 ------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +FD + + R AVR+LDNV+D+ + + R IGLG +G A Sbjct: 307 PFTPQARFDAEGFQAVTRVAVRMLDNVLDVTYWPLVEQHNEAQNKRRIGLGFLGLGDACV 366 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y S +A A + + A +ASV+LA+E+GA+ F + F Sbjct: 367 MLGLRYDSDDARRFAADMARTLRDAAYAASVDLAKEKGAFPLFDAKKYLDSGF------- 419 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786 RLP + L+ + G+RNS+ +A+APT TI A S I+P++ Sbjct: 420 ------------AKRLP-EALRADIAAHGIRNSHLLAVAPTGTISLAFADNASNGIEPAF 466 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 +Y + D N ++ ++ D A + + ++ +P Sbjct: 467 SWVYTRKKRMAD---------NTTREYEVADHAW----RLYRSMGRDMSALP----PAFV 509 Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 TA E+ ++ Q +ID ++++N+ D P D +Y QAW GLK Sbjct: 510 TALEMSAADHMKMLQVVQPFIDTSISKTVNVPADYPYDDFKD-LYLQAWKAGLK 562 >gi|167722571|ref|ZP_02405807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei DM98] Length = 844 Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 157/608 (25%), Positives = 266/608 (43%), Gaps = 90/608 (14%) Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 + RVA G+A E E E R VE L + M + + + L +CF Sbjct: 35 IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89 Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + V D L GI+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 90 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + D FM V Q+ W L E S G R+ D G + V+ + A A Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ ++ P + F N + + + + ++N C E L + CNLG Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311 Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +NL + FA + FD+ LA RT VR LD+V+D+ + + + R Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G G L +L + Y S + + A + A AS ELA+ERGA++ F + Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASAELARERGAFALFDANR 431 Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 + ++G F SRLP D +++ ++ G+RNS+ ++IAPT T+ Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P++ Y ++ + D + +F V + R L+ E G +G Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L +A ++ + + Q +ID ++++N+ D P + +Y Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573 Query: 891 QAWLMGLK 898 AW GLK Sbjct: 574 DAWKSGLK 581 >gi|213022042|ref|ZP_03336489.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 395 Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 121/369 (32%), Positives = 182/369 (49%), Gaps = 29/369 (7%) Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 + SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP Sbjct: 1 MVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPV 60 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD Sbjct: 61 MKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 120 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVA 544 + + +NA LFSP D+ YGK F +IA E Y E AD K + I+A Sbjct: 121 ITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARD 175 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-------- 595 ++ + + FE+G+ +I F+D N +P G ++ SNLC+EI +NS+S Sbjct: 176 FFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYT 233 Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNH 651 CNLGS+N +AH D + T+ TA+R L V D+ + ++ N Sbjct: 234 HIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNA 288 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710 AIGLG M L I Y SPEA++ + I++HA+ S+ LA+ERG ++ Sbjct: 289 ASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAG 348 Query: 711 FKGSLWDQG 719 F S + G Sbjct: 349 FAQSRYASG 357 >gi|51518028|ref|YP_067953.1| BORF2 [Macacine herpesvirus 4] gi|18025479|gb|AAK95423.1| BORF2 [Macacine herpesvirus 4] Length = 822 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 203/785 (25%), Positives = 327/785 (41%), Gaps = 115/785 (14%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 E +L T LI + +P A V A LL +L+ E +T T E ++ + Sbjct: 6 ERELLTKLIDELKVKANVDPE-ADVLAGRLLHRLKAESVTR--------TVAEYMEVFSD 56 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSR 313 F Y EE +A H+ ++ + A YER + YL YD Y ++ NG + Sbjct: 57 KF--YDEEFFQA---HQDELEARVSAFAQSPAYERIVSAGYLSALRYYDTYLYVGRNGRQ 111 Query: 314 IEMPQAFFMRVA----------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTP 356 +P F+MR+A GL A E E + ++Y L+S CSTP Sbjct: 112 ESVPH-FYMRLAGFCASTTCLYTGLRDALLRARPEIETDMEVFDYYFEHLTSQTVCCSTP 170 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 + +G + L+SC LTT G+ + L + + V GLG +G Sbjct: 171 FMRFAGVENSTLASCILTTP-----GLSSEFEVTQALHRPLDRYLYERAGV-GLGVTEYG 224 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 +GK ++ +++ N N KR +V AY+E WH + +FL+ + ++ R Sbjct: 225 KDGKHISLL--MRMINSHVEYHNYLCKRPVSVAAYMEPWHSQIFKFLETK--VPENHERC 280 Query: 477 HDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + T ++P+LF K R + W LF P +L LYG+EFE Y R G Sbjct: 281 PGIFTGLFVPELFFKLFRDEPWSDWYLFEPQNAGNLEKLYGEEFE---REYYRLVTEG-- 335 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSS 593 K ++S +L ++ + G P+I K+ CN + G ++S+NLC E+ L S Sbjct: 336 KFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNSANLCAEV-LQPS 394 Query: 594 SEETAVCNLGSINL-----------LAHFANNQFD-----YDKLASTIRTAVRVLDN--- 634 E A CNL +I L A A+ Q D +L+ T+ + D Sbjct: 395 RETVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLGLPRLSVTMPGEGAIGDGFSL 454 Query: 635 ----------VIDINCHTIEKAKKSNHTHRA-IGLGLMGFQSALHLLHIPYASPEAVEIA 683 + C ++ + + A +GLG+ G L Y P + + Sbjct: 455 ARLRDATQCATFVVACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPSSRSLN 514 Query: 684 DESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPI-DSIGLLAEVRDELAMNRT 741 E E + F A+ S + R + FK S + G F D G + ++ Sbjct: 515 KEIFEHMYFTALCTSNLIGLHTRKTFPGFKRSKYAGGWFHWHDWAGTGLSIPKDM----- 569 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W L +R+ G+ NS +A+ PT+ A + G S + P Y N K + Sbjct: 570 ----WARLSERIVRDGLFNSQFVALMPTSGCAQLTGCSDAFYPFYANASTKVTNKEEALR 625 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMWLIE 858 N R W + D++ + G I R+P+ LK+ + TAF+ + L++ Sbjct: 626 PN---------RAFWRHVRMDDMEAVNLVGGRISRLPERLKRRYLRFQTAFDYNQEDLMQ 676 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKTT-YYLRSRSATSVEKS 914 + R ++DQ+QS +L+L E + L + + + +GLKT YY R +EKS Sbjct: 677 MSRDRAPFVDQSQSHSLFLREEHAARASTLANLLVRGYELGLKTIMYYCR------IEKS 730 Query: 915 TLKGV 919 GV Sbjct: 731 ADLGV 735 >gi|297565747|ref|YP_003684719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Meiothermus silvanus DSM 9946] gi|296850196|gb|ADH63211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Meiothermus silvanus DSM 9946] Length = 1014 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 165/631 (26%), Positives = 274/631 (43%), Gaps = 105/631 (16%) Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428 VPDD+ GI ++ +A D++ +R G I G+ G S G + FL Sbjct: 214 VPDDMGGIIDTARDAVAMAGKGQEPHVDFSLLRPEGTPIKGSGGTSSGPVSFLLEIFDNF 273 Query: 429 ------------------KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL---DLRK 467 V + V QGG R+GA A L H D+ +FL DL + Sbjct: 274 LEWGNLGAEKSGPVATLRYVYSPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDLDR 333 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYEN 524 + T N + + + F + + W + P EV + Y G+ E Sbjct: 334 EAAEGDIST--FNISILVTEAFWNTLQADGLWAV-EPAEVPGKYYPYLVQGEYTGALPEL 390 Query: 525 YERQADRGE-IKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VV 579 +R+ D I V+ K+ A LW ++ + TG P + F D N S +H+G + Sbjct: 391 PDREVDGARAIPVYEGKVPAKWLWHEIAWHAWATGEPGLIFVDRINELSALKHLGERYRI 450 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDI 638 ++N C EI L C+LG+INL A+ ++ FDY + +RT +R LDNV+D+ Sbjct: 451 RATNPCGEIPLTVGEP----CDLGAINLAAYVREDKTFDYATFRADVRTCIRFLDNVLDV 506 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N +E + ++ + R +GLG+MG AL + +PY+S E + + M + AI AS Sbjct: 507 NVFALEDNRIASQSLRRLGLGVMGLADALIKMGLPYSSEEGRQAVAKIMNAMREEAILAS 566 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 L +ERG VFPI + + P E++ R Sbjct: 567 ERLGEERG-------------VFPIYA-------------QHPEKFP--EIRPR------ 592 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNEL------- 810 RN + +APT T + + GVS I+P + + ++ + G + +++ V ++ Sbjct: 593 RNVAVLTVAPTGTTSMLMGVSSGIEPMF-SPFMWRRIGGQYKALLHPLFVEQMEKYPPTP 651 Query: 811 --KQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 ++ WD + +I ++ H GS+ IE IP +++ + A ++ P+ + Q+ Sbjct: 652 PFEKEGAWDWDKLIEAIQAHHGSVRGIEGIPTEIQAVFEGAHDVPPLDHVRMQGVVQRAF 711 Query: 868 D----QAQSLNLYLDEPSGKK---LDFIYRQAWLMGLK--TTYYLRSR--SATSVEKSTL 916 D A SL+ ++ P+ ++ Y +A+L G K T Y SR SV KS Sbjct: 712 DAFGLAANSLSKTINLPNQATVADVEAAYTEAYLTGCKGITVYRDGSRDLQVLSVSKSEK 771 Query: 917 KGVDGKLNAV--P--VTDPNSSTHSLGIPSS 943 K + + V P + P +T G PS+ Sbjct: 772 KETNESTHTVVQPALLEPPTPATAYAGTPST 802 Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 33/175 (18%) Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 F RVA +A E + E RA EF+ L++S F L +GTRH + +CF+ Sbjct: 30 GMFRRVADWVAGAE-KPEARAYWSEEFFRLMASKRFCPGGRVLAGAGTRHGNVLNCFVQG 88 Query: 376 V----PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 P G+ ++ A++ K GG G + P HG GK+ G Sbjct: 89 ATENDPSSFNGVLEVAKKLALVTKVGGGNGVNLDPY----PPRHGGAGKAAGP------- 137 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD--LRKNTGDDRRRTHDMNTANW 484 +R AYL H DV++F+ +R D + + NW Sbjct: 138 -----------RRTVRGFAYLRADHPDVQDFIQGMMRPPINPDGEK-EPITVRNW 180 >gi|258544276|ref|ZP_05704510.1| ribonucleoside-diphosphate reductase, alpha subunit [Cardiobacterium hominis ATCC 15826] gi|258520514|gb|EEV89373.1| ribonucleoside-diphosphate reductase, alpha subunit [Cardiobacterium hominis ATCC 15826] Length = 555 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 160/578 (27%), Positives = 254/578 (43%), Gaps = 100/578 (17%) Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A F++ ++ ++ S+P N G SCF + + D +Y I E M++K G Sbjct: 54 AERFHHYMARGYYSLSSPIWSNFGLSRGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIGG 113 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G + +R G+ I NGKS G F K+ + ++QG RKG +ID Sbjct: 114 GTSAYFGAIRPRGSDI-SNNGKSDGSFNFSKLFDTIIDVISQGTSRKGQFAG-----YID 167 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 ++ GD N I ++ YG Sbjct: 168 IDH--------GDIDEWLDIHTEGNPIQLMY------------------------YGVCI 195 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577 A+ + D + +V W K+L ETG P++ FKD N P + Sbjct: 196 SNAWLESMKAGDPEKRRV---------WAKVLQRKAETGIPYLFFKDNANAGRPDVYKDR 246 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 V++SNLCTEI L +S EE+ VC L S+NLL D +L + AV + Sbjct: 247 NMTVYASNLCTEIMLPASDEESFVCCLSSMNLLYFDEWKHTDAPELLTQFLDAV--MSEF 304 Query: 636 IDINCHT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 I+ + +++A + HRA+GLG++G+ S L +A IA F SF Sbjct: 305 IEKSAEIPFLDRAHRFAKRHRALGLGVLGWHSYL----------QANRIA-----FDSFA 349 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ + E+ Q LL E + ++ EL + Sbjct: 350 AMQKNNEIFQ------------------------LLQEKTLAASKALAAKFGEPEL---L 382 Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 K G RN+ ++IAPT + + I G VS S++P N +VK T N FLV LK+ Sbjct: 383 KGYGRRNTTLLSIAPTKSSSFILGSVSPSVEPFKSNYHVKDLAKIKTTYKNPFLVELLKE 442 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + + +E + +DGS+ ++ + D+ K+I T EI + +I+ A++RQK+IDQ QS Sbjct: 443 KGIDNEKTWESILLNDGSVQHLAALNDEEKEIFKTFAEISQLAVIQQAAQRQKYIDQGQS 502 Query: 873 LNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 +N+ + D P+ + ++ +Y A +GLK+ YY S SA Sbjct: 503 INVMIHPDTPT-RDINQLYLTAAELGLKSIYYQHSMSA 539 >gi|57641671|ref|YP_184149.1| ribonucleotide-diphosphate reductase subunit alpha [Thermococcus kodakarensis KOD1] gi|57159995|dbj|BAD85925.1| ribonucleoside-diphosphate reductase [Thermococcus kodakarensis KOD1] Length = 1746 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/338 (29%), Positives = 166/338 (49%), Gaps = 22/338 (6%) Query: 596 ETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 E CNL SINL A F FD+D+ A I+ + LDN ID+N + + ++ Sbjct: 1304 EYESCNLASINL-AKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDRN 1362 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 R IG+G+MG AL L IPY S E + ++ E+++F+A SVE A+ERG + Sbjct: 1363 TKLTRRIGVGMMGLADALFKLGIPYNSKEGFDFMRKATEYLTFYAYKRSVEAAKERGPFP 1422 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 ++ + + G P++ LPWDEL + +K G+RN PT Sbjct: 1423 LYEKTRYKDGELPVEG----------FYHREIWNLPWDELVEEIKKYGVRNGMVTTCPPT 1472 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +++ I S I+P + +Y KS G+F V+ ELK+R LW + ++ + + G Sbjct: 1473 GSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLWSDEILKKISDNYG 1532 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 S+ +E IP+D++++ TA +I + I + + Q W+ + S + + ++ + + + Sbjct: 1533 SVQGLEEIPEDMQRVFVTAMDIHWLDHILAQANIQLWLTDSASKTINMPNDATVEDVKAA 1592 Query: 889 YRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGK 922 Y A+ +G K R S + SVE K V K Sbjct: 1593 YLLAYKLGCKGVTVYRDGSLSVQVYSVEGEKKKRVPAK 1630 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 EN M+ ++ GL +++ +R G + T G + G + F+ + + + + QGG R+GA Sbjct: 747 ENGMVFVHNTGL--NFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 804 Query: 449 CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 LE WH D+E+F+ + KNTG + +++ W + F + + + + L +P Sbjct: 805 MGILEVWHPDIEKFIHAKEKNTGTNVLSNFNISVGLW--EDFWEALKEGKRYPLINP 859 Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E++ L++ +FM +TP L NSG LS+CF+ + DD+ I A + AM+ K GG Sbjct: 243 EYFRLMTGQYFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKAGGG 301 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 8/100 (8%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V +R + ++ N + V R + Sbjct: 5 KVMKRDGRIVPFDKERIRWAIQRAMLEV-------GVRDEKLL-NRVVRRVVRRVNELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 I +IE+IQD VE LM++G + + Y+LYR++++++R Sbjct: 57 GQIPNIENIQDIVELELMRAGLFDVAKAYILYRKKKAEIR 96 >gi|15615373|ref|NP_243676.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus halodurans C-125] gi|10175431|dbj|BAB06529.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus halodurans C-125] Length = 852 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 182/690 (26%), Positives = 280/690 (40%), Gaps = 133/690 (19%) Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRH 365 IE P F R A GLA ET +EKR FY L + +F+ + L+ +G + Sbjct: 122 IEKPLEIFYEQIAKRNATGLAAVETTEEKRQQSFERFYEELVNMNFVPAGRVLYGAGAKT 181 Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +C++ V D GI ++ + GG+G + + +R G NGKS G Sbjct: 182 DVTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSG 241 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472 + +L V QGG R+GA L WH DV EF+ L +NT DD Sbjct: 242 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDVLEFIISKMQNPRILRYLLENTDDD 301 Query: 473 --RRRTHD---------------MNTANW--IPDL--FMKRVTQNA--------GWTLFS 503 R+ D N+ IP + F +V + A +T+ + Sbjct: 302 QIRKLVKDKLKFTPLSQLEEAMYQGIVNYKSIPGMGGFDAKVIKEAEEKLRIGGTYTVNN 361 Query: 504 PD----------------EVSDLHDLYGKEFEIAYENYERQ------------------A 529 PD E D D Y F ENY + Sbjct: 362 PDFLTGANISVCLTKEFMEAVDNDDWYALRFP-DVENYTEEEMDIYNREWSNVGDVREWE 420 Query: 530 DRG-EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTE 587 +RG +K +R I A LW + + P I F D N + + G V ++N C E Sbjct: 421 ERGFPVKTYRMIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGE 480 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIE 644 L S VCNL +IN LA AN Q D+ KL T+ VR+ DNVID + +E Sbjct: 481 QPLAPYS----VCNLAAIN-LAEMANKQEKTVDFKKLKQTVEVGVRMQDNVIDATPYFLE 535 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + K R +GLG+MG L Y S E ++ D+ E I+ A S+ELA+E Sbjct: 536 ENTKQAKGERRVGLGVMGLHDLLIYTETVYGSEEGNKLVDQIFETIATTAYRTSIELAKE 595 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNC 763 +G++ G ++ ++R + ++P D +++ V G+RNS+ Sbjct: 596 KGSFPFLVGQTDEE----------TKQLRQRFIGTGYMKKMPED-IRQGVLEYGIRNSHL 644 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 + +APT + + GVS ++P + Y +S G F V + +V E Sbjct: 645 LTVAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAEIVQEY------------- 691 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG- 882 L+ H E + L + + E+ P + Q+W+D SL+ ++ P G Sbjct: 692 LRAHP------EADENHLPEWFISTMELAPEAHADVQCIIQRWVD--SSLSKTVNAPRGY 743 Query: 883 --KKLDFIYRQAWLMGLK--TTYYLRSRSA 908 +++ +Y + + G K T Y SR A Sbjct: 744 TVEQVQAVYERLYRGGAKGGTVYVDGSRDA 773 >gi|14590272|ref|NP_142338.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus horikoshii OT3] gi|3256754|dbj|BAA29437.1| 1291aa long hypothetical ribonucleoside-diphosphate reductase [Pyrococcus horikoshii OT3] Length = 1291 Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 26/291 (8%) Query: 596 ETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 E CNL SINL ++ FD+D+ A I+ + LDN ID+N + + + Sbjct: 860 EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVTKYLDNAIDVNKFPLPEIDHNT 919 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R IG+G+MG AL L IPY S E + + E+++F+A SVE A+ RG + Sbjct: 920 KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKRRGTFPL 979 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++ + + +G P++ LPWD+L + +K G+RN+ PT Sbjct: 980 YEKTEYPKGKLPVEG----------FYHPEIWNLPWDKLVEEIKKYGLRNAMVTTCPPTG 1029 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +++ I S I+P Y +Y KS G+F V+ ELK+R L+ E ++ + + GS Sbjct: 1030 SVSMIADTSSGIEPIYALVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGS 1089 Query: 831 IGNIERIPDDLKKIHATAFEID-----------PMWLIESASRRQKWIDQA 870 I +E IP+D+K++ TA +I MWL +SAS+ I++A Sbjct: 1090 IQGLEEIPEDMKRVFVTALDIHWLDHLLAQASIQMWLTDSASKTINMINEA 1140 Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 32/254 (12%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 EK E++ L+++ FM +TP L NSG LS+CF+ + DD+ I A + A++ K Sbjct: 245 EKEIDEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVALIQK 304 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG G +++ +R G + T G + G + F+ + + + + QGG R+GA LE W Sbjct: 305 AGGGTGINFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIW 364 Query: 456 HIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D+E+F+ + KN G + +++ W + F++ + + + L +P Sbjct: 365 HPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFLEALKEGKKYPLINP---------- 412 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 GE V R++ +L+ ++ M + P + F D N R+ + Sbjct: 413 ---------------RTGE--VVREVDPKSLFEELAYMAWAKADPGVIFFDIINRRNVLK 455 Query: 575 HV--GVVHSSNLCT 586 G + ++N C Sbjct: 456 EAKGGPIRATNPCV 469 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 8/100 (8%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD S+I A+ +A V G ++ +++K + Q + L Sbjct: 12 KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDEKKLDEVVKAIV-QRINELYDGK-- 65 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 I HIE+IQD VE LM++G ++ + Y+LYR++++++R Sbjct: 66 --IPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIR 103 >gi|332800125|ref|YP_004461624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Tepidanaerobacter sp. Re1] gi|332697860|gb|AEE92317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Tepidanaerobacter sp. Re1] Length = 1225 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 135/497 (27%), Positives = 221/497 (44%), Gaps = 79/497 (15%) Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA L H D+ +F+ +KN + + N + I D FM+ + ++ + L Sbjct: 621 RRGANMGILRVDHPDILDFIQCKKND----KEITNFNISVAITDKFMEALKEDGNYDLID 676 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P K K+ A ++ ++ M + G P I F Sbjct: 677 PHTK---------------------------KPTGKLRAREVFDLIVDMAWNNGEPGIVF 709 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYD 619 D N +P +G + S+N C E L CNLGSINL N DY+ Sbjct: 710 IDRMNEDNPTPEIGDIESTNPCGEQPLLPYES----CNLGSINLAKFIKKSGNKNTIDYE 765 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L T+ AVR LD+VID+N + +++ ++ +R IGLG+MGF L L IPY S EA Sbjct: 766 SLKETVHLAVRFLDDVIDVNLYPLKEIEEMTKANRKIGLGVMGFADMLIELGIPYNSDEA 825 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 V+ A+ M FI + +AS ELA+ERG + +++ S++ + Sbjct: 826 VKTAEAIMSFIDSESKNASCELAKERGVFPNWEKSIYKE--------------------- 864 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 K + +RN+ IAPT TI+ I GVS I+P + + + M Sbjct: 865 --------------KGMRIRNATTTTIAPTGTISIIAGVSSGIEPIFALAFERHVMDNQR 910 Query: 800 TV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 V V+ LK++ L+ E ++ + G++ I+ +P ++K++ TA +I P W I+ Sbjct: 911 LVEVHPIFKQVLKEQGLYSEELMQKV-VTQGTLQGIDELPKEIKRVFVTAHDIKPEWHIK 969 Query: 859 SASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915 + QK+ D A S + + + + + + +Y A+ +G K T Y SR + K T Sbjct: 970 MQAAFQKYTDNAVSKTVNFPNSATREDVKTVYMMAYNLGCKGVTIYRDGSRQEQVLNKGT 1029 Query: 916 LKGVDGKLNAVPVTDPN 932 K + P P+ Sbjct: 1030 KKERPARYKIKPRPRPS 1046 Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 6/149 (4%) Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVEFYNLLSSFHFMC 353 +L RY +G IE P+ RV+ +A E + + A +FY+++S F+ Sbjct: 15 VLEKRYLAKDSSGKVIETPETLIERVSNAIAKAELKYVQDKSDDWAKKFYDMISELKFLP 74 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 ++PTL N+G QLS+CF+ V D + GIF +++ +A++ K GG G ++ +R GA Sbjct: 75 NSPTLMNAGRELGQLSACFVLPVEDSMEGIFDSIKSSALIHKSGGGTGFSFSRLRPKGAM 134 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 + T G + G I F+KV N AV QGG Sbjct: 135 VKSTGGVASGPISFMKVFNAATEAVKQGG 163 >gi|310831444|ref|YP_003970087.1| putative ribonucleotide reductase large subunit precursor [Cafeteria roenbergensis virus BV-PW1] gi|309386628|gb|ADO67488.1| putative ribonucleotide reductase large subunit precursor [Cafeteria roenbergensis virus BV-PW1] Length = 1257 Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 177/371 (47%), Gaps = 69/371 (18%) Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +DY+KL + + LD+VID N + +++++SN HR IGLG+ G L LL +PYA Sbjct: 880 YDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLALLRVPYA 939 Query: 676 SPEAVEIADESMEFISFHAISA-------------------------------------- 697 S A++I ++ I A++A Sbjct: 940 SKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEFYDDNFEC 999 Query: 698 ---------------SVEL--AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 S EL Q GAYS+F+GS + +G L + + +N Sbjct: 1000 YPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEG-------KLQYHLWNRTPINI 1052 Query: 741 TSRL---PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ + WD L +K G RNS A+ PTA+ + + G +S +P N+Y + ++G Sbjct: 1053 STLIEGKSWDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRRTLAG 1112 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+N+L + W + + +GSI NI +P+ +K I+ T++E+ ++I Sbjct: 1113 EFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQKYII 1171 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST- 915 + S R +IDQ QS+NLY +P +KL AW GLKT YYLRS+ + + K T Sbjct: 1172 DGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANATKITV 1231 Query: 916 -LKGVDGKLNA 925 L K+N+ Sbjct: 1232 LLNNSQNKINS 1242 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/170 (45%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+ G+RKG+ YLE H D+ +FL+LRKNTG + R D+ A W+ DLFM +V N Sbjct: 627 VHNSGRRKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLFLALWVSDLFMNQVKLNN 686 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W LF PD+ L+D+YG E+E Y Y E K +KI A LW ++T FETG Sbjct: 687 DWYLFCPDKAPGLNDVYGDEYETLYWKY-----VSEEKYNKKIKARKLWEAIMTAQFETG 741 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 P++ +KD N +S Q+++G++ SSNLC EI S S ETA CNL SI L Sbjct: 742 SPYMLYKDNINKKSNQKNIGIIRSSNLCAEIVEYSDSTETAACNLASIAL 791 Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 19/260 (7%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 ++ +T ++Y G++ +L+ + + +YA + R + L +E + T +K Sbjct: 54 IVKKTITSIYPGITTKELDNQSAYQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEK- 112 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + + + Y +IE K R ++D Y RD++F++ G++ Sbjct: 113 MELINDNLHI----YDSEWIEFIKKHRNKLNKIID-----------YNRDYSFDFFGIKT 157 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 + Y ++G IE PQ FMRVA +L ++ ++ YNL+S +F ++PTLFN Sbjct: 158 MERTYITKLDGHLIERPQDVFMRVA---SLVHCGDLQKTIDSYNLMSKKYFTHASPTLFN 214 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +G + L SCFL D + GI + A ++K+ GG+G + VR G+ I TNG Sbjct: 215 AGNKKGNLVSCFLLGTEDSMTGISKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGH 274 Query: 421 SQGVIPFLKVANDTAVAVNQ 440 S G++P L+V N VNQ Sbjct: 275 SDGIVPMLQVYNSICRYVNQ 294 >gi|328951135|ref|YP_004368470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinithermus hydrothermalis DSM 14884] gi|328451459|gb|AEB12360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinithermus hydrothermalis DSM 14884] Length = 955 Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 162/589 (27%), Positives = 260/589 (44%), Gaps = 100/589 (16%) Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428 VPDD+ GI + + AK D++ +R GA I G+ G S G + FL Sbjct: 207 VPDDMGGIIRSAAQAVAQAKEGYEPHVDFSQLRPEGAPIKGSGGTSSGPVSFLLEIFDNF 266 Query: 429 -KVANDTAVA-----------------VNQGGKRKGAVCAYLETWHIDVEEFL---DLRK 467 + AN A A V QGG R+GA A L H D+ +FL DL + Sbjct: 267 LEWANLGAEAAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDLDR 326 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----- 522 + T N + + D F K + +A W + +P EV + Y E Y Sbjct: 327 EAAEGDIST--FNISILVTDTFWKALEADALWPV-TPVEVPGKY--YPYPLEEPYTGTLP 381 Query: 523 ENYERQADRGE-IKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577 E +R+AD I ++ K+ A LW ++ + TG P + F D N S + +G Sbjct: 382 ELPDREADGARAIPLYDGKVPAKWLWHEIAWHAWATGEPGLIFIDRVNDLSALKGLGERY 441 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + S+N C EI L C+LG++NL A+ FD++ +R AVR LDNV+D Sbjct: 442 RIRSTNPCGEIPLTVGEP----CDLGAMNLAAYVREGAFDFEAFRRDVRIAVRFLDNVLD 497 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +E + ++ R +GLG+MG AL + +PY S A E E M + AI A Sbjct: 498 VNKFALEDNRAASQKLRRLGLGVMGLADALIKMGLPYDSEAAREQVYEIMSVLREEAIRA 557 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S LA+ERG VFP+ + +E A +++L R + Sbjct: 558 SEALAEERG-------------VFPLYA--------EEQAY-------FEKLGIRPR--- 586 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL------- 810 RN + +APT T + + GVS I+P Y + +V + ++ + L EL Sbjct: 587 -RNVALLTVAPTGTTSMLMGVSSGIEPVY-SPFVWRRIGSEYKPLLHPLFQELMAQFPPH 644 Query: 811 ---KQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + WD + +I ++ + GS+ +E IP+ ++++ A ++ P+ + Q+ Sbjct: 645 PEYAKDGGWDWDKLIEAIQENHGSVEGLEMIPEAIRRVFRCAHDVAPLDHVRMQGVVQRA 704 Query: 867 IDQ--------AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 D ++++NL +E S ++ Y +A+ G K R S Sbjct: 705 FDAEGYAGNSLSKTINL-PNEASVADVEAAYTEAYRTGCKGITVYRDGS 752 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 40/176 (22%) Query: 319 AFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 F RVA +AL KE E+E+ A FY L+++ F L +GT H + +CF+ Sbjct: 28 GMFRRVANWVALPEKEAERERWAQRFYELMATKRFCPGGRVLAGAGTAHGNVLNCFVQGA 87 Query: 377 ----PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P GI ++ A++ K GG G + P GA Sbjct: 88 TQHPPASFEGIMEVAEKLALVTKVGGGNGVNLDPYVSRGAT------------------- 128 Query: 433 DTAVAVNQGGKRKGAV--CAYLETWHIDVEEFLD--LRKNTGDDRRRTHDMNTANW 484 KR G V AYL H DVE+F+ +R T D + + NW Sbjct: 129 ----------KRTGTVRGWAYLRADHPDVEDFIKGLMRPPTNPDGDK-EQITVRNW 173 >gi|18976812|ref|NP_578169.1| ribonucleotide-diphosphate reductase subunit alpha [Pyrococcus furiosus DSM 3638] gi|1688292|gb|AAB36947.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638] gi|18892410|gb|AAL80564.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638] Length = 1740 Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 146/291 (50%), Gaps = 26/291 (8%) Query: 596 ETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 E CNL SINL ++ FD+D+ A I+ + LDN ID+N + + + Sbjct: 1304 EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNSIDVNKFPLPEIDYNT 1363 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R IG+G+MG AL L IPY S E + + E+++F+A SVE A++RG + Sbjct: 1364 KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPL 1423 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 + + + +G P++ LPWD+L + +K G+RN+ PT Sbjct: 1424 YDKTEYPEGKLPVEG----------FYHPEIWNLPWDKLVEEIKKYGLRNAMVTTCPPTG 1473 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +++ I S I+P Y +Y KS G+F V+ ELK+R L+ E ++ + + GS Sbjct: 1474 SVSMIADTSSGIEPVYALVYKKSVTVGEFYYVDPVFEEELKKRGLYSEELLKKISDNYGS 1533 Query: 831 IGNIERIPDDLKKIHATAFEID-----------PMWLIESASRRQKWIDQA 870 + +E IP+D++++ TA +I MWL +SAS+ I++A Sbjct: 1534 VQGLEEIPEDMQRVFVTALDIHWLDHIIAQASIQMWLTDSASKTINMINEA 1584 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 8/100 (8%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD S+I A+ +A V G ++ +++K++ Q + L Sbjct: 5 KVMKRDGRIVPFDESRIRWAVQRAMWEV---GIRDEKKLDEVVKSIV-QRINELY----D 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 I HIE+IQD VE LM++G ++ + Y+LYR++++++R Sbjct: 57 GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIR 96 Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 34/201 (16%) Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 EN M+ ++ GL +++ +R G + T G + G + F+ + + + + QGG R+GA Sbjct: 747 ENGMIFVHNTGL--NFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 804 Query: 449 CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 LE WH D+E+F+ + KN G + +++ W + F + + + + L +P Sbjct: 805 MGILEIWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGKKYPLINP--- 859 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 GE V +++ L+ ++ M + P + F D Sbjct: 860 ----------------------RTGE--VVKEVDPKTLFEELAYMAWAKADPGVIFFDVI 895 Query: 568 NIRSPQQHV--GVVHSSNLCT 586 N R+ + G + ++N C Sbjct: 896 NRRNVLKKAKGGPIRATNPCV 916 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%) Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 E EK E++ L+++ FM +TP L NSG LS+CF+ + DD+ I A + AM Sbjct: 235 NEYEKEINEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAM 294 Query: 393 LAKYSGG 399 + K GG Sbjct: 295 IQKMGGG 301 >gi|262285103|gb|ACY41131.1| ribonucleotide reductase subunit 1 [Wood mouse herpesvirus] Length = 783 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 173/725 (23%), Positives = 307/725 (42%), Gaps = 102/725 (14%) Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLV--YLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y + F R ++EG+ A + + S ++V Y++ ++ YL YD Y L Sbjct: 57 YLDVFARVLDEGLCAFIGNYSQSLDEMVQRYVSGGFAAVKENG--YLAAARFYDTYVLR- 113 Query: 310 NGSRIEMPQAFFMRVAMGLA------------LKETEKEKRAV---------EFYNLLSS 348 N E FMR+A A LK E ++ V F+ +++S Sbjct: 114 NEDIYESVPHMFMRIATFCAYYCIQNECLFKTLKHMELDRGNVVENAIDLITYFFEMVAS 173 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 C+TP + ++G R LSSCF+ T+ + + E L G+G D T Sbjct: 174 QQVCCATPVMRSAGLRDANLSSCFILAPTLDSEEKTVEAVFSELTKLLACKSGVGMDLT- 232 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 + HG N + LK + N R +V AY+E WH ++ +FL + Sbjct: 233 -----TYSHGKN-----LHALLKAMDGQICYFNDHNIRPVSVAAYMEIWHTNIMDFLTAK 282 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ R ++ IP++F + + + W LF P + L YG F IAY Sbjct: 283 --LPENPERCSNIFQGVCIPEIFFRTYKNDPESNWYLFDPSKAEILTHSYGYMFSIAYAG 340 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS----PQQHVGVVH 580 Q G + I +V +++ + +TG P++ K N ++ Sbjct: 341 LVEQ---GAYEAVVPIKSVMF--ALVSCIIKTGGPYVLNKKAINRHDWHEWSSHQSRAIN 395 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------------QFDYDKLASTIR 626 +NLC E+ + + + CNL +I L ++ +F +KL Sbjct: 396 CANLCAEV-IQYPGDNVSTCNLANICLPKCLEDDKYTSGKSCLLTYEREFSIEKLERATE 454 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 AV +++ I ++A++ + R++G+G+ G L+ + Y + EI D+ Sbjct: 455 AAVFIINACIYGGTLPTQRARRG-QSDRSMGIGVQGLADTFALMGLGYFDGGS-EILDQK 512 Query: 687 M-EFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRDELAMNR 740 + E + F+A++ S+ L + + Y++++ S GV D + RDE Sbjct: 513 IAETLYFNALNTSINLVKIGKGEPYANYEESKHAIGVLHWHDWDMCSPMVYTRDE----- 567 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W++L + + G+ NS +A PTA I G S S P Y ++ K + + Sbjct: 568 -----WEDLARSCEVHGVYNSQFVAYMPTAGTGQITGYSDSFYPFYSSMSSKVSNKEEIL 622 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL---KKIHATAFEIDPMWLI 857 N L++ + R++ ++ + + +I ++P+ L +I +AF+ DP + Sbjct: 623 RPNMTLMSRMSDREV---QLLRECNW------DIAKLPEPLLQKYRIFLSAFDYDPSLYV 673 Query: 858 ESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSR-SATSVE 912 A R +IDQ+QS+ L+L+E S + + W GLKT YY R R +ATS E Sbjct: 674 RRAMLRAPFIDQSQSMTLFLNEDYASSASNIKNLLMYGWECGLKTLMYYCRIRKTATSNE 733 Query: 913 KSTLK 917 ++ Sbjct: 734 FECVR 738 >gi|488079|gb|AAA56995.1| ribonucleoside-diphosphate reductase large subunit [Drosophila melanogaster] Length = 180 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 112/177 (63%), Gaps = 5/177 (2%) Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 Y L NG E PQ MRVA+G+ E AVE YNLLS +F ++PTLF + T Sbjct: 3 YLLKRNGKIAERPQHMLMRVAIGI---HGEDIDAAVETYNLLSERYFTHASPTLFAAATN 59 Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSCFL T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G Sbjct: 60 RPQLSSCFLLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNG 119 Query: 424 VIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 ++P L+V N+ A V+Q GGKR GA YLE WH DV EFL+L+KNTG + R D+ Sbjct: 120 LVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDL 176 >gi|237738296|ref|ZP_04568777.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229420176|gb|EEO35223.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 756 Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 149/578 (25%), Positives = 256/578 (44%), Gaps = 83/578 (14%) Query: 341 EFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 E ++ + F+ + L N G R S+C++ T P+D L IF ++ A Sbjct: 42 ELKEMIINKEFIFAGRILSNRGLAKLGRKITYSNCYVVTPPEDNLESIFDTAKKLARTYS 101 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 Y GG G D + +R GA ++ + + G I F+ + N T + Q G+R GA+ ++ Sbjct: 102 YGGGCGVDISKLRPKGAEVNNSAKYTTGSISFMNLYNMTTDIIGQKGRR-GALMISIDVN 160 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEF+ ++ D + N + + + FMK V ++ Sbjct: 161 HPDVEEFIKVK----SDLNKVQKANISVRVDENFMKAVIEDRN----------------- 199 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSP 572 YE + D GEI + + I A L++++ + P I F D N+ S Sbjct: 200 ------YETVFKVEDTGEI-IKKSIDAKKLFKELAIQNWRFAEPGILFWDRISNWNLLSE 252 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +N C E L + C LGS+ L + N FD++KL S + +V+ L Sbjct: 253 DEEFEYA-GTNPCAEEPLPAGGS----CLLGSLILPSFVGENGFDFEKLKSAVVKSVKAL 307 Query: 633 DNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 ++V+D + H +E+ ++S R IGLG++G L L + Y +PE++E D+ I Sbjct: 308 NDVLDEGLPLHPLEEQRESVRDWRQIGLGVLGVGDLLIKLGLKYGAPESLEFCDKVARTI 367 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+SAS LA+E GA+ +K Q F +++ A T L Sbjct: 368 IDTALSASALLAKEYGAFPRYKEEKILQSPFLLEN-----------ASTETMEL------ 410 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +K G+RNS + IAPT +I + +S I+P++ + + S L Sbjct: 411 --IKEYGLRNSQLLTIAPTGSIGTMLEISTGIEPNFAFSFTRKTES-------------L 455 Query: 811 KQRDLWDEAMISDLKYH--DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 D++ + I K + D ++ + +PD TA ++P I+ QK ID Sbjct: 456 HGEDVYYKVFIPIAKKYMEDNNLTEEDELPD----YFVTAQNLNPYDRIKMQGVWQKRID 511 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + S + L ++ S ++++ +Y + W GLK R+ Sbjct: 512 ASISSTINLVNKVSVEEVEHLYIEGWKNGLKGMTIYRA 549 >gi|291296467|ref|YP_003507865.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent [Meiothermus ruber DSM 1279] gi|290471426|gb|ADD28845.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Meiothermus ruber DSM 1279] Length = 983 Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 150/587 (25%), Positives = 254/587 (43%), Gaps = 94/587 (16%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------ 428 VPDD+ GI A + + LA D++ +R GA I G+ G S G + FL Sbjct: 210 VVPDDMRGIIEAAKSASSLAVKGQEPHVDFSSLRPEGAPIRGSGGTSSGPVSFLVEIFDN 269 Query: 429 ---------KVANDTAV----------AVNQGGKRKGAVCAYLETWHIDVEEFL---DLR 466 + A A V QGG R+GA A + H D+ +FL DL Sbjct: 270 FLEWANLGAEKAGPVATLRYVYAPVLRVVRQGGTRRGAGMATIAIDHPDLLDFLTAKDLD 329 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE--FEIAYEN 524 + + T N + + + F + + + W + P EV + Y + + A + Sbjct: 330 REASEGDIST--FNISILVTEAFWQTLQADGLWAV-EPSEVPGKYYPYPVQGPYTGALPD 386 Query: 525 YERQADRG--EIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578 +A G I V+ K+ A LW ++ + TG P + F D N S +++G Sbjct: 387 LPERAQDGARPIPVYDGKVPAKWLWHEIAWHAWATGEPGLIFVDRINELSALKNLGPRYQ 446 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + S+N C EI L C+LG+INL A+ N F++ + +RTAVR LDNV+D+ Sbjct: 447 IRSTNPCGEIPLTVGEP----CDLGAINLAAYVENGAFNFAEFRKDVRTAVRFLDNVLDV 502 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N +E + ++ T R +GLG+MG L + +PY+S + + M + AI+ S Sbjct: 503 NVFALEDNRVASQTLRRLGLGVMGLADMLIKMGLPYSSEAGRRVVAQVMNAMREEAIAES 562 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 L QERG VFP+ +R ++ L R + Sbjct: 563 ERLGQERG-------------VFPV---------------YEQNRAAFEALGIRPR---- 590 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----- 813 RN + +APT T + + GVS I+P + + ++ + G + + L E+ ++ Sbjct: 591 RNVAVLTVAPTGTTSMLMGVSSGIEPMF-SPFMWRRIGGQYKALLHPLFVEMMEQFPATG 649 Query: 814 -----DLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 W+ EA+I ++ + G++ +E IP + + A ++ P+ + Q Sbjct: 650 PFEKDGAWNWEAIIEAIQANHGTVKGLEGIPAAIALVFEGAHDVPPLDHVRMQGVVQTAF 709 Query: 868 D----QAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907 D A SL+ ++ P+ ++ + Y +A++ G K R S Sbjct: 710 DAEGYAANSLSKTINLPNQATVEDVEAAYTEAYMTGCKGITVYRDGS 756 Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%) Query: 319 AFFMRVAMGLALKE-TEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 F RVA +A E +E++K+ + +FY L++S F L +GT+H + +CF+ Sbjct: 31 GMFRRVATWVASPEKSEQDKQYWSEQFYRLMASKRFCPGGRVLAGAGTQHGNVLNCFVQG 90 Query: 376 V----PDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 P G+ + A++ K GG G + P Sbjct: 91 ATEHDPSSFDGVMEVATKLALVTKVGGGNGVNLDP 125 >gi|134288270|ref|YP_001110433.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia vietnamiensis G4] gi|134132920|gb|ABO59630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia vietnamiensis G4] Length = 830 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 149/556 (26%), Positives = 236/556 (42%), Gaps = 74/556 (13%) Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L +CF+ V D + GI+ AL + A + GG+G D++ +R GA + GT + Sbjct: 87 LINCFVQPVGDSVSEYKNGVPGIYPALLQAAETMRRGGGVGYDFSEIRPAGALVSGTFSR 146 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + F+ V + + V G R+GA L H D+ F+ K+ GD + N Sbjct: 147 ASGPVSFMAVFDRSCSTVESAGARRGAQMGALRVDHPDILTFIHA-KDKGD----LTNFN 201 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D FM+ V ++ +EV H E Y R+ V+RK Sbjct: 202 ISIGVTDAFMRAVERD--------EEVELWHAAEPHPDVKQPETYRREDG---TWVYRKQ 250 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A +W ++ ++ P I F N + V + ++N C E L C Sbjct: 251 RAREIWEAVMLSTYDHAEPGILFISRINEENNLHAVETIRTTNPCGEQPL----PPYGCC 306 Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 +LGS+NL N FD++ +R VR+LD V+D + + + R Sbjct: 307 DLGSVNLTMFVRNAFTDQAYFDFEGFKDLVRVGVRMLDLVLDATFWPLPEQRDEAMAKRR 366 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG +G SAL +L I Y S + +A + E + A AS+ELA+E+GA+ + Sbjct: 367 IGLGFLGLGSALVMLGIRYDSDKGCSMAAQISEVMRDEAYLASIELAKEKGAFPAL---- 422 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773 EV L RLP + ++ +++ G+RNS+ ++IAPT TI A Sbjct: 423 ---------------EVEQYLESGFAKRLP-EHIRAQIREHGIRNSHLLSIAPTGTITLA 466 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S I+P++ Y + D T F V + R L H G GN Sbjct: 467 FADNASNGIEPAFSWTYNRKKRMADGT-HEIFEVADHAYR----------LYRHRG--GN 513 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891 + +P TA E+ M + Q +ID ++++N+ D P + +Y Sbjct: 514 TDSLPGSF----VTALEMSAMDHLRMLQAVQPYIDTSISKTVNVPADYPY-EDFQNLYFA 568 Query: 892 AWLMGLKTTYYLRSRS 907 AW GLK R S Sbjct: 569 AWKAGLKGLATYRPNS 584 >gi|332158632|ref|YP_004423911.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp. NA2] gi|331034095|gb|AEC51907.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp. NA2] Length = 1703 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 152/309 (49%), Gaps = 32/309 (10%) Query: 572 PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAST 624 P H+ + + S+ C E L E CNL SINL ++ FD+D+ A Sbjct: 1245 PNHHMYISNGFMSHNCGEEPLY----EYESCNLASINLAKFVKYDENGKPYFDWDEYAYV 1300 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I+ + LDN ID+N + + + R IG+G+MG AL L IPY S E + Sbjct: 1301 IQKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMR 1360 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E+++F+A SVE A++RG + + + + +G P++ L Sbjct: 1361 KVTEYLTFYAYKYSVEAAKKRGTFPLYDKTEYPEGKLPVEG----------FYHPEIWNL 1410 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 PWD+L + +K G+RN+ PT +++ I S I+P Y +Y KS G+F V+ Sbjct: 1411 PWDKLVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPVYALVYKKSVTVGEFYYVDP 1470 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID-----------P 853 ELK+R L+ E ++ + + GS+ +E IP+D++++ TA +I Sbjct: 1471 VFEEELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIAQASIQ 1530 Query: 854 MWLIESASR 862 MWL +SAS+ Sbjct: 1531 MWLTDSASK 1539 Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 8/105 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD S+I A+ +A V G ++ +++KN+ ++ + Sbjct: 5 KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDERKLDEVVKNIVKR-----INELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 I HIE+IQD VE LM++G ++ + Y+LYR++++++R + Sbjct: 57 GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKR 101 Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 48/86 (55%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 EK E++ L+++ FM +TP L NSG LS+CF+ + DD+ I A + AM+ K Sbjct: 238 EKEIDEYFRLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQK 297 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKS 421 GG G +++ +R G + T G + Sbjct: 298 MGGGTGINFSKLRPEGDLVGTTTGAA 323 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 35/182 (19%) Query: 411 GAHIHGTNG---KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR- 466 G H+ NG + G + F+ + + + + QGG R+GA LE WH D+E+F+ + Sbjct: 747 GVHLLTGNGIYTSNSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKE 806 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KN G + +++ W + F + + + + L +P Sbjct: 807 KNIGTNVLSNFNISVGIW--EDFWEALKEGKKYPLINP---------------------- 842 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNL 584 GE V +++ L+ ++ M + P + F D N R+ + G + ++N Sbjct: 843 ---RTGE--VVKEVDPKTLFEELAYMAWAKADPGVIFFDVINRRNVLKKAKGGPIRATNP 897 Query: 585 CT 586 C Sbjct: 898 CV 899 >gi|301331891|gb|ADK70921.1| U28 [Elephant endotheliotropic herpesvirus 2] Length = 799 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 154/649 (23%), Positives = 276/649 (42%), Gaps = 77/649 (11%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM--LAKYSGG 399 F L++ +CS P + N+G L+SCF+ + + + + + GG Sbjct: 185 FQQLVTQTVGLCS-PVMLNAGISTSNLTSCFIIVRDLECNADVNDVHTSILRQILDCGGG 243 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D + G + + K+ N T N+ +R + ++ W+ ++ Sbjct: 244 IGLDVSHF-----------GSGLDISKYFKMLNSTVDFYNEYLRRPVGLSVSMDIWNKNI 292 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKE 517 + L ++ + + A IPDLF KR ++ G W+LFS + L YGK+ Sbjct: 293 HKLLRMKMPNASEEESCPSLFNAVMIPDLFFKRYEEDPGGKWSLFSGNMAKVLSSTYGKK 352 Query: 518 FEIAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSP 572 FE AY YE ++ ++ +I + +L + TG P+I FKD N + Sbjct: 353 FEAAYVKYE------QLGLYDTQIPIKEILFLLLNAIVNTGTPYILFKDAMNRHYYMEDN 406 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----------------FANNQ 615 ++ ++NLC EI +++ E VCN+ S+NL F N+ Sbjct: 407 TSSSYIIRATNLCAEIVHHANDSEVGVCNICSVNLTNFVKCYVPVDNQSLQEGIDFVVNE 466 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEK------AKKSNHTHRAIGLGLMGFQSALHL 669 D+ K+ S V VI +NC E A+ S +R++G+G+ G S Sbjct: 467 -DHTKMFSLKDLRETVQKVVIMVNCSIAESGSIPMGARLSAGRYRSMGVGVQGLHSTFLK 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGL 728 + + + S A ++ E + + A++ S+ L + + +F S + +G D Sbjct: 526 MKLGFTSAAARDLNRRIFESMYYSAVNTSMTLCKNGLEPFYNFHRSKYSRGWLHYDG--- 582 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 +V+ L + W +L+ + G+ N+ +A+ PT+ + GVS++ P++ N Sbjct: 583 WEDVKLTLPSDW-----WSKLRAGIGKYGLYNAQFIALMPTSGTSQTSGVSEAFYPNFSN 637 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI--HA 846 + K + V N L E + +S++ + + +K+ + Sbjct: 638 FHSKVTTGVEVLVANKDLQKEFSMY----SSYLSNIDWEVSKACETYFTEPEWEKLMRYK 693 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLKT-TYY 902 AFE + LI+ + R ++D +QS++L++ E +IY R A GLKT YY Sbjct: 694 NAFEYEQEALIDMCADRAPFVDHSQSMSLFVREEDITGCRYIYSLLRHAHKKGLKTGMYY 753 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTEC 950 LR R + K V G VPV +S + S+ SCT +D C Sbjct: 754 LRIRKQARLRDLEKKDVFG----VPVC--SSGSRSVAKKDSCTEADNTC 796 >gi|171060924|ref|YP_001793273.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Leptothrix cholodnii SP-6] gi|170778369|gb|ACB36508.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Leptothrix cholodnii SP-6] Length = 1007 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 155/590 (26%), Positives = 240/590 (40%), Gaps = 73/590 (12%) Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 L +CF+ V D + GI+ AL E A + GG+G D++ +R GA + T Sbjct: 106 LINCFVQPVGDSIAEPEEGFPGIYTALTEAAETMRRGGGVGYDFSRIRPYGAWVGSTQSH 165 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + +++V + + V G R+GA L H DVE F+ K+ GD + N Sbjct: 166 ASGPVSYMRVFDRSCETVESAGSRRGAQMGVLRCDHPDVEAFIHA-KDKGD----LKNFN 220 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D+FMK V + L E + G RQ G + V+R + Sbjct: 221 ISVGVTDVFMKAVEADTDVDLVHKAEPGEKQKAAGA----------RQRADG-LWVYRSV 269 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW +++ ++ P + F D N + + + ++N C E L C Sbjct: 270 RARDLWDQIMRSTYDHAEPGVLFLDRINQDNNLSYCETIAATNPCAEQPL----PPYGCC 325 Query: 601 NLGSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 LGS++L HF F+ D A TA R+LDNV+D + ++ R Sbjct: 326 CLGSVDL-THFVQRPFESDASFDDAAFAEVCATATRMLDNVLDATVWPLPAQQQEAANKR 384 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG G AL +L + Y +P A +A E + A AS +LAQERGA+ F Sbjct: 385 RVGLGFTGLGDALIMLGLRYDTPAARAMATHISEVMRDAAYIASSDLAQERGAFPLFNAD 444 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772 L+ G + SRLP +K+ ++ G+RNS+ ++IAPT TI Sbjct: 445 LYLSG------------------NSFASRLP-AAVKEHIRVNGLRNSHLLSIAPTGTISL 485 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A S I+P + Y + D T F V + R L+ +D D + Sbjct: 486 AFADNASNGIEPPFSWTYTRKKREADGT-FKEFAVEDHAWR-LYRHLKGADAPLTDAFVT 543 Query: 833 NIERIPDDLKK-IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 +E + + + A A ID ++++N+ D P + +Y Sbjct: 544 ALEMSAEAHESMVAAVAPCID--------------TSISKTVNVPADYPY-EDFQGLYMA 588 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 AW GLK R S S V P + SLG P Sbjct: 589 AWKSGLKGLATYRPNSVLGSVLSVTPTVPVVAETAATPQPLTVPVSLGTP 638 >gi|14521806|ref|NP_127282.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus abyssi GE5] gi|5459026|emb|CAB50512.1| nrd inteins containing ribonucleotide reductase [Pyrococcus abyssi GE5] Length = 2122 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 32/317 (10%) Query: 572 PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAST 624 P+ H+ + + S+ C E L E CNL SINL ++ FD+D+ A Sbjct: 1665 PEHHMYISNGFMSHNCGEEPLY----EYESCNLASINLAKFVKYDENGKPYFDWDEYAYV 1720 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I+ + LDN ID+N + + + R IG+G+MG AL L IPY S E + Sbjct: 1721 IQKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMR 1780 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E+++F+A S+E A++RG + ++ + + +G P++ L Sbjct: 1781 KVTEYLTFYAYKYSIEAAKKRGTFPLYEKTGYPKGELPVEG----------FYHPEIWNL 1830 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 PWD+L + +K G+RN+ PT +++ I S I+P + +Y KS G+F V+ Sbjct: 1831 PWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDP 1890 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID-----------P 853 ELK+R L+ E ++ + + GS+ +E IP+D++++ TA +I Sbjct: 1891 VFEAELKRRGLYSEELLKKISDNYGSVQGLEEIPEDMRRVFVTALDIHWLDHLLAQANIQ 1950 Query: 854 MWLIESASRRQKWIDQA 870 MWL +SAS+ I++A Sbjct: 1951 MWLTDSASKTINMINEA 1967 Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 8/104 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD S+I A+ +A V G ++ +++KN+ ++ + Sbjct: 5 KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDERKLDEVVKNIVKR-----INELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 I HIE+IQD VE LM++G ++ + Y+LYR++++++R + Sbjct: 57 GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKK 100 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 EK E++ L+++ FM +TP L NSG LS+CF+ + DD+ I A + AM+ K Sbjct: 238 EKEIEEYFKLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQK 297 Query: 396 YSGG 399 GG Sbjct: 298 MGGG 301 Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 32/175 (18%) Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDR 473 +G + G + F+ + + + + QGG R+GA LE WH D+E+F+ + KN G + Sbjct: 1154 NGIYTSNSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNV 1213 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 +++ W + F + + + + L +P GE Sbjct: 1214 LSNFNISVGIW--EDFWEALKEGKKYPLINP-------------------------RTGE 1246 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCT 586 V ++I L+ ++ M + P + F D N R+ + G + ++N C Sbjct: 1247 --VVKEIDPKTLFEELAYMAWAKADPGVIFFDIINRRNVLKEAKGGPIRATNPCV 1299 >gi|71403769|ref|XP_804651.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi strain CL Brener] gi|70867734|gb|EAN82800.1| ribonucleoside-diphosphate reductase large chain, putative [Trypanosoma cruzi] Length = 236 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 134/220 (60%), Gaps = 15/220 (6%) Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y+ F GS QG+ D L E + R+ R WD LKKR+ GMRNS +A Sbjct: 2 GPYARFAGSPASQGLLHFD----LWEQKP-----RSGRWYWDALKKRMMKSGMRNSLLLA 52 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PTA+ + I G ++ +P N+YV+ +SG+F VVN +LV +L +R LW+E M + + Sbjct: 53 PMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQII 112 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 ++GS+ NI IP+DLK+++ +EI LIE A R K+IDQ+QSLNL+L+ P+ +L Sbjct: 113 AYNGSVQNIRGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQL 172 Query: 886 DFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGV 919 ++ AW GLKT YYLRS+ A +V+ +TLKG+ Sbjct: 173 TSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTLKGL 212 >gi|304407150|ref|ZP_07388804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus curdlanolyticus YK9] gi|304344137|gb|EFM09977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus curdlanolyticus YK9] Length = 875 Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 119/488 (24%), Positives = 221/488 (45%), Gaps = 38/488 (7%) Query: 317 PQAFFMRVAMGLA-LKETEKEKRAVE-FYNLLSSFHFM-CSTPTLFNSGTRHPQLSSCFL 373 P+ + R+A +A +++ EK K E F +L + + + L +C++ Sbjct: 88 PEEMWDRLAGAMASVEKEEKRKEWTERFRYILDDWKLVPGGRIAAGAGASEELTLFNCYV 147 Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P D GI L E + GG+G + + +R A + G NG S G + + + + Sbjct: 148 IPSPKDSRGGIMETLTEMTEIMARGGGVGINLSSLRPRRAIVAGVNGSSSGAVSWGGLFS 207 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T + QGG R+GA+ + WH D+ +F+ +++ G + + N + + + FMK Sbjct: 208 YTTGLIEQGGSRRGALMLMINDWHPDLLDFITVKQTMG----QVTNANLSVCVSNGFMKA 263 Query: 493 VTQNAGWTLFSPDEVSDLHD-LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 V ++ W L PD + +D L+ + E + +++ + ++ + A +W ++ Sbjct: 264 VKEDLDWELVFPDTKATGYDQLWDGDLE------KWRSNGHPVIPYKTVRARDVWHTIIE 317 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 +++ P + F + N S + + +N C E L + VCNL +INL + Sbjct: 318 SAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAINLSKFY 373 Query: 612 --ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+++L R +VR LDNVID + + + + R +GLG MG + Sbjct: 374 DEGKDDVDWNELGRVTRWSVRFLDNVIDKTPYHFPENEANQQNERRVGLGTMGLAELMIK 433 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L I Y SPE++ D+ FI+ + AS E+A E+G++ +F+ + Q F + + Sbjct: 434 LGIRYGSPESLSFLDKLYGFIARESYLASSEIASEKGSFPAFEAEPYLQSGFMQNMVEEY 493 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 EV D + + G+RN + APT + + G S I+P + Sbjct: 494 PEVGDAIMKS-----------------GVRNVTVLTQAPTGSTGTMVGTSTGIEPYFAFE 536 Query: 790 YVKSNMSG 797 Y + + G Sbjct: 537 YFRQSRLG 544 >gi|315231895|ref|YP_004072331.1| ribonucleotide reductase of class II, coenzyme B12-dependent [Thermococcus barophilus MP] gi|315184923|gb|ADT85108.1| ribonucleotide reductase of class II, coenzyme B12-dependent [Thermococcus barophilus MP] Length = 1042 Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 174/358 (48%), Gaps = 25/358 (6%) Query: 579 VHSSNLCTEITLNSSSE---ETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAV 629 VH + I+ N E E CNL SINL A F FD+D+ A I+ Sbjct: 601 VHEYVANSIISRNCGEEPLYEYESCNLASINL-AKFVKYDDEGKPYFDWDEYAYVIQKVA 659 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + LDN ID+N + + + R IG+G+MG AL L IPY S E + ++ E+ Sbjct: 660 KYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSKEGFDFMRKATEY 719 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 ++F+A SVE A++RG + + S + +G P++ LPWDEL Sbjct: 720 LTFYAYKYSVEAAKKRGTFPLYDKSDYPEGKLPVEG----------FYHREIWNLPWDEL 769 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + +K G+RN+ PT +++ I S I+P + +Y KS G+F V+ E Sbjct: 770 AEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAE 829 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 LK+R L+ + +++ + + GS+ +E IP+D++++ TA ++ + I + + Q W+ Sbjct: 830 LKKRGLYSDELLAKISNNYGSVQGLEEIPEDMQRVFVTAMDVHWLDHILAQASIQLWLTD 889 Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGK 922 + S + + ++ + + + Y A+ +G K R S + SVE K V K Sbjct: 890 SASKTINMPNDATVEDVKAAYLLAYKLGCKGVTVYRDGSLSVQVYSVEGEKKKRVPAK 947 Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 30/237 (12%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 EK E++ L+++ FM +TP L N+G LS+CF+ + DD+ I A + AM+ K Sbjct: 238 EKEIEEYFRLMTNQIFMPNTPALINAGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQK 297 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG G +++ +R G + T G + G + F+ + + + + QGG R+GA LE W Sbjct: 298 MGGGTGVNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVW 357 Query: 456 HIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D+E+F+ + KN G + +++ W + F + + + + L +P Sbjct: 358 HPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGRKYPLINP---------- 405 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 R KV R++ AL+ ++ M + P + F D N R+ Sbjct: 406 ----------------RTGKKV-REVDPKALFEELAYMAWAKADPGVVFFDVINRRN 445 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 8/100 (8%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A V +R + ++ + + V R+ Sbjct: 5 KVMKRDGRIVPFDEGRIRWAIQRAMWEV-------GVRDEKLLDKVVKDVVGRI-NELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129 I HIE+IQD VE LM++G + + Y+LYR++++++R Sbjct: 57 GKIPHIENIQDIVELELMRNGLFDVAKAYILYRKKKAEIR 96 >gi|196020388|ref|XP_002119099.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens] gi|190576963|gb|EDV18415.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens] Length = 300 Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 105/327 (32%), Positives = 153/327 (46%), Gaps = 42/327 (12%) Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 +L ++ D Y N + Y RD G +L DRY L E Q F+RVA Sbjct: 5 VLEKNNQDSTFKYEVN-VDYSRDQNLSESGKAMLLDRYLLEN-----ESYQDLFVRVATH 58 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 A + + A Y+ +S F FM +TP L N G + SCFL V D L I Sbjct: 59 YA----DNKNHAQRLYDYMSKFWFMPATPVLSNGGAKRGLPISCFLNEVGDGLKEIVEIW 114 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 EN LA GG+G W VR +G + +G++ G++PFL V + +A++QG R+G+ Sbjct: 115 NENVWLASRGGGIGTFWGNVRSIGEKV-ANSGRTSGIVPFLSVQDRLTLAISQGSLRRGS 173 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 YL H ++EEF +LR+ TG D RRT +++ I D FM V + W L SP + Sbjct: 174 AAVYLPVSHPEIEEFTELRRPTGGDPNRRTLNLHHGVVITDKFMYAVENDLPWELVSPKD 233 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 S + + A +W ++L ETG P++ F D Sbjct: 234 NS---------------------------IISIVKARDIWIRILLARIETGEPYLLFIDN 266 Query: 567 CNIRSP---QQHVGVVHSSNLCTEITL 590 N +P ++H + +SNLC+EITL Sbjct: 267 VNKNAPDSYKRHNMEIKTSNLCSEITL 293 >gi|119485473|ref|ZP_01619801.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106] gi|119457229|gb|EAW38355.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106] Length = 405 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 202/456 (44%), Gaps = 72/456 (15%) Query: 490 MKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 M+RV WTL P EV +L +L+G++FE AY+ E+ D+ + +++KI+A Sbjct: 1 MRRVIAKEEWTLVDPFEVRTKLGIELAELWGEKFEFAYQEIEQSLDK-TLTLYKKINARE 59 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLG 603 L++ M+ ETG P++ FKD N +P H G + NLC E N + +E CNL Sbjct: 60 LFKTMMRSQVETGMPYLWFKDTSNRANPNSHEGYIPGGNLCQESWSNVAPGKEAHTCNLN 119 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+NL + +LA AVR+LDN I++ C E +K N +R IG+G MG Sbjct: 120 SLNLANL------EDGELAEICEIAVRLLDNTIELTCPPFEDSKVHNIKYRTIGVGAMGL 173 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y + + E + ++ S+ELA+ERG+Y +F GS W QG Sbjct: 174 ADWLAKNKRSYRDLDTI---SHLFEDLGYYCTKTSMELAKERGSYPAFAGSSWSQGKL-- 228 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 IG A+ + N S+ W +L ++ G+RNS+ AIAP + + + G + SI Sbjct: 229 --IG--AKPVEWFLENAHSKERWQQLSLDIQKYGIRNSHITAIAPNTSSSLVQGCTASIL 284 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P Y + G + F+ RD S Y + N + + Sbjct: 285 PCYSRFFYDKWAKGTVPIAPPFI------RD-------SFWFYPENKTLNQQTV------ 325 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYR 890 +++ + QKWID S+ L + DEP K + Sbjct: 326 -------------VKAVATIQKWIDTGISMELIFNLNQGVYFPDEPERSIKAKDIFDTLV 372 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 AW G K YY+R +V++ + K D A Sbjct: 373 MAWQEGCKAIYYIR-----TVQRDSFKEADETCTAC 403 >gi|37651591|ref|NP_932465.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t] gi|34732891|gb|AAQ81429.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t] Length = 570 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 165/609 (27%), Positives = 261/609 (42%), Gaps = 118/609 (19%) Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E + F RVA LA + E +++LL S +TP N+GT SC + Sbjct: 44 ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAGS 102 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D + + E AMLAK G + +R G+ I ++ K+ G++P +T Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G+R G Y++ H D F +L+ Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 G+ L +P G FE E+YE+ +K R +A W +++ M Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEK------LKA-RDPEYMARWNELMYMRA 233 Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 TG ++ N +PQ ++ G+ + SS LCTEI L S T C L S+N+ Sbjct: 234 RTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEIALPSDDMHTFTCILSSLNVSL-- 291 Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVI--------DINCHTIEKAKKSNHTHRAIGLGLMG 662 +D++ A I+ +VR LD+V +++ T+ KA + RA+GLG +G Sbjct: 292 ------WDEITADDIKWSVRFLDSVCSEFLAKAKELSYDTLHKAIRFTEKARALGLGTLG 345 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 F + L + I + S A + ++ I A S ELA+E G KG+ Sbjct: 346 FHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRELAEEYGEPEWCKGT-------- 397 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781 GMRN+ + IAP + A + G VSQ Sbjct: 398 ----------------------------------GMRNATLITIAPNMSSALLAGGVSQG 423 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLK-YHDGSIGNIERIP 838 ++P N +++ + +GDF N L LK R D + ++ D+ YH+GS+ +++ + Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEIQELMEDIATYHNGSVQHLDILT 483 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG-- 896 D K + TA+EID +I AS RQ+ IDQAQS+NL+ + + +A++ Sbjct: 484 DHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFSADEKESVIASVHRAFMDDPR 543 Query: 897 LKTTYYLRS 905 LK+ YYLRS Sbjct: 544 LKSLYYLRS 552 >gi|241764581|ref|ZP_04762598.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax delafieldii 2AN] gi|241365984|gb|EER60605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax delafieldii 2AN] Length = 829 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 161/635 (25%), Positives = 272/635 (42%), Gaps = 85/635 (13%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF--MC 353 + L +L ++Y L + +E + RVA LA E K ++ E L++ H + Sbjct: 34 ISLDVLREKY-LKPGETNVE---DLYRRVAHALASVEAPKLRQKYEEL-FLANLHAGAIG 88 Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDW 404 + + +GT L +CF+ V D GI+ AL+E A + GG+G D+ Sbjct: 89 AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDEGFPGIYEALREAAETMRRGGGVGYDF 148 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + T + G ++ V + + V G R+GA L H DV+EF+ Sbjct: 149 SRIRPKGAQVKATASVASGPCSYMNVFDQSCSTVESAGARRGAQMGVLRIDHPDVQEFIT 208 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + + D F++ V + W L +H +A Sbjct: 209 AKRTPG----RWNNFNVSVGVSDAFIEAVQHDRPWEL--------VHRARPGTAAMAQGA 256 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++R + V+ + A ALW ++ ++ P I F D N + + + ++N Sbjct: 257 HQRADGQ---WVYATVQARALWDIIMKSAYDFAEPGILFLDHINEDNNLNYCEAIAATNP 313 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS--------TIRTAVRVLDNVI 636 C E L S C+LG + +L F + F +D L S + VR LDNV+ Sbjct: 314 CGEQPLPS----YGCCDLGPV-ILTRFVRHPFGFDGLPSFDFEAFEKVVALQVRALDNVL 368 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+ + + + R IG+G G + L +L + Y E +A E + A Sbjct: 369 DVTFWPLPQQRDEAMAKRRIGVGFTGMGNTLAMLCLRYDMQEGRAMAARIAEAMRDAAYR 428 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ASVELA+E+GA+ F+ P + G A SRLP + +K+ ++ Sbjct: 429 ASVELAREKGAFPKFEAE-------PYLAAGTFA-----------SRLP-ESIKEAIRAN 469 Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS+ ++IAPT T+ A S I+P + +Y + D + + + V + R Sbjct: 470 GIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWMYKRKKREADGS-TSEYSVEDHAWR- 527 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872 L+ E G++ +PD +A E+ I Q ++D A ++ Sbjct: 528 LYRELG-----------GDVNALPD----YFISALEMPAEGHIAMMEAVQPFVDTAISKT 572 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +N+ D P D +Y QAW LK R S Sbjct: 573 VNIPADYPYEDFKD-LYLQAWRARLKGLATYRPNS 606 >gi|319651515|ref|ZP_08005643.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2] gi|317396830|gb|EFV77540.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2] Length = 853 Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 177/687 (25%), Positives = 279/687 (40%), Gaps = 127/687 (18%) Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--T 363 IE P F R A GLA E +EKR +FY L + +F+ + L+ +G T Sbjct: 123 IEKPLEIFYEQIAKRNATGLASVEKTEEKRKEWFEKFYQELKNLNFIPAGRVLYGAGADT 182 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + + V D GI ++ + GG+G + + +R G NGKS G Sbjct: 183 DVTYFNCYVMPFVQDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSSG 242 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472 + +L V QGG R+GA L WH D+ EF+ L +NT DD Sbjct: 243 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNPRILRFLLENTNDD 302 Query: 473 RRRTHDMNTANWIP----DLFMKRVTQN----AGWTLFSPDEVSDLHD------------ 512 + + + P ++ M + N G+ FS + D + Sbjct: 303 TIKKYAKEKLKFTPFTEQEIAMYQGIINYKSIPGYGGFSDKIIQDAEEKLATGGTYSVHN 362 Query: 513 ---LYG--------KEFEIAYEN---YERQ--------ADR-----------GEIKVFRK 539 L G KEF A EN YE + AD G+++ + K Sbjct: 363 SEFLTGANISVCLTKEFMDAVENDAEYELRFPDVESYDADTMKTYNEEWHKVGDVREWGK 422 Query: 540 ----------ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEI 588 I A LW + + P I F D N + Q G V ++N C E Sbjct: 423 LGYKVRVHRKIKAKELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGEQ 482 Query: 589 TLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 L S VCNL ++NL +A N +++KL T+ VR+ DNVID + +E+ Sbjct: 483 PLAPYS----VCNLAAVNLAEMADKENKTVNFEKLKRTVEVGVRMQDNVIDATPYFLEEN 538 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 KK R +GLG+MG L Y S E + D+ E I+ A ASVELA+E+G Sbjct: 539 KKQALGERRVGLGVMGLHDLLIYCETEYGSEEGNVLIDKVFETIAATAYRASVELAEEKG 598 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 ++ G + L + E ++P D +++ + G+RNS+ + + Sbjct: 599 SFPFLTGE-------NAEETNRLRKAFTETGF--MQKMPED-IRESILQSGIRNSHLLTV 648 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT + + GVS ++P + Y +S G F V + +V E R Sbjct: 649 APTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDR------------- 695 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---K 883 N + P++L + A ++ P + Q+WID S++ ++ P G + Sbjct: 696 ------NPDADPNNLPEWFVAAMDLAPEAHADVQCVIQRWID--SSISKTVNAPKGYSVE 747 Query: 884 KLDFIYRQAWLMGLK--TTYYLRSRSA 908 +++ +Y + + G K T Y SR + Sbjct: 748 QVEQVYERLYRGGAKGGTVYVDGSRDS 774 >gi|308516939|emb|CBW47044.1| hypothetical host-like ribonucleoside diphosphate reductase [Roseovarius sp. 217 phage 1] Length = 776 Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 150/593 (25%), Positives = 253/593 (42%), Gaps = 78/593 (13%) Query: 330 LKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFG 385 L E+ A+E F+ L F + + +GT R+ L +C+ + T+PD L GIF Sbjct: 51 LHNNHAEREALEQRFFQALYDFKLLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFD 110 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 L+E A+ + GG+G D++ +R GA + G S G + F+ V + + G R+ Sbjct: 111 MLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRR 170 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ A + H D+ EF+ ++ D R + N + D FM+ V + W L Sbjct: 171 GAMMATMRCDHPDIMEFVHAKQ----DPLRLRNFNVSVLCTDEFMEAVANDEEWDLV--- 223 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 F V+ I AV LW +L ++ P + F D Sbjct: 224 ------------FNGV--------------VYETIRAVELWNTILQNTYDYAEPGVIFID 257 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FA--NNQFDYD--K 620 N + + + ++N C E L C LGS+NL H FA Q D D + Sbjct: 258 RINKENNLWFLETIAATNPCGEQPL----PPYGACLLGSVNLAKHVFAPFTEQADVDMAE 313 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++RT VR+LD+V+D + + + +K R GLG+ G L + Y S +AV Sbjct: 314 LEKSVRTGVRLLDSVVDTSKFPLPEQEKEAKEKRRAGLGVTGLADLLFMTGYRYGSVQAV 373 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + M I+ A S+E+A+E G + + E R + + Sbjct: 374 DCTETIMMNIAIWAYEESIEMAKEMGPAPCLQTT----------------EARMKFIQSG 417 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGD 798 R+P + ++ + G+RN++ +++APT TI+ G VS +P + + + + D Sbjct: 418 FMQRMP-EYIRDDIIQWGIRNTHLLSVAPTGTISMYAGNVSSGGEPIFAPSFQRKVTNDD 476 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 T + ++D A++ K+ G + D+ ATA +++P I Sbjct: 477 GT---------KRTETVYDYAILLFEKHFGEDTGAAQEWMDNYL---ATAQDLEPQDHIV 524 Query: 859 SASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + QKW+D + S + L E S + +Y A+ G K R T Sbjct: 525 MQAVLQKWVDSSISKTVNLPENISFEDFKAVYDMAYETGCKGCTTYRPNDVTG 577 >gi|13095638|ref|NP_076553.1| ribonucleotide reductase large subunit [Bovine herpesvirus 4] gi|12802588|gb|AAK07980.1|AF318573_60 ribonucleotide reductase large subunit [Bovine herpesvirus 4] Length = 793 Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 155/653 (23%), Positives = 275/653 (42%), Gaps = 78/653 (11%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F+ ++S C+TP L ++G L+SCF+ V ++Y E + + L Sbjct: 179 FFGFIASQVVCCATPVLRSAGVESENLASCFI--VSPEMYS------ETSTITSLYSRLF 230 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + G+G I + + LK+ N N R +V Y+E WH+ + E Sbjct: 231 PLLSSKSGVGMDITSFANDQKNIHSCLKLINAHVEFFNDHNIRPVSVATYIELWHVQIFE 290 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFE 519 FL + D R + A +P LF K ++ W LF P +V L LYGKEFE Sbjct: 291 FLYAKVPENSD--RCASIFQAVCVPSLFFKLYEKDPMGSWHLFDPSDVPGLKLLYGKEFE 348 Query: 520 IAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577 Y + ++F +++ ++ ++ + +TG P++ K+ N + G Sbjct: 349 DEYHKLVQS------QLFVKEVPLKSIMFSLINTIIKTGSPYVILKEAINQHHWCETQGE 402 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------------ANNQFDYDKLAS 623 ++++NLC EI + S A C+L +I L F + L Sbjct: 403 AINAANLCAEI-VQHSGRHVATCSLANICLPKCLEGLDFLTQCHGGTPVKKTFSFQLLTR 461 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + AV V++ I + H + K RA+G+G+ G L Y E+ EI Sbjct: 462 AVEAAVFVINAAI-VGGHCVLDEVKRGQGERAMGIGVQGLADVFAELGYGYLDKES-EIL 519 Query: 684 DESM-EFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 D + E + + A+ S ++ + G + F S +G+F E+ D + +++ Sbjct: 520 DRHIFECMYYSAVKTSHDIVRIGGGVPFEGFDRSKLKRGLFHWQE----WEIEDPMLISQ 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W L K + G+ NS +A+ PTA + I G S++ P + N+ K + + Sbjct: 576 DM---WLNLGKSISQFGIFNSQFIALMPTAGTSQITGHSEAFYPFFANMSSKVSNKEEIM 632 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK---IHATAFEIDPMWLI 857 N + +++RDL +++++ G++ R P+ L K I AF+ P + Sbjct: 633 KPNITFLKSVRKRDL------DTVRFYN---GDVSRFPEPLAKRYQIFLNAFDYCPFEQM 683 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTT-YYLRSRSATSVEK 913 + A +R ++DQ+QS +L+L E + K ++ + +GLKT YY R + +V Sbjct: 684 KRARQRAPFVDQSQSFSLFLKEENVKSASYLKNLLLYGYNLGLKTIMYYCRIQKEFTVSD 743 Query: 914 STLKGVDGKLNAVP------------VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + P +PN T + P S +C+ CQ Sbjct: 744 FQCLDTGCQFDEDPDNQNKCEETHNKSQEPNYKTEA---PCQLDSSPQCDCCQ 793 >gi|294083957|ref|YP_003550714.1| putative ribonucleoside-diphosphate reductase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663529|gb|ADE38630.1| putative ribonucleoside-diphosphate reductase [Candidatus Puniceispirillum marinum IMCC1322] Length = 573 Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 134/571 (23%), Positives = 236/571 (41%), Gaps = 92/571 (16%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398 +F ++L + F+ + G R +CF++ V D + I E A + G Sbjct: 52 DFKDVLRNMRFLPAGRVQNAMGAARQTTAFNCFVSGVIGDSMESIMQRATEAAETMRRGG 111 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G D++ +R G I KS G + F+ + + + G R+GA L H D Sbjct: 112 GIGYDFSRLRPRGDRIKSLESKSSGPVSFMGIFDSVCQTIASSGHRRGAQMGVLRIDHPD 171 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 +E+FL + N+ + N + + D FM + Q GK F Sbjct: 172 IEQFLTAKHNS----DKLTGFNISIGVTDEFMMHLQQ-------------------GKPF 208 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 + Y+ + ++++ ALW ++ ++ P + F D N + + Sbjct: 209 PLKYDG----------RTYKEVDPEALWDMVMRSTWDWAEPGVLFIDQINRLNNLWYCET 258 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVI 636 + ++N C E L + C LGS NL+ + F+ D+ + IRT VR +DNVI Sbjct: 259 IEATNPCGEQPLPA----YGACLLGSFNLVKYVNMEEKMFNLDQFEADIRTVVRAMDNVI 314 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + + + + R +GLG+ +A +L +PY SPE ++ + +++ + +A Sbjct: 315 DRTIYPLPEQEAEAKAKRRMGLGVTALANAGEMLGLPYGSPEFMDFTETTLKALRDYAYD 374 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA E+GA+ F + QG F +LP D +++++ Sbjct: 375 TSADLAHEKGAFPLFDPVKYPQGEF-------------------IQQLPKD-IQEKIGAY 414 Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS+ +IAPT TI+ VS I+P + Y ++ ++Q D Sbjct: 415 GIRNSHLTSIAPTGTISLTADNVSSGIEPPFSLYYDRT----------------IQQFDG 458 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + D + G G TA EI + + Q+++D A S Sbjct: 459 HQIERVEDYAFTQGVSGR-------------TANEISAEEHLSVLAMAQQYVDSACSKTC 505 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + D+ S +Y +AWL G K R+ Sbjct: 506 NVGDDVSYDDFKNLYMKAWLSGCKGITTFRA 536 >gi|123845657|sp|Q3KSU5|RIR1_EBVG RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase 140 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|64173255|gb|AAY41105.1| unknown [Human herpesvirus 4] Length = 826 Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 182/728 (25%), Positives = 294/728 (40%), Gaps = 135/728 (18%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325 +H ++ + A YER + YL YD Y + E Q F+MR+A Sbjct: 68 MHRDELETRVSAFAQSPAYERIVSSGYLSALRYYDTYLYVGRSGKQESVQHFYMRLAGFC 127 Query: 326 -------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 GL A E E + ++Y L+S CSTP + +G + L+SC Sbjct: 128 ASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPFMRFAGVENSTLASC 187 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI----------------H 415 LTT PD L ++W + L H+ Sbjct: 188 ILTT-PD---------------------LSSEWDVTQALYRHLGRYLFQRAGVGVGVTGA 225 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 G +GK ++ +++ N N G KR +V AY+E WH + +FL+ + ++ R Sbjct: 226 GQDGKHISLL--MRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFLETK--LPENHER 281 Query: 476 THDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + T ++P+LF K R T + W LF P + DL LYG+EFE Y R G Sbjct: 282 CPGIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFE---REYYRLVTAG- 337 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNS 592 K ++S +L ++ + G P+I K+ CN + G ++++NLC E+ L Sbjct: 338 -KFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEV-LQP 395 Query: 593 SSEETAVCNLGSINL-----------LAHFANNQFDYDKLA------------------- 622 S + A CNL +I L A A+ Q D LA Sbjct: 396 SRKSVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAIGDGFS 455 Query: 623 -STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA-IGLGLMGFQSALHLLHIPYASPEAV 680 + +R A + V + C ++ + + A +GLG+ G L Y P + Sbjct: 456 LARLRDATQCATFV--VACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPPSR 513 Query: 681 EIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPI-DSIGLLAEVRDELAM 738 + E E + F A+ S + R + FK S + G F D G + E+ Sbjct: 514 SLNKEIFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTDLSIPREI-- 571 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W L +R+ G+ NS +A+ PT+ A + G S + P Y N K + Sbjct: 572 -------WSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEE 624 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMW 855 N R W + D + + G + +P+ L++ + TAF+ + Sbjct: 625 ALRPN---------RSFWRHVRLDDREALNLVGGRVSCLPEALRQRYLRFQTAFDYNQED 675 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKTT-YYLRSRSATSV 911 LI+ + R ++DQ+QS +L+L E + L + +++ +GLKT YY R + Sbjct: 676 LIQMSRDRAPFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCR------I 729 Query: 912 EKSTLKGV 919 EK+ GV Sbjct: 730 EKAADLGV 737 >gi|82503213|ref|YP_401655.1| BORF2 [Human herpesvirus 4] gi|139424487|ref|YP_001129452.1| BORF2 [Human herpesvirus 4 type 2] gi|132602|sp|P03190|RIR1_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase 140 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|238055302|sp|P0C702|RIR1_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase 140 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|1334856|emb|CAA24842.1| unnamed protein product [Human herpesvirus 4] gi|23893601|emb|CAD53405.1| ribonucleoside-diphosphate reductase large chain [Human herpesvirus 4] gi|82703963|gb|ABB89232.1| BORF2 [Human herpesvirus 4] Length = 826 Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 182/728 (25%), Positives = 294/728 (40%), Gaps = 135/728 (18%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325 +H ++ + A YER + YL YD Y + E Q F+MR+A Sbjct: 68 MHRDELETRVSAFAQSPAYERIVSSGYLSALRYYDTYLYVGRSGKQESVQHFYMRLAGFC 127 Query: 326 -------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 GL A E E + ++Y L+S CSTP + +G + L+SC Sbjct: 128 ASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPFMRFAGVENSTLASC 187 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI----------------H 415 LTT PD L ++W + L H+ Sbjct: 188 ILTT-PD---------------------LSSEWDVTQALYRHLGRYLFQRAGVGVGVTGA 225 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 G +GK ++ +++ N N G KR +V AY+E WH + +FL+ + ++ R Sbjct: 226 GQDGKHISLL--MRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFLETK--LPENHER 281 Query: 476 THDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + T ++P+LF K R T + W LF P + DL LYG+EFE Y R G Sbjct: 282 CPGIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFE---REYYRLVTAG- 337 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNS 592 K ++S +L ++ + G P+I K+ CN + G ++++NLC E+ L Sbjct: 338 -KFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEV-LQP 395 Query: 593 SSEETAVCNLGSINL-----------LAHFANNQFDYDKLA------------------- 622 S + A CNL +I L A A+ Q D LA Sbjct: 396 SRKSVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAVGDGFS 455 Query: 623 -STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA-IGLGLMGFQSALHLLHIPYASPEAV 680 + +R A + V + C ++ + + A +GLG+ G L Y P + Sbjct: 456 LARLRDATQCATFV--VACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPPSR 513 Query: 681 EIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPI-DSIGLLAEVRDELAM 738 + E E + F A+ S + R + FK S + G F D G + E+ Sbjct: 514 SLNKEIFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTDLSIPREI-- 571 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W L +R+ G+ NS +A+ PT+ A + G S + P Y N K + Sbjct: 572 -------WSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEE 624 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMW 855 N R W + D + + G + +P+ L++ + TAF+ + Sbjct: 625 ALRPN---------RSFWRHVRLDDREALNLVGGRVSCLPEALRQRYLRFQTAFDYNQED 675 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKTT-YYLRSRSATSV 911 LI+ + R ++DQ+QS +L+L E + L + +++ +GLKT YY R + Sbjct: 676 LIQMSRDRAPFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCR------I 729 Query: 912 EKSTLKGV 919 EK+ GV Sbjct: 730 EKAADLGV 737 >gi|109290087|ref|YP_656336.1| ribonucleotide reductase A subunit [Aeromonas phage 25] gi|104345760|gb|ABF72660.1| ribonucleotide reductase A subunit [Aeromonas phage 25] Length = 570 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 167/611 (27%), Positives = 256/611 (41%), Gaps = 122/611 (19%) Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E + F RVA LA + E +++LL S +TP N+GT SC + Sbjct: 44 ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAGS 102 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D + + E AMLAK G + +R G+ I ++ K+ G++P +T Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G+R G Y++ H D F +L+ Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 G+ L +P G FE E+YE+ + R +A W ++L M Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEKL-------LARDPEYMARWNELLYMRA 233 Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 TG ++ N +PQ ++ G+ + SS LCTEI L S T C L S+NL Sbjct: 234 RTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEIALPSDDMHTFTCILSSLNLA--- 290 Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVID--------INCHTIEKAKKSNHTHRAIGLGLMG 662 +D++ A I+ AVR LD+V + T+ KA + RA+GLG +G Sbjct: 291 -----RWDEISAEDIKWAVRFLDSVCSEFLEKAKKLPYDTLHKAIRFTEKARALGLGTLG 345 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 F + L + + S A + + I +A +AS ELA+E G P Sbjct: 346 FHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRELAEEHGE--------------P 391 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781 +G GMRN+ + IAP + A + G VSQ Sbjct: 392 EWCVG----------------------------TGMRNATLITIAPNMSSALLAGGVSQG 423 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL-----KYHDGSIGNIER 836 ++P N +++ + +GDF N L L R + I DL YH+GS+ +++ Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDR--LSDKEIKDLMENIATYHNGSVQHLDI 481 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 + D K + TA+EID +I AS RQ+ IDQAQS+NL+ + + +A++ Sbjct: 482 LTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFAADEKESVVASVHKAFMDD 541 Query: 897 --LKTTYYLRS 905 LK+ YYLRS Sbjct: 542 PRLKSLYYLRS 552 >gi|310722362|ref|YP_003969186.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4] gi|306021205|gb|ADM79740.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4] Length = 570 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 167/611 (27%), Positives = 256/611 (41%), Gaps = 122/611 (19%) Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E + F RVA LA + E +++LL S +TP N+GT SC + Sbjct: 44 ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAGS 102 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D + + E AMLAK G + +R G+ I ++ K+ G++P +T Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G+R G Y++ H D F +L+ Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 G+ L +P G FE E+YE+ + R +A W ++L M Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEKL-------LARDPEYMARWNELLYMRA 233 Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 TG ++ N +PQ ++ G+ + SS LCTEI L S T C L S+NL Sbjct: 234 RTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEIALPSDDMHTFTCILSSLNLA--- 290 Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVID--------INCHTIEKAKKSNHTHRAIGLGLMG 662 +D++ A I+ AVR LD+V + T+ KA + RA+GLG +G Sbjct: 291 -----RWDEISAEDIKWAVRFLDSVCSEFLEKAKKLPYDTLHKAIRFTEKARALGLGTLG 345 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 F + L + + S A + + I +A +AS ELA+E G P Sbjct: 346 FHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRELAEEHGE--------------P 391 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781 +G GMRN+ + IAP + A + G VSQ Sbjct: 392 EWCVG----------------------------TGMRNATLITIAPNMSSALLAGGVSQG 423 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL-----KYHDGSIGNIER 836 ++P N +++ + +GDF N L L R + I DL YH+GS+ +++ Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDR--LSDKEIKDLMENIATYHNGSVQHLDI 481 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 + D K + TA+EID +I AS RQ+ IDQAQS+NL+ + + +A++ Sbjct: 482 LTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFAADEKESVVASVHRAFMDD 541 Query: 897 --LKTTYYLRS 905 LK+ YYLRS Sbjct: 542 PRLKSLYYLRS 552 >gi|321496612|ref|YP_004207897.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru] gi|320332514|gb|ADW24402.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru] gi|320332597|gb|ADW24484.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru] Length = 772 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 172/717 (23%), Positives = 290/717 (40%), Gaps = 93/717 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA--------LKETEK--------EKR 338 YL + YD Y L +G ++E F+RV+ A L +T K E Sbjct: 91 YLSAKRFYDTYVLRGSG-KVESVPFLFLRVSCFCAYQCLQNPCLADTVKALNSWVIDEVS 149 Query: 339 AVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQENAM 392 V+ F+ ++S+ C+TP L ++G + LSSCF +TT + + + L Sbjct: 150 LVKYFFRMVSTMTVCCATPILRSAGVQGANLSSCFIIDRDMTTERETVQAVCSELTS--- 206 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L + G+G + HG + + L++ N N R + Y+ Sbjct: 207 LLECKSGVGIN------CAMFSHG----EKSINSLLQMVNGITAYFNDSNVRPVSTALYI 256 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDL 510 E WH + FL + ++ R ++ + DLF K N W LF P + L Sbjct: 257 EIWHHQIMSFLTAK--LPENPERCANVFQGVSVCDLFFKMYKNNPDGEWFLFDPGQFPGL 314 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 LYGK FE AY R G+ K + +V +++ + +TG P++ KD N Sbjct: 315 TGLYGKTFEEAYMALVRD---GKFKASVPLKSVMF--ALVSSIVKTGGPYVMSKDAMNRH 369 Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANN------------- 614 + G + ++NLCTE+ + + ++ + CNL SI+L H N Sbjct: 370 HWHETQGQAIVAANLCTEV-IQAPGDDISTCNLASISLPECMHMHGNGHSEGGLSCGQTT 428 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 F Y L + TAV V++ I EK + R++G+G+ G + + Sbjct: 429 DKTFCYSFLEKAVETAVFVINACIVGGMAPTEKVAR-GQLFRSMGIGVQGLADVFAMCGL 487 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLA 730 Y ++ EI ME + F A+ S+ + + G + ++ S +G F Sbjct: 488 EYFDEKSEEIDSRIMESMYFTAVKTSMNIVKLGGGEPHKRWEKSKLSKGQFHWQE---FT 544 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + R ++ S W L G N+ +A+ PTA + + G + S P + N+ Sbjct: 545 DCRPKV----HSLSQWSALSTDCAMYGTYNAQFIALMPTAGTSQLTGYADSCYPFFGNMA 600 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K + + N ++ + DL + ++ G + + D ++ +AFE Sbjct: 601 TKVSNKEEIMRPNRMFIDSIVPDDL------AAIRQVGGDLAKLPPALADKYRLFKSAFE 654 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKT-TYYLRSR 906 P I A R ++DQ+QS+ L+L+E K ++ A +GLKT YY R + Sbjct: 655 YSPEDYIRRARVRAPFVDQSQSMTLFLNEKEASKASYVKDLLMYAQEIGLKTLMYYCRIK 714 Query: 907 SAT-SVEKSTLKGVDGKLNAVPVTDPNS-------STH-SLGIPSSCTSDTECEVCQ 954 T + S + G + V P S S H S+ C + C CQ Sbjct: 715 KETICCDFSCVPGPAATPSPVSSFMPESDGDGEGQSGHVSIKRDRECDEEQCCSACQ 771 >gi|226942250|ref|YP_002797323.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent [Azotobacter vinelandii DJ] gi|226717177|gb|ACO76348.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent [Azotobacter vinelandii DJ] Length = 713 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 138/561 (24%), Positives = 238/561 (42%), Gaps = 48/561 (8%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I +QE + K G+G +++ +R GA + G ++ G + F+ + + Sbjct: 107 TLYDAMDDILAKVQEAGLTLKAGCGIGYEFSTLRPHGAFVSGAGARTSGPLSFMDIFDRM 166 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV EF+ ++ G R N + I D FM+ V Sbjct: 167 CFTVSSAGGRRGAQMATFDVAHPDVREFIRAKREDG----RLRQFNLSLLITDEFMQAVE 222 Query: 495 QNAGWTLFSPDEVSDLHDL-YGKEFEIAYENYERQA-----DRGEI--KVFRKISAVALW 546 +A W L P + +L G ++ + ++ D G++ +++ K+ A LW Sbjct: 223 NDAEWPLVFPVHPKEAAELDLGDPNQVLWRDWPLHEGYPVRDDGKVACRIYGKVRARHLW 282 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ ++ P D N + + ++N C E L C LGS+N Sbjct: 283 DMLMVSTYDFAEPGFILIDRVNQLNNNWWCEEIRATNPCGEQPLPPYGS----CLLGSVN 338 Query: 607 LLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L A A +FD+++ +R R+LDNV++IN ++ ++ R G+G + Sbjct: 339 LTAFVEEPFTARARFDWERFRQVVRIFTRLLDNVVEINNLPLQAQRREILDKRRHGMGFL 398 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF---------- 711 G SAL LL + Y SPEA +E ++ ++ELA+E+G Sbjct: 399 GLGSALTLLRLRYGSPEACVFTEEVAREMALVGWEVALELAKEKGPAPLLAQEFEVTAKM 458 Query: 712 ---KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + G D + G + R M R + EL + G R ++ +IA Sbjct: 459 LRQRPEMATDGYRVGDRVAGRVLHARYSRYMQRLAEFA-PELIAALAEQGARFTHHTSIA 517 Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ + E+ +L + D + Sbjct: 518 PTGTISLSLANNASNGIEPSFAHQYSRNLIRPGRKAKEKV---EVFSYELLAYRALVDPQ 574 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGK 883 G R+PD +A +I P ++ + QKW+D + ++ N+ D P Sbjct: 575 AQPGGDEPAHRLPD----YFVSADDIGPTQHVDIQAAAQKWVDSSLSKTANVPTDYPFEA 630 Query: 884 KLDFIYRQAWLMGLKTTYYLR 904 D IYR AW GLK R Sbjct: 631 FKD-IYRYAWRQGLKGCTTFR 650 >gi|66391912|ref|YP_238837.1| nrdA [Aeromonas phage 31] gi|62114749|gb|AAX63597.1| nrdA [Aeromonas phage 31] Length = 570 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 164/609 (26%), Positives = 260/609 (42%), Gaps = 118/609 (19%) Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E + F RVA LA + E +++LL S +TP N+G SC + Sbjct: 44 ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGPDRGMPVSCAGS 102 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D + + E AMLAK G + +R G+ I ++ K+ G++P +T Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G+R G Y++ H D F +L+ Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 G+ L +P G FE E+YE+ +K R +A W +++ M Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEK------LKA-RDPEYMARWNELMYMRA 233 Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 TG ++ N +PQ ++ G+ + SS LCTEI L S T C L S+N+ Sbjct: 234 RTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEIALPSDDMHTFTCILSSLNVSL-- 291 Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVI--------DINCHTIEKAKKSNHTHRAIGLGLMG 662 +D++ A I+ +VR LD+V +++ T+ KA + RA+GLG +G Sbjct: 292 ------WDEITADDIKWSVRFLDSVCSEFLAKAKELSYDTLHKAIRFTEKARALGLGTLG 345 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 F + L + I + S A + ++ I A S ELA+E G KG+ Sbjct: 346 FHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRELAEEYGEPEWCKGT-------- 397 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781 GMRN+ + IAP + A + G VSQ Sbjct: 398 ----------------------------------GMRNATLITIAPNMSSALLAGGVSQG 423 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLK-YHDGSIGNIERIP 838 ++P N +++ + +GDF N L LK R D + ++ D+ YH+GS+ +++ + Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEIQELMEDIATYHNGSVQHLDILT 483 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG-- 896 D K + TA+EID +I AS RQ+ IDQAQS+NL+ + + +A++ Sbjct: 484 DHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFSADEKESVIASVHRAFMDDPR 543 Query: 897 LKTTYYLRS 905 LK+ YYLRS Sbjct: 544 LKSLYYLRS 552 >gi|124262925|ref|YP_001023395.1| putative ribonucleotide reductase protein [Methylibium petroleiphilum PM1] gi|124262171|gb|ABM97160.1| putative ribonucleotide reductase protein [Methylibium petroleiphilum PM1] Length = 862 Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 159/618 (25%), Positives = 268/618 (43%), Gaps = 80/618 (12%) Query: 320 FFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F RV+ G+A E + + E F++ + + L++CF+ V Sbjct: 36 IFARVSKGIAQAEKPELREHFEKVFFDNMQAGAIGAGRIMSAGGSEIRATLANCFVQPVG 95 Query: 378 D-------DLY-GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 D D Y GI+ AL + A + GG+G D++ +R GA + GT+ + G ++ Sbjct: 96 DAVMGQDDDGYPGIYVALLQAAETMRRGGGVGYDFSRIRPKGAFVKGTHSSASGPCSYMD 155 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 V + + V G R+GA L H DV EF+ ++ G R ++ N + I + F Sbjct: 156 VFDKSCKTVESAGSRRGAQMGVLRIDHPDVMEFITAKREEG----RWNNFNVSVGIVEGF 211 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+ V W L E GKE + A R+AD + V+ K+ A ++ + Sbjct: 212 MEAVVAGGDWELVHKAEP-------GKEQKDA--GAYRRAD--GLWVYSKVPAKQIFDTI 260 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 + ++ P I F D N + ++ + ++N C E L C+LG + +L Sbjct: 261 MRSTYDFAEPGILFIDNMNKDNNLRYCERIEATNPCAEEPL----PPYGCCDLGPV-ILP 315 Query: 610 HFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 F + +FD++ + + VR LDNV+D+ +E+ ++ + R IG+G G Sbjct: 316 RFVRDPFTPAARFDFEAYRAAVAVQVRFLDNVLDVTHWPLEQQEQESRNKRRIGVGYTGL 375 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFP 722 L +L + Y S E A E + A ASV+LA+E+G + F + ++G F Sbjct: 376 GDTLIMLGLRYNSDEGRAKAVEITREMRDAAYLASVDLAKEKGRFPLFNAEKYLEEGTF- 434 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQ 780 SRLP + +K ++ G+RNS+ +AIAPT T+ A S Sbjct: 435 ------------------ASRLP-EHIKAAIREHGIRNSHLLAIAPTGTVSLAFADNASG 475 Query: 781 SIDPSYQNLYVKSNMSGD----FTVVN-------SFLVNELKQRDLWDEAMISDLKYHDG 829 I+P++ Y + + D F V S V E RD +A+ + Y D Sbjct: 476 GIEPAFSLAYNRKKRTKDGGHTFYAVKDHAFRVFSETVCEPALRDGLIDAVCN---YKDS 532 Query: 830 SI--GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKL 885 + G ++ D L TA ++ ++ Q +ID ++++N+ D P Sbjct: 533 FVVGGQTYQVKDVLPASFVTALDMTAAEHLQMMKDVQPYIDTSISKTVNVPADYPY-DDF 591 Query: 886 DFIYRQAWLMGLK--TTY 901 +Y AW GLK +TY Sbjct: 592 KGLYLAAWQAGLKGLSTY 609 >gi|9629623|ref|NP_044899.1| ribonucleotide reductase large [Murid herpesvirus 4] gi|6625624|gb|AAF19325.1|AF105037_57 61 [murid herpesvirus 4] gi|2317993|gb|AAB66451.1| ribonucleotide reductase large [murid herpesvirus 4] Length = 783 Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 170/729 (23%), Positives = 297/729 (40%), Gaps = 128/729 (17%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA------------LKETEKEKRAV-- 340 YL YD Y L N + E FMR++ A LK E ++ V Sbjct: 100 YLAAARFYDTYVLR-NDVKYESVPHMFMRISAFCAYHCIQNECLFKTLKHMELDRGNVVE 158 Query: 341 -------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL--TTVPDDLYGIFGALQENA 391 F+ +++S C+TP + ++G R LSSCF+ + + + E Sbjct: 159 NAMDLITYFFEMIASQQVCCATPVMRSAGLRDANLSSCFIFAPALDSEEKTVDAVFSELT 218 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L G+G D L + HG N + LK + N R +V AY Sbjct: 219 KLLACKSGVGMD------LSTYSHGKN-----LHAVLKALDGQITYFNDHNIRPVSVAAY 267 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD 509 +E WH ++ +FL + ++ R ++ IP++F + + + W LF P + Sbjct: 268 MEIWHTNIMDFLTAK--LPENPERCGNLFQGVCIPEIFFRTYKNDPESNWYLFDPKKAEV 325 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 L + YG F IAY Q G + I +V +++ + +TG P+I K N Sbjct: 326 LTNTYGYMFSIAYAGLVEQ---GAYEAVVPIKSVMF--ALVSCIIKTGGPYILNKKAINR 380 Query: 570 R-----SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------- 614 S Q+ + + +NLC E+ + E + CNL +I L ++ Sbjct: 381 HDWHEWSTHQYRAI-NCANLCAEV-IQYPGENVSTCNLANICLPKCLEDDKFVSGKSCLL 438 Query: 615 ----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +F ++L AV +++ I ++A++ + R++G+G+ G ++ Sbjct: 439 TYEREFSIERLERATEAAVFIINACIHGGTLPTQRARRG-QSDRSMGIGVQGLADTFAMM 497 Query: 671 HIPYASPEAVEIADESM-EFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVF---PID 724 + Y + EI D+ + E + F+A++ S+ + + Y++++ S GV D Sbjct: 498 GLGYFDAGS-EILDQKIAETLYFNALNTSINFVKIGKGEPYANYEQSKHSIGVLHWHDWD 556 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + RDE W++L + + G+ NS +A PTA I G S S P Sbjct: 557 MCSPMVYTRDE----------WEDLARSCEVHGVYNSQFVAYMPTAGTGQITGYSDSFYP 606 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDL-------WDEAMISDLKYHDGSIGNIERI 837 Y ++ K + + N L++ + ++ WD I ++ Sbjct: 607 FYSSMSSKVSNKEEILRPNMTLMSRMSDSEVQTLRECNWD----------------IAKL 650 Query: 838 PDDL---KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQ 891 P+ L +I +AF+ +P + A R +IDQ+QS+ L+L+E S + + Sbjct: 651 PEPLLQKYRIFLSAFDYEPSLYVRRAMLRAPFIDQSQSMTLFLNEDYASSASNIKNLLMY 710 Query: 892 AWLMGLKT-TYYLRSR-SATSVEKSTLK--------------GVDGKLNAVPVTDPNSST 935 W GLKT YY R R +ATS E ++ G G+ + +T Sbjct: 711 GWECGLKTLMYYCRIRKTATSNEFECVRRNSQQKYVNCADGEGAGGEEPSENCIKAEGAT 770 Query: 936 HSLGIPSSC 944 SL + +SC Sbjct: 771 CSLSVGASC 779 >gi|255655272|ref|ZP_05400681.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile QCD-23m63] Length = 659 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 148/581 (25%), Positives = 258/581 (44%), Gaps = 94/581 (16%) Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399 L+ F+ + L N G + S+C++ P D + IF ++ A Y GG Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D + +R GA ++ + G + F+++ + T + Q G+R GA+ ++ H ++ Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEF+D++ D + N + + D FM+ V + LY FE Sbjct: 254 EEFIDIKT----DLEKVTKANISVRVTDEFMQAVREKK---------------LYNCTFE 294 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576 + GE K+ + ++A L+ K + ++ P I F D N+ S ++ Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNLMSEDKNF 345 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631 N C E L S C LGSINL + F + FD +KL S +R AV Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400 Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L++V+D +N H +++ + S H +R IGLG+MG L + I Y S E++E+ D + Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A+ S +A+E G +S +K + F I+++ ++ Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804 K+ VK G+RNS + I PT +I+ + G+S I+P + Y++ S + V Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + ++ + DE + D +IG ERI +++K+ W Q Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 K+ID + S + + E + + + IY +AW GLK R Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642 Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G F SKI A+ KA + EG G R + DI + + +N Sbjct: 4 IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDRDL-AYDISRKIAND-------YNSME 54 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +E+IQD VE LM+S I + Y+LYRE RS++R Sbjct: 55 KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94 >gi|296451257|ref|ZP_06892997.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08] gi|296880391|ref|ZP_06904354.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07] gi|296259863|gb|EFH06718.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08] gi|296428632|gb|EFH14516.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07] Length = 729 Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 148/581 (25%), Positives = 258/581 (44%), Gaps = 94/581 (16%) Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399 L+ F+ + L N G + S+C++ P D + IF ++ A Y GG Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D + +R GA ++ + G + F+++ + T + Q G+R GA+ ++ H ++ Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEF+D++ D + N + + D FM+ V + LY FE Sbjct: 254 EEFIDIKT----DLEKVTKANISVRVTDEFMQAVREKK---------------LYNCTFE 294 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576 + GE K+ + ++A L+ K + ++ P I F D N+ S ++ Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNLMSEDKNF 345 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631 N C E L S C LGSINL + F + FD +KL S +R AV Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400 Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L++V+D +N H +++ + S H +R IGLG+MG L + I Y S E++E+ D + Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A+ S +A+E G +S +K + F I+++ ++ Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804 K+ VK G+RNS + I PT +I+ + G+S I+P + Y++ S + V Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + ++ + DE + D +IG ERI +++K+ W Q Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 K+ID + S + + E + + + IY +AW GLK R Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642 Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G F SKI A+ KA + EG G R + DI + + +N Sbjct: 4 IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDRDL-AYDISRKIAND-------YNSME 54 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +E+IQD VE LM+S I + Y+LYRE RS++R Sbjct: 55 KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94 >gi|66732768|gb|AAY53359.1| gp56 [Listeria phage P100] Length = 343 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 172/355 (48%), Gaps = 61/355 (17%) Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTE-------ITLNSSSEETAVCNLGSINLLAHFAN 613 +T ++ + +Q + S+ + TE I + + + VCNL SINL + F+ Sbjct: 27 LTGRELTTLTESKQEIAQNMSATVVTEEIIDGDKIVVTKEAGDFVVCNLSSINLGSVFSE 86 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D + + VR+LDNVI++N + +A +N +RA+GLG G+ L I Sbjct: 87 E----DVIDRLVTIQVRMLDNVIELNKLPVPQALITNQKYRAVGLGTFGWHHLLAKKGIH 142 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S EA AD E I+FH I AS++LA+E+GAY FK S WD G + Sbjct: 143 WDSEEATNFADSLYERIAFHTIEASMKLAEEKGAYPYFKDSSWDTGEYF----------- 191 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + N TS W +L K+VK G+RN MA+AP + A I G + SIDP Y + Y + Sbjct: 192 --SSRNYTSD-TWVDLAKKVKEKGIRNGYLMAVAPNMSTAQIAGSTASIDPIYDSFYYE- 247 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +++D + +L + + + +A++++ Sbjct: 248 -----------------EKKDYRRPVIAPELNLNTYAF-------------YKSAYKVNQ 277 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905 + ++ +RQ+ IDQA S N Y+ PSG KL ++ AW GLKTTYY+RS Sbjct: 278 IQSVKQNGKRQRHIDQAISFNFYV--PSGIKASKLLELHTTAWSEGLKTTYYVRS 330 >gi|255649712|ref|ZP_05396614.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile QCD-37x79] Length = 659 Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 148/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%) Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399 L+ F+ + L N G + S+C++ P D + IF ++ A Y GG Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D + +R GA ++ + G + F+++ + T + Q G+R GA+ ++ H ++ Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEF+D++ D + N + + D FM+ V + LY FE Sbjct: 254 EEFIDIKT----DLEKVTKANISIRVTDEFMQAVREKK---------------LYNCTFE 294 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576 + GE K+ + ++A L+ K + ++ P I F D N S ++ Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631 N C E L S C LGSINL + F + FD +KL S +R AV Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400 Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L++V+D +N H +++ + S H +R IGLG+MG L + I Y S E++E+ D + Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A+ S +A+E G +S +K + F I+++ ++ Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804 K+ VK G+RNS + I PT +I+ + G+S I+P + Y++ S + V Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + ++ + DE + D +IG ERI +++K+ W Q Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 K+ID + S + + E + + + IY +AW GLK R Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G F SKI A+ KA + EG G R + DI + + +N Sbjct: 4 IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +E+IQD VE LM+S I + Y+LYRE RS++R Sbjct: 55 KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94 >gi|121611904|ref|YP_999711.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Verminephrobacter eiseniae EF01-2] gi|121556544|gb|ABM60693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Verminephrobacter eiseniae EF01-2] Length = 813 Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 155/607 (25%), Positives = 259/607 (42%), Gaps = 82/607 (13%) Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ--LSSCFLTT 375 Q + RVA LA E + + E L + + ++ Q L +CF+ Sbjct: 34 QMLYQRVARALASVEAPELRSRYEALFLANLQAGAIGAGRIMSAAGTDIQATLINCFVQP 93 Query: 376 V--------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 V D GI+ AL+E A + GG+G D++ +R GA + T + G + Sbjct: 94 VGDCIQGQDEDGFPGIYEALREAAETMRRGGGVGYDFSRIRPKGARVMATASMASGPCSY 153 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 + V + + V G R+GA L H DV EF+ ++ G R ++ N + +PD Sbjct: 154 MNVFDQSCATVESAGARRGAQMGVLRIDHPDVHEFISAKRQPG----RWNNFNVSVSVPD 209 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 F++ + +A W L +H +A ++R AD G+ V+ + A ALW Sbjct: 210 AFIQALQDDAAWDL--------VHKARPGAALLAQGAHQR-AD-GQW-VYASVPARALWE 258 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 +++ ++ P I F N + + + ++N C E L + C+LG + + Sbjct: 259 RIMRSAYDYAEPGILFLGRINEDNNLHYCETITATNPCGEQPLPA----YGCCDLGPV-I 313 Query: 608 LAHFANNQFDYD--------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 L F + F + A + VR LDNV+D+ + + ++ R IG+G Sbjct: 314 LPRFVRHPFGFGGAAAFDFEAFAQAVALQVRALDNVLDLTYWPLPQQREEAMAKRRIGVG 373 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G + L +L + Y PE +A + A ASV+LA+E+GA+ F + Sbjct: 374 FTGLGNTLAMLCLRYDRPEGRAMAVRIARCMRDAAYRASVDLAREKGAFPHFSAGPY--- 430 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICG 777 LAE R SRLP + LK ++ G+RNS+ ++IAPT T+ A Sbjct: 431 ---------LAEGR------FASRLP-EALKAAIRQHGIRNSHLLSIAPTGTVSLAFADN 474 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S I+PS+ Y + + D + V + R + +L G+ + + Sbjct: 475 ASNGIEPSFAWTYKRKKRAADGGSTE-YAVQDHAWR------LYRELG------GDAQAL 521 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAW-- 893 PD +A ++ I Q W+D A +++N+ +D P D +Y QAW Sbjct: 522 PD----YFVSALDMPVQAHIAMMEAVQPWVDTAISKTVNIPVDYPYEDFKD-LYLQAWRA 576 Query: 894 -LMGLKT 899 L GL T Sbjct: 577 RLKGLAT 583 >gi|255516612|ref|ZP_05384288.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile QCD-97b34] Length = 689 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 148/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%) Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399 L+ F+ + L N G + S+C++ P D + IF ++ A Y GG Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D + +R GA ++ + G + F+++ + T + Q G+R GA+ ++ H ++ Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEF+D++ D + N + + D FM+ V + LY FE Sbjct: 254 EEFIDIKT----DLEKVTKANISIRVTDEFMQAVREKK---------------LYNCTFE 294 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576 + GE K+ + ++A L+ K + ++ P I F D N S ++ Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631 N C E L S C LGSINL + F + FD +KL S +R AV Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400 Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L++V+D +N H +++ + S H +R IGLG+MG L + I Y S E++E+ D + Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A+ S +A+E G +S +K + F I+++ ++ Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804 K+ VK G+RNS + I PT +I+ + G+S I+P + Y++ S + V Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + ++ + DE + D +IG ERI +++K+ W Q Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 K+ID + S + + E + + + IY +AW GLK R Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G F SKI A+ KA + EG G R + DI + + +N Sbjct: 4 IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +E+IQD VE LM+S I + Y+LYRE RS++R Sbjct: 55 KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94 >gi|302344178|ref|YP_003808707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfarculus baarsii DSM 2075] gi|301640791|gb|ADK86113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfarculus baarsii DSM 2075] Length = 604 Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 165/616 (26%), Positives = 253/616 (41%), Gaps = 82/616 (13%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFHFM 352 ++L RY R E P+ RVA +A E + A F+ L++ F+ Sbjct: 14 ELLRRRYLAVGPDGRHESPERMLWRVARAVAAAEERWDGAASAAAMAGRFFELMAGGLFL 73 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G R QLS+CF+ V D L IF AL++ A++ K GG G D++ +R G Sbjct: 74 PNSPTLINAGRRLGQLSACFVLPVEDSLESIFEALKQAALIHKSGGGTGFDFSRLRPRGD 133 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G S G + F+ V + AV QGG R+GA A L WH D+ EF+ ++ G Sbjct: 134 DVASTRGVSSGPLSFMHVFDVATEAVRQGGVRRGANMASLAAWHPDILEFVTAKQTPG-- 191 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R + N + W D FM Q GW L +P + L E E R A Sbjct: 192 --RLENFNLSLWADDAFMDAAAQGRGWALRNPRHGRTVATLEAAEL---LEVVARAAH-- 244 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +G P + F N +P +G + + N C E L Sbjct: 245 ----------------------ASGEPGMLFGGAINRANPTPALGAIEAVNPCGEQPLLP 282 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 C LGS+ L D+ L A R LD+V++IN + + +++ Sbjct: 283 YES----CVLGSLALPRFVRGGDMDWPALEEAAALATRFLDDVLEINRQPLPQVAEASLR 338 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R IGLGL+G AL +L + Y S A ++A M ++ A S LA+ RG + +F Sbjct: 339 TRKIGLGLLGLADALIMLGLAYDSQPARDLAGRVMARVTAAAREQSAALARRRGDFPAFA 398 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 S R A N MRN+ IAPT + Sbjct: 399 NS----------------APRAAGAKN------------------MRNATVSTIAPTGAL 424 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + + G S I+P + Y + G + + L+ L A ++ L+ G Sbjct: 425 SLLLGWSSGIEPLFALHYHRHMQDGQVLELTCRPFLQRLRALGLDSPANLAALRAQ-GRA 483 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK---KLDFI 888 ++ +P ++ ATA +I P + + Q+ +D S + L PS ++ I Sbjct: 484 SAVQGLPAAEARLFATAHQIAPHDHLAMQAACQRHVDNGVSKTINL--PSAATVGQVREI 541 Query: 889 YRQAWLMGLKTTYYLR 904 + QA + LK R Sbjct: 542 FLQAHALNLKGVTVFR 557 >gi|312137428|ref|YP_004004765.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanothermus fervidus DSM 2088] gi|311225147|gb|ADP78003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanothermus fervidus DSM 2088] Length = 789 Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 39/311 (12%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL N + D+ KL R A+ LDNVID+N + ++ +K R +GLG Sbjct: 484 CNLGSINLTKIVKNKKIDWKKLRRITRIAIHFLDNVIDVNKYPTKEIEKMTKKTRKVGLG 543 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF L L IPY SP+A++IA++ M FIS A SVEL +ERG++ SFKGS W++ Sbjct: 544 VMGFADMLIKLGIPYDSPKALQIAEKLMNFISKEARKKSVELGEERGSFPSFKGSKWEKE 603 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + MRN+ IAPT T++ I VS Sbjct: 604 GYE----------------------------------HMRNATTTTIAPTGTLSIIANVS 629 Query: 780 QSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI+P + +++ M G + ++ K+R + ++ + GSI + + IP Sbjct: 630 SSIEPIFAIAFIREVMEGTVLLEIHPLFEKIAKERGFYSLDLMKKIA-KKGSIQDFDEIP 688 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 +D++++ T+ +IDP+W ++ + QK++D A S + L + K ++ ++ A+ +G Sbjct: 689 EDIRRLFVTSHDIDPIWHVKMQAAFQKYVDNAVSKTVNLPKDAKPKDVERVFLTAYKLGC 748 Query: 898 K--TTYYLRSR 906 K T Y S+ Sbjct: 749 KGITVYRYGSK 759 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 37/296 (12%) Query: 297 GLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET---EKEKRAVE--FYNLLSSFH 350 L++L RY + G IE P+ F RVA +A +T EK+ E FYN++ +F Sbjct: 7 ALEVLKRRYLRRNEKGEVIETPKEMFRRVAHHVAKADTIYGEKDISETEEKFYNIMKNFE 66 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+GT QLS+CF+ V D + IF AL+ A++ K GG+G ++ +R Sbjct: 67 FLPNSPTLMNAGTAIGQLSACFVLPVGDSIEEIFDALKYMALIHKSGGGVGFSFSKLRPK 126 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G + T G + G + F+++ + + QGG+R+GA L H D+EEF++ +K G Sbjct: 127 GDVVASTGGVASGPVSFMRIFDVATDVIKQGGRRRGANMGVLRYDHPDIEEFIESKKVEG 186 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + + N + + FM V +N + L +P R Sbjct: 187 ----KFSNFNISVAADEKFMDAVIKNKEYELINP----------------------RNKK 220 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + R I +RK++ M + G P + F D N +P H+G + ++N C Sbjct: 221 VVKKVKARNI-----FRKIVKMAWSHGDPGMIFLDHINKHNPTPHLGKIEATNPCV 271 >gi|254974806|ref|ZP_05271278.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile QCD-66c26] gi|255092194|ref|ZP_05321672.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile CIP 107932] gi|255313933|ref|ZP_05355516.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile QCD-76w55] gi|260682868|ref|YP_003214153.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile CD196] gi|260686466|ref|YP_003217599.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile R20291] gi|306519825|ref|ZP_07406172.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile QCD-32g58] gi|260209031|emb|CBA62135.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile CD196] gi|260212482|emb|CBE03396.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile R20291] Length = 729 Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 148/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%) Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399 L+ F+ + L N G + S+C++ P D + IF ++ A Y GG Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D + +R GA ++ + G + F+++ + T + Q G+R GA+ ++ H ++ Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEF+D++ D + N + + D FM+ V + LY FE Sbjct: 254 EEFIDIKT----DLEKVTKANISIRVTDEFMQAVREKK---------------LYNCTFE 294 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576 + GE K+ + ++A L+ K + ++ P I F D N S ++ Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631 N C E L S C LGSINL + F + FD +KL S +R AV Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400 Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L++V+D +N H +++ + S H +R IGLG+MG L + I Y S E++E+ D + Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A+ S +A+E G +S +K + F I+++ ++ Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804 K+ VK G+RNS + I PT +I+ + G+S I+P + Y++ S + V Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + ++ + DE + D +IG ERI +++K+ W Q Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 K+ID + S + + E + + + IY +AW GLK R Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642 Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G F SKI A+ KA + EG G R + DI + + +N Sbjct: 4 IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +E+IQD VE LM+S I + Y+LYRE RS++R Sbjct: 55 KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94 >gi|85057305|ref|YP_456221.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows witches'-broom phytoplasma AYWB] gi|84789410|gb|ABC65142.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows witches'-broom phytoplasma AYWB] Length = 845 Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 153/576 (26%), Positives = 255/576 (44%), Gaps = 57/576 (9%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPTL N+G +H + SCFL D L I + + L+K GG+ + T +R Sbjct: 295 FTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINITNLRA 354 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G I G G +GV+ K+ + + +Q G+R GA YL +H D+ +FL +K + Sbjct: 355 KGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLNVFHADIIDFLSTKKLS 414 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE-NYER 527 D+ R ++ +P+ ++ +N F P V YGK F +IA + +Y Sbjct: 415 ADEDVRVKTLSLGVVVPNKMIELARKNEVMYTFFPHTV---FLEYGKNFADIAVDMSYWY 471 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 KV +K I+ L + M E+G+P++ F D N + V SNLCT Sbjct: 472 DILIVNPKVQKKAINPRQLLELIAQMQGESGYPYLMFCDNTNQANTSDL--KVKFSNLCT 529 Query: 587 EI---TLNSSSE---ETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVI- 636 EI T+ S + +T +G S NL + N + + T+ A+ V++ V Sbjct: 530 EILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNTIQETVFMAMEVMNCVSE 589 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + N + K+N +R++G G+MG L +I + S E ++ D I+F+++ Sbjct: 590 NTNISYVPAVAKANFLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAINFYSLL 649 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKK 751 S A+ G + FK S + G + + +L + M + LP W++LK+ Sbjct: 650 HSCNKAKTTGKKFYRFKKSKYADGSYFNNRGEILPKTNKIKKMFQNITLPTQSDWNQLKQ 709 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 V G+ NS+ +AIAP +I I G + S+ P Q LV E Sbjct: 710 DVMKFGLYNSHRLAIAPNGSIGYIMGATPSLTPVKQ------------------LVEERT 751 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + + LK ++ TA++I+ LI+ + QK +DQ Sbjct: 752 YGNSKTYCPMPALK--------------QASFMYTTAYKINKYDLIDVIAIAQKHVDQGI 797 Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S L + + + ++L Y A +KT YY R++ Sbjct: 798 SFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQ 833 >gi|299532605|ref|ZP_07045994.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni S44] gi|298719408|gb|EFI60376.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni S44] Length = 797 Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 122/447 (27%), Positives = 197/447 (44%), Gaps = 56/447 (12%) Query: 368 LSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 L +CF+ V D G I+ AL + A + GG+G D++ +R GA + GTN Sbjct: 79 LINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLRPRGALVRGTNS 138 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + G F+ V + + V G R+GA L H DV EF+ ++ G R ++ Sbjct: 139 FASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQKG----RWNNF 194 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 N + + FM+ V +A W L +H E +I + R D G + V++ Sbjct: 195 NVSVGVSSAFMQAVRDDAEWEL--------IHVASPSEAQIQAGAHRR--DDG-LWVYKS 243 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 A ALW ++ ++ P I F D N + + + ++N C E L Sbjct: 244 QPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQPL----PPYGC 299 Query: 600 CNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C+LG + +L F F D + + + VR+LDNV+D + + ++ Sbjct: 300 CDLGPV-ILTRFVREAFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPLPEQQREAQQK 358 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G G AL LL + YAS ++ A + A +ASVELA+E+GA+ F Sbjct: 359 RRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAREKGAFPLFNA 418 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI- 772 + + F RLP EL+ +K G+RNS+ ++IAPT T+ Sbjct: 419 KQYLKSGF-------------------AKRLP-KELRATIKKHGLRNSHLLSIAPTGTVS 458 Query: 773 -ANICGVSQSIDPSYQNLYVKSNMSGD 798 A S I+P++ Y + + + Sbjct: 459 LAFADNASNGIEPAFSWTYTRKKRTAN 485 >gi|117926763|ref|YP_867380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Magnetococcus sp. MC-1] gi|117610519|gb|ABK45974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Magnetococcus sp. MC-1] Length = 707 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 159/663 (23%), Positives = 282/663 (42%), Gaps = 69/663 (10%) Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVE 341 D+ +RD + I +Y L G + + F RVA LAL E+E + Sbjct: 9 DINPQRDLELQSASQDIWDRKYRLKSKGGDPVDKTIEDTFKRVARALAL--VEQEPLQEQ 66 Query: 342 FYNLLSSFHFMCSTPT---LFNSGTR--HPQLSSCFLT---TVPDDLYGIFGALQENAML 393 +Y + P + N+G R P S+ T TV D + I A+ E + Sbjct: 67 WYQRFLWALMQGAIPAGRIVSNAGARDHKPATSTINCTVSQTVKDSMDDILAAVHEAGLT 126 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 K G+G +++ +R GA + G + G + F+ + + V+ G R+GA A + Sbjct: 127 LKAGCGIGYEFSTLRPRGAFVAGAGSSTSGPLSFMDIYDAMCRTVSSAGGRRGAQMATFD 186 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DV +F+ ++ G R N + + + FM+ V + W L P +L D Sbjct: 187 ITHPDVVDFIRAKREDG----RLRQFNLSCLVTEQFMEAVKSDMDWELVFPANHYELDD- 241 Query: 514 YGKEFEIAYENYE-----RQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 EI Y ++ + ++GE+ +V++ I A LW +++ ++ P D Sbjct: 242 --PTVEIVYRHWPVTEGYKTNEQGEVACRVWKSIPARRLWDVVMSSTYDYAEPGFILIDK 299 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDK 620 N ++ + ++N C E L C LGS+N LA F N +FD+ + Sbjct: 300 VNEQNNNWFCEDIRATNPCGEQPL----PPYGACLLGSVN-LARFVKNPFTAKAEFDWAR 354 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 + R+LDNV++I+ + R G+G +G S L +L++ Y ++V Sbjct: 355 FKEVVAVFTRMLDNVVEIHGLPLPGQADEIAHKRRHGMGFLGLGSTLTMLNMVYGDRQSV 414 Query: 681 EIADESMEFISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVR 733 E + ++ +ELA E+G Y+ + + + D I + ++ Sbjct: 415 EFTSQVAREMALTGWEVGLELANEKGPAPVMNQMYTITEAMMAKRPEMANDGICVGDQLP 474 Query: 734 DELAMNRTSR----LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQ 787 ++ M R SR P + L+KR++T G R S+ +IAPT TI+ G VS I+PS+ Sbjct: 475 GKVLMARYSRYMAKFP-ERLRKRIETEGSRFSHHSSIAPTGTISLSLGNNVSNGIEPSFA 533 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + Y + + + K ++ D L Y + + ++ K + Sbjct: 534 HKYSR-----------NIIREGRKTKEKVDVFSYELLAYRALVNPDADPYAEEEKNLLPA 582 Query: 848 AF----EIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 F I+P ++ + Q+W+D ++++N+ D P + D IY A+ GLK Sbjct: 583 TFLDSNAINPRAHVDIQAAAQEWVDSSISKTINVPTDFPYDEFKD-IYLYAYEKGLKGCT 641 Query: 902 YLR 904 R Sbjct: 642 TFR 644 >gi|126698858|ref|YP_001087755.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile 630] gi|255100279|ref|ZP_05329256.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile QCD-63q42] gi|255306218|ref|ZP_05350390.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile ATCC 43255] gi|115250295|emb|CAJ68117.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile] Length = 729 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 147/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%) Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399 L+ F+ + L N G + S+C++ P D + IF ++ A Y GG Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D + +R GA ++ + G + F+++ + T + Q G+R GA+ ++ H ++ Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 E+F+D++ D + N + + D FM+ V + LY FE Sbjct: 254 EDFIDIKT----DLEKVTKANISVRVTDEFMQAVREKK---------------LYNCTFE 294 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576 + GE K+ + ++A L+ K + ++ P I F D N S ++ Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631 N C E L S C LGSINL + F + FD +KL S +R AV Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400 Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L++V+D +N H +++ + S H +R IGLG+MG L + I Y S E++E+ D + Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 + A+ S +A+E G +S +K + F I+++ ++ Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804 K+ VK G+RNS + I PT +I+ + G+S I+P + Y++ S + V Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + ++ + DE + D +IG ERI +++K+ W Q Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 K+ID + S + + E + + + IY +AW GLK R Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G F SKI A+ KA + EG G R + DI + + +N Sbjct: 4 IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +E+IQD VE LM+S I + Y+LYRE RS++R Sbjct: 55 KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94 >gi|78127896|gb|ABB22280.1| ribonucleotide-reductase large subunit-like protein [Ovine herpesvirus 2] Length = 785 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 145/611 (23%), Positives = 256/611 (41%), Gaps = 79/611 (12%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSG 398 F++ L+ C+TP + ++GTRH L+SCFL + PD + LQE L Sbjct: 169 FFSPLAQQLVCCATPIMRSAGTRHANLASCFLMS-PDLSSEANTTAALLQELTSLLSVKS 227 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G D T G GKS V L + + N R +V AY+E WH Sbjct: 228 GVGCDVTSF--------GHGGKS--VQSCLSLIDAQVEYFNDQNPRPVSVAAYMEVWHSQ 277 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT--QNAGWTLFSPDEVSDLHDLYGK 516 ++EFL ++ ++ R + IP LF + N W LFSP++ +L LYG+ Sbjct: 278 IQEFLSVK--LPENPNRCASIYQGLCIPSLFFDKCLTDSNQPWYLFSPEDAGNLPHLYGE 335 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF+ YE R E + ++ +L ++ + +TG P+I +KD CN R ++ Sbjct: 336 EFKEEYERLVR-----ERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDACNARHWKEMR 390 Query: 577 G-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------------------------ 611 G + S+NLC E+ + + + CNL ++ L Sbjct: 391 GQAIASANLCAEV-IQYPGRDVSTCNLANVCLPMCLISTPVDPRAPSGQNYSGEVVKSEA 449 Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +N F L + AV +++ ID E ++ R++G+G+ G + Sbjct: 450 VSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRGQR-ERSMGIGVHGLADVFAEM 508 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-G 727 Y P A + + E + + A+ S + + G + ++ S +GVF + G Sbjct: 509 GYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYEESKLSRGVFHWEGWDG 568 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + + W L + G+ NS +A+ PT + + G ++S P + Sbjct: 569 VKLSIPEH---------EWSSLARSCVHSGVYNSQFVALMPTVGSSLLTGYAESYYPFFA 619 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA- 846 N+ K + + N + + DL + G++ +P L++ ++ Sbjct: 620 NVSSKVSSKEEIMKPNVTFWKRVSEEDLHTVRVYG---------GDVALLPSPLREKYSL 670 Query: 847 --TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT- 900 +AF+ + A R ++DQ+QS + YL E S K L + + GLKT Sbjct: 671 FLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLILAGYAHGLKTIM 730 Query: 901 YYLRSRSATSV 911 YY + + +++ Sbjct: 731 YYCKVKKQSTM 741 >gi|260654687|ref|ZP_05860177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Jonquetella anthropi E3_33 E1] gi|260630703|gb|EEX48897.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Jonquetella anthropi E3_33 E1] Length = 881 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 158/604 (26%), Positives = 255/604 (42%), Gaps = 105/604 (17%) Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-GTNGKS 421 T + QL +CF+ +VPD + GIF A+++ A+++KY GG+G ++ +R GA I GT GK+ Sbjct: 159 TANQQLFACFVVSVPDSIEGIFDAVKDAAIISKYGGGVGANFGHLRESGAPIKGGTGGKA 218 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + F++ N V QGG+R+ A+ L H D+E F+D + G R N Sbjct: 219 SGPVSFMETWNTMGSVVVQGGRRRAALMGMLPDNHPDIERFMDAKTEDG----RLPYFNI 274 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D + + + L S R + K + Sbjct: 275 SVCVSDRLVNAAREGGDFPLVS---------------------------RVDGKTAATVP 307 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVGVVHSSNLCTEITLNSSSEET 597 A LW K+ + + G P + F D +R + V+ S+N C E L + + Sbjct: 308 AAQLWDKLCSNAWRRGDPGVFFIDRAGADNLLREDPEF--VIESTNPCGEQPLPNYTS-- 363 Query: 598 AVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNLGSINL A A + FD + + ++ LD VID + +E+ + Sbjct: 364 --CNLGSINLSAFVAPDGSGQLAFDEARFVDQVYRSMVYLDLVIDSCSYPLERIGRRTRQ 421 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE----LAQERGAY 708 R +GLGLMG A + Y SPE D ++ A+ A+V+ L +E A Sbjct: 422 IRPVGLGLMGLSDAAIASGLVYGSPEFSGFCDRLASVMAVCALLATVDSVDHLGKEPFAA 481 Query: 709 SS------------FKGSLW-DQGVFPIDSIGLLAEV--RDELAMNRT------------ 741 SS G L+ Q + +D G L V EL + T Sbjct: 482 SSAVVKLFAPLRDELGGDLFMSQTMETLDEEGFLRVVGRMKELGLPYTLCNTLQAAPGVL 541 Query: 742 SRLPW---DELKKRVKTI---GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 RL +EL++ + + MRNS ++IAPT +I+ + S I+P++ + + M Sbjct: 542 KRLEGGSPEELRRLLGAVLGGRMRNSRRLSIAPTGSISMLLDASAGIEPNFAWSWNRKVM 601 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 D N + + R + DE K + G +E TA+++ P Sbjct: 602 KSDG---NGYETRQYFHRLVTDEG-----KRQLSAGGKLE------DPRFVTAYDLSPEG 647 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK--TTYYLRSRSATS 910 +E +++D S + L PS +D +Y + + +G K T Y SRS Sbjct: 648 HVEVTGIFARYVDSGISKTVNL--PSSATVDDVKAVYERCYDLGCKGITIYRDGSRSEQP 705 Query: 911 VEKS 914 +E S Sbjct: 706 IEVS 709 >gi|264678224|ref|YP_003278131.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2] gi|262208737|gb|ACY32835.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2] Length = 797 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 123/447 (27%), Positives = 198/447 (44%), Gaps = 56/447 (12%) Query: 368 LSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 L +CF+ V D G I+ AL + A + GG+G D++ +R GA + GTN Sbjct: 79 LINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLRPRGALVRGTNS 138 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + G F+ V + + V G R+GA L H DV EF+ ++ G R ++ Sbjct: 139 FASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQKG----RWNNF 194 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 N + + FM+ V +A W L +H E +I + R D G + V++ Sbjct: 195 NVSVGVSSAFMQAVRDDAEWEL--------VHVASPSEAQIQAGAHRR--DDG-LWVYKS 243 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 A ALW ++ ++ P I F D N + + + ++N C E L Sbjct: 244 QPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQISATNPCGEQPL----PPYGC 299 Query: 600 CNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C+LG + +L F + F D + + + VR+LDNV+D + + ++ Sbjct: 300 CDLGPV-ILTRFVRDSFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPLPEQQREAQQK 358 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G G AL LL + YAS ++ A + A +ASVELA+E+ Sbjct: 359 RRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAREK-------- 410 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI- 772 GVFP L + L RLP EL+ ++ G+RNS+ ++IAPT T+ Sbjct: 411 -----GVFP------LFNAKQYLKSGFAKRLP-KELRATIRKHGLRNSHLLSIAPTGTVS 458 Query: 773 -ANICGVSQSIDPSYQNLYVKSNMSGD 798 A S I+P++ Y + + + Sbjct: 459 LAFADNASNGIEPAFSWTYTRKKRTAN 485 >gi|157325079|ref|YP_001468504.1| gp124 [Listeria phage A511] gi|66733087|gb|AAY52905.1| gp124 [Listeria phage A511] Length = 343 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/355 (30%), Positives = 170/355 (47%), Gaps = 61/355 (17%) Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTE-------ITLNSSSEETAVCNLGSINLLAHFAN 613 +T + + +Q + S+ + TE I + + + VCNL SINL + F+ Sbjct: 27 LTGRGLTTLTESKQEIAQNMSATVVTEEIIDGDKIVVTKEAGDFVVCNLSSINLGSVFSE 86 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D + + VR+LDNVI++N + +A +N +RA+GLG G+ L I Sbjct: 87 E----DVIDRLVTIQVRMLDNVIELNKLPVPQALITNQKYRAVGLGTFGWHHLLAKKGIH 142 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S EA AD E I+FH I AS++LA+E+GAY FK S WD G + Sbjct: 143 WDSEEATSFADSLYERIAFHTIEASMKLAEEKGAYPYFKDSSWDTGEYF----------- 191 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + N TS W +L K+VK G+RN MA+AP + A I G + SIDP Y Y + Sbjct: 192 --SSRNYTSD-TWVDLAKKVKEKGIRNGYLMAVAPNMSTAQIAGSTASIDPIYDYFYYE- 247 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +++D + +L + + + +A++++ Sbjct: 248 -----------------EKKDYRRPVIAPELNLNTYA-------------FYKSAYKVNQ 277 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905 + ++ +RQ+ +DQA S N Y+ PSG KL ++ AW GLKTTYY+RS Sbjct: 278 IQSVKQNGKRQRHVDQAISFNFYV--PSGIKASKLLELHTTAWSEGLKTTYYVRS 330 >gi|56807758|ref|ZP_00365618.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus pyogenes M49 591] Length = 522 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 139/542 (25%), Positives = 234/542 (43%), Gaps = 73/542 (13%) Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 G+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H Sbjct: 2 AGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHP 61 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FL +K D++ R ++ +PD F + +N LFSP V + + Sbjct: 62 DIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNY 121 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +I E A+ K KI A L ++ + E+G+P+I D N +P G Sbjct: 122 LDITNMYDELVANPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--G 177 Query: 578 VVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI +N + E + CNLGS N+L + F +I Sbjct: 178 KIIMSNLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSI 232 Query: 626 RTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +T R L V D + + K N GLG MG S L HI Y SPE++E D Sbjct: 233 KTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTD 292 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RT 741 +++ + S +A+ER + F+ S + G + + + +L + + Sbjct: 293 IYFMLLNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKD 352 Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 +P W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + Sbjct: 353 HFIPQASDWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------- 404 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 E +Q E I + Y + + + IP + +A+++D +I Sbjct: 405 -----------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVI 442 Query: 858 ESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + + + +DQ SL L+L + + + L + A+ G+K+ YY+ Sbjct: 443 DVYAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSMYYI 502 Query: 904 RS 905 R+ Sbjct: 503 RT 504 >gi|221067377|ref|ZP_03543482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni KF-1] gi|220712400|gb|EED67768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni KF-1] Length = 797 Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 118/447 (26%), Positives = 197/447 (44%), Gaps = 56/447 (12%) Query: 368 LSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 L +CF+ V D G I+ AL + A + GG+G D++ +R GA + GTN Sbjct: 79 LINCFVQPVADATNGFDTQGNPGIYTALSQAAETMRRGGGVGYDFSNLRPRGALVRGTNS 138 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + G F+ V + + V G R+GA L H DV EF+ ++ G R ++ Sbjct: 139 NASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQKG----RWNNF 194 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 N + + + FM+ V +A W L LH + +I + R+ + V++ Sbjct: 195 NVSVGVSNAFMQAVRDDAEWEL--------LHVASPSDAQIQAGAHRREDG---LWVYQS 243 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 A LW ++ ++ P I F D N + + + ++N C E L Sbjct: 244 QPARTLWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQPL----PPYGC 299 Query: 600 CNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C+LG + +L F F D + + + VR+LDNV+D + + ++ Sbjct: 300 CDLGPV-ILTRFVREPFTPQAFFDLEAFRAAVAVQVRMLDNVLDATVWPLPEQQREAQQK 358 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G G AL LL + YAS ++ A+ + A +ASVELA+E+G++ F Sbjct: 359 RRIGVGFTGLGDALILLGLHYASDAGLQQAEAIARNMRDAAYAASVELAREKGSFPLFNA 418 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI- 772 + + F RLP EL+ ++ G+RNS+ ++IAPT T+ Sbjct: 419 KQYLKSGF-------------------AKRLP-KELRADIRKHGLRNSHLLSIAPTGTVS 458 Query: 773 -ANICGVSQSIDPSYQNLYVKSNMSGD 798 A S I+P++ Y + + D Sbjct: 459 LAFADNASNGIEPAFSWTYTRRKRTAD 485 >gi|196229990|ref|ZP_03128854.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter flavus Ellin428] gi|196226316|gb|EDY20822.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter flavus Ellin428] Length = 159 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/165 (44%), Positives = 101/165 (61%), Gaps = 11/165 (6%) Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 MSG+F N L+ EL+ R LWDE M++DLKY DGS+ I+R+P +LK+++ TAFEI P Sbjct: 1 MSGEFIRTNDHLLRELQNRGLWDEEMLADLKYFDGSVQQIDRVPAELKRLYKTAFEIAPT 60 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W+++ A+ RQKWIDQAQS NL+L E + F+YR+AW GLKTTYYLR ++ KS Sbjct: 61 WILQCAAARQKWIDQAQSTNLWLAESDARTASFMYREAWERGLKTTYYLR-----TLNKS 115 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT-----ECEVCQ 954 + + A +P +S SC+ + CE CQ Sbjct: 116 AIDSSNRDRRATTAPEPKRE-YSAEEKQSCSIEAMRNGGTCEACQ 159 >gi|38707873|ref|NP_944991.1| Ribonucleoside triphosphate reductase, alpha chain [Enterobacteria phage Felix 01] gi|33340476|gb|AAQ14827.1| putative ribonucleoside triphosphate reductase alpha chain [Enterobacteria phage Felix 01] Length = 744 Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 184/805 (22%), Positives = 326/805 (40%), Gaps = 108/805 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I +GT++SF+ +RL A + + V E K +Y+G + ++ A+I Sbjct: 5 IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMI--- 59 Query: 207 RTLIEKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 ++K+ Y+ + R LL + +E K P T F + +E + Sbjct: 60 DVCVDKQTQEYSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNME---R 105 Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A L + MD+ +L YL + + +D ++ Y L+ D+Y + G E PQ Sbjct: 106 AGLWEK--MDYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFM 163 Query: 321 FMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 FM G+A+K EK+ + ++ Y LS TP L +SC L Sbjct: 164 FM----GMAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLI 219 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D + A + + G+G R +G I + G +P+ K+ + Sbjct: 220 KANDTAESLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVR-S 277 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 +V N+ R G+ + +E+ L L+ T +R ++M+ + D F + V Sbjct: 278 SVEANKQKSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQ 337 Query: 495 QNAGWTLFSPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + W LFS + L+D++ EF +A + A +K R++ A + + + Sbjct: 338 YDTDWLLFSYKDAPKLYDMFYTASADEFAMAVGH----AVHSGVK-HRRVKAREIAKLFI 392 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------AVCNL 602 + TG + F + N +P + + SNLC EI L E AV Sbjct: 393 QQRYATGRVYPFFTNNANTHTPFKEP--LKMSNLCMEIVLPVYGFEKETDLYRDDAVKED 450 Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 G + L LA + D+ A A+ ++D+VID+ + + R++G+GL Sbjct: 451 GEVALCFLASLVAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGL 510 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 L ++ Y+S E E S++ AS+ LA+ERG K + + +G Sbjct: 511 TNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGW 570 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVS 779 P + + + + + R WD+L +R+K G+RNS A P + + + Sbjct: 571 VPPKTANKKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTT 626 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + P + K + +G+ + +PD Sbjct: 627 NGLYPIRDFILTKKSATGNVLFI----------------------------------VPD 652 Query: 840 --DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM-- 895 +LK ++ A++ID +I+ + QK+ QA S + Y+D KK+ +++ Sbjct: 653 YEELKYVYEIAWDIDTFDMIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYA 712 Query: 896 ---GLKTTYYLRSRSATSVEKSTLK 917 G+KT YYL SR V KS L+ Sbjct: 713 NSVGMKTMYYLNSR--IGVGKSALQ 735 >gi|218681258|ref|ZP_03529155.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli CIAT 894] Length = 441 Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 114/379 (30%), Positives = 177/379 (46%), Gaps = 28/379 (7%) Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332 F+ V D Y R F F +LG Y Y L +G R +E + VA+ LA + Sbjct: 75 FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 134 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391 E A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 135 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 191 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Y Sbjct: 192 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 251 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ +PD+ + N LFSP +V ++ Sbjct: 252 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDISFELARNNEDMYLFSPYDVERVY 311 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + E + + E AD K +KI A ++ + + FE+G+P+I F+D N + Sbjct: 312 GVPFTEISVTEKYREMVADARISK--KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRAN 369 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + + CNLGS+N+ A + F Sbjct: 370 PV--AGRISMSNLCSEILQVSEASDYNDDLSYKHLGKDISCNLGSLNIAAAMDSTDF--- 424 Query: 620 KLASTIRTAVRVLDNVIDI 638 TI T++R L V D+ Sbjct: 425 --GKTIETSIRALTAVSDM 441 >gi|269975272|gb|ACZ55496.1| ribonucleoside triphosphate reductase alpha chain [Staphylococcus phage SA1] Length = 744 Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 184/805 (22%), Positives = 326/805 (40%), Gaps = 108/805 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I +GT++SF+ +RL A + + V E K +Y+G + ++ A+I Sbjct: 5 IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMI--- 59 Query: 207 RTLIEKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 ++K+ Y+ + R LL + +E K P T F + +E + Sbjct: 60 DVCVDKQTQEYSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNME---R 105 Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A L + MD+ +L YL + + +D ++ Y L+ D+Y + G E PQ Sbjct: 106 AGLWEK--MDYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFM 163 Query: 321 FMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 FM G+A+K EK+ + ++ Y LS TP L +SC L Sbjct: 164 FM----GMAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLI 219 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D + A + + G+G R +G I + G +P+ K+ + Sbjct: 220 KANDTAESLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVR-S 277 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 +V N+ R G+ + +E+ L L+ T +R ++M+ + D F + V Sbjct: 278 SVEANKQKSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQ 337 Query: 495 QNAGWTLFSPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + W LFS + L+D++ EF +A + A +K R++ A + + + Sbjct: 338 YDTDWLLFSYKDAPKLYDMFYTASADEFAMAVGH----AVHSGVK-HRRVKAREIAKLFI 392 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------AVCNL 602 + TG + F + N +P + + SNLC EI L E AV Sbjct: 393 QQRYATGRVYPFFTNNANTHTPFKEP--LKMSNLCMEIVLPVYGFEKETDLYRDDAVKED 450 Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 G + L LA + D+ A A+ ++D+VID+ + + R++G+GL Sbjct: 451 GEVALCFLASLVAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGL 510 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 L ++ Y+S E E S++ AS+ LA+ERG + + + +G Sbjct: 511 TNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMQFTKYPEGW 570 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVS 779 P + + + + + R WD+L +R+K G+RNS A P + + + Sbjct: 571 VPPKTANRKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTT 626 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + P + K + +G+ + +PD Sbjct: 627 NGLYPIRDFILTKKSATGNVLFI----------------------------------VPD 652 Query: 840 --DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM-- 895 +LK ++ A++ID LI+ + QK+ QA S + Y+D KK+ +++ Sbjct: 653 YEELKYVYEIAWDIDTFDLIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYA 712 Query: 896 ---GLKTTYYLRSRSATSVEKSTLK 917 G+KT YYL SR V KS L+ Sbjct: 713 NSVGMKTMYYLNSR--IGVGKSALQ 735 >gi|24943147|ref|NP_733909.1| ORF55 [Callitrichine herpesvirus 3] gi|13676698|gb|AAK38264.1|AF319782_58 ORF55 [callitrichine herpesvirus 3] Length = 802 Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 168/675 (24%), Positives = 264/675 (39%), Gaps = 117/675 (17%) Query: 287 YERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVA------------MGLALKET 333 Y+R YL YD Y + +G +P A+ MRVA M LA+K Sbjct: 91 YDRLLGRGYLSALRYYDTYLNVTTDGVYESIPHAY-MRVAAFCASITLHFEGMRLAMKAM 149 Query: 334 EKEKRAV-----EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGA 386 + F+ L+ CSTP L ++G R L+SCF+ + + + Sbjct: 150 CPHLSDILSIFDYFFEHLTLQTVCCSTPILRSAGIRKQILASCFIMSPRMESEAAVNLAM 209 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +++ L ++ G+G +G G +GK G++ LK+ N N KR Sbjct: 210 MRDLGRLLQHKSGVG--------MGVTDFGRDGKHIGLL--LKMVNSHVEYHNYANKRPV 259 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504 +V A++E WH V +FL+ + ++ R + T IP +F K + + W LF P Sbjct: 260 SVAAFMEVWHSQVFKFLEAK--VPENPERCAGIFTGLCIPHMFFKLYKEKPWSFWHLFEP 317 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 L LYG+EFE Y R G K + + +L ++ + G P+I K Sbjct: 318 QNAGRLESLYGEEFE---REYYRLIKEG--KSYGSVPIKSLMFSIVNSAIKAGSPYILLK 372 Query: 565 DPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL---------------- 607 + CN + G + + NLC E+ L S +E AVCNL S+ L Sbjct: 373 EACNEHYWRDLSGEAMSAGNLCAEV-LQPSRDEIAVCNLASVCLPRCLTGPLTTGPVHGL 431 Query: 608 -----------------------LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 F L ++ AV +++ I T E Sbjct: 432 MGPERKSGHELLRGLQETYDPIEAVDLPTGDFSLKILRDAVQCAVFLVNCAIQAGSPTWE 491 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + ++G+G+ G L Y P + + E + F A+ S +A+ Sbjct: 492 ARDVA-----SMGIGVQGLADVFSALGWHYTDPSSRALNSRIFEEMYFTALCTSNTIAEH 546 Query: 705 -RGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 R +S F S + G F P L EV W+ L R+K G+ Sbjct: 547 SRRMFSGFSRSKYASGWFHWHDWPDTITSLEPEV-------------WETLAGRIKEHGL 593 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 NS +A+ PTA +A + GVS S P + N K + N L+ D +E Sbjct: 594 FNSQFIALMPTAGVAQLTGVSDSFYPFFANASTKVTSKEEALRPNQTFWRHLRV-DHANE 652 Query: 819 AMISDLKYHDGSIGNIERIPDDLK---KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 A+ K +E +P+ L+ I TAF+ LI + R ++DQ+QSL L Sbjct: 653 AVRVGCK--------VEAMPEPLRTHYSIFKTAFDYPQEDLIRMSRDRAPFVDQSQSLTL 704 Query: 876 YLDEPSGKKLDFIYR 890 +L E + + R Sbjct: 705 FLKERDASRASMLVR 719 >gi|91776891|ref|YP_546647.1| ribonucleoside-diphosphate reductase [Methylobacillus flagellatus KT] gi|91710878|gb|ABE50806.1| Ribonucleoside-diphosphate reductase [Methylobacillus flagellatus KT] Length = 719 Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 130/512 (25%), Positives = 229/512 (44%), Gaps = 51/512 (9%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRH--PQLSSCFLTT- 375 + RVA LA E +EKR++ F L + + + N+G + P S+ T Sbjct: 52 YKRVARALADVEETEEKRSLWFEKFLWALRRGAIPAGRITSNAGAQEHKPATSTINCTVS 111 Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + GI + E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 112 GIVEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDK 171 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA A + H DV +F+ ++ G R N + I FM+ V Sbjct: 172 MCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKREAG----RLRQFNLSTLITREFMEAV 227 Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKIS 541 +A W L P ++ D H + +E+ + + R++D G++ +V++ I Sbjct: 228 KTDAEWKLAFPVTAREAEQDKLDLDDEHAVVWREWPVKDKYLTRESD-GKVACRVYKTIK 286 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LW +++ ++ P D N + + + ++N C E L C Sbjct: 287 AQRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWYCENIRATNPCGEQPLPP----YGACL 342 Query: 602 LGSINLLAH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGSINL F + FD+D+ + R+LDNV++IN +++ + R Sbjct: 343 LGSINLTKFVREPFTDKAYFDWDEYREVVAIFTRMLDNVVEINGLPLQQQRDEIARKRRH 402 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YS 709 G+G +G S L +L + Y ++++ +E + ++ V+LA+E+G + Sbjct: 403 GMGYLGLGSTLTMLRMKYGEADSLQFTEEVTKVMAEVGWEVGVQLAEEKGPAPIMEEEFE 462 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMA 765 L + D I L +V+ ++ M R SR P L+KR+ G R S+ + Sbjct: 463 ITPDLLSKRPEMAKDGIKLGDKVKGKVLMGRYSRYLQQFP-AALRKRIAETGARFSHHSS 521 Query: 766 IAPTATI----ANICGVSQSIDPSYQNLYVKS 793 IAPT TI AN S I+PS+ + Y ++ Sbjct: 522 IAPTGTISLSLAN--NASNGIEPSFAHHYSRN 551 >gi|71835949|gb|AAZ42350.1| ribonucletotide reductase large subunit [Caenorhabditis remanei] Length = 214 Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 123/220 (55%), Gaps = 11/220 (5%) Query: 592 SSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 S+ +E AVCNL SI L + +FD+ KLA + + L+ +ID+N + +E+A+ SN Sbjct: 3 SAPDEIAVCNLASIALNRYVTPEKKFDFKKLAEVTKVITKNLNKIIDVNYYPVEEARNSN 62 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IGLG+ G L+ P+ S +A ++ E I + A+ AS ELA+ G YS+ Sbjct: 63 MRHRPIGLGVQGLADCFMLMRYPFTSKQARDLNKRIFETIYYAALEASCELAERDGPYST 122 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++GS +G D G+ T + W L+K++ T G+RNS MA PTA Sbjct: 123 YEGSPVSKGQLQFDMWGVTP----------TDQCDWAALRKKIATHGIRNSLLMAPMPTA 172 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + A I G ++SI+P N+Y + +SGDF +VN ++ +L Sbjct: 173 STAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDL 212 >gi|83642897|ref|YP_438185.1| ORF61 [Ovine herpesvirus 2] gi|61971011|gb|AAX58096.1| ORF61 [Ovine herpesvirus 2] Length = 785 Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 144/611 (23%), Positives = 255/611 (41%), Gaps = 79/611 (12%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSG 398 F++ L+ C+TP + ++GTRH L+SCFL + PD + LQE L Sbjct: 169 FFSPLAQQLVCCATPIMRSAGTRHANLASCFLMS-PDLSSEANTTTALLQELTSLLSVKS 227 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G D T G GKS V L + + N R +V AY+E WH Sbjct: 228 GVGCDVTSF--------GHGGKS--VQSCLSLIDAQVEYFNDQNPRPVSVAAYMEVWHSQ 277 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT--QNAGWTLFSPDEVSDLHDLYGK 516 ++EFL ++ ++ R + IP LF + N W LFSP++ +L LYG+ Sbjct: 278 IQEFLSVK--LPENPNRCASIYQGLCIPSLFFDKCLTDSNQPWYLFSPEDAGNLPHLYGE 335 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EF+ YE R E + ++ +L ++ + +TG P+I +KD CN ++ Sbjct: 336 EFKEEYERLVR-----ERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDACNAHHWKEMR 390 Query: 577 G-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------------------------ 611 G + S+NLC E+ + + + CNL ++ L Sbjct: 391 GQAIASANLCAEV-IQYPGRDVSTCNLANVCLPMCLISTPVDPRAPSGQNYSGEVVKSEA 449 Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +N F L + AV +++ ID E ++ R++G+G+ G + Sbjct: 450 VSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRGQR-ERSMGIGVHGLADVFAEM 508 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-G 727 Y P A + + E + + A+ S + + G + ++ S +GVF + G Sbjct: 509 GYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYEESKLSRGVFHWEGWDG 568 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + + W L + G+ NS +A+ PT + + G ++S P + Sbjct: 569 VKLSIPEH---------EWSSLARSCVHSGVYNSQFVALMPTVGSSLLTGYAESYYPFFA 619 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA- 846 N+ K + + N + + DL + G++ +P L++ ++ Sbjct: 620 NVSSKVSSKEEIMKPNVTFWKRVSEEDLHTVRVYG---------GDVALLPSPLREKYSL 670 Query: 847 --TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT- 900 +AF+ + A R ++DQ+QS + YL E S K L + + GLKT Sbjct: 671 FLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLILAGYAHGLKTIM 730 Query: 901 YYLRSRSATSV 911 YY + + +++ Sbjct: 731 YYCKVKKQSTM 741 >gi|212550980|ref|YP_002309297.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549218|dbj|BAG83886.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 867 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 172/706 (24%), Positives = 294/706 (41%), Gaps = 124/706 (17%) Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALK 331 M F+ VY ++ L Y F + L ++ D+Y L N G E P R+A + Sbjct: 1 MTFEEVYKSS-LDY---FCGDELAAKVFVDKYALKSNKGEYFESTPNEMHQRIAREIVRI 56 Query: 332 ETEKEKRAVEFYNLL---SSFHFMC-STPTLFNSGTRH--PQLSSCFLTTVPDDLYG-IF 384 E + + N+L S F+++ +F G + LS+CF+ D YG I Sbjct: 57 EQKYPNPILTEKNILEVISDFNYLIPQGGNMFGIGNSYQLTSLSNCFVIGNRTDSYGGIM 116 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 +E L K GG+G+D + +R G+ ++ + S G++PF++ +++ V Q G+R Sbjct: 117 RTDEEQIQLMKRRGGVGHDLSHIRPRGSPVNNSAITSTGMVPFMERYSNSTREVAQEGRR 176 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 GA+ + H ++E F+D + G + N + + D FM+ V N + Sbjct: 177 -GALMLSMSVEHPEIESFIDAKIEEG----KVTGANISVKLTDEFMRAVESNRSFI---- 227 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + F I EN + + ++I A LW K++ +++ P + F Sbjct: 228 -----------QRFPIDSENPQ---------IIKEIDAKDLWNKIIHNAWQSAEPGVLFW 267 Query: 565 DP--------CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--- 613 D C I S G V S+N C EI L C L +INL ++ Sbjct: 268 DTILRESIPDCYIDS---GFGTV-STNPCGEIPLCPYDS----CRLLAINLYSYVKQPFK 319 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTI------------------------EKAK 647 +FD+D + A R++DN++D+ I EK + Sbjct: 320 KEAEFDFDLFEEHVALAQRMMDNIVDLEVEKIDAILMKIISDYESDEIKHTEQLLWEKIR 379 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 R IG+G+ L L Y + EA A+ + ++ ASVE+A+ERGA Sbjct: 380 HKTLIGRRIGIGITAEGDMLAALGFRYGTEEATNFAERIQKVLALSVYRASVEVAKERGA 439 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + F L F I L EV +L + ++ G RN C+ IA Sbjct: 440 FEIFNIELEKNNPF----IHRLKEVDSQLIED-------------MQQFGRRNIACLTIA 482 Query: 768 PTATIANICGVSQSIDPSYQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 PT T + + + I+P + +Y K N S + T ++ V+E+ D W E + Sbjct: 483 PTGTTSLMSQTTSGIEPVFLPVYKRRRKVNPSDEITKID--FVDEMG--DSWVEYTVFHH 538 Query: 825 KY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 K+ + + +R D L +T+ ++D + ++ R Q+W+D + S Sbjct: 539 KFVKWMEVQGYPTTRKYAQREIDALVAKSPYYKSTSNDVDWLQKVKMQGRIQRWVDHSIS 598 Query: 873 LNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + + L + ++L +++Y +AW G K R S V +T K Sbjct: 599 VTINLPNETKEELVNYLYIEAWKSGCKGCTVYRDGSRNGVLVTTSK 644 >gi|253583701|ref|ZP_04860899.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251834273|gb|EES62836.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 754 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 145/578 (25%), Positives = 261/578 (45%), Gaps = 83/578 (14%) Query: 341 EFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 E ++++ F+ + L N G R S+C++ P+D L IF ++ A Sbjct: 42 ELKEMIANKEFIFAGRILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYS 101 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 Y GG G D + +R G+ ++ + + G I F+++ N T + Q G+R GA+ ++ Sbjct: 102 YGGGCGVDISKLRPRGSEVNNSAKHTTGSISFMELYNLTTDIIGQKGRR-GALMISIDVN 160 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DV EF+ ++ D + N + + FMK V + + Sbjct: 161 HPDVSEFISIK----SDLNKIQKANISVRVDANFMKAVIEGMQFV--------------- 201 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSP 572 EF + D GE+ V ++I A L++++ ++ P I F D N+ S Sbjct: 202 TEFLVE--------DTGEV-VTKEIDARKLFKELARQNWKFAEPGILFWDRISKWNLLSE 252 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +N C E L + C LGS+ L +F++D+LA ++ +V+ L Sbjct: 253 DEEFEYA-GTNPCAEEPLPAGGS----CLLGSLILPTFVEGKEFNFDRLAKVVQKSVKAL 307 Query: 633 DNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 ++V+D + H +E+ ++S R IGLG++G L + + Y SPE++E D+ + I Sbjct: 308 NDVLDEGLPLHPLEEQRESVRDWRQIGLGILGVGDLLIKIGMKYGSPESLEFCDKIAKVI 367 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 +A+ AS LA++ GAY +K D + ++ E + S E Sbjct: 368 VDNALKASALLAKDFGAYPKYKA----------DKV-----LKSEFLLENASI----ETL 408 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + ++ G+RNS + IAPT +I + S I+P++ YV+ S L Sbjct: 409 ELIEKYGLRNSQLLTIAPTGSIGTMLETSTGIEPNFAFSYVRKTES-------------L 455 Query: 811 KQRDLWDEAMISDLKYH--DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 D++ + I K + + +I + E DL + TA ++P I+ QK ID Sbjct: 456 HGEDVFYKVFIPIAKKYMEENNITDEE----DLPEYFVTAQSLNPYDRIKMQGVWQKRID 511 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + S + L ++ S ++++ +Y +AW GLK R+ Sbjct: 512 ASISSTINLVNKVSVEEVEKLYLEAWKNGLKGMTIYRA 549 >gi|83816105|ref|YP_444446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Salinibacter ruber DSM 13855] gi|83757499|gb|ABC45612.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Salinibacter ruber DSM 13855] Length = 894 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 139/549 (25%), Positives = 230/549 (41%), Gaps = 78/549 (14%) Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 ND +E + + E G Y G+ +P ++ R A +A E + + F Sbjct: 44 NDDIFETEISEEVYGQNYQY--------GTDDRVPDTWY-RNARAMAQVEDDTDMWTQRF 94 Query: 343 YNLLSS-------FHFMCSTPTLFNSGTR--HPQLSSCFLTTVP----DDLYGIFGALQE 389 Y LLS F F N+GT L +CF++ D + I L Sbjct: 95 YQLLSGKGLGTGPFPFTPGGRIFANAGTGLGKATLINCFVSGFQGHDQDSMDEIQAELTR 154 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK------ 443 A + GG G +R GA I G + G + L V N A + G Sbjct: 155 QAKILASEGGYGFCAHIMRPRGARIGGVGSMTPGAVQMLDVWNKQAATIVAGSGMKSDRD 214 Query: 444 ------RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 RKGA + WH D+ EF++ ++ G R H N + I D FM+ V + Sbjct: 215 DVKDKIRKGAQMVTMGIWHPDIIEFIEAKQEPG----RLHKFNMSVLITDEFMEAVKNDD 270 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS--------AVALWRKM 549 W L PD + + Y + ++ + Y+ + G +K + + A +W ++ Sbjct: 271 TWALRFPD-YENEKEFYKQHWDGNLKAYQEKG--GTVKTWTDPATGEPAVYEAREIWNRI 327 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-- 607 + + P + F D N + +V ++++N C E L VC LG++N+ Sbjct: 328 MDSTYNRNEPGVIFVDTINKENNLGYVEHINATNPCGEQVLPVG----GVCLLGNLNVTQ 383 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 L DYD + + AVR LDNV D++ +E+ +++ R IGLG G SAL Sbjct: 384 LVDREAGTIDYDLVDDLVPLAVRFLDNVNDLSYVPLEEQQRNLQEKRRIGLGHYGDGSAL 443 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 ++ Y S E + E E ++ A AS LA+E+GA+ F Sbjct: 444 MMMKTRYGSEEGARVMREFQEHLANQAYQASARLAEEKGAFPLFD--------------- 488 Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785 +DE L+ RL D+ K+ + +G+RNS+ ++I PT + + S I+P Sbjct: 489 -----KDEYLSSPFVQRLS-DKTKEMIGDLGLRNSHLLSIQPTGNTSTLGNAPSSGIEPV 542 Query: 786 YQNLYVKSN 794 + + Y++++ Sbjct: 543 FMHSYIRTS 551 >gi|282877838|ref|ZP_06286650.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella buccalis ATCC 35310] gi|281300049|gb|EFA92406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella buccalis ATCC 35310] Length = 861 Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 170/694 (24%), Positives = 299/694 (43%), Gaps = 116/694 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLAL--KETEKEKRAV 340 LKY FA + L ++ ++Y + + I + P+ R+A +A K+ + A Sbjct: 17 LKY---FAGDELAARVWVNKYSMKDSFGNIYEKSPEDMHCRIANEIARIEKKYKNPMSAR 73 Query: 341 EFYNLLSSFHFMCSTPTLFNS-GTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394 E ++LL F ++ + G H LS+CF+ + D YG I +E L Sbjct: 74 EIFDLLDHFKYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLM 133 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ ++ + S G++PF++ +++ V Q G+R GA+ + Sbjct: 134 KRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 192 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + I D FM+ T + Y Sbjct: 193 KHPDSEAFIDAKMTEG----KVTGANVSVKIDDAFMEAATSDKP---------------Y 233 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 ++F + D E V R+ISA ALW K++ +++ P + F D S P Sbjct: 234 VQQFPV---------DGDEPLVKREISAKALWEKIVHNAWKSAEPGVLFWDTITRESIPD 284 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTI 625 + + S+N C EI L C L SINL ++ + FD DK + Sbjct: 285 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLSINLYSYVVHPFTKDAYFDMDKFRKHV 340 Query: 626 RTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLM 661 + A R++D+++D+ H EK K + R G+G+ Sbjct: 341 QIAQRIMDDIVDLELEKIDRIMQKIQQDPQSDEVKGSEYHLWEKIKHKSSQGRRTGVGIT 400 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + + + Y +PEA E + + ++ A +SV +AQERGA++ F S F Sbjct: 401 AEGDMIAAMGLRYGTPEATEFSVNVHKNLALSAYRSSVTMAQERGAFAVFDASREKNNPF 460 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 L + + + +L+K G RN C+ IAPT T + + + Sbjct: 461 L-------------LRIKEADQQLYADLQK----YGRRNIACLTIAPTGTTSLMTQTTSG 503 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD-----GSIGNIE 835 I+P + +Y + ++ + T V+ V+E+ D ++E ++ K+ + G + Sbjct: 504 IEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFLEWMNVNGIDSTKK 561 Query: 836 RIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 +++ K+ ATA ++D + ++ QKW+D + S+ + L + L + Sbjct: 562 YTQEEIDKLVAQSPYYKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNR 621 Query: 888 IYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLK 917 +Y +AW G K T Y SR+ SV KS K Sbjct: 622 LYVEAWKSGCKGCTIYRDGSRAGVMISVSKSEKK 655 >gi|189490616|ref|YP_001957186.1| hypothetical NrdA [Pseudomonas phage 201phi2-1] gi|164609681|gb|ABY63290.1| hypothetical NrdA [Pseudomonas phage 201phi2-1] Length = 764 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 198/820 (24%), Positives = 331/820 (40%), Gaps = 109/820 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205 I+ DGT FN+ + E L+D V ++ ET + + + +S + ALI Sbjct: 5 IIKLDGTQEPFNAAKANRWCEWGTENLKDKVDWSSIVMETIQTLPETVSSQAFQMALI-- 62 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 TL + ++ R + + + T KA H MQ ++G+ Sbjct: 63 ENTLSHRTWSHYLFAGRLYAVWIHKHLYGTDGIPTVKALHTRMQ-----------KDGLM 111 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMR 323 +L + + D + + +K++ DF + L + +Y L + G+ E PQ ++R Sbjct: 112 VKLKYNTQ---DYLKIEKFIKHDLDFEQPHFALHQIRKKYALGNRVTGAEYESPQFTYIR 168 Query: 324 VAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +AM LA E + + V +FY L + TP N GT H +SC L V D+ Sbjct: 169 MAMALAENEPKATRLQVVRDFYELFAYKKLSAPTPNYINLGTSHRGFASCCLFAVGDNGT 228 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 + + + S G+G + R +G + G G + + VA Q Sbjct: 229 SLALGNYIGDKMTQMSAGIGVN-IMTRAVGDAVRGGLFAHHGKKKYYDAMGKSIVANVQA 287 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R GAV + E++ +VE LR RR DM+ A F K+ N Sbjct: 288 G-RGGAVTCFFESFDQEVEMIQGLRNPLSTPDRRNRDMHFAMLTNRFFAKKAASNEQIFA 346 Query: 502 FSPDEVSDLHD-LYGK---EFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFE 555 F+P DLH+ YGK EF YE YE+ + F K +SA + R+ L E Sbjct: 347 FNPYTAPDLHEAFYGKDIEEFIRLYEKYEKD------ESFTKHWMSARDILRRSLKEAQE 400 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------EETAVC 600 TG ++ D N +P + +HSSNLC EI +S E A C Sbjct: 401 TGVAYVGQIDEMNRHTP--FLDPIHSSNLCMEIAEPTSPYYEMEDLVSREDHGRGEIATC 458 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 +L ++++ N +Y+K+ A++++D I + + I + + + G+G+ Sbjct: 459 SLAAVSV--ENIENDKEYEKVC---YYALKMIDYCILNSTYVIPHLEFTAKQRMSAGVGM 513 Query: 661 MGFQSALHLLHIPYASP----EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 MG + L + Y S E IA+ M F+ I AS+ +++ERG + W Sbjct: 514 MGLATHLAKNGLDYTSNAGKREIHWIAERHMYFM----IKASIAISKERGLAPWIHKTKW 569 Query: 717 DQGVFPIDSIGLLAE-VRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIAN 774 G PID+ + + D + W++L+ V G+ +S +A P + + Sbjct: 570 PAGWLPIDTYQRAVDNIIDPKGSSFDYTYNWEKLRAEVVANGGIAHSVLIAYMPGESSSK 629 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 G + SI P + K++ + N L Y G Sbjct: 630 ALGGANSIYPVRRLTLSKNDQN-----------NHL---------------YWAAPYG-- 661 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-----LDEPSGKKL--DF 887 DD + A++I LI+ + QK+ DQ S + Y +E +L D+ Sbjct: 662 ----DDPSVKYQFAWDIPTKDLIDCYAIFQKFTDQGISADFYRRIVGTEEIDSNELLKDY 717 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLK-GVDGKLNAV 926 Y MG+KT YY + + ++ ++ +D NA Sbjct: 718 FYMVK--MGMKTRYYFNTETTANLSLEAMESAIDNSGNAA 755 >gi|323448023|gb|EGB03927.1| hypothetical protein AURANDRAFT_6442 [Aureococcus anophagefferens] Length = 212 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 14/220 (6%) Query: 592 SSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 ++S+E AVC L SINL H FD+ KL T + L+ V+D+N + +E+AK Sbjct: 3 TASDEIAVCTLASINLTVHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEEAK 62 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 SN HR +G+G+ G AL L PY S +A I + E I F A+ AS++LAQE G Sbjct: 63 SSNLKHRPVGIGVQGMADALAKLRHPYESDDAKRINRDVFETIYFGAMEASIDLAQELGP 122 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y S+ GS QG+F D L V+ + R W+ L+ R+ G RNS +A Sbjct: 123 YDSYAGSPTSQGLFQFD----LWNVKP------SDRWDWEGLRARLGEHGCRNSLLLAPM 172 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 PTA+ A I G ++S +P N+Y + ++G+F VVN +L+ Sbjct: 173 PTASTAQILGNNESFEPFTSNMYTRRVLAGEFAVVNKYLL 212 >gi|15678679|ref|NP_275794.1| ribonucleotide reductase, large subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|2621734|gb|AAB85157.1| ribonucleotide reductase, large subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 703 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 153/310 (49%), Gaps = 47/310 (15%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGS+NL + +++KL TI AV LDNVID+N + + ++ R IGLG Sbjct: 411 CNLGSVNLSLMVGPSGINWEKLRRTIHVAVHFLDNVIDVNSYPLRPVEEMTLRTRKIGLG 470 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF L L IPY S A+E+A M FIS A AS+ELA+ERG++ FKGS+WD Sbjct: 471 VMGFADMLIKLGIPYNSVAALEVAGRVMSFISSEARRASMELARERGSFPEFKGSIWDIQ 530 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 F MRN+ IAPT +++ I G S Sbjct: 531 GFEC----------------------------------MRNATLTTIAPTGSLSIIAGTS 556 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSF---LVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 I+P + + ++ + F ++ + L +R L EA+ S GS+ + Sbjct: 557 SGIEPLFAVSFTRNILGRSFHELHPLFKTMAGRLDKRSL--EAIES-----RGSLRGVPG 609 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWL 894 +P ++++ TA EIDP++ ++ + Q+++D A +++NL D S ++ ++R A Sbjct: 610 VPARIRRLFVTAHEIDPVFHVKMQAAFQRYVDNAVSKTVNLPADS-SPADVERVFRAAHE 668 Query: 895 MGLKTTYYLR 904 +G K R Sbjct: 669 LGCKGVTVYR 678 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 145/324 (44%), Gaps = 47/324 (14%) Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLA-LKETEKEKRAVE---FYNLLSSFHFM 352 L++L +RY L G + E P+ F RVA +A E + AV FY+++ + F+ Sbjct: 9 LKVLEERYLLRGEGGEVVETPEEMFRRVARAVASADEAYGDDPAVAEEAFYSVMGNLEFL 68 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+GT QLS+CF+ V D + IF +L++ A++ K GG+G ++ +R G Sbjct: 69 PNSPTLMNAGTPINQLSACFVLPVEDSIDSIFSSLRDMAIIHKSGGGVGFSFSRLRPRGD 128 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F+++ + + QGG+R+GA L H D+ F+D + G Sbjct: 129 IVASTMGVASGPVSFMRIFDVAVDVIKQGGRRRGANMGVLHVSHPDIFSFIDAKSREGPL 188 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R + N + +PD FM D DL + E D Sbjct: 189 R----NFNLSVAVPDEFMD-------------DRPVDLINPRNGEV----------VDSV 221 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E +V K A WR +G P I F+D N +P +G + ++N C Sbjct: 222 ESRVILKRIVEAAWR--------SGDPGILFEDRINRYNPTPQLGRIEATNPCV------ 267 Query: 593 SSEETAVCNLGSINLLAHFANNQF 616 S +T V G +A F Sbjct: 268 -SGDTIVMTSGGPRTVAELEGKPF 290 >gi|332830258|gb|EGK02886.1| hypothetical protein HMPREF9455_01136 [Dysgonomonas gadei ATCC BAA-286] Length = 848 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 170/713 (23%), Positives = 290/713 (40%), Gaps = 119/713 (16%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326 + + + FD Y A L Y F + L ++ ++Y L I + P+ R+A Sbjct: 1 MAQKVYTFDEAYNAA-LNY---FNGDELAAKVWVNKYALKDAAGNIYEQSPEDMHWRLAN 56 Query: 327 GLALKETEKEKRAV--EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV--PDD 379 + E++ EK E Y+L F ++ S T + + LS+CF+ + P D Sbjct: 57 EIGRIESKYEKGLTNKELYDLFDHFKYIVPQGSPMTGIGNDFQIASLSNCFVIGLNGPSD 116 Query: 380 LYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 YG I +E L K GG+G+D + +R G+ + + S G++PF++ +++ V Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G+R GA+ + H D E F+D + G + N + I D FM+ V + Sbjct: 177 AQDGRR-GALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVDGSK 231 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 +T P D + I A LWRK++ +++ Sbjct: 232 YTQQYP------------------------IDSSNPTTVKDIQATELWRKIVHNAWKSAE 267 Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613 P + F D S P + + S+N C EI L C L +INL ++ N Sbjct: 268 PGVLFWDTIIKESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323 Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEK 645 FD++ + + A R++D++ID+ H EK Sbjct: 324 FKDDAHFDFELFSKHVGLAQRIMDDIIDLETEKIDKILQKIDDDPETDEVRWPERHLWEK 383 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + R G+G+ + + + Y + EA A+E ++ A +SVELA+ER Sbjct: 384 IRTKTLQGRRTGVGITAEGDMIAAMGLRYGTEEATAFAEEVHRVLAVAAYRSSVELAKER 443 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ F + F I LAEV +L K ++ G RN C+ Sbjct: 444 GAFEIFDFKREKKNPF----INRLAEVDPQLI-------------KDMEKYGRRNIACLT 486 Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 +APT T + + + I+P + +Y + ++ + V V+E D W+E ++ Sbjct: 487 VAPTGTTSLMTQSTSGIEPVFMPVYKRRRKVNPNDKEVRVDFVDE--NGDSWEEYIVFHH 544 Query: 825 KY------------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 K+ + +E + + AT+ ++D + ++ R QKW+D + S Sbjct: 545 KFVTWMESKGYPTSKKYTNEEVETMVAESPYYKATSNDVDWLQKVKMQGRIQKWVDHSIS 604 Query: 873 LNLYLDEPSGKKLDFI---YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVD 920 + + L PS D + Y +AW G K T Y SR+ V K D Sbjct: 605 VTINL--PSDVSEDLVNDLYIEAWKSGCKGCTVYRDGSRAGVLVAADNKKQAD 655 >gi|329960252|ref|ZP_08298694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides fluxus YIT 12057] gi|328532925|gb|EGF59702.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides fluxus YIT 12057] Length = 845 Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 165/685 (24%), Positives = 293/685 (42%), Gaps = 111/685 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + + E +N Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNGLSSEELFN 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ + +T P + Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLADSFMQAAIEGKPYTQQYPID------------ 239 Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576 E+ VF+K I A ALW+K++ +++ P + F D S P + Sbjct: 240 -------------AEVPVFKKEIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYA 286 Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628 + + S+N C EI L C L +INL ++ N FD++ + A Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFEKHVSLA 342 Query: 629 VRVLDNVIDINCHTIEK----------AKKSNHTHRAI--------------GLGLMGFQ 664 R++D++ID+ IE+ + HT R + G+G+ Sbjct: 343 QRIMDDIIDLELEKIERIMEKIDSDPECEDVKHTERILWQKIYKKSGQGRRTGVGITAEG 402 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L + Y + EA E ++ + ++ +A +SVE+A+ERGA+ + F Sbjct: 403 DMLAALGLRYGTEEATEFSERVHKAVALNAYRSSVEMAKERGAFEIYDTEREKNNPF--- 459 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 -INRLREADPEL---------YEEMKK----FGRRNIACLTIAPTGTTSLMTQTTSGIEP 505 Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHDGSIGNI 834 + +Y + ++ + T V+ ++E D ++E ++ K Y+ Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWMEAQGYNPAKRYTQ 563 Query: 835 ERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890 E + + K AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 564 EEVDAMVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYI 623 Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915 +AW G K R S + V ST Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLIST 648 >gi|167764850|ref|ZP_02436971.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC 43183] gi|167697519|gb|EDS14098.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC 43183] Length = 845 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 174/703 (24%), Positives = 292/703 (41%), Gaps = 117/703 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + + E + Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTSEELFG 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ GK F Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAID-------------------GKPF 232 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 + Y AD K ++ISA LW+K++ +++ P + F D S P + Sbjct: 233 ---VQQYPIDADEPLFK--KEISATDLWKKIVHNAWKSAEPGVLFWDTILRESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALAQ 343 Query: 630 RVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQS 665 R++D++ID+ IE K K + R G+G+ Sbjct: 344 RIMDDIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQKIYKKSGQGRRTGVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L L + Y + EA E A++ + ++ A +SVE+A+ERGA+ + F Sbjct: 404 MLAALGLRYGTEEATEFAEKVHQTVALSAYRSSVEMAKERGAFEVYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYVK--------SNMSGDFT-----VVNSFLVNELKQRDLWDEAMISDLKYH---DG 829 + +Y + +N+ DF ++V K W +A D H D Sbjct: 507 FLPVYKRRRKVNPNDANVHVDFVDETGDAFEEYIVFHPKFV-TWMQAQGYDPAKHYTQDE 565 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFI 888 +++ P AT+ ++D + ++ R QKW+D + S+ + L ++L + + Sbjct: 566 VDALVQKSP----YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRL 621 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 Y +AW G K R S + V ST K D K P P Sbjct: 622 YVEAWKSGCKGCTVYRDGSRSGVLISTKK--DKKEELPPCKPP 662 >gi|319899891|ref|YP_004159619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides helcogenes P 36-108] gi|319414922|gb|ADV42033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides helcogenes P 36-108] Length = 845 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 163/685 (23%), Positives = 295/685 (43%), Gaps = 111/685 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + + E +N Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEIARIEAKYPNALSSEELFN 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL+ F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ + +T P + ++ Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDSFMQAAIEGKPYTQQYPIDAAE--------- 242 Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQ 574 +F+K I A ALW+K++ +++ P + F D ++ + Sbjct: 243 ----------------PIFKKEIDASALWKKIVHNAWKSAEPGVLFWDTILRESVPDCYE 286 Query: 575 HVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628 +G S+N C EI L C L +INL ++ N FD+D + A Sbjct: 287 DLGYRTISTNPCGEIPLCPYDS----CRLLAINLYSYVINPFKSDAYFDFDLFKKHVALA 342 Query: 629 VRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQ 664 R++D++ID+ IE K K + R G+G+ Sbjct: 343 QRIMDDIIDLELEKIERIMKKIDSDPEDEEVKRTELSLWQKIYKKSRQGRRTGVGITAEG 402 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L + Y + EA E +++ + ++ +A +S+E+A+ERGA+ + F Sbjct: 403 DMLAALGLRYGTEEATEFSEKVHKTVALNAYRSSIEMAKERGAFEIYNTEREKDNPF--- 459 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 -INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505 Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHDGSIGNI 834 + +Y + ++ + T V+ ++E D ++E ++ K Y+ Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWMEAQGYNPAKRYTQ 563 Query: 835 ERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890 E I ++K AT+ ++D + ++ R QKW+D + S+ + L ++L + +Y Sbjct: 564 EEIDTMVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRLYV 623 Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915 +AW G K R S + V ST Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLIST 648 >gi|229166286|ref|ZP_04294045.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH621] gi|228617231|gb|EEK74297.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH621] Length = 462 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 125/487 (25%), Positives = 224/487 (45%), Gaps = 61/487 (12%) Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKGA YL +H D+ EFLD +K D++ R ++ +P F + +N + +F Sbjct: 2 QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHP 559 +P V + + + +I E Y+ ++K +K ISA + K+ + E+G+P Sbjct: 62 APYTVFKEYGKHLDDIDID-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYP 118 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINL 607 ++ FK N + P + +G V SNLCTEI +N E + CNLGS+N+ Sbjct: 119 YLMFKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNI 178 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + N + + + + + V D I N T++KA H+ +GLG M L Sbjct: 179 VNVMENKEIR-EAVHAGMEALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYL 234 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----P 722 I Y S EA E A +++++I S+E+A+E+G + F S + G + Sbjct: 235 AKNKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYE 294 Query: 723 IDSIGLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + E +L ++ ++ W LK++V+ G+ NS +AIAPT +I+ + + Sbjct: 295 TTDYSPVTETVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATS 354 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S+ P +V++++ R + + Y + D Sbjct: 355 SVMP---------------------IVSQIESRTYANATTYYPMPY----------LSKD 383 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899 + ++++++ LI+ + Q+ IDQ S LY++ + S ++L Y A GLK+ Sbjct: 384 TFWYYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKS 443 Query: 900 TYYLRSR 906 YY R+R Sbjct: 444 LYYTRTR 450 >gi|288553354|ref|YP_003425289.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pseudofirmus OF4] gi|288544514|gb|ADC48397.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pseudofirmus OF4] Length = 857 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 171/688 (24%), Positives = 276/688 (40%), Gaps = 129/688 (18%) Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRH 365 IE P F R A GLA E + +R +FY+ L + +F+ + L+ +G + Sbjct: 122 IEKPLELFYEQIAKRNATGLASVEEDAARRQESFEQFYSELVNMNFIPAGRVLYGAGAKT 181 Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +C++ V D GI ++ + GG+G + + +R G NGKS G Sbjct: 182 DVTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSG 241 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472 + +L V QGG R+GA L WH D+ EF+ L + T D+ Sbjct: 242 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRFLLEQTNDE 301 Query: 473 RRRTHDMNTANWIP---------------------DLFMKRVTQNAGWTLFSPD--EVSD 509 + R ++ P F +V Q A L + +V++ Sbjct: 302 QIRRLVKEKLSFTPLSPVEEAMYQGIVNFRNVEGQGGFDTKVIQEAEDKLMTGGTYKVNN 361 Query: 510 LHDLYG--------KEFEIAYENYERQADR----------------------GEIKVFRK 539 L G KEF A EN E A R G+++ +R+ Sbjct: 362 PEFLTGANISITLTKEFMEAVENDEEYALRFPDVENYTAEEMESYNETWHEIGDVREWRE 421 Query: 540 ----------ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEI 588 I A LW + + P I F D N + + G V ++N C E Sbjct: 422 MGYGVRTYRLIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGEQ 481 Query: 589 TLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 L S VCNL +INL +A ++DKL T+ VR+ DNVID + +E Sbjct: 482 PLAPYS----VCNLAAINLAEMADKETKTVNFDKLKRTVEVGVRMQDNVIDATPYFLEDN 537 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K R +GLG+MG L Y S + ++ D+ E I+ A S+ELA+E+G Sbjct: 538 TKQAKGERRVGLGVMGLHDLLIYAETVYGSEKGNQLVDQVFETIATTAYRTSIELAKEKG 597 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 ++ G ++ +R+ + ++P D +++ V G+RNS+ + Sbjct: 598 SFPYLIGQNEEE----------TKALREAFINTGYMKKMPED-IREGVLAYGIRNSHLLT 646 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 +APT + + GVS ++P + Y +S G F V + +V E L Sbjct: 647 VAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAGIVEEY-------------LN 693 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--- 882 H E D+L + + E+ P + Q+W+D SL+ ++ P G Sbjct: 694 SHP------EASADELPEWFISTMELSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTV 745 Query: 883 KKLDFIYRQAWLMGLK--TTYYLRSRSA 908 +++ +Y + + G K T Y SR A Sbjct: 746 EQVQAVYERLYRGGAKGGTVYVDGSRDA 773 >gi|226355314|ref|YP_002785054.1| ribonucleoside-diphosphate reductase [Deinococcus deserti VCD115] gi|226317304|gb|ACO45300.1| putative ribonucleoside-diphosphate reductase [Deinococcus deserti VCD115] Length = 996 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 150/590 (25%), Positives = 243/590 (41%), Gaps = 100/590 (16%) Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428 VPDD+ GI GA ++ A AK S D + +R GA I G+ G S G + FL Sbjct: 215 VPDDMAGIIGAARKVAEDAKLSLEPRIDLSSMRPEGAPIKGSGGTSSGPVSFLLEIFDNF 274 Query: 429 -KVANDTA-----------------VAVNQGGKRKGAVCAYLETWHIDVEEFL---DLRK 467 + AN A V QGG R+GA A + H DV +FL DL + Sbjct: 275 LEWANRGAEQSGPINTLRFVYAPVLRVVRQGGTRRGAGMATISIEHPDVLDFLTAKDLDR 334 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE- 526 + T N + + F + W + + EV + L +E + + E Sbjct: 335 EAAEGDIST--FNISILVSSAFWDTLQAGGVWPVAA-QEVPGKYYLARQEGKFSGTLPEL 391 Query: 527 ---RQADRGEIKVF------RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 + D + V+ I A LW ++ + TG P + F D N S +++G Sbjct: 392 PVRAEDDARGVPVYTLRGGKTGIPAQWLWNEIAQHAWSTGEPGLIFNDRVNEFSALKNLG 451 Query: 578 V---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + S+N C EI L C+LG+INL A+ + FDY + +RT VR LD+ Sbjct: 452 ARYEIRSTNPCGEIPLTVGEP----CDLGAINLAAYVKGSDFDYPTFRADVRTCVRFLDD 507 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+D+N +E + ++ R +GLG+MG AL + + Y + + E M + A Sbjct: 508 VLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKMGLRYDNEAGRQAISEIMGALRDEA 567 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 ++ S L QERG Y ++ R P +V Sbjct: 568 VAESERLGQERGVYPVYE------------------------------RHP-----GKVP 592 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV------- 807 RN + +APT T + + GVS I+P + + S +++ V Sbjct: 593 HAPRRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLSSYP 652 Query: 808 --NELKQRDLWDEAMISD-LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + Q D WD +++ + + GS+ + IPD L+++ A +I P+ + Q Sbjct: 653 PASGMAQGDGWDWDKVTEAVSENHGSVVGLPFIPDALQQVFVCAHDIKPLDHVRMQGAVQ 712 Query: 865 KWID----QAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907 + D A SL+ ++ P+ + + Y +A+ G K R S Sbjct: 713 QAFDAEGFAANSLSKTINLPNNATVQDVQDAYTEAYRTGCKGITVYRDGS 762 >gi|332981533|ref|YP_004462974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mahella australiensis 50-1 BON] gi|332699211|gb|AEE96152.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mahella australiensis 50-1 BON] Length = 1112 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 155/315 (49%), Gaps = 43/315 (13%) Query: 600 CNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGSINLL+ + +Y KLA + TAV LDNVID+N + + + +K R Sbjct: 648 CNLGSINLLSVVQPVDGDKWEINYAKLARIVDTAVHFLDNVIDVNLYPLPEIEKMTKRMR 707 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MG+ L L IPY S EA+E+ + M+FI A S ELA++RGA+ +++ S Sbjct: 708 KIGLGVMGWADMLFRLGIPYNSDEAIELGTKLMKFICDRARQQSAELAEQRGAFPAYEQS 767 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +W + K + +RN+ IAPT +I+ Sbjct: 768 IW-----------------------------------KDKGLKVRNATVTTIAPTGSISI 792 Query: 775 ICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I GVS I+P + +V++ M V+ KQR + ++ + H GSI + Sbjct: 793 IAGVSSGIEPLFAISFVRNVMDNTQLPEVHPIFEEVAKQRGFYSAELMRQIA-HQGSIQH 851 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQA 892 ++ IPDD+K++ TA +I P + + + Q++ D A S + + + + + + +Y A Sbjct: 852 MDGIPDDVKRVFVTAHDISPEYHVRMQAAFQRYTDNAVSKTVNFPNSATQEDVRQVYILA 911 Query: 893 WLMGLKTTYYLRSRS 907 + +G K R S Sbjct: 912 YKLGCKGVTIYRDGS 926 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 139/295 (47%), Gaps = 38/295 (12%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350 +++L RY G+ IE P+ F RVA +A ++ + K EFY++++ Sbjct: 8 IKVLEKRYLAKDEQGNIIETPEQMFRRVAHHVAQADSIYDPKVDVSKTEQEFYDIMTELE 67 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+G QLS+CF+ + D + GIF +++ A++ K GG G ++ +R Sbjct: 68 FLPNSPTLMNAGRPLGQLSACFVLPIEDSMEGIFDSVKNAALIHKSGGGTGFSFSRLRPK 127 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ +K+ Sbjct: 128 GATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKKDNS 187 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D + N + I + FM+ V ++ + L P Sbjct: 188 D----ITNFNISVGITEKFMEAVEKDEEYDLIDPHTG----------------------- 220 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ R++ A ++ ++ M + G P I F D N + +G + S+N C Sbjct: 221 ----KITRRLRARQVFDLIVDMAWHNGEPGIVFLDRINKDNVVPALGEIESTNPC 271 >gi|254436965|ref|ZP_05050459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 307] gi|198252411|gb|EDY76725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 307] Length = 492 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 139/554 (25%), Positives = 234/554 (42%), Gaps = 97/554 (17%) Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R+ LS+ F + T+PD + GI L++ A+ + GG+G D++ +R G +HG + ++ Sbjct: 8 RNVTLSNTFVMRTIPDSVDGIMDTLKDGALTMQMGGGVGFDFSTLRPSGTVVHGLDCRAA 67 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + + + + T + G R GA+ A + H D+E F+ + DR R + N + Sbjct: 68 GPLAAMDIFDVTCKMIVSGMGR-GAMMATMRCDHPDIEAFIVAKS----DRSRLRNFNLS 122 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM + + W L E + R++ A Sbjct: 123 VMVTDAFMAAIAADTTWDLV-----------------------------WEGAIMRRLRA 153 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW ++ + P + F D N +P +++ + ++N C E L C L Sbjct: 154 RDLWNAIMKQTYAAAEPGVLFIDKINAANPLRYLENIAATNSCAEQPL----PPNGTCPL 209 Query: 603 GSINLL----AHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 SINL A F + + D +L +R AVR+LDN +D++ +E K+ R IG Sbjct: 210 ASINLAQLVSAPFTPDARLDVVQLRQLVRVAVRMLDNSLDVSRFALEAQKQQAKDQRRIG 269 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS--L 715 +G+ G +A+ +L Y S +AV + M+ I A AS LA+ERG + + L Sbjct: 270 IGVTGVANAIAMLGARYGSSKAVFLLGSWMQTIQNAAYGASALLAKERGVFPRYDADKHL 329 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 +G+ +D +++ V+ G+RN IAPT T + Sbjct: 330 TSRGIQALDP----------------------DVRTLVEQHGLRNGTLTTIAPTGTKSMF 367 Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMI--SDLKYHDGSI 831 G VS I+P + ++++ T N +E + +W A I D D + Sbjct: 368 AGNVSSGIEPMFSTSFLRT-----ITKPNGDKSSERVIDYAVWRFAQIFGPDAPLPDSFV 422 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIY 889 + PDD + A A Q+W+D ++++N D P D IY Sbjct: 423 TVADLSPDDHVAMQAAA---------------QEWVDSGISKTVNCPEDIPFDTFKD-IY 466 Query: 890 RQAWLMGLK--TTY 901 R A+ K TTY Sbjct: 467 RAAYDADCKGCTTY 480 >gi|89901782|ref|YP_524253.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] gi|89346519|gb|ABD70722.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] Length = 589 Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 131/485 (27%), Positives = 214/485 (44%), Gaps = 65/485 (13%) Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVP 377 + RVA+ ++ E + E F +LS + F+ L +GT R L +C + + Sbjct: 36 WARVALAVSGAEPHHQNDWRERFLAMLSDWRFLPGGRILAGAGTSRRVTLFNCLAMGPIE 95 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GIF AL+E + G +G D++ +R A + + G + F+ V Sbjct: 96 DSVQGIFNALREAMQCLQAGGAIGIDFSTLRPALALAQSSGAVASGPVSFMNVWQAANAV 155 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 + G +R+ A+ A L H D+E F+D + +TG + + D FM+ + ++ Sbjct: 156 LEAGNRRRSAMLATLRCDHPDIEAFIDAKLDTG----ALSHFKLSVLLNDEFMQALQEDG 211 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIK---VFRKISAVALWRKMLTML 553 W L P L + E ER +D G + V R++ A ALW K+L Sbjct: 212 PWPLVFP--------LGEHPIPVGGEVCERVWSDGGPPQLCMVHRRVPARALWEKLLQAQ 263 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------CNLGSIN 606 +G P + F D N ++NL + L ++ + V CNLGSIN Sbjct: 264 HASGEPGVLFIDRIN-----------RANNLWYDEHLTVANPDGGVPLPPWGACNLGSIN 312 Query: 607 LLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L + F F D L + A R LD+V DI+ ++ +KS R IGLG+ Sbjct: 313 L-SRFVQQPFAAHPSVDLGGLRAVAAVATRFLDDVYDISLFPLKAQQKSALASRRIGLGV 371 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G L +L + Y S ++++ E M I A SVELAQE+GA+ + + Sbjct: 372 TGLADMLAMLGLRYGSAASIDLTREIMGAIRDTAYRTSVELAQEKGAFPACDKLKYGASP 431 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVS 779 F ++ ++R L+ + G+RNS+ +A+APT +I+ + VS Sbjct: 432 FVLE-------------LDRA-------LQDAIAQHGIRNSHLLAVAPTESISLLANNVS 471 Query: 780 QSIDP 784 I+P Sbjct: 472 NGIEP 476 >gi|257468300|ref|ZP_05632396.1| putative ribonucleotide-diphosphate reductase [Fusobacterium ulcerans ATCC 49185] gi|317062578|ref|ZP_07927063.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium ulcerans ATCC 49185] gi|313688254|gb|EFS25089.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium ulcerans ATCC 49185] Length = 753 Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 145/576 (25%), Positives = 258/576 (44%), Gaps = 79/576 (13%) Query: 341 EFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 E ++++ F+ + L N G R S+C++ P+D L IF ++ A Sbjct: 42 ELKEMIANKEFIFAGRILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYS 101 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 Y GG G D + +R G+ ++ + + G I F+++ N T + Q G+R GA+ ++ Sbjct: 102 YGGGCGVDISKLRPKGSEVNNSAKYTTGSISFMELYNLTTDIIGQKGRR-GALMISIDVN 160 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DV EF+ ++ D + N + + FMK V + + Sbjct: 161 HPDVSEFISIK----SDLNKIQKANISVRVDANFMKAVVEGLQFV--------------- 201 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSP 572 EF + D GE+ + ++I A L++++ ++ P + F D N+ S Sbjct: 202 TEFLVE--------DTGEV-ISKEIDARKLFKELARQNWKFAEPGVLFWDRISKWNLLSE 252 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +N C E L + C LGS+ L +FD+D+LA+ ++ +V+ L Sbjct: 253 DEEFEYA-GTNPCAEEPLPAGGS----CLLGSLILPTFVEGKEFDFDRLANAVQKSVKAL 307 Query: 633 DNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 ++V+D + H +E+ ++S R IGLG++G L L + Y SPE++E D + I Sbjct: 308 NDVLDEGLPLHPLEEQRESVRDWRQIGLGILGVGDLLIKLGMKYGSPESLEFCDNIAKVI 367 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 +A+ AS LA+E GAY +K D + ++ E + S E Sbjct: 368 IDNALKASALLAKESGAYPKYKA----------DKV-----LKSEFLLENASI----ETL 408 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + ++ G+RNS + IAPT +I + S I+P++ Y++ S L Sbjct: 409 QLIEEYGLRNSQLLTIAPTGSIGTMLETSTGIEPNFAFSYIRKTES-------------L 455 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 D++ + I K + N DDL + TA ++P I+ QK ID + Sbjct: 456 HGEDVFYKVFIPIAKKY--MEENEIDDEDDLPEYFVTAQNLNPYDRIKMQGIWQKRIDAS 513 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 S + L ++ S ++++ +Y +AW GLK R+ Sbjct: 514 ISSTINLVNKVSVEEVEKLYLEAWKNGLKGMTIYRA 549 >gi|163939260|ref|YP_001644144.1| ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis KBAB4] gi|229010749|ref|ZP_04167946.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus mycoides DSM 2048] gi|229132250|ref|ZP_04261106.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-ST196] gi|163861457|gb|ABY42516.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis KBAB4] gi|228651188|gb|EEL07167.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-ST196] gi|228750423|gb|EEM00252.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus mycoides DSM 2048] Length = 462 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 127/492 (25%), Positives = 226/492 (45%), Gaps = 71/492 (14%) Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKGA YL +H D+ EFLD +K D++ R ++ +P F + +N + +F Sbjct: 2 QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHP 559 +P V + + + +I E Y+ ++K +K ISA + K+ + E+G+P Sbjct: 62 APYTVFKEYGKHLDDIDID-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYP 118 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINL 607 ++ FK N + P + +G V SNLCTEI +N E + CNLGS+N+ Sbjct: 119 YLMFKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNI 178 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + N + + + + + V D I N T++KA H+ +GLG M L Sbjct: 179 VNVMENKEIR-EAVHAGMEALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYL 234 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----- 721 I Y S EA E A +++++I S+E+A+E+G + F S + G + Sbjct: 235 AKNKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYE 294 Query: 722 -----PI-DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 P+ + I L E ++ ++ W LK++V+ G+ NS +AIAPT +I+ + Sbjct: 295 TTDYSPVTEKIQQLFE-----GIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYV 349 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + S+ P +V++++ R + + Y Sbjct: 350 QNATSSVMP---------------------IVSQIESRTYANATTYYPMPY--------- 379 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894 + D + ++++++ LI+ + Q+ IDQ S LY++ + S ++L Y A Sbjct: 380 -LSKDTFWYYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHK 438 Query: 895 MGLKTTYYLRSR 906 GLK+ YY R+R Sbjct: 439 KGLKSLYYTRTR 450 >gi|320332670|ref|YP_004169381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Deinococcus maricopensis DSM 21211] gi|319753959|gb|ADV65716.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Deinococcus maricopensis DSM 21211] Length = 976 Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 151/587 (25%), Positives = 240/587 (40%), Gaps = 93/587 (15%) Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428 + TV DD+ GI A ++ + AK D + +R GA I G+ G S G + FL Sbjct: 213 ILTVQDDMGGIIDAARQVSETAKLGLEPRIDLSGMRPEGAPIKGSGGTSSGPVSFLVEIF 272 Query: 429 ----KVANDTA-----------------VAVNQGGKRKGAVCAYLETWHIDVEEFL---D 464 + AN A V QGG R+GA A + H DV +FL D Sbjct: 273 DNFLEWANRGAETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATISIGHADVLDFLTAKD 332 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD--LHDLYGKEFEIAY 522 L + + T N + + + F + N W + + D L GK Sbjct: 333 LDREASEGDIST--FNISILVDEAFWATLQANGLWAIPAQDVPGKYYLEPQKGKFSGSFP 390 Query: 523 ENYERQAD--RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577 E ER D RG KI A LWR++ + TG P + F D N S +++G Sbjct: 391 ELPERAEDGARGVPTYGGKIPAAWLWREIAQHAWSTGEPGLIFVDRINEYSALKNLGERY 450 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + S+N C EI L C+LG+INL A+ + FDY + +RT VR LD+V+D Sbjct: 451 QIKSTNPCGEIPLTVGEP----CDLGAINLAAYVKGSDFDYAAFRADVRTTVRFLDDVLD 506 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +E ++++ + R +GLG+MG AL + + Y + E M + AI+ Sbjct: 507 VNVFALEDNREASQSLRRLGLGVMGLADALIKMGLRYDNEAGRTAIFEIMSALREEAIAE 566 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S L ERG Y + E ++ Sbjct: 567 SERLGAERGVYRVYT-----------------------------------ENADKIPHAP 591 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK------ 811 RN + +APT T + + GVS I+P + + S +++ V L+ Sbjct: 592 RRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLETYPPAA 651 Query: 812 QRDL---WDEAMISD-LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 D+ WD +++ + + GS+ + IPD L+++ A +I P+ + Q+ Sbjct: 652 NMDVDGKWDWDKVTEAVSENHGSVVGLSFIPDALQQVFVCAHDIKPLDHVRMQGAVQRAF 711 Query: 868 D----QAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907 D A SL+ ++ P+ + + Y +A+ G K R S Sbjct: 712 DAEGYAANSLSKTINLPNDATVQDVQDAYTEAYRTGCKGITVYRDGS 758 >gi|294506192|ref|YP_003570250.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8] gi|294342520|emb|CBH23298.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8] Length = 908 Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 137/549 (24%), Positives = 230/549 (41%), Gaps = 78/549 (14%) Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 ND +E + + E G Y G+ +P ++ R A +A E + + F Sbjct: 58 NDDIFETEISEEVYGQNYQY--------GTDDRVPDTWY-RNARAMAQVEDDTDMWTQRF 108 Query: 343 YNLLSS-------FHFMCSTPTLFNSGTR--HPQLSSCFLTTVP----DDLYGIFGALQE 389 Y LLS F F N+GT L +CF++ D + I L Sbjct: 109 YQLLSGKGLGTGPFPFTPGGRIFANAGTGLGKATLINCFVSGFQGHDQDSMDEIQAELTR 168 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK------ 443 A + GG G +R GA I G + G + L V N A + G Sbjct: 169 QAKILASEGGYGFCAHIMRPRGARIGGVGSMTPGAVQMLDVWNKQAATIVAGSGMKSDRD 228 Query: 444 ------RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 RKGA + WH D+ EF++ ++ G R H N + I D FM+ V + Sbjct: 229 DVKDKIRKGAQMVTMGIWHPDIIEFIEAKQEPG----RLHKFNMSVLITDEFMEAVKNDD 284 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS--------AVALWRKM 549 W L PD + + Y + ++ + Y+ + G +K + + A +W ++ Sbjct: 285 TWALRFPD-YENEKEFYKQHWDGNLKAYQEKG--GTVKTWTDPATGEPAVYEAREIWNRI 341 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-- 607 + + P + F D N + + ++++N C E L VC LG++N+ Sbjct: 342 MDSTYNRNEPGVIFVDTINKENNLAYTEHINATNPCGEQVLPVG----GVCLLGNLNVTQ 397 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 L + +YD + + AVR LDNV D++ +E+ +++ R IGLG G SAL Sbjct: 398 LVDREAGEINYDLVDDLVPLAVRFLDNVNDLSYVPLEEQQRNLQEKRRIGLGHYGDGSAL 457 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 ++ Y S E + E E ++ A AS LA+E+GA+ F Sbjct: 458 MMMKTRYGSEEGARVMREFQEHLANQAYQASARLAEEKGAFPLFD--------------- 502 Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785 +DE L+ RL D+ K+ + +G+RNS+ ++I PT + + S I+P Sbjct: 503 -----KDEYLSSPFVQRLS-DKTKEMIGDLGLRNSHLLSIQPTGNTSTLGNAPSSGIEPV 556 Query: 786 YQNLYVKSN 794 + + Y++++ Sbjct: 557 FMHSYIRTS 565 >gi|226331037|ref|ZP_03806555.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198] gi|225201832|gb|EEG84186.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198] Length = 326 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 149/305 (48%), Gaps = 22/305 (7%) Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ T +R GA I +S GV+P +K+ D NQ G R+GA YL Sbjct: 14 LSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYL 73 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D+ FLD ++ D++ R ++ IPD+ + +N LFSP +V ++ Sbjct: 74 HAHHPDIYHFLDTKRENADEKVRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERVYG 133 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 + E I+ E Y + +I+ +KI A ++ + + FE+G+P+I F+D N +P Sbjct: 134 VPMSEISIS-EKYSEMVNNAQIRK-KKIKAREFFQTLAEIQFESGYPYIMFEDAVNRANP 191 Query: 573 QQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDK 620 G ++ SNLC+EI +NS+SE CNLGS+N+ D Sbjct: 192 I--AGRINMSNLCSEILQVNSASEYHPDLSYRHIGHDISCNLGSMNIAM-----AMDSPN 244 Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 A T+ TA+R L NV ++ ++ +K N AIGLG M L I Y S EA Sbjct: 245 FAHTVSTAIRALSNVSEMTKIESVPSIEKGNLASHAIGLGQMNLHGYLARERIYYGSEEA 304 Query: 680 VEIAD 684 ++ + Sbjct: 305 LDFTN 309 >gi|288929559|ref|ZP_06423403.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella sp. oral taxon 317 str. F0108] gi|288329064|gb|EFC67651.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella sp. oral taxon 317 str. F0108] Length = 854 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 165/683 (24%), Positives = 289/683 (42%), Gaps = 111/683 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 FA + L ++ ++Y + + I + P+ R+A +A E + A E Y LL Sbjct: 20 FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYPNPLSAQEVYELL 79 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400 F ++ S T +G + LS+CF+ + D YG I +E L K GG+ Sbjct: 80 DHFRYIVPAGSPMTGIGNGYQVASLSNCFVVGLEGDADSYGAILRIDEEQVQLMKRRGGV 139 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + I D FM+ + Y ++F I Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDSFMQAAVDDKP---------------YVQQFPI 239 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578 + D E+K ++ISA LW K++ +++ P + F D S P + + Sbjct: 240 -------EGDNPEVK--KEISAKTLWEKIVHNAWQSAEPGVLFWDTILRESIPDCYADLG 290 Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 S+N C EI L C L +NL ++ N FD+DK A + A R+ Sbjct: 291 FRTVSTNPCGEIPLCPYDS----CRLLCVNLFSYVVNPFTKEAYFDFDKFAKHVAVAQRI 346 Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 +D+++D+ H EK K+ + R G+G+ + Sbjct: 347 MDDIVDLELEKIDLIMEKIKDDPQNDEVKGAEYHLWEKIKRKSSMGRRTGVGITAEGDMI 406 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L + Y + EA +++ + ++ A +SV +A+ERGA+ F F I Sbjct: 407 AALGLRYGTQEATDVSVSVHKRLALAAYRSSVVMAKERGAFEIFDAKREAANPF----IL 462 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L E L +D++ G RN C+ IAPT T + + + I+P + Sbjct: 463 RLKEADQSL---------YDDM----VAYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834 +Y + ++ + T V+ V+E+ D ++E ++ K+ D N I Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFMDWMKANGFDTDKRYTQEEI 567 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893 + I + ATA ++D + + QKW+D + S+ + L + L + +Y +AW Sbjct: 568 DAIVEQSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNLPNDVDEALVNRLYVEAW 627 Query: 894 LMGLK--TTYYLRSRSATSVEKS 914 G K T Y SRS + S Sbjct: 628 RSGCKGCTIYRDGSRSGVMISVS 650 >gi|257076070|ref|ZP_05570431.1| ribonucleoside reductase class II [Ferroplasma acidarmanus fer1] Length = 1136 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 104/313 (33%), Positives = 158/313 (50%), Gaps = 41/313 (13%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL + +F+Y++ TI A R L+NV+D N +E K R IGLG Sbjct: 815 CNLGSINLAKFVEDGKFNYERYRETIDVATRFLENVVDANKFPVESIKNMTRKTRKIGLG 874 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF AL +L IPY S EA+E A+ M+ ++ + S +LA ERG + + GS +++ Sbjct: 875 IMGFADALIMLGIPYNSNEALEFAENVMKTLNDESHMESQKLAAERGVFPGWYGSEYEE- 933 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 K I MRNS IAPT TI+ I G S Sbjct: 934 ----------------------------------KGIKMRNSTTTTIAPTGTISIIAGCS 959 Query: 780 QSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI+P + +V+ ++G + VN L N LK R+LW + ++ + G +GN++ +P Sbjct: 960 SSIEPLFALAFVRHVLNGQELLEVNPLLENALKSRNLWTQELMEKIA-ETGKLGNLD-LP 1017 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896 +D+K + TA EIDP W + + QK+ D ++++NL D + + + YR A + Sbjct: 1018 EDVKNLFITAQEIDPDWHVLMQATFQKYCDSGVSKTINLPFD-ATREDIAKSYRLAKELH 1076 Query: 897 LKTTYYLRSRSAT 909 K R RS + Sbjct: 1077 CKGITVYRDRSKS 1089 Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 113/247 (45%), Gaps = 32/247 (12%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +F N++ ++ ++PTL N+G QLS+CF+ V D + IF L+ A + K GG Sbjct: 224 KFENMMIKLEYVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFDTLKATAEIHKSGGGT 283 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R + T G + G + F+++ + T + QGGKR+GA L H ++ Sbjct: 284 GFSFSRLRASDDIVASTKGVASGPVSFMRIFDVTTDVIKQGGKRRGANMGILNYNHPNIM 343 Query: 461 EFLDLRKNTGDDRRRT-HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +F+ N+ D + + N + + D F +++ + L +P + Sbjct: 344 DFI----NSKDAENKILSNFNISVGVNDEFFEKLDNDENVDLINPRDG------------ 387 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 KV ++ A LW ++ + T P + F D N ++P +++G + Sbjct: 388 ---------------KVTGRVKATTLWNSIIDHAWLTADPGMIFLDEINKKNPVKNIGYI 432 Query: 580 HSSNLCT 586 S+N C Sbjct: 433 ESTNPCV 439 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 33/165 (20%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 VIKR+G FD KI+ AI KA ++V+ + ++ D + E S+ Sbjct: 8 VIKRDGSSVPFDKKKIAMAIFKAMLSVKIGSMEEANKLADYVAQELET----------SS 57 Query: 91 LIVHIEDIQDQVECSLMQSGHHKIT-----REYVLYREERSDVRAAQSHSKSDAPIAPKL 145 + +E IQD VE LM + ++ + Y+LYRE+R+ +R + Sbjct: 58 EVPTVELIQDTVEKVLMTRRINDVSYIAAAKAYILYREKRNTIRQEKEF----------- 106 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190 I + D +S N+ + V EA +D KI+ ET K M+ Sbjct: 107 -IGVKDDLKLSLNAVK----VLEARYLFKDSEGKII--ETPKQMF 144 >gi|153820327|ref|ZP_01972994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae NCTC 8457] gi|126509128|gb|EAZ71722.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae NCTC 8457] Length = 408 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 113/394 (28%), Positives = 170/394 (43%), Gaps = 25/394 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ Y+ P H + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF+ + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375 ++ VA L K KE R FY+ S+F TP + SG R P Q SSC L Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349 Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526 TLFSP +V L+D + + EFE Y YE Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYE 383 >gi|78044854|ref|YP_359531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, intein-containing [Carboxydothermus hydrogenoformans Z-2901] gi|77996969|gb|ABB15868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, intein-containing [Carboxydothermus hydrogenoformans Z-2901] Length = 1101 Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 44/313 (14%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL + + D++ L T++ AVR LDNVID+N + + + +K R IGLG Sbjct: 627 CNLGSINLANMVKDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTRKIGLG 686 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF L L+IPY S EA+ +AD+ MEFI+ + AS ELA+ RG + ++K S+W + Sbjct: 687 VMGFADMLIKLNIPYDSEEALNLADKVMEFINKKSKEASAELARVRGTFPAWKKSVWAK- 745 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 K + +RN+ IAPT +I+ I GVS Sbjct: 746 ----------------------------------KGLKLRNATTTTIAPTGSISIIAGVS 771 Query: 780 QSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 I+P + + + + D V+ ++ + E +++++ G I I +P Sbjct: 772 SGIEPVFALAFKRHILDRKDIVEVHRLFEQHARENGYYSEKLMNEVA-KTGRITGIAGVP 830 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLM 895 ++ K++ TA +I P W ++ + QK D A S + + P+ ++ + Y A+ + Sbjct: 831 EEAKRLFVTALDIAPEWHVKMQAVFQKHTDNAVSKTINM--PNSATVEDVKESYLLAYKL 888 Query: 896 GLK--TTYYLRSR 906 G K T Y SR Sbjct: 889 GCKGLTVYRDGSR 901 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 141/295 (47%), Gaps = 37/295 (12%) Query: 298 LQILYDRYFL-HINGSRIEMPQAFFMRVAMGLA-----LKETEKEKRAVEFYNLLSSFHF 351 L++L RY + G IE P+ F RVA +A E ++E+ A EFYN +++ F Sbjct: 9 LKVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNFMTALDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + +TPTL N+G QLS+CF+ V D + IF A++ +A++ K GG G ++ +R G Sbjct: 69 LPNTPTLVNAGRPLGQLSACFVLPVGDSMEEIFDAVKYSALIHKSGGGTGFSFSRLRAKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ + + Sbjct: 129 ARVRSTGGIASGPVSFMKVFNAATEAVKQGGVRRGANMGVLRCDHPDILEFITAK----E 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D R + N + + D FMK + ++ + L P + L +E Sbjct: 185 DNRDITNFNISVALTDKFMKALEEDGEYELIEPSTGEVVGRLRARE-------------- 230 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 VF +I+ A W+ G P + F D N + +G + S+N C Sbjct: 231 ----VFERIARNA-WK--------NGEPGVIFIDRINAANVVPELGEIESTNPCV 272 >gi|39938540|ref|NP_950306.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma OY-M] gi|39721649|dbj|BAD04139.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma OY-M] Length = 769 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 149/576 (25%), Positives = 252/576 (43%), Gaps = 57/576 (9%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPTL N+G +H + SCFL D L I + + L+K GG+ + T +R Sbjct: 219 FTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINITNLRA 278 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G I G G +GV+ K+ + + +Q G R GA YL +H D+ +FL +K + Sbjct: 279 KGESIKGIKGVCKGVVGVCKLLDHSFRYADQIGLRTGAGAVYLNVFHSDIIDFLSTKKLS 338 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE-NYER 527 D+ R ++ +P+ ++ N F P V YGK F +IA + +Y Sbjct: 339 ADEDVRVKTLSLGVVVPNKMIELARNNEVMYTFFPHTV---FLEYGKNFADIAVDMDYWY 395 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 KV +K I+ L + M E+G+P++ F D N V SNLCT Sbjct: 396 DILVANPKVQKKAINPRQLLELIAHMQGESGYPYLMFCD--NTNQANTSDLKVKFSNLCT 453 Query: 587 EI---TLNSSSE---ETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 EI T+ S + +T +G S NL + N + + T+ A+ V++ V + Sbjct: 454 EILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNTIQETVFMAMEVMNCVSE 513 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N + K+N +R++G G+MG L +I + S E ++ D ++F+++ Sbjct: 514 NTNISYVPAVAKANFINRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAVNFYSLL 573 Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKK 751 S A+ G + F+ S + G + + +L + M + LP W +LK+ Sbjct: 574 HSCNKAKTTGKKFYRFEQSKYADGSYFDNRGEILPKTAKIKKMFQNITLPTQKDWHQLKQ 633 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 V G+ NS+ +A+AP +I I G + S+ P Q V+ G+ + LK Sbjct: 634 DVMQFGLYNSHRLAVAPNGSIGYIMGATPSLTPVKQ--LVEERTYGNSKTYCP--MPALK 689 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 Q ++ TA++++ LI+ + QK +DQ Sbjct: 690 QTSF----------------------------MYTTAYKMNKYDLIDVIAIAQKHVDQGI 721 Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S L + + + ++L Y A +KT YY R++ Sbjct: 722 SFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQ 757 >gi|254243048|ref|ZP_04936370.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192] gi|126196426|gb|EAZ60489.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192] Length = 734 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 150/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243 Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P DE+ DL D L +E+ I + +R KV+ ++ A L Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNALVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358 Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL F + +FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765 L + D +R + + SR P EL + + G R ++ + Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536 Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 IAPT TI AN S I+PS+ +NL + + + V S+ + L R L Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 592 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874 + + D S R+PD TA + P ++ + QKW+D +++ N Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 642 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + D P D IYR AW GLK R Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671 >gi|329957666|ref|ZP_08298141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides clarus YIT 12056] gi|328522543|gb|EGF49652.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides clarus YIT 12056] Length = 845 Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 170/693 (24%), Positives = 292/693 (42%), Gaps = 121/693 (17%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + + E ++ Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTSEELFD 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL+ F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ + P + ++ Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGTPFVQQYPIDATE--------- 242 Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576 VF+K ISA LW+K++ +++ P + F D S P + Sbjct: 243 ----------------PVFKKEISAADLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYA 286 Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALA 342 Query: 629 VRVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGF 663 R++D++ID+ IE+ KKS R G+G+ Sbjct: 343 QRIMDDIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQKIYKKSGQGRRT-GVGITAE 401 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L L + Y + EA E A++ + ++ A +SVE+A+ERGA+ + F Sbjct: 402 GDMLAALGLRYGTEEATEFAEKVHKTVALSAYRSSVEMAKERGAFEVYDSEREKNNPF-- 459 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 I L E EL ++E+KK G RN C+ IAPT T + + + I+ Sbjct: 460 --INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIE 504 Query: 784 PSYQNLYVK--------SNMSGDFT-----VVNSFLVNELKQRDLWDEAMISD--LKYHD 828 P + +Y + +N+ DF ++V K W EA D +Y Sbjct: 505 PVFLPVYKRRRKVNPNDANVHIDFVDETGDAFEEYIVFHPKFV-TWMEAEGYDPAKRYTQ 563 Query: 829 GSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-D 886 I +E+ P AT+ ++D + ++ R QKW+D + S+ + L ++L + Sbjct: 564 DEIDALVEKSP----YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVN 619 Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK 917 +Y +AW G K T Y SRS + + K Sbjct: 620 RLYIEAWKSGCKGCTVYRDGSRSGVLISAKSEK 652 >gi|52550429|gb|AAU84278.1| ribonucleotide reductase large subunit [uncultured archaeon GZfos9C4] Length = 914 Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 39/280 (13%) Query: 600 CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNLGSIN+ + + D+++L I +V+ LD+VID+N + + + +K +R IG Sbjct: 608 CNLGSINVSKFVKSGDGEIDWERLREVICISVKFLDDVIDVNRYPLPEIEKMTKANRKIG 667 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MGF L L I Y S +A+ ++ M+FI+ A S EL ERG++S+F+ S+W+ Sbjct: 668 LGIMGFAELLIKLGIAYDSKDALSTGEKLMQFITNEARRCSTELGLERGSFSNFELSVWN 727 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 K MRN+ IAPT TI+ I G Sbjct: 728 S-----------------------------------KYEAMRNATVTTIAPTGTISIIAG 752 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S I+P + +V+ N+ G +N K+R + + +I+++ GS+ +I+ + Sbjct: 753 CSSGIEPIFAVAFVR-NVMGGMLEINKLFEEIAKERGFYSKELITEIA-KCGSVQDIDGV 810 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 P D+K++ TA +I P W + + QK+ D A S + L Sbjct: 811 PGDIKRVFVTALDISPEWHVRMQAAFQKYTDNATSKTVNL 850 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 40/305 (13%) Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVE-- 341 D +++L RY L G IE P F RVA +A E +++E + +E Sbjct: 19 DLKLSLNAVEVLKRRYLLKNELGGVIETPSQMFKRVAKAIARAELNYGKSKEEVKEIERR 78 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY L+ + F+ ++PTL N+GT QL++CF+ V D + GIFGA+++ A + + GG G Sbjct: 79 FYLLMRNLEFLPNSPTLMNAGTELGQLAACFVLPVEDSIGGIFGAVKKMAKIHQSGGGTG 138 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R G + T G + G + F++V + + QGGKR+GA L H D+ E Sbjct: 139 FSFSRLRPKGDVVKSTGGVASGPVSFMRVFDVATDVIKQGGKRRGANMGILNAEHPDILE 198 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ + +R + NT+ + D FM+ V +N + L +P Sbjct: 199 FIRAK-----ERGEFANFNTSVAVTDEFMRAVERNDEYGLVNP----------------- 236 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +GE+K +I A ++ +++T ++TG P I F D N R+ VG + + Sbjct: 237 -------RTKGEVK---RIKAREVFNEIVTYAWKTGDPGIVFMDEINRRNTIPAVGKIEA 286 Query: 582 SNLCT 586 +N C Sbjct: 287 TNPCV 291 >gi|255691403|ref|ZP_05415078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides finegoldii DSM 17565] gi|260623049|gb|EEX45920.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides finegoldii DSM 17565] Length = 847 Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 169/701 (24%), Positives = 293/701 (41%), Gaps = 111/701 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E++ A E Y+ Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIESKYPNALTAKELYD 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG I +E L K G Sbjct: 77 LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ + P + SD + KE Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDGKPYLQQYPIDSSD--PTFTKE- 248 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 I A LW+K++ +++ P + F D S P + Sbjct: 249 ---------------------IDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPNAYFDFDLFKKHVALAQ 343 Query: 630 RVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQ 664 R++D++ID+ IE+ KKS R G+G+ Sbjct: 344 RIMDDIIDLELEKIERIMHKIDEDPENDEVKRAERVLWEKIYKKSGQGRRT-GVGITAEG 402 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + F Sbjct: 403 DMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYDNKREQNNPF--- 459 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 I LAE EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 -IQRLAEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505 Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN---------- 833 + +Y + ++ + T V+ V+E D ++E ++ K+ N Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPSKRYSQ 563 Query: 834 --IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890 I+++ AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 564 EEIDKLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYV 623 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +AW G K R S + V ST + K P P Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLISTKSDKNKKEELPPCKPP 664 >gi|88705203|ref|ZP_01102914.1| Ribonucleotide reductase large subunit [Congregibacter litoralis KT71] gi|88700293|gb|EAQ97401.1| Ribonucleotide reductase large subunit [Congregibacter litoralis KT71] Length = 715 Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 156/625 (24%), Positives = 261/625 (41%), Gaps = 62/625 (9%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTT--- 375 F RVA LA ET + E + + + N+G P S+ T Sbjct: 49 FKRVAAALAKVETSDHEDWKEKFEWALRNGATPAGRIMSNAGAEKYKPSTSTINCTVSGP 108 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D + GI A E + K G+G +++ +R GA++ G ++ G + F+++ + T Sbjct: 109 ISDSMEGILQANLEAGLTLKAGCGIGYEFSTLRPSGANVAGAGAETSGPLSFMEIFDATC 168 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ G R+GA + H DV EF+ ++ G R+ N + I D FM+ V Sbjct: 169 KTVSSAGGRRGAQMGTFDVSHPDVFEFIRAKRTDGMLRQ----FNLSLLITDEFMEAVKA 224 Query: 496 NAGWTLFSPDEVSDLHD---------LYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 W L P + +L D + K F I + K++ + A LW Sbjct: 225 EGDWPLVFPIKADNLEDAEKKAGSRGILWKYFPITDGYLSNEVGEVACKIYNVVKARELW 284 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +++++ ++ P D N+ + + S+N C E L C LGS+N Sbjct: 285 DEVMSLTYDYAEPGFILIDKYNVMNNNWFCENIRSTNPCGEQGLPYYGS----CLLGSVN 340 Query: 607 L----LAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L ++ F + FD+DK R++DNV++IN + + + T R G+G + Sbjct: 341 LTRFIVSPFTDRAAFDWDKFREVTAIFTRMMDNVVEINGLPLPEQVEEITTKRRHGIGYL 400 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGS 714 G SA+ L+ + Y S EAV D ++ +ELA+E+GA Y Sbjct: 401 GLGSAVTLMGMRYGSEEAVAFTDRVSRELAVVGWKVGLELAKEKGAAPILDKNYDVTGEM 460 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAP 768 L + D L +V + M R SR +L ++ G R ++ +IAP Sbjct: 461 LNARPEMIADGFKLGDKVSGRVLMARYSRYMQTIAEVEPQLVAEIEQHGARFTHHSSIAP 520 Query: 769 TATIA--NICGVSQSIDPSYQNLYVKS-----NMSGDFTVVNSFLVNELKQRDLWDEAMI 821 T TIA S I+PS+ + Y+++ + T V SF + L R L + Sbjct: 521 TGTIAFSFANNSSNGIEPSFAHSYMRNIIKAGKKTKQQTEVQSFEL--LAYRHLINPE-- 576 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDE 879 +D +G P+ L T +I P ++ + QKWID ++++N+ + Sbjct: 577 ADPYATEG--------PNKLPDYFITTNDISPKEHVDMQAASQKWIDSSISKTVNVPTEI 628 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 P D +Y A+ GLK R Sbjct: 629 PYDSFKD-VYMYAYERGLKGCTTFR 652 >gi|238801852|ref|YP_002922902.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria phage WV8] gi|216263065|gb|ACJ71933.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria phage WV8] Length = 723 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 177/790 (22%), Positives = 318/790 (40%), Gaps = 106/790 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I +GT++SF+ +RL A + + V E K +Y+G + ++ A+I Sbjct: 5 IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMI--- 59 Query: 207 RTLIEKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 ++K+ Y+ + R LL + +E K P T F + +E + Sbjct: 60 DVCVDKQTQEYSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNME---R 105 Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320 A L + MD+ +L YL + + +D ++ Y L+ D+Y + G E PQ Sbjct: 106 AGLWEK--MDYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFM 163 Query: 321 FMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 FM G+A+K EK+ + ++ Y LS TP L +SC L Sbjct: 164 FM----GMAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLI 219 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D + A + + G+G R +G I + G +P+ K+ + Sbjct: 220 KANDTAESLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVR-S 277 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 +V N+ R G+ + +E+ L L+ T +R ++M+ + D F + V Sbjct: 278 SVEANKQKSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQ 337 Query: 495 QNAGWTLFSPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + W LFS + L+D++ EF +A + A +K R++ A + + + Sbjct: 338 YDTDWLLFSYKDAPKLYDMFYTASADEFAMAVGH----AVHSGVK-HRRVKAREIAKLFI 392 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------AVCNL 602 + TG + F + N +P + + SNLC EI L E AV Sbjct: 393 QQRYATGRVYPFFTNNANTHTPFKEP--LKMSNLCMEIVLPVYGFEKETDLYRDDAVKED 450 Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 G + L LA + D+ A A+ ++D+VID+ + + R++G+GL Sbjct: 451 GEVALCFLASLVAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGL 510 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 L ++ Y+S E E S++ AS+ LA+ERG K + + +G Sbjct: 511 TNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGW 570 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVS 779 P + + + + + R WD+L +R+K G+RNS A P + + + Sbjct: 571 VPPKTANKKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTT 626 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + P + K + +G+ + +PD Sbjct: 627 NGLYPIRDFILTKKSATGNVLFI----------------------------------VPD 652 Query: 840 --DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM-- 895 +LK ++ A++ID +I+ + QK+ QA S + Y+D KK+ +++ Sbjct: 653 YEELKYVYEIAWDIDTFDMIDCYAIAQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYA 712 Query: 896 ---GLKTTYY 902 G+KT YY Sbjct: 713 NSVGMKTMYY 722 >gi|260909524|ref|ZP_05916227.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260636372|gb|EEX54359.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 854 Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 165/683 (24%), Positives = 287/683 (42%), Gaps = 111/683 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 FA + L ++ ++Y + + I + P+ R+A +A E + A E Y LL Sbjct: 20 FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYPNPLSAKEVYELL 79 Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400 F ++ + + G H LS+CF+ + D YG I +E L K GG+ Sbjct: 80 DHFRYIVPAGSPMTGIGNSHQVASLSNCFVVGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + I D FM+ + Y ++F I Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDNFMQAAVDDKP---------------YVQQFPI 239 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHVG 577 +N E V ++ISA ALW K++ +++ P + F D +I +G Sbjct: 240 NSDNPE---------VEKEISAKALWDKIVHNAWQSAEPGVLFWDTILRESIPDCYADLG 290 Query: 578 VVH-SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 S+N C EI L C L +NL ++ N FD+DK A + A RV Sbjct: 291 FTTVSTNPCGEIPLCPYDS----CRLLCVNLFSYVVNPFTKEAYFDFDKFAKHVAIAQRV 346 Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 +D+++D+ H EK K+ + R G+G+ + Sbjct: 347 MDDIVDLELEKIDLIMEKIKDDPQSSEVKGAEYHLWEKIKRKSSMGRRTGVGITAEGDMI 406 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L + Y + EA +++ + ++ A +SV +A+ERGA+ F F I Sbjct: 407 AALGLRYGTQEATDLSVSVHKCLAIAAYRSSVVMAKERGAFEVFDAKREAANPF----IL 462 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L E L + + G RN C+ IAPT T + + + I+P + Sbjct: 463 RLKEADPSLYNDMVA-------------YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834 +Y + ++ + T V+ V+E+ D ++E ++ K+ D N I Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFMDWMKANGFDTEKRYTQEEI 567 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893 + I + ATA ++D + ++ QKW+D + S+ + L + L + +Y +AW Sbjct: 568 DAIVEQSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAW 627 Query: 894 LMGLK--TTYYLRSRSATSVEKS 914 G K T Y SRS + S Sbjct: 628 RSGCKGCTIYRDGSRSGVMISVS 650 >gi|107104599|ref|ZP_01368517.1| hypothetical protein PaerPA_01005678 [Pseudomonas aeruginosa PACS2] Length = 714 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 108 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 167 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 168 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 223 Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P DE+ DL D + +E+ I + +R KV+ ++ A L Sbjct: 224 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 338 Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL F + +FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765 L + D +R + + SR P EL + + G R ++ + Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 516 Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 IAPT TI AN S I+PS+ +NL + + + V S+ + L R L Sbjct: 517 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 572 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874 + + D S R+PD TA + P ++ + QKW+D +++ N Sbjct: 573 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 622 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + D P D IYR AW GLK R Sbjct: 623 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 651 >gi|149183744|ref|ZP_01862151.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. SG-1] gi|148848544|gb|EDL62787.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. SG-1] Length = 854 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 122/436 (27%), Positives = 196/436 (44%), Gaps = 56/436 (12%) Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541 FM+ V +A + L PD + +E + EN+ D E ++ +RK+ Sbjct: 379 FMEAVENDAEYELRFPD----VEKYDEEEMKFYNENWHEVGDVREWEQMGYKVRTYRKMR 434 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW + + P I F D N ++ + G V ++N C E L S VC Sbjct: 435 AKELWNLINVCATYSAEPGIFFIDNANDKTNAKAYGQKVVATNPCGEQPLAPFS----VC 490 Query: 601 NLGSINLLAHFA---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL ++NL A FA N D+DKL T+ VR+ DNVID + +E+ KK R +G Sbjct: 491 NLAAVNL-AEFADKENKTVDFDKLKKTVEVGVRMQDNVIDATPYFLEQNKKQALGERRVG 549 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L Y S E ++ DE E I+ A ASVEL++E+G++ +G + Sbjct: 550 LGVMGLADLLIYCEKEYGSEEGNKLVDEVFETIAVTAYRASVELSKEKGSFPFLQGETEE 609 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + L E + S +P D +++ + G+RNS+ + +APT + + G Sbjct: 610 E-------TNRLREAF--INTGYMSEMPED-VRQSILDNGIRNSHLLTVAPTGSTGTMVG 659 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 V+ ++P + Y +S G F V + +V E +R N E Sbjct: 660 VATGLEPYFSFTYYRSGRLGKFIEVKAEIVQEYLER-------------------NPEVN 700 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWL 894 PD L + ++ E+ P + Q+WID S++ ++ P G +D +Y + + Sbjct: 701 PDSLPEWFVSSMELAPEAHADVQCVIQRWID--SSISKTVNAPRGYTVDQVQGVYERLYK 758 Query: 895 MGLK--TTYYLRSRSA 908 G K T Y SR + Sbjct: 759 GGAKGGTVYVDGSRDS 774 Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 5/146 (3%) Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--TRHPQLSSCFLTTVP 377 R A GLA ET +EKR +FY+ L + +F+ + L+ +G T + + V Sbjct: 137 RNATGLASVETTEEKRQEWFEKFYHELVNMNFVPAGRVLYGAGADTDVTYFNCYVMPFVK 196 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D GI ++ + GG+G + + +R G NGKS G + +L Sbjct: 197 DSRDGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 256 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463 V QGG R+GA L WH D+ EF+ Sbjct: 257 VEQGGSRRGAQMIMLADWHPDIIEFI 282 >gi|116053647|ref|YP_793974.1| putative ribonucleotide reductase [Pseudomonas aeruginosa UCBPP-PA14] gi|218894600|ref|YP_002443470.1| NrdJa [Pseudomonas aeruginosa LESB58] gi|254237823|ref|ZP_04931146.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719] gi|115588868|gb|ABJ14883.1| putative ribonucleotide reductase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169754|gb|EAZ55265.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719] gi|218774829|emb|CAW30647.1| NrdJa [Pseudomonas aeruginosa LESB58] Length = 734 Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243 Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P DE+ DL D + +E+ I + +R KV+ ++ A L Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358 Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL F + +FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765 L + D +R + + SR P EL + + G R ++ + Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536 Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 IAPT TI AN S I+PS+ +NL + + + V S+ + L R L Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 592 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874 + + D S R+PD TA + P ++ + QKW+D +++ N Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 642 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + D P D IYR AW GLK R Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671 >gi|304314793|ref|YP_003849940.1| ribonucleoside-diphosphate reductase, large subunit [Methanothermobacter marburgensis str. Marburg] gi|302588252|gb|ADL58627.1| predicted ribonucleoside-diphosphate reductase, large subunit [Methanothermobacter marburgensis str. Marburg] Length = 573 Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 44/309 (14%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL + + ++++L T+ TAV LDNVID+N + + + ++ R IGLG Sbjct: 280 CNLGSINLSLMVSASGVNWERLRRTVHTAVHFLDNVIDVNSYPLPEVREMTLKTRKIGLG 339 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF L L +PY S EA+ +A+ M FI A AS +LA ERG++ F GS+WD+ Sbjct: 340 VMGFADMLIKLGVPYNSGEALGVAERVMSFIEGEARRASSDLAAERGSFPEFSGSMWDKM 399 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 F GMRN+ IAPT +++ I G S Sbjct: 400 GFE----------------------------------GMRNATLTTIAPTGSLSIIAGTS 425 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD--EAMISDLKYHDGSIGNIERI 837 I+P + + ++ + FT N + R D E +IS G++ + + Sbjct: 426 SGIEPLFAVSFTRNILGRKFTENNPLFERIARGRLKRDTFEMIIS-----KGTLHGVSGV 480 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLM 895 P ++++ TA EIDP++ ++ + Q+ +D A +++NL D S + ++ A+ + Sbjct: 481 PGKIRRLFVTAHEIDPVFHVKMQAAFQRHVDNAVSKTVNLPPDA-SINDAERVFGAAYEL 539 Query: 896 GLKTTYYLR 904 G K R Sbjct: 540 GCKGITIYR 548 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 35/167 (20%) Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 G + G + F++V + + QGG+R+GA L H D+ F++ + + G R + Sbjct: 2 GVASGPVSFMRVFDVAVEVIKQGGRRRGANMGVLHVSHPDIFGFIEAKTSEGPLR----N 57 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + +PD FM ++ L +P + + +E +F+ Sbjct: 58 FNLSVSVPDRFM----EDRKIDLINPRTGETVDSVPSRE------------------IFK 95 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +I A WR +G P + F+D N R+P +G + ++N C Sbjct: 96 RIVKAA-WR--------SGDPGMIFEDRINRRNPTPSLGRIEATNPC 133 >gi|296392362|ref|ZP_06881837.1| NrdJa [Pseudomonas aeruginosa PAb1] Length = 714 Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 108 TIQDSMDHILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 167 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 168 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 223 Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P DE+ DL D + +E+ I + +R KV+ ++ A L Sbjct: 224 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 338 Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL F + +FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765 L + D +R + + SR P EL + + G R ++ + Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 516 Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 IAPT TI AN S I+PS+ +NL + + + V S+ + L R L Sbjct: 517 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 572 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874 + + D S R+PD TA + P ++ + QKW+D +++ N Sbjct: 573 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 622 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + D P D IYR AW GLK R Sbjct: 623 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 651 >gi|15600690|ref|NP_254184.1| NrdJa [Pseudomonas aeruginosa PAO1] gi|9951832|gb|AAG08882.1|AE004962_6 NrdJa [Pseudomonas aeruginosa PAO1] Length = 734 Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243 Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P DE+ DL D + +E+ I + +R KV+ ++ A L Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358 Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL F + +FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765 L + D +R + + SR P EL + + G R ++ + Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536 Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 IAPT TI AN S I+PS+ +NL + + + V S+ + L R L Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 592 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874 + + D S R+PD TA + P ++ + QKW+D +++ N Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHMDIQAAAQKWVDSSISKTAN 642 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + D P D IYR AW GLK R Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671 >gi|298372704|ref|ZP_06982694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroidetes oral taxon 274 str. F0058] gi|298275608|gb|EFI17159.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroidetes oral taxon 274 str. F0058] Length = 881 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 156/680 (22%), Positives = 287/680 (42%), Gaps = 113/680 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346 F+ + L Q+ ++Y L + + + P+ R+A +A E + E + L Sbjct: 46 FSGDELATQVWINKYALKDSAGNLYEKSPEDMHRRMAREIARIEAKYPNPMSEDELFELF 105 Query: 347 SSFHFMCSTP---TLFNSGTRHPQLSSCFLTTV--PDDLYG-IFGALQENAMLAKYSGGL 400 F ++ T + + LS+CF+ V D YG I +E L K GG+ Sbjct: 106 DKFKYIVPQGGPMTGIGNSFQVSSLSNCFVVGVDGSSDSYGAIIKIDEEQVQLMKRRGGV 165 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V QGG+R GA+ + H D E Sbjct: 166 GHDLSAIRPEGSPVNNSALTSTGIVPFMERYSNSTREVAQGGRR-GALMLSISIKHPDSE 224 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 +F+D + ++ + N + I D FM+ V +T P D F + Sbjct: 225 KFIDAKL----EQNKITAANISVKIDDEFMRCVESGKQYTQQYP------IDSPNPTFSV 274 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVV 579 KI A LW K++ + + P + F D S P + + Sbjct: 275 ------------------KIDAKKLWNKIIHNAWASAEPGVLFWDTIIRESVPDCYADLG 316 Query: 580 H---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 + S+N C EI L C L ++NL ++ N F+++ +R A R+ Sbjct: 317 YKTVSTNPCGEIPLCPYDS----CRLLAVNLYSYVENPFTAMANFNFELFRKHVRYAQRI 372 Query: 632 LDNVIDINCHTI------------------------EKAKKSNHTHRAIGLGLMGFQSAL 667 +D++ID+ I +K K R G+G+ + Sbjct: 373 MDDIIDLEIEKIDRILEKISSDPESEVVKRTEYELWQKIKDKCINGRRTGVGITAEGDMV 432 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + YAS EA++ A+ + ++ A +SV +A+ERGA++ F Sbjct: 433 AAMGLRYASDEAIDFAENVQKVLAVEAYRSSVIMAKERGAFAVFDAK------------- 479 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 E ++ M P ++ + +K G RN C+ +APT T + + + I+P + Sbjct: 480 --REEKNPFVMRLREADP--QMYEDMKKYGRRNIACLTVAPTGTTSIMTQTTSGIEPVFL 535 Query: 788 NLYVKSNM--SGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSI---------GNIE 835 +Y + D V ++E+ Q D W++ + K+ D + N + Sbjct: 536 CVYTRKRKVNPNDKNVT----IDEVDAQGDSWEKFTVFHHKFVDWMVVNGYDVTKRYNEK 591 Query: 836 RIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891 + + +KK AT+ ++D + + R QKW+D + S+ + L E + ++L D +YR+ Sbjct: 592 ELAELIKKSPYYGATSNDVDWLNKVRLQGRIQKWVDHSISVTVNLPETATEELVDRLYRE 651 Query: 892 AWLMGLKTTYYLRSRSATSV 911 AW +G K R+ S +V Sbjct: 652 AWKVGCKGVTIYRAGSRGNV 671 >gi|317475578|ref|ZP_07934840.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii 1_2_48FAA] gi|316908282|gb|EFV29974.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii 1_2_48FAA] Length = 845 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 171/704 (24%), Positives = 293/704 (41%), Gaps = 120/704 (17%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + + E + Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALSSEELFG 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 L + F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ + P + +D Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKPYVQQYPIDATD--------- 242 Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576 VF+K I+A LW+K++ +++ P + F D S P + Sbjct: 243 ----------------PVFKKEINATDLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYA 286 Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALA 342 Query: 629 VRVLDNVIDINCHTIEK----------AKKSNHTH--------------RAIGLGLMGFQ 664 R++D++ID+ IE+ ++ HT R G+G+ Sbjct: 343 QRIMDDIIDLELEKIERIMAKIDADPESEDVKHTESVLWQKIYKKSGQGRRTGVGITAEG 402 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L + Y + EA E A++ + ++ A +SV +A+ERGA+ + F Sbjct: 403 DMLAALGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKERGAFEVYDSEREKNNPF--- 459 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 -INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505 Query: 785 SYQNLYVK--------SNMSGDFT-----VVNSFLVNELKQRDLWDEAMISD--LKYHDG 829 + +Y + SN+ DF ++V K W EA D +Y Sbjct: 506 VFLPVYKRRRKVNPNDSNVHIDFVDETGDAFEEYIVFHPKFV-TWMEAEGYDPAKRYTQE 564 Query: 830 SIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 I +E+ P AT+ ++D + ++ R QKW+D + S+ + L ++L + Sbjct: 565 EIDALVEKSP----YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNR 620 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +Y +AW G K R S + V ST K N +P P Sbjct: 621 LYVEAWKSGCKGCTVYRDGSRSGVLISTKS---DKKNELPPCKP 661 >gi|114776813|ref|ZP_01451856.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1] gi|114552899|gb|EAU55330.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1] Length = 723 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 165/677 (24%), Positives = 286/677 (42%), Gaps = 87/677 (12%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP-QAFFMRVAMGLALKETE--KEK 337 ANDL E F+ I +Y L G I++ QA + RVA LA E E +E Sbjct: 17 ANDLPAE--IPFQPASEDIWDKKYRLKDKLGREIDLDIQATYDRVATALAQVENEDVREL 74 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTR--HPQLSSCFLT---TVPDDLYGIFGALQENAM 392 F L++ + + + N+G P S+ T T+PD + GI + E + Sbjct: 75 WHERFVWALAN-GAIPAGRIMSNAGAEAHKPATSTINCTVSGTIPDSMTGILSMVHEAGL 133 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 K G+G +++ +R GA++ G + G + F+ + + V+ G R+GA Sbjct: 134 TLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPMSFMDIYDKMCFTVSSAGGRRGAQMGTF 193 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EF+ ++ G R N + I FM+ V +A W L P +++ D Sbjct: 194 DISHPDIVEFIRAKREDG----RLRQFNLSCLITRDFMEAVKHDADWDLVFPASQTEIDD 249 Query: 513 LYGKEFEIAYENYERQA---DRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 + N + + DRG + KV++ + AV LW ++ ++ P D Sbjct: 250 ADTRIVFKPVANPPKGSVKDDRGHVACKVYKTMKAVRLWDVIMASTYDYAEPGFILIDEV 309 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANN-QFDYDKLA 622 N + V ++N C E L C LGS+NL F +N +FD+D Sbjct: 310 NEMNNNWFCEDVRATNPCGEQPL----PPYGACLLGSVNLTRFVRDPFTDNARFDWDTYR 365 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + R+LDNV++IN +EK ++ R G+G +G S L +L PY S E++ Sbjct: 366 EVVSIFTRMLDNVVEINGLPLEKQRQEIMRKRRHGMGFLGLGSTLTMLRTPYGSTESLAF 425 Query: 683 ADESMEFISFHAISASVELAQERGAYSSF-------------KGSLWDQGVFPIDSIG-- 727 ++ ++ +EL E+GA + + + D G+ D + Sbjct: 426 TEQIAYEMARTGFQTGLELVDEKGAAPALTDLYEITPEMMAKRPEMADDGIKIGDMVAGK 485 Query: 728 --------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI----ANI 775 + + RD + L DEL ++ G R ++ +IAPT TI AN Sbjct: 486 VLWGKYSRYMQKFRDTANAEDAAML--DELIEK----GCRFTHHSSIAPTGTISLSLAN- 538 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 S I+PS+ + Y ++ ++ E ++ + +L + I N + Sbjct: 539 -NASNGIEPSFAHHYSRN------------IIREGRKSKEKVDVFSYELLAYRAHI-NAD 584 Query: 836 RIP---DDLKKI---HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDF 887 +P D+ K+ +A E+ P ++ + Q+W+D +++ N+ + P + D Sbjct: 585 AMPYATDENAKLPDYFISADEVTPKQHVDIQAAAQRWVDSSISKTANVPTEFPYDEFKD- 643 Query: 888 IYRQAWLMGLKTTYYLR 904 IY A+ GLK R Sbjct: 644 IYLYAYEQGLKGCTTFR 660 >gi|119485474|ref|ZP_01619802.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106] gi|119457230|gb|EAW38356.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106] Length = 328 Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 171/335 (51%), Gaps = 29/335 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ DG+ + ++ +V AC GL D + + + + DG++ +++ LI Sbjct: 15 EIQVIRRDGSRADLDISKIRNVVNWACEGL-DANPITLEAGLTTRLRDGVTTREIQDNLI 73 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + L EP++ V R + L ++ L + E + R +E Sbjct: 74 NCALELCSPSEPDWRYVAGRLHIWSLWKDTLAN-------------RGYRYEDYARTVES 120 Query: 263 GVK-----ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 VK +R+L + + D ++++D+ +Y G +L RY L E+P Sbjct: 121 KVKNHEYDSRILTYNPEELQQAGTWIDPQWDKDY--DYAGAVLLTKRYLLTN-----ELP 173 Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q + A+ LA+ E + + A +FY ++ +TP L N + LSSCF+T+ Sbjct: 174 QEALLTCALLLAVVEKPENRLFWARQFYEAIAKRKISLATPILGNLRIPNGSLSSCFITS 233 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D+L IF A+++ A ++K GG+G + + VR G+ + G S GVIP++K+ NDTA Sbjct: 234 MDDNLESIFDAIKDAARISKNGGGVGTNVSRVRATGSWVMGKENTSGGVIPWIKLLNDTA 293 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 +AVNQGG+R GA+ L+ WH+DV EFL+++ G Sbjct: 294 IAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENG 328 >gi|313680374|ref|YP_004058113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oceanithermus profundus DSM 14977] gi|313153089|gb|ADR36940.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oceanithermus profundus DSM 14977] Length = 961 Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 128/504 (25%), Positives = 226/504 (44%), Gaps = 80/504 (15%) Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL---DLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V QGG R+GA A ++ H DV +FL DL + + T N + D F++ + Sbjct: 292 VRQGGTRRGAGMATIDVAHPDVLDFLTAKDLDREAAEGDIST--FNISILATDAFVEALE 349 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEF----EIAYENYERQADRGE-----IKVFRK-ISAVA 544 ++ W + L + GK + E AY + E + V+ + A Sbjct: 350 KDELWPV-------RLRPVPGKYYLQPVEGAYTGEWPELGVAEDGARPVPVYEGGVPARW 402 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCN 601 +W ++ + TG P + F D N +S + +G + ++N C EI L C+ Sbjct: 403 IWHEVAWHAWATGEPGLIFIDRVNEKSALKGLGERWQIRATNPCGEIPLTVGEP----CD 458 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LG++NL A+ + FDY+ +RTAVR LDNV+D+N +E ++++ R +GLG+M Sbjct: 459 LGALNLAAYVEDGAFDYEAFRRDVRTAVRFLDNVLDVNVFALEDNREASQQLRRLGLGVM 518 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G AL + +PY S A E + M + A++AS L ERG VF Sbjct: 519 GLADALIKMGLPYDSEAAREAVWKIMSVMREEALAASEALGAERG-------------VF 565 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 P+ +E A E R+ RN + +APT T + + GVS Sbjct: 566 PL---------YEEEA----------EYFGRMGIKPRRNLAVLTVAPTGTTSMLMGVSSG 606 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----------DLWD-EAMISDLKYHDGS 830 I+P + + +V + G++ + L EL ++ WD + +I+ ++ + GS Sbjct: 607 IEPVF-SPFVWRRIGGEYKPLVHPLFQELMEQHPPHPDWEKDGTWDWDKLIAAIQENHGS 665 Query: 831 IGNIERIPDDLKKIHATAFEIDPM------WLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + +E +P+ ++ + A ++ P+ +++ A + ++ + S + L E S + Sbjct: 666 VQGLEVVPESIRAVFKCAHDVSPLDHVRMQGVVQRAFDAEGYVGNSLSKTINLPHEASVE 725 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907 ++ Y +A+ G K R S Sbjct: 726 DVEAAYTEAYRTGCKGVTVYRDGS 749 Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 35/151 (23%) Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 F RVA +AL E E + A FY L+++ F L +GT H + +CF+ Sbjct: 28 GIFRRVADWVALPEDEATRSGWADTFYELMATKRFCPGGRVLAGAGTAHGNVLNCFVQGA 87 Query: 377 ----PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P GI ++ A++ K GG G + P V Sbjct: 88 TAHPPASFEGIMEVAKKLALVTKVGGGNGVNLDPY----------------------VYR 125 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + V V +G AY++ H DVE+F+ Sbjct: 126 ERPVGVVRG-------IAYMDAAHRDVEDFI 149 >gi|262275642|ref|ZP_06053451.1| ribonucleotide reductase of class II (coenzyme B12-dependent) [Grimontia hollisae CIP 101886] gi|262219450|gb|EEY70766.1| ribonucleotide reductase of class II (coenzyme B12-dependent) [Grimontia hollisae CIP 101886] Length = 718 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 156/630 (24%), Positives = 266/630 (42%), Gaps = 70/630 (11%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT- 374 F RVA LA E E +EK EF L T H +S C ++ Sbjct: 50 FKRVARALADLEEESVREKWYNEFLWALRHGAIPAGRITSNAGAFEHKPATSTINCTVSG 109 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I G + E + K G+G D++ +R GA + G + G + F+ + + Sbjct: 110 TIEDSMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKM 169 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA ++ H DV EF+ ++ G R N + I + F++ V Sbjct: 170 CFTVSSAGGRRGAQMGTMDIRHPDVMEFIRAKREDG----RLRQFNLSLLITEEFIEAVK 225 Query: 495 QNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQA-----DRGEI--KVFRKISAV 543 + W L P + D DLY + I + ++ + D+G + K++R + A Sbjct: 226 NDGEWQLIFPVTEKEARQDGTDLYNDD-NIVWADWPSKEGLLEDDQGRVACKIYRTMPAR 284 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +++ ++ P D N + + ++N C E L C LG Sbjct: 285 NLWNVIMSSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPP----YGACLLG 340 Query: 604 SINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 S+NL N +FD++ + R+LDNV++IN +EK ++ T R G+ Sbjct: 341 SVNLTKFVRDPFTENARFDWEMYRKVVAIFTRMLDNVVEINQLPLEKQREEIQTKRRHGM 400 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------- 711 G +G S L +L Y S ++ ++ + ++ +V+LA E+G Sbjct: 401 GFLGLGSTLTMLRHKYGSAASIAFTEQISQEMAITGWEQAVKLAAEKGPAPVMEQEFEVT 460 Query: 712 ------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 + + G+ D + G + + M + + D ++K V+T G R ++ Sbjct: 461 PKMMRQRPEMAKDGIKVGDKVKGKVLHAKYSRYMQQIGEVRPDLIEKLVET-GGRFTHHS 519 Query: 765 AIAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWD 817 +IAPT TI AN S I+PS+ + Y ++ + V+ F L R+L + Sbjct: 520 SIAPTGTISLSLAN--NASNGIEPSFAHHYTRNVIKPGKKSKESVDVFSFELLAYRELIN 577 Query: 818 -EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874 +AM K E++P+ TA +I P +E + Q+WID +++ N Sbjct: 578 AKAMPYSTKEE-------EQLPE----YFITADDITPSQHVEVQAAAQRWIDSSISKTAN 626 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + D P D IY A+ GLK R Sbjct: 627 VPTDFPFENFKD-IYMDAYDKGLKGCTTFR 655 >gi|254881426|ref|ZP_05254136.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642814|ref|ZP_07997452.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A] gi|254834219|gb|EET14528.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317385558|gb|EFV66499.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A] Length = 848 Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 168/702 (23%), Positives = 293/702 (41%), Gaps = 117/702 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A + Y LL Sbjct: 19 FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYQNGLNAQQLYELL 78 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGL 400 F ++ S T + + LS+CF+ + D GI +E L K GG+ Sbjct: 79 DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + + D FM+ + Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYK-------------------- 233 Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578 + Y +D+ VF K I A ALW+K++ +++ P + F D S P + + Sbjct: 234 --QQYPVDSDQ---PVFTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288 Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630 + S+N C EI L C L +INL ++ N FD+D + A R Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQR 344 Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665 ++D++ID+ IEK KKS R G+G+ Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + + Y + EA E +++ + I+ A +SV +A+ERGA++ + F Sbjct: 404 MLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLKEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833 + +Y K N + T V+ V+E D ++E ++ K+ + N Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562 Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 I+++ + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 563 QEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +AW G K R S + V ST K K +P P Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKP 664 >gi|268323545|emb|CBH37133.1| putative intein containing ribonucleotide reductase, large subunit [uncultured archaeon] Length = 919 Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 142/285 (49%), Gaps = 40/285 (14%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSIN+ N + D+++L + ++VR LD+VID N + + K +K +R IGLG Sbjct: 616 CNLGSINVSKFVENGEIDWERLKEAVWSSVRFLDDVIDENRYPLSKIEKMTKANRKIGLG 675 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MG L L I Y S +AV +A++ M+FI+ A S EL E+G++ +F+ S+W Sbjct: 676 IMGLAELLIKLKIAYDSKDAVLMAEKLMQFITNEARQCSTELGLEKGSFPNFELSVWST- 734 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 +D MRN+ IAPT TI I S Sbjct: 735 --------------------------YD---------AMRNATVTTIAPTGTIGIIGNCS 759 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P + +V+ N+ G +N K++ + + +I+++ GSI +I IP+ Sbjct: 760 SGIEPLFAVAFVR-NVMGGMLEINKLFEEIAKEKGFYSKELIAEIAKR-GSIQDIAGIPE 817 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSG 882 D+K++ TA +I P W + + Q++ D A +++NL D G Sbjct: 818 DIKRVFVTALDISPEWHVRMQAAFQRYTDNAVSKTVNLPSDATRG 862 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 138/296 (46%), Gaps = 40/296 (13%) Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFH 350 ++L RY L R IE P F RVA +A E K E FY L+ S Sbjct: 36 EVLKRRYLLKDELERVIETPSQMFARVAKAIARAEQNYGKSKAEVKKIEQRFYLLMHSLE 95 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+GT QL++CF+ V D + GIFGA+++ A + + GG G ++ +R Sbjct: 96 FLPNSPTLMNAGTDLGQLAACFVIPVEDSIEGIFGAVKDMARIHQSGGGTGFSFSRLRPK 155 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G + T G + G + F++V + + QGGKR+GA + H D+ EF+ + Sbjct: 156 GDVVKSTGGVASGPVSFMRVFDVATDVIKQGGKRRGANMGIICADHPDILEFIRAK---- 211 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 +R + NT+ + D FM V +N + L +P ++ Sbjct: 212 -ERGEFANFNTSVAVTDEFMHAVDRNEEYELINPRTKEEV-------------------- 250 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 RKI A ++ +++T ++ G P I F D N +P VG + ++N C Sbjct: 251 -------RKIKAGEVFNEIVTYAWKIGDPGIIFLDEINRHNPVSAVGRIEATNPCV 299 >gi|152985283|ref|YP_001351609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudomonas aeruginosa PA7] gi|150960441|gb|ABR82466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudomonas aeruginosa PA7] Length = 714 Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 151/572 (26%), Positives = 249/572 (43%), Gaps = 70/572 (12%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 108 TIQDSMDDILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 167 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 168 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 223 Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEI--KVFRKISAV 543 Q+A W L P DE+ DL D + +E+ +NY ++AD G + KV+ ++ A Sbjct: 224 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPTQ-DNYVQRAD-GLVACKVYGQVRAR 280 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW ++ ++ P D N + + ++N C E L C LG Sbjct: 281 HLWDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLG 336 Query: 604 SINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 S+NL F + +FD+D+ +R R+LDNV++IN +++ ++ R G+ Sbjct: 337 SVNLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLQQQRQEILGKRRHGM 396 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSF 711 G +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 397 GFLGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVT 456 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNC 763 L + D + +R + + SR P EL + + G R ++ Sbjct: 457 AEMLRKRPEMAADGYKVGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHH 514 Query: 764 MAIAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRD 814 +IAPT TI AN S I+PS+ +NL + + + V S+ + L R Sbjct: 515 SSIAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRT 570 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQS 872 L + + D S R+PD TA + P ++ + QKW+D +++ Sbjct: 571 LVNAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKT 620 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 N+ D P D IYR AW GLK R Sbjct: 621 ANVPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 651 >gi|294775362|ref|ZP_06740884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides vulgatus PC510] gi|294450819|gb|EFG19297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides vulgatus PC510] Length = 848 Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 168/702 (23%), Positives = 293/702 (41%), Gaps = 117/702 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A + Y LL Sbjct: 19 FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGL 400 F ++ S T + + LS+CF+ + D GI +E L K GG+ Sbjct: 79 DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + + D FM+ + Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYK-------------------- 233 Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578 + Y +D+ VF K I A ALW+K++ +++ P + F D S P + + Sbjct: 234 --QQYPVDSDQ---PVFTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288 Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630 + S+N C EI L C L +INL ++ N FD+D + A R Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQR 344 Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665 ++D++ID+ IEK KKS R G+G+ Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + + Y + EA E +++ + I+ A +SV +A+ERGA++ + F Sbjct: 404 MLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLKEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833 + +Y K N + T V+ V+E D ++E ++ K+ + N Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562 Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 I+++ + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 563 QEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +AW G K R S + V ST K K +P P Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664 >gi|54309322|ref|YP_130342.1| hypothetical protein PBPRA2142 [Photobacterium profundum SS9] gi|46913758|emb|CAG20540.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 716 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 163/663 (24%), Positives = 279/663 (42%), Gaps = 72/663 (10%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 D A++ ++I +Y L +G I E F RVA LA + EK+K +YN Sbjct: 15 DIAYQSTSMEIWDSKYRLKTKHGIAIDETVDDTFKRVARALA--DLEKDKVKEHWYNEFL 72 Query: 348 SFHFMCSTPT---LFNSGT--RHPQLSSCFLT---TVPDDLYGIFGALQENAMLAKYSGG 399 + P N+G P S+ T T+ D + I G + E + K G Sbjct: 73 WALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCG 132 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D++ +R GA + G + G + F+ + + V+ G R+GA ++ H D+ Sbjct: 133 IGYDFSTLRPRGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDI 192 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLH- 511 +F+ ++ G R N + I + F++ V + W+L P + DLH Sbjct: 193 IDFIRAKREDG----RLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDNLDLHT 248 Query: 512 --DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + ++ + E + R K++R + A LW ++T ++ P D N Sbjct: 249 DSSVMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQ 308 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANN-QFDYDKLAST 624 + + ++N C E L C LGSINL F N FD+D Sbjct: 309 MNNNWFCEEIRATNPCGEQPL----PPYGACLLGSINLTKFVRDPFTNTAAFDWDGFRRV 364 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + T R+LDNV++IN +EK + R G+G +G S +L Y S ++ + Sbjct: 365 VATFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLKHKYGSAASIAFTE 424 Query: 685 ESMEFISFHAISASVELAQERGAYSSF-------------KGSLWDQGVFPIDSI-GLLA 730 + + ++ ++ LA+E+GA + + D G+ D I G + Sbjct: 425 QVAQELAITGWKEALSLAKEKGAAPVMEQEFTITAKMIRQRPEMADDGIKVGDKIKGKVL 484 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI----ANICGVSQSIDPSY 786 + M + + + EL + + T+G R ++ +IAPT TI AN S I+PS+ Sbjct: 485 HAKYSRYMQQVAEIE-PELIEALSTVGARFTHHSSIAPTGTISLSLAN--NASNGIEPSF 541 Query: 787 QNLYVKSNM-SGDFTV--VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + Y ++ + +G T VN + L R+L + K S ++P+ Sbjct: 542 AHHYTRNVIVTGKKTKENVNVYSFELLAYRELVNS------KAMPYSTDEETQLPE---- 591 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 TA +I P ++ + Q+WID +++ N+ D P D IY A+ GLK Sbjct: 592 YFITADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQD-IYMNAYDKGLKGCT 650 Query: 902 YLR 904 R Sbjct: 651 TFR 653 >gi|194246585|ref|YP_002004224.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma mali] gi|193806942|emb|CAP18374.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma mali] Length = 830 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 165/699 (23%), Positives = 296/699 (42%), Gaps = 98/699 (14%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA--FEYLGLQILYDRYFLHINGSRIEM 316 Y +E +K +L + + + YL + YE+DF + Y ++ +Y +I Sbjct: 167 YFKEEIKPKLKYFYSLKAKIDYLLENNYYEKDFFNHYTYEQIKTIY----------QIAY 216 Query: 317 PQAFFMRVAMGL-------ALKETEK-------EKRAV--EFYNLLSSF----------- 349 + F MG+ ALK K E R V Y+ +F Sbjct: 217 AEKFQFASFMGIFKFYNDYALKNRNKTKYLETYEDRLVVNALYHAHGNFILAKKLIKSLI 276 Query: 350 --HFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 +F +TPTL NSG ++ + SCFL D L I + + L+K GG+ + + Sbjct: 277 QQNFTPATPTLLNSGKKYRGEFVSCFLIEGGDSLNDIARIFEFSMQLSKIGGGVSINLSN 336 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I +GV+ K+ + +Q G+R GA YL +H D+++FL+ + Sbjct: 337 LRAKGETIKKNANVCKGVVGVCKLLDHGFRYADQMGQRNGAGAVYLNVFHADIKDFLNTK 396 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D+ R ++ IPD ++ N +F P V YG+ F N + Sbjct: 397 KLNADEDVRVKTLSLGVVIPDKMLELAKNNEMMYIFYPHTV---FLEYGQNFADISINMD 453 Query: 527 RQAD---RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 D + + I+ L + + E+G+P+I + D N+ + SN Sbjct: 454 YWYDILVKNSKIKKKIINPRNLLDLIAQLQGESGYPYIMYCD--NVNKNNMLNLPIKFSN 511 Query: 584 LCTEI---TLNS------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 LCTEI T+ S EE + S NL + N + + T+ A+ V+++ Sbjct: 512 LCTEILQPTITSHYADYDKREEDRIGMDISCNLSSGHMGNMIKNNSIKETVFMAMEVMNS 571 Query: 635 V-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V ++ + + K+N +R++G G+MG + I + S E +++ D ++++ Sbjct: 572 VALNTDIAYVPGVAKANRLNRSVGFGIMGHHEFIAKNFIFFGSEEDLDLIDVFFNAVNYY 631 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDE 748 ++ S++ A+ G + +F S + G + + +L + + + +LP W E Sbjct: 632 SLLHSMQKAKTTGQKFFNFSKSKYADGSYFNNRGEILPKNIKVKNIFKHIKLPSNKDWTE 691 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK V G+ NS+ +A+AP +I I + S+ P Sbjct: 692 LKTNVIKYGLYNSHRLAVAPNGSIGYIMSTTPSLTP------------------------ 727 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +KQ L +E + K + + G + ++ TA++I+ LI+ + QK ID Sbjct: 728 -IKQ--LIEERTYGNSKTYFPTPG-----LEQFSFMYETAYKINKYRLIDVIATAQKHID 779 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q S L + + + ++L Y A G+KT YY R++ Sbjct: 780 QGISFELGITSDITTRELQKYYLYAHYQGIKTLYYTRTQ 818 >gi|160885202|ref|ZP_02066205.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483] gi|237714835|ref|ZP_04545316.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237720010|ref|ZP_04550491.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260174146|ref|ZP_05760558.1| putative ribonucleoside reductase [Bacteroides sp. D2] gi|262406893|ref|ZP_06083442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 2_1_22] gi|293368853|ref|ZP_06615457.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides ovatus SD CMC 3f] gi|294643070|ref|ZP_06720909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides ovatus SD CC 2a] gi|294807801|ref|ZP_06766591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides xylanisolvens SD CC 1b] gi|299147888|ref|ZP_07040951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 3_1_23] gi|315922411|ref|ZP_07918651.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109552|gb|EDO11297.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483] gi|229445160|gb|EEO50951.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229450562|gb|EEO56353.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262355596|gb|EEZ04687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 2_1_22] gi|292636158|gb|EFF54646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides ovatus SD CMC 3f] gi|292641589|gb|EFF59768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides ovatus SD CC 2a] gi|294444998|gb|EFG13675.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides xylanisolvens SD CC 1b] gi|298514071|gb|EFI37957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 3_1_23] gi|313696286|gb|EFS33121.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 847 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 167/700 (23%), Positives = 299/700 (42%), Gaps = 109/700 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E++ A E Y+ Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARVESKYPNALTAKELYD 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG I +E L K G Sbjct: 77 LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ DE Y +++ Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAV----------DEKP-----YVQQY 236 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 I D + ++I A LW+K++ +++ P + F D S P + Sbjct: 237 PI---------DSAQPTFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFQKHVALAQ 343 Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665 R++D++ID+ IE+ ++ H RA+ G+G+ Sbjct: 344 RIMDDIIDLELEKIERIMTKIDEDPENEEVKHAERALWEKIYKKSGQGRRTGVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + F Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNSEREQNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I LA +L ++++KK G RN C+ IAPT T + + + I+P Sbjct: 460 IQRLAAADPKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836 + +Y + ++ + T V+ V+E D ++E ++ K+ +D + + Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPARRYTQE 564 Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891 D+L AT+ ++D + ++ R QKW+D + S+ + L + L + +Y + Sbjct: 565 EIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 AW G K R S + V ST D K P P Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPP 664 >gi|298479867|ref|ZP_06998067.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. D22] gi|298274257|gb|EFI15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. D22] Length = 847 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 167/700 (23%), Positives = 299/700 (42%), Gaps = 109/700 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E++ A E Y+ Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARVESKYPNALTAKELYD 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG I +E L K G Sbjct: 77 LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ DE Y +++ Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAV----------DEKP-----YVQQY 236 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 I D + ++I A LW+K++ +++ P + F D S P + Sbjct: 237 PI---------DSAQPAFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFQKHVALAQ 343 Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665 R++D++ID+ IE+ ++ H RA+ G+G+ Sbjct: 344 RIMDDIIDLELEKIERIMTKIDEDPENEEVKHAERALWEKIYKKSGQGRRTGVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + F Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNSEREQNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I LA +L ++++KK G RN C+ IAPT T + + + I+P Sbjct: 460 IQRLAAADPKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836 + +Y + ++ + T V+ V+E D ++E ++ K+ +D + + Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPARRYTQE 564 Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891 D+L AT+ ++D + ++ R QKW+D + S+ + L + L + +Y + Sbjct: 565 EIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 AW G K R S + V ST D K P P Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPP 664 >gi|150002611|ref|YP_001297355.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482] gi|149931035|gb|ABR37733.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482] Length = 848 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 168/702 (23%), Positives = 293/702 (41%), Gaps = 117/702 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A + Y LL Sbjct: 19 FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGL 400 F ++ S T + + LS+CF+ + D GI +E L K GG+ Sbjct: 79 DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + + D FM+ + Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYK-------------------- 233 Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578 + Y +D+ VF K I A ALW+K++ +++ P + F D S P + + Sbjct: 234 --QQYPVDSDQ---PVFTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288 Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630 + S+N C EI L C L +INL ++ N FD+D + A R Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQR 344 Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665 ++D++ID+ IEK KKS R G+G+ Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + + Y + EA E +++ + I+ A +SV +A+ERGA++ + F Sbjct: 404 MLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLKEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833 + +Y K N + T V+ V+E D ++E ++ K+ + N Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562 Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 I+++ + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 563 QEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +AW G K R S + V ST K K +P P Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKP 664 >gi|152974879|ref|YP_001374396.1| ribonucleoside-diphosphate reductase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023631|gb|ABS21401.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH 391-98] Length = 462 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 121/484 (25%), Positives = 218/484 (45%), Gaps = 55/484 (11%) Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKGA YL +H D+ EFLD +K D++ R ++ +P F + +N + +F Sbjct: 2 QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P V + + + +I E ++ K +SA + K+ + E+G+P++ Sbjct: 62 APYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKSLDLSARDMLIKIAMIQLESGYPYLM 121 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 FK N + P +++G V SNLCTEI L +SE CNLGS+N++ Sbjct: 122 FKSNANQQHPLKNIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNV 181 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + + + + + V D + N T++KA H+ +GLG M L Sbjct: 182 MENKEIR-EAVHAGMEALTAVSDMTVIPNAPTVKKANDELHS---VGLGAMNLHGYLAKN 237 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID 724 I Y S EA E +++++I S+ +A+E+G + F S + G + D Sbjct: 238 KIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGTYFEKYETTD 297 Query: 725 SIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + +V+ + ++ W LK+ V+ G+ NS +AIAPT +I+ + + S+ Sbjct: 298 YSPVTEKVQQLFEGIYIPTKEDWTSLKEEVQKYGLYNSYRLAIAPTQSISYVQNATSSVM 357 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +V++++ R + + Y + D Sbjct: 358 P---------------------IVSQIESRTYANATTYYPMPY----------LSKDTFW 386 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902 + +A++++ LI+ + Q+ IDQ S LY++ + S ++L Y A GLK+ YY Sbjct: 387 YYKSAYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYY 446 Query: 903 LRSR 906 R+R Sbjct: 447 TRTR 450 >gi|160889318|ref|ZP_02070321.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492] gi|317479653|ref|ZP_07938778.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36] gi|156861325|gb|EDO54756.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492] gi|316904218|gb|EFV26047.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36] Length = 845 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 164/697 (23%), Positives = 300/697 (43%), Gaps = 113/697 (16%) Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333 +D Y LKY F + L ++ ++Y + + I + P+ R+A +A E Sbjct: 8 YDEAY-GESLKY---FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEA 63 Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385 + + E + LL F ++ S T + + LS+CF+ V D YG IF Sbjct: 64 KYPNPLSSEELFGLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFK 123 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +E L K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R Sbjct: 124 IDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR- 182 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ + H D E F+D + G + N + + D FM+ + +T P Sbjct: 183 GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKPYTQQYPI 238 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 + + E A++ + I A ALW+K++ +++ P + F D Sbjct: 239 DAT----------EPAFQ--------------KDIDASALWKKIVHNAWKSAEPGVLFWD 274 Query: 566 PCNIRS-PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616 S P + + + S+N C EI L C L +INL ++ N F Sbjct: 275 TILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYF 330 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEK----------AKKSNHTHRAI---------- 656 D++ + A R++D++ID+ IE+ ++ HT R + Sbjct: 331 DFELFKKHVALAQRIMDDIIDLELEKIERIMSKIDADPESEDVKHTERVLWQKIYKKSAQ 390 Query: 657 ----GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 G+G+ L L + Y + EA E +++ + ++ +A +S+E+A+ERGA+ + Sbjct: 391 GRRTGVGITAEGDMLAALGLRYGTEEATEFSEQVHKTVALNAYRSSIEMAKERGAFEVYD 450 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F I L E E+ ++E+KK G RN C+ IAPT T Sbjct: 451 TEREKNNPF----INRLREADPEM---------YEEMKK----YGRRNIACLTIAPTGTT 493 Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK------ 825 + + + I+P + +Y + ++ + T V+ ++E D ++E ++ K Sbjct: 494 SLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWME 551 Query: 826 ---YHDGSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 Y+ E + ++K AT+ ++D + ++ R QKW+D + S+ + L Sbjct: 552 AQGYNPAKRYTQEEVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPN 611 Query: 880 PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + L + +Y +AW G K R S + V ST Sbjct: 612 DVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 648 >gi|90410606|ref|ZP_01218622.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK] gi|90328847|gb|EAS45131.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK] Length = 716 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 161/674 (23%), Positives = 280/674 (41%), Gaps = 78/674 (11%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339 A+++ D A++ ++I +Y L +G I E F RVA LA + EK+K Sbjct: 7 ASEVSQTIDIAYQSTSMEIWNSKYRLKTKHGIAIDETVDDTFKRVARALA--DLEKDKVK 64 Query: 340 VEFYNLLSSFHFMCSTPT---LFNSGT--RHPQLSSCFLT---TVPDDLYGIFGALQENA 391 +YN + P N+G P S+ T T+ D + I G + E Sbjct: 65 EHWYNEFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAG 124 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 + K G+G D++ +R GA + G + G + F+ + + V+ G R+GA Sbjct: 125 LTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGT 184 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP------- 504 ++ H D+ +F+ ++ G R N + I + F++ V + W+L P Sbjct: 185 MDIRHPDIIDFIRAKREDG----RLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAK 240 Query: 505 DEVSDLH---DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 + DLH + ++ + E + R K++R + A LW ++T ++ P Sbjct: 241 QDKLDLHTDSSIMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGF 300 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANN-QF 616 D N + + ++N C E L C LGSINL F N F Sbjct: 301 ILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSINLTKFVRDPFTNTAAF 356 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+D + R+LDNV++IN +EK + R G+G +G S +L Y S Sbjct: 357 DWDGFRRVVAIFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLTHKYGS 416 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSF-------------KGSLWDQGVFPI 723 ++ ++ + ++ ++ LA+E+GA + + D G+ Sbjct: 417 AASIAFTEQVAQELAISGWKEALSLAKEKGAAPVMDQVFTITAKMMRQRPEMADDGIKVG 476 Query: 724 DSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI----ANICGV 778 D I G + + M + + + EL + + T+G R ++ +IAPT TI AN Sbjct: 477 DKIKGKVLHAKYSRYMQQVAEIE-PELIEALSTVGARFTHHSSIAPTGTISLSLAN--NA 533 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+PS+ + Y + + +V K ++ D L Y + + N + +P Sbjct: 534 SNGIEPSFAHHYSR-----------NVIVTGKKTKESVDVYSFELLAYRE--LVNSKAMP 580 Query: 839 ------DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890 L + TA +I P ++ + Q+WID +++ N+ D P D IY Sbjct: 581 YSTDEETQLPEYFITADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQD-IYM 639 Query: 891 QAWLMGLKTTYYLR 904 A+ GLK R Sbjct: 640 NAYDKGLKGCTTFR 653 >gi|254455135|ref|ZP_05068570.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 238] gi|198263545|gb|EDY87817.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 238] Length = 535 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 151/599 (25%), Positives = 254/599 (42%), Gaps = 98/599 (16%) Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTV 376 + RVA GLA + ++K +F+ + F + L GT RH L + F + T+ Sbjct: 5 WARVANGLAAHKALAVRDKVVTDFHAAMHDFKVLPGGRILSGCGTARHVTLCNTFVMRTI 64 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD + GI L++ A+ + GG+G D++ +R G + G + ++ G + + + + T Sbjct: 65 PDSVDGIMDTLKDAALTMQMGGGVGFDFSMLRPSGTVVRGLDCRAAGPLAAMDIFDATCK 124 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + G R GA+ A + H ++E F+ N DR R + N + + FM + + Sbjct: 125 MIVSGMGR-GAMMATMRCDHPNIEAFI----NAKSDRTRLRNFNMSVMATNEFMAAIAAD 179 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W L + V R++ A LW ++ + Sbjct: 180 ETWDLV-----------------------------WQGAVMRRLRARDLWNAIMKQTYAA 210 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFA 612 P + F D N +P +++ V+ ++N C E L C L SINL A F Sbjct: 211 AEPGVLFIDRINAVNPLRYLEVIAATNSCAEQPL----PPNGTCPLASINLAQLVSAPFT 266 Query: 613 NN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + + D +L +R AVR+ DN +D++ ++ ++ R IG+G+ G +A+ ++ Sbjct: 267 TDARLDVTQLRQLVRVAVRMFDNSLDVSRFALDAQRQQAQDQRRIGVGVTGVANAIAMMG 326 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI-DSIGLLA 730 + Y S +AV + M+ I A AS LA ERGA FP+ D+ LA Sbjct: 327 VRYGSSKAVFLLGSWMQTIQNAAYGASALLANERGA-------------FPLYDADKHLA 373 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNL 789 R A+N+ +++ V+ G+RN IAPT T + VS I+P + Sbjct: 374 S-RGIQALNQ-------DIRALVEQHGLRNGTLTTIAPTGTTSMFAENVSSGIEPIFSTS 425 Query: 790 YVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHA 846 + ++ T N +E + W A I + D + + PDD + A Sbjct: 426 FTRT-----ITKANGEKSSERVMDYAAWQFAQIYGPNAALPDSFVTVADLSPDDHIAMQA 480 Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901 A Q+WID ++++N D P + IYR A+ G K TTY Sbjct: 481 AA---------------QEWIDSGISRTVNCPEDIPF-EAFKGIYRAAYDAGCKGCTTY 523 >gi|121997262|ref|YP_001002049.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorhodospira halophila SL1] gi|121588667|gb|ABM61247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorhodospira halophila SL1] Length = 721 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 152/627 (24%), Positives = 263/627 (41%), Gaps = 62/627 (9%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHF--MCSTPTLFNSGT--RHPQLSSCFLT-- 374 + RVA LA E + K+ F L + + + + N+G P S+ T Sbjct: 51 YQRVARALAEVEETEAKQEHWFERFLWALRHGAVPAGRIISNAGAWDHKPATSTINCTVS 110 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GI + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 111 GTIHDSMDGILKRVHEAGLTLKSGAGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 170 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA A + H DV +F+ ++ G R N + I D FM+ + Sbjct: 171 MCFTVSSAGGRRGAQMATFDVGHPDVTDFIRAKREDG----RLRQFNLSLLITDAFMQAM 226 Query: 494 TQNAGWTLFSP---DEVS----DLHD---LYGKEFEIAYENYERQAD-RGEIKVFRKISA 542 + W L P DEV+ DL D + +E+ E Y + R +++R++ A Sbjct: 227 EADEEWPLAFPLTDDEVAAEGIDLQDPEQVLWREWPTR-EGYVTDGEGRVACRIYRRVKA 285 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW ++T ++ P D N + + ++N C E L C L Sbjct: 286 RHLWNLIMTSTYDYAEPGFILIDQYNELNNNWFCEEIRATNPCGEQGLPP----YGACLL 341 Query: 603 GSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 GSINL + +FD+++ + R+LDN ++IN +E+ + R G Sbjct: 342 GSINLTMFVRDPFTPQARFDWEEFREAVAVFTRMLDNTVEINGLPLEQQRAEIQRKRRHG 401 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSS 710 +G +G S + +L + Y +V +E + ++ +ELA+E+G Y Sbjct: 402 MGFLGLGSTVTMLRMKYGDAASVAFTEEVAKQMALTGWRTGLELAKEKGPAPIMEEIYEI 461 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PWDELKKRVKTIGMRNSNCM 764 + + D + ++ + R SR EL + IG R ++ Sbjct: 462 TPELMRKRPELREDGYEVGEQIPGRVLWGRYSRYMQRIADEEPELVDELAQIGARFTHHS 521 Query: 765 AIAPTATIANICG--VSQSIDPSYQNLYVKSNM-SGDFT--VVNSFLVNELKQRDLWDEA 819 +IAPT TI+ S I+PS+ + YV++ + G T V+ F L R D Sbjct: 522 SIAPTGTISLSLANNASNGIEPSFAHHYVRNVIREGRKTKEPVDVFSFELLAYRHFID-- 579 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYL 877 D G G ++PD +A ++ P ++ + QKW+D +++ N+ Sbjct: 580 --GDALPEGGEEGQ-GKLPD----YFISADQVTPKQHVDIQAAAQKWVDSSISKTANVPT 632 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 D P D IYR A+ GLK R Sbjct: 633 DYPYEDFKD-IYRYAYQQGLKGCTTFR 658 >gi|158335535|ref|YP_001516707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acaryochloris marina MBIC11017] gi|158305776|gb|ABW27393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acaryochloris marina MBIC11017] Length = 649 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 172/663 (25%), Positives = 283/663 (42%), Gaps = 97/663 (14%) Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNS--GTRHPQLSSCFLTTVP 377 RVA +A E+ E+++ +F ++L F+ L N GTR L +CF+ + Sbjct: 36 RVATYVASAESTPEQQSYWQEKFLSILQPMKFVPGGSILANCDHGTRG--LLNCFVLSAE 93 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTP------VRGLGAHIHGTNGKSQGVIPFLKVA 431 D ++ I + ++ + K+ GG+G + +R GA +GK+ G L + Sbjct: 94 DHIHDITKLVSDSVLTTKFRGGVGINIGAEGSKGYIRQKGAPFQ--DGKALGPCAVLDMV 151 Query: 432 NDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 ++ + + G K R+GA + H D+ EF+ + + T D N A + + Sbjct: 152 SENSKKITTGNKARRGAFLFSMNWKHPDIWEFIQAKTQS------TIDANFAKSVMEELA 205 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----GEIKV------FRKI 540 + Q+ + +++ LH G + + N E + DR I V F K+ Sbjct: 206 QLAQQDEP-SQGKQEKLKALHTEVGTAWVETHLNPEGKRDRRWHNANISVQLDDEFFAKL 264 Query: 541 -----SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 A LW+ M T P + D RSP + V +N C EI L +S Sbjct: 265 DQGDEEANKLWQAMAENAHATADPGLLLIDNAKRRSPIRDF--VTCTNPCGEIFLPPNS- 321 Query: 596 ETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKK 648 CNLGS+ +L F N + D+D LA T+R A+R LDNV+D++ T ++ Sbjct: 322 ---ACNLGSL-VLTKFVRRTAEGNIEIDWDDLAETVRIAIRFLDNVLDVSEFATPDQKHN 377 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R +GLG+MG+ L L IPY S +E D +I+ HA S +A E+GA Sbjct: 378 VRDVFRQLGLGIMGWADYLKLARIPYDSARHLEEIDRWGSWIAAHAYRTSEAIAAEKGAC 437 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +WDQ + I + D ++ + + RNS ++IAP Sbjct: 438 -----GVWDQ-IKDIQTGNPFERWMDSEGNYYNGTEAHHNDRQDLTQVPRRNSTVLSIAP 491 Query: 769 TATIANICGVSQSIDPSY-----QNLYVKSNMSGD--FTVVNSFLVN-ELKQRDLWDEAM 820 T +IA + S + +P + + ++V ++ S ++N +L L + D Sbjct: 492 TGSIAQLAACSWAFEPDFGLTLWKQVFVDASRSQQNWVQILNPYLDELNLPEAD------ 545 Query: 821 ISDLKYHDGSIG--NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 +++ GS+ N + ++ + A EI P W I S+ Q WID + S + L Sbjct: 546 -AEIVKQTGSLADTNYGKQHPEIARSFKIAREIPPGWHILVQSKWQSWIDSSISKTINL- 603 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV----DGKLNAVPVTDPNSS 934 P+ +D I K Y L EK+ LKGV G L++ P+ NS Sbjct: 604 -PAHATVDEI---------KQIYRL-------AEKAGLKGVTIYRSGTLDSEPIKVGNSE 646 Query: 935 THS 937 S Sbjct: 647 KDS 649 >gi|270295907|ref|ZP_06202107.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273311|gb|EFA19173.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 845 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 164/697 (23%), Positives = 300/697 (43%), Gaps = 113/697 (16%) Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333 +D Y LKY F + L ++ ++Y + + I + P+ R+A +A E Sbjct: 8 YDEAY-GESLKY---FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEA 63 Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385 + + E + LL F ++ S T + + LS+CF+ V D YG IF Sbjct: 64 KYPNPLSSEELFGLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFK 123 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +E L K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R Sbjct: 124 IDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR- 182 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ + H D E F+D + G + N + + D FM+ + +T P Sbjct: 183 GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKPYTQQYPI 238 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 + + E A++ + I A ALW+K++ +++ P + F D Sbjct: 239 DAT----------EPAFQ--------------KDIDASALWKKIVHNAWKSAEPGVLFWD 274 Query: 566 PCNIRS-PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616 S P + + + S+N C EI L C L +INL ++ N F Sbjct: 275 TILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYF 330 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEK----------AKKSNHTHRAI---------- 656 D++ + A R++D++ID+ IE+ ++ HT R + Sbjct: 331 DFELFKKHVALAQRIMDDIIDLELEKIERIMSKIDADPESEDVKHTERVLWQKIYKKSAQ 390 Query: 657 ----GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 G+G+ L L + Y + EA E +++ + ++ +A +S+E+A+ERGA+ + Sbjct: 391 GRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALNAYRSSIEMAKERGAFEVYD 450 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F I L E E+ ++E+KK G RN C+ IAPT T Sbjct: 451 TEREKNNPF----INRLREADPEM---------YEEMKK----YGRRNIACLTIAPTGTT 493 Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK------ 825 + + + I+P + +Y + ++ + T V+ ++E D ++E ++ K Sbjct: 494 SLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWME 551 Query: 826 ---YHDGSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 Y+ E + ++K AT+ ++D + ++ R QKW+D + S+ + L Sbjct: 552 AQGYNPAKRYTQEEVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPN 611 Query: 880 PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + L + +Y +AW G K R S + V ST Sbjct: 612 DVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 648 >gi|120436488|ref|YP_862174.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803] gi|117578638|emb|CAL67107.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803] Length = 850 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 171/687 (24%), Positives = 287/687 (41%), Gaps = 118/687 (17%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVE- 341 LKY F + L ++ ++Y L + I + P R+A +A E + E Sbjct: 23 LKY---FKGDDLAARVWVNKYALKDSDGNIYEQTPDDMHRRIAKEIARVEKKYPNSMSED 79 Query: 342 -FYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLTT---VPDDLYGIFGALQENAML 393 ++L+ +F ++ + +G +P LS+CF+ V D GI QE L Sbjct: 80 EVFDLIKNFKYIVPQGSPM-AGIGNPYQVGSLSNCFVIGNDGVSDSYGGIMKIDQEQVQL 138 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ + Sbjct: 139 MKRRGGVGHDLSHIRPKGSAVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSVS 197 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D E+F+D + G + N + I D FMK V N +T P + Sbjct: 198 INHPDAEDFIDAKMEQG----KVTGANVSVRIDDNFMKAVKNNGNYTQTYP--------V 245 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC-NIRSP 572 + K + K + I A LW+K++ +++ P I F D N P Sbjct: 246 FSK----------------DPKFSKDIEADKLWKKIVHNAWKSAEPGILFWDTVINESVP 289 Query: 573 QQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLAST 624 + + + S+N C EI L C L +INL ++ F+Y+ Sbjct: 290 DCYDDLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEEPFTEKAHFNYELFKKH 345 Query: 625 IRTAVRVLDNVIDINCHTIEK------------------------AKKSNHTHRAIGLGL 660 I A R++D++ID+ I+K +K R G+G+ Sbjct: 346 IGAAQRIMDDIIDLELEKIDKIIAKIDADPENEEVKAVEKNLWLNIRKKADEGRRTGIGI 405 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 L L I Y S E ++ + + + I+ A ASV+ A+ERGA+S F Sbjct: 406 TAEGDMLAGLGIRYGSKEGIDFSVDIHKKIALAAYRASVDTAKERGAFSIFDSEREKDNP 465 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 F I L E DE +L +D L+ G RN + IAPT T + + S Sbjct: 466 F----ILRLKEA-DE-------KLYYDMLE-----YGRRNIALLTIAPTGTTSLMTQTSS 508 Query: 781 SIDPSYQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDG 829 I+P + +Y K N + V+ V+E+ D W+E ++ ++ HD Sbjct: 509 GIEPVFLPVYKRRRKVNPNDKNARVD--FVDEVG--DSWEEYVVFHHRFKEWMRANGHDT 564 Query: 830 SIGNIERIPDDLKKI----HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 + + D L K+ AT+ ++D + ++ QKWID + S+ + L + + L Sbjct: 565 NENYTQEELDKLVKLSPYYQATSNDVDWLSKVKMQGAVQKWIDHSISVTINLPNDASEDL 624 Query: 886 -DFIYRQAWLMGLKTTYYLRSRSATSV 911 +Y +AW G K R S + V Sbjct: 625 VGKLYLEAWEAGCKGVTVYRDGSRSGV 651 >gi|323705616|ref|ZP_08117190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacterium xylanolyticum LX-11] gi|323535093|gb|EGB24870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacterium xylanolyticum LX-11] Length = 1180 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 166/342 (48%), Gaps = 46/342 (13%) Query: 579 VHSSNLCTEITLNSSSEETAV----CNLGSINL--LAHFANNQF--DYDKLASTIRTAVR 630 V S +C I ++ E+ + CNLGSINL + N ++ DY KL T+ AV Sbjct: 671 VTHSMICNGIVVHQCGEQPLLPYESCNLGSINLKNMLKEENGKYEVDYGKLRDTVHNAVH 730 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID N + +++ + R IGLG+MGF L +L+IPY S EAVE AD+ M+FI Sbjct: 731 FLDNVIDANKYPLQQIDEMTKGTRKIGLGVMGFADMLLMLNIPYNSEEAVEFADKLMKFI 790 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 + +AS+ELA++RG + + S++ Sbjct: 791 DEESKAASMELAEKRGVFKYYDKSIY---------------------------------- 816 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNE 809 + K I +RN+ IAPT TI+ I G S I+P + ++ M V VN Sbjct: 817 -KDKNIRLRNATTTTIAPTGTISIIAGTSSGIEPLFAIAMTRNVMDNTQLVEVNPVFKEV 875 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 +R + E ++ + G++ I+ IPDD+K++ TA +IDP+W I S QK +D Sbjct: 876 ALKRGFYSEELMKKIA-QQGTLKGIDGIPDDVKRVFVTAHDIDPVWHIRMQSAFQKHVDN 934 Query: 870 AQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 A S + + + + + +Y A+ +GLK R S S Sbjct: 935 AVSKTVNFRHDATVDDVREVYELAYKLGLKGVTIYRDGSRDS 976 Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 38/295 (12%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE------KEKRAVEFYNLLSSFHF 351 ++L RY NG +E + F RVA ++ + E EK +FY ++++ F Sbjct: 9 KVLERRYLAKDENGRVVETVEELFERVAKAISDVDKEYDINADTEKVKKKFYEMMTNLDF 68 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R G Sbjct: 69 LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A + T G + G + F+KV N AV QGG R+GA L H D+ EF+ ++ Sbjct: 129 ATVRSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFIQCKQ---- 184 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D + N + I + FMK V + + L P + N Sbjct: 185 DNNEITNFNISVGITEDFMKAVEKGQDYDLIDP-----------------HTN------- 220 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 KV + ++A +++ ++ M ++ G P I F D N ++P VG + S+N C Sbjct: 221 ---KVVKSLNAREVFKLIVEMAWKNGEPGIVFLDRINEKNPTPLVGEIESTNPCV 272 >gi|219681362|ref|YP_002456126.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa21-4] gi|199580629|gb|ACH89016.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa21-4] Length = 744 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 192/804 (23%), Positives = 331/804 (41%), Gaps = 114/804 (14%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DGT+ F+ RL E A + D S V + K +DG + SDL+ A+I I Sbjct: 9 DGTVQPFDPSRLNRWAEWAANYGVDWSEIAV--DAVKRCHDGCTTSDLQWAMI---EACI 63 Query: 211 EKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +++ +A + R L+ + +E K P ++ K R L Sbjct: 64 DRQTQAHANMAGRLLIGNVYKEAFGGFRKIPTLTDFYD-----------------KMRTL 106 Query: 270 H--ESM--MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323 + E M D +L YL + + +D + Y ++ D+Y + + E PQ FM Sbjct: 107 NLWEDMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166 Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ + ++ K++R ++ Y LS TP L ++ +SC + D Sbjct: 167 MALAV-MQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTA 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A + G+G R G + QG P+ N TAV N+ Sbjct: 226 ESIGIAEHIAYTMTCKQAGIG-ILLQTRSKGDGVRNKTIVHQGKTPYFACIN-TAVKANK 283 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 R G+ ++++ L L +++ M+ I + F++RV ++ W Sbjct: 284 QQTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWM 343 Query: 501 LFSPDEVSDLHD-LYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 L S + +LH +YG + FE+ Y+ R D + + +SA L + L +ETG Sbjct: 344 LVSFKDAPELHKRMYGSYELFEVEYDRVMRNPDIKK----KMVSARKLSKVFLKNRYETG 399 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------EETAVCNL 602 + F D N +P + + +SNLC EI L + + E A+C L Sbjct: 400 RVYPFFTDNMNTHTPFEDT--IWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFL 457 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 SI +A + +Y+++A + ++DNV+DI + E KKS R++G+G+ Sbjct: 458 SSI--VAGRVKPE-EYEEVA---YYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITN 511 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L Y+SP+ + E S+ AS+ LA+ERG + S + G P Sbjct: 512 LAHYLASNFTNYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTP 571 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQS 781 ++ EV + ++ T + W +L K +K G+R+S A P + + + Sbjct: 572 LEDYS--QEVDN--IVDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNG 627 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 + P V ELK K GS+ + + + Sbjct: 628 LYP----------------------VRELKMFK----------KSPQGSVFFLAPDSEVI 655 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL-------DFIYRQAW 893 ++ +A+++ +IE + QK+ QA S + Y+D +G K+ IY A Sbjct: 656 GDVYQSAWDVPEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIY--AH 713 Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917 +G+KT YY+ SR V +S+LK Sbjct: 714 RLGMKTQYYMNSR--VGVGESSLK 735 >gi|313887183|ref|ZP_07820879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Porphyromonas asaccharolytica PR426713P-I] gi|312923412|gb|EFR34225.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Porphyromonas asaccharolytica PR426713P-I] Length = 857 Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 168/707 (23%), Positives = 292/707 (41%), Gaps = 113/707 (15%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326 + + FD Y A L+Y F + L ++ +Y L + I + P+ R+A Sbjct: 1 MKQKTYSFDEAYQAT-LEY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56 Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PD 378 L E E +L+ F ++ S T + + LS+CF+ + PD Sbjct: 57 ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 GI +E L K GG+G+D + +R G+ + + S G++PF++ +++ V Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G+R GA+ + H D E F+D + G + N + I D FM+ V ++ Sbjct: 177 AQDGRR-GALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVED-- 229 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 KE+ Y + + E K R I A LW K++ + + Sbjct: 230 -----------------KEYVQTYPIHSK-----EPKFTRTIQARQLWDKIIYNAWRSAE 267 Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613 P + F D S P + + S+N C EI L C L +INL ++ N Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVCNP 323 Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645 FD+D + A+R++D++ID+ I+ K Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K+ R G+G+ L + + Y S EA+ A+E + + A ++SVELA+ER Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ + F I +A+ +L ++E+KK G RN + Sbjct: 444 GAFDLYDTEREKDNPF----IQRVAKADPKL---------YEEMKK----FGRRNIAMLT 486 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL 815 IAPT + + + S I+P + +Y + N+ D+T ++F + + Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNF 546 Query: 816 --WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 W +A D H+ S ++ + ATA ++D + ++ R Q+W+D + S+ Sbjct: 547 LTWMKANGYDPN-HNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISV 605 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK 917 + L + S + + +Y +AW G K T Y SRS + + K Sbjct: 606 TINLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLISEEQQK 652 >gi|254468285|ref|ZP_05081691.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [beta proteobacterium KB13] gi|207087095|gb|EDZ64378.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [beta proteobacterium KB13] Length = 719 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 158/636 (24%), Positives = 266/636 (41%), Gaps = 70/636 (11%) Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCF 372 E Q + RVA LA E +K E + + + N+G + P S+ Sbjct: 45 ETIQDTYERVAEALADVEPSNKKEWKENFLWALQHGAIPAGRITSNAGAKEHKPATSTIN 104 Query: 373 LTT---VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 T V D + I + E + K G+G +++ +R GA + G + G + F+ Sbjct: 105 CTVSGAVQDSMTDILDKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMD 164 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + V+ G R+GA A + H DV +F+ ++ G R N + I F Sbjct: 165 IYDRMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKREDG----RLRQFNLSCLITKEF 220 Query: 490 MKRVTQNAGWTL---------------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 M+ V ++ W L F E + D KE I E+ + A + Sbjct: 221 MEAVKSDSDWKLAFPVTEKEAKQDNLDFKDSEKTVWRDWPVKEKYIVKES-GKDAGKVAC 279 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 KV+ I A LW ++ ++ P D N + + ++N C E L Sbjct: 280 KVYSTIKAKRLWDVIMASTYDYAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPL---- 335 Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 E C LGS+NL N FD+D+ + R+LDNV++IN + K + Sbjct: 336 PEYGACLLGSVNLTMFVKNPFTDDAYFDWDEYKKVVSIFTRMLDNVVEINGLPLGKQRDE 395 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-- 707 R G+G +G S L ++ I Y PE+++ +E ++ +ELA+E+G+ Sbjct: 396 IMQKRRHGMGYLGLGSTLTMMKIKYGDPESIKFTEEVTRILAEEGWKVGIELAKEKGSAP 455 Query: 708 -----YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGM 758 + + L + D I + +V ++ M + S+ P +EL+ + G+ Sbjct: 456 IMEELFEITEQMLQMRPEMKADGIKVGDKVAGKVLMGKYSKYMQQFP-EELRNEIAENGV 514 Query: 759 RNSNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNM-SGDFT--VVNSFLVNELK 811 R S+ +IAPT TI AN S I+PS+ + Y ++ + G T V+ F L Sbjct: 515 RFSHHSSIAPTGTISLSLAN--NASNGIEPSFAHHYSRNVIREGKKTKEKVDVFSFELLA 572 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 R L ++ + + D E +PD I ++ + I++A+ QKWID Sbjct: 573 YRSLINDKAMPFSEKED------EVLPDYF--IDSSTIKTKNHVDIQAAA--QKWID--S 620 Query: 872 SLNLYLDEPSGKKL-DF--IYRQAWLMGLKTTYYLR 904 S++ ++ P+ DF IY A+ GLK R Sbjct: 621 SISKTINVPTDYDFEDFKEIYMYAYEKGLKGCTTFR 656 >gi|313111562|ref|ZP_07797361.1| NrdJa [Pseudomonas aeruginosa 39016] gi|310883863|gb|EFQ42457.1| NrdJa [Pseudomonas aeruginosa 39016] Length = 734 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 149/570 (26%), Positives = 242/570 (42%), Gaps = 66/570 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243 Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P DE+ DL D + +E+ I + +R KV+ ++ A L Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358 Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL F + +FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765 L + D +R + + SR P EL + + G R ++ + Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536 Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 IAPT TI AN S I+PS+ +NL + + + V S+ + L R L Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRILV 592 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874 + + D S R+PD TA + P ++ + QKW D +++ N Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWGDSSISKTAN 642 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + D P D IYR AW GLK R Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671 >gi|196248885|ref|ZP_03147585.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. G11MC16] gi|196211761|gb|EDY06520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. G11MC16] Length = 596 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 126/457 (27%), Positives = 204/457 (44%), Gaps = 59/457 (12%) Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541 FM+ V + + L PD + +E I E + D E ++V+RKI Sbjct: 117 FMEAVENDDEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 172 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + + P I F D N + + G V ++N C E L S VC Sbjct: 173 ARELWKLINICATYSAEPGIFFIDNANDMTNARAYGQKVVATNPCGEQPLAPYS----VC 228 Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL +INL A+ + + DY+KL T+ VR+ DNVID + +E+ KK R IG Sbjct: 229 NLAAINL-ANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 287 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L Y S E ++ DE + I+ A AS+ELA+E+G++ G + Sbjct: 288 LGVMGLADLLIYCEKEYGSEEGNQLVDELFQTIATTAYRASIELAKEKGSFPFLVGETEE 347 Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + ++R+ + R+P D +++ + G+RNS+ + +APT + + Sbjct: 348 E----------TRQLREAFINTGYMKRMPED-IRQDILQYGIRNSHLLTVAPTGSTGTMV 396 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVS ++P + Y +S G F V + +V E L H E Sbjct: 397 GVSTGLEPYFSFAYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 437 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893 P+ L TA ++ P + Q+W+D SL+ ++ P G +++ +Y + W Sbjct: 438 DPNHLPHWFVTAMDLSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 495 Query: 894 LMGLK--TTYYLRSRSATSVE-KSTLKGVDGKLNAVP 927 G K T Y SR A + K+ V+ +L +P Sbjct: 496 RCGAKGGTVYVDGSRDAQVLTLKAEENTVEEQLELIP 532 >gi|153808746|ref|ZP_01961414.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185] gi|149128572|gb|EDM19790.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185] Length = 796 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 156/631 (24%), Positives = 267/631 (42%), Gaps = 107/631 (16%) Query: 339 AVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAM 392 A E Y+LL F ++ S T + + LS+CF+ V D YG I +E Sbjct: 22 AKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQ 81 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 82 LMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSV 140 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D E F+D + G + N + + D FM+ + Sbjct: 141 SIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVE----------------- 179 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS- 571 GK + Y D ++I A LW+K++ +++ P + F D S Sbjct: 180 --GKPYVQQY-----PIDAANPAFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESV 232 Query: 572 PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623 P + + + S+N C EI L C L +INL ++ N FD+D Sbjct: 233 PDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKK 288 Query: 624 TIRTAVRVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGL 658 + A R++D++ID+ IE+ KKS R G+ Sbjct: 289 HVALAQRIMDDIIDLELEKIERIMKKIDEDPENEEVKRAERVLWEKIYKKSGQGRRT-GV 347 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + Sbjct: 348 GITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNNEREQN 407 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 F I LAE EL + E+KK G RN C+ IAPT T + + Sbjct: 408 NPF----IKRLAEADPEL---------YAEMKK----YGRRNIACLTIAPTGTTSLMTQT 450 Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDG 829 + I+P + +Y + ++ + T V+ V+E D ++E ++ K+ +D Sbjct: 451 TSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDP 508 Query: 830 SIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 + + D+L AT+ ++D + ++ R QKW+D + S+ + L + L Sbjct: 509 ARRYTQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDL 568 Query: 886 -DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + +Y +AW G K R S + V ST Sbjct: 569 VNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 599 >gi|42522732|ref|NP_968112.1| ribonucleotide-diphosphate reductase alpha subunit [Bdellovibrio bacteriovorus HD100] gi|81617878|sp|Q6MNP6|NRDJ_BDEBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase; AltName: Full=Ribonucleoside-diphosphate reductase nrdJ gi|39573928|emb|CAE79105.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio bacteriovorus HD100] Length = 764 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 142/582 (24%), Positives = 241/582 (41%), Gaps = 69/582 (11%) Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ S+CF+ +V D + IF + A L KY G G++++ +R G+ GKS G+ Sbjct: 166 RPQCSACFIQSVDDSIESIFDLAKTEAKLFKYGSGTGSNFSKIRS-KYEATGSGGKSSGL 224 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN--------------- 468 I FL+V + A A+ GG R+ A ++ H +V +F+D + Sbjct: 225 ISFLEVLDKGAGAIKSGGTTRRAAKMVVVDIDHPEVLDFIDWKMREEQKAHLLIAAGLSA 284 Query: 469 --TGDDRRRTHDMNTAN--WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 G+ R N N + D FMK V Q W L + Sbjct: 285 DFEGEAYRTVSGQNANNSVRVSDAFMKAVEQERPWKLKA--------------------- 323 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 R KV R+I A +W ++ + P I F D N ++HSSN Sbjct: 324 ------RLTGKVLREIPAGEVWNRITRAAWMCADPGIQFHDTINKWHTCPETDIIHSSNP 377 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHT 642 C+E S CNL SINL+ F N+ FD++ T RT + ++D + + Sbjct: 378 CSEYMFLDDS----ACNLASINLV-KFLNDTGDFDFESFIHTARTLFVAQEILVDYSSYP 432 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 ++ +++H +R +GLG S L + Y S E A +S A S E+A Sbjct: 433 TQRVAQNSHDYRPLGLGFANLGSLLMRKGVAYDSDEGRAWAGALTSLMSGVAYLTSSEMA 492 Query: 703 QERGAYSSFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 + +G ++ ++ S+ ++ +A +++ R W + + G R Sbjct: 493 RAKGPFAGYRKNSKSMLKVMKMHERALNQVAWKMLPAGIDKAVRNLWKGVLYNGEKYGYR 552 Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWD 817 N+ IAPT TI + + I+P + + K + G+ +VN + L ++ Sbjct: 553 NAQATVIAPTGTIGLLMDCDTTGIEPDFSLIKFKKLVGGGEIQIVNQSVDAALASLQYFE 612 Query: 818 EAMISDLKY---HDGSIGNIERIPDDLKKIH-ATAFE----IDPMWLIESASRRQKWIDQ 869 + + LKY ++ +G + P+DL ATA + P ++ + Q +I Sbjct: 613 DERQAILKYVEENNSVVGAPQMHPEDLPVFDTATAMPGQRVLSPESHVKMMAAVQPFISG 672 Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATS 910 A S + + + ++ + IY AW +G+K R S S Sbjct: 673 AISKTVNMPSTATEEDISRIYFLAWKLGVKAVAVYRDGSKQS 714 >gi|304315898|ref|YP_003851043.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777400|gb|ADL67959.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1143 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 104/317 (32%), Positives = 155/317 (48%), Gaps = 42/317 (13%) Query: 600 CNLGSINL--LAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNLGSINL + N ++ DYDKL T+ AV LDNVID N + + + + R Sbjct: 656 CNLGSINLKNMLKEENGKYEVDYDKLRDTVHNAVHFLDNVIDANKYPLPQIDEMTKGTRK 715 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MGF L +L+IPY S EAVE AD+ M+FI + AS+ELA++RG + F S+ Sbjct: 716 IGLGVMGFADMLLMLNIPYNSEEAVEFADKLMKFIDEESKKASMELAKKRGVFKYFDKSI 775 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + + K I +RN+ IAPT TI+ I Sbjct: 776 Y-----------------------------------KDKNIKLRNATTTTIAPTGTISII 800 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 G S I+P + ++ M V VN +R + + ++ + G++ I Sbjct: 801 AGTSSGIEPLFAIAMTRNVMDNTQLVEVNPIFKEVALKRGFYSDELMKKIA-EQGTLKGI 859 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAW 893 + IPDD+KK+ TA +IDP+W I + QK +D A S + + + + + +Y A+ Sbjct: 860 DSIPDDVKKVFVTAHDIDPVWHIRMQAAFQKHVDNAVSKTVNFRHDATVDDVREVYELAY 919 Query: 894 LMGLKTTYYLRSRSATS 910 +GLK R S S Sbjct: 920 RLGLKGVTIYRDGSRDS 936 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 42/297 (14%) Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK--------EKRAVEFYNLLSSF 349 ++L RY NG +E + F RVA ++ E +K E+ +FY+++++ Sbjct: 9 KVLERRYLAKDENGRVVETVEELFERVAK--SISEIDKKYDSNANIEELKNKFYDMMTNL 66 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 67 DFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRP 126 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ ++ Sbjct: 127 KGATVKSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFIQCKQ-- 184 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D + N + I + FMK V + L P Sbjct: 185 --DNNEITNFNISVGITEDFMKAVESGEDYDLVDPHTK---------------------- 220 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 KV K++A ++ ++ M ++ G P I F D N ++P +G + S+N C Sbjct: 221 -----KVVNKLNAREVFELIVEMAWKNGEPGIVFLDRINEKNPTPAIGEIESTNPCV 272 >gi|332300423|ref|YP_004442344.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Porphyromonas asaccharolytica DSM 20707] gi|332177486|gb|AEE13176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Porphyromonas asaccharolytica DSM 20707] Length = 857 Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 167/707 (23%), Positives = 291/707 (41%), Gaps = 113/707 (15%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326 + + FD Y A L+Y F + L ++ +Y L + I + P+ R+A Sbjct: 1 MKQKTYSFDEAYQAT-LEY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56 Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PD 378 L E E +L+ F ++ S T + + LS+CF+ + PD Sbjct: 57 ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 GI +E L K GG+G+D + +R G+ + + S G++PF++ +++ V Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G+R GA+ + H D E F+D + G + N + I D FM+ V + Sbjct: 177 AQDGRR-GALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVDD-- 229 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 KE+ Y + + E K R I A LW K++ + + Sbjct: 230 -----------------KEYVQTYPIHSK-----EPKFTRTIQARQLWDKIIYNAWRSAE 267 Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613 P + F D S P + + S+N C EI L C L +INL ++ N Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVRNP 323 Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645 FD+D + A+R++D++ID+ I+ K Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K+ R G+G+ L + + Y S EA+ A+E + + A ++SVELA+ER Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ L+D +D + R ++ +L + +K G RN + Sbjct: 444 GAF-----DLYD-----------TEREKDNPFIQRVAKAD-PKLYEEMKKFGRRNIAMLT 486 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL 815 IAPT + + + S I+P + +Y + N+ D+T ++F + + Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNF 546 Query: 816 --WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 W +A D H+ S ++ + ATA ++D + ++ R Q+W+D + S+ Sbjct: 547 LTWMKANGYDPN-HNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISV 605 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK 917 + L + S + + +Y +AW G K T Y SRS + + K Sbjct: 606 TINLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLISEEQQK 652 >gi|228990453|ref|ZP_04150418.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus pseudomycoides DSM 12442] gi|228996555|ref|ZP_04156194.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus mycoides Rock3-17] gi|229004205|ref|ZP_04162006.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus mycoides Rock1-4] gi|228757066|gb|EEM06310.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus mycoides Rock1-4] gi|228763187|gb|EEM12095.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus mycoides Rock3-17] gi|228768979|gb|EEM17577.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus pseudomycoides DSM 12442] Length = 462 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 123/489 (25%), Positives = 218/489 (44%), Gaps = 65/489 (13%) Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKGA YL +H D+ EFLD +K D++ R ++ +P F + +N + +F Sbjct: 2 QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P V + + + +I E ++ K ISA + K+ + E+G+P++ Sbjct: 62 APYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKPLDISARDMLIKIAMIQLESGYPYLM 121 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610 FK N + P + +G V SNLCTEI L +SE CNLGS+N++ Sbjct: 122 FKSNANKQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNV 181 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + + + + + V D + N T++KA H+ +GLG M L Sbjct: 182 MENKEIR-EAVHAGMEALTAVSDMTVIPNAPTVKKANDELHS---VGLGAMNLHGYLAKN 237 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-------- 721 I Y S EA E +++++I S+ +A+E+G + F S + G + Sbjct: 238 KIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGSYFEKYETTD 297 Query: 722 --PI-DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 P+ D + L E + ++ W LK+ V+ G+ NS +AIAPT +I+ + Sbjct: 298 YSPVTDKVQQLFE-----GIYIPTKEDWTSLKEEVQKHGLYNSYRLAIAPTQSISYVQNA 352 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + S+ P +V++++ R + + Y + Sbjct: 353 TSSVMP---------------------IVSQIESRTYANATTYYPMPY----------LS 381 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897 D + ++++++ LI+ + Q+ IDQ S LY++ + S ++L Y A GL Sbjct: 382 KDTFWYYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGL 441 Query: 898 KTTYYLRSR 906 K+ YY R+R Sbjct: 442 KSLYYTRTR 450 >gi|333029143|ref|ZP_08457204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides coprosuis DSM 18011] gi|332739740|gb|EGJ70222.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides coprosuis DSM 18011] Length = 855 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 160/683 (23%), Positives = 291/683 (42%), Gaps = 114/683 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAV 340 LKY F+ + L ++ ++Y + + I + P R+A LA E + + Sbjct: 14 LKY---FSGDELAARVWVNKYAMKDSYGSIYEKSPADMHWRIANELARVEKKYPNPLTSE 70 Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV--PDDLYG-IFGALQENAMLA 394 E + LL F ++ S T + + LS+CF+ V P D YG I +E L Sbjct: 71 ELFKLLDKFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVEGPGDSYGGIIKMDEEQVQLM 130 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 131 KRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDGRR-GALMLSVSI 189 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + I D FM + G Y Sbjct: 190 KHPDSEAFIDAKMTEG----KITGANVSVKIDDEFMTAAINDKG---------------Y 230 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 +++ I E ++I A +LW K++ +++ P + F D S P Sbjct: 231 IQQYPIYSET---------PTTVKEIKAKSLWEKIVHNAWKSAEPGVLFWDTIIKESVPD 281 Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + + S+N C EI L C L +INL ++ N +F++D + Sbjct: 282 CYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVENPFTDKAKFNFDLFKKHV 337 Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661 A R++D++ID+ IE K K R G+G+ Sbjct: 338 ALAQRIMDDIIDLELEKIETILSKIKSDPENEEVKRTEYNLWQKIYKKTGQGRRTGVGIT 397 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L++ Y + EA + ++E + I+ A +ASV++A+ERGA+ + F Sbjct: 398 AEGDMLAALNLRYGTEEATDFSEEVHKTIALAAYNASVDMAKERGAFEVYDTDREANNPF 457 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + ++D + L +++K G RN C+ IAPT T + + + Sbjct: 458 -------INRLKDADSA----------LYEKMKKYGRRNIACLTIAPTGTTSLMTQTTSG 500 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY------------HD 828 I+P + +Y + ++ + T V V+E D ++E ++ K+ Sbjct: 501 IEPVFLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEAKGYNPAKR 558 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 + I+++ ++ AT+ ++D + ++ R QKW+D + S+ + L ++L + Sbjct: 559 YTQEEIDKLVEESPYNKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVNEELVNK 618 Query: 888 IYRQAWLMGLK--TTYYLRSRSA 908 +Y +AW G K T Y SRS Sbjct: 619 LYVEAWKAGCKGCTVYRDGSRSG 641 >gi|329729596|gb|EGG65997.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus 21193] Length = 493 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 29/348 (8%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 ++ + + L V D+ N +K+N ++GLG+M L Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYL 473 >gi|253995423|ref|YP_003047487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera mobilis JLW8] gi|253982102|gb|ACT46960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera mobilis JLW8] Length = 721 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 159/636 (25%), Positives = 277/636 (43%), Gaps = 76/636 (11%) Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGT-RHPQLSSCFLTT 375 A ++RVA LA ET +EKRA L + + + N+G H +S T Sbjct: 49 ASYLRVARALADVETTEEKRAEWHEKFLWALRRGAIPAGRITSNAGALEHKPATSTINCT 108 Query: 376 VP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 V D + I G + E + K G+G +++ +R GA + G + G + F+ + Sbjct: 109 VSGVISDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIY 168 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + V+ G R+GA A + H DV +F+ ++ G R N + I FM+ Sbjct: 169 DKMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKRENG----RLRQFNLSCLITKEFME 224 Query: 492 RVTQNAGWTLFSPD----------EVSDLHDLYGKEFEIA--YENYERQADRGEI--KVF 537 V +A W L P V+D + +E+ I Y D G++ +V+ Sbjct: 225 AVKADAEWKLAFPVTEKESIIDNLNVNDESQVVWREWPIKGKYLTKTDGVDAGKVACRVY 284 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 + I A LW +++ ++ P D N + + ++N C E L Sbjct: 285 KTIKARRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPP----Y 340 Query: 598 AVCNLGSINLLAH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 C LGS+NL F + FD+ + + R+LDNV++IN +++ + Sbjct: 341 GACLLGSVNLTRFVKKPFTDEAYFDWKEYREVVAIFTRMLDNVVEINGLPLQQQRDEIMR 400 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA----- 707 R G+G +G S+L ++ + Y ++++ +E ++ S V+LA+E+GA Sbjct: 401 KRRHGMGYLGLGSSLTMMKMKYGEEDSIKFTEEVTRVMAEEGWSVGVQLAEEKGAAPIMD 460 Query: 708 --YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNS 761 + L + D I + ++ ++ + + SR P + L+ ++ T G+R + Sbjct: 461 EKFEITADMLAKRPEMAADGIKVGQKIAGKVLLGKYSRYMQQFP-EGLRNQIATKGVRFT 519 Query: 762 NCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRD 814 + +IAPT TI AN S I+PS+ + Y ++ + V+ F L R+ Sbjct: 520 HHSSIAPTGTISLSLAN--NASNGIEPSFAHHYARNVIREGKKSKEKVDVFSYELLAYRE 577 Query: 815 LWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 L + + + + D E++PD D I A A +D I++AS QKWID Sbjct: 578 LINP---NAMPFSDKP---EEQLPDYFLDSSTIMAKA-HVD----IQAAS--QKWID--S 622 Query: 872 SLNLYLDEPSGKKL-DF--IYRQAWLMGLKTTYYLR 904 S++ ++ P+ DF IY A+ GLK R Sbjct: 623 SISKTINVPTDYDFEDFKNIYLYAYDKGLKGCTTFR 658 >gi|332877996|ref|ZP_08445726.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683958|gb|EGJ56825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 845 Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 157/652 (24%), Positives = 266/652 (40%), Gaps = 109/652 (16%) Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSC 371 P+ R+A +A E + E +A E + LL F ++ + + G H LS+C Sbjct: 47 PEDMHWRIANEIARIENKYENPLKAEEIFGLLDHFKYIIPAGSPMTGIGNNHQIASLSNC 106 Query: 372 FLTTV---PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 F+ + D GI +E L K GG+G+D + +R G+ + + S G++PF+ Sbjct: 107 FVIGLDGQADSYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 166 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + +++ V Q G+R GA+ + H D E F+D + G + N + I D Sbjct: 167 ERYSNSTREVAQDGRR-GALMLSVSIKHPDAEAFIDAKMTEG----KVTGANVSVKIDDE 221 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM + +T P D V + ISA LW+K Sbjct: 222 FMHAAIEGQSYTQQYP------------------------IDSSSPMVAKNISAQDLWKK 257 Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604 ++ +++ P + F D S P + + S+N C EI L C L + Sbjct: 258 IVHNAWKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 313 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC------------------- 640 INL A+ N FD+D ++ A R++D++ID+ Sbjct: 314 INLYAYVVNPFTPEAYFDFDLFKKHVQLAQRLMDDIIDLELEKIEMILQKIDADPESEEV 373 Query: 641 -----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 H EK K + R G+G+ L L + Y + EA + A E + ++ A Sbjct: 374 KGTERHLWEKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTQEATDFAVEVHKTVALQAY 433 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +SV++A+ERGA+ F F I L E EL N Sbjct: 434 RSSVQMAKERGAFEIFDAEREKNNPF----INRLREADPELYENMVK------------- 476 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814 G RN C+ IAPT T + + + I+P + +Y + ++ + V+ ++E D Sbjct: 477 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDPEVHIDFIDETG--D 534 Query: 815 LWDEAMISDLKY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASR 862 ++E ++ K+ +D + D+L ATA ++D + ++ Sbjct: 535 AFEEYIVYHHKFLTWMKINGYDTEKRYTQEEIDELVARSPYYKATANDVDWLMKVKMQGA 594 Query: 863 RQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSV 911 QKW+D + S+ + L ++L + +Y +AW G K T Y SRS + Sbjct: 595 IQKWVDHSISVTVNLPNNVDEELVNQLYVEAWRSGCKGCTIYRDGSRSGVMI 646 >gi|282916073|ref|ZP_06323836.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus D139] gi|282320021|gb|EFB50368.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus D139] Length = 493 Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 29/348 (8%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 +A +F + + + +TPT N+G R +L SCFL V D L I L+K Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572 + ++ + Y+ ++ +K + R+ML ++ +T G+P++ FKD N P Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387 Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620 ++G + SNLCTEI +N E + CNLGS+N++ N + K Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 ++ + + L V D+ N +K+N ++GLG+M L Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYL 490 >gi|157310980|ref|YP_001468976.1| putivate ribonucleotide reductase [Corynebacterium phage P1201] gi|95832128|gb|ABF57528.1| putivate ribonucleotide reductase [Corynebacterium phage P1201] Length = 865 Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/344 (30%), Positives = 168/344 (48%), Gaps = 22/344 (6%) Query: 256 FCRYIEEGVKARLLHESMMDFDLV--YLANDLK------YERDFAFE-YLGLQILYDRYF 306 F +EE V + D D+V Y DLK Y F F+ Y+G Y+ Y Sbjct: 45 FFHSLEEKVDHLTEEVQLWDKDVVLRYGFEDLKRLMKQAYGHKFRFKTYMGALKFYNSYA 104 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 L N + + + RV + A+ +E + A +L+ F +TPT N+G Sbjct: 105 LKTNDGK-RYYERYEDRVVL-TAIHYSEDFEHAESLVDLIIKGIFQPATPTFLNAGLLDA 162 Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 + SCF+ V D + I +Q++ L+K GG+G ++ +R GA I G G++ GVI Sbjct: 163 GKPVSCFILDVQDTMGSIGRIVQDSLQLSKRGGGVGIGFSNLREAGAPIKGREGQASGVI 222 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ + Sbjct: 223 PVMKILEDSFSYSNQLGARQGAGAVYLNAHHPDILAFLDTKRENADEKIRIKTLSLGVIV 282 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEI-KVFRKIS 541 PD+ + ++ LFSP D++ +YGK EF + E Y+ I K F I Sbjct: 283 PDVTFRLAKESEPMALFSP---YDINKVYGKSLSEFSVT-EMYDTWLKDDRIAKTF--ID 336 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 A L++ + + FE+G+P++ F D N +P ++G + SSNLC Sbjct: 337 ARKLFQTIAEVQFESGYPYLMFDDAANRGNPAPNIGRIKSSNLC 380 Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 91/331 (27%), Positives = 142/331 (42%), Gaps = 49/331 (14%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ A D D + ++ A + L+ V + + + N RAIGL Sbjct: 566 CNLGSLNVARLSA---LDTDDFHTAVKDAYKFLNQVAVQTEIGSSPTVVRGNRESRAIGL 622 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW- 716 G M AL L + Y S EA + + M ++F ISASV+ A+E G+ + +GS W Sbjct: 623 GQMNLHGALIELGLDYNSQEARDWFEWYMMRVTFSVISASVDKAEEMGSGFKGAEGSRWG 682 Query: 717 -------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 D+ + ID I + + + W L +R + G+ N N AI PT Sbjct: 683 DIISGHRDRAMALIDRITASGNAMENSDVAWS--YEWLRLLERFRLHGIYNQNLQAIPPT 740 Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + V K G + NE Sbjct: 741 GSISYINHATASIHPVTSPVEVRKEGKLGRVYYPQYGVTNE------------------- 781 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 N+E I +A+ I P +I+ + W+DQ SL L+ D + + ++ Sbjct: 782 ----NVESID--------SAYAIGPNPIIDMYAVASPWVDQGMSLTLFFPDTATTRDINR 829 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 A GLK+ YY+R+ SA SVE + ++G Sbjct: 830 AQIYAHKKGLKSLYYIRT-SAKSVEGTEVEG 859 >gi|224536055|ref|ZP_03676594.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus DSM 14838] gi|224522328|gb|EEF91433.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus DSM 14838] Length = 845 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 161/688 (23%), Positives = 293/688 (42%), Gaps = 111/688 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + A E ++ Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM + P Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 + E V ++I+A LW+K++ +++ P + F D S P + Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N FD++ + A Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFQKHVALAQ 343 Query: 630 RVLDNVIDINCHTIEK----------AKKSNHTHRAI--------------GLGLMGFQS 665 R++D++ID+ IE+ ++ HT R + G+G+ Sbjct: 344 RIMDDIIDLELEKIERIMEKIDADPESEDVKHTERILWDKIYKKSGQGRRTGVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + F Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYDTEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E +L ++++KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLREADPQL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSI----G 832 + +Y + ++ + T V+ V+E D ++E ++ K+ H+ S Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHPKFVTWMEAQGHNPSKRYTQE 564 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891 I+ + + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y + Sbjct: 565 EIDVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624 Query: 892 AWLMGLK--TTYYLRSRSATSVEKSTLK 917 AW G K T Y SRS + + K Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISAKSDK 652 >gi|34540859|ref|NP_905338.1| ribonucleotide reductase [Porphyromonas gingivalis W83] gi|34397173|gb|AAQ66237.1| ribonucleotide reductase [Porphyromonas gingivalis W83] Length = 850 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 154/628 (24%), Positives = 264/628 (42%), Gaps = 111/628 (17%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394 E ++L F ++ S T + + LS+CF+ + D YG I +E L Sbjct: 73 ELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDADSYGAIIRIDEEQVQLM 132 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 191 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + I D FM+ V + Sbjct: 192 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVE------------------- 228 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 GK ++ Y D E K ++I A LW K++ +++ P + F D S P Sbjct: 229 GKPYKQQY-----PIDAKEPKWEKEIDARTLWGKIIHNAWKSAEPGVLFWDTIIRESVPD 283 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + S+N C EI L C L +INL ++ N FD++ + + Sbjct: 284 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVKNPFTSEASFDFELFRNHV 339 Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661 A R++D++ID+ IE K ++ R G+G+ Sbjct: 340 VLAQRIMDDIIDLEAEKIEQILSKIASDPESEEVKTSERNLWHKIRRKTLAGRRTGVGIT 399 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L + Y S EA + A+E + ++ A S+SV +A+ERGA+ F + F Sbjct: 400 AEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFELFDAKREENNPF 459 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 +A +R+ PW L + +K G RN C+ IAPT + + + S Sbjct: 460 -------IARIREAD--------PW--LYEEMKQYGRRNIACLTIAPTGSTSLMTQTSSG 502 Query: 782 IDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--W--DEAMISDLKYH 827 I+P + +Y + N+ D+ V +SF + + W D KY Sbjct: 503 IEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWMRTNGYDPDRKYT 562 Query: 828 DGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885 + I + + R P ATA ++D + ++ R Q+W+D + S+ + L ++L Sbjct: 563 NEEIDDLVARSP----YYKATANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDVTEELV 618 Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSV 911 + +Y +AW G K T Y SRS + Sbjct: 619 NTLYVEAWKSGCKGCTVYRDGSRSGVLI 646 >gi|188995090|ref|YP_001929342.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277] gi|188594770|dbj|BAG33745.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277] Length = 850 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 154/628 (24%), Positives = 264/628 (42%), Gaps = 111/628 (17%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394 E ++L F ++ S T + + LS+CF+ + D YG I +E L Sbjct: 73 ELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDADSYGAIIRIDEEQVQLM 132 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 191 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + I D FM+ V + Sbjct: 192 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVE------------------- 228 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 GK ++ Y D E K ++I A LW K++ +++ P + F D S P Sbjct: 229 GKPYKQQY-----PIDAKEPKWEKEIDARTLWGKIIHNAWKSAEPGVLFWDTIIRESVPD 283 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + S+N C EI L C L +INL ++ N FD++ + + Sbjct: 284 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVKNPFTSEASFDFELFRNHV 339 Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661 A R++D++ID+ IE K ++ R G+G+ Sbjct: 340 VLAQRIMDDIIDLEAEKIEQILSKIDSDPESEEVKTSERNLWHKIRRKTLAGRRTGVGIT 399 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L + Y S EA + A+E + ++ A S+SV +A+ERGA+ F + F Sbjct: 400 AEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFELFDAKREENNPF 459 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 +A +R+ PW L + +K G RN C+ IAPT + + + S Sbjct: 460 -------IARIREAD--------PW--LYEEMKQYGRRNIACLTIAPTGSTSLMTQTSSG 502 Query: 782 IDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--W--DEAMISDLKYH 827 I+P + +Y + N+ D+ V +SF + + W D KY Sbjct: 503 IEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWMRTNGYDPDRKYT 562 Query: 828 DGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885 + I + + R P ATA ++D + ++ R Q+W+D + S+ + L ++L Sbjct: 563 NEEIDDLVARSP----YYKATANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDVTEELV 618 Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSV 911 + +Y +AW G K T Y SRS + Sbjct: 619 NTLYVEAWKSGCKGCTVYRDGSRSGVLI 646 >gi|319767468|ref|YP_004132969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. Y412MC52] gi|317112334|gb|ADU94826.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. Y412MC52] Length = 596 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 125/452 (27%), Positives = 202/452 (44%), Gaps = 61/452 (13%) Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541 FM+ V ++ + L PD + +E I E + D E ++V+RKI Sbjct: 117 FMEAVEKDEEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 172 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + + P I F D N + + G V ++N C E L S VC Sbjct: 173 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 228 Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL +INL A+ + + DY+KL T+ VR+ DNVID + +E+ KK R IG Sbjct: 229 NLAAINL-ANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 287 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L Y S E ++ DE I+ A AS+ELA+E+G++ G + Sbjct: 288 LGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGSFPFLVGETEE 347 Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + ++R+ + R+P D +++ + G+RNS+ + +APT + + Sbjct: 348 E----------TRKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 396 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVS ++P + Y +S G F V + +V E L H E Sbjct: 397 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 437 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893 P+ L TA ++ P + Q+W+D SL+ ++ P G +++ +Y + W Sbjct: 438 DPNHLPPWFVTAMDLPPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 495 Query: 894 LMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923 G K T Y SR A + TLK + ++ Sbjct: 496 RCGAKGGTVYVDGSRDAQVL---TLKAEENRI 524 >gi|205374047|ref|ZP_03226847.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus coahuilensis m4-4] Length = 849 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 130/458 (28%), Positives = 206/458 (44%), Gaps = 61/458 (13%) Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQADRGE----- 533 N + + D FMK V ++ + L PD S Y +E Y EN+ + D E Sbjct: 370 NISVCLTDDFMKAVEEDRDYELRFPDVES-----YNEEQMKYYNENWHQVGDVREWEKQG 424 Query: 534 --IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITL 590 ++ +R I A LW + + P I F D N ++ G V ++N C E L Sbjct: 425 YAVRTYRTIRAKELWNLINICATYSAEPGIFFIDNANDKTNATAYGQKVVATNPCGEQPL 484 Query: 591 NSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 S VCNL +INL A FAN + D++KL T+ VR+ DNVID + +E K Sbjct: 485 APYS----VCNLAAINL-AEFANKESKTVDFEKLKQTVAIGVRMQDNVIDATPYFLEDNK 539 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K R +GLG+MG L Y S E ++ D+ E I+ A S++LA+E+G+ Sbjct: 540 KQALGERRVGLGVMGLADLLIYCEKEYGSEEGNQLVDQVFEVIATTAYRESIDLAKEKGS 599 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + +GS ++ L + E + +P D +++ + T G+RNS+ + +A Sbjct: 600 FPFLEGSTEEE-------TNRLRQAFTETGYMKG--MPED-IREDILTYGIRNSHLLTVA 649 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT + + GVS ++P + Y +S G F V + +V E L +H Sbjct: 650 PTGSTGTMVGVSTGLEPYFSFTYYRSGRLGKFIEVKADIVQEY-------------LDHH 696 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KK 884 + P L ATA + P + Q+WID S++ ++ P G ++ Sbjct: 697 P------DADPHALPHWFATAMSLKPEAHADVQCVIQRWID--SSISKTVNAPKGYTVEQ 748 Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVD 920 ++ +Y + + G K T Y SR A + TLK D Sbjct: 749 VEKVYERLYKGGAKGGTVYVDGSRDAQVL---TLKAED 783 Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 5/146 (3%) Query: 323 RVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSG--TRHPQLSSCFLTTVP 377 R A GLA E +E R +FYN L F+ + L+ +G T + + V Sbjct: 137 RNATGLASAEKTEELRQEWFQKFYNELVHLRFVPAGRVLYGAGAGTDVTYFNCYVMPFVQ 196 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D GI ++ + GG+G + + +R G NGKS G + +L Sbjct: 197 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSSGSVSWLDDIAKLTHL 256 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463 V QGG R+GA L WH D+ EF+ Sbjct: 257 VEQGGSRRGAQMIMLSDWHPDIVEFI 282 >gi|260888488|ref|ZP_05899751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Selenomonas sputigena ATCC 35185] gi|330838203|ref|YP_004412783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Selenomonas sputigena ATCC 35185] gi|260861685|gb|EEX76185.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Selenomonas sputigena ATCC 35185] gi|329745967|gb|AEB99323.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Selenomonas sputigena ATCC 35185] Length = 749 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 138/525 (26%), Positives = 229/525 (43%), Gaps = 79/525 (15%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 +G IL +Y+ H + P F RVA G+ E ++ RA LS + Sbjct: 9 IGRSILQAKYY-HAGETE---PHEFIERVA-GIFSPEVREKMRAYLEDGALSP-----AG 58 Query: 356 PTLFNSGTR---HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 TL+ +G + LS+C++ P DD+ IF Q+ A + Y GG+G + + +R Sbjct: 59 RTLYAAGAKGKFKSSLSNCYIMPSPTDDIESIFTVNQQIAKIFSYGGGIGVNISGLRPKD 118 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + ++ S G + FLK+ N T ++Q G R+GA+ L++ H D+ EFL +++ Sbjct: 119 SRVNNVARSSTGAVSFLKIFNTTGEVISQNG-RRGAMLVALDSEHPDIYEFLHMKQ---- 173 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + + MN + D FM+ V +A E+E+ ++ Sbjct: 174 ENEKLASMNLSILFSDAFMQAVIDDA-------------------EYELTFD----VEAT 210 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEIT 589 GE K+ R I A + + ++ G P FKD N + + +N C E Sbjct: 211 GE-KIRRTIRAAEFFDEYCQTQWDWGDPGALFKDRLNDYTLLSGYDEYKIEVTNPCGEFG 269 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLA-----STIRTAVRVLDNVIDINCHT-- 642 N+ + CNL S+NL + + D +A + I+TAVR LD V+D T Sbjct: 270 GNAYNS----CNLMSLNLYSFIEDKFGDAPHIAEEEFRAAIQTAVRALDEVLDYGFDTQP 325 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +E+ ++ R++GLGL G A + + Y S E+ + + + A S LA Sbjct: 326 LEENRQCIRDWRSVGLGLFGVADAFVAMKLAYGSRESCDFIQGVLRTMFTEAARTSAALA 385 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +E+GA+ + W++ + L P E+ +K G+RN Sbjct: 386 KEKGAFGKYD---WEK------------TKKSPLIQRLAEEAP--EVYAEIKEYGLRNGT 428 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-----SGDFTV 801 ++IAPT TI+ + GV S +P YQ Y ++ SG F V Sbjct: 429 LLSIAPTGTISLLMGVFSGGCEPLYQISYERTTHKMEEGSGSFRV 473 >gi|56420954|ref|YP_148272.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus kaustophilus HTA426] gi|56380796|dbj|BAD76704.1| ribonucleoside-diphosphate reductase (major subunit) [Geobacillus kaustophilus HTA426] Length = 857 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 122/437 (27%), Positives = 195/437 (44%), Gaps = 58/437 (13%) Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541 FM+ V ++ + L PD + +E I E + D E ++V+RKI Sbjct: 378 FMEAVEKDEEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 433 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + + P I F D N + + G V ++N C E L S VC Sbjct: 434 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 489 Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL +INL A+ + + DY+KL T+ VR+ DNVID + +E+ KK R IG Sbjct: 490 NLAAINL-ANMVDKERKVIDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 548 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L Y S E ++ DE I+ A AS+ELA+E+G++ G + Sbjct: 549 LGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGSFPFLVGETEE 608 Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + ++R+ + R+P D +++ + G+RNS+ + +APT + + Sbjct: 609 E----------TRKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 657 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVS ++P + Y +S G F V + +V E L H E Sbjct: 658 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 698 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893 P+ L TA ++ P + Q+W+D SL+ ++ P G +++ +Y + W Sbjct: 699 DPNHLPPWFVTAMDLPPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 756 Query: 894 LMGLK--TTYYLRSRSA 908 G K T Y SR A Sbjct: 757 RCGAKGGTVYVDGSRDA 773 Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%) Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VP 377 R A GLA E +EKR +FY L+S +F+ + L+ +G+ + +C++ V Sbjct: 136 RNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKEVTYFNCYVMPFVK 195 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D GI ++ + GG+G + + +R G NGKS G + +L Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHL 255 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463 V QGG R+GA L WH D+ EF+ Sbjct: 256 VEQGGSRRGAQMIMLADWHPDIIEFI 281 >gi|297529413|ref|YP_003670688.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. C56-T3] gi|297252665|gb|ADI26111.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. C56-T3] Length = 857 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 202/459 (44%), Gaps = 75/459 (16%) Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541 FM+ V ++ + L PD + +E I E + D E ++V+RKI Sbjct: 378 FMEAVEKDEEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 433 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + + P I F D N + + G V ++N C E L S VC Sbjct: 434 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 489 Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL +INL A+ + + DY+KL T+ VR+ DNVID + +E+ KK R IG Sbjct: 490 NLAAINL-ANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 548 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L Y S E ++ DE I+ A AS+ELA+E+G+ Sbjct: 549 LGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGS---------- 598 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTS--------RLPWDELKKRVKTIGMRNSNCMAIAPT 769 FP L+ E +E R + R+P D +++ + G+RNS+ + +APT Sbjct: 599 ---FPF----LVGETEEETRKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPT 650 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + GVS ++P + Y +S G F V + +V E L H Sbjct: 651 GSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP- 696 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLD 886 E P+ L TA ++ P + Q+W+D SL+ ++ P G +++ Sbjct: 697 -----EADPNHLPPWFVTAMDLPPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQ 749 Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923 +Y + W G K T Y SR A + TLK + ++ Sbjct: 750 KVYERLWRCGAKGGTVYVDGSRDAQVL---TLKAEENRI 785 Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%) Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VP 377 R A GLA E +EKR +FY L+S +F+ + L+ +G+ + +C++ V Sbjct: 136 RNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKEVTYFNCYVMPFVK 195 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D GI ++ + GG+G + + +R G NGKS G + +L Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHL 255 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463 V QGG R+GA L WH D+ EF+ Sbjct: 256 VEQGGSRRGAQMIMLADWHPDIIEFI 281 >gi|295399141|ref|ZP_06809123.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus thermoglucosidasius C56-YS93] gi|294978607|gb|EFG54203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus thermoglucosidasius C56-YS93] Length = 591 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 122/437 (27%), Positives = 197/437 (45%), Gaps = 58/437 (13%) Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541 FM+ V ++ + L PD + +E I E + D E ++V+RKI Sbjct: 112 FMEAVEKDEEYELRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 167 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + + P I F D N + + G V ++N C E L S VC Sbjct: 168 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 223 Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL +INL A+ + + DY+KL T+ VR+ DNVID + +E+ KK R IG Sbjct: 224 NLAAINL-ANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 282 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L Y S E ++ DE + I+ A AS+ELA+E+G++ G + Sbjct: 283 LGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFPFLVGKTEE 342 Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + ++R+ + R+P D +++ + G+RNS+ + +APT + + Sbjct: 343 E----------TQKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 391 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVS ++P + Y +S G F V + +V E L H E Sbjct: 392 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 432 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893 P++L TA ++ P + Q+W+D SL+ ++ P G +++ +Y + W Sbjct: 433 DPNNLPHWFVTAMDLSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 490 Query: 894 LMGLK--TTYYLRSRSA 908 G K T Y SR A Sbjct: 491 RGGAKGGTVYVDGSRDA 507 >gi|327198491|ref|YP_004327079.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa104] gi|311875187|emb|CBX44447.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa104] Length = 744 Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 189/801 (23%), Positives = 327/801 (40%), Gaps = 108/801 (13%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DGT+ F+ RL E A + D + V + K +DG + SDL+ A+I I Sbjct: 9 DGTVQPFDPSRLNRWAEWAANYGVDWAEIAV--DAVKRCHDGCTTSDLQWAMI---EACI 63 Query: 211 EKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +++ +A + R L+ + +E K P ++ K R L Sbjct: 64 DRQTQAHANMAGRLLIGNVYKEAFGGFRKIPTLTDFYD-----------------KMRTL 106 Query: 270 H--ESM--MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323 + E M D +L YL + + +D + Y ++ D+Y + + E PQ FM Sbjct: 107 NLWEDMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166 Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ + ++ K++R ++ Y LS TP L ++ +SC + D Sbjct: 167 MALAV-MQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTA 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A + G+G R G + QG P+ N TAV N+ Sbjct: 226 ESIGIAEHIAYTMTCKQAGIG-ILLQTRSKGDGVRNKTIVHQGKTPYFACIN-TAVKANK 283 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 R G+ ++++ L L +++ M+ I + F++RV ++ W Sbjct: 284 QQTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWM 343 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L S + +LH +E+ Y+R IK + +SA L + L +ETG + Sbjct: 344 LVSFKDAPELHKRMYGSYELFEVEYDRVMRNPGIKK-KMVSARKLSKVFLKNRYETGRVY 402 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------EETAVCNLGSI 605 F D N +P + + +SNLC EI L + + E A+C L SI Sbjct: 403 PFFTDNMNTHTPFEDT--IWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSI 460 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 +A + +Y+++A + ++DNV+DI + E KKS R++G+G+ Sbjct: 461 --VAGRVKPE-EYEEVAYY---TLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAH 514 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L Y+SP+ + E S+ AS+ LA+ERG + S + G P++ Sbjct: 515 YLASNFTNYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLED 574 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDP 784 EV + ++ T + W +L K +K G+R+S A P + + + + P Sbjct: 575 YS--QEVDN--IVDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYP 630 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 V ELK K GS+ + + + + Sbjct: 631 ----------------------VRELKMFK----------KSPQGSVFFLAPDSEVIGDV 658 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL-------DFIYRQAWLMG 896 + +A+++ +IE + QK+ QA S + Y+D +G K+ IY A +G Sbjct: 659 YQSAWDVPEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIY--AHRLG 716 Query: 897 LKTTYYLRSRSATSVEKSTLK 917 +KT YY+ SR V +S+LK Sbjct: 717 MKTQYYMNSR--VGVGESSLK 735 >gi|312110256|ref|YP_003988572.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. Y4.1MC1] gi|311215357|gb|ADP73961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacillus sp. Y4.1MC1] Length = 591 Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/437 (27%), Positives = 197/437 (45%), Gaps = 58/437 (13%) Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541 FM+ V ++ + L PD + +E I E + D E ++V+RKI Sbjct: 112 FMEAVEKDEEYELRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 167 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + + P I F D N + + G V ++N C E L S VC Sbjct: 168 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 223 Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL +INL A+ + + DY+KL T+ VR+ DNVID + +E+ KK R IG Sbjct: 224 NLAAINL-ANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 282 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L Y S E ++ DE + I+ A AS+ELA+E+G++ G + Sbjct: 283 LGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFPFLVGKTEE 342 Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + ++R+ + R+P D +++ + G+RNS+ + +APT + + Sbjct: 343 E----------TQKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 391 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVS ++P + Y +S G F V + +V E L H E Sbjct: 392 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 432 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893 P++L TA ++ P + Q+W+D SL+ ++ P G +++ +Y + W Sbjct: 433 DPNNLPHWFVTAMDLSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 490 Query: 894 LMGLK--TTYYLRSRSA 908 G K T Y SR A Sbjct: 491 RGGAKGGTVYVDGSRDA 507 >gi|298383753|ref|ZP_06993314.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 1_1_14] gi|298263357|gb|EFI06220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 1_1_14] Length = 845 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 164/685 (23%), Positives = 287/685 (41%), Gaps = 111/685 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + A E Y+ Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTAKELYD 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG I +E L K G Sbjct: 77 LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ + P E ++ Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKPYIQQYPIESANP-------- 243 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 ++I A LW+K++ +++ P + F D S P + Sbjct: 244 ----------------TTTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N FD++ + A Sbjct: 288 LGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFKKHVALAQ 343 Query: 630 RVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQ 664 R++D++ID+ IE+ KKS R G+G+ Sbjct: 344 RIMDDIIDLELEKIERIMEKIDQDPEGEEVKHAERNLWNKIYKKSGQGRRT-GVGITAEG 402 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + F Sbjct: 403 DMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYSNEREQNNPF--- 459 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 I LAE EL + E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 -IQRLAEADPEL---------YAEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505 Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHDGSIGNI 834 + +Y + ++ + T V+ V+E D ++E ++ K Y + Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKRYSQ 563 Query: 835 ERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890 E I + + K AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 564 EEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYV 623 Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915 +AW G K R S + V ST Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLIST 648 >gi|62327200|ref|YP_223938.1| ribonucleotide reductase [Phage phiJL001] gi|50059518|gb|AAT69490.1| ribonucleotide reductase [Phage phiJL001] Length = 602 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/485 (25%), Positives = 217/485 (44%), Gaps = 79/485 (16%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLT-TVPDDLYGIFGA 386 ALK+ E+ + E +L FM + G T++ +C+++ T+ D G+ Sbjct: 57 ALKDGEEHYK--ELREILLDMRFMPAGRVQAAMGSTKNVTAYNCYVSGTIEDSFIDGHGS 114 Query: 387 LQENAMLA----KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 + E A A + GG+G D++ +R GA I +S G + F+++ + V G Sbjct: 115 IMERAKQAAATMRMGGGIGYDFSTLRPNGALIKKLQSRSSGPLSFMQIYDSVCKCVASSG 174 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA L H D+EEF+ + N + NT+ I D FM+ V Sbjct: 175 HRRGAQMGVLRVDHPDIEEFIRAKHNEDN----LTGFNTSIAITDRFMECV--------- 221 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + G+ F + + + +R I+A LW ++ ++ P Sbjct: 222 ----------ISGEPFPLTFGG----------ETYRSINAENLWEMIMRSTWDWAEPGTL 261 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----------- 611 F D N + ++ + ++N C E L C LGS NL+ + Sbjct: 262 FIDQINRMNNLKYCETIAATNPCGEQPL----PPYGACLLGSFNLVKYVKPFTGRVFVVG 317 Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 A+++ FD+D A+ + VR +DNV+D + + + +K + R +GLG+ +A Sbjct: 318 ADSRWTFDWDLFATDVYAVVRAMDNVVDRAIYPLFEQEKEAKSKRRMGLGVTALANAAEA 377 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +PY S E ++ + +E ++ ++ ASVELAQE+GA+ L+D+ + + + Sbjct: 378 LGMPYGSIEFLKFEGQVLETLACNSYQASVELAQEKGAF-----PLYDERYLDSEYVRQV 432 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788 LP +EL++ + G+RNS+ +IAPT TI+ VS I+P + Sbjct: 433 --------------LP-EELQEDIGRYGIRNSHLTSIAPTGTISLTADNVSSGIEPVFSY 477 Query: 789 LYVKS 793 Y ++ Sbjct: 478 GYDRT 482 >gi|298244257|ref|ZP_06968063.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ktedonobacter racemifer DSM 44963] gi|297551738|gb|EFH85603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ktedonobacter racemifer DSM 44963] Length = 1225 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/471 (24%), Positives = 201/471 (42%), Gaps = 85/471 (18%) Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA+ L+ H D+EEF+ ++K G N + + D FM+ V +A W L Sbjct: 617 RRGALMLMLDDNHPDIEEFITVKKKAG----MIEHANLSVCVSDAFMQAVKDDADWNLVW 672 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 +GE+K + + A LW + T +E+ P + F Sbjct: 673 ---------------------------QGEVK--KTLKARHLWDLICTSAWESAEPGVVF 703 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623 D N S + + N C E L + VCNLG++N+ A ++ D+ +LA Sbjct: 704 MDRYNKESNTWYYETIRCVNPCGEQGLGPWN----VCNLGALNVAAFVSDGAMDWQRLAE 759 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + ++R LDNVID + ++ +++ R GLG MG AL + I Y S ++ + Sbjct: 760 ISKVSMRFLDNVIDATDYFFDENREAQLGTRRTGLGTMGLADALIKMKIAYGSEASIPVI 819 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 + I A AS E+A E+G + F+ + QG F R Sbjct: 820 ERIYSTIRDSAYEASTEIAAEKGPFPRFERDKYLQGKF-------------------IKR 860 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 LP L++++K G RN+ + APT T + + GVS I+P + ++ + +G+ + + Sbjct: 861 LP-KSLQEKIKKHGTRNAVLLTQAPTGTTSLLSGVSSGIEPVFDFAMIRRDRTGEHILYH 919 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L W +A + H + + + P++ ++ AT Sbjct: 920 PLL-------QAWRDAHPNASTPHY-FVSSKDLSPEEHIRVQATV--------------- 956 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRSATSV 911 Q++ D S++ ++ P+ +D + YR A+ MG K Y R S +V Sbjct: 957 QRYTD--ASISKTVNAPNNHTVDQVETLYRLAYEMGCKGVTYYRDGSRDAV 1005 Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAV---EFYNLLS 347 E + ++ DRY L G +E P+ + RVA G+A E +EK+A FY+ LS Sbjct: 29 LEGIRQKVFMDRYSLKDATGQPLEFYPEDMWKRVARGIAAVEQGEEKQAFWEERFYDALS 88 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405 +F F+ L +GT H +CF+ P+D GI L+ + GG+G + + Sbjct: 89 NFQFVPGGRILAGAGTGHQVTFYNCFVVPSPEDSRQGILENLKVMTEIMARGGGVGINLS 148 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVAN-DTAVAVNQGG 442 +R G++I NG + G + ++ + T + QGG Sbjct: 149 TLRPRGSYIKTVNGTASGPCSWAQLYSVATGDVIQQGG 186 >gi|326802953|ref|YP_004320771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aerococcus urinae ACS-120-V-Col10a] gi|326650728|gb|AEA00911.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aerococcus urinae ACS-120-V-Col10a] Length = 860 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/439 (27%), Positives = 197/439 (44%), Gaps = 62/439 (14%) Query: 489 FMKRVTQNAGWTL-FSPDEVSDLHDL--YGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 FM+ V + W+L F E D ++ Y +++ + E +A EI +R + A L Sbjct: 375 FMEAVKEGKDWSLRFPAVEKYDQEEMAAYDSQWQEIGDVREWEAMGHEITTYRTLPAQEL 434 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGS 604 W+ + P I F D N + G V ++N C E L S VCNLG+ Sbjct: 435 WQLINICATYAAEPGIFFIDRANEDTNAVAYGQKVVATNPCGEQPLAPYS----VCNLGA 490 Query: 605 INL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 INL +A N + D KL T+ TA+R+ DNVID + +E KK R IGLG+MG Sbjct: 491 INLAQMADKENKRLDKKKLQKTVATAIRMQDNVIDATPYFLEANKKQALGERRIGLGVMG 550 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L Y S E ++ DE E I+ A S+ELA+ERG+ FP Sbjct: 551 LADLLIYCEKRYGSKEGNQLVDEVFETIAVTAYQTSIELAKERGS-------------FP 597 Query: 723 IDSIGLLAEVRDELAMNR--------TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 L+ E +E R R+P + +++ V G+RNS+ + +APT + Sbjct: 598 F----LIGETDEETQALRERFVQSGFMQRMP-ESIRQDVLKYGIRNSHLLTVAPTGSTGT 652 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + VS ++P + Y ++ G F VN+ +V E L H + ++ Sbjct: 653 MMNVSTGLEPYFAFKYYRTGRLGKFIEVNADIVQEY-------------LDQHPEA--DV 697 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891 + +PD +A ++ P ++ + Q+W+D S++ ++ P G ++ +Y + Sbjct: 698 DNLPD----FFVSAMDLSPREHVDVQTTIQRWVD--SSISKTVNAPKGYAVNQVAEVYEK 751 Query: 892 AWLMGLK--TTYYLRSRSA 908 + G K T Y SR + Sbjct: 752 LYEGGAKGGTVYVDGSRDS 770 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 323 RVAMGLA-LKETEKEKRAVE--FYNLLSSFHFMCSTPTLFN--SGTRHPQLSSCFLTTVP 377 R A GLA + + E ++ +E FY S +F+ + L+ SGT + + VP Sbjct: 134 RNAHGLAAIDKNEDRRQEIEAAFYQEESKGNFVPAGRVLYGAGSGTDVTYFNCYVMPYVP 193 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D GI +E + GG+G + + +R + + G NGKS G + +L Sbjct: 194 DSRGGIADHRKEVMEIMSRGGGVGTNGSTLRPRHSLVRGVNGKSSGAVSWLDDIAKLTHL 253 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463 V QGG R+GA L WH D+ EF+ Sbjct: 254 VEQGGSRRGAQMIMLADWHPDILEFI 279 >gi|212691080|ref|ZP_03299208.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855] gi|212666312|gb|EEB26884.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855] Length = 848 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 166/702 (23%), Positives = 291/702 (41%), Gaps = 117/702 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A + Y LL Sbjct: 19 FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL----QENAMLAKYSGG 399 F ++ S T + + LS+CF+ + D +GA+ +E L K GG Sbjct: 79 DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGI-DGAADSYGAIIRIDEEQVQLMKRRGG 137 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 138 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDS 196 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 E F+D + G + N + + D FM+ + P V ++ KE Sbjct: 197 EAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYP--VDSDQPVFTKE-- 248 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578 I A ALW+K++ +++ P + F D S P + + Sbjct: 249 --------------------IDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288 Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630 + S+N C EI L C L +INL ++ N FD+D + A R Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQR 344 Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665 ++D++ID+ IEK KKS R G+G+ Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + + Y + +A E +++ + I+ A +SV +A+ERGA++ + F Sbjct: 404 MLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E L ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLKEADPNL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833 + +Y K N + T V+ V+E D ++E +I K+ + N Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIIFHHKFVEWMTVNGYDPTKRYT 562 Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 I+ + + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 563 QEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +AW G K R S + V ST K K +P P Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664 >gi|117620070|ref|YP_855408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561477|gb|ABK38425.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 715 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 154/627 (24%), Positives = 262/627 (41%), Gaps = 62/627 (9%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT-TVPD 378 RVA+ LA +E++ + F L + T H +S C ++ T+ D Sbjct: 51 RVALALAGQESQPDVWYEPFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIED 110 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + I G + E + K G+G D++ +R GA + G + G + F+ + + V Sbjct: 111 SMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTV 170 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 + G R+GA ++ H DV EF+ ++ G R N + I + F+K V ++A Sbjct: 171 SSAGGRRGAQMGTMDIRHPDVVEFIQAKREDG----RLRQFNLSLLITEEFVKAVKEDAP 226 Query: 499 WTLFSPDEVSDLH------DLYGKEFEIAYENYERQA--DRGEI--KVFRKISAVALWRK 548 W L P ++ D + F + N E + G++ KV++ + A LW Sbjct: 227 WQLIFPYTAREVEQDGITLDDPTQVFWADWPNREGVVFNELGQVACKVYKTLPARKLWNV 286 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 ++T ++ P D N + + ++N C E L C LGS+NL Sbjct: 287 IMTSTYDYAEPGFILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSVNLT 342 Query: 609 AH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 FA FD+ + R+LDNV++IN + + ++ + R G+G +G Sbjct: 343 RFVRDPFAEQAAFDWSAFRKVVAIFTRMLDNVVEINQLPLARQREEIISKRRHGMGFLGL 402 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF-- 721 SAL +L I Y S AV ++ + ++ S+ LA+E+G + G Sbjct: 403 GSALTMLRIKYGSAAAVAFTEQVSQELAMTGWRESLALAKEKGPAPIMEQEFEVTGKLLR 462 Query: 722 -----PIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTA 770 D I L +V+ ++ R SR L + +G R ++ +IAPT Sbjct: 463 LRPEMAADGIKLGDKVKGKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAPTG 522 Query: 771 TI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISD 823 TI AN S I+PS+ + Y ++ + V+ + L R+L + A Sbjct: 523 TISLSLAN--NASNGIEPSFAHHYSRNVIKPGKKSKESVDVYSYELLAYRELVNPAA--- 577 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPS 881 + Y + R+PD TA +I P ++ + Q+WID +++ N+ D P Sbjct: 578 MPYAE---DEATRLPD----YFITADDISPAQHVDIQAAAQRWIDSSISKTANVPTDFPF 630 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + D IY A GLK R A Sbjct: 631 EQFKD-IYLYASDSGLKGCTTFRFNPA 656 >gi|198434254|ref|XP_002126546.1| PREDICTED: similar to Ribonucleotide reductase M1 [Ciona intestinalis] Length = 263 Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 117/180 (65%), Gaps = 6/180 (3%) Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W++LK+R+ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN Sbjct: 50 WNKLKQRIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNQH 109 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L+ +L + +LW+E + + ++GSI NI IPDDLK+++ T +EI +++ A+ R Sbjct: 110 LLKDLTEMNLWNEDVKLQMIANNGSIQNIPNIPDDLKQLYRTVWEISQKNIVKMAADRAA 169 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGV 919 +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR++ A +V+K+ LK V Sbjct: 170 FIDQSQSLNIHIAEPNYAKLTSMHFFGWKSGLKTGMYYLRTKPAAQAIQFTVDKNKLKDV 229 >gi|189463959|ref|ZP_03012744.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM 17393] gi|189438532|gb|EDV07517.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM 17393] Length = 845 Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 160/688 (23%), Positives = 293/688 (42%), Gaps = 111/688 (16%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + A E ++ Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 LL F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LLDHFRYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM + P Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 + E V ++I+A LW+K++ +++ P + F D S P + Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N F+++ + A Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFNFELFQKHVALAQ 343 Query: 630 RVLDNVIDINCHTIEK----------AKKSNHTHRAI--------------GLGLMGFQS 665 R++D++ID+ IE+ ++ HT R + G+G+ Sbjct: 344 RIMDDIIDLELEKIERIIEKIDADPESEDVRHTERVLWDKIYKKSGQGRRTGVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + F Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYDTEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E +L ++++KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLREADPQL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSI----G 832 + +Y + ++ + T V+ V+E D ++E ++ K+ H+ S Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHPKFVTWMEAQGHNPSKRYTQE 564 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891 I+ + + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y + Sbjct: 565 EIDVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624 Query: 892 AWLMGLK--TTYYLRSRSATSVEKSTLK 917 AW G K T Y SRS + + K Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISAKSDK 652 >gi|288802022|ref|ZP_06407463.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella melaninogenica D18] gi|288335457|gb|EFC73891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella melaninogenica D18] Length = 866 Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 174/724 (24%), Positives = 309/724 (42%), Gaps = 125/724 (17%) Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333 FD + A+ L Y F + L ++ ++Y + + I + P+ R+A +A E Sbjct: 9 FDEAFQAS-LAY---FGGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIANEIARIEN 64 Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385 + + A E ++LL F ++ S T + + LS+CF+ + D YG I Sbjct: 65 KYKNPLTAQEVFDLLDHFRYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNADSYGAIMR 124 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +E L K GG+G+D T +R G+ ++ + S G++PF++ +++ V Q G+R Sbjct: 125 IDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR- 183 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ + H D E F+D + G + N + I D FM+ V ++ + P Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAVVEDKTYVQQFPT 239 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 S E V ++ISA ALW K++ +++ P + F D Sbjct: 240 NSS------------------------EPSVTKEISAKALWEKIVHNAWKSAEPGVLFWD 275 Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616 S P + + S+N C EI L C L S+NL ++ + +F Sbjct: 276 TIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVIDPFTDHARF 331 Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652 D + + A R++D++ID+ H EK KK + Sbjct: 332 DMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKKKSCQ 391 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R G+G+ + + + Y + EA + + + ++ +A +SV +AQERGA+ + Sbjct: 392 GRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAFEIYD 451 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 ++ F I L E +L ++++KK G RN C+ IAPT T Sbjct: 452 AKREEKNPF----ILRLKEADGQL---------YEDMKK----YGRRNIACLTIAPTGTT 494 Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + + + I+P + +Y + ++ + T V+ V+E+ D ++E ++ YH + Sbjct: 495 SLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIV----YHRKFL 548 Query: 832 GNIERIPDDLKKIH----------------ATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +E D KK + ATA ++D + + QKW+D + S+ + Sbjct: 549 TWMEVNGIDTKKKYSQEEIDELVKRSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTV 608 Query: 876 YLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLKGVDGKLNAVPVTD 930 L ++L + +Y +AW G K T Y SRS SV K + ++ V D Sbjct: 609 NLPNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKD 668 Query: 931 PNSS 934 NS+ Sbjct: 669 LNSA 672 >gi|218264324|ref|ZP_03478181.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii DSM 18315] gi|218222092|gb|EEC94742.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii DSM 18315] Length = 856 Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 149/628 (23%), Positives = 262/628 (41%), Gaps = 105/628 (16%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394 E +NL F ++ S T + + LS+CF+ + D YG I +E L Sbjct: 82 ELFNLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDADSYGAIIRIDEEQVQLM 141 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 142 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 200 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + I D FM+ V +P Y Sbjct: 201 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVVNG------TP---------Y 241 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 +++ I D E ++I+A LW+K++ +++ P + F D S P Sbjct: 242 KQQYPI---------DSSEPTNVKEINAAELWKKIIHNAWKSAEPGVLFWDTILKESVPD 292 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + S+N C EI L C L +INL ++ N FD+D + Sbjct: 293 SYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKEAYFDFDLFRKHV 348 Query: 626 RTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLM 661 A R++D++ID+ H EK +K R G+G+ Sbjct: 349 ILAQRIMDDIIDLESEKIEKILEKIDTDPESLEVKQSERHLWEKIQKKTLQGRRTGVGIT 408 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y + EA A++ + ++ A +SVE+A+ERGA+ + ++ F Sbjct: 409 AEGDMIAALGLRYGTEEATVFAEKVQKMLALAAYRSSVEMAKERGAFDIYDAKREEKNPF 468 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 I L E EL +D++ K G RN C+ IAPT T + + + Sbjct: 469 ----INRLREADPEL---------YDDMVK----YGRRNIACLTIAPTGTTSLMTQTTSG 511 Query: 782 IDPSYQNLY-VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------- 833 I+P + +Y + ++ + V+E D ++E ++ K+ + N Sbjct: 512 IEPVFLPVYRRRRKVNPNDAEARVDFVDETG--DAFEEYIVFHHKFVTWMLANGFSASKK 569 Query: 834 -----IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 +E + AT+ ++D + + R QKW+D + S+ + L + L + Sbjct: 570 YTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPADVTEDLVNS 629 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915 +Y +AW G K R S + V ST Sbjct: 630 LYVEAWRCGCKGCTVYRDGSRSGVLLST 657 >gi|260593155|ref|ZP_05858613.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319] gi|260534863|gb|EEX17480.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319] Length = 902 Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 172/713 (24%), Positives = 301/713 (42%), Gaps = 121/713 (16%) Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFF 321 +K ++ FD VY + L Y F + L ++ ++Y + + I + P+ Sbjct: 33 LKRTMVTNQTYSFDEVYQTS-LAY---FNGDELAARVWVNKYAMKDSLGNIYEKSPEQMH 88 Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTT 375 R+A +A E K K + E +NLL F ++ + + G H LS+CF+ Sbjct: 89 RRIAKEIARIE-HKYKNPLTEEEIFNLLDHFRYIIPAGSPMTGIGNDHQVASLSNCFVIG 147 Query: 376 VPDDL--YG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + D YG I +E L K GG+G+D + +R G+ +H + S G++PF++ + Sbjct: 148 LDGDADSYGAILRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVHNSALTSTGLVPFMERYS 207 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 ++ V Q G R+GA+ + H D E F+D + G + N + I D FM+ Sbjct: 208 NSTREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMRA 262 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 + Y ++F I D E K +K+SA ALW K++ Sbjct: 263 AIDDKP---------------YEQQFPI---------DSTEPKCTKKVSAKALWEKIVHN 298 Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLL 608 +++ P + F D S P + + S+N C EI L C L S+NL Sbjct: 299 AWKSAEPGVLFWDTIIRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSLNLY 354 Query: 609 AH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINC----------------------- 640 ++ F ++ FD+D + + A R++D+++D+ Sbjct: 355 SYVLDPFTDHACFDFDLFSKHAQLAQRIMDDIVDLEMEKIDLIMAKVKSDPQVDEVKEAE 414 Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 H EK K + R G+G+ + + + Y + EA + + ++ +A +SV Sbjct: 415 YHLWEKIKDKSGKGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVSVHRALALNAYRSSV 474 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +A+ERGA++ + + F I L E +L ++E+ + G R Sbjct: 475 RMAEERGAFAIYDAKREEHNPF----ILRLKEADAQL---------YEEMIR----YGRR 517 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNE 809 N C+ IAPT T + + + I+P + +Y + +++ DF V +SF Sbjct: 518 NIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYI 577 Query: 810 LKQRDL--WDE--AMISDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + R W E + + KY I ++R P ATA ++D + + Q Sbjct: 578 VYHRKFLTWMEVNGIDTQKKYSQEEIDTLVKRSP----YYKATANDVDWLMKVRMQGTIQ 633 Query: 865 KWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914 KW+D + S+ + L + L + +Y +AW G K T Y SRS + S Sbjct: 634 KWVDHSISVTVNLPNSVDEALVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVS 686 >gi|326914626|ref|XP_003203625.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Meleagris gallopavo] Length = 221 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 111/172 (64%), Gaps = 1/172 (0%) Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK+++ G+RNS ++ PTA+ A I G ++SI+P N+Y + +SG+F VVN Sbjct: 12 WKALKEKIAKHGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPH 71 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L+ +L +R LW+E M + + H+GSI NI IP DLK+++ T +EI +++ A+ R Sbjct: 72 LLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGA 131 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR++ A + + TL Sbjct: 132 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 183 >gi|254000336|ref|YP_003052399.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. SIP3-4] gi|313202290|ref|YP_004040948.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. MP688] gi|253987015|gb|ACT51872.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. SIP3-4] gi|312441606|gb|ADQ85712.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. MP688] Length = 714 Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 153/628 (24%), Positives = 270/628 (42%), Gaps = 67/628 (10%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRH--PQLSSCFLTT- 375 + RVA LA E KR+ + L + + + N+G + P S+ T Sbjct: 47 YKRVARALADAEETDAKRSFWYERFLWALRRGAIPAGRITSNAGAQEHKPATSTINCTVS 106 Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D + GI + E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 107 GIIEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDK 166 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA A + H DV +F+ ++ G R N + I FM+ V Sbjct: 167 MCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKREAG----RLRQFNLSTLITKEFMEAV 222 Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKIS 541 +A W L P + D + +E+ + + R++D G++ +V++ I Sbjct: 223 KADAEWKLAFPVTEKEANQDSLNLEDPTQVVWREWPVKNKYLTRESD-GKVACRVYKTIK 281 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LW +++ ++ P D N + + ++N C E L C Sbjct: 282 AQRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPP----YGACL 337 Query: 602 LGSINLLAH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGS+NL F + FD+++ + T R+LDNV+++N + + + R Sbjct: 338 LGSVNLTKFVREPFTDKAWFDWEEYREVVATFTRMLDNVVEVNGLPLPQQQAEIMRKRRH 397 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YS 709 G+G +G S L +L + Y ++ +E + ++ VELA+E+G + Sbjct: 398 GMGYLGLGSTLTMLKMKYGDDASLTFTEEVTKIMAEVGWQVGVELAEEKGPAPIMDEEFV 457 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMA 765 L + D I L +V+ ++ M SR P D+L+K++ G+R ++ + Sbjct: 458 VTADLLAKRPEMVKDGIKLGDKVKGKVLMGLYSRYMQQFP-DKLRKQIAKNGVRFTHHSS 516 Query: 766 IAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDE 818 IAPT TI AN S I+PS+ + Y ++ + V+ F L R+L + Sbjct: 517 IAPTGTISLSLAN--NASNGIEPSFAHHYARNVIREGKKSKEKVDVFSYELLAYRELIN- 573 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLY 876 S + + D + D I A A +D I++A+ QKWID ++++N+ Sbjct: 574 --ASAMPFSDKPEEQLPEYFMDSSTISAKA-HVD----IQAAA--QKWIDSSISKTINVP 624 Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 D G D IY A+ GLK R Sbjct: 625 TDYDFGDFKD-IYLYAYEKGLKGCTTFR 651 >gi|237712420|ref|ZP_04542901.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237726611|ref|ZP_04557092.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229435137|gb|EEO45214.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229453741|gb|EEO59462.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 848 Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 165/702 (23%), Positives = 291/702 (41%), Gaps = 117/702 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A + Y LL Sbjct: 19 FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL----QENAMLAKYSGG 399 F ++ S T + + LS+CF+ + D +GA+ +E L K GG Sbjct: 79 DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGI-DGAADSYGAIIRIDEEQVQLMKRRGG 137 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 138 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDS 196 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 E F+D + G + N + + D FM+ + P V ++ KE Sbjct: 197 EAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYP--VDSDQPVFTKE-- 248 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578 I A ALW+K++ +++ P + F D S P + + Sbjct: 249 --------------------IDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288 Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630 + S+N C EI L C L +INL ++ N FD+D + A R Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQR 344 Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665 ++D++ID+ IEK KKS R G+G+ Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + + Y + +A E +++ + I+ A +SV +A+ERGA++ + F Sbjct: 404 MLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E L ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLKEADPNL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833 + +Y K N + T V+ V+E D ++E ++ K+ + N Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562 Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 I+ + + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 563 QEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +AW G K R S + V ST K K +P P Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664 >gi|282880763|ref|ZP_06289459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella timonensis CRIS 5C-B1] gi|281305297|gb|EFA97361.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella timonensis CRIS 5C-B1] Length = 861 Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 158/684 (23%), Positives = 289/684 (42%), Gaps = 109/684 (15%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F+ + L ++ ++Y + + I + P+ R+A + E + E A E + LL Sbjct: 20 FSGDELAARVWVNKYAMKDSFGHIYEKSPKDMHWRIANEIVRIENKYENPLSAQEVFELL 79 Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400 F ++ + + G H LS+CF+ + D YG I +E L K GG+ Sbjct: 80 DHFKYIIPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + I D FM+ + Y ++F + Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDEFMQAAIDDKP---------------YVQQFPV 239 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578 D E + ++I+A +LW K++ +++ P + F D S P + + Sbjct: 240 ---------DSDEPSMKKEIAAKSLWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290 Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 S+N C EI L C L SINL ++ N FD +K A ++ A R+ Sbjct: 291 FRTVSTNPCGEIPLCPYDS----CRLLSINLYSYVVNPFTSDAYFDMEKFAKHVQIAQRL 346 Query: 632 LDNVID-----INC-------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 +D+++D I+C H EK K+ + R G+G+ L Sbjct: 347 MDDIVDLELEKIDCILEKIKLDPQSEEVKETERHLWEKIKRKSGQGRRTGVGITAEGDML 406 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + Y + EA E + + ++ +A +SV +AQERGA+ F Sbjct: 407 AAMGLRYGTKEATEFSVNIHKTLALNAYRSSVTMAQERGAFEVFDAK------------- 453 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 E + + P +L + ++ G RN C+ IAPT T + + + I+P + Sbjct: 454 --REANNPFLLRIKEADP--QLYEDLQKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834 +Y + ++ T V+ V+E+ D ++E ++ K+ + N I Sbjct: 510 PVYKRRRKVNPSDTDVHVDFVDEVG--DSFEEYIVYHKKFLEWMKVNGIDTTKRYTQEEI 567 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893 +++ + ATA ++D + ++ QKW+D + S+ + L + L + +Y +AW Sbjct: 568 DQLVEQSPYYKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPHDVDEALVNRLYVEAW 627 Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917 G K R S V S K Sbjct: 628 KSGCKGCTIYRDGSRAGVMISVSK 651 >gi|265752122|ref|ZP_06087915.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236914|gb|EEZ22384.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 848 Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 165/702 (23%), Positives = 291/702 (41%), Gaps = 117/702 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A + Y LL Sbjct: 19 FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL----QENAMLAKYSGG 399 F ++ S T + + LS+CF+ + D +GA+ +E L K GG Sbjct: 79 DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGI-DGAADSYGAIIRIDEEQVQLMKRRGG 137 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 138 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDS 196 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 E F+D + G + N + + D FM+ + P V ++ KE Sbjct: 197 EAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYP--VDSDQPVFTKE-- 248 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578 I A ALW+K++ +++ P + F D S P + + Sbjct: 249 --------------------IDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288 Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630 + S+N C EI L C L +INL ++ N FD+D + A R Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQR 344 Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665 ++D++ID+ IEK KKS R G+G+ Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + + Y + +A E +++ + I+ A +SV +A+ERGA++ + F Sbjct: 404 MLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E L ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLKEADPNL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833 + +Y K N + T V+ V+E D ++E ++ K+ + N Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562 Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 I+ + + AT+ ++D + ++ R QKW+D + S+ + L + L + +Y Sbjct: 563 QEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +AW G K R S + V ST K K +P P Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664 >gi|154491701|ref|ZP_02031327.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC 43184] gi|154087942|gb|EDN86987.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC 43184] Length = 856 Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 149/628 (23%), Positives = 262/628 (41%), Gaps = 105/628 (16%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394 E + L F ++ S T + + LS+CF+ + D YG I +E L Sbjct: 82 ELFALFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDADSYGAIIRIDEEQVQLM 141 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 142 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 200 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + I D FM+ V +P Y Sbjct: 201 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVING------TP---------Y 241 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 +++ I D E ++I+A LW+K++ +++ P + F D S P Sbjct: 242 KQQYPI---------DSSEPTNVKEINAAELWKKIIHNAWKSAEPGVLFWDTILRESVPD 292 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + S+N C EI L C L +INL ++ N FD+D + Sbjct: 293 SYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKEAYFDFDLFRKHV 348 Query: 626 RTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLM 661 A R++D++ID+ H EK +K R G+G+ Sbjct: 349 ILAQRIMDDIIDLESEKIEKILEKIDADPESLEVKQSERHLWEKIQKKTLQGRRTGVGIT 408 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L + Y + EA E A++ + ++ A +SVE+A+ERGA+ + ++ F Sbjct: 409 AEGDMIAALGLRYGTEEATEFAEKVQKMLALAAYRSSVEMAKERGAFDIYDAKREEKNPF 468 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 I L E EL +D++ K G RN C+ IAPT T + + + Sbjct: 469 ----INRLREADPEL---------YDDMVK----YGRRNIACLTIAPTGTTSLMTQTTSG 511 Query: 782 IDPSYQNLY-VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------- 833 I+P + +Y + ++ + V+E D ++E ++ K+ + N Sbjct: 512 IEPVFLPVYRRRRKVNPNDAEARVDFVDETG--DAFEEYIVFHHKFVTWMLANGFSASKK 569 Query: 834 -----IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 +E + AT+ ++D + + R QKW+D + S+ + L + L + Sbjct: 570 YTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPADVTEDLVNS 629 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915 +Y +AW G K R S + V ST Sbjct: 630 LYVEAWKCGCKGCTVYRDGSRSGVLLST 657 >gi|330995971|ref|ZP_08319865.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paraprevotella xylaniphila YIT 11841] gi|329573968|gb|EGG55546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paraprevotella xylaniphila YIT 11841] Length = 845 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 156/652 (23%), Positives = 266/652 (40%), Gaps = 109/652 (16%) Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSC 371 P+ R+A +A E + E +A E + LL F ++ + + G H LS+C Sbjct: 47 PEDMHWRIANEIARIENKYENPLKAEEIFGLLDHFKYIIPAGSPMTGIGNNHQIASLSNC 106 Query: 372 FLTTV---PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 F+ + D GI +E L K GG+G+D + +R G+ + + S G++PF+ Sbjct: 107 FVIGLDGQADSYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 166 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + +++ V Q G+R GA+ + H D E F+D + G + N + I D Sbjct: 167 ERYSNSTREVAQDGRR-GALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDE 221 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM + +T P D V + I+A LW+K Sbjct: 222 FMHAAIEGKSYTQQYP------------------------IDSSSPMVAKDINAQDLWKK 257 Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604 ++ +++ P + F D S P + + S+N C EI L C L + Sbjct: 258 IVHNAWKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 313 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC------------------- 640 INL A+ N FD+D ++ A R++D++ID+ Sbjct: 314 INLYAYVVNPFTPEAYFDFDLFKKHVQLAQRLMDDIIDLELEKIEMILQKVDADPESEEV 373 Query: 641 -----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 H EK K + R G+G+ L L + Y + EA + A E + ++ A Sbjct: 374 KGTERHLWEKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTQEATDFAVEVHKTVALQAY 433 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +SV++A+ERGA+ F F I L E EL N Sbjct: 434 RSSVQMAKERGAFKIFDAEREKNNPF----INRLREADPELYENMVK------------- 476 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814 G RN C+ IAPT T + + + I+P + +Y + ++ + V+ ++E D Sbjct: 477 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDPEVHIDFIDETG--D 534 Query: 815 LWDEAMISDLKY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASR 862 ++E ++ K+ +D + D+L ATA ++D + ++ Sbjct: 535 AFEEYIVYHHKFLTWMKINGYDTEKRYTQEEIDELVARSPYYKATANDVDWLMKVKMQGA 594 Query: 863 RQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSV 911 QKW+D + S+ + L ++L + +Y +AW G K T Y SRS + Sbjct: 595 IQKWVDHSISVTVNLPNNVDEELVNQLYVEAWRSGCKGCTIYRDGSRSGVMI 646 >gi|15451586|gb|AAK98710.1|AC069158_22 Putative ribonucleotide reductase [Oryza sativa Japonica Group] Length = 236 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 111/177 (62%), Gaps = 1/177 (0%) Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 ++R W +L++ + +G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 21 SARWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV 80 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+++L + +W + + + Y DGS+ I IPDDLK I+ T +EI +++ A Sbjct: 81 VVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKTIVDMA 140 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 R +IDQ+QSLN+++D+P+ KL ++ AW GLKT YYLR+R+A K T+ Sbjct: 141 IDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 197 >gi|94263673|ref|ZP_01287482.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1] gi|93455978|gb|EAT06133.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1] Length = 1128 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 132/274 (48%), Gaps = 35/274 (12%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL + + D++KL +R AV LDNV+DIN + + + ++ +R IGLG Sbjct: 675 CNLGSINLARMVTDKEIDWEKLGQVVRKAVHFLDNVVDINNYPLPEIERVTKLNRKIGLG 734 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF L L IPY+S EA A+E M FI A+ AS+EL + RG + +F S++ Sbjct: 735 VMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIELGKARGPFPNFSDSIYG-- 792 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 ++ +RN+ IAPT TI+ + G S Sbjct: 793 -------------------------------RQDPDRPVRNATRTTIAPTGTISILAGCS 821 Query: 780 QSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++P + +++ M D VN K+ + + +I + Y +G++ IE +P Sbjct: 822 SGVEPLFAVSFLRRVMDNDELFEVNPLFEAVAKKENFYSHELIRQIAY-NGTVAGIEEVP 880 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 ++I TA +I P +E + Q+ + A S Sbjct: 881 QKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVS 914 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 38/293 (12%) Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA------LKETEKEKRAVEFYNLLSSFHFM 352 +L RY +G +E PQ RVA +A + + E ++FYNL++ FM Sbjct: 27 VLKKRYLKKDEHGKVLETPQQMLWRVAKTVAEADHLYAQGADTEALGLDFYNLMAGLEFM 86 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G + QLS+CF+ + D + IF A+++ A++ + GG G ++ +R Sbjct: 87 PNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSFSRIRPKND 146 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 +H T G S G + F+ V + + QGG R+GA A L H D+ +F+ ++ D Sbjct: 147 VVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIKVK----SD 202 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 H+ N + I D FM+ + N + L +P N E Sbjct: 203 LDLLHNFNLSVAITDEFMRALADNGEYALRNP------------------RNNE------ 238 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + R SA ++R+++ + +G P + F D N +P G + S+N C Sbjct: 239 ---IIRYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNPC 288 >gi|29347555|ref|NP_811058.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides thetaiotaomicron VPI-5482] gi|29339455|gb|AAO77252.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides thetaiotaomicron VPI-5482] Length = 796 Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 154/631 (24%), Positives = 265/631 (41%), Gaps = 107/631 (16%) Query: 339 AVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAM 392 A E Y+LL F ++ S T + + LS+CF+ V D YG I +E Sbjct: 22 AKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQ 81 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 82 LMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSV 140 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 H D E F+D + G + N + + D FM+ + P E ++ Sbjct: 141 SIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKPYIQQYPIESANP-- 194 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS- 571 ++I A LW+K++ +++ P + F D S Sbjct: 195 ----------------------TTTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESV 232 Query: 572 PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623 P + + + S+N C EI L C L +INL ++ N FD++ Sbjct: 233 PDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFKK 288 Query: 624 TIRTAVRVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGL 658 + A R++D++ID+ IE+ KKS R G+ Sbjct: 289 HVALAQRIMDDIIDLELEKIERIMEKIDQDPEGEEVKHAERNLWNKIYKKSGQGRRT-GV 347 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+ L L + Y + EA E +++ + ++ A +SVE+A+ERGA+ + Sbjct: 348 GITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYSNEREQN 407 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 F I LAE EL + E+KK G RN C+ IAPT T + + Sbjct: 408 NPF----IQRLAEADPEL---------YAEMKK----YGRRNIACLTIAPTGTTSLMTQT 450 Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHD 828 + I+P + +Y + ++ + T V+ V+E D ++E ++ K Y Sbjct: 451 TSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDP 508 Query: 829 GSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 + E I + + K AT+ ++D + ++ R QKW+D + S+ + L + L Sbjct: 509 AKRYSQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDL 568 Query: 886 -DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + +Y +AW G K R S + V ST Sbjct: 569 VNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 599 >gi|297539886|ref|YP_003675655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera sp. 301] gi|297259233|gb|ADI31078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera sp. 301] Length = 721 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 164/669 (24%), Positives = 286/669 (42%), Gaps = 78/669 (11%) Query: 288 ERDFAFEYLGLQILYDRYFLHIN-GSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNL 345 E++ + + L I +Y L G ++ A + RVA LA ET EKRA Sbjct: 16 EKEIPIQAVSLDIWDKKYRLKTKAGEHVDADIDASYARVARALADVETTDEKRAEWHEKF 75 Query: 346 LSSFH--FMCSTPTLFNSGT-RHPQLSSCFLTTVP----DDLYGIFGALQENAMLAKYSG 398 L + + + N+G H +S TV D + I G + E + K Sbjct: 76 LWALRRGAIPAGRITSNAGALEHKPATSTINCTVSGVISDSMDDILGKVHEAGLTLKAGC 135 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G +++ +R GA + G + G + F+ + + V+ G R+GA A + H D Sbjct: 136 GIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVS 508 V +F+ ++ G R N + I FM+ V +A W L P + Sbjct: 196 VTDFIKAKRENG----RLRQFNLSCLITKEFMEAVKADAEWKLAFPVTEKEAIIDGLNTN 251 Query: 509 DLHDLYGKEFEIA--YENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFK 564 DL + +E+ I Y D G++ +V++ I A LW +++ ++ P Sbjct: 252 DLAQVVWREWPIKGKYLTKLDGVDAGKVACRVYKTIKARRLWDVIMSSTYDFAEPGFILI 311 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ-FDYD 619 D N + + ++N C E L C LGS+NL F + FD+ Sbjct: 312 DRVNEMNNNWFCENIRTTNPCGEQPLPP----YGACLLGSVNLTRFVKKPFTDEAYFDWK 367 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + + R+LDNV++IN +++ + R G+G +G S+L ++ + Y E+ Sbjct: 368 EYREVVAIFTRMLDNVVEINGLPLQEQRDEIMRKRRHGMGYLGLGSSLTMMKLKYGEEES 427 Query: 680 VEIADESMEFISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEV 732 ++ DE ++ + V+LA+E+G + L + D I + ++ Sbjct: 428 LKFTDEVTRVMAEEGWNTGVQLAEEKGPAPIMDEKFEVTADMLAKRPEMAADGIKVGQKI 487 Query: 733 RDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMAIAPTATI----ANICGVSQSIDP 784 ++ + + SR P + L+ ++ G+R ++ +IAPT TI AN S I+P Sbjct: 488 AGKVLLGKYSRYMQQFP-EGLRNQIAAKGVRFTHHSSIAPTGTISLSLAN--NASNGIEP 544 Query: 785 SYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-- 839 S+ + Y ++ + V+ F L R+L + + + + D E++PD Sbjct: 545 SFAHHYARNVIREGKKSKEKVDVFSYELLAYRELINP---NAMPFSDKP---EEQLPDYF 598 Query: 840 -DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF--IYRQAWLM 895 D I A A +D I++AS QKWID S++ ++ P+ DF IY A+ Sbjct: 599 LDSSTIMAKA-HVD----IQAAS--QKWID--SSISKTINVPTDYDFEDFKNIYLYAYDK 649 Query: 896 GLKTTYYLR 904 GLK R Sbjct: 650 GLKGCTTFR 658 >gi|209694807|ref|YP_002262735.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238] gi|208008758|emb|CAQ78955.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238] Length = 717 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 163/658 (24%), Positives = 280/658 (42%), Gaps = 62/658 (9%) Query: 290 DFAFEYLGLQILYDRYFL-HINGSRIEMP-QAFFMRVAMGLA-LKETEKEKRAVEFYNLL 346 + A++ + I +Y L + G+R+++ F RVA L+ L++ ++K+ E + Sbjct: 16 EIAYQSTSMDIWESKYCLKNKQGNRVDLSMDDTFKRVAKALSDLEQPAEQKQWNEQFLWA 75 Query: 347 SSFHFMCSTPTLFNSGT--RHPQLSSCFLT---TVPDDLYGIFGALQENAMLAKYSGGLG 401 + + N+G P S+ T T+ D + I G + E + K G+G Sbjct: 76 LRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIVDSMDDILGKVHEAGLTLKAGCGIG 135 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 D++ +R GA + G + G + F+ + + V+ G R+GA ++ H DV + Sbjct: 136 YDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVID 195 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----DLHDLYG-- 515 F+ ++ G R N + I + F++ V W L P + D DLY Sbjct: 196 FIRAKREDG----RLRQFNLSLLITEDFVEAVKNQNDWQLIFPITLKEAKLDHMDLYSDN 251 Query: 516 ----KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 ++ + E + KV+R + A LW ++T ++ P D N + Sbjct: 252 SVVWADWPVKEGFAENEEGLVACKVYRTMPAQNLWNIIMTSTYDYAEPGFILIDKVNQMN 311 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTI 625 + ++N C E L C LGSIN L F N FD+D + + Sbjct: 312 NNWFCEEIRATNPCGEQPL----PPYGACLLGSIN-LTKFVRNPFTDTAFFDWDAYRNVV 366 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R+LDNV++IN +E+ + R G+G +G S L +L Y S E++ ++ Sbjct: 367 SIFTRMLDNVVEINQLPLEQQRHEIMHKRRHGMGFLGLGSTLTMLQHKYGSIESIGFTEQ 426 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAM 738 + ++ + ++LA E+G+ + S L + D I L +V+ ++ Sbjct: 427 VAQEMAVTGWKSGLDLAAEKGSAPIMEESFIVTAKMLRQRPEMAEDGIKLGDKVKGKVLH 486 Query: 739 NRTSR----LPWDELKKRVKTI--GMRNSNCMAIAPTATI----ANICGVSQSIDPSYQN 788 + SR L E K K I G+R ++ +IAPT TI AN S I+PS+ + Sbjct: 487 AKYSRYMQQLAIIEPKLVAKIIEQGVRFTHHSSIAPTGTISLSLAN--NASNGIEPSFAH 544 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 Y ++ + S V+ L A+I+D K S ++PD TA Sbjct: 545 HYTRNVIKTGKKSKES--VDVYSYELLAYRALIND-KAMPYSTNEENKLPD----YFITA 597 Query: 849 FEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 +I P + + QKWID +++ N+ D P + D IY A+ GLK R Sbjct: 598 DDITPQQHVAVQAAAQKWIDSSISKTANIPTDFPFEEFKD-IYMDAYDKGLKGCTTFR 654 >gi|55378393|ref|YP_136243.1| ribonucleoside-diphosphate reductase subunit alpha [Haloarcula marismortui ATCC 43049] gi|55231118|gb|AAV46537.1| ribonucleoside-diphosphate reductase alpha chain [Haloarcula marismortui ATCC 43049] Length = 1032 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 160/664 (24%), Positives = 262/664 (39%), Gaps = 142/664 (21%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F + FM ++PTL N+G QLS+CF+ + DD+ I +E A + + GG+G Sbjct: 148 FQEQMEQLSFMPNSPTLMNAGDELQQLSACFVDSPGDDIDDIHQTAKEAAQVFQSGGGMG 207 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G + T G + G I F++ + + QGG R+GA + H DV + Sbjct: 208 YAFWKLRPYGDPVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVIQ 267 Query: 462 FL-----------DLRKNTGDD-------------RRRTHD------------------M 479 F+ LR N DD R D Sbjct: 268 FIHAKNKDVSLAETLRLNDPDDFTHNSFAEALEEARELIDDDGQVPKHLRNAVEGHLSNF 327 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYENYERQAD 530 N + + D FM+ + +T +P +E +L+D++G + Sbjct: 328 NISVGVTDDFMEALKAGEEFTFTNPRTGDAHIVTEETKELYDMFGL------------GE 375 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--------SS 582 E+ I A LW ++ E G P + + + N +QH V ++ Sbjct: 376 HVEVGEELSIPAEELWDDIVEGAHENGEPGVIYLERVN----KQHSFDVEEHPDHEILAT 431 Query: 583 NLCTEITLNSSSEETAVCNLGSINLL---------------AH-------------FANN 614 N C E L EE CNLG INL AH F Sbjct: 432 NPCGEQPL----EEYEACNLGHINLSTLAATDAPDWRVWSEAHADEYDSIDAAIDAFLEE 487 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D+D+ I R L+NV+ ++ +EK ++ R IGLG+MG L + Y Sbjct: 488 AIDWDEFDRRIELGTRFLENVVTMSDFPVEKIEQKVREMRKIGLGIMGLAQLYIQLGVAY 547 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 + EA EIA ++M I+ + +AS ELA+ERG ++ ++ S + P D + Sbjct: 548 GTEEANEIARQTMRHINHGSKAASHELAEERGVFTEWENSKY---ANPTDYSDWFEKQTG 604 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS- 793 E A + P +RN N IAPT T + I + +P Y Y K+ Sbjct: 605 EDAADWEDGYP------------IRNHNTTTIAPTGTTSMIGNTTGGCEPIYNVAYYKNV 652 Query: 794 --NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDLKK 843 ++ GD +V + + + L+ D+ EA+ + + DG G + +PD + + Sbjct: 653 SDDVQGDEMLVEFDDYFLRALEDNDIDVEAVKQEAQEQMANNEFDGVDG-LTTVPDAIGE 711 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLD---EPSGKKLDFIYRQAWLMGLK 898 + T ++ Q+ +D A +++N D E + + ++IY G Sbjct: 712 LFVTTGDLSAKQHAGIQVACQEGVDSAISKTVNAPNDSTTEDAAEVFEYIYDHG---GKG 768 Query: 899 TTYY 902 TYY Sbjct: 769 VTYY 772 >gi|330831086|ref|YP_004394038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas veronii B565] gi|328806222|gb|AEB51421.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas veronii B565] Length = 715 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 153/627 (24%), Positives = 259/627 (41%), Gaps = 66/627 (10%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT-TV 376 + RVA LA +E E E F L + T H +S C ++ T+ Sbjct: 49 YQRVARALAEQELEPEAWYEPFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTI 108 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + I G + E + K G+G D++ +R GA + G + G + F+ + + Sbjct: 109 EDSMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCF 168 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+ G R+GA ++ H DV EF+ ++ G R N + I + F+K V ++ Sbjct: 169 TVSSAGGRRGAQMGTMDIRHPDVIEFIQAKREDG----RLRQFNLSLLITEDFVKAVKED 224 Query: 497 AGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQA-----DRGEI--KVFRKISAVALW 546 A W+L P EV ++ + ++ + + G++ KV++ + A LW Sbjct: 225 APWSLIFPYTAKEVEQDGIALDDPAQVLWADWPNKEGVVFNELGQVACKVYKTMPARKLW 284 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++T ++ P D N + + ++N C E L C LGS+N Sbjct: 285 NVIMTSTYDYAEPGFILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSVN 340 Query: 607 LLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + FD+ + R+LDNV++IN + K ++ R G+G + Sbjct: 341 LTKFVRDPFTESAAFDWQAFRKVVAIFTRMLDNVVEINQLPLAKQREEITAKRRHGMGFL 400 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV- 720 G S L +L I Y S +V ++ + ++ S+ LA+E+G + G Sbjct: 401 GLGSTLTMLQIKYGSAASVAFTEQVSQELAMTGWQESLRLAKEKGPAPIMEQEFEVTGKM 460 Query: 721 ------FPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAP 768 D I + +V+ ++ R SR L + +G R ++ +IAP Sbjct: 461 LRLRPEMAADGIKVGDKVKGKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAP 520 Query: 769 TATI----ANICGVSQSIDPSYQNLYVKSNM-----SGDFTVVNSFLVNELKQRDLWDEA 819 T TI AN S I+PS+ + Y ++ + S + V SF + L R+L + A Sbjct: 521 TGTISLSLAN--NASNGIEPSFAHHYSRNVIKPGKKSKESVDVYSFEL--LAYRELVNPA 576 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYL 877 Y D R+PD TA +I P ++ + Q WID +++ N+ Sbjct: 577 ATP---YAD---DEASRLPD----YFITADDISPAQHVDIQAAAQHWIDSSISKTANVPT 626 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 D P + D IY A GLK R Sbjct: 627 DFPFEQFKD-IYMYASDSGLKGCTTFR 652 >gi|310778932|ref|YP_003967265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ilyobacter polytropus DSM 2926] gi|309748255|gb|ADO82917.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ilyobacter polytropus DSM 2926] Length = 750 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 140/549 (25%), Positives = 245/549 (44%), Gaps = 79/549 (14%) Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 S+C++ T PDD + IF ++ A Y GG G D + +R G+ ++ + + G + F Sbjct: 77 SNCYVITPPDDNIESIFETAKKLARTFSYGGGCGVDISNLRPKGSEVNNSAKHTTGAVSF 136 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 + + N T + Q G+R GA+ ++ H DVE+F+ ++ D + N + I D Sbjct: 137 MDLYNLTTDIIGQKGRR-GALMLSIDVNHPDVEDFIKVK----SDLNKIQKANISVRIND 191 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FMK V + D++ EF + D GE + +K++A L++ Sbjct: 192 EFMKAVEKG---------------DMFKTEFIVG--------DTGET-ITKKVNARLLFK 227 Query: 548 KMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 ++ + P + F D N+ S + +N C E L C LGS Sbjct: 228 ELARQNWNFAEPGVLFWDTISNWNLLSEDEEFEYA-GTNPCAEEPLPPGGS----CLLGS 282 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMG 662 I L + F++++LA +R V+ L++V+D + H +E+ + S R IGLG++G Sbjct: 283 IVLPSFIEGEVFNFERLAERVRDGVKALNDVLDEGLPLHPLEEQRDSVRDWRQIGLGILG 342 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + + Y SPE++E D+ + I +A+ AS LA+E+G++ +K Sbjct: 343 LGDLLINMKLKYGSPESLEFCDKVSKTIVDNALRASALLAKEQGSFPKYKK--------- 393 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D + ++D + DE + ++ G+RNS + IAPT +I + S I Sbjct: 394 -DKVLASPFLKDNAS---------DETIELIEKYGLRNSQLLTIAPTGSIGTMLRTSTGI 443 Query: 783 DPSYQNLYVKSNMS--GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P++ Y + S G+ F +D DE I D +D Sbjct: 444 EPNFAFFYTRKTESLHGEDVFYKVFTP---IAKDYMDENGIED--------------END 486 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899 L TA ++P I+ Q+ ID + S + L + S ++++ +Y +AW GLK Sbjct: 487 LPDYFVTAQNLNPFDRIKMQGIWQRRIDASISSTINLVHKTSIEEVEDLYIEAWKQGLKG 546 Query: 900 TYYLRSRSA 908 R+ A Sbjct: 547 MTIYRAGCA 555 >gi|94265072|ref|ZP_01288839.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1] gi|93454451|gb|EAT04742.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1] Length = 1128 Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 132/274 (48%), Gaps = 35/274 (12%) Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL A+ + D++KL +R AV LDNV+DIN + + + ++ +R IGLG Sbjct: 675 CNLGSINLARMVADKEIDWEKLGQVVRKAVHFLDNVVDINNYPLPEIERVTKLNRKIGLG 734 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF L L IPY+S EA A+E M FI A+ AS+EL + RG + +F S++ Sbjct: 735 VMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIELGKARGPFPNFSDSIYG-- 792 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 ++ +RN+ IAPT TI+ + S Sbjct: 793 -------------------------------RQDPDRPVRNATRTTIAPTGTISILASCS 821 Query: 780 QSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 ++P + +++ M D VN K+ + + +I + Y +G++ IE +P Sbjct: 822 SGVEPLFAVSFLRRVMDNDELFEVNPLFEAMAKKENFYSHELIRQIAY-NGTVAGIEEVP 880 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 ++I TA +I P +E + Q+ + A S Sbjct: 881 QKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVS 914 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 38/293 (12%) Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA------LKETEKEKRAVEFYNLLSSFHFM 352 +L RY +G +E PQ RVA +A + + E A++FYNL++ FM Sbjct: 27 VLKKRYLKKDEHGKVLETPQQMLWRVARTVAEADHLYTQGADTEALALDFYNLMAGLEFM 86 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G + QLS+CF+ + D + IF A+++ A++ + GG G ++ +R Sbjct: 87 PNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSFSRIRPKND 146 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 +H T G S G + F+ V + + QGG R+GA A L H D+ +F+ ++ D Sbjct: 147 VVHSTKGVSSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIKVK----SD 202 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 H+ N + I D FM+ + N + L +P N E Sbjct: 203 LDLLHNFNLSVAITDEFMRALADNGEYALRNP------------------RNNE------ 238 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 V + SA ++R+++ + +G P + F D N +P G + S+N C Sbjct: 239 ---VVKYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNPC 288 >gi|115379423|ref|ZP_01466524.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella aurantiaca DW4/3-1] gi|310822416|ref|YP_003954774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Stigmatella aurantiaca DW4/3-1] gi|115363562|gb|EAU62696.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella aurantiaca DW4/3-1] gi|309395488|gb|ADO72947.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Stigmatella aurantiaca DW4/3-1] Length = 926 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 162/676 (23%), Positives = 265/676 (39%), Gaps = 110/676 (16%) Query: 292 AFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVA---------MGLALKETEKEKRAV 340 A+ L ++ +YF + G+ R + RV G +E ++E Sbjct: 72 AWSMLATNVVASKYFRGVPGTPEREGSVRKLVARVVDTLTRWGQEGGYFAREQDRETFQA 131 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E +LL ++P FN G PQ S+CF+ +V D + I + AML KY G Sbjct: 132 ELTHLLLRQKAAFNSPVWFNVGVEEQPQCSACFINSVEDSMESILTLAKTEAMLFKYGSG 191 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458 G++ +P+R H+ G G + G + F+K + A V GGK R+ A L H D Sbjct: 192 TGSNLSPLRSSREHLTG-GGTASGPVSFMKGFDAFAGVVKSGGKTRRAAKMVILNASHPD 250 Query: 459 VEEFLDLRKN-----------------TGDDRRRTHDMNTAN--WIPDLFMKRVTQNAGW 499 + +F+ + N GD N+ N + D FM+ V + W Sbjct: 251 ILDFIRCKTNEEKKAWALIEAGYDASFNGDAYGSVFFQNSNNSVRVTDEFMRAVVNDGTW 310 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 T + D E +A E +FR+IS A G P Sbjct: 311 T------TRAVRDGQAMETHMARE------------LFREISEAA---------HLCGDP 343 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617 + F N + +++SN C+E S CNL S+NL+ HF + FD Sbjct: 344 GLQFDTTVNAWHTCANTARINASNPCSEYMFLDDS----ACNLASLNLM-HFRTIDGCFD 398 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + + ++ ++ + + EK +++H +R +GLG + L +PY SP Sbjct: 399 PVAFKHAVDVVLLAMEIIVGFSRYPTEKITRNSHDYRPLGLGYANLGALLMACGLPYDSP 458 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--- 734 E A + A +AS LA+ G ++ + Q P+ +G++ + R Sbjct: 459 EGRNYAGAITSLMCGQAYAASARLAERMGPFAGYA-----QNAEPM--LGVIRKHRKAGH 511 Query: 735 ELA-------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786 +LA ++ + WDE G RNS +APT TI + + I+P Sbjct: 512 QLAPEGVNPDLHAAQKAAWDEALALGTEHGFRNSQVTVLAPTGTIGFMMDCDTTGIEPDI 571 Query: 787 QNL-YVKSNMSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 + Y K G +VN + L++ R + +IS L ++ IE P LK Sbjct: 572 ALIKYKKLVGGGMLKIVNQTVPQALERLGYRQSQAQEIISYLDKNE----TIEGAP-HLK 626 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQ-----------SLNLYLDEPSGKKLDFI--- 888 H F D + R +W+ Q +++ ++ PS ++ I Sbjct: 627 PEHLPVF--DCAFKPARGKRSIQWMGHIQMMEACQPFLSGAISKTVNMPSNATVEDIEKA 684 Query: 889 YRQAWLMGLKTTYYLR 904 Y +AW GLK R Sbjct: 685 YLEAWKRGLKAIAVYR 700 >gi|145591871|ref|YP_001153873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum arsenaticum DSM 13514] gi|145283639|gb|ABP51221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum arsenaticum DSM 13514] Length = 1240 Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 104/367 (28%), Positives = 174/367 (47%), Gaps = 44/367 (11%) Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----------FDYDKLASTI 625 G+V S+ C E N VCNL INL+ +N D+D LA Sbjct: 826 GIV--SHNCAETVQNPFE----VCNLTHINLVKFVKDNCGGGSFEEKLGCIDWDGLAQAA 879 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R R LD+ ID + IE + N R GLG+MGF L L +PYAS EAVE+ + Sbjct: 880 RVGTRFLDDAIDRSKTGIEVIDEMNAATRKNGLGIMGFAELLIKLGVPYASWEAVELINR 939 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI----DSIGLLAE---------- 731 M +I +A+ S ELA+E+G + F S++ +G P+ D + E Sbjct: 940 IMGWIYVNALDESAELAREKGPFKFFHKSIYARGEIPVLKFQDHVWSRWERIKRVYPREL 999 Query: 732 ------VRDELAMNRTSRLPW-DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 +RD R P+ D+L ++V+ G+RNS ++IAPT + + G + ++P Sbjct: 1000 QEAGDKLRDITMRTRQWLGPYLDKLSEKVRG-GVRNSVVLSIAPTGRTSILAGTTSGVEP 1058 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + ++++ G + LK R LW + + G + + +P+D+K + Sbjct: 1059 VFALAFLRNVTVGTLVEYYEPGIELLKSRGLWT-PQVRKVVEETGMLRDAP-VPEDVKHL 1116 Query: 845 HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ATA EI +W + + Q+W+DQ ++++N+ + P + + + + AW +G+K Sbjct: 1117 LATAMEIGWLWHVLMQASAQQWVDQGISKTINMPANAPE-EDVYWAFAFAWAVGVKGITV 1175 Query: 903 LRSRSAT 909 R +S + Sbjct: 1176 YRDKSKS 1182 Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 159/353 (45%), Gaps = 24/353 (6%) Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291 +L VYK+ + + Y E + V A LL ++F L +++R Sbjct: 77 LLGRVYKEAFGKDFLKTKVGYGERAAARFKSLVDAGLLKREALEF-LSKFEPRPEFDRSL 135 Query: 292 AFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 ++ L L Y L R+ E P RVA +A +E E RA +Y+ ++ Sbjct: 136 SYNALRL-FTNGNYALRDQNFRLAETPSMAAWRVATAVA-RELE---RARLYYDYITKLK 190 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGIFGALQENAMLAKYSGGLGN 402 + ++P FN+ T+ +SCF V D L Y I+ AL + ++ + GG+G Sbjct: 191 IVPASPFWFNAWTKKEMFASCFTLEVEDCLSSITHPGRYCIYDALAYSGIIQQLGGGVGY 250 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 D++ +R G + G+ G + G I F+++ + + QGGKR+GA L WH D+ +F Sbjct: 251 DFSLLRPEGDVVRGSVGVASGPISFMRLFDTNVDVIKQGGKRRGAQMGTLHVWHPDIRKF 310 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKR---VTQNAGWTLFSPDEVSDLHDLYGKEFE 519 + + D + N + + D FM++ + QN + L +P + E+ Sbjct: 311 IKAKTGELKD-AHLQNFNISVFADDTFMEKALGIDQNPKYKLINPRAFVEKTGTKPVEY- 368 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 ER+ E V+ +I+A L++++ +++G P + FK N +P Sbjct: 369 ----VDEREVAIPEEAVWGEINAKELFKEIAHGAWDSGDPGMIFKSNLNASNP 417 >gi|171186058|ref|YP_001794977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoproteus neutrophilus V24Sta] gi|170935270|gb|ACB40531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoproteus neutrophilus V24Sta] Length = 1240 Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/373 (28%), Positives = 178/373 (47%), Gaps = 43/373 (11%) Query: 572 PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQF-------DYD 619 PQ H + S+ C E N VCNL INL+ A F D++ Sbjct: 818 PQHHRYIAEGIVSHNCAETVQNPFE----VCNLTHINLVKFARECAGKTFEEKLACIDWE 873 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 LA R R LD+ ID + IE + N R GLG+MGF L L IPYAS EA Sbjct: 874 GLAEAARLGTRFLDDAIDRSYTGIEVIDEMNRATRKNGLGIMGFAELLIKLGIPYASWEA 933 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI----DSI-GLLAEVRD 734 VE+ + M +I +A+ S ELA+ERG + F+ S + +G P+ D + G VR Sbjct: 934 VELINRIMAWIYVNALDESAELARERGPFKFFEKSAYARGEIPVLKFQDYVWGRWERVRG 993 Query: 735 EL------AMNRTSRLP-----W-----DELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 L A +R + W + L+++V+ G+RNS ++IAPT + + G Sbjct: 994 ALPPELREAGDRLRGITMRTREWLRPRLEALREKVRG-GVRNSVVLSIAPTGRTSILAGT 1052 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + ++P + ++++ G V L+ R LW + ++ G + + +P Sbjct: 1053 TSGVEPVFALAFIRNVTVGTLIEYYWPAVEWLRARGLWTPQVRKTVE-ETGMLKDAP-LP 1110 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896 +++K + ATA EI +W + + Q+W+DQ ++++N+ + P + + + + AW +G Sbjct: 1111 EEVKHLFATAMEIGWLWHVLMQASAQQWVDQGISKTINMPANAPK-EDVYWAFALAWALG 1169 Query: 897 LKTTYYLRSRSAT 909 +K R +S + Sbjct: 1170 VKGITVYRDKSKS 1182 Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 164/378 (43%), Gaps = 50/378 (13%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P A+V LL ++ +EV + + K+ + E RY + L ES+ Sbjct: 67 PELAEVAKSHLLGRVYKEVFGKDFLR-HKSGYLERA------LARYRQLAEAGLLKEESL 119 Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMRVAMGLALK 331 + A + K + D + Y L++ + Y L R+ E P RVA +A + Sbjct: 120 RLLE----AFEPKPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAAWRVATAVA-R 174 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGI 383 + E +R +Y +++S + ++P FN+ T+ +SCF V D L + I Sbjct: 175 DVETARR---YYGVITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLSHPGRFCI 231 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + AL + ++ + GG+G D++ +R G + G+ G + G + F+K+ + + QGGK Sbjct: 232 YDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDTNVEVIKQGGK 291 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--TQNAGWTL 501 R+GA L WH DV +F+ + D + N + ++ D FM++ + L Sbjct: 292 RRGAQMGTLHVWHPDVRKFIKAKTGELKD-AHLQNFNISVFVDDAFMEKALGLDKPEYPL 350 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW-------RKMLTMLF 554 +P I E R+ E +V AVA W R++ + Sbjct: 351 VNP--------------RIYLERAGRKPVE-ETRVSPPQEAVAGWVDARELFREITEGAW 395 Query: 555 ETGHPWITFKDPCNIRSP 572 ++G P + +KD N +P Sbjct: 396 DSGDPGVIYKDNLNASNP 413 >gi|257874881|ref|ZP_05654534.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus EC20] gi|257809047|gb|EEV37867.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus EC20] Length = 825 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 123/439 (28%), Positives = 197/439 (44%), Gaps = 57/439 (12%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 ++K +++I A LW + + P I F D N + G V ++N C E L Sbjct: 415 KVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLT 474 Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 AVCNL +INL A+ A+ Q D+ KL T++TAVR DNVID+ + +K ++ Sbjct: 475 PY----AVCNLAAINL-ANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPYFFDKNEQ 529 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R +GLG+MG L Y S E + D+ E ++ A AS+ELA+E+G++ Sbjct: 530 QAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKEKGSF 589 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G DQ ++ L + D M ++P +++ V G+RNS+ + +AP Sbjct: 590 PFLIGKN-DQ-----ETQALRKKFIDTGYMK---KMP-AHIREGVLRFGIRNSHLLTVAP 639 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T + + GVS ++P Y Y +S G F +N+ +V+E L D Sbjct: 640 TGSTGTMTGVSTGLEPYYSFSYYRSGRLGKFIEINAEIVDEY----LMDHP--------- 686 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885 ER +L +A E+ P + Q+W+D S++ ++ P G ++ Sbjct: 687 ------ERTKAELPAWFISAMELTPEEHVGVQCTIQRWVD--SSISKTVNAPKGYTVSQV 738 Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA----VPVTDPNSSTHSLG 939 +YR + G K T Y SR + + TL+ V+ +L A +PV + S Sbjct: 739 AKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLPVVQVDEPVASGE 795 Query: 940 IPSSCTSDT-----ECEVC 953 I C T C C Sbjct: 796 ICPICHEGTIEEIGGCSTC 814 Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 10/161 (6%) Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH 365 S IE P F RVA G++ E ++R E F+ + + + + + L+ +GT + Sbjct: 114 SDIEKPLELFFEQVAHRVAKGISANEAHDQERFFEAFHQQIVAQNLIPAGRVLYGAGT-N 172 Query: 366 PQLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 Q++ +CF+ + D GI QE + GG+G + + +R + +HG +G+S Sbjct: 173 SQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSGRSS 232 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 G + +L + V QGG R+GA + WH D+ F+ Sbjct: 233 GAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFI 273 >gi|10140983|ref|NP_065560.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1] gi|81984052|sp|O36411|RIR1_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|2338024|gb|AAC58108.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1] Length = 780 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 170/730 (23%), Positives = 293/730 (40%), Gaps = 111/730 (15%) Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDL-VYLANDL-KYERDFAFEYLGLQILYDRYFLHI 309 Y E F +EE V R L ++ +L +Y+ L Y+ + L + YD Y L Sbjct: 48 YIEKFADVLEENV-LRFLQDNAEMLELCIYMYEQLPAYKAVKSRGILSAKRFYDTYVLRT 106 Query: 310 -NGSRIEMPQAFFMRVA--------MGLALKET----EKEKRA------------VEFYN 344 +GS E FMR+A ALK T ++K + F++ Sbjct: 107 ADGSCYESVSHCFMRIAAFCTVQVLTNSALKITILYLGRDKLFKDLPCSPTMDLFIYFFS 166 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLG 401 LS C+TP + ++G R L+SCFL PD + LQE ML G+G Sbjct: 167 PLSHQLVCCATPIMRSAGLRDANLASCFLIN-PDLSTEKSTTTALLQELTMLLSAKSGVG 225 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + T I G + F N R +V AY+E WH ++E Sbjct: 226 CNVTSFGVDEKCIQSCVGLINSQVEFF----------NDQNPRPVSVAAYMEVWHSQIQE 275 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFE 519 FL ++ ++ R + IP LF ++ ++ G W LF P++ +L +LYG EF Sbjct: 276 FLAVK--LPENPSRCASIYQGLCIPKLFFEKFIEDPGQNWYLFKPEKSGNLANLYGDEFR 333 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578 YER G I +L ++ + +TG P+I +K+ CN + G Sbjct: 334 ---SEYERLVGIGCYA--DAIPIKSLMFLIINTIIKTGSPYIIYKEACNEHHWKNMEGCA 388 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQ-------------------- 615 + S+NLC E+ + + + CNL ++ L L +N+ Sbjct: 389 IASANLCAEV-IQYPGADVSTCNLANVCLPMCLVTVSNDSHSPLEKTYCGNVIESQAVSG 447 Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 F L + + AV +++ I + + R++G+G+ G + Sbjct: 448 VGFSMPILHAAVEVAVFLVNCAI-AGGKCVTPGMERGQRERSMGIGVHGLADVFAEMGYS 506 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVF---PIDSIGL 728 Y A + E E + F A+ S + + G + + S G F + + L Sbjct: 507 YLDERAARLDVEIFENMYFRAVKTSNNICRLGGGRPFEGWGESKLRHGFFHWQGWEDVNL 566 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + W++L +R + G+ NS +A+ PT + + G S+S P + N Sbjct: 567 SIPITE-----------WEKLSRRCISSGVYNSQFIALMPTVGSSLLTGFSESYYPYFAN 615 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-- 846 + K + + N N + + DL S G++ P+ LK+ ++ Sbjct: 616 ISSKVSSKEEVMKPNMTFWNRVSKEDLDTVRFFS---------GDVALFPEPLKEKYSLF 666 Query: 847 -TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT-Y 901 +AF+ + A R ++DQ+QS + +L E S + L + + +GLKT Y Sbjct: 667 LSAFDYCAEKQLARARLRAPFVDQSQSHSFHLKEENVVSARFLKDLILSGYTLGLKTIMY 726 Query: 902 YLRSRSATSV 911 Y + + +++ Sbjct: 727 YCKVKKQSTM 736 >gi|218673204|ref|ZP_03522873.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli GR56] Length = 442 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 123/470 (26%), Positives = 209/470 (44%), Gaps = 74/470 (15%) Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D++ R ++ +PD+ + N LFSP +V ++ + E + + Sbjct: 1 KRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSPYDVERVYGVPFTEISVTEKYR 60 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E AD K +KI A ++ + + FE+G+P+I F+D N +P G + SNLC Sbjct: 61 EMVADARISK--KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI--AGRISMSNLC 116 Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S + E CNLGS+N+ A A + D+ K TI T++R L Sbjct: 117 SEILQVSEASEYNEDLSYKHLGKDISCNLGSLNIAA--AMDSADFGK---TIETSIRALT 171 Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D++ ++ +K N AIGLG M L I Y S E V+ + +++ Sbjct: 172 AVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTY 231 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRT 741 HAI AS LA ERG ++ F+ S + G + P + + + D+ ++ Sbjct: 232 HAIRASNLLAVERGQSFKGFENSKYASGDYFDKYTEQEWKP--ATEKVQALFDKSGIHIP 289 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK V T G+ N N A+ PT +I+ I + SI P Sbjct: 290 TQEDWAALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP----------------- 332 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKIHATAFEIDPMWLI 857 +V++++ R +G IG + + +D + A+EI +I Sbjct: 333 ----IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLDYYQDAYEIGAEKII 375 Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++ + + +DQ SL L+ D + + ++ AW G+KT YY+R R Sbjct: 376 DTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLR 425 >gi|82492130|gb|ABB77927.1| ribonucleotide reductase alpha chain [Environmental halophage 1 AAJ-2005] Length = 1061 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 159/671 (23%), Positives = 268/671 (39%), Gaps = 127/671 (18%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 EF + M ++PT+ N+G QLS+CF+ + DD+ I + + A + + GG+ Sbjct: 146 EFQANMEKLGVMPNSPTIMNAGDELQQLSACFVNSPGDDIRDIHDKVADAADVFQSGGGM 205 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G + +R G + T G + G I F++ + + GGKR+GA + H D+ Sbjct: 206 GYAFHTLRPYGDVVGSTGGVASGPISFMRTFDQMCATIAAGGKRRGAQMGVMRVSHPDII 265 Query: 461 EFL-----------DLRKNTGDDRRRTH-------------------------------D 478 F+ L+ N DD + Sbjct: 266 HFIHAKNKDVSLKESLKLNDPDDFEHNSFSEALEEASELIDEDGQIPKHLRNAAEGHLSN 325 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM + + +TL +P + H K E+ Y Y+ + D E+ Sbjct: 326 FNISVGVTDGFMDALFNDEEYTLINP-RTQEPHIATAKTEEM-YSWYDLE-DHVEVGEEL 382 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVGVV----------HSSNLC 585 I A LW +M+ E G P + + D N + H +V H++N C Sbjct: 383 SIPATVLWERMIEGAHENGEPGVVYIDQINKDHSYDVESHCTIVDDDPMSQYEVHATNPC 442 Query: 586 TEITLNSSSEETAVCNLGSINL------------------------LAHFANN----QFD 617 E L E CNL INL LA +N D Sbjct: 443 GEQQLM----EGEACNLCHINLSTIVDQDAPDWRDWLDTHSDDYISLAECVDNYLEVALD 498 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y++L S I+T L+NV+ ++ ++K +++ +R IGLG+MG L + Y + Sbjct: 499 YEELDSRIQTGTHFLENVVTMSDFPLDKIEQTVADNRKIGLGIMGLAQMYIQLGVKYGTK 558 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 E EIA++ M+ I+ + S ELAQ RG +++++ S + P+D E Sbjct: 559 EGNEIAEQVMKHINHGSKQVSHELAQRRGVFANWEDSKY---ASPLDY---------EEW 606 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 R + E K +RN N IAPT T + + + +P Y Y K N+SG Sbjct: 607 FERQTGESAAEYADGFK---IRNHNTTTIAPTGTTSMLGNTTGGCEPMYNVAYYK-NVSG 662 Query: 798 D------FTVVNSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIH 845 D + + + L+ D+ +A+ + + DG + ++E +P+ L ++ Sbjct: 663 DVQGDEMLVEFDDYFMRMLEANDVDADAVKQEAQELMQANEFDG-VDDLETVPERLTELF 721 Query: 846 ATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLD---EPSGKKLDFIYRQAWLMGLKTT 900 T ++ QK +D A ++ N D E + + ++IY+ G T Sbjct: 722 VTTADLSAHQHASVQCALQKGVDAAISKTTNAPHDSSLEDAKEVFEYIYKNG---GKGVT 778 Query: 901 YYLRSRSATSV 911 YY A V Sbjct: 779 YYRDGTRAKQV 789 >gi|260588433|ref|ZP_05854346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Blautia hansenii DSM 20583] gi|260541307|gb|EEX21876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Blautia hansenii DSM 20583] Length = 763 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 115/436 (26%), Positives = 196/436 (44%), Gaps = 60/436 (13%) Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LS+C++ P+D + IF ++ A Y GG G D + + GA + T ++ G + Sbjct: 73 LSNCYVVEPPEDNIESIFDCAKKLARTYSYGGGCGVDISKLAPKGARVTNTAKETSGSVS 132 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 F+ + + + Q G+R GA+ + H D+EEF++++ D + N + I Sbjct: 133 FMDLYSLVTGLIGQNGRR-GALMISIACDHPDLEEFIEIKS----DLDKVTKANISIRIT 187 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 D FM V K F +++ E GE + ++I A +++ Sbjct: 188 DKFMLAVKMR-------------------KPFVLSFTREET----GET-IRKEIDAYSVF 223 Query: 547 RKMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 K+ M ++ P + F D N+ S + +N C E L + C LG Sbjct: 224 HKLCEMNWDYAEPGMLFWDRIENWNLLSADKEFSYA-GTNPCAEEPLPAGGS----CLLG 278 Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGL 660 SINL N+ F++ T+ AVR L+ V+D + H +++ ++S R IGLG+ Sbjct: 279 SINLSEFVTENKTFNFTDFKKTVDIAVRALNIVLDEGLPLHPLKEQRESVRDWRQIGLGI 338 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G L + I Y SPE++++ D +++ AI S +A E G+Y +K Q Sbjct: 339 FGLADLLIKIGIKYGSPESIDLCDMIGHAMAYQAIMTSNSIAIEVGSYPKYKPDAVKQSP 398 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 F + I DEL ++ + IG+ NS + IAPT +++++ GVS Sbjct: 399 FFTEHI-------DEL------------YRENISEIGLCNSQLLTIAPTGSLSSMLGVSG 439 Query: 781 SIDPSYQNLYVKSNMS 796 I+P Y N Y + S Sbjct: 440 GIEPVYANYYTRKTES 455 >gi|257865281|ref|ZP_05644934.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257871609|ref|ZP_05651262.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257799215|gb|EEV28267.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257805773|gb|EEV34595.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus EC10] Length = 825 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 123/444 (27%), Positives = 201/444 (45%), Gaps = 63/444 (14%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 ++K +++I A LW + + P I F D N + G V ++N C E L Sbjct: 415 KVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLT 474 Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 AVCNL +INL A+ A+ Q D+ KL T++TAVR DNVID+ + +K ++ Sbjct: 475 PY----AVCNLAAINL-ANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPYFFDKNEQ 529 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R +GLG+MG L Y S E + D+ E ++ A AS+ELA+E+G++ Sbjct: 530 QAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKEKGSF 589 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G DQ ++ L + D M ++P +++ V G+RNS+ + +AP Sbjct: 590 PFLIGKN-DQ-----ETQALRKKFIDTGYMK---KMP-AHIREGVLRFGIRNSHLLTVAP 639 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T + + GVS ++P Y Y +S G F +N+ +V+E L D Sbjct: 640 TGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIVDEY----LMDHP--------- 686 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885 ER +L +A E+ P + Q+W+D S++ ++ P G ++ Sbjct: 687 ------ERTKAELPAWFISAMELTPEEHVGVQCTIQRWVD--SSISKTVNAPKGYTVSQV 738 Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA-------VPVTDPNSSTH 936 +YR + G K T Y SR + + TL+ V+ +L A V V +P +S Sbjct: 739 AKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLSVVQVDEPVASGE 795 Query: 937 SLGIP--------SSCTSDTECEV 952 I C++ T C++ Sbjct: 796 ICPICHEGTIEEIGGCSTCTNCKI 819 Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH 365 S IE P F RVA G++ E+ ++R E FY + + + + + L+ +GT + Sbjct: 114 SDIEKPLELFFEQVAHRVAKGISANESHDQERFFEAFYQQIVAQNLIPAGRVLYGAGT-N 172 Query: 366 PQLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 Q++ +CF+ + D GI QE + GG+G + + +R + +HG +G+S Sbjct: 173 SQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSGRSS 232 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 G + +L + V QGG R+GA + WH D+ F+ Sbjct: 233 GAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFI 273 >gi|125860265|ref|YP_001036435.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV] gi|120969410|gb|ABM45853.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV] Length = 839 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 151/634 (23%), Positives = 259/634 (40%), Gaps = 104/634 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L+++RD+ YD + +E Q FMRVA+ + + +K +E Y+ Sbjct: 251 LRHDRDYT---------YDLRLYENKNNLLERVQHMFMRVALTMYGDDIQK---VIESYH 298 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 ++S + S +GT QL++ ++ D+++ + +QE A + G + Sbjct: 299 MMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVD 358 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 V + L V N+ + K ++E WH +V+ Sbjct: 359 LYMQNVS----------------VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKN 402 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F++ +N D + + + IPD+FM RV N WTL P+ + L YG +FE A Sbjct: 403 FIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQA 459 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVG 577 Y +E++ +I + A L + ++ + G+ + FKD N I Q Sbjct: 460 YVKFEKEHINAKI-----VKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFSIEDEQVKYN 514 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +V S+++ + +N ++ QFDY+ L + VR LD +I+ Sbjct: 515 IVFSASVAVDKCVNLETK-------------------QFDYNLLRRITKNVVRDLDAMIN 555 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + ++K + H I +G+ GF L LL + EA + E I + AI A Sbjct: 556 INMYPLDKFENKKHN---IAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEA 612 Query: 698 SVELAQ------ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 S ELA+ E G S++ Q ++ + N T W L + Sbjct: 613 SNELAEASKELNESGKNKSYRNEKITQQIYNV------------YTDNETLMWDWQSLHE 660 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +V+ G+++ ++ T I G + P LY ++ + LV L Sbjct: 661 KVERYGVKHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALA 715 Query: 812 QRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM---WLIESASRRQKWI 867 +L +I S L +GS+ N + IPD +KK+ E D ++IE++ +I Sbjct: 716 HENLNTPTVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQLDYMIENSP----YI 771 Query: 868 DQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLK 898 DQ Q L L+ D IY +AW LK Sbjct: 772 DQTQELILH-----DTNYDNIYCNILKAWQNKLK 800 >gi|94984359|ref|YP_603723.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Deinococcus geothermalis DSM 11300] gi|94554640|gb|ABF44554.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Deinococcus geothermalis DSM 11300] Length = 1010 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 149/612 (24%), Positives = 250/612 (40%), Gaps = 128/612 (20%) Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428 + VPDD+ GI A + A AK D + +R GA I G+ G S G + FL Sbjct: 212 VQAVPDDMGGIIDAARAVAESAKVGVEPRIDLSQMRPEGAPIKGSGGTSSGPVSFLMEIF 271 Query: 429 -------KVANDTAVAVN--------------QGGKRKGAVCAYLETWHIDVEEFL---D 464 +T+ +N QGG R+GA A + H DV +FL D Sbjct: 272 DNFLEWANRGGETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATIAIEHPDVLDFLTAKD 331 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF----EI 520 L + + T N + + + F + + +A W + D+ ++ GK + Sbjct: 332 LDREAAEGDIST--FNISILVSEQFWQALEGDALWHV-------DVQEVPGKYYLAPQSG 382 Query: 521 AYENY-----ERQAD--RGEIKVFRK--------------ISAVALWRKMLTMLFETGHP 559 Y+ + ER D RG + ++R + A LW ++ + TG P Sbjct: 383 PYDGHLPTLPERAEDGARG-VPLYRGAPRGRSQPADARPGVPAKWLWDQIAEHAWATGEP 441 Query: 560 WITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 + F D N S +++G + S+N C EI L C+LG+INL A+ N++F Sbjct: 442 GLIFVDRVNEHSALKNLGKRYEIRSTNPCGEIPLTVGEP----CDLGAINLAAYVQNSRF 497 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ + +RT VR LD+V+D+N +E + ++ R +GLG+MG AL L + Y S Sbjct: 498 DFAAFRADVRTCVRFLDDVLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKLGLRYDS 557 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 E M + A++ S L QERG Y ++ R+ Sbjct: 558 EAGRAAIAEIMTALREEAVAESERLGQERGVYPVYE--------------------RNAQ 597 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + + R RN + +APT T + + GVS I+P + + ++ + Sbjct: 598 KIPHSPR---------------RNVAVLTVAPTGTTSMLMGVSSGIEPVF-SPFIWRKIG 641 Query: 797 GDFTVVNSFLVNELKQRDL-------------WDEAMISDLKYHDGSIGNIERIPDDLKK 843 ++ + L EL + WD + + H GS+ + IP+ L++ Sbjct: 642 AEYRALLHPLFMELLNQYPPAANMDDGQGGWNWDRVTEAVSENH-GSVVGLAFIPEALQQ 700 Query: 844 IHATAFEIDPMWLIESASRRQKWID-----QAQSLNLYLDEPSGKKLDFI---YRQAWLM 895 + A +I P+ + Q+ D A SL+ ++ P+ + + Y +A+ Sbjct: 701 VFVCAHDIKPLDHVRMQGVVQQAFDAGGQHAANSLSKTINLPNSATVADVRAAYAEAYRT 760 Query: 896 GLKTTYYLRSRS 907 G K R S Sbjct: 761 GCKGITVYRDGS 772 >gi|319997477|gb|ADV91375.1| rr1 [Spodoptera frugiperda MNPV] Length = 838 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 151/634 (23%), Positives = 261/634 (41%), Gaps = 104/634 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L+++RD+ YD + +E Q FMRVA+ + + +K +E Y+ Sbjct: 250 LRHDRDYT---------YDLRLYENKNNLLERVQHMFMRVALTMYGDDIQK---VIESYH 297 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 ++S + S +GT QL++ ++ D+++ + +QE A + G + Sbjct: 298 MMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVD 357 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ N + L V N+ + K ++E WH +V+ Sbjct: 358 ------------LYMQNVS----VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKN 401 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F++ +N D + + + IPD+FM RV N WTL P+ + L YG +FE A Sbjct: 402 FIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQA 458 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVG 577 Y +E++ +I + A L + ++ + G+ + FKD N I Q Sbjct: 459 YVKFEKEHINAKI-----VKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFSIEDEQVKYN 513 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +V S+++ + +N ++ QFDY+ L + VR LD +I+ Sbjct: 514 IVFSASVAVDKCVNLETK-------------------QFDYNLLRRITKNVVRDLDAMIN 554 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + ++K + H I +G+ GF L LL + EA + E I + AI A Sbjct: 555 INMYPLDKFENKKHN---IAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEA 611 Query: 698 SVELAQ------ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 S ELA+ E G S++ Q ++ + N T W L + Sbjct: 612 SNELAEASKELNESGKKKSYRNEKITQQIYNV------------YTDNETLMWDWQSLHE 659 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +V+ G+++ ++ T I G + P LY ++ + LV L Sbjct: 660 KVERYGVKHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALA 714 Query: 812 QRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM---WLIESASRRQKWI 867 +L +I S L +GS+ N + IPD +KK+ E D ++IE++ +I Sbjct: 715 HENLNTPTVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQLDYMIENSP----YI 770 Query: 868 DQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLK 898 DQ Q L L+ D IY +AW LK Sbjct: 771 DQTQELILH-----DTNYDNIYCNILKAWQNKLK 799 >gi|189462576|ref|ZP_03011361.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136] gi|189430737|gb|EDU99721.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136] Length = 847 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 150/628 (23%), Positives = 267/628 (42%), Gaps = 105/628 (16%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLA 394 E + L F ++ S T + + LS+CF+ + D YG I +E L Sbjct: 73 ELFGLFDHFKYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGKADSYGAIIRIDEEQVQLM 132 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 191 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + + D FM+ +N +T Sbjct: 192 KHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAVENRTYT-------------- 233 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 ++F I D + +V ++I+A ALW+K++ +++ P + F D S P Sbjct: 234 -QQFPI---------DSNDPQVKKEINASALWKKIVHNAWKSAEPGVLFWDTILRESVPD 283 Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + S+N C EI L C L +INL ++ N FD++ + Sbjct: 284 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTPEAYFDFELFKKHV 339 Query: 626 RTAVRVLDNVIDINCHTIEKAK------------KSNHTH------------RAIGLGLM 661 A R++D++ID+ IEK K H R G+G+ Sbjct: 340 GLAQRIMDDIIDLELEKIEKIMEKIDSDPESEEVKGTERHLWEKIYRKSGLGRRTGVGIT 399 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L + + Y + EA E +++ + I+ A +SV +A+ERGA+ + + Sbjct: 400 AEGDMLAAMGLRYGTEEATEFSEKVHKTIAIEAYRSSVNMAKERGAFEIYDAA------- 452 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 EV + +NR EL + +K G RN C+ IAPT T + + + Sbjct: 453 --------REVNNPF-INRIKDAD-PELYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSG 502 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIG 832 I+P + +Y + ++ + V+ V+E D ++E ++ K+ +D Sbjct: 503 IEPVFMPVYKRRRKVNPNDANVHVDFVDETG--DAFEEYVVFHHKFLTWMQINGYDPDKH 560 Query: 833 NIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 + DDL AT+ ++D + ++ R QKW+D + S+ + L ++L + Sbjct: 561 YTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNSVDEELVNR 620 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915 +Y +AW G K R S V ST Sbjct: 621 LYVEAWRSGCKGCTVYRDGSRAGVLVST 648 >gi|257052366|ref|YP_003130199.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorhabdus utahensis DSM 12940] gi|256691129|gb|ACV11466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorhabdus utahensis DSM 12940] Length = 1039 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 116/466 (24%), Positives = 187/466 (40%), Gaps = 103/466 (22%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E+ A EF +L+ + FM ++PTL N+G QLS+CF+ + DD+ I +E A + + Sbjct: 142 EETATEFQDLMENLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDIHQTAKEAAQVFQ 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + +R G + T G + G I F++ + + QGG R+GA + Sbjct: 202 SGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVS 261 Query: 456 HIDVEEFL-----------DLRKNTGDDRRRT---------------------------- 476 H DV +F+ LR N DD T Sbjct: 262 HPDVIQFIHAKNKDVSLARTLRLNDPDDFTHTSFSDALEEARELIDDDGRVPEHLRNAVE 321 Query: 477 ---HDMNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYEN 524 + N + I D FM + + +T +P E +L+D++G Sbjct: 322 GHLSNFNISVGITDEFMDALQNDEEFTFTNPRTGDPHIVTAETKELYDMFGL-------- 373 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN------IRSPQQHVGV 578 + E+ I A LW ++ E G P + + + N + H Sbjct: 374 ----GEYVEVGEELSIPASELWDDIVEGAHENGEPGVIYLERANKEHSFDVEENSDH--R 427 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL----------------------------LAH 610 + ++N C E L EE CNLG INL + Sbjct: 428 ILATNPCGEQPL----EEYEACNLGHINLSTLAAEGAPDWRVWSERHADDYDDFEAAVEA 483 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + + D ++L I A R L+NV+ ++ +EK ++ R IGLG+MG L Sbjct: 484 YLDEAIDVEELEYRIEMATRFLENVVTMSDFPVEKIEEKVRDMRKIGLGIMGLAQLFIQL 543 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 + Y S E IA M+ I+ + AS ELA+ERG ++ ++ S + Sbjct: 544 GVKYGSDEGDAIAGHLMQKINHDSKWASHELAEERGVFNDWEDSKY 589 >gi|228471291|ref|ZP_04056097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Porphyromonas uenonis 60-3] gi|228306933|gb|EEK16031.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Porphyromonas uenonis 60-3] Length = 857 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 164/704 (23%), Positives = 290/704 (41%), Gaps = 119/704 (16%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326 + + FD Y A L Y F + L ++ +Y L + I + P+ R+A Sbjct: 1 MKQKTYSFDEAYQAT-LDY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56 Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PD 378 L E E +L+ F ++ S T + + LS+CF+ + PD Sbjct: 57 ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 GI +E L K GG+G+D + +R G+ + + S G++PF++ +++ V Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G+R GA+ + H D E F+D + G + N + I D FM+ V ++ Sbjct: 177 AQDGRR-GALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVED-- 229 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 KE+ Y + E K R I A LW K++ + + Sbjct: 230 -----------------KEYLQTYPVHS-----AEPKFTRTIQARQLWDKIIYNAWRSAE 267 Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613 P + F D S P + + S+N C EI L C L +INL ++ N Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVRNP 323 Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645 FD+D + A+R++D++ID+ I+ K Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K+ R G+G+ L + + Y S EA+ A+E + + A ++SVELA+ER Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ + F I +A+ +L ++E+KK G RN + Sbjct: 444 GAFDLYDTEREKDNPF----IQRIAKADPKL---------YEEMKK----FGRRNIAMLT 486 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFTVVNSFLVNELKQRDLWD 817 IAPT + + + S I+P + +Y + N+ D+T + ++ ++ Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETG---DTFEEYTVYH 543 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQA 870 ++ +K +G ++L+++ ATA ++D + ++ R Q+W+D + Sbjct: 544 HNFLTWMKI-NGYDPEKNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHS 602 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV 911 S+ + L + S + + +Y +AW G K T Y SRS + Sbjct: 603 ISVTINLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLI 646 >gi|303235869|ref|ZP_07322472.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella disiens FB035-09AN] gi|302483742|gb|EFL46734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella disiens FB035-09AN] Length = 865 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 168/698 (24%), Positives = 298/698 (42%), Gaps = 115/698 (16%) Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333 FD + A+ L+Y F + L ++ ++Y + + +I + P+ R+A +A E Sbjct: 9 FDEAFEAS-LRY---FNGDELAARVWVNKYAMKDSFGKIYEKSPEDMHWRIANEVARIEK 64 Query: 334 EKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFG 385 + + A E ++LL F ++ + + G H LS+CF+ + D YG I Sbjct: 65 KYKNPISAQEVFDLLDHFRYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGDADSYGAILR 124 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +E L K GG+G+D + +R G+ ++ + S G++PF++ +++ V Q G+R Sbjct: 125 IDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR- 183 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ + H D E F+D + G + N + I D FM+ + + P Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDSFMEAAVNDKEFVQQFP- 238 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 + H + KE ISA LW K++ +++ P I F D Sbjct: 239 -IDSAHPTFKKE----------------------ISAKKLWDKIVHNAWKSAEPGILFWD 275 Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616 S P + + S+N C EI L C L SINL ++ + F Sbjct: 276 TITRESLPDCYADLGFRTISTNPCGEIPLCPYDS----CRLLSINLYSYVKHPFTKEATF 331 Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652 D+D ++ A R++D+++D+ H EK K + Sbjct: 332 DFDLFKKHVQLAQRIMDDIVDLEMEKIDLIMEKVKDDPQNDEVKLAEYHLWEKIKDKSGK 391 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R G+G+ + + + Y + EA + E + ++ A +SV +AQERGA+S F Sbjct: 392 GRRTGVGITAEGDMIAAMGLRYGTEEATAFSVEVHKTLALCAYRSSVTMAQERGAFSIFD 451 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + F LL E A+ +D++ K G RN C+ IAPT T Sbjct: 452 AKREAENPF------LLRIKEAEPAL-------YDDMIK----YGRRNIACLTIAPTGTT 494 Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + + + I+P + +Y + ++ + T V+ V+E+ D ++E ++ K+ + Sbjct: 495 SLMTQTTSGIEPVFMPVYTRRRKVNPNDTGVHIDFVDEVG--DSFEEYIVYHKKFIEWMK 552 Query: 832 GN---------IERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 N E I + +K+ ATA ++D + ++ QKW+D + S+ + L Sbjct: 553 VNGLDTEKKYTQEEINELVKRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPN 612 Query: 880 PSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914 + L + +Y +AW G K T Y SRS + S Sbjct: 613 NVDEVLVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVS 650 >gi|332883039|gb|EGK03323.1| hypothetical protein HMPREF9456_01960 [Dysgonomonas mossii DSM 22836] Length = 847 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 163/703 (23%), Positives = 284/703 (40%), Gaps = 119/703 (16%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326 + + + FD Y A L Y F + L ++ ++Y L I + P+ R+A Sbjct: 1 MAQKVYTFDEAYRAA-LDY---FNGDELAAKVWVNKYALKDATGNIYEQSPEDMHWRLAN 56 Query: 327 GLALKETEKEKRAV---EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV--PD 378 + E+ K K + E Y+L F ++ S T + + LS+CF+ + Sbjct: 57 EIGRIES-KYKNGLTTQELYDLFDQFKYIVPQGSPMTGIGNDYQIASLSNCFVIGMEGSS 115 Query: 379 DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D YG I +E L K GG+G+D + +R G+ + + S G++PF++ +++ Sbjct: 116 DSYGAIIRVDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTRE 175 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V Q G+R GA+ + H D E F+D + G + N + I D FM+ V Sbjct: 176 VAQDGRR-GALMLSVSIKHPDSESFIDAKMIEG----KVTGANVSVRIDDAFMQAVVDGT 230 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 +T P D + A LW+K++ +++ Sbjct: 231 PYTQQYP------------------------IDSDNPTTVKDTDATELWKKIVHNAWKSA 266 Query: 558 HPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 P + F D S P + + S+N C EI L C L +INL ++ N Sbjct: 267 EPGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVVN 322 Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIE 644 FD++ + A R++D++ID+ H E Sbjct: 323 PFKEDAYFDFELFKKHVGLAQRIMDDIIDLETEKIDKILNKIEIDPENEEVKWPERHLWE 382 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 K +K R G+G+ + + + Y + EA A+E ++ A ASVELA+E Sbjct: 383 KIRKKTLQGRRTGVGITAEGDMIAAMGLRYGTEEATTFAEEVHRTLAVAAYRASVELAKE 442 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RGA+ F + R+ +NR + + +L K ++ G RN C+ Sbjct: 443 RGAFEIFD----------------IERERNNPFINRLAEVD-PKLYKDMEKYGRRNIACL 485 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +APT T + + + I+P + +Y + ++ + V V+E D W+E ++ Sbjct: 486 TVAPTGTTSLMTQSTSGIEPVFLPVYKRRRKVNPNDKEVRVDFVDE--NGDSWEEYVVFH 543 Query: 824 LKY-----HDGSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQ 871 K+ G +++ K+ AT+ ++D + ++ R QKW+D + Sbjct: 544 HKFVTWMESKGYPAAKRYTNEEIDKMIAESPYYKATSNDVDWLQKVKMQGRIQKWVDHSI 603 Query: 872 SLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRSATSV 911 S+ + L PS D + Y +AW G K R S V Sbjct: 604 SVTINL--PSDVSEDLVNQLYIEAWKSGCKGCTVYRDGSRAGV 644 >gi|15790595|ref|NP_280419.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1] gi|169236332|ref|YP_001689532.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium salinarum R1] gi|10581113|gb|AAG19899.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1] gi|167727398|emb|CAP14186.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium salinarum R1] Length = 1051 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 161/693 (23%), Positives = 273/693 (39%), Gaps = 129/693 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A EF +L++S FM ++PTL N+G QLS+CF+ + DD+ I +E A + + Sbjct: 141 EGVAAEFQDLMASLSFMPNSPTLMNAGDELQQLSACFVDSPDDDITDIHQTAKEAAEVFQ 200 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + +R G + T G + G + F++ + + QGG R+GA A + Sbjct: 201 SGGGMGYAFWQLRPYGDTVGSTGGIASGPLTFMETFDQMCETIAQGGARRGAQMAVMRVS 260 Query: 456 HIDVEEFL-----------DLRKNTGDDRRRTH--------------------------- 477 H DV EF+ L+ N DD T Sbjct: 261 HPDVVEFIHAKNKDVSLAQTLKLNDPDDYTYTEFSEALEEARDLIDEDGRVPEHLRNAVE 320 Query: 478 ----DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + N + + D FM+ + +T +P E IA E + R Sbjct: 321 GHLSNFNISVGVTDGFMEALEAGEEYTFTNP---------RTGEAHIATEETKEMYSRYG 371 Query: 534 IKVF------RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG-VVHSSN 583 + + + A LW +++ E G P + + + N ++H + ++N Sbjct: 372 LGHYVTPGEELTLPAEELWSRIVEGAHENGEPGVIYLERVNDEHSFDVEEHPDHRILATN 431 Query: 584 LCTEITLNSSSEETAVCNLGSINL--------------------------LAHFANNQFD 617 C E L EE CNLG INL ++ F + D Sbjct: 432 PCGEQPL----EEYEACNLGHINLSTLAAQDAPDWRVWSQTHDFDTLEAGVSRFLDEAMD 487 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 D I R L+NV+ ++ + + ++ R IGLG+MG L + Y S Sbjct: 488 TDAFQRRIEMGTRFLENVVTMSDFPVPEIEQKVSEMRKIGLGVMGLAQLYIQLGVKYGSE 547 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--PIDSIGLLAEVRDE 735 E EIA + M+ I+ + +AS ELA ERG++ WD F P + E Sbjct: 548 EGNEIASQLMQTINHDSKTASHELALERGSFDE-----WDNSKFAAPTEYADWFEHHTGE 602 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS-- 793 A + P +RN N IAPT T + + + +P Y Y K+ Sbjct: 603 DAADWADGYP------------IRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVS 650 Query: 794 -NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDLKKI 844 ++ GD +V + + + L+ D+ +A+ + + DG + + +PD + ++ Sbjct: 651 DDVQGDEMLVEFDDYFLRTLEDNDIDVQAVKEEAQTQMANNDFDG-VDGLTTVPDAIGEL 709 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTY 901 ++ + Q +D A S + ++ S + +D +YR + G K T Y Sbjct: 710 FVVTSDLSGKDHAAVQTACQNGVDSAISKTCNFPNDASVEDMDEVYRYIYDNGGKGVTVY 769 Query: 902 YLRSRS----ATSVEKSTLKGVDGKLNAVPVTD 930 +RS T + + G+D + A + D Sbjct: 770 RDGTRSKQVLTTRADNTEFSGLDEEEAAAAMVD 802 >gi|325066267|ref|ZP_08124940.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces oris K20] Length = 393 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 9/303 (2%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 Y F FE +LG Y Y L +G R + F RV M E+ A++ + Sbjct: 97 YAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLANGVERLALDLVD 154 Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + S F +TPT N G + + SCFL + D++ I + L+K GG+ Sbjct: 155 EMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALL 214 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FL Sbjct: 215 LSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFL 274 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + N LFSP +V ++ + + + E Sbjct: 275 DTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYGMPFADINVT-E 333 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y D G IK +KI+A ++ + + FE+G+P++ F+D N +P + G V SN Sbjct: 334 KYREMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVVMSN 390 Query: 584 LCT 586 LC+ Sbjct: 391 LCS 393 >gi|330720411|gb|EGG98732.1| Ribonucleotide reductase of class II (coenzyme B12-dependent) [gamma proteobacterium IMCC2047] Length = 715 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 157/662 (23%), Positives = 276/662 (41%), Gaps = 68/662 (10%) Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLL 346 +D + L I +Y L NG ++ A F RVA LA ET K+ + + L Sbjct: 13 KDIPLQDASLDIWDKKYRLKAKNGEAVDTDVDATFRRVARALADVETGKKNQEKWYEKFL 72 Query: 347 SSFH--FMCSTPTLFNSGTR-HPQLSSCFLTTVP----DDLYGIFGALQENAMLAKYSGG 399 + + + + N+G + H +S TV D + I E + K G Sbjct: 73 WALRKGVIPAGRIISNAGAKEHKPATSTINCTVSAVIHDSMTDILTKNLEAGLTLKAGCG 132 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G +++ +R GA++ G + G + F+ + + V+ G R+GA A + H DV Sbjct: 133 IGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDV 192 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----DLYG 515 EF+ ++ G R N + I D F++ V A W L P ++ DL G Sbjct: 193 FEFIRAKREDG----RLRQFNLSLLITDEFIQAVKDQADWQLAFPVTAKEVENDGIDLEG 248 Query: 516 KEF----EIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + E+Y D G + +V++ + A +W +++ ++ P D N Sbjct: 249 DDIIWRESPNSEDYVHN-DEGLVACRVYKTVKAQRVWDAIMSSTYDFAEPGFILIDKVNE 307 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLAST 624 + + ++N C E L C LGS+NL N +FD+D+ Sbjct: 308 MNNNWFCEQIRATNPCGEQPLPPYGS----CLLGSVNLTRFVVDPFTPNARFDWDEYRKV 363 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + R+LDNV++IN +E+ + R G+G +G S +L + Y ++E+ + Sbjct: 364 VSIFTRMLDNVVEINGLPLEQQRHEIQNKRRHGMGYLGLGSTTTMLGLKYGDEASLELTE 423 Query: 685 ESMEFISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 + ++ ++ELA+E+GA + L + D + +V ++ Sbjct: 424 RVTKEMAMVGWETALELAEEKGAAPIMDEMFEVTPCMLRKRPEMAKDGYKVGDQVAGKVL 483 Query: 738 MNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATI----ANICGVSQSIDPSYQ 787 + SR EL +++ G R ++ +IAPT TI AN S I+PS+ Sbjct: 484 HAKYSRYMQQVAQENPELVEKLAEKGARFTHHTSIAPTGTISLSLAN--NASNGIEPSFA 541 Query: 788 NLYVKSNM-SGDFT--VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y ++ + G T V+ F L R+L + ++ E + L + Sbjct: 542 HHYSRNVIREGRKTKEKVDVFSYELLAYREL----------VNPKAMPYSENPEEQLPEY 591 Query: 845 HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 +A +I P ++ + QKWID +++ N+ D P D IY A+ GLK Sbjct: 592 FISADDIKPKQHVDVQAASQKWIDSSISKTANVPTDFPYQDFKD-IYMYAYEQGLKGCTT 650 Query: 903 LR 904 R Sbjct: 651 FR 652 >gi|304310470|ref|YP_003810068.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma proteobacterium HdN1] gi|301796203|emb|CBL44409.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma proteobacterium HdN1] Length = 704 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 139/571 (24%), Positives = 246/571 (43%), Gaps = 66/571 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D + I E + K G+G +++ +R GA++ G K+ G + F+ + + T Sbjct: 96 TIHDTMNDILAKNFEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAKTSGPLSFMDIFDRT 155 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV +F+ +++ G R N + + + F+ V Sbjct: 156 CFTVSSAGGRRGAQMATFDVSHPDVLDFIRVKRENG----RLRQFNLSLLVSEKFIDAVR 211 Query: 495 QNAGWTLF------SPD-EVSDLHDLYGKEF-EIAYENYERQADRGEI--KVFRKISAVA 544 + W L SPD + +L D E+ E + D GE+ +V+RK++A Sbjct: 212 NDQQWALVFPIKTNSPDAQKLNLQDPEQVEWREWPSNDGYITNDCGEVACRVYRKVAARK 271 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W +++ ++ P D N + + ++N C E L C LGS Sbjct: 272 IWHVIMSSTYDFAEPGFILIDKVNQMNNNWFCENIRATNPCGEQPLPPYGS----CLLGS 327 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 INL +N QFD++K + R+LDNV+++N + R G+G Sbjct: 328 INLTRFISNPFSVDAQFDWEKFRRMVSVFSRLLDNVVEVNGLPLNHQAHEIQYKRRHGMG 387 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG------------- 706 +G SA+ +L I Y S E+VE ++ ++ ++ELA+E+G Sbjct: 388 FLGLGSAMTMLRIKYGSKESVEFTEQIAREMAMTGWKTALELAKEKGPAPIMEDEFEVTP 447 Query: 707 AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSN 762 + S + + G D I G + + M R + DEL K +G R ++ Sbjct: 448 SMLSKRPEMVADGYRVGDKIKGKVLHAKYSRYMQRIAEQDPALVDELAK----VGARYTH 503 Query: 763 CMAIAPTATIANICG--VSQSIDPSYQNLYVKS-----NMSGDFTVVNSFLVNELKQRDL 815 +IAPT TI+ G S I+P++ + Y+++ S + V SF +L Sbjct: 504 HSSIAPTGTISLSIGNNASNGIEPTFAHHYIRNVIKEGKKSKEKMDVFSF--------EL 555 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSL 873 + + K S E++PD + ++ P ++ + QKW+D ++++ Sbjct: 556 LAYRALVNPKAMPFSENPAEKLPD----YFTSTDDVSPEQHVDIQAAAQKWVDSSISKTI 611 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 N+ D S + IY A+ GLK R Sbjct: 612 NVPTD-ISYDRFKDIYLYAYDSGLKGCTTFR 641 >gi|146280505|ref|YP_001170658.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri A1501] gi|145568710|gb|ABP77816.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri A1501] Length = 745 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 137/569 (24%), Positives = 237/569 (41%), Gaps = 54/569 (9%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 ++ D + I G + E + K G+G +++ +R G+ + G + G + F+ + + Sbjct: 139 SITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSFVSGAGAHTSGPLSFMDIFDKM 198 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 199 CFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKREDG----RLRQFNLSLLITDEFMQTVE 254 Query: 495 QNAGWTLFSPD--------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + W L P +++D + +E+ + R K++ ++ A LW Sbjct: 255 ADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYIVRDDGLVACKIYGRVKARHLW 314 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ ++ P D N + + ++N C E L C LGSIN Sbjct: 315 DMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSIN 370 Query: 607 LLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L HF +FD+DK +R R+LDNV++IN +E+ + + R G+G Sbjct: 371 L-THFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEINGLPLEQQRHEIESKRRHGMGF 429 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--------- 711 +G S L LL + Y SPEA +E ++ ++EL++E+G Sbjct: 430 LGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALELSKEKGPAPLLSQNFEVTAE 489 Query: 712 ----KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + + G D I G + + M + + D L + + G R ++ +I Sbjct: 490 MLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAPD-LIEALAEQGARFTHHSSI 548 Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 APT TI AN S I+PS+ + Y ++ + E+ +L + Sbjct: 549 APTGTISLSLAN--NASNGIEPSFAHHYSRNLIRPGRKAKEKI---EVFSYELLAYRTLI 603 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEP 880 + + GS E++PD TA ++ P ++ + QKW+D +++ N+ D P Sbjct: 604 NARAKPGSDEPGEKLPD----YFITADDVSPTQHVDIQAAAQKWVDSSISKTANVPTDYP 659 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 D IYR AW GLK R A Sbjct: 660 FEAFKD-IYRYAWRQGLKGCTTFRFNPAA 687 >gi|145300302|ref|YP_001143143.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142853074|gb|ABO91395.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 715 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 154/628 (24%), Positives = 259/628 (41%), Gaps = 68/628 (10%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT-TV 376 + RVA LA +E E + F L + T H +S C ++ T+ Sbjct: 49 YQRVARALAEQEREPDAWYEPFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTI 108 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + I G + E + K G+G D++ +R GA + G + G + F+ + + Sbjct: 109 EDSMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCF 168 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+ G R+GA ++ H DV EF+ ++ G R N + I + F+K V ++ Sbjct: 169 TVSSAGGRRGAQMGTMDIRHPDVIEFIQAKREDG----RLRQFNLSLLITEDFVKAVKED 224 Query: 497 AGWTLFSPDEVSDL-HDLYGKE-----FEIAYENYERQADR--GEI--KVFRKISAVALW 546 A W+L P ++ D G + F + N E G++ KV++ + A LW Sbjct: 225 APWSLIFPYTAKEVEQDGIGLDDPEVVFWADWPNKEGVVINALGQVACKVYKTMPARKLW 284 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++T ++ P D N + + ++N C E L C LGS+N Sbjct: 285 NVIMTSTYDYAEPGFILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSVN 340 Query: 607 LLAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L F + FD+ + R+LDNV++IN + K ++ R G+G Sbjct: 341 -LTRFVRDPFTEQAAFDWQGFRKVVAIFTRMLDNVVEINQLPLAKQREEITAKRRHGMGF 399 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 +G S L +L I Y S +V ++ + ++ S+ LA+E+G + G Sbjct: 400 LGLGSTLTMLQIKYGSAASVAFTEQVSQELAMTGWQESLRLAKEKGVAPIMEQEFEVTGK 459 Query: 721 -------FPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIA 767 D I L +V+ ++ R SR L + +G R ++ +IA Sbjct: 460 MLRLHPEMAADGIKLGDKVKGKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIA 519 Query: 768 PTATI----ANICGVSQSIDPSYQNLYVKSNM-----SGDFTVVNSFLVNELKQRDLWDE 818 PT TI AN S I+PS+ + Y ++ + S + V SF + L R+L Sbjct: 520 PTGTISLSLAN--NASNGIEPSFAHHYSRNVIKPGKKSKESVDVYSFEL--LAYREL--- 572 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLY 876 + G++ E L TA +I P ++ + Q+WID +++ N+ Sbjct: 573 -------VNAGAMPYSEDDASRLPGYFITADDISPAQHVDIQAAAQRWIDSSISKTANVP 625 Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 D P + D IY A GLK R Sbjct: 626 TDFPFEQFKD-IYMYASDSGLKGCTTFR 652 >gi|224027035|ref|ZP_03645401.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM 18228] gi|224020271|gb|EEF78269.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM 18228] Length = 847 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 160/704 (22%), Positives = 297/704 (42%), Gaps = 113/704 (16%) Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326 + + +D Y A+ L+Y F + L ++ ++Y + + I + P+ R+A Sbjct: 1 MEKKTYSYDEAYNAS-LQY---FKGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56 Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--D 379 +A E + A E ++LL F ++ S T + + LS+CF+ + D Sbjct: 57 EVARIEAKYPNALSAQELFDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGLEGAAD 116 Query: 380 LYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 YG I +E L K GG+G+D + +R G+ + + S G++PF++ +++ V Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G+R GA+ + H D E F+D + G + N + + D FM+ + Sbjct: 177 AQDGRR-GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAVEGR- 230 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 +Y ++F I D V ++I+A ALW+K++ +++ Sbjct: 231 --------------MYTQQFPI---------DSDHPMVSKQINASALWKKIVHNAWKSAE 267 Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613 P + F D S P + + S+N C EI L C L +INL ++ N Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVINP 323 Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEK 645 +FD+D I A R++D++ID+ H EK Sbjct: 324 FTPEARFDFDLFKKHIALAQRIMDDIIDLELEKIERIMEKIDADPESEEVKGAERHLWEK 383 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + + R G+G+ L + + Y + EA E +++ + ++ A +SV +A+ER Sbjct: 384 IYRKSGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEQVHKTVALEAYRSSVNMAKER 443 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ + F + ++D L + + G RN C+ Sbjct: 444 GAFEIYDAEREKNNPF-------INRIKDADPA----------LYEDMVRYGRRNIACLT 486 Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 IAPT T + + + I+P + +Y+ + ++ + V+ V+E D ++E ++ Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFMPVYMRRRKVNPNDANVHVDFVDETG--DAFEEYVVFHH 544 Query: 825 KY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 K+ +D + + DDL AT+ ++D + ++ R QKW+D + S Sbjct: 545 KFLTWMEVNGYDPNKHYTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSIS 604 Query: 873 LNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + + L ++L + +Y +AW G K R S V ST Sbjct: 605 VTINLPNSVDEELVNRLYVEAWRSGCKGCTVYRDGSRAGVLIST 648 >gi|302347121|ref|YP_003815419.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella melaninogenica ATCC 25845] gi|302150496|gb|ADK96757.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella melaninogenica ATCC 25845] Length = 866 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 174/722 (24%), Positives = 305/722 (42%), Gaps = 121/722 (16%) Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333 FD + A+ L Y F + L ++ ++Y + + I + P+ R+A +A E Sbjct: 9 FDEAFQAS-LAY---FGGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIANEIARIEN 64 Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385 + + A E ++LL F ++ S T + + LS+CF+ + D YG I Sbjct: 65 KYKNPLTAQEVFDLLHHFKYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNADSYGAIMR 124 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +E L K GG+G+D T +R G+ ++ + S G++PF++ +++ V Q G+R Sbjct: 125 IDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR- 183 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ + H D E F+D + G + N + I D FM+ V ++ + P Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAVVEDKTYVQQFPT 239 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 S E V ++ISA LW K++ +++ P + F D Sbjct: 240 NSS------------------------EPSVTKEISAKELWEKIVHNAWKSAEPGVLFWD 275 Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616 S P + + S+N C EI L C L S+NL ++ + +F Sbjct: 276 TIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVIDPFTDHARF 331 Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652 D + + A R++D++ID+ H EK KK + Sbjct: 332 DMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKKKSCQ 391 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R G+G+ + + + Y + EA + + + ++ +A +SV +AQERGA+ + Sbjct: 392 GRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAFEIYD 451 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 ++ F I L E +L ++++KK G RN C+ IAPT T Sbjct: 452 AKREEKNPF----ILRLKEADGQL---------YEDMKK----YGRRNIACLTIAPTGTT 494 Query: 773 ANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--WDE-- 818 + + + I+P + +Y + +++ DF V +SF + R W E Sbjct: 495 SLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTWMEVN 554 Query: 819 AMISDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + KY I ++R P ATA ++D + + QKW+D + S+ + L Sbjct: 555 GIDTQKKYSQEEIDELVKRSP----YYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNL 610 Query: 878 DEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLKGVDGKLNAVPVTDPN 932 ++L + +Y +AW G K T Y SRS SV K + ++ V D N Sbjct: 611 PNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKDLN 670 Query: 933 SS 934 S+ Sbjct: 671 SA 672 >gi|326333208|ref|ZP_08199455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nocardioidaceae bacterium Broad-1] gi|325948852|gb|EGD40945.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nocardioidaceae bacterium Broad-1] Length = 976 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 142/593 (23%), Positives = 255/593 (43%), Gaps = 63/593 (10%) Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 LL + HF ++P FN GT PQ +S+CF+ +V D + I +E ++ K G G + Sbjct: 128 LLVNQHFAFNSPVWFNVGTESPQQVSACFILSVDDSMDSILNWYKEEGLIFKGGSGAGLN 187 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462 + +R + + G + G + F++ A+ +A + GG R+ A L+ H D+EEF Sbjct: 188 LSRIRSSKELLKSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEF 247 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEF 518 ++ + D R D A + DL K ++ QNA ++ DE + GK+F Sbjct: 248 VETKAREEDKIRALRD---AGFDMDLGGKDISSVQYQNANNSVRVSDEFMRAVE-EGKKF 303 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 + R GE V +I A L+RK+ +E P + + D N G Sbjct: 304 GL------RARTTGE--VIEEIDARELFRKISIAAWECADPGLQYDDTINDWHTNPETGR 355 Query: 579 VHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVI 636 + SN C+E ++L++SS CNL S+NLL ++ FD + +D I Sbjct: 356 ITGSNPCSEYMSLDNSS-----CNLASLNLLKFLKDDDTFDAVRFQQACEIVFTAMDISI 410 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 E ++ +R +G+G + L + + Y S +A ++ Sbjct: 411 CFADFPTEAIGETTRDYRQLGIGYANLGALLMAMGLGYDSEGGRTMAAAITSLMTGAGYK 470 Query: 697 ASVELAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 S ELA G Y+ + K + V I+ + D ++ +R+ Sbjct: 471 RSAELAGVVGPYAGYARNAEAHQRVMRKHQAANDAVRSINPV-------DRNIIDAATRV 523 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVV 802 W ++ + K G RN+ +APT TI + + I+P + + K + G +V Sbjct: 524 -WSDVVEIGKVNGFRNAQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIV 582 Query: 803 NSFL---VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------ID 852 N + + +L + EA+++ + H G++ P L++ H F+ + Sbjct: 583 NQVIPRALTKLGYQAEQIEAIVAYIAEH----GHVVDAP-GLRQEHYEVFDTAMGKRALQ 637 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 PM + + Q ++ A S + L E + + ++ +Y ++W +GLK T R Sbjct: 638 PMGHVRMMAATQPFLSGAISKTVNLPETATVEDIEQVYMESWKLGLKATAIYR 690 >gi|222095084|ref|YP_002529144.1| ribonucleoside-diphosphate reductase, alpha subunit, n-terminal region [Bacillus cereus Q1] gi|221239142|gb|ACM11852.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal region [Bacillus cereus Q1] Length = 346 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 44 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 101 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 102 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 161 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 162 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 221 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 222 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 281 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 282 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 338 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 339 TVKMSNLC 346 >gi|291515281|emb|CBK64491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alistipes shahii WAL 8301] Length = 850 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 151/635 (23%), Positives = 263/635 (41%), Gaps = 115/635 (18%) Query: 341 EFYNLLSSFHFMCSTP---TLFNSGTRHPQLSSCFLT--TVPDDLYG-IFGALQENAMLA 394 E + LL F ++ T + + LS+CF+ P D YG IF +E L Sbjct: 80 EVFALLDHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLM 139 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ L Sbjct: 140 KRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSLSI 198 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + +TG + N + I D FM+ Y Sbjct: 199 KHPDAERFIDAKVDTG----KVTGANVSIKIDDDFMRAALAGKK---------------Y 239 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 ++F I +N + + D I A LW K++ +++ P + F D S P Sbjct: 240 HQQFPIKSDNPKYEQD---------IDARKLWEKIIHNAWKSAEPGVLFWDTIIRESIPD 290 Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTI 625 + V S+N C EI L C L ++NLL++ A+ +F++DK + Sbjct: 291 CYADEGFVTVSTNPCGEIPLCPYDS----CRLLAMNLLSYVDNPFKADAKFNFDKFRDHV 346 Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661 A+ ++D++ID+ +E K ++ R GLG+ Sbjct: 347 YKAMHMMDDIIDLELEKVEQIIGKIAADPEDLDVRRVELELWKKIREMARKGRRTGLGIT 406 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L + Y + EA++ A E + ++ A ASV++A ERGA+ + + Sbjct: 407 AEGDMLAALGLRYGTQEAIDFAVEVQKCLALAAYGASVKMAAERGAFPVYDAA------- 459 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 EV + + P L + + +G RN + IAPT T + + + Sbjct: 460 --------KEVNNPMIARIREADP--ALYEEMTKVGRRNIAMLTIAPTGTTSLMSQTTSG 509 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P ++ +Y K + + V++ + E + + + E + YH + +E D Sbjct: 510 IEPVFRTVY-KRRRKINPSDVDTHVDYEDETGEKFQEYNV----YHHNFVKWLEASGYDT 564 Query: 842 KKI------------------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 K+ ATA +ID + ++ QKW+D + S+ + L + Sbjct: 565 SKLATISDAELNEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSE 624 Query: 884 KL-DFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915 L +YR AW G K T Y R +EK++ Sbjct: 625 ALVADVYRTAWECGCKGVTVYRDGCRDGVLLEKNS 659 >gi|229160403|ref|ZP_04288401.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus R309803] gi|228623127|gb|EEK79955.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus R309803] Length = 364 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|297584572|ref|YP_003700352.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacillus selenitireducens MLS10] gi|297143029|gb|ADH99786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacillus selenitireducens MLS10] Length = 855 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 111/421 (26%), Positives = 182/421 (43%), Gaps = 49/421 (11%) Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE------ 533 N + I FM V Q+ + L PD + + KE E + D E Sbjct: 369 NISVCITKEFMDAVEQDRDYELRFPD----VENYNEKEMEAYNREWHEYGDVREWEQLGF 424 Query: 534 -IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 I+ +RKI A LW + + P I F D N + G V ++N C E L Sbjct: 425 GIRTYRKIKARELWELINICATYSAEPGIFFIDNANEMTNASAYGQKVVATNPCGEQPLA 484 Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 S VCNL ++NL +A D++KL T+ T VR+ DNVID + +++ Sbjct: 485 PYS----VCNLAAVNLAEMADRTTKTVDFEKLKQTVATGVRMQDNVIDATPYFLQENTDQ 540 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 R +GLG+MG L Y S E+ D+ E I+ A SVE+A+E+G++ Sbjct: 541 AKGERRVGLGVMGLHDLLIHTETTYGSEAGNELVDQIFETIAVTAYRESVEIAKEKGSFP 600 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +GS ++ F +RD + ++L + ++ G+RNS+ + +APT Sbjct: 601 FLEGSNTEETAF----------LRDRFTQTGYMKKMPEDLLEDIRAYGIRNSHLLTVAPT 650 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + GVS ++P + Y +S G F V + ++ +D DE Sbjct: 651 GSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKAQIL-----QDYLDE----------- 694 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 + E D L + ++ E+ P + Q+W+D SL+ ++ P G +D + Sbjct: 695 ---HPEVSSDQLPEWFISSMELTPEAHADVQCVIQRWVD--SSLSKTVNAPKGYTVDQVK 749 Query: 890 R 890 R Sbjct: 750 R 750 Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%) Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLS--SCF-LTTV 376 R A GL+ ET E+R FY+ L + +F+ + L+ +G+ H ++ +C+ + + Sbjct: 136 RNARGLSDVETNPEQREASFERFYHELVNMNFVPAGRVLYGAGS-HTDVTYFNCYVMPYI 194 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D GI ++ + GG+G + + +R G NGKS G + +L Sbjct: 195 ADSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTH 254 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFL 463 V QGG R+GA L WH D+ EF+ Sbjct: 255 LVEQGGSRRGAQMIMLADWHPDILEFI 281 >gi|327478741|gb|AEA82051.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri DSM 4166] Length = 716 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 137/569 (24%), Positives = 237/569 (41%), Gaps = 54/569 (9%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 ++ D + I G + E + K G+G +++ +R G+ + G + G + F+ + + Sbjct: 110 SITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSFVSGAGAHTSGPLSFMDIFDKM 169 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA + H DV EF+ ++ G R N + I D FM+ V Sbjct: 170 CFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKREDG----RLRQFNLSLLITDEFMQTVE 225 Query: 495 QNAGWTLFSPD--------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + W L P +++D + +E+ + R K++ ++ A LW Sbjct: 226 ADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYIVRDDGLVACKIYGRVKARHLW 285 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ ++ P D N + + ++N C E L C LGSIN Sbjct: 286 DMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSIN 341 Query: 607 LLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L HF +FD+DK +R R+LDNV++IN +E+ + + R G+G Sbjct: 342 L-THFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEINGLPLEQQRHEIESKRRHGMGF 400 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--------- 711 +G S L LL + Y SPEA +E ++ ++EL++E+G Sbjct: 401 LGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALELSKEKGPAPLLSQNFEVTAE 460 Query: 712 ----KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + + G D I G + + M + + D L + + G R ++ +I Sbjct: 461 MLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAPD-LIEALAEQGARFTHHSSI 519 Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 APT TI AN S I+PS+ + Y ++ + E+ +L + Sbjct: 520 APTGTISLSLAN--NASNGIEPSFAHHYSRNLIRPGRKAKEKI---EVFSYELLAYRTLI 574 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEP 880 + + GS E++PD TA ++ P ++ + QKW+D +++ N+ D P Sbjct: 575 NARAKPGSDEPGEKLPD----YFITADDVSPTQHVDIQAAAQKWVDSSISKTANVPTDYP 630 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 D IYR AW GLK R A Sbjct: 631 FEAFKD-IYRYAWRQGLKGCTTFRFNPAA 658 >gi|313203094|ref|YP_004041751.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent [Paludibacter propionicigenes WB4] gi|312442410|gb|ADQ78766.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paludibacter propionicigenes WB4] Length = 851 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 144/631 (22%), Positives = 254/631 (40%), Gaps = 119/631 (18%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVP--DDLYG-IFGALQENAMLA 394 E + L F ++ S T + + LS+CF+ D YG I +E L Sbjct: 73 ELFELFRDFKYIVPQGSPMTGIGNDFQVASLSNCFVIGFDGDSDSYGAIIKIDEEQVQLM 132 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDGRR-GALMLSVSI 191 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + +G + N + + D FMK N + Y Sbjct: 192 KHPDSETFIDAKMESG----KVTGANISVKLHDDFMKAAINN---------------ETY 232 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 +++ + EN + + A A+W+K++ +++ P I F D S P Sbjct: 233 TQQYPVTSEN---------PWFTKNVDANAIWKKIVHNAWQSAEPGILFWDTITRESVPD 283 Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + + S+N C EI L C L +INL ++ N FD++ + Sbjct: 284 CYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYINNPFTPQASFDFELFHKHV 339 Query: 626 RTAVRVLDNVIDINCHTI------------------------EKAKKSNHTHRAIGLGLM 661 A R++D++ID+ I EK K R G+G Sbjct: 340 GLAQRIMDDIIDLEMEKIDKIIAKIESDPEDEEIKNTEFQLWEKIKTKTSQGRRTGVGTT 399 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L Y + EA + +++ + ++ A +SV +AQERGA+S + + + Sbjct: 400 AEGDMLAALGFRYGTEEATDFSEKVHKAVALAAYRSSVTMAQERGAFSVYDAKREENNPY 459 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 I L E +L ++++ K G RN C+ IAPT T + + + Sbjct: 460 ----IQRLREADPQL---------YEDMAK----YGRRNIACLTIAPTGTTSIMTQTTSG 502 Query: 782 IDPSYQNLYVK--------SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 ++P + +Y + N+ DF N D W+E ++ K+ N Sbjct: 503 VEPVFMPVYTRRRKVNPNDKNVRVDFIDENG---------DSWEEYVVFHHKFVTWMEAN 553 Query: 834 ------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 ++ I ATA ++D + ++ R QKW+D + S+ + L + Sbjct: 554 NYSTTKRYTKEEVDEIVAKSPYYKATANDVDWLKKVQMQGRIQKWVDHSISVTINLPADA 613 Query: 882 GKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911 ++L +Y +AW G K R S V Sbjct: 614 TEELVGKLYEEAWRCGCKGVTVYRDGSRAGV 644 >gi|293556604|ref|ZP_06675171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Enterococcus faecium E1039] gi|291601222|gb|EFF31507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Enterococcus faecium E1039] Length = 827 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 113/429 (26%), Positives = 188/429 (43%), Gaps = 47/429 (10%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 ++K+ + I A LW + + P I F D N + Q G V ++N C E L Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472 Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 AVCNL +INL + D++KLA +R +VR DNVID + EK ++ Sbjct: 473 P----YAVCNLAAINLANMVDKKTKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQQ 528 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 R +GLG+MG L Y S + + D+ E I+ A SVELA+E+G++ Sbjct: 529 AKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP 588 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G ++ A + + ++P + +++ + G+RNS+ + +APT Sbjct: 589 FLVGKTVEETT---------ALRQRFIESGYMKKMP-ESIRQAILKYGIRNSHLLTVAPT 638 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + GVS ++P + Y +S G F VNS +V+E ++ Sbjct: 639 GSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNSEIVSEYLEK---------------- 682 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLD 886 N E D+L +A E+ P + Q+W+D S++ ++ P G K++ Sbjct: 683 ---NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVD--SSISKTVNAPKGYQVKQVA 737 Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 IY + G K T Y SR + + TL+ D PV ++ +L S Sbjct: 738 AIYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVVNNQITLDSLESS 793 Query: 945 TSDTECEVC 953 ++ C +C Sbjct: 794 EAEEICPIC 802 Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352 +I R +IN +E P + +F ++A +A + + E EK+A EFY L+ + + Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160 Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + L+ +GT +C++ + D G+ QE + GG+G + + +R Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 A +HG NGKS G + +L + V QGG R+GA L WH D+ EF+ Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273 >gi|229057077|ref|ZP_04196469.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH603] gi|228720218|gb|EEL71797.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH603] Length = 364 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ IP F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIIPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|284992284|ref|YP_003410838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geodermatophilus obscurus DSM 43160] gi|284065529|gb|ADB76467.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geodermatophilus obscurus DSM 43160] Length = 951 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 144/596 (24%), Positives = 249/596 (41%), Gaps = 62/596 (10%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E +L +F ++P FN GT PQ +S+CF+ V D++ I +E ++ K G Sbjct: 131 ELTWMLMHQYFSFNSPVWFNVGTNAPQQVSACFILAVDDEMDSILNWYREEGLIFKGGSG 190 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458 G + + +R + + G + G + F++ A+ +A + GG R+ A L+ H D Sbjct: 191 AGLNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPD 249 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLY 514 +EEF++ + D R D A + DL K +T QNA ++ VSD Sbjct: 250 IEEFIETKAREEDKIRALRD---AGYDMDLGGKDITSVQYQNANNSV----RVSD----- 297 Query: 515 GKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 EF A E+ + R + V + A L+RK+ +E P I + D N Sbjct: 298 --EFMRAVEDGDEFGLRARLDGSVIETVDAKTLFRKVTRAAWECADPGIQYDDTINDWHT 355 Query: 573 QQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVR 630 G +++SN C+E ++L++SS CNL S+NL+ ++ FD + + Sbjct: 356 NPETGRINASNPCSEYMSLDNSS-----CNLASLNLMKFLEDDGTFDSRNFVKAVELVIT 410 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +D I + ++ +R +G+G + L Y S +A + Sbjct: 411 AMDISICFADFPTDPIGETTRAYRQLGIGYANLGALLMATGHAYDSRGGQTLAAAITSLM 470 Query: 691 SFHAISASVELAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAM 738 + A S ELA GAY F K + + + P+ + D+ + Sbjct: 471 TGTAYRRSAELAGIVGAYEGFARNADAHARVMRKHAAANDAIRPVGA--------DDADV 522 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMS 796 + + W E + G RN+ +APT TI + + I+P + + Y K Sbjct: 523 LKAATAQWQECLELGADFGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKYKKLVGG 582 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------ 850 G +VN + L+ DE + + ++Y G++ P L+ H F+ Sbjct: 583 GSMQIVNQTVPRALRSLGYQDEQIEAIVEYIS-EHGHVVDAP-SLRPEHYEVFDCAMGER 640 Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 I PM + + Q +I A S + + E + + ++ IY Q W +GLK R Sbjct: 641 AISPMGHVRMMAAVQPFISGAISKTVNMPETATVEDVENIYFQGWKLGLKALAIYR 696 >gi|47566240|ref|ZP_00237268.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus G9241] gi|217958928|ref|YP_002337476.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus cereus AH187] gi|228984527|ref|ZP_04144704.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155018|ref|ZP_04283132.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus ATCC 4342] gi|229195648|ref|ZP_04322414.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus m1293] gi|47556793|gb|EAL15124.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus G9241] gi|217063500|gb|ACJ77750.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus cereus AH187] gi|228587897|gb|EEK45949.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus m1293] gi|228628576|gb|EEK85289.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus ATCC 4342] gi|228775230|gb|EEM23619.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 364 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|254785736|ref|YP_003073165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Teredinibacter turnerae T7901] gi|237684341|gb|ACR11605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Teredinibacter turnerae T7901] Length = 719 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 141/629 (22%), Positives = 265/629 (42%), Gaps = 77/629 (12%) Query: 323 RVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLT--- 374 R + AL EK KRA EF L + + + + N+G + P S+ T Sbjct: 58 RKRVAKALSSVEKSKRAHWEKEFIWALDN-GAIPAGRIISNAGAQEYKPATSTINCTVSG 116 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T+ D ++GI E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 117 TINDSMHGILEKNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIFDKM 176 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV++F+ ++ G R+ N + I D F++ V Sbjct: 177 CFTVSSAGGRRGAQMATFDVHHPDVQDFIRAKREDGKLRQ----FNLSLLITDDFIRAVK 232 Query: 495 QNAGWTL----------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 ++ W L P +++D + + + + ++++ I A Sbjct: 233 EDTDWALSFPLSQRDMEHKPVDLNDSTQVVWRRVPAKDKYITNEEGLTACRIYKSIPAKR 292 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LW ++++ ++ P D N ++ + ++N C E L C LGS Sbjct: 293 LWNQIMSSTYDFAEPGFILIDRVNDQNNNWFCENIRATNPCGEQPL----PPYGSCLLGS 348 Query: 605 INLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL N +F+++K + R+LDNV++IN +E+ + R G+G Sbjct: 349 VNLTVFVEEPFTENARFNWEKYRKVVAIFTRMLDNVVEINGLALEQQRDEITRKRRHGMG 408 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-------AYSSFK 712 +G S L LL IPY S ++ ++ ++ + LA+E+G Y + Sbjct: 409 FLGLGSTLALLRIPYGSSASIAFTEQVSRELAITGWREGLSLAKEKGMAPALADEYDVTE 468 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWD--ELKKRVKTIGMRNSNCMAI 766 L + D + +V+ + +R S+L + +L + G R ++ +I Sbjct: 469 AMLRMRPAMAADGLKAGDKVKGSVLFSRYSNYMSKLAEEDPQLLADLAEHGCRFTHHSSI 528 Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----DLWDE 818 APT TI AN S I+PS+ + Y ++ ++ E K+ D++ Sbjct: 529 APTGTISLSLAN--NASNGIEPSFAHHYSRN------------IIREGKKSKEKVDVFSY 574 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 +++ D G P DL + +A + P ++ + QKW+D S++ ++ Sbjct: 575 ELLAYRHLIDAEAG-----PSDLPEYFVSADSVAPSQHVDVQAAAQKWVD--SSISKTIN 627 Query: 879 EPSG---KKLDFIYRQAWLMGLKTTYYLR 904 P+ + IY A+ GLK R Sbjct: 628 VPTNISYEAFKDIYLYAYDQGLKGCTTFR 656 >gi|331028061|ref|YP_004421775.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1] gi|301341524|gb|ADK73408.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1] Length = 586 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 101/410 (24%), Positives = 177/410 (43%), Gaps = 63/410 (15%) Query: 370 SCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 +CF++ T+ D GI + GG+G DW+ +R G I + S G I F+ Sbjct: 75 NCFVSQTIEDSTEGICDTFSRAFQTMRMGGGIGYDWSTLRPNGDMIVKLDSNSSGPISFM 134 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + ++ + G R+GA L H D+E F+ +++ D + N + + D Sbjct: 135 GIFSELCHCIASSGHRRGAQMGVLRIDHPDIEAFIRIKQ----DLTKLTGFNISIAVTDE 190 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+ GK F + + + ++++ VALW + Sbjct: 191 FMEAKAS-------------------GKPFTLRFNG----------RAYKQVDPVALWEE 221 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 ++ ++ P + F D N + + + ++N C E L + C LGS+NL+ Sbjct: 222 VMRSTWDFADPGVLFIDTINRMNNLYYCETIAATNPCGEQPLPPN----GACLLGSLNLV 277 Query: 609 AHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 + + FD+ + + I VR +DNV+D + +E+ K + R +GLG G Sbjct: 278 RYIKQDALGRRYFDWAQYRADIPHIVRAMDNVVDRAIYPLEEQKAEAISKRRMGLGFTGL 337 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 +A L Y SP +E + ++ ++ HA AS LA E+G++ F L+ Sbjct: 338 ANAGEALGFMYGSPGFIEFELQLLDELNHHAYMASSLLAAEKGSFPLFDADLF------- 390 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 L E +L DE++ +K G+RNS+ +IAPT TI+ Sbjct: 391 ----LAGEYAKQLD---------DEVRASIKKNGLRNSHLTSIAPTGTIS 427 >gi|52143986|ref|YP_082841.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal region [Bacillus cereus E33L] gi|51977455|gb|AAU19005.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal region [Bacillus cereus E33L] gi|324325468|gb|ADY20728.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar finitimus YBT-020] Length = 376 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 74 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 369 TVKMSNLC 376 >gi|257869921|ref|ZP_05649574.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2] gi|257804085|gb|EEV32907.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2] Length = 831 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 126/487 (25%), Positives = 216/487 (44%), Gaps = 55/487 (11%) Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY----ERQADRGEIK 535 N + + + FM V ++ + L PD + + + E++ + E +A ++K Sbjct: 362 NISVCLTEEFMDAVKKDDWYALRFPD-IDNYSEEEMAEYDAKWAEVGDVREWEAAGHKVK 420 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSS 594 +++I A LW + + P I F D N + G V ++N C E L Sbjct: 421 TYQRIRARELWNLITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLTPY- 479 Query: 595 EETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 AVCNL ++NL A+ A++Q D+ KL T++TAVR DNVID + +K ++ Sbjct: 480 ---AVCNLAAVNL-ANMADHQTGTVDFAKLRETVKTAVRFQDNVIDATPYFFDKNERQAK 535 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R +GLG+MG L Y S E ++ D+ E I+ A AS++LA+E+G++ Sbjct: 536 GERRVGLGIMGLADLLIYCEKTYGSAEGNQLVDQIFETIAITAYEASIDLAKEKGSFPFL 595 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 G DQ ++ L + D M ++P +++ V G+RNS+ + +APT + Sbjct: 596 IGKD-DQ-----ETQALREKFIDTGYM---KKMP-AHIREGVMQFGIRNSHLLTVAPTGS 645 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + GVS ++P Y Y +S G F +N+ +V E L H Sbjct: 646 TGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAAIVEEY-------------LANHP--- 689 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFI 888 E+ D L +A E+ P + Q+W+D S++ ++ P G ++ + Sbjct: 690 ---EQDKDQLPDFFISAMELSPEEHVGVQCAIQRWVD--SSISKTVNAPKGYSVSQVAKV 744 Query: 889 YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 Y + G K T Y SR + + TL+ +D ++N +P + S Sbjct: 745 YMDLYDGGAKGGTVYVDGSRDSQVL---TLEAIDNEINT--QVEPAEDQFTTQTNEPVIS 799 Query: 947 DTECEVC 953 C +C Sbjct: 800 GDICPIC 806 Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 + IE P + RVA G++ KE E+E +FY ++ + + + L+ +GT + Sbjct: 118 NEIEKPLELYFEQIARRVARGISDKELEQELFLEQFYQQIAEQNLIPAGRVLYGAGT-NS 176 Query: 367 QLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 Q++ +CF+ + D GI QE + GG+G + + +R +HG +G+S G Sbjct: 177 QVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKACVVHGVSGRSSG 236 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +L + V QGG R+GA + WH D+ F+ Sbjct: 237 AVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDILAFI 276 >gi|255282089|ref|ZP_05346644.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bryantella formatexigens DSM 14469] gi|255267408|gb|EET60613.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bryantella formatexigens DSM 14469] Length = 757 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 123/448 (27%), Positives = 204/448 (45%), Gaps = 72/448 (16%) Query: 364 RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 R S+C++ T P D++ IF ++ A Y GG G D + + GA IH ++ Sbjct: 69 RKVTYSNCYVITPPKDEIEDIFECAKKLARTYSYGGGCGIDISGLAPRGARIHNAAKETS 128 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+++ + + Q G+R GA+ +++ H DVEEF++L+ D + N + Sbjct: 129 GAVSFMELYSMVTALIGQNGRR-GALMISIDSSHPDVEEFINLKT----DLEKVTKANIS 183 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 I + FMK V +N + L EV+ GE ++ + + A Sbjct: 184 VRIHEDFMKAVKENGEYLLSFTREVT-----------------------GE-RIEKTVQA 219 Query: 543 VALWRKMLTMLFETGHPWITFKDPC---NIRSPQQ---HVGVVHSSNLCTEITLNSSSEE 596 L+ K+ ++ P F D N+ S + + GV N C E L + Sbjct: 220 KELFHKIALTNWDYAEPGALFWDRITGWNLLSNTKEFSYAGV----NPCAEEPLPAGGS- 274 Query: 597 TAVCNLGSINLLAHFAN------NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKK 648 C LGSINL + F FD + ++ +VR L+ V++ + H +++ ++ Sbjct: 275 ---CLLGSINL-SEFVQYPFTEAATFDMEGFRKCVQASVRALNEVLEEGLPLHPLQEQRE 330 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 S R IGLG+MG AL L + Y +AV + D+ ++ AI+ S ELA+E Sbjct: 331 SVAKWRQIGLGIMGLADALLKLGLTYGEQDAVAMCDKIGFAMADAAIATSAELAKE---- 386 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 QG FP + + E LA TS ++ ++ V+ G+RNS + IAP Sbjct: 387 ---------QGAFPACNAEEIMETPYFLA--NTS----EKTRELVRKYGLRNSQLLTIAP 431 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS 796 T T++ + G+S I+P Y N Y + S Sbjct: 432 TGTLSTMLGISGGIEPVYANSYQRKTES 459 >gi|89893068|ref|YP_516555.1| hypothetical protein DSY0322 [Desulfitobacterium hafniense Y51] gi|219666336|ref|YP_002456771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfitobacterium hafniense DCB-2] gi|89332516|dbj|BAE82111.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536596|gb|ACL18335.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfitobacterium hafniense DCB-2] Length = 1153 Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 40/277 (14%) Query: 600 CNLGSINL--LAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNLGSINL + N + D+++L R A R LDNVI+ N + + ++ +R Sbjct: 661 CNLGSINLKLMVTEKNGKVVVDWERLGQITRLATRFLDNVIEANTYPLPSIEEMVKGNRK 720 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MGF L LL YAS +AVE A++ M FI A S LA+ERG + +++GS+ Sbjct: 721 IGLGVMGFADMLILLQTSYASEDAVEYAEKVMNFIQTEARLESQRLAEERGTFPNYQGSI 780 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 +D GV P +RN+ IAPT TI+ I Sbjct: 781 YD-GVRP-----------------------------------LRNATLTTIAPTGTISMI 804 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 CG S ++P + Y K+ M G + + + L + ++ + G++ Sbjct: 805 CGASSGVEPLFAVAYTKTVMDGTPLIEVNPIFQSLAEDYGFNSPELMRKIAEKGTVLGFP 864 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +P+ ++++ TA EI+P W I + QK+ D A S Sbjct: 865 EVPNWVQEVFVTAQEIEPEWHIRIQAAFQKYTDNAVS 901 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 132/293 (45%), Gaps = 38/293 (12%) Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE-----TEKEKR--AVEFYNLLSSFHFM 352 IL RY NG E P+ RVA +A E T+KE + A FY +++ FM Sbjct: 23 ILEKRYLKQENGEVAESPEDMLYRVASIIAQVEETFGKTKKEVKELAKSFYEMMAKLEFM 82 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ +R + Sbjct: 83 PNSPTLMNAGRDLGQLSACFVLPVEDSMEEIFDAIKSAAIIHKSGGGTGFSFSRLRPKNS 142 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F+KV N AV QGG R+GA L H D+ EF+ + +D Sbjct: 143 TVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDIREFITCK----ED 198 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + + N + I + FMK V + + L P LY E Sbjct: 199 NKEITNFNISVGITEEFMKAVQEKRHYNLIDPHTKEADGQLYAPE--------------- 243 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 VF+ I A WR G P I F D N +P +G + ++N C Sbjct: 244 ---VFQLIVDHA-WR--------NGEPGIIFLDRLNRDNPTPQLGEIEATNPC 284 >gi|293377855|ref|ZP_06624037.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Enterococcus faecium PC4.1] gi|292643518|gb|EFF61646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Enterococcus faecium PC4.1] Length = 827 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 113/430 (26%), Positives = 190/430 (44%), Gaps = 49/430 (11%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 ++K+ + I A LW + + P I F D N + Q G V ++N C E L Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472 Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 AVCNL +INL A+ + + D++KLA +R +VR DNVID + EK ++ Sbjct: 473 P----YAVCNLAAINL-ANMVDKETKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQ 527 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R +GLG+MG L Y S + + D+ E I+ A SVELA+E+G++ Sbjct: 528 QAKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSF 587 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G ++ A + + ++P + +++ + G+RNS+ + +AP Sbjct: 588 PFLVGKTVEETT---------ALRQRFIESGYMKKMP-ESIRQAILKYGIRNSHLLTVAP 637 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T + + GVS ++P + Y +S G F VN+ +V+E ++ Sbjct: 638 TGSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK--------------- 682 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885 N E D+L +A E+ P + Q+W+D S++ ++ P G K++ Sbjct: 683 ----NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVD--SSISKTVNAPKGYQVKQV 736 Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 IY + G K T Y SR + + TL+ D PV + +L S Sbjct: 737 AAIYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVADNQITLDSLES 792 Query: 944 CTSDTECEVC 953 ++ C +C Sbjct: 793 SEAEEICPIC 802 Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352 +I R +IN +E P + +F ++A +A + + E EK+A EFY L+ + + Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160 Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + L+ +GT +C++ + D G+ QE + GG+G + + +R Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 A +HG NGKS G + +L + V QGG R+GA L WH D+ EF+ Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273 >gi|229095935|ref|ZP_04226911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-29] gi|229102051|ref|ZP_04232763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-28] gi|229114889|ref|ZP_04244302.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock1-3] gi|228668581|gb|EEL24010.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock1-3] gi|228681371|gb|EEL35536.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-28] gi|228687445|gb|EEL41347.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-29] Length = 364 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A + Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|325571485|ref|ZP_08146985.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus ATCC 12755] gi|325155961|gb|EGC68157.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus ATCC 12755] Length = 825 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 124/439 (28%), Positives = 194/439 (44%), Gaps = 57/439 (12%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 ++K +++I A LW + + P I F D N + G V ++N C E L Sbjct: 415 KVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLT 474 Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 AVCNL +INL A+ A+ Q D+ KL T++TAVR DNVID + +K ++ Sbjct: 475 PY----AVCNLAAINL-ANMADRQKGTVDFAKLKETVKTAVRFQDNVIDATPYFFDKNEQ 529 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R +GLG+MG L Y S E + D+ E ++ A AS+ELA+E+G++ Sbjct: 530 QAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKEKGSF 589 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G DQ ++ L + D M ++P + + V G+RNS+ + +AP Sbjct: 590 PFLIGKN-DQ-----ETQALRKKFVDTGYMK---KMP-AHIHEGVLRFGIRNSHLLTVAP 639 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T + + GVS ++P Y Y +S G F +N+ +V+E L D Sbjct: 640 TGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIVDEY----LMDHP--------- 686 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-- 886 ER L +A E+ P + Q+W+D S++ ++ P G K+ Sbjct: 687 ------ERTKAQLPAWFISAMELTPEEHVGVQCTIQRWVD--SSISKTVNAPKGYKVSQV 738 Query: 887 -FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA----VPVTDPNSSTHSLG 939 +YR + G K T Y SR + + TL+ V+ +L A +PV + S Sbjct: 739 AKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLPVVQVDEPVVSGE 795 Query: 940 IPSSCTSDT-----ECEVC 953 I C T C C Sbjct: 796 ICPICHEGTIEEIGGCSTC 814 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 10/161 (6%) Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH 365 S IE P F RVA G++ E+ ++R +E FY + + + + + L+ +GT + Sbjct: 114 SDIEKPLELFFEQVAHRVAKGISANESHDQERFLETFYQQIVAQNLIPAGRVLYGAGT-N 172 Query: 366 PQLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 Q++ +CF+ + D GI QE + GG+G + + +R + +HG +G+S Sbjct: 173 SQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSGRSS 232 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 G + +L + V QGG R+GA + WH D+ F+ Sbjct: 233 GAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFTFI 273 >gi|167833823|gb|ACA02699.1| RR-1 [Spodoptera frugiperda MNPV] Length = 850 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 151/634 (23%), Positives = 260/634 (41%), Gaps = 104/634 (16%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L+++RD+ YD + +E Q FMRVA+ + + +K +E Y+ Sbjct: 262 LRHDRDYT---------YDLRLYENKNNLLERVQHMFMRVALTMYGDDIQK---VIESYH 309 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 ++S + S +GT QL++ ++ D+++ + +QE A + G + Sbjct: 310 MMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVD 369 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ N + L V N+ + K ++E WH +V+ Sbjct: 370 ------------LYMQNVS----VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKN 413 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F++ +N D + + + IPD+FM RV N WTL P+ + L YG +FE A Sbjct: 414 FIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQA 470 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVG 577 Y +E++ +I + A L + ++ + G+ + FKD N I Q Sbjct: 471 YVKFEKEHINAKI-----VKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFSIEDEQVKYN 525 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +V S+++ + +N ++ QFDY+ L + VR LD +I+ Sbjct: 526 IVFSASVAVDKCVNLETK-------------------QFDYNLLRRITKNVVRDLDAMIN 566 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + ++K + H I +G+ GF L LL + EA + E I + AI A Sbjct: 567 INMYPLDKFENKKHN---IAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEA 623 Query: 698 SVELAQ------ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 S ELA+ E G S + Q ++ + N T W L + Sbjct: 624 SNELAEASKELNESGKKKSHRNEKITQQIYNV------------YTDNETLMWDWQSLHE 671 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 +V+ G+++ ++ T I G + P LY ++ + LV L Sbjct: 672 KVERYGVKHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALA 726 Query: 812 QRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM---WLIESASRRQKWI 867 +L +I S L +GS+ N + IPD +KK+ E D ++IE++ +I Sbjct: 727 HENLNTPTVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQLDYMIENSP----YI 782 Query: 868 DQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLK 898 DQ Q L L+ D IY +AW LK Sbjct: 783 DQTQELILH-----DTNYDNIYCNILKAWQNKLK 811 >gi|313125840|ref|YP_004036110.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halogeometricum borinquense DSM 11551] gi|312292205|gb|ADQ66665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halogeometricum borinquense DSM 11551] Length = 1044 Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 170/670 (25%), Positives = 275/670 (41%), Gaps = 120/670 (17%) Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 ++ T K+KR F +++ S FM ++PTL N+G QLS+CF+ + DD+ I +E Sbjct: 137 IRTTVKDKRET-FQDMMESLSFMPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKE 195 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A + + GG+G + +R G + T G + G I F++ + + QGG R+GA Sbjct: 196 AAEVFQSGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQM 255 Query: 450 AYLETWHIDVEEFL-----------DLRKNTGDD---------------------RRRTH 477 + H DV +F+ LR N DD R H Sbjct: 256 GVMRVSHPDVIQFIHAKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDDEGRVPKH 315 Query: 478 ----------DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 + N + I D FM+ + +N +F+ + H + EI YE + Sbjct: 316 LRNAVEGHLSNFNISVGITDDFMEAL-ENGEEFVFTNPRTEEPHIATPETKEI-YEMF-G 372 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH------- 580 + E+ + A LW +M+ +E G P + + + N +QH V Sbjct: 373 LGEHVEVGEVLSVPAEKLWDQMVDGAYENGEPGVIYLERVN----KQHSFDVEKHPEHRI 428 Query: 581 -SSNLCTEITLNSSSEETAVCNLGSINL--LAHF---------ANNQFDYDKLAST---- 624 ++N C E L EE CNLG INL LA A N DYD + Sbjct: 429 LATNPCGEQPL----EEYEACNLGHINLSTLADLDAPDWRVWQAENGDDYDSIEDAVDAF 484 Query: 625 -------------IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 I R L+NV+ ++ +EK ++ R IGLG+MG L Sbjct: 485 LEEAIDWEEFDHRIDNGTRFLENVVTMSDFPVEKIEEKVRAMRKIGLGVMGLAQLYIQLG 544 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 I Y S E+A + M I+ + AS ELA+ERG + WD F + E Sbjct: 545 IRYGSDSGNEVARQLMTHINHQSKWASHELAEERGTFED-----WDDSKFADPT-----E 594 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R+ + + L DE + +RN N IAPT T + + + +P Y Y Sbjct: 595 YREWFEHH--TGLDADEWEDGFP---IRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYY 649 Query: 792 KS---NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDD 840 K+ ++ GD +V + + + L+ D+ +A+ + + DG G +E +P+ Sbjct: 650 KNVSDDVQGDEMLVEFDDYFLRVLEANDIDVDAVKEEAQEQMANNEFDGVEG-LETVPNA 708 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK- 898 + ++ ++ QK +D A S + + S + +D +YR + G K Sbjct: 709 IGELFVVTSDLSGKDHAAVQCACQKGVDSAISKTCNFPNSASKEDMDEVYRYIYNNGGKG 768 Query: 899 -TTYYLRSRS 907 T Y +RS Sbjct: 769 VTVYRDGTRS 778 >gi|315606269|ref|ZP_07881285.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574] gi|315251960|gb|EFU31933.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574] Length = 855 Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 166/714 (23%), Positives = 298/714 (41%), Gaps = 113/714 (15%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK- 337 A LKY F + L ++ ++Y + + I + P+ R+A +A E + Sbjct: 13 FAASLKY---FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMHRRIAGEIARIERKYANP 69 Query: 338 -RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQEN 390 E + LL F ++ + + G H LS+CF+ + D YG I +E Sbjct: 70 LSEEEIFGLLDHFRYIVPAGSPMTGIGNSHQVASLSNCFVIGLDGDADSYGAIMRIDEEQ 129 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L K GG+G+D + +R G+ ++ + S G++PF++ +++ V Q G R+GA+ Sbjct: 130 VQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGALML 188 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 + H D E F+D + G + N + + D FM+ N Sbjct: 189 SVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAIDNRP------------ 232 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 Y ++F + + KV ++ISA ALW K++ +++ P + F D Sbjct: 233 ---YVQQFPVTGD---------APKVKKEISAKALWEKIVHNAWKSAEPGVLFWDTILRE 280 Query: 571 S-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKL 621 S P + + S+N C EI L C L SINL ++ + F+ DK Sbjct: 281 SIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLISINLYSYVEHPFTPDAHFNMDKF 336 Query: 622 ASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIG 657 + A R++D+++D+ H EK K + R G Sbjct: 337 KQHAQLAQRLMDDIVDLEMEKIELIMEKIKADPQSEEVKGAEYHLWEKIKHKSSLGRRTG 396 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G+ L + + Y + EA + + E + ++ +A ++SV++A+ERGA+ F + Sbjct: 397 VGITAEGDMLAAMGLRYGTQEATDFSVEVHKALALNAYASSVQMAKERGAFEIFDAKREE 456 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 F I L + +L +D++ K G RN C+ IAPT T + + Sbjct: 457 HNPF----ILRLKDADPQL---------YDDMVK----YGRRNIACLTIAPTGTTSLMTQ 499 Query: 778 VSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--- 833 + I+P + +Y + ++ + T V+ V+E+ D ++E ++ K+ N Sbjct: 500 TTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHRKFLTWMQANGLD 557 Query: 834 ---------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 I+ + ATA ++D + ++ QKW+D + S+ + L + Sbjct: 558 TEKRYTQEEIDALVSRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEA 617 Query: 885 L-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PVTDPNSSTH 936 L + +Y +AW G K R S + V S K K +V PV + H Sbjct: 618 LVNRLYVEAWKSGCKGCTIYRDGSRSGVMISVSKKDKKKETSVAPVAEAVPCKH 671 >gi|325297273|ref|YP_004257190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides salanitronis DSM 18170] gi|324316826|gb|ADY34717.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides salanitronis DSM 18170] Length = 869 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 156/650 (24%), Positives = 266/650 (40%), Gaps = 107/650 (16%) Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSC 371 P+ R+A +A E + A E + L F ++ S T + + LS+C Sbjct: 69 PEDMHWRIANEVARIEAKYPNGLSAQELFGLFDHFKYIIPQGSPMTGIGNDYQIASLSNC 128 Query: 372 FLTTVPD--DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 F+ + D YG I +E L K GG+G+D + +R G+ + + S G++PF+ Sbjct: 129 FVIGLDGSADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 188 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + +++ V Q G+R GA+ + H D E F+D + G + N + + D Sbjct: 189 ERYSNSTREVAQDGRR-GALMMTVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDE 243 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+ +N + P + H + KE I A ALW+K Sbjct: 244 FMEAAVENRPYVQQFP--IGSPHPMVKKE----------------------IDASALWKK 279 Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604 ++ +++ P + F D S P + + S+N C EI L C L + Sbjct: 280 IVHNAWKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 335 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------------ 647 INL ++ N FD+D + A R++D++ID+ IEK Sbjct: 336 INLYSYVVNPFTPEAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIMEKIDSDPESEEV 395 Query: 648 KSNHTH------------RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 K H R G+G+ L L + Y + EA E A+ + I+ A Sbjct: 396 KGTERHLWEKIYRKSGMGRRTGVGITAEGDMLAALGLRYGTEEATEFAERVQKTIALEAY 455 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +SV +A+ERGA+ + F + L E L ++E+KK Sbjct: 456 RSSVVMAKERGAFEIYDTEREKDNPF----VNRLREADPGL---------YEEMKK---- 498 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814 G RN C+ IAPT T + + + I+P + +Y + ++ + V V+E D Sbjct: 499 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDENVRIDFVDETG--D 556 Query: 815 LWDEAMISDLKY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASR 862 ++E ++ K+ +D + DDL AT+ ++D + ++ R Sbjct: 557 AFEEYLVFHHKFLAWMKVNGYDPDKHYTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGR 616 Query: 863 RQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911 QKW+D + S+ + L ++L + +Y +AW G K R S V Sbjct: 617 IQKWVDHSISVTINLPNNVDEELVNRLYVEAWRSGCKGCTVYRDGSRAGV 666 >gi|271968371|ref|YP_003342567.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270511546|gb|ACZ89824.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 945 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 150/592 (25%), Positives = 247/592 (41%), Gaps = 54/592 (9%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E + L + F ++P FN GT PQ +S+CF+ V D + I +E ++ K G Sbjct: 126 ELKHALVNQVFSFNSPVWFNVGTASPQQVSACFILAVDDQMESILDWYKEEGVIFKGGSG 185 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458 G + + +R + + G + G + F++ A+ +A + GG R+ A L+ H D Sbjct: 186 SGVNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPD 244 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLY 514 +EEF++ + D R D A + DL K + QNA ++ VSD Sbjct: 245 IEEFIETKAREEDKVRALRD---AGFDMDLGGKDIVSVQYQNANNSV----RVSD----- 292 Query: 515 GKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 EF A E E R + +V K+ A L+RKM T +E P + + D N Sbjct: 293 --EFMRAVEKGEEFGLRARLTGEVIEKVDAGRLFRKMATAAWECADPGVQYDDTINDWHT 350 Query: 573 QQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVR 630 G + +SN C+E + L++SS CNL SINL+ +N FD + + Sbjct: 351 SPETGRITASNPCSEYLHLDNSS-----CNLASINLMKFLKDDNSFDIESFVKITELIIT 405 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +D I EK ++ +R +G+G + L Y S IA + Sbjct: 406 AMDVSITFADFPTEKIDQTTRAYRQLGIGYANLGALLMATGHAYDSEGGRAIAGAVTSLM 465 Query: 691 SFHAISASVELAQERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + + S ELA G Y + + + + D + L E D+ SR Sbjct: 466 TGASYRRSAELAAVVGPYDGYARNADAHKRVMRKHAAANDDLRTL-EGMDKAIHAEASR- 523 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVV 802 W E K + G RN+ +APT TI + + I+P + K + G +V Sbjct: 524 QWTECLKLGERNGYRNAQASLLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIV 583 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD--DLKKIHATAFE-------IDP 853 N + L+Q +E + + ++Y I + + D LK H F+ I P Sbjct: 584 NQTIPRALRQLGYPEEQVEAIVEY----IASNSHVVDAPGLKPEHYEVFDCAMGERAIAP 639 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 M + + Q ++ A S + L E + + ++ +Y + W +GLK R Sbjct: 640 MGHVRMMAAAQPFLSGAISKTVNLPEAATVEDIEQVYMEGWKLGLKALAVYR 691 >gi|229172090|ref|ZP_04299655.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus MM3] gi|228611433|gb|EEK68690.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus MM3] Length = 364 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKH 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|229029123|ref|ZP_04185220.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH1271] gi|228732181|gb|EEL83066.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH1271] Length = 364 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKH 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|218663033|ref|ZP_03518963.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli IE4771] Length = 427 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 121/451 (26%), Positives = 202/451 (44%), Gaps = 74/451 (16%) Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 +PD+ + N LFSP +V ++ + E + + E AD K +KI+A Sbjct: 5 VPDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARISK--KKINARE 62 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596 ++ + + FE+G+P+I F+D N +P G + SNLC+EI S + E Sbjct: 63 FFQVLAEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVSEASEYDDDLSYK 120 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651 CNLGS+N+ A A + D+ K TI T++R L V D++ ++ +K N Sbjct: 121 HLGKDISCNLGSLNIAA--AMDSADFGK---TIETSIRALTAVSDMSHIASVPSIEKGND 175 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710 AIGLG M L I Y S E V+ + +++HAI AS LA ERG ++ Sbjct: 176 ESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKG 235 Query: 711 FKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 F+ S + G + P + + + D+ ++ ++ W LK V T G+ N Sbjct: 236 FENSKYASGDYFDKYTEQEWKP--ATEKVQALFDKSGIHIPTQDDWASLKTAVMTSGLYN 293 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 N A+ PT +I+ I + SI P +V++++ R Sbjct: 294 QNLQAVPPTGSISYINHSTSSIHP---------------------IVSKIEIR------- 325 Query: 821 ISDLKYHDGSIGNIER----IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +G IG + + +D + A+EI +I++ + + +DQ SL L+ Sbjct: 326 ------KEGKIGRVYYPAPFMTNDNLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLF 379 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 D + + ++ AW G+KT YY+R R Sbjct: 380 FRDTATTRDINKAQIYAWKKGIKTIYYIRLR 410 >gi|331082220|ref|ZP_08331347.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403014|gb|EGG82579.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium 6_1_63FAA] Length = 755 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 142/550 (25%), Positives = 245/550 (44%), Gaps = 84/550 (15%) Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 S+C++ P D++ IF ++ A Y GG G D + + GA I+ ++ G + F Sbjct: 74 SNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKINNAAKETSGAVSF 133 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +++ + + Q G+R GA+ ++ H DV EF++L+ D + + N + I + Sbjct: 134 MELYSLVTSLIGQNGRR-GALMISIDCSHPDVPEFIELKT----DLEKVNTANISVRIHE 188 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FM+ V +N + L +Y R+ + G++ + R ++A L+ Sbjct: 189 DFMEAVKKNEEYCL----------------------HYTRE-ETGQV-IERMVNARELFH 224 Query: 548 KMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 ++ ++ P F D N+ S + N C E L + C LGS Sbjct: 225 RITETNWDYAEPGALFWDRITGWNLLSNTKEFSYA-GVNPCAEEPLPAGGS----CLLGS 279 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIG 657 INL A N FD+++ ++ +VR L+ V++ + H + + ++S R IG Sbjct: 280 INLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQRESVSQWRQIG 339 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG AL L + Y +AV + D ++ AI+AS LA+E GA Sbjct: 340 LGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELGA---------- 389 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 FP + + E LA N T + K+ V+ G+RNS + IAPT T++ + G Sbjct: 390 ---FPKCKVEEIMETPYFLA-NTT-----EGTKELVRKYGLRNSQLLTIAPTGTLSTMLG 440 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 +S I+P Y N Y + S V + ++ +D +E +SD + + Sbjct: 441 ISGGIEPIYANYYERKTESLHGEDVYYKVYTKI-VKDFMEEHKVSDDRL----------L 489 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWL 894 PD TA +D I+ S Q+ ID S++ ++ PSG ++ + +Y A+ Sbjct: 490 PD----YFVTAMTLDYHQRIDMQSIWQRHID--ASISSTVNVPSGFTVEETENLYLYAFE 543 Query: 895 MGLKTTYYLR 904 GLK R Sbjct: 544 QGLKGITIFR 553 >gi|260588503|ref|ZP_05854416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Blautia hansenii DSM 20583] gi|260540978|gb|EEX21547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Blautia hansenii DSM 20583] Length = 760 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 142/550 (25%), Positives = 245/550 (44%), Gaps = 84/550 (15%) Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 S+C++ P D++ IF ++ A Y GG G D + + GA I+ ++ G + F Sbjct: 79 SNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKINNAAKETSGAVSF 138 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +++ + + Q G+R GA+ ++ H DV EF++L+ D + + N + I + Sbjct: 139 MELYSLVTSLIGQNGRR-GALMISIDCSHPDVPEFIELKT----DLEKVNTANISVRIHE 193 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 FM+ V +N + L +Y R+ + G++ + R ++A L+ Sbjct: 194 DFMEAVKKNEEYCL----------------------HYTRE-ETGQV-IERMVNARELFH 229 Query: 548 KMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 ++ ++ P F D N+ S + N C E L + C LGS Sbjct: 230 RITETNWDYAEPGALFWDRITGWNLLSNTKEFSYA-GVNPCAEEPLPAGGS----CLLGS 284 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIG 657 INL A N FD+++ ++ +VR L+ V++ + H + + ++S R IG Sbjct: 285 INLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQRESVSQWRQIG 344 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG AL L + Y +AV + D ++ AI+AS LA+E GA Sbjct: 345 LGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELGA---------- 394 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 FP + + E LA N T + K+ V+ G+RNS + IAPT T++ + G Sbjct: 395 ---FPKCKVEEIMETPYFLA-NTT-----EGTKELVRKYGLRNSQLLTIAPTGTLSTMLG 445 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 +S I+P Y N Y + S V + ++ +D +E +SD + + Sbjct: 446 ISGGIEPIYANYYERKTESLHGEDVYYKVYTKI-VKDFMEEHKVSDDRL----------L 494 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWL 894 PD TA +D I+ S Q+ ID S++ ++ PSG ++ + +Y A+ Sbjct: 495 PD----YFVTAMTLDYHQRIDMQSIWQRHID--ASISSTVNVPSGFTVEETENLYLYAFE 548 Query: 895 MGLKTTYYLR 904 GLK R Sbjct: 549 QGLKGITIFR 558 >gi|328956633|ref|YP_004374019.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] gi|328672957|gb|AEB29003.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] Length = 849 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 119/440 (27%), Positives = 193/440 (43%), Gaps = 68/440 (15%) Query: 489 FMKRVTQNAGWTL-------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 FM+ V + A + L +SP+E+ + + + + ++ ++E + +R I Sbjct: 379 FMEAVEKGADYPLRFPAVETYSPEEMEEYNAHWSEIGDV--RDWESSGHG--VHTYRTIP 434 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + P I F D N + G V ++N C E L S VC Sbjct: 435 ARELWKLITICATYAAEPGIFFIDNANQMTNASAYGQKVVATNPCGEQPLAPYS----VC 490 Query: 601 NLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 NL ++NL +A+ + ++DKL T++ VR+ DNVID + + + +K R +GL Sbjct: 491 NLAAVNLAEMANKKSGTINFDKLKQTVQVGVRMQDNVIDATPYFLAENEKQALGERRVGL 550 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+MG L Y S E ++ D+ E I+ A AS+ELA+ERG+ Sbjct: 551 GIMGLADLLIYCGAEYGSQEGNQLVDKIFEVIAVSAYEASIELAKERGS----------- 599 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-------GMRNSNCMAIAPTAT 771 FP L+ + E R L +KK K I G+RNS+ + +APT + Sbjct: 600 --FPF----LIGKTEAETTKLREKFLQSGYMKKMPKHIHEGIMRYGIRNSHLLTVAPTGS 653 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + GVS ++P Y Y +S G F V + +V E L +H Sbjct: 654 TGTMVGVSTGLEPYYSFSYFRSGRLGKFIEVKADIVQEY-------------LDHHP--- 697 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFI 888 E P+ L K +A + P ++ Q+WID S++ ++ P G +++ I Sbjct: 698 ---ETDPERLPKQFVSAMSLKPEAHVDVQCTIQRWID--SSISKTVNAPRGYTVEQVQTI 752 Query: 889 YRQAWLMGLK--TTYYLRSR 906 Y + + G K T Y SR Sbjct: 753 YERLYKGGAKGGTVYVDGSR 772 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 10/160 (6%) Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGTRH 365 IE P F R A GLA E+ EKR V FY L S +F+ + L+ +G++ Sbjct: 123 IEKPLEIFYEQIAKRNATGLAAIESTPEKRKVAYTAFYEELKSLNFVPAGRVLYGAGSKT 182 Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +C++ VPD GI ++ + GG+G + + +R G NGKS G Sbjct: 183 DVTYFNCYVMPFVPDSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSG 242 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +L V QGG R+GA L WH D+ EF+ Sbjct: 243 AVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFI 282 >gi|239909099|ref|YP_002955841.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1] gi|239798966|dbj|BAH77955.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1] Length = 1096 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 157/312 (50%), Gaps = 42/312 (13%) Query: 599 VCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNLGSINL + A + D+ LA T+ AVR LDNVID + + +++ + +R Sbjct: 647 ACNLGSINLSVFYDPSAPDGIDWAGLAETVHLAVRFLDNVIDASRYPLDQITEMVRANRK 706 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MGF L+LL IPY S EA+ +A++ ME + A SAS LA ERGA+ ++ S+ Sbjct: 707 IGLGVMGFADLLYLLRIPYDSTEALTLAEKLMETVQAEARSASKTLAAERGAFPAYPESI 766 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAPTATIAN 774 + + + +G RN+ IAPT T++ Sbjct: 767 YGK-----------------------------------RNLGPYRNATTTTIAPTGTLSI 791 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S I+P + + + M G+ V N V L++ +A++ ++ GSI + Sbjct: 792 IAGCSSGIEPLFALSFARHVMDGEKLVEANPHFVTALREAGAHSDALMEEVT-RKGSIAH 850 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQA 892 I +P+ L+++ TA +I+P+W ++ + QK+ D A S + L + K ++ IY A Sbjct: 851 IGLLPEALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNSATKEEIREIYWLA 910 Query: 893 WLMGLKTTYYLR 904 + +G K R Sbjct: 911 YELGCKGVTVYR 922 Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 39/297 (13%) Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSF 349 + +L RY G+ E Q F RVA +A +E + E A +FY+L+ Sbjct: 1 MVVLSKRYLKKSPEGAPEEDVQGLFWRVAGAIASEEAKYAASPWQPEALARKFYDLMVGM 60 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N+GT QL++CF+ V D + IF A++ A++ K GG G ++ +R Sbjct: 61 RFLPNSPTLMNAGTPLGQLAACFVLPVGDSMDEIFDAVKFAALIHKSGGGTGFSFSRLRP 120 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 + + T G + G + F+++ N V QGG R+GA L H D+ EF+ ++ Sbjct: 121 KKSRVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFIACKERE 180 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G+ + N + + + FM+ V + + L P + S Sbjct: 181 GE----LTNFNISVALTERFMQAVEKGEDYDLIDPRDGS--------------------- 215 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 RG +SA ++ ++ +E+G P I F D N +P +G + S+N C Sbjct: 216 KRG------SLSAPEVFALLVRKAWESGDPGIVFLDRINRDNPTPALGAIESTNPCV 266 >gi|282858151|ref|ZP_06267346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyramidobacter piscolens W5455] gi|282584073|gb|EFB89446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyramidobacter piscolens W5455] Length = 894 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 142/611 (23%), Positives = 245/611 (40%), Gaps = 115/611 (18%) Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-G 416 L++ T + QL +CF+ +PD + GIF +++ A+++KY GG+G ++ +R GA I G Sbjct: 138 LYDGKTDNQQLFACFVIDIPDSIEGIFDSVRAAAVISKYGGGVGGNFGRLRERGADIKGG 197 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 T GK+ G + F++ N V QGG+R+ A+ L H D+E+F+D + G + Sbjct: 198 TGGKASGPVSFMETWNTMGCVVVQGGRRRAALMGMLPDDHPDIEQFMDAKTEEG----KL 253 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 N + + D + + + L S R KV Sbjct: 254 SYFNISVCVSDELVGAAREKRPFALRS---------------------------RANGKV 286 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSS 594 R +S LW K+ + G P + F D N + + G + S+N C E L + + Sbjct: 287 VRTVSGDELWNKLCQNAWRRGDPGVFFIDRANDDNLLKLSGDFDIESTNPCGEQPLPTYT 346 Query: 595 EETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 CNLGS+NL+ FD + + ++ LD VID + +++ + Sbjct: 347 S----CNLGSVNLVKFVRPDETGRQSFDMEGFMDQVYRSIYYLDLVIDATSYPLQRIGER 402 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--- 706 R +GLGLMG A L Y S D ++ A+ A+V+ G Sbjct: 403 TKRIRPVGLGLMGLADAAILSGDVYGSESFKSFCDSLGAHMAGAALMATVDAVAHMGKEP 462 Query: 707 ----------------------------------AYSSFKGSLWDQGVFP---IDSIGLL 729 +Y F + G P ++++ +L Sbjct: 463 FSESFAVARLFEEEHRAHGGELFARQWIDEMDLNSYREFIARMRTHGQVPYTLLNTLEIL 522 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +V + A+ RL L+ + +RNS ++IAPT +I+ I S I+P++ Sbjct: 523 PDVLGDEALPELKRLMTALLEGK-----LRNSRRLSIAPTGSISMIFDSSAGIEPNFAWR 577 Query: 790 YVKSNMSGD---FTVVNSF--LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + + M D + V F L+ + + +L +ISD +Y Sbjct: 578 WSRKVMKSDGDGWEVREYFHPLITQKEADELRGSGVISDPRY------------------ 619 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901 TA++I P ++ +++D S + L + + +Y + MG K T Y Sbjct: 620 -VTAYDISPEQHVDVTGIFARYVDSGISKTVNLSSSATVDDVRKVYETCYDMGCKGITIY 678 Query: 902 YLRSRSATSVE 912 SR +E Sbjct: 679 RDGSRDNQPIE 689 >gi|198275618|ref|ZP_03208149.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135] gi|198271247|gb|EDY95517.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135] Length = 883 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 155/658 (23%), Positives = 271/658 (41%), Gaps = 115/658 (17%) Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSC 371 P+ R+A +A E + A E ++LL F ++ S T + + LS+C Sbjct: 83 PEDMHWRIANEVARIEAKYPNAISAQELFDLLDHFKYIVPQGSPMTGIGNDYQIASLSNC 142 Query: 372 FLTTVPD--DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 F+ + D YG I +E L K GG+G+D + +R G+ + + S G++PF+ Sbjct: 143 FVIGLDGSADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 202 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + +++ V Q G+R GA+ + H D E F+D + G + N + + D Sbjct: 203 ERYSNSTREVAQDGRR-GALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKLDDE 257 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+ + +T P D V ++I A ALW+K Sbjct: 258 FMQAAVEGKPYTQQYP------------------------IDSPNPMVSKEIDASALWKK 293 Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604 ++ +++ P + F D S P + + S+N C EI L C L + Sbjct: 294 IVHNAWKSAEPGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 349 Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID-----INC-------------- 640 INL ++ N FD++ + A R++D++ID I C Sbjct: 350 INLYSYVVNPFTPEAYFDFELFKKHVALAQRIMDDIIDLELEKIECILEKIDSDPESMEV 409 Query: 641 -----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 H EK + R G+G+ L + + Y + EA E +++ + I+ A Sbjct: 410 KGSERHLWEKIYHKSGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEKVHKTIALEAY 469 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +SV +A+ERGA+ + F I L + EL ++E++K Sbjct: 470 RSSVNMAKERGAFEIYDAEREKNNPF----INRLKDADPEL---------YEEMRK---- 512 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814 G RN C+ IAPT T + + + I+P + +Y + ++ + V+ V+E D Sbjct: 513 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDANVHVDFVDETG--D 570 Query: 815 LWDEAMI---------------SDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIE 858 ++E ++ D +Y I +E+ P AT+ ++D + ++ Sbjct: 571 AFEEYVVFHHKFLTWMKINGYDPDKRYTQEEIDELVEKSP----YYKATSNDVDWLMKVK 626 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 R QKW+D + S+ + L + L + +Y +AW G K R S V ST Sbjct: 627 MQGRIQKWVDHSISVTINLPNNVSEDLVNQLYVEAWRSGCKGCTVYRDGSRAGVLIST 684 >gi|295134666|ref|YP_003585342.1| ribonucleotide reductase large subunit [Zunongwangia profunda SM-A87] gi|294982681|gb|ADF53146.1| ribonucleotide reductase large subunit [Zunongwangia profunda SM-A87] Length = 850 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 164/679 (24%), Positives = 276/679 (40%), Gaps = 111/679 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346 F + L ++ ++Y L + I + P R+A +A E E ++L+ Sbjct: 26 FKGDDLAARVWVNKYALKDSDGNIYEQTPNDMHRRIAKEIARVEQRYPNPMTEDEVFDLI 85 Query: 347 SSFHFMCSTPTLFNSGTRHP----QLSSCFLTT---VPDDLYGIFGALQENAMLAKYSGG 399 F ++ + +G +P LS+CF+ D G+ QE L K GG Sbjct: 86 KDFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGNEGSSDSYGGVMKIDQEQVQLMKRRGG 144 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ + H D Sbjct: 145 VGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSVSINHPDS 203 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 E+F+D + G + N + I D FMK V +T P SD Sbjct: 204 EDFIDAKMEQG----KVTGANVSVRIDDDFMKAVKNKTAYTQKYP-VFSDAP-------- 250 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC-NIRSPQQHVGV 578 K ++I A LW+K++ +++ P I F D N P + + Sbjct: 251 ---------------KFSKEIEAEKLWKKIVHNAWKSAEPGILFWDTVINESVPDCYADL 295 Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630 + S+N C EI L C L +INL ++ + +F+Y I A R Sbjct: 296 GYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEDPFTTKAKFNYTLFKKHISAAQR 351 Query: 631 VLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSA 666 ++D++ID+ I+ KK R G+G+ Sbjct: 352 IMDDIIDLELEKIDAILQKIDADPENEDVKGVERNLWLNIKKKAEEGRRTGIGITAEGDM 411 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L L I Y S E V + E + I+ A ASVE A+ERGA+ F + F I Sbjct: 412 LAGLGIKYGSEEGVAFSTEIHKNIALAAYRASVETAKERGAFGIFDSDREKENPF----I 467 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 L E DE +L +D L+ G RN + IAPT T + + + I+P + Sbjct: 468 LRLKEA-DE-------KLYYDMLE-----YGRRNIALLTIAPTGTTSLMTQTTSGIEPVF 514 Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIERI 837 +Y + ++ + V V+E+ D W+E ++ ++ HD Sbjct: 515 LPVYKRRRKVNPNDKDVRVDFVDEVG--DSWEEYVVFHHRFKEWMKINGHDIDKNYSNTD 572 Query: 838 PDDLKKI----HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 D+L K AT+ ++D + + QKW+D + S+ + L ++ S + +Y +A Sbjct: 573 LDELVKASPYYQATSNDVDWLSKVRMQGAVQKWVDHSISVTINLPNDVSEDLVGRLYLEA 632 Query: 893 WLMGLKTTYYLRSRSATSV 911 W G K R S + V Sbjct: 633 WQAGCKGVTVYRDGSRSGV 651 >gi|229084442|ref|ZP_04216721.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-44] gi|228698870|gb|EEL51576.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock3-44] Length = 364 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RV++ L L + K A + Sbjct: 62 NVAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVSIVSLYLGRGDVNK-AKQ 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANKQHPLKGIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|227550161|ref|ZP_03980210.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecium TX1330] gi|257897485|ref|ZP_05677138.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12] gi|227180728|gb|EEI61700.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecium TX1330] gi|257834050|gb|EEV60471.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12] Length = 827 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 112/429 (26%), Positives = 188/429 (43%), Gaps = 47/429 (10%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 ++K+ + I A LW + + P I F D N + Q G V ++N C E L Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472 Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 AVCNL +INL + D++KL +R +VR DNVID + +K ++ Sbjct: 473 PY----AVCNLAAINLANMVDKKTKVVDFEKLTDVVRASVRFQDNVIDATPYFFKKNEQQ 528 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 R +GLG+MG L Y S + + D+ E I+ A SVELA+E+G++ Sbjct: 529 AKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP 588 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G ++ + L + M ++P + +++ + G+RNS+ + +APT Sbjct: 589 FLVGKTVEE------TTALRQRFIESGYMK---KMP-ESIRQAILKYGIRNSHLLTVAPT 638 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + GVS ++P + Y +S G F VN+ +V+E ++ Sbjct: 639 GSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK---------------- 682 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLD 886 N E+ D+L TA E+ P + Q+W+D S++ ++ P G K++ Sbjct: 683 ---NPEKTADNLPPFFVTAMELSPKDHVSVQCTIQRWVD--SSISKTVNAPKGYQVKQVA 737 Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 IY + G K T Y SR + + TL+ D PV + +L S Sbjct: 738 AIYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVADNQITLDSLESS 793 Query: 945 TSDTECEVC 953 ++ C +C Sbjct: 794 EAEEICPIC 802 Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352 +I R +IN +E P + +F ++A +A + + E EK+A EFY L+ + + Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160 Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + L+ +GT +C++ + D G+ QE + GG+G + + +R Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 A +HG NGKS G + +L + V QGG R+GA L WH D+ EF+ Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273 >gi|229016700|ref|ZP_04173633.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273] gi|229022912|ref|ZP_04179432.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272] gi|228738447|gb|EEL88923.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272] gi|228744608|gb|EEL94677.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273] Length = 364 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 11/308 (3%) Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341 ++ Y +F F+ Y+ Y Y L N + + +++ RVA+ L L + K A Sbjct: 62 NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-ANH 119 Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F +++ ++ +TPT N+G +R ++ SCFL + D L I + L+K GG+ Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDI 299 Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E Y+ ++K +K ISA + K+ + E+G+P++ FK N + P + +G Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356 Query: 578 VVHSSNLC 585 V SNLC Sbjct: 357 TVKMSNLC 364 >gi|292656576|ref|YP_003536473.1| ribonucleoside-diphosphate reductase [Haloferax volcanii DS2] gi|291372162|gb|ADE04389.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Haloferax volcanii DS2] Length = 1033 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 113/461 (24%), Positives = 185/461 (40%), Gaps = 105/461 (22%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F L+ FM ++PTL N+G QLS+CF+ + DD+ I +E A + + GG+G Sbjct: 149 FEELMEQLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAEVFQSGGGMG 208 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R G + T G + G I F++ + + QGG R+GA + H DV + Sbjct: 209 YAFWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVSHPDVIQ 268 Query: 462 FL-----------DLRKNTGDDRRRTH-------------------------------DM 479 FL LR N DD T + Sbjct: 269 FLHAKNKDVSLAHTLRLNDPDDFTHTKFVDALDEARELIDEDGRVPKHLRNAVEGHLSNF 328 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYENYERQAD 530 N + I D FMK + + + +P + +++D++G + Sbjct: 329 NISVGITDGFMKALYNDEEFVFTNPRTEEPHVATPQTKEIYDMFG------------LGE 376 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-------RSPQQHVGVVHSSN 583 E+ + A LW +++ +E G P + + + N + P + ++N Sbjct: 377 YVEVGEVLSVPAKELWDQIIEGAWENGEPGVVYLERANKEHSFDVEKHPDHQ---ILATN 433 Query: 584 LCTEITLNSSSEETAVCNLGSINLL---------------AH-------------FANNQ 615 C E L EE CNLG INL AH F + Sbjct: 434 PCGEQPL----EEYEACNLGHINLSTLVAEDSPDWRVWYDAHSDEYDSLEAATEAFLEDA 489 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+++ I + R L+NV+ ++ +EK ++ R IGLG+MG L + Y Sbjct: 490 VDWEEFNHRIESGTRFLENVVTMSDFPVEKIEEKVRELRKIGLGIMGLAQLYIQLGVRYG 549 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 S E EIA + M I+ + AS ELA+ERG + +++ S + Sbjct: 550 SDEGNEIAQQLMTHINHGSKRASHELAEERGPFEAWEDSKY 590 >gi|305665964|ref|YP_003862251.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170] gi|88710739|gb|EAR02971.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170] Length = 847 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 171/706 (24%), Positives = 288/706 (40%), Gaps = 125/706 (17%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKE-------TEKEKRAVE 341 F + L Q+ ++Y L + G+ EM P R+A ++ E TEKE Sbjct: 26 FKGDDLAAQVWINKYALKDSEGNLYEMNPDDMHYRIAKEISRVEQKYPNPLTEKE----- 80 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFL--TTVPDDLYG-IFGALQENAMLA 394 Y+L+ +F ++ + +G +P LS+CF+ T D YG I QE L Sbjct: 81 VYDLIKNFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGTDGKSDSYGGIMKIDQEQVQLM 139 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ + Sbjct: 140 KRRGGVGHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSI 198 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E+F+D + G + N + I D FMK V N +T Sbjct: 199 NHPDAEDFIDAKMEQG----KVTGANVSVRIDDDFMKAVDNNTNYT-------------- 240 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP-CNIRSPQ 573 ++F I +N + +I A LW K++ +++ P I F D N P Sbjct: 241 -QKFPIHSDN---------PRFTNEIEANKLWDKIVHNAWKSAEPGILFWDTIINESVPD 290 Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTI 625 + + + S+N C EI L C L +INL ++ + F++ I Sbjct: 291 CYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVDQPFTKDASFNFPLFKKHI 346 Query: 626 RTAVRVLDNVIDINCHTI------------------------EKAKKSNHTHRAIGLGLM 661 A R++D++ID+ + E K+ R G+G+ Sbjct: 347 ALAQRIMDDIIDLELEKVDGILEKIMADPELEETKSVEISLWENIKEKAIKGRRTGIGIT 406 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L + Y S EA E + E + I+ A ASV A++RGA+ F + F Sbjct: 407 AEGDMLAALGLRYGSEEANEFSIEVHKNIALEAYRASVHAAKDRGAFEIFDAEREKENPF 466 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 I L E ++L + G RN + IAPT T + + + Sbjct: 467 ----ILRLKEADEKLYY-------------EMLEYGRRNIALLTIAPTGTTSLMTQTTSG 509 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH-----DGSIGNIE 835 I+P + +Y + ++ + VN V+E+ D W+E ++ ++ +G N Sbjct: 510 IEPVFLPVYKRRRKVNPNDKNVNVTFVDEVG--DSWEEYVVFHHRFRQWMEVNGIDTNKS 567 Query: 836 RIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 +L KI AT+ ++D + + QKW+D + S+ + L P+ + D + Sbjct: 568 YSQVELDKIVKKSPYYKATSNDVDWLSKVRLQGGVQKWVDHSISVTINL--PNEVQEDLV 625 Query: 889 ---YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 Y +AW G K R S + V S + L P P Sbjct: 626 GKLYLEAWKAGCKGVTVYRDGSRSGVLISNEPEAEETLTHFPTKRP 671 >gi|119718033|ref|YP_924998.1| vitamin B12-dependent ribonucleotide reductase [Nocardioides sp. JS614] gi|119538694|gb|ABL83311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nocardioides sp. JS614] Length = 956 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 144/592 (24%), Positives = 259/592 (43%), Gaps = 54/592 (9%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E LL +F ++P FN GT PQ +S+CF+ +V D + I +E + K G Sbjct: 121 ELTWLLVHQYFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILNWYKEEGFIFKGGSG 180 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458 G + + +R + + G + G + F++ A+ +A + GG R+ A L+ H D Sbjct: 181 AGLNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPD 239 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDE-VSDLHDL 513 +EEF++ + D R D A + DL K +T QNA ++ DE + + D Sbjct: 240 IEEFIETKAREEDKIRALRD---AGFDMDLGGKDITSVQYQNANNSVRVSDEFMRAVED- 295 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G +F + R GE V ++ A L+RK+ +E P + + D N Sbjct: 296 -GTDFGL------RARKTGE--VIERVDARELFRKISQAAWECADPGLQYDDTINDWHTN 346 Query: 574 QHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRV 631 G + +SN C+E ++L++SS CNL S+NLL ++ FD + A + + Sbjct: 347 PETGRITASNPCSEYMSLDNSS-----CNLASLNLLKFLKDDDTFDAELFAKAVEVIITA 401 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 +D I E ++ +R +G+G + L + + Y S +A ++ Sbjct: 402 MDISICFADFPTEAIGRTTVDYRQLGIGYANLGALLMAMGLGYDSDGGRAMAAAITSLMT 461 Query: 692 FHAISASVELAQERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + S ELA G Y+ + + + + D++ LA ++ ++ + Sbjct: 462 GTSYKRSAELAGVVGPYNGYARNAEAHKRVMRKHQAANDTVRTLAITDSQV--HKLATQA 519 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803 W ++ + T G RN+ +APT TI + + I+P + + K + G +VN Sbjct: 520 WADVIELGATHGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVN 579 Query: 804 SFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDP 853 + LK+ EA+++ + H G++ P L+ H F+ + P Sbjct: 580 QTVPRALKKLGYQPEQIEAIVAYIAEH----GHVVDAP-GLRTEHYEVFDTAMGVRSLKP 634 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 M + + Q ++ A S + L E + + ++ IY Q+W +GLK T R Sbjct: 635 MGHVRMMAAAQPFLSGAISKTVNLPETATVEDVEDIYLQSWKLGLKATAIYR 686 >gi|38639972|ref|NP_943927.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1] gi|33414661|gb|AAQ17704.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1] Length = 473 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 117/449 (26%), Positives = 197/449 (43%), Gaps = 30/449 (6%) Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET-ALIFSSRTLI 210 G +F K+L I+ A +G + + +L+ ++ DG+S +++ A+ F++ + Sbjct: 8 GITENFEPKKLLKILGFATAGTR-IDPNEILNGIMPSITDGMSTKNIQKLAIKFAADRIS 66 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 ++ +Y V AR + +R++V P H + +++G+ + L Sbjct: 67 IEQSDYQYVAARLQMYAIRKDVYNQF--DPIHLKRHTLDL---------VQDGIYDKDLA 115 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328 D + L +K++RDF Y G+ ++Y + E PQ +M VAM L Sbjct: 116 IKWTDDEFNELNAYIKHDRDFDLAYAGVMQFKEKYLAKDRSTDQIYETPQILYMLVAMCL 175 Query: 329 ALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFG 385 E T++ + FY++ S TP L +G R P Q SSC D+L I Sbjct: 176 HQDEKTDRIAKVKNFYDVTSLGKLSLPTPIL--AGVRTPTRQFSSCVKIESGDELDSINA 233 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 G+G + +R G+ I + G+IPF K + +QGG R Sbjct: 234 TASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQGGVRG 293 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA Y WH++VE+ L L+ N G + R ++ I LF +R+ + TLFSPD Sbjct: 294 GAATLYYPMWHLEVEKILVLKNNKGVEENRIRQLDYGIQINKLFFERLKNDDYITLFSPD 353 Query: 506 -EVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 + +L+DL+ K+ F+ YE E + + ++I A L+ TG + Sbjct: 354 VQNGELYDLFYKDPVKFKELYEMLENEPWCRK----KRIKASELFNLFAQERTGTGRIYP 409 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 F D N +P + + NLC EI L Sbjct: 410 MFVDNVNSATPYKE--PIRMGNLCIEIAL 436 >gi|261881174|ref|ZP_06007601.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM 17361] gi|270332043|gb|EFA42829.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM 17361] Length = 857 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 171/709 (24%), Positives = 298/709 (42%), Gaps = 125/709 (17%) Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMG 327 ++ +D + A+ LKY F + L ++ ++Y + + I + P+ R+A Sbjct: 3 NQKTFSYDEAFEAS-LKY---FDGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIAGE 58 Query: 328 LALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL-- 380 +A E + + A + + LL F ++ S T + + LS+CF+ + D Sbjct: 59 IARIEQKYKNPLSAEDVFGLLDHFRYIIPAGSPMTGIGNNQQVASLSNCFVIGLDGDADS 118 Query: 381 YG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 YG I +E L K GG+G+D + +R G+ ++ + S G++PF++ +++ V Sbjct: 119 YGAIMRVDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVA 178 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R+GA+ + H D E F+D + G + N + I D FM+ + Sbjct: 179 QDG-RRGALMLSVGIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDAFMEAAVGDK-- 231 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 Y ++F + D + V ++ISA LW K++ +++ P Sbjct: 232 -------------FYMQQFPL---------DAKKPMVEKEISARKLWEKIVHNAWQSAEP 269 Query: 560 WITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613 + F D S P + + S+N C EI L C L S+NL ++ N Sbjct: 270 GVLFWDTIIRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVKNPF 325 Query: 614 ---NQFDYDKLASTIRTAVRVLDNVID---------------------INC---HTIEKA 646 FD++K A ++ A R++D+++D + C H EK Sbjct: 326 TKEASFDFEKFAKHVQLAQRIMDDIVDLEMEKINMILDKVGTDPQNEEVKCTERHLWEKI 385 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ + R G+G+ + + + Y S EA E + + + ++ +A +SV +A ERG Sbjct: 386 QRKSGMGRRTGVGITAEGDMIAAMGLRYGSEEATEFSVKVHKTLALNAYRSSVTMAAERG 445 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A+ + F + L E +L K VK G RN C+ I Sbjct: 446 AFEIYDAEREKNNPF----VNRLKEADPQL------------YKDMVKH-GRRNIACLTI 488 Query: 767 APTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSF--LVNELKQRD 814 APT T + + + I+P + +Y + +++ DF V +SF + K+ Sbjct: 489 APTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPSDTDVHVDFVDEVGDSFEEYIVYHKKFL 548 Query: 815 LWDE--AMISDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 W E + ++ KY I + R P ATA ++D + + QKW+D + Sbjct: 549 TWMEVNGIDTNKKYSQEEIDELVARSP----YYKATANDVDWLMKVRMQGAVQKWVDHSI 604 Query: 872 SLNLYL----DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914 S+ + L DE KL Y +AW G K T Y SRS V S Sbjct: 605 SVTVNLPGNVDEALVNKL---YVEAWRSGCKGCTIYRDGSRSGVMVSVS 650 >gi|90416806|ref|ZP_01224736.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium HTCC2207] gi|90331559|gb|EAS46795.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium HTCC2207] Length = 720 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/448 (24%), Positives = 190/448 (42%), Gaps = 40/448 (8%) Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD + GI E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 115 VPDSMVGILERNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMC 174 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ G R+GA A + H DV +F+ ++ G R N + I + F++ V Sbjct: 175 FTVSSAGGRRGAQMATFDVSHPDVFDFVRAKREDG----RLRQFNLSLLITEEFIEAVRN 230 Query: 496 NAGWTLFSP---DEVSDLHDLYG-----KEFEIAYENYERQADRGEIKVFRKISAVALWR 547 + W L P E+ DL G K F Y +++ I A LW Sbjct: 231 DGSWDLTFPISAKEIDAGLDLKGDNIVWKPFPTTENYYCNDDGLVACRIYETIRAQKLWN 290 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 +++ ++ P D N + + ++N C E L C LGS+NL Sbjct: 291 AIMSSTYDYAEPGFILIDQVNKNNNNWFCEDIRATNPCGEQPLPPYGS----CLLGSVNL 346 Query: 608 LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 N FD+++ A + R+LDNV++IN ++ +K R G+G +G Sbjct: 347 TKFVRNPFTKDAYFDWEEYAEVVAVFTRMLDNVVEINGLPLDNQRKEIEYKRRHGMGFLG 406 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGSL 715 S + +L + Y ++E D ++ + A +ELA+E+G + L Sbjct: 407 LGSTITMLQMKYGDEGSLEFTDRIARDMAVAGLKAGLELAREKGPAPIMEDDFEVTAALL 466 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPT 769 + + D I ++ ++ + + S+ EL + + G R S+ +IAPT Sbjct: 467 FKRPELAKDGIKAGDSLKGKVLLGKYSKYMQTIATVAPELIESIIEEGCRFSHHSSIAPT 526 Query: 770 ATI----ANICGVSQSIDPSYQNLYVKS 793 TI AN VS I+PS+ + Y ++ Sbjct: 527 GTISLSLAN--NVSNGIEPSFAHHYARN 552 >gi|167754049|ref|ZP_02426176.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216] gi|167658674|gb|EDS02804.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216] Length = 848 Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 153/621 (24%), Positives = 249/621 (40%), Gaps = 111/621 (17%) Query: 341 EFYNLLSSFHFMCSTP---TLFNSGTRHPQLSSCFLT--TVPDDLYG-IFGALQENAMLA 394 E + LL F ++ T + + LS+CF+ P D YG IF +E L Sbjct: 80 EVFELLDHFRYIIPQGGPMTGIGNNFQAASLSNCFVIGHKNPADSYGGIFRMDEEQVQLM 139 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ L Sbjct: 140 KRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLTLSI 198 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + +T + N + I D FM+ Y Sbjct: 199 KHPDAERFIDAKVDTS----KVTGANVSVKIDDEFMRAALAGKK---------------Y 239 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 ++F I + Q D I A LW K++ +++ P + F D S P Sbjct: 240 HQQFPIHSDKPLYQQD---------IDAKKLWDKIIHNAWKSAEPGVMFWDTIIRESIPD 290 Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTI 625 + ++N C EI L C L +INLL++ F+++K + Sbjct: 291 CYADEGFTTVATNPCGEIPLCPYDS----CRLLAINLLSYVDKPFTKEASFNFEKFKQHV 346 Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661 A+R++D++ID+ IE K + R GLG+ Sbjct: 347 EKAMRMMDDIIDLELEKIELIINKIAADPEDEDIRRVELELWKKIRTMARKGRRTGLGIT 406 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L + Y +PEA A + + ++ A ASV++A ERGA+ F ++ Sbjct: 407 AEGDMLAALGLRYGTPEATAFAVKVQKTLALEAYRASVKMAAERGAFEIFDARKEEKNPM 466 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 IG + E EL + E+ K G RN + IAPT T + + + Sbjct: 467 ----IGRIREADPEL---------YAEMVKH----GRRNIAMLTIAPTGTTSLMSQTTSG 509 Query: 782 IDPSYQNLYVK----------------SNMSGDFTVVNSFLVNELKQRDLWDEAMISDL- 824 I+P ++ +Y + +M F N + N +K W EA D Sbjct: 510 IEPVFRPVYKRRRKINPSDQDAKVAFVDDMGEKFEEYNVYHHNFVK----WLEANGYDTS 565 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 K D S + R ATA +ID + ++ QKW+D + S+ + L ++ S Sbjct: 566 KLQDISDDELNRWVAASPYHGATANDIDWVAKVKMQGEIQKWVDHSISVTVNLPNDVSEA 625 Query: 884 KLDFIYRQAWLMGLKTTYYLR 904 + +YR AW G K R Sbjct: 626 LVADVYRTAWECGCKGVTVYR 646 >gi|2760640|dbj|BAA24243.1| P25 [Leucania separata nuclear polyhedrosis virus] Length = 222 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 6/190 (3%) Query: 370 SCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL T+ D + GI+ L + AM++K+ GG+G + VRG + I TNG + G++P L Sbjct: 19 SCFLLTMESDSIRGIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPML 78 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 +V N+ V + K L D+ + L +R+N G + + D+ A W+PD+ Sbjct: 79 RVFNNMVRHVIKVASEKAPKQCTLNRGIGDIMDVLHMRRNIGSEDTKARDLMNALWVPDI 138 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV +N W+L P+E L+D YG +FE Y++YE D+G+ + ++ AV L R Sbjct: 139 FMKRVEENGIWSLMCPNECPKLNDTYGDDFEYWYKHYE---DKGQFR--EQMPAVTLMRN 193 Query: 549 MLTMLFETGH 558 ++ + ET H Sbjct: 194 IIEIQAETAH 203 >gi|311898754|dbj|BAJ31162.1| putative vitamin B12-dependent ribonucleotide reductase [Kitasatospora setae KM-6054] Length = 964 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 145/581 (24%), Positives = 249/581 (42%), Gaps = 52/581 (8%) Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F ++P FN GT+ PQ +S+CF+ V D + I +E M+ K G G + + +R Sbjct: 144 FSFNSPVWFNVGTQQPQQVSACFILAVDDSMDSILDWYKEEGMIFKGGSGAGLNLSRIRS 203 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468 + + G + G + F++ A+ +A + GG R+ A L+ H DVE F++ + Sbjct: 204 -SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEAFIETKVK 262 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + R D A + DL +T QNA ++ V+D EF A EN Sbjct: 263 EEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND-------EFMTAVEN 308 Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 R + +V + A AL+RKM + P I + N G +++S Sbjct: 309 GGSFGLRARMTGEVIETVDAKALFRKMAEAAWACADPGIQYDSVINHWHTCPESGRINAS 368 Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINC 640 N C+E + L++SS CNL S+NL+ ++ FD ++ A + + +D I Sbjct: 369 NPCSEYMHLDNSS-----CNLASLNLMKFLRDDDSFDAERFAKVVELVITAMDISICFAD 423 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 EK ++ +R +G+G + L Y S +A ++ A S E Sbjct: 424 FPTEKIAETTRAYRQLGIGYANLGALLMATGHAYDSAGGRALAGAITSLMTGTAYRRSAE 483 Query: 701 LAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTI 756 LA G Y + + + Q V D+ +A + D + + + W ++ + Sbjct: 484 LAAVVGPYDGYARNAAPHQRVMRQHADASAAVAPLDDLDAPVWAVANDTWADVVRLGARN 543 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRD 814 G RN+ +APT TI + + ++P + K + G +VN + LK+ Sbjct: 544 GFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPRALKRLG 603 Query: 815 LWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQ 864 D EA+++ + H GN+ P LK H F+ I PM + + Q Sbjct: 604 YQDEQVEAVVAHIAEH----GNVIDAP-GLKSAHYEVFDCAMGERSISPMGHVRMMAAIQ 658 Query: 865 KWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 WI A S + + E + ++++ IY +AW +G+K R Sbjct: 659 PWISGAISKTVNMPEDATVEEVEEIYFEAWKLGVKALAIYR 699 >gi|309789876|ref|ZP_07684454.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oscillochloris trichoides DG6] gi|308228083|gb|EFO81733.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oscillochloris trichoides DG6] Length = 491 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/334 (29%), Positives = 154/334 (46%), Gaps = 26/334 (7%) Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 CNLGS+NL + Q D+D L + + + R LDNVID N + + + + R IGL Sbjct: 7 CNLGSVNLGLFVTSKQTVDWDNLRTVVHASTRFLDNVIDANHYPLPQIGALSQRIRRIGL 66 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+MG+ L + IPYAS EA+ +A E M F+ + AS ELA+ERG + ++ S+W Sbjct: 67 GVMGWADMLVKMGIPYASDEAIALAREVMAFVDEESKVASEELARERGTFPEWEQSVWGP 126 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 DE R +K +RN N +APT TI+ I G Sbjct: 127 ---------------DETCARRPDGSRIRPFRK------LRNCNVTTVAPTGTISIIAGC 165 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P + + + VN V + QR+ W + + G I + E +P Sbjct: 166 SSGIEPLFAIAFWRHQADARMLDVNEQFVAQ-AQREGWYSQELMERIADSGHIHHPE-VP 223 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 +++++ TA +I P W + + + Q+ +D A S + + +E + + Y A+ +G Sbjct: 224 SEVQRVWTTAHDIAPEWHVRTQAAFQESVDSAISKTINMPNEATPDDVRAAYELAFNLGC 283 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 K R S ++ ST G K A P P Sbjct: 284 KGITVYRDGSRSNQVLSTGSGEKEK-TAAPAPAP 316 >gi|223937584|ref|ZP_03629487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [bacterium Ellin514] gi|223893747|gb|EEF60205.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [bacterium Ellin514] Length = 1035 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 142/595 (23%), Positives = 241/595 (40%), Gaps = 59/595 (9%) Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 +PQ S+CF+ +V D++ I AML KY G G D +P+R + G G+ G Sbjct: 198 YPQGSACFIQSVEDNMEDIMHLAYSEAMLFKYGSGTGTDLSPIRSSREKLSG-GGRPSGP 256 Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 + FLKV + A V GGK R+ A L WH D+EEF+D ++ + Sbjct: 257 LSFLKVYDQVANVVKSGGKTRRAAKMNTLRDWHGDIEEFIDAKQK--------EEKKAWA 308 Query: 484 WIPDLFMKRVTQNA-GWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 I F A G ++ + +S + D + E E + + + K Sbjct: 309 LIEQGFDGSYNGEAYGSVMYQNENLSVRVSDAFMTAAEAGTEWWTKSVTGN--RPLEKKD 366 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVC 600 A L K+ + G P + + D + +HS+N C+E + LN+++ C Sbjct: 367 ANKLMHKIAEGTWICGDPGLQYDDAIQKWHTCKGTEPIHSTNPCSEYVFLNNTA-----C 421 Query: 601 NLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NL S+NL+ + FD ++ + +R + + ++D + ++ +++H +R +GLG Sbjct: 422 NLASLNLMKFKREDGVFDVERFKAAVRIYITAQEIIVDNASYPTKQIAENSHIYRTLGLG 481 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 S + + Y S +A ++ HA S E+A GA+ + + Sbjct: 482 YANLGSLIMSYGLAYDSDGGRALAGAITAIMTGHAYEQSAEVATSMGAFKGYHDARCAHV 541 Query: 720 VFPI----------------DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 PI D++ + R+ + +R WD +R + G RN+ Sbjct: 542 SKPIARDNVESMLGVIKLHRDAVEQIQPSREFHYLKEEARKTWDRALERGQKAGYRNAQV 601 Query: 764 MAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +APT TIA + + ++P + Y G +VN + L++ EA I Sbjct: 602 TVLAPTGTIAFLMDCDTTGVEPDIALVKYKLLAGGGLLKLVNRTVPEGLRRLGYGTEA-I 660 Query: 822 SDLKYHDGSIGNIERIPDD-------LKKIHATAFE-----------IDPMWLIESASRR 863 + H IE + D+ L+ H F+ I M ++ Sbjct: 661 QKIVAHVEKYDTIEDVQDNGQAVSSGLRPEHLEVFDCAFKPYQGKRSIKYMAHLKMMGAA 720 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q +I A S + L E + + + Y QAW MGLK R S S +T K Sbjct: 721 QPFISGAISKTVNLPQECTVEDIRDAYVQAWKMGLKCVAIYRDGSKRSQPLNTKK 775 >gi|163789925|ref|ZP_02184361.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium sp. AT7] gi|159874865|gb|EDP68933.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium sp. AT7] Length = 849 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 120/440 (27%), Positives = 188/440 (42%), Gaps = 68/440 (15%) Query: 489 FMKRVTQNAGWTL-------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 FM+ V + + L +SP+++ + Y + + E +A + +R I Sbjct: 379 FMEAVENDTDYELRFPAVESYSPEDMEE----YNAHWSEVGDVREWEASGHAVHTYRTIK 434 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600 A LW+ + P I F D N + G V ++N C E L S VC Sbjct: 435 ARELWKLITICATYAAEPGIFFIDNANKMTNAAAYGQKVVATNPCGEQPLAPYS----VC 490 Query: 601 NLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 NL ++NL +A + D+ KL T++ VR+ DNVID + + +K R +GL Sbjct: 491 NLAAVNLAEMADKESGTIDFAKLKQTVQVGVRMQDNVIDATPYFLADNEKQALGERRVGL 550 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+MG L + Y S E ++ D+ E I+ A AS+ELA+ERG+ Sbjct: 551 GIMGLADLLIYCGVEYGSQEGNQLIDKVFETIAVSAYEASIELAKERGS----------- 599 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-------GMRNSNCMAIAPTAT 771 FP L+ E E R L +K+ K I G+RNS+ + +APT + Sbjct: 600 --FPF----LIGETDAETTNLRERFLQSGYMKQMPKHIHEGVLKYGIRNSHLLTVAPTGS 653 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + GVS ++P Y Y +S G F V + +V E L H Sbjct: 654 TGTMVGVSTGLEPYYSFSYFRSGRLGKFIEVKADIVQEY-------------LDQHP--- 697 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFI 888 E PD+L K +A + P ++ Q+WID S++ ++ P G +++ I Sbjct: 698 ---EADPDNLPKQFVSAMSLTPEAHVDVQCTIQRWID--SSISKTVNAPQGYSVEQVQKI 752 Query: 889 YRQAWLMGLK--TTYYLRSR 906 Y + + G K T Y SR Sbjct: 753 YERLYKGGAKGGTVYVDGSR 772 Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 21/181 (11%) Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGTRH 365 IE P F R A GLA E+ EKRA FY L + +F+ + L+ +G+ Sbjct: 123 IEKPLEIFYEQIAKRNATGLAATESTPEKRAAAYATFYEELKNLNFIPAGRVLYGAGSET 182 Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +C++ VPD GI ++ + GG+G + + +R G NGKS G Sbjct: 183 DVTYFNCYVMPFVPDSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSG 242 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472 + +L V QGG R+GA L WH D+ EF+ L +NT DD Sbjct: 243 AVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLIENTADD 302 Query: 473 R 473 + Sbjct: 303 Q 303 >gi|323344465|ref|ZP_08084690.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269] gi|323094592|gb|EFZ37168.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269] Length = 862 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 167/708 (23%), Positives = 295/708 (41%), Gaps = 110/708 (15%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ + R+A +A E + +A E + LL Sbjct: 20 FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMYWRIANEIARIEKKYANPLKAKEIFELL 79 Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400 F ++ + + G H LS+CF+ + D YG I +E L K GG+ Sbjct: 80 DHFRYIVPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V Q G R+GA+ + H D E Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPDSE 198 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + I D FM NA +SD Y ++F I Sbjct: 199 LFIDAKMTEG----KVTGANVSVKIDDEFM-----NAA--------ISD--KPYTQQFPI 239 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578 +N + ISA LW K++ +++ P + F D S P + + Sbjct: 240 DSKNPQ---------CTNSISAKKLWEKIVHNAWKSAEPGVLFWDTIIRESIPDCYADLG 290 Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 S+N C EI L C L INL ++ N FD+D ++ A R+ Sbjct: 291 FHTVSTNPCGEIPLCPYDS----CRLLCINLYSYVVNPFTKDAYFDFDTFKKHVQIAQRI 346 Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 +D+++D+ H EK K + R G+G+ L Sbjct: 347 MDDIVDLELEKIDKIMEKITIDPQSDEVKGAEYHLWEKIKYKSGLGRRTGVGITAEGDML 406 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + Y + EA + + ++ A +SV +A+ERGA+ + Sbjct: 407 AAMGLRYGTQEATDFSVSVHRALALGAYRSSVTMAKERGAFEVYDAK------------- 453 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 E R+ + P EL + + G RN C+ IAPT T + + + I+P + Sbjct: 454 --REERNPFILRLKEADP--ELYRDMVQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG-SIGNI--------ERI 837 +Y + ++ + T V+ V+E+ D ++E ++ K+ + I I E I Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFLEWMRINGIDSTKKYTQEEI 567 Query: 838 PDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 + + K ATA ++D + + QKW+D + S+ + L +E ++ +Y +AW Sbjct: 568 DELVAKSPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNEVDEALVNRLYVEAW 627 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 G K R S V S K D K N +++ LG+P Sbjct: 628 RSGCKGCTIYRDGSRAGVMISVSKK-DKKKNEDGEAVKDNNMEQLGMP 674 >gi|332664296|ref|YP_004447084.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Haliscomenobacter hydrossis DSM 1100] gi|332333110|gb|AEE50211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Haliscomenobacter hydrossis DSM 1100] Length = 865 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 159/681 (23%), Positives = 288/681 (42%), Gaps = 115/681 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L + ++Y L + I + P R+A +A E++ E Y L+ Sbjct: 28 FNGDNLAANVWVNKYALKDSFGNIYEKTPDDMHRRIAKEIARIESKYPNPLNEEEAYELV 87 Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGN 402 +F ++ S + + LS+CF+ D YG I +E L K GG+G+ Sbjct: 88 RNFKYIVPQGSPMAGIGNNMQVSSLSNCFVIGNFADSYGGIIRTDEEQVQLMKRRGGVGH 147 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 D + +R G+ + + S G++PF++ +++ V Q G R+GA+ + + H D E+F Sbjct: 148 DLSHIRPKGSPVMNSALSSTGIVPFMERYSNSTREVAQDG-RRGALMLTVSSKHPDAEDF 206 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 +D + G + N + I D FM+ +P Y ++F + Sbjct: 207 IDAKLEQG----KVTGANVSVRIDDDFMRAAIGG------TP---------YQQQFPVDA 247 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVH- 580 +N KV ++I A ALW K++ +++ P + F D S P + + + Sbjct: 248 KN---------PKVTKEIDASALWDKIIYNAWKSAEPGVLFWDTVLRESVPDCYADLGYR 298 Query: 581 --SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLD 633 S+N C EI L+ C L ++NL ++ F+++K A + A R +D Sbjct: 299 TISTNPCGEIPLSPYDS----CRLLALNLYSYVEQPFTPEAFFNFEKFAKHAQLAQRFMD 354 Query: 634 NVIDINCH----TIEKAKKSNHTH--------------------RAIGLGLMGFQSALHL 669 ++ID+ IEK +K R G+G+ L Sbjct: 355 DIIDMELEKVDRIIEKIEKDPEARDLKEVEYELWNKVRTACIGGRRTGVGITAEGDTLAA 414 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L Y S E +E+A + + ++ +A ASV++A++RGA+ F +Q F I L Sbjct: 415 LGFRYGSDEGIEMAVKIHQSLAVNAYRASVDMARDRGAFPIFDSKREEQNPF----IQRL 470 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 A V L + ++ G RN + IAPT T + + + I+P + Sbjct: 471 ASVDPTLYAD-------------MQRYGRRNIALLTIAPTGTTSLMTQTTSGIEPVFMVS 517 Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH--- 845 Y + ++ + V ++E+ D W+E + K+ D N ++ D++ K++ Sbjct: 518 YKRRRKVNPNDKEVKVAFIDEVG--DHWEEYNVFHHKFLDWLQQNGYQV-DEVTKMNAEE 574 Query: 846 ------------ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYR 890 ATA ++D + ++ QKW+D S+++ ++ P +D IY+ Sbjct: 575 LQPIIEKSPYHKATANDVDWVQKVKMQGAIQKWVD--HSISVTVNVPEDTSVDMVKRIYQ 632 Query: 891 QAWLMGLKTTYYLRSRSATSV 911 AW +G K R S + V Sbjct: 633 TAWEVGCKGCTIYRDGSRSGV 653 >gi|76802311|ref|YP_327319.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas pharaonis DSM 2160] gi|76558176|emb|CAI49764.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas pharaonis DSM 2160] Length = 1042 Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 146/606 (24%), Positives = 236/606 (38%), Gaps = 126/606 (20%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A F + S FM ++PTL N+G QLS+CF+ + DD+ I +E A + + Sbjct: 143 EATADAFQEQMESLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDIHQTAKEAAQVFQ 202 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + +R G + T G + G I F++ + + QGG R+GA + Sbjct: 203 SGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRIS 262 Query: 456 HIDVEEFL-----------DLRKNTGDD-------------------------------R 473 H DV +F+ LR N DD Sbjct: 263 HPDVIQFIHAKNKDVSLAETLRLNDPDDFTHNSFQEALEEARELIDEDGKVPKHLRNAVE 322 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYEN 524 + N + + D FM+ + +T +P E +L+D++G Sbjct: 323 GHLSNFNISVGVTDGFMEALKNGEEFTFTNPRTDEPHIATPETKELYDMFGL-------- 374 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG-VVH 580 D E+ I A LW M+ E G P + + + N ++H + Sbjct: 375 ----GDHVEVGEELSIPATKLWEHMIEGAHENGEPGVIYLERVNKEHSFDVEEHPDHQIL 430 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINL----------------------------LAHFA 612 ++N C E L EE CNLG INL + F Sbjct: 431 ATNPCGEQPL----EEYEACNLGHINLSTLADLDAPDWRVWYDEHGDDYETLADAVDAFL 486 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D++ L I R L+NV+ ++ ++K ++ R IGLG+MG L I Sbjct: 487 EEAIDFEALDGRIELGTRFLENVVTMSDFPVDKIEQKVREMRKIGLGVMGLAQLYIQLGI 546 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y S E E+A + M I+ + S ELA+ERG + WD+ + AE Sbjct: 547 KYGSEEGNEVARQLMRHINHGSKWTSHELAEERGVFDE-----WDKSKY-----ANPAEY 596 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 R+ + + L DE +RN N IAPT T + + + +P Y Y K Sbjct: 597 RE--WFEKQTGLDADEW---ADGFAIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYK 651 Query: 793 S---NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDL 841 + ++ GD +V + + + L++ L EA+ + + DG I + +PD + Sbjct: 652 NVSDDVQGDEMLVEFDDYFLRVLEENGLDVEAVKEEAQEQMATNEFDG-IDGLSTVPDAI 710 Query: 842 KKIHAT 847 ++ T Sbjct: 711 GELFVT 716 >gi|318059580|ref|ZP_07978303.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp. SA3_actG] gi|318075430|ref|ZP_07982762.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp. SA3_actF] Length = 959 Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 145/588 (24%), Positives = 248/588 (42%), Gaps = 47/588 (7%) Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 Y LL F ++P FN GT PQ +S+CF+ +V D + I +E M+ K G G Sbjct: 131 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAG 189 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460 + + +R + + G + G + F++ A+ +A + GG R+ A L+ H DVE Sbjct: 190 LNLSRIRS-SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 248 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516 F++ + + R D A + DL +T QNA ++ DE + GK Sbjct: 249 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK 305 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + R GE V ++ A +L+RKM + P I + D N Sbjct: 306 -FGL------RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPES 356 Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630 G ++ SN C+E + L+++S CNL S+NL+ N F+ ++ A + + Sbjct: 357 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVIT 411 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +D I EK ++ R +G+G + L Y S +A + Sbjct: 412 AMDISICFADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLM 471 Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746 + A S ELA G Y + + + + V D+ G+ + D + + + W Sbjct: 472 TGTAYRRSAELAAVVGPYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAW 531 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 ++ + + G RN+ +APT TI A C + ++P + K + G + + Sbjct: 532 QDVLRVGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 590 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857 V + +R + E I + H GN+ P LK H F+ I PM + Sbjct: 591 GTVPQALRRLGYQEEQIEAIVAHIAENGNVVDAP-ALKPEHYEVFDCAMGDRAISPMGHV 649 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 + Q WI A S + + E + ++++ IY +AW +G+K R Sbjct: 650 RMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 697 >gi|304321238|ref|YP_003854881.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula bermudensis HTCC2503] gi|303300140|gb|ADM09739.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula bermudensis HTCC2503] Length = 1196 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 149/595 (25%), Positives = 237/595 (39%), Gaps = 131/595 (22%) Query: 365 HPQLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 +PQ +CF+ +V D L G IF A L KY G G++++ +RG + G GKS Sbjct: 177 YPQPHACFIQSVSDSLVGENGIFDLWSREARLFKYGSGSGSNFSAIRGEDEPLAG-GGKS 235 Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD---------------- 464 G+I FLKV + A A+ GG R+ A L+ H D+E F+D Sbjct: 236 SGLISFLKVGDTAAGAIKSGGITRRAAKMVVLDIDHPDIENFIDWKVKEEQKVAALVTGS 295 Query: 465 -------------LRKNTGDDR---------RRTHDMNTANWIPDLFMKRVTQNA----- 497 +++ DDR RR + +PD + R A Sbjct: 296 LVTKRHVEAMFAAIKRGDEDDRLDPTRNEILRRVMKAARRDGVPDGIIGRALSLAASGRT 355 Query: 498 ---------GWT-----LFSPDEVSDLHDLYGKEFEIAYENYE-----RQADRGEIKVFR 538 GW S ++ L G EF +A ++ + R+ D G V + Sbjct: 356 EMPLDVYTVGWDDEAYRTVSGQNANNSIRLTG-EFLVAVDDDQQWPLTRRTDGG---VHK 411 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEET 597 +SA ALW K+ + + P + F D N G + +SN C+E + LN ++ Sbjct: 412 SVSARALWEKIGEAAWASADPGLQFHDTINDWHTCPMDGDIEASNPCSEYMFLNDTA--- 468 Query: 598 AVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL SINLLA + + D D L TIR VL+ + + + + + ++ +R + Sbjct: 469 --CNLASINLLAFLQEDGELDLDGLIHTIRLWTIVLEISVGMASYPDARIAQRSYDYRTL 526 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-- 714 GLG L +PY S A ++ A S +LA G + F + Sbjct: 527 GLGFANLGGLLMSAALPYDSDRGRAAAGALSALMTAIAYKTSADLAARLGPFPRFDANKE 586 Query: 715 --------------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 +D+G P GL+A + WDE Sbjct: 587 AVLRVMRNHRAALTGDDFDDLSVTPPRFDEGAVPF--AGLVA----------AASSAWDE 634 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 + + G+RN+ AIAPT TI + + I+P + + K ++G TV L+ Sbjct: 635 AISKAERSGVRNAQVTAIAPTGTIGLVMDCDTTGIEPDFALVKFK-QLAGGGTVR---LI 690 Query: 808 NELKQRDL----WDEAMISDLKYHDGSIGNIERIP----DDLKKIHATAFEIDPM 854 N+ R L + + I ++K G+++ P DDL++ + EID + Sbjct: 691 NQSVPRALARLGYTDQQIREIKAFAVGHGSLDHAPGVSFDDLRREGFSDREIDKL 745 >gi|311694338|gb|ADP97211.1| ribonucleotide-diphosphate reductase subunit alpha [marine bacterium HP15] Length = 714 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 140/572 (24%), Positives = 240/572 (41%), Gaps = 68/572 (11%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV D + I E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 106 TVQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDRM 165 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV +F+ ++ G R N + I + F++ V Sbjct: 166 CFTVSSAGGRRGAQMATFDVHHPDVIDFIQAKREDG----RLRQFNLSLLITEDFIEAVR 221 Query: 495 QNAGWTLFSP-------DEVSDLHDLYGKEFEIAYENYERQAD---RGEIKV----FRKI 540 +A W L P DE DL D E + Y ++ Q GE KV +R + Sbjct: 222 NDADWHLSFPVTKKEVEDEKLDLSD----ESQFVYRDFPEQKGYVVNGEGKVACRIYRTL 277 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A +W ++T ++ P D N + + ++N C E L C Sbjct: 278 KAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPYGS----C 333 Query: 601 NLGSINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 LGS+NL F + F+Y+K + R+LDNV++IN + + + R Sbjct: 334 LLGSVNLTMFVDYPFTDKASFNYEKYRKVVAIFTRMLDNVVEINGLPLAEQRHEITYKRR 393 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------Y 708 G+G++G S L +L +PY S E+V+ +E + ++ S+ LA+E+G + Sbjct: 394 HGMGILGLGSTLAMLRMPYGSEESVQFTEEVVREMAVEGWRQSLALAEEKGVAPIMDDEF 453 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI------GMRNSN 762 L D L +V+ + + S+ + K K + G R ++ Sbjct: 454 EITPKMLTKCPQLSEDGYKLGDKVKGRILHAKYSKYMQEIAKVEPKLVEELAEKGGRFTH 513 Query: 763 CMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 +IAPT TI AN S I+PS+ + Y + + + K ++ D Sbjct: 514 HTSIAPTGTISLSLAN--NASNGIEPSFSHHYAR-----------NIIREGRKTKEKVDV 560 Query: 819 AMISDLKY-HDGSIGNIERIPDDLKKIHA---TAFEIDPMWLIESASRRQKWIDQ--AQS 872 L Y H + G + D+ KK+ A T+ ++ P ++ + QKW+D +++ Sbjct: 561 FSFELLAYRHMVNPGAMPFSEDEDKKLPAYFTTSDDVTPSQHVDIQAAAQKWVDSSISKT 620 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 N+ D D IY A+ GLK R Sbjct: 621 ANVPTDFAYQDFKD-IYLYAYDKGLKGCTTFR 651 >gi|300726805|ref|ZP_07060235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella bryantii B14] gi|299775918|gb|EFI72498.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella bryantii B14] Length = 861 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 166/718 (23%), Positives = 300/718 (41%), Gaps = 117/718 (16%) Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGL 328 + M FD + LKY F + L ++ ++Y + + I + P R+A + Sbjct: 4 QKMYTFDEAF-EESLKY---FDGDQLAARVWVNKYAMKDSFGHIYEKSPLEMHWRIANEV 59 Query: 329 ALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--Y 381 A E + + A E ++LL F ++ + + G H LS+CF+ + D Y Sbjct: 60 ARIEKKYKNPLSAQEIFDLLDHFRYIVPAGSPMTGIGNTHQVASLSNCFVIGLDGDADSY 119 Query: 382 G-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 G I +E L K GG+G+D + +R G+ ++ + S G++PF++ +++ V Q Sbjct: 120 GAIMRIDEEQVQLMKRRGGVGHDLSHIRPAGSPVNNSALTSTGIVPFMERYSNSTREVAQ 179 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+R GA+ + H D E F+D + G + N + I D FM+ ++ + Sbjct: 180 DGRR-GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDEFMRCAIEDEPYR 234 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 P +HD+ V ++ISA LW K++ +++ P Sbjct: 235 QQWP-----IHDV-------------------NPSVVKQISARKLWDKIVHNAWKSAEPG 270 Query: 561 ITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--- 613 I F D S P + + S+N C EI L C L SINL ++ N Sbjct: 271 ILFWDTILRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSINLYSYVENPFT 326 Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAK 647 F+YD ++ A R++D+++D+ H EK K Sbjct: 327 PQASFNYDLFKKHVQLAQRIMDDIVDLEMEKIDLIMNKIDKDPQLEEVKGAEYHLWEKIK 386 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + + R G+G+ + + + Y + EA + + + ++ +A +SV LA+ERGA Sbjct: 387 RKSSLGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVSVHKTLALNAYRSSVNLAEERGA 446 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + + E ++ + P L + G RN C+ IA Sbjct: 447 FEIYDAN---------------REAKNPFILRIKEADP--ALYADMVKYGRRNIACLTIA 489 Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT T + + + I+P + +Y + ++ V+ V+E+ D ++E ++ K+ Sbjct: 490 PTGTTSIMTQTTSGIEPVFMPVYKRRRKVNPTDKDVHVDFVDEVG--DSFEEYIVYHKKF 547 Query: 827 HD-----GSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + G N D++ ++ ATA ++D + ++ QKW+D + S+ Sbjct: 548 VEWMKINGFDVNKRYSQDEINELVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVT 607 Query: 875 LYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLKGVDGKLNAVP 927 + L + L + +Y +AW G K T Y SRS S KS K + + A P Sbjct: 608 VNLPNDVDESLVNRLYVEAWKSGCKGCTIYRDGSRSGVMISASKSEKKEAEKQGTADP 665 >gi|70915525|ref|XP_732202.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56502850|emb|CAH78399.1| hypothetical protein PC001041.02.0 [Plasmodium chabaudi chabaudi] Length = 182 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 104/168 (61%), Gaps = 7/168 (4%) Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G A L+ + + DF + + L ++ Y RDF ++Y G + L Y L IN IE PQ Sbjct: 17 GRPASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQH 76 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378 MRV++G+ + + EK A+E Y+L+S +F +TPTLFNSGT PQ+SSCFL ++ D Sbjct: 77 LLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKSD 133 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 + GIF L++ A+++K +GG+G +R ++I GTNG S G++P Sbjct: 134 SIEGIFETLKQCALISKTAGGIGVAVQDIRAQNSYIRGTNGISNGLVP 181 >gi|333024021|ref|ZP_08452085.1| putative ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. Tu6071] gi|332743873|gb|EGJ74314.1| putative ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. Tu6071] Length = 921 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 145/588 (24%), Positives = 248/588 (42%), Gaps = 47/588 (7%) Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 Y LL F ++P FN GT PQ +S+CF+ +V D + I +E M+ K G G Sbjct: 93 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAG 151 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460 + + +R + + G + G + F++ A+ +A + GG R+ A L+ H DVE Sbjct: 152 LNLSRIRS-SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 210 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516 F++ + + R D A + DL +T QNA ++ DE + GK Sbjct: 211 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK 267 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + R GE V ++ A +L+RKM + P I + D N Sbjct: 268 -FGL------RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPES 318 Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630 G ++ SN C+E + L+++S CNL S+NL+ N F+ ++ A + + Sbjct: 319 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVIT 373 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +D I EK ++ R +G+G + L Y S +A + Sbjct: 374 AMDISICFADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLM 433 Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746 + A S ELA G Y + + + + V D+ G+ + D + + + W Sbjct: 434 TGTAYRRSAELAAVVGPYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAW 493 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 ++ + + G RN+ +APT TI A C + ++P + K + G + + Sbjct: 494 QDVLRVGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 552 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857 V + +R + E I + H GN+ P LK H F+ I PM + Sbjct: 553 GTVPQALRRLGYQEEQIEAIVAHIAENGNVVDAP-ALKPEHYEVFDCAMGDRAISPMGHV 611 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 + Q WI A S + + E + ++++ IY +AW +G+K R Sbjct: 612 RMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 659 >gi|302522306|ref|ZP_07274648.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB78] gi|302431201|gb|EFL03017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB78] Length = 965 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 145/588 (24%), Positives = 248/588 (42%), Gaps = 47/588 (7%) Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 Y LL F ++P FN GT PQ +S+CF+ +V D + I +E M+ K G G Sbjct: 137 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAG 195 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460 + + +R + + G + G + F++ A+ +A + GG R+ A L+ H DVE Sbjct: 196 LNLSRIRS-SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 254 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516 F++ + + R D A + DL +T QNA ++ DE + GK Sbjct: 255 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK 311 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + R GE V ++ A +L+RKM + P I + D N Sbjct: 312 -FGL------RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPES 362 Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630 G ++ SN C+E + L+++S CNL S+NL+ N F+ ++ A + + Sbjct: 363 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVIT 417 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +D I EK ++ R +G+G + L Y S +A + Sbjct: 418 AMDISICFADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLM 477 Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746 + A S ELA G Y + + + + V D+ G+ + D + + + W Sbjct: 478 TGTAYRRSAELAAVVGPYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAW 537 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 ++ + + G RN+ +APT TI A C + ++P + K + G + + Sbjct: 538 QDVLRVGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 596 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857 V + +R + E I + H GN+ P LK H F+ I PM + Sbjct: 597 GTVPQALRRLGYQEEQIEAIVAHIAENGNVVDAP-ALKPEHYEVFDCAMGDRAISPMGHV 655 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 + Q WI A S + + E + ++++ IY +AW +G+K R Sbjct: 656 RMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 703 >gi|219556406|ref|ZP_03535482.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Mycobacterium tuberculosis T17] Length = 413 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 161/380 (42%), Gaps = 52/380 (13%) Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307 I++ V+ARL + D VY+ A L RD + +L +RY L Sbjct: 64 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123 Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361 H R M R A +A E + E + A F LL + F+ ++PTL NS Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT L+ CF+ + D L IF L + A L + GG G ++ +R G + T G + Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + N Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D F++ V +N L +P K+ ++ Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+ + G P + F D N +P G + ++N C E+ L CN Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389 Query: 602 LGSINLLAHFANNQFDYDKL 621 LGSINL A+ + D+D+L Sbjct: 390 LGSINLARMLADGRVDWDRL 409 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A +R + D TV + + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ Sbjct: 56 RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99 >gi|325270011|ref|ZP_08136619.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM 16608] gi|324987596|gb|EGC19571.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM 16608] Length = 868 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 159/685 (23%), Positives = 290/685 (42%), Gaps = 115/685 (16%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A E ++LL Sbjct: 23 FGGDELAARVWVNKYAVKDSHGNIYEKSPEQMHWRIANEIARIERKYKNPLTAQEVFDLL 82 Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400 F ++ + + G H LS+CF+ + D YG I +E L K GG+ Sbjct: 83 DHFRYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAILHIDEEQVQLMKRRGGV 142 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 143 GHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 201 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + + D FM+ + + ++F I Sbjct: 202 AFIDAKMEEG----KVTGANVSVKLTDEFMQAAIDDRPFV---------------QQFPI 242 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578 D E + +SA ALW K++ +++ P + F D S P + + Sbjct: 243 ---------DSREPMSAKTVSARALWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 293 Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 S+N C EI L C L S+NL ++ + +FD+D + ++ A R+ Sbjct: 294 FQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVIDPFTDHARFDFDLFSRHVQLAQRI 349 Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 +D+++D+ H EK K+ + R G+G+ + Sbjct: 350 MDDIVDLELEKIELIMEKIRRDPQSDEVKQTEYHLWEKIKEKSGKGRRTGVGITAEGDMI 409 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + Y + EA + A ++ +A +SV +A+ERGA++ + F I Sbjct: 410 AAMGLRYGTQEATDFAVSVHRTLALNAYRSSVTMAKERGAFAIYDADREAHNPF----IN 465 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L E +L ++++++ G RN C+ IAPT T + + + I+P + Sbjct: 466 RLREADPQL---------YEDMRR----CGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 512 Query: 788 NLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--WDEAMISDL--KYHDGSI-G 832 +Y + +++ DF V +SF + R W EA D +Y I G Sbjct: 513 PVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTWMEANGIDTRKRYTQEEIDG 572 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891 ++R P ATA ++D + + QKW+D + S+ + L + L + +Y + Sbjct: 573 LVKRSP----YYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNQVDEALVNKLYVE 628 Query: 892 AWLMGLK--TTYYLRSRSATSVEKS 914 AW G K T Y SRS + S Sbjct: 629 AWRSGCKGCTIYRDGSRSGVMISVS 653 >gi|120554013|ref|YP_958364.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinobacter aquaeolei VT8] gi|120323862|gb|ABM18177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinobacter aquaeolei VT8] Length = 712 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 149/635 (23%), Positives = 264/635 (41%), Gaps = 76/635 (11%) Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFL 373 A + RVA LA E + ++K EF L + T H +S C + Sbjct: 42 ATYERVAKALAEVEKKNLRDKYMKEFLWALQNGAIPAGRITSNAGAEAHKPATSTINCTV 101 Query: 374 T-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + T+ D + I E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 102 SGTIQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPRGAYVAGAGATTSGPLSFMDIFD 161 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 V+ G R+GA A + H DV EF+ ++ G R N + I + F++ Sbjct: 162 RMCFTVSSAGGRRGAQMATFDVHHPDVIEFIQAKREDG----RLRQFNLSLLITEDFIEA 217 Query: 493 VTQNAGWTLFSP-------DEVSDLHDLYGKEFEIAYENYERQA-----DRGEI--KVFR 538 V W L P DE DL D + Y ++ Q + G++ ++++ Sbjct: 218 VRNGDDWHLSFPVTQKEADDEGLDLTDAS----QFVYRDFPVQEGYVVNNEGKVACRIYK 273 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A +W ++T ++ P D N + + ++N C E L Sbjct: 274 TVKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPYGS--- 330 Query: 599 VCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL F+Y+K + T R+LDNV++IN + + + Sbjct: 331 -CLLGSVNLTKFVEYPFTEKASFNYEKYRKVVGTFTRMLDNVVEINGLPLGEQRHEITYK 389 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R G+G++G S L +L +PY S E+V+ +E + ++ S+ LA+E+G Sbjct: 390 RRHGMGILGLGSTLAMLRMPYGSDESVKFTEEVVREMAVEGWRQSLALAEEKGPAPIMDD 449 Query: 714 -------------SLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 L + G+ D + G + + M R + + EL ++ G R Sbjct: 450 EFEVTPKMMTKCPKLAEDGIKVGDKVKGKVLHAKYSAYMGRIAEVE-PELVAKLAEKGGR 508 Query: 760 NSNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 ++ +IAPT TI AN S I+PS+ + Y + + + K ++ Sbjct: 509 FTHHTSIAPTGTISLSLAN--NASNGIEPSFSHHYAR-----------NIIREGRKTKEK 555 Query: 816 WDEAMISDLKY-HDGSIGNIERIPDDLKKIHA---TAFEIDPMWLIESASRRQKWIDQ-- 869 D L Y H + G + D+ KK+ + T+ ++ P ++ + QKW+D Sbjct: 556 VDVFSFELLAYRHLVNPGAMPFSEDEDKKLPSYFTTSDDVTPTQHVDIQAAAQKWVDSSI 615 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 +++ N+ + P D IY A+ GLK R Sbjct: 616 SKTANVPTEFPYQDFKD-IYLYAYDKGLKGCTTFR 649 >gi|325860121|ref|ZP_08173247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella denticola CRIS 18C-A] gi|325482406|gb|EGC85413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella denticola CRIS 18C-A] Length = 865 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 157/687 (22%), Positives = 289/687 (42%), Gaps = 119/687 (17%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A E ++LL Sbjct: 20 FGGDELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARIEHKYKNPLAAQEVFDLL 79 Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400 F ++ + H Q LS+CF+ + D YG I +E L K GG+ Sbjct: 80 DHFRYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 140 GHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + I D FM+ + + ++F I Sbjct: 199 AFIDAKMEEG----KVTGANVSVKITDEFMQAAVADRPFV---------------QQFPI 239 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578 D V + +SA LW K++ +++ P + F D S P + + Sbjct: 240 ---------DARAPMVSKTVSAKTLWGKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290 Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 S+N C EI L C L S+NL ++ + FD+D + + A R+ Sbjct: 291 FQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVVDPFTDHAHFDFDLFSRHAQLAQRI 346 Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 +D+++D+ H EK ++ + R G+G+ + Sbjct: 347 MDDIVDLEMEKIDLIMEKIKHDPQSEEVKYAEYHLWEKIREKSGKGRRTGVGITAEGDMI 406 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + Y + EA + + ++ +A ASV +AQERGA+ + + F I Sbjct: 407 AAMGLRYGTQEATDFSVNVHRTLALNAYRASVTMAQERGAFGIYDAKREENNPF----IN 462 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L E +L ++++KK G RN C+ IAPT T + + + I+P + Sbjct: 463 RLKEADAKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH- 845 +Y + ++ + T V+ V+E+ D ++E ++ YH + +E D +K + Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIV----YHHKFLTWMEVNGIDTRKRYT 563 Query: 846 ---------------ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 ATA ++D + + QKW+D + S+ + L ++L + +Y Sbjct: 564 QEEIDGLVKRSPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDEELVNKLY 623 Query: 890 RQAWLMGLK--TTYYLRSRSATSVEKS 914 +AW G K T Y SRS + S Sbjct: 624 VEAWRSGCKGCTIYRDGSRSGVMISVS 650 >gi|15078798|ref|NP_149548.1| 085L [Invertebrate iridescent virus 6] gi|82013365|sp|O55716|RIR1_IIV6 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit; Contains: RecName: Full=IIV-6 RIR1 intein gi|2738400|gb|AAB94427.1| 085L [Invertebrate iridescent virus 6] Length = 959 Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 167/362 (46%), Gaps = 75/362 (20%) Query: 572 PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 P H GV + + C+EI L + S TAVC L S+NL + + D D I+ + Sbjct: 596 PINHAGVFNGILTGQCSEIILPTDSTRTAVCCLSSLNL--EYYDEWKDNDLF---IKDVM 650 Query: 630 RVLDNVIDINCH----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 +LDN + I TI +A S R+IG+G++GF S L +I + S EA ++ + Sbjct: 651 EMLDNALTIFIEKAPPTISRAVNSAKKERSIGIGVLGFHSFLQQKNISFESDEAAKLNID 710 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + + ++ L RG+ P D+ G Sbjct: 711 IFTKLRSKIDTFNLVLGSLRGS--------------PEDAEG------------------ 738 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804 G R MA+APTAT + I G S S++P N Y + +SG F N Sbjct: 739 ----------TGRRFCCTMAVAPTATSSIIMGNTSPSVEPFRANAYRQDTLSGSFLNKNR 788 Query: 805 FLVNELKQR-------DLWDEAMISDLKYHDGSIGNIERIPDDL-----KKIHATAFEID 852 +L L QR ++W + + G+++++P++L K++ TAFEI+ Sbjct: 789 YLSRILSQRLNVKEINEVWSNIV--------SNGGSVQQLPNNLLSEQEKQVFKTAFEIN 840 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSV 911 W+I+ A+ RQK+IDQ+QS+NL+L K+ L ++ AW GLKT YYLRS Sbjct: 841 QKWVIKHAADRQKYIDQSQSINLFLKPDIHKRELHSLHLNAWKSGLKTLYYLRSEKIADA 900 Query: 912 EK 913 +K Sbjct: 901 DK 902 Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 122/307 (39%), Gaps = 54/307 (17%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD F+ LGL+ L + Y + S PQ F V + ++ Y S Sbjct: 10 RDSKFDELGLKRLRESYMMREETS----PQERFAYVCKQVGTDRDHSQR----LYEYTSK 61 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 STP L H SC+L+ + D G+ L E L+ G Sbjct: 62 HWLSLSTPILSFGKANHGLPISCYLSWIEDTKEGLIDTLSEVNQLSMLGG--------GV 113 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+G I ++ KS GV+ L + ++A Q G R+G+ YL H DV +F+++RK Sbjct: 114 GVGVGIRTSDNKSTGVMSHLNTYDACSLAYKQDGVRRGSYAMYLNNNHPDVLQFIEMRKP 173 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAG-------WTLFSPDEVSDLHDLYGKEFEIA 521 TGD R +++ I D FM+ + + G W L P Sbjct: 174 TGDHNIRCLNLHHGLNISDEFMELIEKCDGGGNIDDTWNLIDP----------------- 216 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV- 578 K + A LW+++L +TG P+I F D CN + Q+ G+ Sbjct: 217 -----------HTKKITTVGARDLWQRILETRMKTGEPYICFIDTCNKHMYDFQKKKGLT 265 Query: 579 VHSSNLC 585 + SNLC Sbjct: 266 IKQSNLC 272 >gi|60683069|ref|YP_213213.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343] gi|60494503|emb|CAH09300.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343] gi|301164584|emb|CBW24143.1| putative ribonucleoside reductase [Bacteroides fragilis 638R] Length = 882 Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 147/644 (22%), Positives = 265/644 (41%), Gaps = 105/644 (16%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLA 394 + + L F ++ S T + + LS+CF+ + D YG I +E L Sbjct: 108 QLFELFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLM 167 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 168 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 226 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + + D FM + +T P Sbjct: 227 KHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYP---------- 272 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 D ++I A LW+K++ +++ P + F D S P Sbjct: 273 --------------IDSDHPTTVKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPD 318 Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + + S+N C EI L C L +INL ++ N FD+D + Sbjct: 319 CYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFDLFHKHV 374 Query: 626 RTAVRVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLM 661 A R++D++ID+ IE+ ++ HT R + G+G+ Sbjct: 375 ALAQRIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGIT 434 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L + Y + EA E +++ + ++ A +SV++A+ERGA+ + F Sbjct: 435 AEGDMLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYDSEREKNNPF 494 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 I L E L ++++KK G RN C+ IAPT T + + + Sbjct: 495 ----INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSG 537 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIG 832 I+P + +Y + ++ + T V V+E D ++E ++ K+ +D + Sbjct: 538 IEPVFLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKR 595 Query: 833 NIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 + D+L AT+ ++D + + + QKW+D + S+ + L ++L + Sbjct: 596 YTQEEIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNR 655 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +Y +AW G K R S + V S D K P P Sbjct: 656 LYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 699 >gi|322372257|ref|ZP_08046798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Haladaptatus paucihalophilus DX253] gi|320548266|gb|EFW89939.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Haladaptatus paucihalophilus DX253] Length = 1028 Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 154/673 (22%), Positives = 261/673 (38%), Gaps = 147/673 (21%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 EF +L+ F+ ++PTL N+G QLS+CF+ + DD+ I +E A + + GG+ Sbjct: 148 EFGDLMEGLSFIPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKEAAEVFQSGGGM 207 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G + +R G + T G + G I F++ + + QGG R+GA + H DV Sbjct: 208 GYAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVI 267 Query: 461 EFL-----------DLRKNTGDDRRRTH-------------------------------D 478 +F+ LR N DD T + Sbjct: 268 QFIHAKNKDVSLANTLRLNDPDDYTHTSFKEALEEARELIDDDGRVPKHLRNAAEGHLSN 327 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYENYERQA 529 N + + D FM+ + + + +P + +++D++G + Sbjct: 328 FNISVGVTDDFMEALYNDEEFVFTNPRTEEPHVATEHTKEMYDMFGLGDYVT-------- 379 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--------S 581 GE+ I A LW +++ +E G P I + + N +QH V + Sbjct: 380 -PGEV---LSIPAKVLWDRIVEGAWENGEPGIIYLERVN----KQHSFDVEKHPDHRILA 431 Query: 582 SNLCTEITLNSSSEETAVCNLGSINL----------------------------LAHFAN 613 +N C E L EE CNLG INL + F Sbjct: 432 TNPCGEQPL----EEYEACNLGHINLSTLADLDAPDWRVWYDENGDNYGSLSEAVDAFLR 487 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D+++ I R L+NV+ ++ +EK ++ R IGLG+MG L + Sbjct: 488 EGIDWEEFDHRIEYGTRFLENVVTMSDFPVEKIEQKVRDMRKIGLGIMGLAQLYIQLGVR 547 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S E EIA + M I+ + AS ELA+ERG+++ ++ S + Sbjct: 548 YGSEEGNEIAKQLMTHINHESKWASHELAEERGSFNDWEDSKY----------------- 590 Query: 734 DELAMNRTSRLPWDE------LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 N T W E +K +RN N IAPT T + + + +P Y Sbjct: 591 ----ANPTEYAEWFEKQTGLDAEKWKDGFAVRNHNTTTIAPTGTTSMVGNTTGGCEPIYN 646 Query: 788 NLYVKS---NMSGDFTVV--NSFLVNELKQRDL-----WDEAMISDLKYHDGSIGNIERI 837 Y K+ ++ GD +V + + + L+ D+ +EA + +E + Sbjct: 647 VAYYKNVSDDVQGDEMLVEFDDYFLRTLEANDIDVDAVKEEAQTQMANNEFSGVEGLETV 706 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896 PD + ++ ++ Q+ +D A S + + S + +D +YR + G Sbjct: 707 PDAIGELFVVTGDLTGKQHAAVQCSCQQGVDSAISKTCNFPNSASKEDMDEVYRYIYDHG 766 Query: 897 LK--TTYYLRSRS 907 K T Y +RS Sbjct: 767 GKGVTVYRDGTRS 779 >gi|88800235|ref|ZP_01115803.1| hypothetical protein MED297_14097 [Reinekea sp. MED297] gi|88777081|gb|EAR08288.1| hypothetical protein MED297_14097 [Reinekea sp. MED297] Length = 716 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 150/633 (23%), Positives = 265/633 (41%), Gaps = 69/633 (10%) Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGT--RHPQLSSCFL 373 +A F RVA L+ E K K+ L + + + + N+G P S+ Sbjct: 44 EATFARVAEALSSVEKNKAKKKEWHEKFLWALENGAIPAGRIVSNAGALEHKPATSTINC 103 Query: 374 T---TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 T T+ D + GI + E + K G+G +++ +R A + G + G + F+ + Sbjct: 104 TVSGTIEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKNAFVSGAGAYTSGPLSFMDI 163 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + V+ G R+GA A + H DV +F+ ++ G R N + I FM Sbjct: 164 YDKMCFTVSSAGGRRGAQMATFDVSHPDVVDFIRAKREDG----RLRQFNLSLLITMEFM 219 Query: 491 KRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYE-----RQADRGEI--KVFRK 539 + V + W L P + + D D+ E ++ ++++ Q D+GEI +V+R Sbjct: 220 EAVKNDTDWPLVFPVSEAEVLRDGLDVNNPE-QVIWKDWHVKDPYLQNDKGEIACRVYRI 278 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LW ++T ++ P D N + + ++N C E L Sbjct: 279 IKARNLWNVIMTSTYDYAEPGFILIDKVNEYNNNWFCETIRATNPCGEQPLPPYGS---- 334 Query: 600 CNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 C LGS+NL N +F++DK +R R+LDNV++IN + + + R Sbjct: 335 CLLGSVNLTRFVEDPFTENAKFNWDKFHEVVRIFTRMLDNVVEINGLPLPEQRDEITRKR 394 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--- 711 G+G +G S + +L + Y +V +E + ++ +++LA+E+G Sbjct: 395 RHGMGYLGLGSTITMLRMKYGDEASVAFTEEVTKAMALAGWETALDLAKEKGPAPIMEEE 454 Query: 712 ----------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 + L G D + G + + M + + + EL + +G R Sbjct: 455 FEITHEMVRKRPELLKDGYQVGDKLPGRILHAKYSRYMQQINDIA-PELVDELAKVGARF 513 Query: 761 SNCMAIAPTATIA-NIC-GVSQSIDPSYQNLYVKSNMSGDFTV---VNSFLVNELKQRDL 815 ++ +IAPT TI+ +I S I+PS+ + Y ++ + V+ F L R L Sbjct: 514 THHSSIAPTGTISLSIANNASNGIEPSFAHHYSRNVIRAGKKSKEKVDVFSFELLAYRKL 573 Query: 816 W-DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 D+AM Y D ++PD T+ ++P ++ + Q WID S++ Sbjct: 574 VNDKAM----PYSDEPEA---QLPD----YFITSDSVEPKQHVDIQAASQIWID--SSIS 620 Query: 875 LYLDEPSGKKLDF---IYRQAWLMGLKTTYYLR 904 + P+ D IY A+ GLK R Sbjct: 621 KTANVPTDYAFDSFKDIYLYAYEQGLKGCTTFR 653 >gi|254482169|ref|ZP_05095410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [marine gamma proteobacterium HTCC2148] gi|214037494|gb|EEB78160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [marine gamma proteobacterium HTCC2148] Length = 707 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 139/621 (22%), Positives = 261/621 (42%), Gaps = 67/621 (10%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 ++ D + GI E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 110 SITDSMEGILQKNLEAGLTLKAGCGIGYEFSTLRPRGAFVSGAGAYTSGPMSFMDIFDKM 169 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV +F+ ++ G R N + I + F+ V Sbjct: 170 CFTVSSAGGRRGAQMATFDVHHPDVFDFVKAKREDG----RLRQFNLSLLITEDFINAVK 225 Query: 495 QNAGWTL---FSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 ++ W L +P E ++L ++ + F + + + +V+++I A+ LW Sbjct: 226 EDGEWPLSFPVTPKEFANLELDPEQEVVWRSFPVTDGYVTNEQGQVACRVYQRIRAIKLW 285 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +++ ++ P D N ++ V ++N C E L C LGS+N Sbjct: 286 NAIMSSTYDYAEPGFILIDEVNKKNNNWFCENVRATNPCGEQPLPPYGS----CLLGSVN 341 Query: 607 LLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L F + FD+++ + R+LDNV++IN +E+ ++ + R G+G + Sbjct: 342 LTRFVREPFTDKAHFDWEEYREVVAVFTRMLDNVVEINGLPLEQQRQEITSKRRHGMGFL 401 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGS 714 G S L +L + Y +++E +E + ++ ++LA+E+GA + Sbjct: 402 GLGSTLTMLQMKYGEEDSLEFTEEVSKQMAVSGWKIGLDLAREKGAAPIMDEEFEVTGEM 461 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRVKTIGMRNSNCMAIAP 768 L + D I L ++ ++ ++ S L EL + G R ++ +IAP Sbjct: 462 LRRRPEMAADGIKLGDKLPGKVLHSKYSHYMQALALEEPELVNSIIQEGARFTHHSSIAP 521 Query: 769 TATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ-RDLWDEAMISD 823 T TI AN S I+PS+ + Y ++ ++ E K+ ++ D Sbjct: 522 TGTISLSLAN--NASNGIEPSFAHHYSRN------------VIREGKKSKEKVDVFSFEL 567 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAF----EIDPMWLIESASRRQKWIDQ--AQSLNLYL 877 L Y + G+ + DD K F + P ++ S QKW+D ++++N+ Sbjct: 568 LAYRELVNGDAMPLTDDESKKLPDYFIASDNVTPRQHVDVQSAAQKWVDSSISKTINVPT 627 Query: 878 DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV----EKSTLKGVDGKLNAVPVTDP 931 D P D Y A GLK TT+ ++ V E + L P + Sbjct: 628 DCPYEDFKD-TYLYAAEQGLKGCTTFRFIPEASQGVLMKEEDWRTLTISSPLRMAPRLN- 685 Query: 932 NSSTHSLGIPSSCTSDTECEV 952 + +T L + CT C + Sbjct: 686 SRATKKLSMTGRCTPQPTCSM 706 >gi|319442629|ref|ZP_07991785.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium variabile DSM 44702] Length = 395 Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 15/307 (4%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F+ +LG Y Y L +G R +E + VA+GLA + A Sbjct: 98 YAKKFRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMVALGLADGDA---ALASHLV 154 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT N G + + SCFL + D++ I ++ L+K GG+ Sbjct: 155 DEIIDGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 214 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 215 LLSNIREVGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 274 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F Sbjct: 275 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERIYGKPFADVS 331 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E+YE + I+ KI+A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 332 VTEHYEEMVEDPRIRK-SKINARQFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GRIT 388 Query: 581 SSNLCTE 587 SNLC+E Sbjct: 389 HSNLCSE 395 >gi|329113328|ref|ZP_08242109.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter pomorum DM001] gi|326697153|gb|EGE48813.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter pomorum DM001] Length = 352 Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 111/354 (31%), Positives = 167/354 (47%), Gaps = 59/354 (16%) Query: 568 NIRSPQQH--VGV-VHSSNLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYD 619 N P+ H G+ V +SNLC+EITL + + TAVC L S+NL ++ Sbjct: 2 NNARPEHHKLAGLEVKTSNLCSEITLPTGIDHHGKARTAVCCLSSLNL-----ETWDEWK 56 Query: 620 KLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 I + LDNV ID + +AK + R++GLG+MGF + L ++P+ Sbjct: 57 DNPQFIEDVMLFLDNVLQDFIDRAPEDMHRAKYAAMRERSVGLGVMGFHTFLQSRNVPFE 116 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S A + + I A +AS +LA+ RG + + GV Sbjct: 117 SVIAKVWNRKIFKHIREQADAASRKLAELRGPCPDAE----EYGVME------------- 159 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794 R SN MAIAPTA+I+ I G S I+P N++++ Sbjct: 160 -----------------------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKT 196 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG FTV N L L+++ + S + GS+ +++ + K + TAFE+D Sbjct: 197 LSGSFTVRNRHLQKLLEEKGQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQR 256 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907 W++E A+ RQ +I QAQS+NL+L K+ L I+ AW GLK+ YY RS S Sbjct: 257 WIVEHAADRQPFICQAQSVNLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLS 310 >gi|313159184|gb|EFR58557.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alistipes sp. HGB5] Length = 851 Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 148/617 (23%), Positives = 256/617 (41%), Gaps = 103/617 (16%) Query: 341 EFYNLLSSFHFMCSTP---TLFNSGTRHPQLSSCFLT--TVPDDLYG-IFGALQENAMLA 394 E + LL F ++ T + + LS+CF+ P D YG IF +E L Sbjct: 80 EVFELLDHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLM 139 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ L Sbjct: 140 KRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSLSI 198 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + +TG + N + I D FM+ Y Sbjct: 199 KHPDAERFIDAKVDTG----KVTGANVSIKIDDEFMRAAIAGKK---------------Y 239 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 ++F I ++ + + D I A LW K++ +++ P + F D S P Sbjct: 240 HQQFPIKSDHPKYEQD---------IDAKKLWDKIIHNAWKSAEPGVLFWDTIIRESVPD 290 Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + V S+N C EI L C L ++NLL++ N +F++D+ + + Sbjct: 291 CYADEGFVTVSTNPCGEIPLCPYDS----CRLLAMNLLSYVDNPFTKEAKFNFDRFKAHV 346 Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661 A+R++D++ID+ +E K + R GLG+ Sbjct: 347 GKAMRMMDDIIDLELEKVEQIIAKIAADPEDEEVRRVELELWKKIRTMAQKGRRTGLGIT 406 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L + Y S EA+ A E + ++ A ASV +A +RGA+ + S Sbjct: 407 AEGDMLAALGLLYGSDEAIAFAVEVQKTLAVEAYRASVRMAAQRGAFPIYDASKEKNNP- 465 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 ++A +R+ EL ++ G RN + IAPT T + + + Sbjct: 466 ------MIARIREADP----------ELYAEMEKNGRRNIAMLTIAPTGTTSLMSQTTSG 509 Query: 782 IDPSYQNLYV---KSNMSGDFTVVN--SFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 I+P ++ +Y K N S T V+ + ++ +++ + L + +E Sbjct: 510 IEPVFRTVYKRRRKINPSDHDTHVDYEDETGEKFQEYNVYHHNFVKWLDANGYDTSKLET 569 Query: 837 IPD-DLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 I D +L + ATA +ID + ++ QKW+D + S+ + L + L Sbjct: 570 ISDAELNEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSEALVAD 629 Query: 888 IYRQAWLMGLKTTYYLR 904 +YR AW G K R Sbjct: 630 VYRTAWECGCKGVTVYR 646 >gi|253566262|ref|ZP_04843716.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp. 3_2_5] gi|265766962|ref|ZP_06094791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 2_1_16] gi|251945366|gb|EES85804.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp. 3_2_5] gi|263253339|gb|EEZ24815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacteroides sp. 2_1_16] Length = 847 Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 157/700 (22%), Positives = 288/700 (41%), Gaps = 109/700 (15%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + + + + Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 L F ++ S T + + LS+CF+ + D YG I +E L K G Sbjct: 77 LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM + +T P Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYP-------------- 237 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577 D ++I A LW+K++ +++ P + F D S P + Sbjct: 238 ----------IDSDHPTTVKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287 Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 288 LGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFDLFHKHVALAQ 343 Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665 R++D++ID+ IE+ ++ HT R + G+G+ Sbjct: 344 RIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGD 403 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L L + Y + EA E +++ + ++ A +SV++A+ERGA+ + F Sbjct: 404 MLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYDSEREKNNPF---- 459 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 I L E L ++++KK G RN C+ IAPT T + + + I+P Sbjct: 460 INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506 Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836 + +Y + ++ + T V V+E D ++E ++ K+ +D + + Sbjct: 507 FLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKRYTQE 564 Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891 D+L AT+ ++D + + + QKW+D + S+ + L ++L + +Y + Sbjct: 565 EIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLYVE 624 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 AW G K R S + V S D K P P Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 664 >gi|118197661|ref|YP_874054.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40] gi|116266352|gb|ABJ91435.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40] Length = 797 Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 132/550 (24%), Positives = 230/550 (41%), Gaps = 101/550 (18%) Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNL---------LSSFHFMCSTP-------TLFN 360 P F+RVA+ +AL KR +E Y L SF ++ +T + N Sbjct: 118 PYHTFVRVALAVALVNARYSKR-LEKYGLDAFKTFVDDFLSFFYILATGRSTGAGRVMSN 176 Query: 361 SGTR----HPQLSSC-FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 +G++ + L +C + +PD ++GI L E ++ K G G D++ +R GA +H Sbjct: 177 AGSKLYKTYTTLINCTVMRQIPDSMHGIMETLTEASLTLKAGAGTGYDFSSIRPKGAFVH 236 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 G ++ GV+ F ++ + + G R+GA ++ H + + ++N G R Sbjct: 237 GAGAETSGVVSFAEIFDKMCSTIMSAGGRRGAQMLVIDVRHPESIDLFMAKRNDGVLRY- 295 Query: 476 THDMNTANWIPDLFMKRVTQNAG-----WTL---FSPDEVSDLHD--------------- 512 N + P+ M++V + WT F+P EV + + Sbjct: 296 ---FNISLLFPNSLMEKVKNDEEFEQWFWTFEMTFTPSEVIEKNGNNVFFIGDKEVVIVE 352 Query: 513 --------------LYGKEFEI-AYENYERQADRGEIK-VFRKISAVALWRKMLTMLFET 556 +G++ ++ YEN+ + R K VF+++ A ++ ++ ++ Sbjct: 353 NGKLPYEYEEYDYFAFGEDHQVMKYENFGKDKYRIYKKEVFKRVRAREIYDIVMQSTYDY 412 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--- 613 P I F D N ++ + + ++N C E L CNLGSI L F Sbjct: 413 AEPGIIFIDNVNNKNVLKGKEYIRATNPCGEQPLPPYGS----CNLGSI-FLHRFVKEPF 467 Query: 614 -------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 FD+DKL R R LD V DI + + K++ T R GLG+ G Sbjct: 468 NYDLKPEENFDFDKLFEVSRLMNRFLDFVNDITNLPLVQLKEAAFTKRRHGLGISGIADT 527 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS 725 L ++ + Y S EA + ++ M I + +V +A G A W +D Sbjct: 528 LIMVGLRYGSEEAAKFLEKIMYTIQLASAVENVRMADIYGPAPVGVTLKEW------VDV 581 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSID 783 G L E +E+ +LP +R S+ ++IAPT TI+ G V+ I+ Sbjct: 582 FGHLKEKLEEIYGEDFYKLP------------LRYSHAISIAPTGTISLTFGNNVANGIE 629 Query: 784 PSYQNLYVKS 793 P++ Y+++ Sbjct: 630 PTFALSYMRN 639 >gi|258646860|ref|ZP_05734329.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dialister invisus DSM 15470] gi|260404299|gb|EEW97846.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dialister invisus DSM 15470] Length = 622 Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 152/612 (24%), Positives = 258/612 (42%), Gaps = 98/612 (16%) Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP---QLSSCFL 373 PQ F RV+ E+ K+ ++ F + TL+ +G+R +S+C++ Sbjct: 26 PQQFIDRVSSVFKGDFRERMKK------YITDGDFSPAGRTLYAAGSRGKFKVSMSNCYI 79 Query: 374 TTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P+D L IF + E A + Y GG+G + + +R G+ +H S G + F+K+ N Sbjct: 80 LPSPEDNLESIFHSNYEIARIFSYGGGIGINISNLRPAGSRVHNVARTSTGAVSFMKIFN 139 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T ++Q G R+GA L H D+ EFL +++N + MN + D FM+ Sbjct: 140 TTGEVISQNG-RRGAQMVGLNCSHPDIYEFLHIKQN----EEKLSSMNISILFTDEFMEA 194 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + +TL H E EN ER I A +R+ Sbjct: 195 VRDDKEYTL-------RFH------VESTGENIERT-----------IRARDFFREFCET 230 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGV------VHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ G P F D N H+ + +N C E N+ + CNLGSIN Sbjct: 231 QWDWGDPGALFSDRLN----DYHLLAGYDEYQIEITNPCGEFGGNAYN----ACNLGSIN 282 Query: 607 LLA----HFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNHTHRAIGLG 659 L F N + +K + + LD ++ T +++ + R++GLG Sbjct: 283 LYNMIDDKFGNAPSLNEEKFKQAVYDGIIALDEIVSYGYETQPLDENRTCIDDWRSLGLG 342 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 L G AL + + Y S EA + M+ + A+ +S + A+ +G + ++ ++ Sbjct: 343 LFGVADALVAMKLAYGSREASAFMENVMKIMLLSALRSSCDRAKMKGTFGRYRREATEKS 402 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-V 778 PI I ++ E+ L + ++T G+RN +AIAPT TI+ + G Sbjct: 403 --PI--IQMVKELDGGLYED-------------IRTYGLRNGTLLAIAPTGTISLLMGSF 445 Query: 779 SQSIDPSYQNLYVKSN-----MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 S +P Y+ Y +S ++G F V + + L+ R L L D I Sbjct: 446 SGGCEPLYKISYERSTHKMEEVNGSFRVYAHSVKDLLRYRHL-------PLTLTDDEI-- 496 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 E+ P ++ H +F M + + QK++D + S + L ++ + + + IY A Sbjct: 497 REKFPWVIES-HDVSF----MDRVAMQAVMQKYVDNSISSTVNLKNDATPEDIYDIYLAA 551 Query: 893 WLMGLKTTYYLR 904 W G K R Sbjct: 552 WESGCKGITVFR 563 >gi|304382861|ref|ZP_07365344.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973] gi|304336046|gb|EFM02293.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973] Length = 855 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 158/693 (22%), Positives = 289/693 (41%), Gaps = 113/693 (16%) Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333 +D Y A+ LKY F + L ++ ++Y + + I + P+ R+A +A E Sbjct: 9 YDEAYKAS-LKY---FEGDELAARVWVNKYAMKDSFGNIYEQSPENMHWRIANEIARIEN 64 Query: 334 EKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFG 385 + +A E ++LL F ++ + + G H LS+CF+ + D YG I Sbjct: 65 KYANPLKAEEVFSLLDHFRYIVPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAIMR 124 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +E L K GG+G+D + VR G+ ++ + S G++PF++ +++ V Q G R+ Sbjct: 125 IDEEQVQLMKRRGGVGHDLSHVRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RR 183 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA+ + H D E F+D + G + N + + D FM+ Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAIDGRP------- 232 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 Y ++F IA +N V ++I A +LW+K++ +++ P + F D Sbjct: 233 --------YRQQFPIAGDN---------PMVSKEIDARSLWQKIVHNAWQSAEPGVLFWD 275 Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616 S P + + S+N C EI L C L SINL ++ + +F Sbjct: 276 TILRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSINLFSYVIDPFTDHARF 331 Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652 D+D + A R++D+++D+ H EK K + Sbjct: 332 DFDTFKKHVGMAQRLMDDIVDLELEKIDAIMNKVQDDPQSGEVKGAEYHLWEKIKDKSSK 391 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R G+G+ L + + Y + EA + E + ++ A +S +A+ERGA++ + Sbjct: 392 GRRTGVGITAEGDMLAAMGLRYGTEEATAFSVEVHKTLALSAYRSSAIMAKERGAFAVYD 451 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 E ++ + P EL + + G RN C+ IAPT T Sbjct: 452 AQ---------------REAKNPFVLRLKEADP--ELYELMVKYGRRNIACLTIAPTGTT 494 Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---- 827 + + + I+P + +Y + ++ T V+ V+E+ D ++E ++ K+ Sbjct: 495 SLMTQTTSGIEPVFMPVYKRRRKVNPSDTNVHIDFVDEVG--DSFEEYIVYHPKFMQWMK 552 Query: 828 -DGSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 +G D++ + ATA ++D + + QKW+D + S+ + L Sbjct: 553 TNGYDTEKRYTQDEIDALVAKSPYNKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPN 612 Query: 880 PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911 + L + +Y +AW G K R S V Sbjct: 613 DVDEALVNRLYVEAWRSGCKGCTIYRDGSRAGV 645 >gi|222480783|ref|YP_002567020.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorubrum lacusprofundi ATCC 49239] gi|222453685|gb|ACM57950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorubrum lacusprofundi ATCC 49239] Length = 1056 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 152/669 (22%), Positives = 264/669 (39%), Gaps = 129/669 (19%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A F + + S FM ++PTL N+G QLS+CF+ + DD+ I +E A + + Sbjct: 142 EATADRFRDGMESLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAEVFQ 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + +R G + T G + G I F++ + + QGG R+GA + Sbjct: 202 SGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVS 261 Query: 456 HIDVEEFL-----------DLRKNTGDD-------------------------------R 473 H DV +F+ LR N DD Sbjct: 262 HPDVIQFIHSKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDEDGKVPEHLRNAVE 321 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYEN 524 + N + + D FM+ + + +T +P E +++D++G Sbjct: 322 GHLSNFNISVGVTDDFMEALYNDEEFTFTNPRTEEPHIATPETKEIYDMFGL-------- 373 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVGVVH 580 + E+ I A LW M+ E G P + + + N + + + Sbjct: 374 ----GEHVEVGEVLSIPADELWDDMIEGAHENGEPGVIYLERVNKEHSFDTKEHPDHRIL 429 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINL----------------------------LAHFA 612 ++N C E L EE CNLG INL ++ F Sbjct: 430 ATNPCGEQPL----EEYEACNLGHINLSTLAAQDAPDWRVWSDEHADEYDTEEAAMSAFL 485 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+++ I R L+NV+ ++ +EK ++ R IGLG+MG L I Sbjct: 486 EEAIDFEEFDERIDYGTRFLENVVTMSDFPVEKIEQKVRDMRKIGLGVMGLAQLYIQLGI 545 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y + E+A + M I+ + S ELA ERG ++ ++ S + E Sbjct: 546 QYGTEPGNEVARQLMTHINHASKQTSHELATERGTFNDWEESKYANPT----------EY 595 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 RD + L DE + +RN N IAPT T + I + +P Y Y K Sbjct: 596 RD--WFEHYTGLDADEWEDGFP---IRNHNTTTIAPTGTTSMIGNTTGGCEPIYNVAYYK 650 Query: 793 S---NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDL 841 + ++ GD +V + + + L++ D+ +A+ + + DG G +E +PD + Sbjct: 651 NVSDDVQGDEMLVEFDDYFLRTLEENDVDVDAVKQEAQEQMATNEFDGVDG-LETVPDAI 709 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK-- 898 ++ ++ Q+ +D A S + ++ + ++++ +YR + G K Sbjct: 710 GELFVVTGDLSGKQHASVQCACQEGVDSAISKTCNFPNDATAEEMEEVYRYIYDHGGKGV 769 Query: 899 TTYYLRSRS 907 T Y +RS Sbjct: 770 TVYRDGTRS 778 >gi|293572391|ref|ZP_06683372.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Enterococcus faecium E980] gi|291607540|gb|EFF36881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Enterococcus faecium E980] Length = 827 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 112/428 (26%), Positives = 188/428 (43%), Gaps = 45/428 (10%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 ++K+ + I A LW + + P I F D N + Q G V ++N C E L Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472 Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 AVCNL +INL A+ + + D++KLA +R +VR DNVID + EK ++ Sbjct: 473 P----YAVCNLAAINL-ANMVDKETKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQ 527 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R +GLG+MG L Y S + + D+ E I+ A SVELA+E+G++ Sbjct: 528 QAKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSF 587 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G ++ A + + ++P + +++ + G+RNS+ + +AP Sbjct: 588 PFLVGKTVEETT---------ALRQRFIESGYMKKMP-ESIRQAILKYGIRNSHLLTVAP 637 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T + + GVS ++P + Y +S G F VN+ +V+E ++ Sbjct: 638 TGSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK--------------- 682 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 N E D+L +A E+ P + Q+W+D + S + E K++ Sbjct: 683 ----NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVDSSISKTVNAPKEYQVKQVAA 738 Query: 888 IYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 IY + G K T Y SR + + TL+ D PV ++ +L S Sbjct: 739 IYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVVNNQITLDSLESSE 794 Query: 946 SDTECEVC 953 ++ C +C Sbjct: 795 AEEICPIC 802 Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352 +I R +IN +E P + +F ++A +A + + E EK+A EFY L+ + + Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160 Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + L+ +GT +C++ + D G+ QE + GG+G + + +R Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 A +HG NGKS G + +L + V QGG R+GA L WH D+ EF+ Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273 >gi|218128620|ref|ZP_03457424.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697] gi|217989222|gb|EEC55536.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697] Length = 587 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 132/546 (24%), Positives = 230/546 (42%), Gaps = 95/546 (17%) Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344 R F + L ++ ++Y + + I + P+ R+A +A E + + E + Sbjct: 17 RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALSSEELFG 76 Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398 L + F ++ S T + + LS+CF+ V D YG IF +E L K G Sbjct: 77 LFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+D + +R G+ + + S G++PF++ +++ V Q G R+GA+ + H D Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 E F+D + G + N + + D FM+ + P + +D Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKPYVQQYPIDATD--------- 242 Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576 VF+K I+A LW+K++ +++ P + F D S P + Sbjct: 243 ----------------PVFKKEINATDLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYA 286 Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628 + + S+N C EI L C L +INL ++ N FD+D + A Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALA 342 Query: 629 VRVLDNVIDINCHTIEK----------AKKSNHTH--------------RAIGLGLMGFQ 664 R++D++ID+ IE+ ++ HT R G+G+ Sbjct: 343 QRIMDDIIDLELEKIERIMAKIDADPESEDVKHTESVLWQKIYKKSGQGRRTGVGITAEG 402 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L + Y + EA E A++ + ++ A +SV +A+ERGA+ + F Sbjct: 403 DMLAALGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKERGAFEVYDSEREKNNPF--- 459 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 I L E EL ++E+KK G RN C+ IAPT T + + + I+P Sbjct: 460 -INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505 Query: 785 SYQNLY 790 + +Y Sbjct: 506 VFLPVY 511 >gi|53715111|ref|YP_101103.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides fragilis YCH46] gi|52217976|dbj|BAD50569.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides fragilis YCH46] Length = 798 Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 147/644 (22%), Positives = 265/644 (41%), Gaps = 105/644 (16%) Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLA 394 + + L F ++ S T + + LS+CF+ + D YG I +E L Sbjct: 24 QLFELFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLM 83 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG+G+D + +R G+ + + S G++PF++ +++ V Q G+R GA+ + Sbjct: 84 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 142 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D E F+D + G + N + + D FM + +T P Sbjct: 143 KHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYP---------- 188 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573 D ++I A LW+K++ +++ P + F D S P Sbjct: 189 --------------IDSDHPTTVKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPD 234 Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 + + + S+N C EI L C L +INL ++ N FD+D + Sbjct: 235 CYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFDLFHKHV 290 Query: 626 RTAVRVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLM 661 A R++D++ID+ IE+ ++ HT R + G+G+ Sbjct: 291 ALAQRIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGIT 350 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 L L + Y + EA E +++ + ++ A +SV++A+ERGA+ + F Sbjct: 351 AEGDMLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYDSEREKNNPF 410 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 I L E L ++++KK G RN C+ IAPT T + + + Sbjct: 411 ----INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSG 453 Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIG 832 I+P + +Y + ++ + T V V+E D ++E ++ K+ +D + Sbjct: 454 IEPVFLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKR 511 Query: 833 NIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887 + D+L AT+ ++D + + + QKW+D + S+ + L ++L + Sbjct: 512 YTQEEIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNR 571 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +Y +AW G K R S + V S D K P P Sbjct: 572 LYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 615 >gi|314922993|gb|EFS86824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL001PA1] Length = 950 Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 144/604 (23%), Positives = 242/604 (40%), Gaps = 85/604 (14%) Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 LL +F ++P FN GT PQ +S+CF+ +V D + I +E + K G G + Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462 + +R + + G + G + F++ A+ +A + GG R+ A L+ H D+EEF Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245 Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503 ++ + D R D N + + D FM V Q + L S Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 E KV + A L+ K+ +E P + + Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621 D N + G +++SN C+E ++L++SS CNL S+NLL N+ FD +K Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 I + +D I E K+ R +G+G + L L + Y S Sbjct: 395 TRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734 +A ++ + S ELA G YS + + P ++ +A+ RD Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYSGYA-----ENAEPHQAV--MAKHRDANRQVHP 507 Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789 + A+ ++ WD++ K T G RN+ +APT TI + + I+P + + Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567 Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 K + G +VN + LK E + Y + G++ P DL + H Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625 Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900 F+ I PM + + Q ++ A S + L E S + + +Y + W +GLK Sbjct: 626 FDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKAL 685 Query: 901 YYLR 904 R Sbjct: 686 AVYR 689 >gi|319788201|ref|YP_004147676.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudoxanthomonas suwonensis 11-1] gi|317466713|gb|ADV28445.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudoxanthomonas suwonensis 11-1] Length = 718 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 150/638 (23%), Positives = 266/638 (41%), Gaps = 78/638 (12%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRH--PQLSSCFLT-- 374 + RVA LA E +EKR + L + + + N+G + P S+ T Sbjct: 50 YQRVARALADAEQTEEKRTYWYERFLWALRRGAIPAGRITSNAGAQEHKPATSTINCTVS 109 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GI + E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 110 GTIGDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPRGAFVAGAGAYTSGPMSFMDIFDK 169 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV++F+ ++ G R N + I D FM+ V Sbjct: 170 MCFTVSSAGGRRGAQMGTFDVSHPDVKDFIRAKREDG----RLRQFNLSLLITDGFMEAV 225 Query: 494 TQNAGWTLFSP---DEVSDLHDLYGKEFEI-----AYENYERQADRGEI--KVFRKISAV 543 + W L P E +D+ DL + + A+++ D G + K++ I A Sbjct: 226 DADGDWPLVFPVNRKEEADI-DLSNADQVVWRDWPAHDDAYIVRDDGMVACKIYGHIKAR 284 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW ++ ++ P D N + + ++N C E L C LG Sbjct: 285 HLWEMIMVSTYDYAEPGFILIDRVNEMNNNWWCENIRATNPCGEQPLPP----YGACLLG 340 Query: 604 SINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 S+NL + FD+++ +R R+LDNV+++N +E+ + R G+ Sbjct: 341 SVNLTKFVRDPFTDKASFDWEEYKEVVRVFTRMLDNVVEVNGLPLEQQRNEIMRKRRHGM 400 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-------AYSSF 711 G +G S L +L + Y S +++ ++ ++ + LA+E+G ++ Sbjct: 401 GFLGLGSTLTMLRMKYGSADSLGFTEQVARDMAVAGWEVGLSLAKEKGPAPIMDETFTVT 460 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNC 763 L + D + E+ ++ R SR P +L + G R ++ Sbjct: 461 PQMLRQRPEMAKDGWRVGQEIEGKVLHARYSRYMQRIASVAP--DLVDELAETGARFTHH 518 Query: 764 MAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ-RDLWDE 818 +IAPT TI AN S I+PS+ + Y ++ ++ E K+ ++ D Sbjct: 519 SSIAPTGTISLSLAN--NASNGIEPSFAHHYSRN------------VIREGKKSKEKVDV 564 Query: 819 AMISDLKYHDGSIGNIERIP--DD----LKKIHATAFEIDPMWLIESASRRQKWIDQ--A 870 L Y + + N + +P DD L +A +I P ++ + QKW+D + Sbjct: 565 YSFELLAYRE--LVNPKAMPFSDDPEAQLPDYFISADDISPKEHVDVQAAAQKWVDSSIS 622 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 ++ N+ D P D IYR A GLK R A Sbjct: 623 KTANVPTDYPYEDFKD-IYRYAHQQGLKGCTTFRFNPA 659 >gi|282854026|ref|ZP_06263363.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes J139] gi|282583479|gb|EFB88859.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes J139] gi|314981104|gb|EFT25198.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL110PA3] gi|315091930|gb|EFT63906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL110PA4] Length = 950 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 144/604 (23%), Positives = 242/604 (40%), Gaps = 85/604 (14%) Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 LL +F ++P FN GT PQ +S+CF+ +V D + I +E + K G G + Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462 + +R + + G + G + F++ A+ +A + GG R+ A L+ H D+EEF Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245 Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503 ++ + D R D N + + D FM V Q + L S Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 E KV + A L+ K+ +E P + + Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621 D N + G +++SN C+E ++L++SS CNL S+NLL N+ FD +K Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 I + +D I E K+ R +G+G + L L + Y S Sbjct: 395 TRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734 +A ++ + S ELA G YS + + P ++ +A+ RD Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYSGYA-----ENAEPHQAV--MAKHRDANRQVHP 507 Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789 + A+ ++ WD++ K T G RN+ +APT TI + + I+P + + Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567 Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 K + G +VN + LK E + Y + G++ P DL + H Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625 Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900 F+ I PM + + Q ++ A S + L E S + + +Y + W +GLK Sbjct: 626 FDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKAL 685 Query: 901 YYLR 904 R Sbjct: 686 AVYR 689 >gi|314966769|gb|EFT10868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL082PA2] gi|315093314|gb|EFT65290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL060PA1] gi|315103431|gb|EFT75407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL050PA2] gi|327327595|gb|EGE69371.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes HL103PA1] Length = 950 Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 144/604 (23%), Positives = 242/604 (40%), Gaps = 85/604 (14%) Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 LL +F ++P FN GT PQ +S+CF+ +V D + I +E + K G G + Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462 + +R + + G + G + F++ A+ +A + GG R+ A L+ H D+EEF Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245 Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503 ++ + D R D N + + D FM V Q + L S Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 E KV + A L+ K+ +E P + + Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621 D N + G +++SN C+E ++L++SS CNL S+NLL N+ FD +K Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 I + +D I E K+ R +G+G + L L + Y S Sbjct: 395 TRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734 +A ++ + S ELA G YS + + P ++ +A+ RD Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYSGYA-----ENAEPHQAV--MAKHRDANRQVHP 507 Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789 + A+ ++ WD++ K T G RN+ +APT TI + + I+P + + Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567 Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 K + G +VN + LK E + Y + G++ P DL + H Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625 Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900 F+ I PM + + Q ++ A S + L E S + + +Y + W +GLK Sbjct: 626 FDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKAL 685 Query: 901 YYLR 904 R Sbjct: 686 AVYR 689 >gi|319440695|ref|ZP_07989851.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium variabile DSM 44702] Length = 387 Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 15/307 (4%) Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 Y + F F+ +LG Y Y L +G R +E + VA+GLA + V+ Sbjct: 90 YAKKFRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMVALGLADGDAALASHLVD-- 147 Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + F +TPT N G + + SCFL + D++ I ++ L+K GG+ Sbjct: 148 -EIIDGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 206 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R +GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 207 LLSNIREVGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 266 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK F Sbjct: 267 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERIYGKPFADVS 323 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E+YE + I+ KI+A ++ + + FE+G+P+I F+D N +P + G + Sbjct: 324 VTEHYEEMVEDPRIRK-SKINARQFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GRIT 380 Query: 581 SSNLCTE 587 SNLC+E Sbjct: 381 HSNLCSE 387 >gi|118594264|ref|ZP_01551611.1| hypothetical protein MB2181_01310 [Methylophilales bacterium HTCC2181] gi|118440042|gb|EAV46669.1| hypothetical protein MB2181_01310 [Methylophilales bacterium HTCC2181] Length = 720 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 138/577 (23%), Positives = 245/577 (42%), Gaps = 79/577 (13%) Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D + I ++E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 112 IEDSMTDILDKVKEAGLTLKAGCGIGYEYSTLRPKGAFVAGAGAYTSGPLSFMDIYDRMC 171 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ G R+GA A + H DV +F+ ++ G R N + I FM+ V Sbjct: 172 FTVSSAGGRRGAQMATFDIAHPDVTDFIKAKREDG----RLRQFNLSCLITKEFMEAVKA 227 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYE-------------------RQADRGEIKV 536 + W L P + + KE +I +N E + A + KV Sbjct: 228 DGEWKLAFP-----ITEKEAKEDQIDLKNNEQVVWREWPVNGKYLTELKGKNAGKVACKV 282 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 ++ + A LW +++ ++ P D N + + ++N C E L Sbjct: 283 YKTLKAKRLWDIIMSSTYDYAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPP---- 338 Query: 597 TAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 C LGSINL N F++D+ + R+LDNV++IN +EK + Sbjct: 339 YGACLLGSINLTKFVKNPFTDKAYFNWDEYKEVVGIFTRMLDNVVEINGLPLEKQRDEIA 398 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA---- 707 R G+G +G S+L ++ + Y ++++ ++ ++ V+LA+E+GA Sbjct: 399 RKRRHGMGYLGLGSSLAMMQMVYGDEKSIKFTEDVSRILAEEGWKTGVDLAKEKGAAPIM 458 Query: 708 ---YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRN 760 + L + D I + ++ ++ M R SR P L+ ++ G+R Sbjct: 459 EELFEVTPAMLAMRPEMETDGIKIGDKLPGKVLMGRYSRYMQQFP-KSLQDQIADQGVRF 517 Query: 761 SNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQR 813 S+ +IAPT TI AN S I+PS+ + Y ++ + V+ F L R Sbjct: 518 SHHSSIAPTGTISLSLAN--NASNGIEPSFAHHYSRNVIREGKKSKEKVDVFSFELLAYR 575 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 L ++ + + + E++PD D I A A +D I++A+ QKWID Sbjct: 576 HLINQKAMPFSEKEN------EKLPDYFIDSSTIQAKA-HVD----IQAAA--QKWID-- 620 Query: 871 QSLNLYLDEPSGKKL-DF--IYRQAWLMGLKTTYYLR 904 S++ ++ P+ DF IY A+ GLK R Sbjct: 621 SSISKTINVPTDYDYEDFKSIYLYAYDKGLKGCTTFR 657 >gi|281423575|ref|ZP_06254488.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella oris F0302] gi|281402395|gb|EFB33226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella oris F0302] Length = 861 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 150/658 (22%), Positives = 269/658 (40%), Gaps = 111/658 (16%) Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSC 371 P+ R+A +A E + + A E + +L F ++ + + G H LS+C Sbjct: 48 PEDMHRRIANEVARIEAKYKNPMNAQEIFEMLDHFKYIVPAGSPMTGIGNSHQVASLSNC 107 Query: 372 FLTTVPD--DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 F+ + D YG I +E L K GG+G+D + +R G+ ++ + S G++PF+ Sbjct: 108 FVIGLEGKADSYGAIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFM 167 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + +++ V Q G+R GA+ + H D E F+D + G + N + + D Sbjct: 168 ERYSNSTREVAQDGRR-GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKLDDE 222 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ--ADRGEIKVFRKISAVALW 546 FM+ + NY +Q D E K+ ++ISA LW Sbjct: 223 FMQAAVDD--------------------------RNYMQQWPIDAKEPKITKEISARKLW 256 Query: 547 RKMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVH-SSNLCTEITLNSSSEETAVCNL 602 K++ +++ P + F D +I +G S+N C EI L C L Sbjct: 257 EKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFTTVSTNPCGEIPLCPYDS----CRL 312 Query: 603 GSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINC----------------- 640 SINL ++ F++DK ++ A R++D+++D+ Sbjct: 313 LSINLYSYVEKPFTTEASFNFDKFKKHVQIAQRIMDDIVDLEMEKIDLIIHKIKEDPEND 372 Query: 641 -------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 H EK K+ + R G+G+ L L + Y + EA + + + ++ + Sbjct: 373 EVKEAEYHLWEKIKRKSGMGRRTGVGITAEGDMLAALGLRYGTQEATDFSVSVHKTLALN 432 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A +SV +A+ERGA+ + EV + P EL + Sbjct: 433 AYRSSVTMARERGAFEIYDAK---------------REVNNPFVQRIKEADP--ELFADM 475 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQ 812 + G RN C+ IAPT T + + + I+P + +Y + ++ + V+ V+E+ Sbjct: 476 QQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDADVHVDFVDEVG- 534 Query: 813 RDLWDEAMISDLKYHDGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESA 860 D ++E ++ K+ N I+ + ATA ++D + ++ Sbjct: 535 -DSFEEYIVYHRKFLQWMQVNGYDTEKRYTQEEIDHLVAKSPYYKATANDVDWLMKVKMQ 593 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 QKW+D + S+ + L + L + +Y +AW G K R S V S K Sbjct: 594 GAIQKWVDHSISVTVNLPHDVDESLVNRLYVEAWKSGCKGCTIYRDGSRAGVMISVSK 651 >gi|331668937|ref|ZP_08369785.1| ribonucleoside-diphosphate reductase 1 subunit alpha (Ribonucleoside-diphosphate reductase 1 R1 subunit) (Ribonucleotidereductase 1) (B1 protein) [Escherichia coli TA271] gi|331064131|gb|EGI36042.1| ribonucleoside-diphosphate reductase 1 subunit alpha (Ribonucleoside-diphosphate reductase 1 R1 subunit) (Ribonucleotidereductase 1) (B1 protein) [Escherichia coli TA271] Length = 375 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/371 (26%), Positives = 159/371 (42%), Gaps = 22/371 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ E LY ++ + +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376 + VA L +E R FY+ +S+F TP + SG R P Q SSC L Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G G IPF K Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350 Query: 497 AGWTLFSPDEV 507 TLFSP +V Sbjct: 351 EDITLFSPSDV 361 >gi|327314698|ref|YP_004330135.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella denticola F0289] gi|326945704|gb|AEA21589.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Prevotella denticola F0289] Length = 865 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 157/687 (22%), Positives = 288/687 (41%), Gaps = 119/687 (17%) Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346 F + L ++ ++Y + + I + P+ R+A +A E + + A E ++LL Sbjct: 20 FGGDELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARIEHKYKNPLAAQEVFDLL 79 Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400 F ++ + H Q LS+CF+ + D YG I +E L K GG+ Sbjct: 80 DHFRYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRHGGV 139 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G+D + +R G+ ++ + S G++PF++ +++ V Q G+R GA+ + H D E Sbjct: 140 GHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+D + G + N + I D FM+ + + ++F I Sbjct: 199 AFIDAKMEEG----KVTGANVSVKITDEFMQAAVADRPFV---------------QQFPI 239 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578 D V + +SA LW K++ +++ P + F D S P + + Sbjct: 240 ---------DARAPMVSKTVSAKTLWGKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290 Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631 S+N C EI L C L S+NL ++ + FD+D + + A R+ Sbjct: 291 FQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVVDPFTDHAHFDFDLFSRHAQLAQRI 346 Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 +D+++D+ H EK ++ + R G+G+ + Sbjct: 347 MDDIVDLEMEKIDLIMEKIKHDPQSEEVKHAEYHLWEKIREKSGKGRRTGVGITAEGDMI 406 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + Y + EA + + ++ +A ASV +AQERGA + + F I Sbjct: 407 AAMGLRYGTQEATDFSVNVHRTLALNAYRASVTMAQERGALGIYDAKREENNPF----IN 462 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L E +L ++++KK G RN C+ IAPT T + + + I+P + Sbjct: 463 RLKEADAKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509 Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH- 845 +Y + ++ + T V+ V+E+ D ++E ++ YH + +E D +K + Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIV----YHHKFLTWMEVNGIDTRKRYT 563 Query: 846 ---------------ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889 ATA ++D + + QKW+D + S+ + L ++L + +Y Sbjct: 564 QEEIDGLVKRSPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDEELVNKLY 623 Query: 890 RQAWLMGLK--TTYYLRSRSATSVEKS 914 +AW G K T Y SRS + S Sbjct: 624 VEAWRSGCKGCTIYRDGSRSGVMISVS 650 >gi|295836140|ref|ZP_06823073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB74] gi|197695235|gb|EDY42168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB74] Length = 964 Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 145/580 (25%), Positives = 245/580 (42%), Gaps = 46/580 (7%) Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F ++P FN GT PQ +S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 144 FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRS 203 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468 + + G + G + F++ A+ +A + GG R+ A L+ H DVE F++ + Sbjct: 204 -SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVEGFIETKVK 262 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + R D A + DL +T QNA ++ DE + GK F + Sbjct: 263 EEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK-FGL---- 314 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 R GE V ++ A +L+RKM + P I + D N G ++ SN Sbjct: 315 --RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNP 370 Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI 638 C+E + L+++S CNL S+NL+ N F+ ++ A + + +D I Sbjct: 371 CSEYMHLDNTS-----CNLASLNLMKFLKDDGNGNQSFEAERFAKLVELVITAMDISICF 425 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 EK ++ R +G+G + L Y S +A ++ A S Sbjct: 426 ADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAISSLMTGTAYRRS 485 Query: 699 VELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPWDELKKRVK 754 ELA G Y F + + + V + A VR D+L + + W ++ + + Sbjct: 486 AELAAVVGPYEGFARNATAHKRVMKQHADANGAAVRMDDLDTPVWAAATEAWQDVLRLGE 545 Query: 755 TIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 G RN+ +APT TI A C + ++P + K + G + + V + + Sbjct: 546 KNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVNGTVPQALR 604 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQK 865 R + E I + H GN+ P LK H F+ I PM + + Q Sbjct: 605 RLGYQEEQIEAIVAHIAENGNVVDAP-ALKTEHYEVFDCAMGDRAISPMGHVRMMAAIQP 663 Query: 866 WIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904 WI A S + + E + ++++ IY +AW +G+K R Sbjct: 664 WISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 703 >gi|83647576|ref|YP_436011.1| ribonucleotide reductase subunit alpha [Hahella chejuensis KCTC 2396] gi|83635619|gb|ABC31586.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC 2396] Length = 712 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 129/562 (22%), Positives = 233/562 (41%), Gaps = 74/562 (13%) Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 E + K G+G +++ +R GA++ G + G + F+ + + V+ G R+GA Sbjct: 117 HEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDKMCFTVSSAGGRRGA 176 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP--- 504 A + H DV +F+ ++ G R N + I + F+K V + W P Sbjct: 177 QMATFDVHHPDVFDFVRAKREDG----RLRQFNLSLLITEDFIKAVQNDEDWRFSFPITR 232 Query: 505 ----DEVSDLHD----LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 ++ D++D LY ++F + ++ R +++R + A ++W ++T ++ Sbjct: 233 KEAEEDNIDVNDETQYLY-RDFPVKDGYMTDESGRVVCRIYRTVKARSIWDAIMTSTYDF 291 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612 P D N + + ++N C E L C LGS+NL Sbjct: 292 AEPGFILIDKVNEMNNNWFCENIRATNPCGEQPLPPYGS----CLLGSVNLTKFVEYPFT 347 Query: 613 -NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N +F++DK + R+LDNV++IN +E + R G+G++G S L +L Sbjct: 348 ENAKFNFDKYRKVVAIFTRMLDNVVEINGLPLEGQRHEIQYKRRHGMGILGLGSTLAMLR 407 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYS-------------SFKGSLWDQ 718 +PY S E+V +E ++ +ELA+E+G + + Sbjct: 408 MPYGSDESVSFTEEVCREMALEGWRQGLELAKEKGPAPIMEDTFIVTEEMLRLRPEMAKD 467 Query: 719 GVFPIDSI-GLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATI-- 772 G+ D + G + + M R + D L K+ G R ++ +IAPT TI Sbjct: 468 GLKAGDKLKGKVLHAKYSRYMQRVAEADPKLVDALAKK----GARFTHHTSIAPTGTISL 523 Query: 773 --ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 AN S I+PS+ + Y + + + K ++ D L Y Sbjct: 524 SLAN--NASNGIEPSFAHHYSR-----------NVIRQGKKTKEKMDVFSYELLAYR--H 568 Query: 831 IGNIERIP------DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSG 882 + N + +P L T+ ++ P ++ + Q W+D +++ N+ D P G Sbjct: 569 LVNPKAMPFSEDAEAQLPAYFTTSDDVTPKQHVDIQAAAQLWVDSSISKTANVPTDFPYG 628 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + D IY A+ GLK R Sbjct: 629 EFKD-IYMYAYEKGLKGCTTFR 649 >gi|313667234|ref|YP_004049635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oceanithermus profundus DSM 14977] gi|313153865|gb|ADR37715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oceanithermus profundus DSM 14977] Length = 927 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 138/587 (23%), Positives = 237/587 (40%), Gaps = 123/587 (20%) Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND-- 433 VPDD+ GI A E A + D++ +R GA + + G + G + FL D Sbjct: 205 VPDDMGGIIDAATEAVRRALAGEQVYVDFSALRPEGAPVKRSGGTASGPVSFLSEIFDHF 264 Query: 434 -----------TAVA------------VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 VA V QGG R+GA A L H DV +FL + Sbjct: 265 LYWARLGGVESGPVATLRYVYAPILRVVRQGGTRRGAGMATLSWQHPDVLDFLTAK---- 320 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD--LHDLYGKEFEIAYENYERQ 528 D++ D+ ++ A LF V LH + GK Y++ Sbjct: 321 -------DLDREEAEGDIATFNISVLADNELFDGPAVDSGYLHPVPGK-----YDS---- 364 Query: 529 ADRGEIKVFRKISAVALW--RKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSN 583 +S V W ++ + TG P + F D N +SP + + + ++N Sbjct: 365 --------LPTLSDVRPWILEQIAEHAWATGEPGLIFIDRINEKSPLKVLDERWRITATN 416 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C EI L C+LG++ L ++ + FD +R AVR LDNV+D+ + + Sbjct: 417 PCGEIPLAKGE----ACDLGAMILPSYVKDGAFDEAAFRRDVRLAVRFLDNVLDVTRYAV 472 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + +++ R +GLG+MG L L+ Y PEA E+ + + + A++ S LA+ Sbjct: 473 KDNEETQALTRRLGLGVMGLADMLILMGYRYDDPEAREVVEHVVGILRDEALAESERLAE 532 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR---N 760 ERG VFP+ + + +K + +G+R N Sbjct: 533 ERG-------------VFPL----------------------YAQHQKEFEALGIRPRRN 557 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK--------- 811 + +APT T++ + GVS I+P + + +V+ L+ Sbjct: 558 LALLTVAPTGTVSMVAGVSSGIEPIFAAFVWRRIGEQYVPLVHPLFARLLEGFEPPEGYR 617 Query: 812 -QRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 W+ E++++ L+ H GS ++ +P ++ + TA ++ P + + Q+ D Sbjct: 618 TPEGRWNMESVLAALQEHHGSPQQLDFLPQAIRDVFVTAHDVAPEDHVAMQAAVQRAFDA 677 Query: 870 AQSL---------NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 ++ L NL +E + + + +YR AW +G K R S Sbjct: 678 SEQLVGNAISKTTNLP-NEATVEDVLTVYRTAWKLGAKGITVYRDGS 723 >gi|225019985|ref|ZP_03709177.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum DSM 5476] gi|224947349|gb|EEG28558.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum DSM 5476] Length = 757 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 122/444 (27%), Positives = 200/444 (45%), Gaps = 72/444 (16%) Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LS+C++ + P+D + IF + A Y GG G D + + GA I+ ++ G + Sbjct: 73 LSNCYVISPPEDNIESIFECATKLARTYSYGGGCGTDISGLSPRGAKINNAARETSGSVS 132 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 F+ + + + Q G+R GA+ + H DVEEF+ ++ N + N + I Sbjct: 133 FMDLYSLITELIGQNGRR-GALMLSISCSHPDVEEFIKVKTNL----EKVTKANISVRIT 187 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FM+ V +A +TL EF + + GE + RK++A L+ Sbjct: 188 NDFMQAVKDSAEYTL---------------EF--------TRVETGE-HIERKVNARELF 223 Query: 547 RKMLTMLFETGHPWITFKD---PCNIRSPQQ---HVGVVHSSNLCTEITLNSSSEETAVC 600 R + ++ P F D N+ S + + GV N C E L + C Sbjct: 224 RLIAETNWDFAEPGALFWDRISSWNLLSNNKEFRYAGV----NPCAEEPLPAGGS----C 275 Query: 601 NLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHT 652 LGSINL + F N +FD+ T+ + R L++V++ + H +E+ ++S Sbjct: 276 LLGSINL-SEFVTDPFTENARFDFAAFKETVAVSTRALNDVLEEGLPLHPLEEQRESVSN 334 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R IGLG+MG L L I Y EA++++D+ ++ AI+ S LA++ GA Sbjct: 335 WRQIGLGIMGLADMLVKLGITYGEQEAIDLSDKIGFAMADTAIAESARLAKQHGA----- 389 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 FP +I + E A L + VK G+RNS + IAPT T+ Sbjct: 390 --------FPKCNIEEIIETPYFQANTSPKTL------ELVKKYGLRNSQLLTIAPTGTL 435 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS 796 + + G+S I+P Y N Y + S Sbjct: 436 STMLGISGGIEPIYANFYERKTES 459 >gi|312130912|ref|YP_003998252.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent [Leadbetterella byssophila DSM 17132] gi|311907458|gb|ADQ17899.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Leadbetterella byssophila DSM 17132] Length = 851 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 157/717 (21%), Positives = 287/717 (40%), Gaps = 130/717 (18%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--E 315 R IEE + + E L Y D L ++ +Y L + I + Sbjct: 3 RIIEETQRQKYTTEEATQAALEYFKGD----------DLAAKVWVTKYALKDSEGNIYEK 52 Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLS 369 P+ R+A +A E++ + E +L+ F ++ + +G +P LS Sbjct: 53 SPEDMHHRIASEIARVESKYPSPMKYEEILDLIRDFKYIVPQGSPM-TGIGNPFQIASLS 111 Query: 370 SCFLTTVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +CF+ P D GI QE L K GG+G+D + +R G+ + + S G++ Sbjct: 112 NCFVIGHPNGTGDSYGGIMKIDQEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLV 171 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 PF++ +++ V Q G R+GA+ + H D E+F+D + G + N + I Sbjct: 172 PFMERYSNSTREVAQDG-RRGALMLSVSINHPDAEDFIDAKLEAG----KITGANVSVRI 226 Query: 486 PDLFMKRVTQNAGWT----LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 D FMK V + +T +FSP+ ++ ++I Sbjct: 227 DDDFMKAVKNKSAYTQKFPIFSPNP----------------------------RMTKEID 258 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVH---SSNLCTEITLNSSSEET 597 A +W+K++ +++ P I F D S P + + + S+N C EI L Sbjct: 259 AEKIWQKIVHNAWKSAEPGILFWDTIRRESLPDCYADLGYETVSTNPCGEIPLCPYDS-- 316 Query: 598 AVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------- 644 C L +INL ++ N FD+D + A R++D++ID+ I+ Sbjct: 317 --CRLLAINLYSYVVNPFKKDAYFDFDLFKQHVGAAQRMMDDIIDLELEKIDAILQKIDE 374 Query: 645 ----------------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + + R G+G+ L L I Y E + + + + Sbjct: 375 DPEDEEIKRIEKNLWLEIRTKAREGRRTGVGITAEGDMLAALGIRYGREEGIAFSIKVHQ 434 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 ++ A AS E+A+ERGA+S F E + + S P Sbjct: 435 TLT